Citrus Sinensis ID: 019384

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MTAVHPPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIEVKPKPKAYPNPPA
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEcccccEEccccccccEEEEEEEccccEEEEEEccccEEEEEcccccccccEEEEEccccEEEEEEEccccEEEEEEcccEEEEEEccccccccEEEcccccccEEEEEEEEcccEEEEEEccccEEEEEEEccccccccccccccccccccccccEEEEEEEEEcccccEEEEEcccccEEEEEccccccccccccccccEEEEEEcccccEEEEEEccccccccccccccEEEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEEcccccEEEEEcccccEEEEEEEcccccEEEEEEEEcccccccccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEccccccEEEEEEcccccEcccccccccccc
Coil and Loop (DISEMBL)
mtavhppptsgrelgnppsdgisnlrfsnhsdhllvsswdksvrLYDASANVLRgefmhggpvldccfhddssgfsasadHTVRRLVFShgkedilgkhdapvrcieySYAAGQvitgswdkslkcwdprgasgqertlvgtypqpervySLSLVGNRLVVATagrhvnvydlrnmsqpeqrresslkyqtrcvrcypngtgyalSSVEGRVAMEFFDLSEASQAKKYAFKchrkseagrdivypvnaiafhpiygtfatggcdgfvnvwdgnnkkrlyqyskyptsiaALSFSRDGRLLAVASSytfeegdkphepdaiFVRSVNeievkpkpkaypnppa
Flexible Loop (DISEMBL)
mtavhppptsgrelgnpPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHgkedilgkhdaPVRCIEYSYAAGQVITGSWDKSLKCWDPRGasgqertlvgtypqPERVYSLSLVGNRLVVAtagrhvnvydlrnmsqpeqrresslkyqtrCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYtfeegdkphepdAIFVRsvneievkpkpkaypnppa
Low Complexity Region (SEG)
MTAVHPPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIEVkpkpkaypnppa
Disordered region (IsUnstruct)
*******************************DHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLR*************KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTF***********IFV********************
Disordered Region (DISOPRED)
*****PPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQP*QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIE*************
Disordered Region (DISEMBL)
*************LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNM************YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIEVKPKP********
Disordered Region (DISPRO)
MTAVHPPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIEV************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTAVHPPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIEVKPKPKAYPNPPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
Q9WVA3	326	Mitotic checkpoint protei	yes	no	0.923	0.969	0.555	1e-104
Q1JQB2	326	Mitotic checkpoint protei	yes	no	0.923	0.969	0.555	1e-104
O43684	328	Mitotic checkpoint protei	yes	no	0.923	0.963	0.555	1e-103
Q5RB58	328	Mitotic checkpoint protei	yes	no	0.923	0.963	0.552	1e-102
Q9YGY3	330	Mitotic checkpoint protei	N/A	no	0.923	0.957	0.540	1e-101
Q54DM1	331	Mitotic checkpoint protei	yes	no	0.941	0.972	0.489	5e-89
P41838	352	Poly(A)+ RNA export prote	yes	no	0.923	0.897	0.378	7e-58
P40066	365	Nucleoporin GLE2 OS=Sacch	yes	no	0.921	0.863	0.372	5e-56
Q38942	349	Rae1-like protein At1g806	no	no	0.926	0.908	0.367	2e-54
Q5FVA9	368	mRNA export factor OS=Xen	no	no	0.935	0.869	0.367	1e-51

>sp|Q9WVA3|BUB3_MOUSE Mitotic checkpoint protein BUB3 OS=Mus musculus GN=Bub3 PE=2 SV=2

 Score =  377 bits (968), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/322 (55%), Positives = 229/322 (71%), Gaps = 6/322 (1%)

Query: 13  ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD 71
           +L  PP DGIS+++FS N S  LLVSSWD SVRLYD  AN +R ++ H G VLDC F+D 
Sbjct: 8   KLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDP 67

Query: 72  SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
           +  +S   DH ++    +  +E+++G HDAP+RC+EY      ++TGSWD+++K WDPR 
Sbjct: 68  THAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT 127

Query: 132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
                    GT+ QPE+VY+LS+ G+RL+V TAGR V V+DLRNM   +QRRESSLKYQT
Sbjct: 128 PCN-----AGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQT 182

Query: 192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251
           RC+R +PN  GY LSS+EGRVA+E+ D S   Q KKYAFKCHR  E   + +YPVNAI+F
Sbjct: 183 RCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISF 242

Query: 252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEG 311
           H I+ TFATGG DGFVN+WD  NKKRL Q+ +YPTSIA+L+FS DG  LA+ASSY +E  
Sbjct: 243 HNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMD 302

Query: 312 DKPHEPDAIFVRSVNEIEVKPK 333
           D  H  D IF+R V + E KPK
Sbjct: 303 DTEHPEDGIFIRQVTDAETKPK 324

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20. This complex can also phosphorylate MAD1L1 (By similarity). Regulates chromosome segregation during oocyte meiosis.
Mus musculus (taxid: 10090)

>sp|Q1JQB2|BUB3_BOVIN Mitotic checkpoint protein BUB3 OS=Bos taurus GN=BUB3 PE=2 SV=1

 Score =  377 bits (968), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/322 (55%), Positives = 229/322 (71%), Gaps = 6/322 (1%)

Query: 13  ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD 71
           +L  PP DGIS+++FS N S  LLVSSWD SVRLYD  AN +R ++ H G VLDC F+D 
Sbjct: 8   KLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDP 67

Query: 72  SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
           +  +S   DH ++    +  +E+++G HDAP+RC+EY      ++TGSWD+++K WDPR 
Sbjct: 68  THAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT 127

Query: 132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
                    GT+ QPE+VY+LS+ G+RL+V TAGR V V+DLRNM   +QRRESSLKYQT
Sbjct: 128 PCN-----AGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQT 182

Query: 192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251
           RC+R +PN  GY LSS+EGRVA+E+ D S   Q KKYAFKCHR  E   + +YPVNAI+F
Sbjct: 183 RCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISF 242

Query: 252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEG 311
           H I+ TFATGG DGFVN+WD  NKKRL Q+ +YPTSIA+L+FS DG  LA+ASSY +E  
Sbjct: 243 HNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMD 302

Query: 312 DKPHEPDAIFVRSVNEIEVKPK 333
           D  H  D IF+R V + E KPK
Sbjct: 303 DTEHPEDGIFIRQVTDAETKPK 324

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. Regulates chromosome segregation during oocyte meiosis. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20. This complex can also phosphorylate MAD1L1.

Bos taurus (taxid: 9913)

>sp|O43684|BUB3_HUMAN Mitotic checkpoint protein BUB3 OS=Homo sapiens GN=BUB3 PE=1 SV=1

 Score =  377 bits (967), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/322 (55%), Positives = 229/322 (71%), Gaps = 6/322 (1%)

Query: 13  ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD 71
           +L  PP DGIS+++FS N S  LLVSSWD SVRLYD  AN +R ++ H G VLDC F+D 
Sbjct: 8   KLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDP 67

Query: 72  SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
           +  +S   DH ++    +  +E+++G HDAP+RC+EY      ++TGSWD+++K WDPR 
Sbjct: 68  THAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT 127

Query: 132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
                    GT+ QPE+VY+LS+ G+RL+V TAGR V V+DLRNM   +QRRESSLKYQT
Sbjct: 128 PCN-----AGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQT 182

Query: 192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251
           RC+R +PN  GY LSS+EGRVA+E+ D S   Q KKYAFKCHR  E   + +YPVNAI+F
Sbjct: 183 RCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISF 242

Query: 252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEG 311
           H I+ TFATGG DGFVN+WD  NKKRL Q+ +YPTSIA+L+FS DG  LA+ASSY +E  
Sbjct: 243 HNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMD 302

Query: 312 DKPHEPDAIFVRSVNEIEVKPK 333
           D  H  D IF+R V + E KPK
Sbjct: 303 DTEHPEDGIFIRQVTDAETKPK 324

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. Regulates chromosome segregation during oocyte meiosis. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20. This complex can also phosphorylate MAD1L1.

Homo sapiens (taxid: 9606)

>sp|Q5RB58|BUB3_PONAB Mitotic checkpoint protein BUB3 OS=Pongo abelii GN=BUB3 PE=2 SV=1

 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/322 (55%), Positives = 227/322 (70%), Gaps = 6/322 (1%)

Query: 13  ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD 71
           +L  PP DGIS+++FS N S  LLVSSWD SVRLYD  AN +R ++ H G VLDC F+D 
Sbjct: 8   KLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDP 67

Query: 72  SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
           +  +S   DH ++    +  +E+++G HDAP+RC+EY      + TGSWD+++K WDPR 
Sbjct: 68  THAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMATGSWDQTVKLWDPRT 127

Query: 132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
                    GT+ QPE+VY+LS+ G+RL+V TAGR V V+DLRNM   +QRRESSLKYQT
Sbjct: 128 PCN-----AGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQT 182

Query: 192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251
           RC+R + N  GY LSS+EGRVA+E+ D S   Q KKYAFKCHR  E   + +YPVNAI+F
Sbjct: 183 RCIRAFLNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISF 242

Query: 252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEG 311
           H I+ TFATGG DGFVN+WD  NKKRL Q+ +YPTSIA+L+FS DG  LA+ASSY +E  
Sbjct: 243 HNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMD 302

Query: 312 DKPHEPDAIFVRSVNEIEVKPK 333
           D  H  D IF+R V + E KPK
Sbjct: 303 DTEHPEDGIFIRQVTDAETKPK 324

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Promotes the formation of stable end-on bipolar attachments. Necessary for kinetochore localization of BUB1. Regulates chromosome segregation during oocyte meiosis. The BUB1/BUB3 complex plays a role in the inhibition of anaphase-promoting complex or cyclosome (APC/C) when spindle-assembly checkpoint is activated and inhibits the ubiquitin ligase activity of APC/C by phosphorylating its activator CDC20. This complex can also phosphorylate MAD1L1.

Pongo abelii (taxid: 9601)

>sp|Q9YGY3|BUB3_XENLA Mitotic checkpoint protein BUB3 OS=Xenopus laevis GN=bub3 PE=1 SV=1

 Score =  370 bits (949), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/322 (54%), Positives = 227/322 (70%), Gaps = 6/322 (1%)

Query: 13  ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD 71
           +L   P DGIS ++FS N S  LLVSSWD SVRLYD  AN +R ++ H GPVLDC F+D 
Sbjct: 14  KLNQAPEDGISAVKFSPNTSQFLLVSSWDSSVRLYDVPANTMRLKYQHAGPVLDCAFYDP 73

Query: 72  SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
           +  +S   DH ++    +   + ++G HDAP+RC+EY      ++TGSWD+++K WDPR 
Sbjct: 74  THAWSGGLDHQLKMHDLNTDGDTVVGSHDAPIRCVEYCPEVNVIVTGSWDQTVKLWDPRT 133

Query: 132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
                    GT+ QP++VY+LS+ G+RL+V TAGR V V+DLRNM   +QRRESSLKYQT
Sbjct: 134 PCN-----AGTFSQPDKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQT 188

Query: 192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251
           RC+R +PN  GY LSS+EGRVA+E+ D S   Q KKYAFKCHR  E   + +YPVNA++F
Sbjct: 189 RCIRAFPNKQGYVLSSIEGRVAVEYLDPSLEVQKKKYAFKCHRLKENNIEQIYPVNAVSF 248

Query: 252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEG 311
           H ++ TFATGG DGFVN+WD  NKKRL Q+ +YPTSIA+L+FS DG  LA+A+SY +E  
Sbjct: 249 HNLHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGSTLAIAASYMYEMD 308

Query: 312 DKPHEPDAIFVRSVNEIEVKPK 333
           D  H  DAI++R V + E KPK
Sbjct: 309 DIDHPEDAIYIRQVTDAETKPK 330

Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. Plays a role in the kinetochore-mediated mitotic checkpoint, which delays anaphase onset until all chromosomes have attached properly to the mitotic spindle. Required to establish and maintain spindle checkpoint arrest in eggs.

Xenopus laevis (taxid: 8355)

>sp|Q54DM1|BUB3_DICDI Mitotic checkpoint protein bub3 OS=Dictyostelium discoideum GN=bub3 PE=3 SV=1

 Score =  327 bits (839), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 161/329 (48%), Positives = 223/329 (67%), Gaps = 7/329 (2%)

Query: 7   PPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDC 66
           P +S  EL  PPSDGIS++ F  +S +LLV+SWD +VR YD   NV + ++ H GPV+D 
Sbjct: 5   PTSSFYELRLPPSDGISSVNFCPNSVNLLVTSWDSTVRCYDTQNNVQKWQYNHKGPVMDG 64

Query: 67  CFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKC 126
           CF + +  FS     +V+      G E  +G H+  VR + Y+    Q+ TG WD+ LK 
Sbjct: 65  CFPEKNKVFSGDVFGSVKHYDPVAGVEKEVGSHEDGVRSVVYNSDTQQLFTGGWDQQLKL 124

Query: 127 WDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQPEQRRE 184
           WD R     ++  +  +    +++++ +  + N LV+ TA ++V +YD R M    Q+RE
Sbjct: 125 WDIRS----DKMEISNHDLQSKIFTMDVSPISNMLVIGTADKYVTIYDTRQMETHLQKRE 180

Query: 185 SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVY 244
           SS+KYQTRC+R + +G GYAL+SVEGR+AME+FD S A Q+KKYAFKCHR +E+G D+VY
Sbjct: 181 SSIKYQTRCIRTFTDGKGYALASVEGRIAMEYFDPSPAVQSKKYAFKCHRLTESGVDVVY 240

Query: 245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
           PVN IAF+P YGTFATGGCD  V  WDG N+KRL+    YPTSI+++SF+ DG +LAVAS
Sbjct: 241 PVNCIAFNPHYGTFATGGCDKNVFFWDGANRKRLHALKTYPTSISSMSFNTDGNILAVAS 300

Query: 305 SYTFEEGDKPHEPDAIFVRSV-NEIEVKP 332
           SYTFEEG+K H PD IF+ ++ +E  +KP
Sbjct: 301 SYTFEEGEKDHPPDQIFIHNILSEKIIKP 329

Involved in cell cycle checkpoint enforcement.

Dictyostelium discoideum (taxid: 44689)

>sp|P41838|RAE1_SCHPO Poly(A)+ RNA export protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rae1 PE=1 SV=1

 Score =  224 bits (571), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 126/333 (37%), Positives = 185/333 (55%), Gaps = 17/333 (5%)

Query: 13  ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA---NVLRGEFMHGGPVLDCCFH 69
           E+  PP D IS+L FS  +++L  SSWD  VR+Y+  A   ++ +  + H GPVL   + 
Sbjct: 24  EVAQPPEDSISDLAFSPQAEYLAASSWDSKVRIYEVQATGQSIGKALYEHQGPVLSVNWS 83

Query: 70  DDSSGF-SASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ---VITGSWDKSLK 125
            D +   S S D + +      G+   +  HD  VRC+ +  A G    + TGSWDK+LK
Sbjct: 84  RDGTKVASGSVDKSAKVFDIQTGQNQQVAAHDDAVRCVRFVEAMGTSPILATGSWDKTLK 143

Query: 126 CWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRES 185
            WD R     + T + T   PERVY++  V   L VATA R++ V +L   ++  +   S
Sbjct: 144 YWDLR-----QSTPIATVSLPERVYAMDCVHPLLTVATAERNICVINLSEPTKIFKLAMS 198

Query: 186 SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP 245
            LK+QTR + C+  G GYA+ SVEGR A++  D   ASQ   ++F+CHR        VY 
Sbjct: 199 PLKFQTRSLACFIKGDGYAIGSVEGRCAIQNIDEKNASQ--NFSFRCHRNQAGNSADVYS 256

Query: 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
           VN+IAFHP YGTF+T G DG  + WD ++ +RL  Y     +I+  +F+R G + A A S
Sbjct: 257 VNSIAFHPQYGTFSTAGSDGTFSFWDKDSHQRLKSYPNVGGTISCSTFNRTGDIFAYAIS 316

Query: 306 YTFEEG---DKPHEPDAIFVRSVNEIEVKPKPK 335
           Y + +G   +    P+ I +  V + E+KP+PK
Sbjct: 317 YDWSKGYTFNNAQLPNKIMLHPVPQDEIKPRPK 349

Required for mitotic cell growth as well as for spore germination. Functions in cell cycle progression through trafficking of proteins required for mitosis. Has a role in the mRNA export process.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P40066|GLE2_YEAST Nucleoporin GLE2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GLE2 PE=1 SV=1

 Score =  218 bits (555), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 127/341 (37%), Positives = 186/341 (54%), Gaps = 26/341 (7%)

Query: 14  LGNPPSDGISNLRFSNHSDHLL-VSSWDKSVRLYDASANVLRGEFMH--GGPVLDCCFHD 70
           + +P  D IS++ FS   D +   SSWD  VR++D    V +G   H    PVL   + +
Sbjct: 31  INSPAEDSISDIAFSPQQDFMFSASSWDGKVRIWDVQNGVPQGRAQHESSSPVLCTRWSN 90

Query: 71  DSSGF-SASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ----VITGSWDKSLK 125
           D +   S   D+ ++    + G+   +G H AP++ + +          ++TGSWDK++K
Sbjct: 91  DGTKVASGGCDNALKLYDIASGQTQQIGMHSAPIKVLRFVQCGPSNTECIVTGSWDKTIK 150

Query: 126 CWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRES 185
            WD R     +   V T   PERVYS+    + LVVATA RH+ + +L N +   +   S
Sbjct: 151 YWDMR-----QPQPVSTVMMPERVYSMDNKQSLLVVATAERHIAIINLANPTTIFKATTS 205

Query: 186 SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK-YAFKCHRKSEA------ 238
            LK+QTRCV CY    GYA+ SVEGR ++ + D  +  Q K  ++FKCHR++        
Sbjct: 206 PLKWQTRCVACYNEADGYAIGSVEGRCSIRYID--DGMQKKSGFSFKCHRQTNPNRAPGS 263

Query: 239 -GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDG 297
            G+ +VYPVN+IAFHP+YGTF T G DG  N WD N + RL  Y     SI   SF+R+G
Sbjct: 264 NGQSLVYPVNSIAFHPLYGTFVTAGGDGTFNFWDKNQRHRLKGYPTLQASIPVCSFNRNG 323

Query: 298 RLLAVASSYTFEE---GDKPHEPDAIFVRSVNEIEVKPKPK 335
            + A A SY + +   G++P  P+ I + +  + EVK K K
Sbjct: 324 SVFAYALSYDWHQGHMGNRPDYPNVIRLHATTDEEVKEKKK 364

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. It is specifically important for nuclear mRNA export.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q38942|RAE1L_ARATH Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670 PE=2 SV=2

 Score =  213 bits (542), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/340 (36%), Positives = 188/340 (55%), Gaps = 23/340 (6%)

Query: 8   PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDAS------ANVLRGEFMHGG 61
           P    E+   P+D IS+L FS  +D L+ +SWD  VR ++ S      A+  +    H  
Sbjct: 14  PNKSYEVTPSPADSISSLSFSPRADILVATSWDNQVRCWEISRSGASLASAPKASISHDQ 73

Query: 62  PVLDCCFHDD-SSGFSASADHTVRRL-VFSHGKEDILGKHDAPVRCIEYSYAAGQVITGS 119
           PVL   + DD ++ FS   D   +   + S G+   +  H+ P+  + +      + TGS
Sbjct: 74  PVLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAMAWIPGMNLLATGS 133

Query: 120 WDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQP 179
           WDK+LK WD R     ++  V T   P++ Y+LS+    +VV TA R++ V++L+N    
Sbjct: 134 WDKTLKYWDTR-----QQNPVHTQQLPDKCYTLSVKHPLMVVGTADRNLIVFNLQNPQTE 188

Query: 180 EQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAG 239
            +R +S LKYQTRCV  +P+  G+ + S+EGRV +   D S+  Q+K + FKCHR    G
Sbjct: 189 FKRIQSPLKYQTRCVTAFPDQQGFLVGSIEGRVGVHHLDDSQ--QSKNFTFKCHRD---G 243

Query: 240 RDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRL 299
            DI Y VN++ FHP++GTFAT G DG  N WD ++K+RL   S+    I   SF+ DG +
Sbjct: 244 NDI-YSVNSLNFHPVHGTFATAGSDGAFNFWDKDSKQRLKAMSRCNQPIPCSSFNHDGSI 302

Query: 300 LAVASSYTFEEGDKPHEP----DAIFVRSVNEIEVKPKPK 335
            A A+ Y + +G + H P     +IF+    E EVK KP+
Sbjct: 303 YAYAACYDWSKGAENHNPATAKSSIFLHLPQESEVKAKPR 342

Arabidopsis thaliana (taxid: 3702)

>sp|Q5FVA9|RAE1L_XENTR mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1

 Score =  204 bits (518), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 191/348 (54%), Gaps = 28/348 (8%)

Query: 8   PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLYDASAN---VLRGEFMHGG 61
           P    E+ +PP D IS L FS  +   + L+  SW   VR ++   N   + + + MH G
Sbjct: 28  PMKDIEVTSPPDDSISCLSFSPPTLPGNFLIAGSWANDVRCWEVQDNGQTIPKAQQMHTG 87

Query: 62  PVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITG 118
           PVLD C+ DD S  F+AS D T +    +  +   + +HDAP++ + +  A     ++TG
Sbjct: 88  PVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQSIQIAQHDAPIKTVHWVKAPNYSCIMTG 147

Query: 119 SWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQ 178
           SWDKSLK WD R  +      + T   PER Y   +V    VVATA R + VY L N   
Sbjct: 148 SWDKSLKFWDTRSPNP-----LLTLQLPERCYCADVVYPMAVVATAERGLIVYQLENQPS 202

Query: 179 PEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR 234
             +R +S LK+Q RCV  + +     TG+AL S+EGRVA+ + +    ++   + FKCHR
Sbjct: 203 EFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHR 261

Query: 235 ----KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
                + A +DI Y VN IAFHP++GT AT G DG  + WD + + +L    +    I+A
Sbjct: 262 SNGTNTTAPQDI-YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA 320

Query: 291 LSFSRDGRLLAVASSYTFEEGDK---PHEPDAIFVRSVNEIEVKPKPK 335
            SF+ +G + A +SSY + +G +   P + + IF+R+  E E+KP+ K
Sbjct: 321 CSFNHNGNIFAYSSSYDWSKGHEFYNPQKKNYIFLRNAAE-ELKPRNK 367

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
255573149	342	mitotic checkpoint protein bub3, putativ	1.0	1.0	0.941	0.0
449484353	341	PREDICTED: mitotic checkpoint protein BU	0.997	1.0	0.932	0.0
449469132	341	PREDICTED: mitotic checkpoint protein BU	0.997	1.0	0.926	0.0
356536115	340	PREDICTED: mitotic checkpoint protein BU	0.979	0.985	0.931	0.0
224060765	331	predicted protein [Populus trichocarpa]	0.967	1.0	0.945	0.0
225428975	337	PREDICTED: mitotic checkpoint protein BU	0.985	1.0	0.926	0.0
358248988	344	uncharacterized protein LOC100820541 [Gl	0.976	0.970	0.928	0.0
356575722	340	PREDICTED: mitotic checkpoint protein BU	0.976	0.982	0.919	0.0
357480673	344	Mitotic checkpoint protein BUB3 [Medicag	0.976	0.970	0.913	0.0
147843489	371	hypothetical protein VITISV_008011 [Viti	0.985	0.908	0.838	1e-180

>gi|255573149|ref|XP_002527504.1| mitotic checkpoint protein bub3, putative [Ricinus communis] gi|223533144|gb|EEF34902.1| mitotic checkpoint protein bub3, putative [Ricinus communis]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/342 (94%), Positives = 334/342 (97%)

Query: 1   MTAVHPPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHG 60
           MTAV PP  SGREL NPP+DGISNLRFSNHSDHLLVSSWDKSVRLYDASAN LRGEF+HG
Sbjct: 1   MTAVAPPLGSGRELSNPPTDGISNLRFSNHSDHLLVSSWDKSVRLYDASANALRGEFLHG 60

Query: 61  GPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSW 120
           GPVLDCCFHDDSSGFSASAD+TVRRLVF++GKEDILG+HDAPVRCIEYSYAAGQVITGSW
Sbjct: 61  GPVLDCCFHDDSSGFSASADNTVRRLVFNYGKEDILGRHDAPVRCIEYSYAAGQVITGSW 120

Query: 121 DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 180
           DK+LKCWDPRGASGQ+RTLVGTYPQPERVYSL LVGNRLVVATAGRHVN+YDLRNMSQPE
Sbjct: 121 DKTLKCWDPRGASGQDRTLVGTYPQPERVYSLCLVGNRLVVATAGRHVNIYDLRNMSQPE 180

Query: 181 QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGR 240
           QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGR
Sbjct: 181 QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGR 240

Query: 241 DIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLL 300
           DIVYPVNAIAFHP+YGTFATGGCDGFVNVWDGNNKKRLYQYSKYP+SIAALSFSRDGRLL
Sbjct: 241 DIVYPVNAIAFHPVYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPSSIAALSFSRDGRLL 300

Query: 301 AVASSYTFEEGDKPHEPDAIFVRSVNEIEVKPKPKAYPNPPA 342
           AVASSYTFEEGDKPHEPD+IFVRSVNEIEVKPKPK  PNPPA
Sbjct: 301 AVASSYTFEEGDKPHEPDSIFVRSVNEIEVKPKPKVLPNPPA 342

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484353|ref|XP_004156860.1| PREDICTED: mitotic checkpoint protein BUB3-like [Cucumis sativus]

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/342 (93%), Positives = 331/342 (96%), Gaps = 1/342 (0%)

Query: 1   MTAVHPPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHG 60
           MTAV PPP +GREL NPPSDGISNLRFSNHSDHLLVSSWDK+VRLYDASANVLRGEF+HG
Sbjct: 1   MTAV-PPPAAGRELSNPPSDGISNLRFSNHSDHLLVSSWDKTVRLYDASANVLRGEFVHG 59

Query: 61  GPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSW 120
           GPVLDCCFHDDSSGFS S D+TVRRLVF+H KEDILG+HDAPVRC+EYSYAAGQ+ITG W
Sbjct: 60  GPVLDCCFHDDSSGFSVSVDNTVRRLVFNHNKEDILGRHDAPVRCVEYSYAAGQLITGGW 119

Query: 121 DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 180
           DK+LKCWDPRGASGQE TLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE
Sbjct: 120 DKTLKCWDPRGASGQEHTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 179

Query: 181 QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGR 240
           QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFD SEASQAKKYAFKCHRKSEAGR
Sbjct: 180 QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDPSEASQAKKYAFKCHRKSEAGR 239

Query: 241 DIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLL 300
           DIVYPVNAIAFHPIYGTFATGGCDG+VNVWDGNNKKRLYQYSKYPTS+AALSFSRDGRLL
Sbjct: 240 DIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSVAALSFSRDGRLL 299

Query: 301 AVASSYTFEEGDKPHEPDAIFVRSVNEIEVKPKPKAYPNPPA 342
           AVASSYTFEEGDKPHEPDAI+VRSVNEIEVKPKPK YPNPP 
Sbjct: 300 AVASSYTFEEGDKPHEPDAIYVRSVNEIEVKPKPKVYPNPPT 341

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469132|ref|XP_004152275.1| PREDICTED: mitotic checkpoint protein BUB3-like [Cucumis sativus]

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/342 (92%), Positives = 329/342 (96%), Gaps = 1/342 (0%)

Query: 1   MTAVHPPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHG 60
           MTAV PPP +GREL NPPSDGISNLRFSNHSDHLLVSSWDK+VRLYDASANVLRGEF+HG
Sbjct: 1   MTAV-PPPAAGRELSNPPSDGISNLRFSNHSDHLLVSSWDKTVRLYDASANVLRGEFVHG 59

Query: 61  GPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSW 120
           GPVLDCCFHDDSSGFS S D+TVRRLVF+H KEDILG+HDAPVRC+EYSYAAGQ+ITG W
Sbjct: 60  GPVLDCCFHDDSSGFSVSVDNTVRRLVFNHNKEDILGRHDAPVRCVEYSYAAGQLITGGW 119

Query: 121 DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 180
           DK+LKCWDPRGASGQE TLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE
Sbjct: 120 DKTLKCWDPRGASGQEHTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 179

Query: 181 QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGR 240
           QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFD SEASQAKKYAFKCHRKSEAGR
Sbjct: 180 QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDPSEASQAKKYAFKCHRKSEAGR 239

Query: 241 DIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLL 300
            IVYPV AIAFHPIYGTFATGGCDG+VNVWDGNNKKRLYQYSKYPTS+AALSFSRDGRLL
Sbjct: 240 GIVYPVTAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSVAALSFSRDGRLL 299

Query: 301 AVASSYTFEEGDKPHEPDAIFVRSVNEIEVKPKPKAYPNPPA 342
           AVASSYTFEEGDKPHEPDAI+VRSVNEIEVKPKPK YPNPP 
Sbjct: 300 AVASSYTFEEGDKPHEPDAIYVRSVNEIEVKPKPKVYPNPPT 341

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536115|ref|XP_003536585.1| PREDICTED: mitotic checkpoint protein BUB3-like [Glycine max]

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/335 (93%), Positives = 324/335 (96%)

Query: 8   PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCC 67
           P +GREL NPPSDGI+NLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMH GPVLDCC
Sbjct: 6   PATGRELSNPPSDGITNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHAGPVLDCC 65

Query: 68  FHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCW 127
           FHDDSSGFS +AD+TVRRLVFS  KEDILG+HDAPVRC+EYSYAAGQ+ITGSWDK+LKCW
Sbjct: 66  FHDDSSGFSVAADNTVRRLVFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCW 125

Query: 128 DPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSL 187
           DPRGASGQERTLVGTYPQPERVYSLSLVG+RLVVATAGRHVN+YDLRNMSQPEQRRESSL
Sbjct: 126 DPRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNIYDLRNMSQPEQRRESSL 185

Query: 188 KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN 247
           KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN
Sbjct: 186 KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN 245

Query: 248 AIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307
           AIAFHPIYGTFATGGCDG+VNVWDGNNKKRLYQYSKYPTS+AALSFSRDGRLLAVASSYT
Sbjct: 246 AIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSVAALSFSRDGRLLAVASSYT 305

Query: 308 FEEGDKPHEPDAIFVRSVNEIEVKPKPKAYPNPPA 342
           FEEG K  E DAIFVRSVNEIEVKPKPK YPNPPA
Sbjct: 306 FEEGPKSQEQDAIFVRSVNEIEVKPKPKVYPNPPA 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060765|ref|XP_002300265.1| predicted protein [Populus trichocarpa] gi|222847523|gb|EEE85070.1| predicted protein [Populus trichocarpa]

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/331 (94%), Positives = 324/331 (97%)

Query: 10  SGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFH 69
           SGREL NPP+DGISNLRFSNHSD LLVSSWDK+VRLYDASAN LRGEF+HGG VLDCCFH
Sbjct: 1   SGRELSNPPTDGISNLRFSNHSDLLLVSSWDKTVRLYDASANALRGEFLHGGAVLDCCFH 60

Query: 70  DDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDP 129
           DDSSGFSAS D+TVRRLVF+HGKEDILG+HDAPVRCIEYSYAAGQVITGSWDK+LKCWDP
Sbjct: 61  DDSSGFSASGDNTVRRLVFNHGKEDILGRHDAPVRCIEYSYAAGQVITGSWDKTLKCWDP 120

Query: 130 RGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKY 189
           RGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMS PEQRRESSLKY
Sbjct: 121 RGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSLPEQRRESSLKY 180

Query: 190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI 249
           QTRCVRCYPNGTGYALSSVEGRVAMEFFD SEASQAKKYAFKCHRKSEAGRDIVYPVNAI
Sbjct: 181 QTRCVRCYPNGTGYALSSVEGRVAMEFFDPSEASQAKKYAFKCHRKSEAGRDIVYPVNAI 240

Query: 250 AFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFE 309
           AFHP+YGTFATGGCDGFVNVWDGNNKKRLYQYSKYP+S+AALSFSRDGRLLAVASSYT+E
Sbjct: 241 AFHPVYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPSSVAALSFSRDGRLLAVASSYTYE 300

Query: 310 EGDKPHEPDAIFVRSVNEIEVKPKPKAYPNP 340
           EGDKPHEPDAIFVRSVNEIEVKPKPKAYPNP
Sbjct: 301 EGDKPHEPDAIFVRSVNEIEVKPKPKAYPNP 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428975|ref|XP_002264472.1| PREDICTED: mitotic checkpoint protein BUB3 [Vitis vinifera] gi|296083060|emb|CBI22464.3| unnamed protein product [Vitis vinifera]

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/338 (92%), Positives = 327/338 (96%), Gaps = 1/338 (0%)

Query: 1   MTAVHPPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHG 60
           MTAV+PP   GREL NPP+DGISNLRFSNHSD+LLVSSWDKSVRLYDASANVLRGEFMHG
Sbjct: 1   MTAVNPP-VIGRELVNPPADGISNLRFSNHSDNLLVSSWDKSVRLYDASANVLRGEFMHG 59

Query: 61  GPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSW 120
           GPVLDCCFHDDSSGFSAS D++VRRLVFSHGKED+LG+HDAPVRCIEYSYA GQV+TGSW
Sbjct: 60  GPVLDCCFHDDSSGFSASVDNSVRRLVFSHGKEDVLGRHDAPVRCIEYSYATGQVVTGSW 119

Query: 121 DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 180
           DK+LKCWDPRGASGQERTLVGTY QPERVYSLSL  NRLVVATAGRHVN+YDLRNMSQPE
Sbjct: 120 DKTLKCWDPRGASGQERTLVGTYAQPERVYSLSLFSNRLVVATAGRHVNIYDLRNMSQPE 179

Query: 181 QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGR 240
           QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFF+LSEASQAKKYAFKCHRKSEAGR
Sbjct: 180 QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFELSEASQAKKYAFKCHRKSEAGR 239

Query: 241 DIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLL 300
           DIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYP+S+AALSFSRDGRLL
Sbjct: 240 DIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPSSVAALSFSRDGRLL 299

Query: 301 AVASSYTFEEGDKPHEPDAIFVRSVNEIEVKPKPKAYP 338
           AVASSYTFEEGDKPHEPDAIFVRSVNE+EVKPKPK  P
Sbjct: 300 AVASSYTFEEGDKPHEPDAIFVRSVNEMEVKPKPKVLP 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248988|ref|NP_001239974.1| uncharacterized protein LOC100820541 [Glycine max] gi|255645545|gb|ACU23267.1| unknown [Glycine max]

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/338 (92%), Positives = 325/338 (96%), Gaps = 4/338 (1%)

Query: 9   TSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCF 68
           T+GREL NPPSDGI+NLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMH GPVLDCCF
Sbjct: 7   TTGRELSNPPSDGITNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHAGPVLDCCF 66

Query: 69  HDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128
           HDDSSGFSA+AD+TVRRLVFS  KEDILG+HDAPVRCIEYSYAAGQ+ITGSWDK+LKCWD
Sbjct: 67  HDDSSGFSAAADNTVRRLVFSSNKEDILGRHDAPVRCIEYSYAAGQLITGSWDKTLKCWD 126

Query: 129 PRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLK 188
           PRGASGQERTLVGTYPQPERVYSLSLVG+RLVVATAGRHVN+YDLRNMSQPEQRRESSLK
Sbjct: 127 PRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNIYDLRNMSQPEQRRESSLK 186

Query: 189 YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA 248
           YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA
Sbjct: 187 YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA 246

Query: 249 IAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTF 308
           IAFHPIYGTFATGGCDG+VNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTF
Sbjct: 247 IAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTF 306

Query: 309 EE----GDKPHEPDAIFVRSVNEIEVKPKPKAYPNPPA 342
           EE    G K  E DAI+VRSVNEIEVKPKPK YPNPPA
Sbjct: 307 EEGPKAGTKADEQDAIYVRSVNEIEVKPKPKVYPNPPA 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575722|ref|XP_003555986.1| PREDICTED: mitotic checkpoint protein BUB3-like [Glycine max]

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/334 (91%), Positives = 320/334 (95%)

Query: 8   PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCC 67
           P +GREL NPP DGI+NLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMH GPVLDCC
Sbjct: 6   PATGRELSNPPLDGITNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHAGPVLDCC 65

Query: 68  FHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCW 127
           FHDDSSGFS +AD+TVRRLVFS  KEDILG+HDAPVRC+EYSYAAGQ+ITGSWDK+LKCW
Sbjct: 66  FHDDSSGFSVAADNTVRRLVFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCW 125

Query: 128 DPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSL 187
           DPRGASGQERTLVGTYPQ ERVYSLSLVG+RLVVATAGRHVN+YDLRNMSQPEQRRESSL
Sbjct: 126 DPRGASGQERTLVGTYPQAERVYSLSLVGHRLVVATAGRHVNIYDLRNMSQPEQRRESSL 185

Query: 188 KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN 247
           KYQTRCV CYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN
Sbjct: 186 KYQTRCVHCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN 245

Query: 248 AIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307
           AIAFHPIYGTFATGGCDG+VNVWDGNNKKRLYQYSKYPTS+AALSFSRDGRLLAVASSYT
Sbjct: 246 AIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSVAALSFSRDGRLLAVASSYT 305

Query: 308 FEEGDKPHEPDAIFVRSVNEIEVKPKPKAYPNPP 341
           FE+G K  E DAIFVRSVNEIEVKPKPK YPNPP
Sbjct: 306 FEDGPKSQEQDAIFVRSVNEIEVKPKPKVYPNPP 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480673|ref|XP_003610622.1| Mitotic checkpoint protein BUB3 [Medicago truncatula] gi|355511957|gb|AES93580.1| Mitotic checkpoint protein BUB3 [Medicago truncatula]

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/334 (91%), Positives = 325/334 (97%)

Query: 9   TSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCF 68
           +SGREL NPPSDGISN+RFSNHSDHLLVSSWDK+VRLYDA+A+ LRGEF+HGGPVLDCCF
Sbjct: 11  SSGRELTNPPSDGISNIRFSNHSDHLLVSSWDKTVRLYDATADFLRGEFLHGGPVLDCCF 70

Query: 69  HDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128
           HDDSSGFSASAD+TVRRL+F+ GKEDILGKHDAPVRC+EYSYAAGQ+ITGSWDK++KCWD
Sbjct: 71  HDDSSGFSASADNTVRRLIFATGKEDILGKHDAPVRCVEYSYAAGQLITGSWDKTIKCWD 130

Query: 129 PRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLK 188
           PRGASGQERTLVGTY QPERVYSLSLVG+RLVVATAGRHVNVYD+RNMS PEQRRESSLK
Sbjct: 131 PRGASGQERTLVGTYAQPERVYSLSLVGHRLVVATAGRHVNVYDMRNMSCPEQRRESSLK 190

Query: 189 YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA 248
           YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA
Sbjct: 191 YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA 250

Query: 249 IAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTF 308
           +AFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYP+S+AALSFSRDGRLLAVASSYTF
Sbjct: 251 MAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPSSVAALSFSRDGRLLAVASSYTF 310

Query: 309 EEGDKPHEPDAIFVRSVNEIEVKPKPKAYPNPPA 342
           EEG KPH+ DAI+VRSVNEIEVKPKPKA PNP A
Sbjct: 311 EEGPKPHDQDAIYVRSVNEIEVKPKPKALPNPTA 344

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843489|emb|CAN82065.1| hypothetical protein VITISV_008011 [Vitis vinifera]

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 312/372 (83%), Positives = 326/372 (87%), Gaps = 35/372 (9%)

Query: 1   MTAVHPPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHG 60
           MTAV+PP   GREL NPP+DGISNLRFSNHSD+LLVSSWDKSVRLYDASANVLRGEFMHG
Sbjct: 1   MTAVNPP-VIGRELVNPPADGISNLRFSNHSDNLLVSSWDKSVRLYDASANVLRGEFMHG 59

Query: 61  GPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSW 120
           GPVLDCCFHDDSSGFSAS D++VRRLVFSHGKED+LG+HDAPVRCIEYSYA GQV+TGSW
Sbjct: 60  GPVLDCCFHDDSSGFSASVDNSVRRLVFSHGKEDVLGRHDAPVRCIEYSYATGQVVTGSW 119

Query: 121 DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 180
           DK+LKCWDPRGASGQERTLVGTY QPERVYSLSL  NRLVVATAGRHVN+YDLRNMSQPE
Sbjct: 120 DKTLKCWDPRGASGQERTLVGTYAQPERVYSLSLFSNRLVVATAGRHVNIYDLRNMSQPE 179

Query: 181 QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGR 240
           QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFF+LSEASQAKKYAFKCHRKSEAGR
Sbjct: 180 QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFELSEASQAKKYAFKCHRKSEAGR 239

Query: 241 DIVYPVNAIAFHPI----------------------------------YGTFATGGCDGF 266
           DIVYPVNAIAFHPI                                   GTFATGGCDGF
Sbjct: 240 DIVYPVNAIAFHPINGRVAWHGSSGDGGQLVTFFGVCGNGKLXWLLGGMGTFATGGCDGF 299

Query: 267 VNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN 326
           VNVWDGNNKKRLYQYSKYP+S+AALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN
Sbjct: 300 VNVWDGNNKKRLYQYSKYPSSVAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN 359

Query: 327 EIEVKPKPKAYP 338
           E+EVKPKPK  P
Sbjct: 360 EMEVKPKPKVLP 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
TAIR|locus:2007248	339	BUB3.2 "AT1G49910" [Arabidopsi	0.944	0.952	0.882	2.3e-158
TAIR|locus:2091211	340	BUB3.1 "AT3G19590" [Arabidopsi	0.959	0.964	0.866	1.3e-157
UNIPROTKB|Q1JQB2	326	BUB3 "Mitotic checkpoint prote	0.912	0.957	0.553	7.8e-94
UNIPROTKB|O43684	328	BUB3 "Mitotic checkpoint prote	0.912	0.951	0.553	7.8e-94
UNIPROTKB|F2Z5F3	328	BUB3 "Uncharacterized protein"	0.912	0.951	0.553	7.8e-94
MGI|MGI:1343463	326	Bub3 "budding uninhibited by b	0.912	0.957	0.553	7.8e-94
UNIPROTKB|Q5RB58	328	BUB3 "Mitotic checkpoint prote	0.912	0.951	0.550	2.4e-92
ZFIN|ZDB-GENE-041010-210	326	bub3 "BUB3 budding uninhibited	0.912	0.957	0.550	1.3e-91
UNIPROTKB|Q5ZHW3	329	BUB3 "Uncharacterized protein"	0.912	0.948	0.537	2.7e-91
DICTYBASE|DDB_G0292134	331	bub3 "putative mitotic checkpo	0.921	0.951	0.492	1.7e-82

TAIR|locus:2007248 BUB3.2 "AT1G49910" [Arabidopsis thaliana (taxid:3702)]

 Score = 1543 (548.2 bits), Expect = 2.3e-158, P = 2.3e-158
 Identities = 285/323 (88%), Positives = 303/323 (93%)

Query:     8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCC 67
             P  GREL NPPSDGISNLRFSN+SDHLLVSSWDKSVRLYDA+ +++RGEF HGG VLDCC
Sbjct:     5 PAIGRELSNPPSDGISNLRFSNNSDHLLVSSWDKSVRLYDANGDLMRGEFKHGGAVLDCC 64

Query:    68 FHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCW 127
             FHDDSSGFS  AD  VRR+ F+ GKED+LG H+ PVRC+EYSYAAGQVITGSWDK++KCW
Sbjct:    65 FHDDSSGFSVCADTKVRRIDFNAGKEDVLGTHEKPVRCVEYSYAAGQVITGSWDKTIKCW 124

Query:   128 DPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSL 187
             DPRGASG ERT +GTY QPERV SLSLVGNRLVVATAGRHVN+YDLRNMSQPEQRRESSL
Sbjct:   125 DPRGASGTERTQIGTYMQPERVNSLSLVGNRLVVATAGRHVNIYDLRNMSQPEQRRESSL 184

Query:   188 KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN 247
             KYQTRCVRCYPNGTGYALSSVEGRV+MEFFDLSEA+QAKKYAFKCHRKSE GRDIVYPVN
Sbjct:   185 KYQTRCVRCYPNGTGYALSSVEGRVSMEFFDLSEAAQAKKYAFKCHRKSEDGRDIVYPVN 244

Query:   248 AIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT 307
             AIAFHPIYGTFA+GGCDGFVN+WDGNNKKRLYQYSKYPTSIAALSFSRDG LLAVASSYT
Sbjct:   245 AIAFHPIYGTFASGGCDGFVNIWDGNNKKRLYQYSKYPTSIAALSFSRDGGLLAVASSYT 304

Query:   308 FEEGDKPHEPDAIFVRSVNEIEV 330
             FEEGDKPHEPDAIFVRSVNEIEV
Sbjct:   305 FEEGDKPHEPDAIFVRSVNEIEV 327

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2091211 BUB3.1 "AT3G19590" [Arabidopsis thaliana (taxid:3702)]

 Score = 1536 (545.8 bits), Expect = 1.3e-157, P = 1.3e-157
 Identities = 286/330 (86%), Positives = 307/330 (93%)

Query:     1 MTAVHPPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHG 60
             MT V   P++GREL NPPSDGISNLRFSN+SDHLLVSSWDK VRLYD S N L+GEF+HG
Sbjct:     1 MTTV--TPSAGRELSNPPSDGISNLRFSNNSDHLLVSSWDKRVRLYDVSTNSLKGEFLHG 58

Query:    61 GPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSW 120
             G VLDCCFHDD SGFS  AD+ VRR+VF+ GKEDILG HD  VRC+EYSYAAGQVITGSW
Sbjct:    59 GAVLDCCFHDDFSGFSVGADYKVRRIVFNVGKEDILGTHDKAVRCVEYSYAAGQVITGSW 118

Query:   121 DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 180
             DK++KCWDPRGASG ERT VGTY QPERVYS+SLVG+RLVVATAGRHVN+YDLRNMSQPE
Sbjct:   119 DKTVKCWDPRGASGPERTQVGTYLQPERVYSMSLVGHRLVVATAGRHVNIYDLRNMSQPE 178

Query:   181 QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGR 240
             QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEA+QAKKYAFKCHRKSEAGR
Sbjct:   179 QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAAQAKKYAFKCHRKSEAGR 238

Query:   241 DIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLL 300
             DIVYPVN+IAFHPIYGTFATGGCDGFVN+WDGNNKKRLYQYSKYPTSI+ALSFSRDG+LL
Sbjct:   239 DIVYPVNSIAFHPIYGTFATGGCDGFVNIWDGNNKKRLYQYSKYPTSISALSFSRDGQLL 298

Query:   301 AVASSYTFEEGDKPHEPDAIFVRSVNEIEV 330
             AVASSYTFEEG+K  EP+AIFVRSVNEIEV
Sbjct:   299 AVASSYTFEEGEKSQEPEAIFVRSVNEIEV 328

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0000776 "kinetochore" evidence=IDA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

UNIPROTKB|Q1JQB2 BUB3 "Mitotic checkpoint protein BUB3" [Bos taurus (taxid:9913)]

 Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
 Identities = 176/318 (55%), Positives = 226/318 (71%)

Query:    13 ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD 71
             +L  PP DGIS+++FS N S  LLVSSWD SVRLYD  AN +R ++ H G VLDC F+D 
Sbjct:     8 KLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDP 67

Query:    72 SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
             +  +S   DH ++    +  +E+++G HDAP+RC+EY      ++TGSWD+++K WDPR 
Sbjct:    68 THAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT 127

Query:   132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
                      GT+ QPE+VY+LS+ G+RL+V TAGR V V+DLRNM   +QRRESSLKYQT
Sbjct:   128 PCN-----AGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQT 182

Query:   192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251
             RC+R +PN  GY LSS+EGRVA+E+ D S   Q KKYAFKCHR  E   + +YPVNAI+F
Sbjct:   183 RCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISF 242

Query:   252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEG 311
             H I+ TFATGG DGFVN+WD  NKKRL Q+ +YPTSIA+L+FS DG  LA+ASSY +E  
Sbjct:   243 HNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMD 302

Query:   312 DKPHEPDAIFVRSVNEIE 329
             D  H  D IF+R V + E
Sbjct:   303 DTEHPEDGIFIRQVTDAE 320

GO:0051983 "regulation of chromosome segregation" evidence=ISS

GO:0071173 "spindle assembly checkpoint" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IEA

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007126 "meiosis" evidence=IEA

UNIPROTKB|O43684 BUB3 "Mitotic checkpoint protein BUB3" [Homo sapiens (taxid:9606)]

 Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
 Identities = 176/318 (55%), Positives = 226/318 (71%)

Query:    13 ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD 71
             +L  PP DGIS+++FS N S  LLVSSWD SVRLYD  AN +R ++ H G VLDC F+D 
Sbjct:     8 KLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDP 67

Query:    72 SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
             +  +S   DH ++    +  +E+++G HDAP+RC+EY      ++TGSWD+++K WDPR 
Sbjct:    68 THAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT 127

Query:   132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
                      GT+ QPE+VY+LS+ G+RL+V TAGR V V+DLRNM   +QRRESSLKYQT
Sbjct:   128 PCN-----AGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQT 182

Query:   192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251
             RC+R +PN  GY LSS+EGRVA+E+ D S   Q KKYAFKCHR  E   + +YPVNAI+F
Sbjct:   183 RCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISF 242

Query:   252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEG 311
             H I+ TFATGG DGFVN+WD  NKKRL Q+ +YPTSIA+L+FS DG  LA+ASSY +E  
Sbjct:   243 HNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMD 302

Query:   312 DKPHEPDAIFVRSVNEIE 329
             D  H  D IF+R V + E
Sbjct:   303 DTEHPEDGIFIRQVTDAE 320

GO:0007126 "meiosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0071173 "spindle assembly checkpoint" evidence=IDA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F2Z5F3 BUB3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
 Identities = 176/318 (55%), Positives = 226/318 (71%)

Query:    13 ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD 71
             +L  PP DGIS+++FS N S  LLVSSWD SVRLYD  AN +R ++ H G VLDC F+D 
Sbjct:     8 KLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDP 67

Query:    72 SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
             +  +S   DH ++    +  +E+++G HDAP+RC+EY      ++TGSWD+++K WDPR 
Sbjct:    68 THAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT 127

Query:   132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
                      GT+ QPE+VY+LS+ G+RL+V TAGR V V+DLRNM   +QRRESSLKYQT
Sbjct:   128 PCN-----AGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQT 182

Query:   192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251
             RC+R +PN  GY LSS+EGRVA+E+ D S   Q KKYAFKCHR  E   + +YPVNAI+F
Sbjct:   183 RCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISF 242

Query:   252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEG 311
             H I+ TFATGG DGFVN+WD  NKKRL Q+ +YPTSIA+L+FS DG  LA+ASSY +E  
Sbjct:   243 HNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMD 302

Query:   312 DKPHEPDAIFVRSVNEIE 329
             D  H  D IF+R V + E
Sbjct:   303 DTEHPEDGIFIRQVTDAE 320

GO:0071173 "spindle assembly checkpoint" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

MGI|MGI:1343463 Bub3 "budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
 Identities = 176/318 (55%), Positives = 226/318 (71%)

Query:    13 ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD 71
             +L  PP DGIS+++FS N S  LLVSSWD SVRLYD  AN +R ++ H G VLDC F+D 
Sbjct:     8 KLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDP 67

Query:    72 SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
             +  +S   DH ++    +  +E+++G HDAP+RC+EY      ++TGSWD+++K WDPR 
Sbjct:    68 THAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT 127

Query:   132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
                      GT+ QPE+VY+LS+ G+RL+V TAGR V V+DLRNM   +QRRESSLKYQT
Sbjct:   128 PCN-----AGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQT 182

Query:   192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251
             RC+R +PN  GY LSS+EGRVA+E+ D S   Q KKYAFKCHR  E   + +YPVNAI+F
Sbjct:   183 RCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISF 242

Query:   252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEG 311
             H I+ TFATGG DGFVN+WD  NKKRL Q+ +YPTSIA+L+FS DG  LA+ASSY +E  
Sbjct:   243 HNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMD 302

Query:   312 DKPHEPDAIFVRSVNEIE 329
             D  H  D IF+R V + E
Sbjct:   303 DTEHPEDGIFIRQVTDAE 320

GO:0000070 "mitotic sister chromatid segregation" evidence=IMP

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IMP

GO:0007067 "mitosis" evidence=IEA

GO:0007126 "meiosis" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IDA

GO:0071173 "spindle assembly checkpoint" evidence=ISO;IDA

UNIPROTKB|Q5RB58 BUB3 "Mitotic checkpoint protein BUB3" [Pongo abelii (taxid:9601)]

 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 175/318 (55%), Positives = 224/318 (70%)

Query:    13 ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD 71
             +L  PP DGIS+++FS N S  LLVSSWD SVRLYD  AN +R ++ H G VLDC F+D 
Sbjct:     8 KLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDP 67

Query:    72 SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
             +  +S   DH ++    +  +E+++G HDAP+RC+EY      + TGSWD+++K WDPR 
Sbjct:    68 THAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMATGSWDQTVKLWDPRT 127

Query:   132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
                      GT+ QPE+VY+LS+ G+RL+V TAGR V V+DLRNM   +QRRESSLKYQT
Sbjct:   128 PCN-----AGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQT 182

Query:   192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251
             RC+R + N  GY LSS+EGRVA+E+ D S   Q KKYAFKCHR  E   + +YPVNAI+F
Sbjct:   183 RCIRAFLNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISF 242

Query:   252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEG 311
             H I+ TFATGG DGFVN+WD  NKKRL Q+ +YPTSIA+L+FS DG  LA+ASSY +E  
Sbjct:   243 HNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMD 302

Query:   312 DKPHEPDAIFVRSVNEIE 329
             D  H  D IF+R V + E
Sbjct:   303 DTEHPEDGIFIRQVTDAE 320

GO:0051983 "regulation of chromosome segregation" evidence=ISS

GO:0071173 "spindle assembly checkpoint" evidence=ISS

ZFIN|ZDB-GENE-041010-210 bub3 "BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 175/318 (55%), Positives = 225/318 (70%)

Query:    13 ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD 71
             +L   P D +S ++FS + S  LLVSSWD SVRLYDASAN +R ++ H  PVLDC F D 
Sbjct:     8 KLAQGPEDSVSAVKFSPSSSQFLLVSSWDGSVRLYDASANSMRMKYQHLAPVLDCAFSDP 67

Query:    72 SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
             +  +S   D  ++    +  ++ I+G HDAP+RC+E+      ++TGSWD+S++ WDPR 
Sbjct:    68 THAWSGGLDSQLKTHDLNTDQDTIVGTHDAPIRCVEFCPEVNVLVTGSWDQSVRLWDPRT 127

Query:   132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
                      GT+ QPE+VY+LS+ G+RL+V TAGR V V+DLRNM   +QRRESSLKYQT
Sbjct:   128 PCN-----AGTFTQPEKVYTLSVAGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQT 182

Query:   192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251
             RC+R +PN  GY LSS+EGRVA+E+ D S   Q KKYAFKCHR  E G + VYPVNAI+F
Sbjct:   183 RCIRAFPNKQGYVLSSIEGRVAVEYLDPSLEVQKKKYAFKCHRLKENGIEQVYPVNAISF 242

Query:   252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEG 311
             H ++ TFATGG DGFVN+WD  NKKRL Q+ +YP+SIA+LSFS DG LLA+ASSY  E G
Sbjct:   243 HSVHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPSSIASLSFSTDGSLLAIASSYMQELG 302

Query:   312 DKPHEPDAIFVRSVNEIE 329
             D  H  DA+F+R V + E
Sbjct:   303 DVSHPADAVFIRQVTDAE 320

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5ZHW3 BUB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 171/318 (53%), Positives = 224/318 (70%)

Query:    13 ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD 71
             +L   P DGIS+++FS N S  LLVSSWD +VRLYD  AN +R ++ H G VLDC F+D 
Sbjct:    11 KLNQTPDDGISSVKFSPNTSQFLLVSSWDTTVRLYDVPANSMRLKYQHSGAVLDCAFYDP 70

Query:    72 SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
             +  +S   D  ++    +  +E+++G HDAP+RC+EY      ++TGSWD+++K WDPR 
Sbjct:    71 THAWSGGLDQQLKMHDLNTDQENLVGGHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRT 130

Query:   132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT 191
                      GT+ QPE+VY+LS+ G+RL+V TAGR V V+DLRNM   +QRRESSLKYQT
Sbjct:   131 PCN-----AGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQT 185

Query:   192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF 251
             RC+R +PN  GY LSS+EGRVA+E+ D S   Q KKYAFKCHR  E   + +YPVNAI+F
Sbjct:   186 RCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEIQKKKYAFKCHRLKENNIEQIYPVNAISF 245

Query:   252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEG 311
             H ++ TFATGG DGFVN+WD  NKKRL Q+ +YPTSIA+L+FS DG  LA+ASSY +E  
Sbjct:   246 HNVHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMD 305

Query:   312 DKPHEPDAIFVRSVNEIE 329
             D  H  D I++R V + E
Sbjct:   306 DIEHPEDGIYIRQVTDAE 323

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IEA

GO:0051983 "regulation of chromosome segregation" evidence=IEA

GO:0071173 "spindle assembly checkpoint" evidence=IEA

DICTYBASE|DDB_G0292134 bub3 "putative mitotic checkpoint protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
 Identities = 158/321 (49%), Positives = 218/321 (67%)

Query:     7 PPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDC 66
             P +S  EL  PPSDGIS++ F  +S +LLV+SWD +VR YD   NV + ++ H GPV+D 
Sbjct:     5 PTSSFYELRLPPSDGISSVNFCPNSVNLLVTSWDSTVRCYDTQNNVQKWQYNHKGPVMDG 64

Query:    67 CFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKC 126
             CF + +  FS     +V+      G E  +G H+  VR + Y+    Q+ TG WD+ LK 
Sbjct:    65 CFPEKNKVFSGDVFGSVKHYDPVAGVEKEVGSHEDGVRSVVYNSDTQQLFTGGWDQQLKL 124

Query:   127 WDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQPEQRRE 184
             WD R     ++  +  +    +++++ +  + N LV+ TA ++V +YD R M    Q+RE
Sbjct:   125 WDIRS----DKMEISNHDLQSKIFTMDVSPISNMLVIGTADKYVTIYDTRQMETHLQKRE 180

Query:   185 SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVY 244
             SS+KYQTRC+R + +G GYAL+SVEGR+AME+FD S A Q+KKYAFKCHR +E+G D+VY
Sbjct:   181 SSIKYQTRCIRTFTDGKGYALASVEGRIAMEYFDPSPAVQSKKYAFKCHRLTESGVDVVY 240

Query:   245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
             PVN IAF+P YGTFATGGCD  V  WDG N+KRL+    YPTSI+++SF+ DG +LAVAS
Sbjct:   241 PVNCIAFNPHYGTFATGGCDKNVFFWDGANRKRLHALKTYPTSISSMSFNTDGNILAVAS 300

Query:   305 SYTFEEGDKPHEPDAIFVRSV 325
             SYTFEEG+K H PD IF+ ++
Sbjct:   301 SYTFEEGEKDHPPDQIFIHNI 321

GO:0003674 "molecular_function" evidence=ND

GO:0000776 "kinetochore" evidence=ISS

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9WVA3	BUB3_MOUSE	No assigned EC number	0.5559	0.9239	0.9693	yes	no
O43684	BUB3_HUMAN	No assigned EC number	0.5559	0.9239	0.9634	yes	no
Q1JQB2	BUB3_BOVIN	No assigned EC number	0.5559	0.9239	0.9693	yes	no
P41838	RAE1_SCHPO	No assigned EC number	0.3783	0.9239	0.8977	yes	no
Q54DM1	BUB3_DICDI	No assigned EC number	0.4893	0.9415	0.9728	yes	no
P40066	GLE2_YEAST	No assigned EC number	0.3724	0.9210	0.8630	yes	no
Q5RB58	BUB3_PONAB	No assigned EC number	0.5527	0.9239	0.9634	yes	no
Q9YGY3	BUB3_XENLA	No assigned EC number	0.5403	0.9239	0.9575	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	342
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-27
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-20
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-13
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-04
smart00320	40	smart00320, WD40, WD40 repeats	3e-04
smart00320	40	smart00320, WD40, WD40 repeats	7e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  108 bits (272), Expect = 2e-27
 Identities = 72/293 (24%), Positives = 124/293 (42%), Gaps = 26/293 (8%)

Query: 19  SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDC-CFHDDSSGFS 76
           + G++ + FS     L   S D +++++D     L      H GPV D     D +   S
Sbjct: 9   TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68

Query: 77  ASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGS-WDKSLKCWDPRGASG 134
            S+D T+R      G+    L  H + V  + +S   G++++ S  DK++K WD      
Sbjct: 69  GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVE-TGK 126

Query: 135 QERTLVGTYPQPERVYSLSLVGNRLVVATAG--RHVNVYDLRNMSQPEQRRESSLKYQTR 192
              TL G     + V S++   +   VA++     + ++DLR          +    +  
Sbjct: 127 CLTTLRG---HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--CVATLTGHTGEVN 181

Query: 193 CVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH 252
            V   P+G     SS +G + +  +DLS          + H            VN++AF 
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKL--WDLSTGKC--LGTLRGHEN---------GVNSVAFS 228

Query: 253 PIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
           P     A+G  DG + VWD    + +   S +  S+ +L++S DG+ LA  S+
Sbjct: 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA 281

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 91.2 bits (227), Expect = 5e-21
 Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 34/261 (13%)

Query: 52  VLRGEFMHGGPVLDCCFHDDSSGF-SASADHTVRRLVFSHGKEDILGK-HDAPVRCIEYS 109
            L+G   H G V    F  D     + S D T++      G+     K H  PVR +  S
Sbjct: 4   TLKG---HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 110 YAAGQVITGSWDKSLKCWDPRGASGQE-RTLVGTYPQPERVYSLSLVGNRLVVATAGRH- 167
                + +GS DK+++ WD    +G+  RTL G       V S++   +  +++++ R  
Sbjct: 61  ADGTYLASGSSDKTIRLWDLE--TGECVRTLTG---HTSYVSSVAFSPDGRILSSSSRDK 115

Query: 168 -VNVYDLRNMSQPEQRRESSLKYQT---RCVRCYPNGTGYALSSVEGRVAMEFFDLSEAS 223
            + V+D+           ++L+  T     V   P+GT  A SS +G   ++ +DL    
Sbjct: 116 TIKVWDVETGKC-----LTTLRGHTDWVNSVAFSPDGTFVASSSQDG--TIKLWDLRTGK 168

Query: 224 QAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSK 283
                    H            VN++AF P      +   DG + +WD +  K L     
Sbjct: 169 --CVATLTGHTG---------EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG 217

Query: 284 YPTSIAALSFSRDGRLLAVAS 304
           +   + +++FS DG LLA  S
Sbjct: 218 HENGVNSVAFSPDGYLLASGS 238

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 89.8 bits (221), Expect = 8e-20
 Identities = 70/299 (23%), Positives = 116/299 (38%), Gaps = 27/299 (9%)

Query: 16  NPPSDGISNLRFSNHSDHLLV-SSWDKSVRLYDA-SANVLRGEFMHGGPVLDCCFHDDSS 73
              S+ +++L FS     L   SS D +++L+D  +   L     H  PV    F  D  
Sbjct: 152 EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG 211

Query: 74  GF--SASADHTVRRLVFSHGKE---DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128
               S S+D T+R    S GK     + G  D+ V    +S     + +GS D +++ WD
Sbjct: 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS--FSPDGSLLASGSSDGTIRLWD 269

Query: 129 PRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQPEQRRESS 186
            R +S   RTL G       V S++    G  L   ++   V ++DL             
Sbjct: 270 LRSSSSLLRTLSG---HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG 326

Query: 187 LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV 246
            +     +   P+G+       +    +  +DL      K              +    V
Sbjct: 327 HEGPVSSLSFSPDGSLLVSGGSDDGT-IRLWDLRTGKPLKTL------------EGHSNV 373

Query: 247 NAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
            +++F P     ++G  DG V +WD +    L     + + + +L FS DG+ LA  SS
Sbjct: 374 LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS 432

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 83.9 bits (208), Expect = 2e-18
 Identities = 53/262 (20%), Positives = 88/262 (33%), Gaps = 74/262 (28%)

Query: 19  SDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN----VLRGEFMHGGPVLDCCFHDDSS- 73
           +  +S++ FS     L  SS DK+++++D         LRG   H   V    F  D + 
Sbjct: 93  TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSPDGTF 149

Query: 74  GFSASADHTVR--RLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG 131
             S+S D T++   L        + G H   V  + +S    ++++ S D ++K WD   
Sbjct: 150 VASSSQDGTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208

Query: 132 ASGQERTLVGTYPQPERVYSLSLVGNR--LVVATAGRHVNVYDLRNMSQPEQRRESSLKY 189
                 TL G       V S++   +   L   +    + V+DLR               
Sbjct: 209 GK-CLGTLRG---HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT-------------- 250

Query: 190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI 249
              CV+                                     H  S         V ++
Sbjct: 251 -GECVQT---------------------------------LSGHTNS---------VTSL 267

Query: 250 AFHPIYGTFATGGCDGFVNVWD 271
           A+ P     A+G  DG + +WD
Sbjct: 268 AWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.7 bits (195), Expect = 2e-16
 Identities = 67/308 (21%), Positives = 109/308 (35%), Gaps = 27/308 (8%)

Query: 11  GRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG---EFMHGGPVLDCC 67
              L     D I+++ FS   + LL  S D +++L+D           E +H   V    
Sbjct: 57  SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116

Query: 68  FHDDSSGFSASA----DHTVRRLVFSHGKEDI--LGKHDAPVRCIEYSYAAGQVITGS-W 120
                      A    D TV+    S   + I  L  H   V  + +S     + +GS  
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSL 176

Query: 121 DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 180
           D ++K WD R       TL G       +      G  +   ++   + ++DL       
Sbjct: 177 DGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR 235

Query: 181 QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGR 240
                            P+G+  A  S +G +    +DL         +     ++ +G 
Sbjct: 236 STLSGHSDSVVSSFS--PDGSLLASGSSDGTI--RLWDLR--------SSSSLLRTLSGH 283

Query: 241 DIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSK--YPTSIAALSFSRDGR 298
                V ++AF P     A+G  DG V +WD    K L   +   +   +++LSFS DG 
Sbjct: 284 S--SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGS 341

Query: 299 LLAVASSY 306
           LL    S 
Sbjct: 342 LLVSGGSD 349

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 52/210 (24%), Positives = 82/210 (39%), Gaps = 23/210 (10%)

Query: 99  HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR 158
           H   V C+ +S     + TGS D ++K WD        RTL G +  P R  + S  G  
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-LLRTLKG-HTGPVRDVAASADGTY 65

Query: 159 LVVATAGRHVNVYDLRNMSQPEQRRE--SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEF 216
           L   ++ + + ++DL      E  R       Y    V   P+G     SS   +     
Sbjct: 66  LASGSSDKTIRLWDLET---GECVRTLTGHTSY-VSSVAFSPDGR-ILSSSSRDKTIK-V 119

Query: 217 FDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGC-DGFVNVWDGNNK 275
           +D+           + H            VN++AF P  GTF      DG + +WD    
Sbjct: 120 WDVETGKC--LTTLRGHTD---------WVNSVAFSP-DGTFVASSSQDGTIKLWDLRTG 167

Query: 276 KRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
           K +   + +   + +++FS DG  L  +SS
Sbjct: 168 KCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 75.1 bits (183), Expect = 6e-15
 Identities = 69/296 (23%), Positives = 112/296 (37%), Gaps = 34/296 (11%)

Query: 16  NPPSDGISNLRFSNHSDHLLVS-SWDKSVRLYDASAN-VLRGEF-MHGGPVLDCCFHDDS 72
              +D +S+L FS     L+ S S D ++RL+D S   +LR     H   V+     D S
Sbjct: 195 AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGS 254

Query: 73  SGFSASADHTVRRLVFSHGKEDI--LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR 130
              S S+D T+R          +  L  H + V  + +S     + +GS D +++ WD  
Sbjct: 255 LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314

Query: 131 GASGQERTLVGTYPQPERVYSLSLVGNRLVVA-TAGRHVNVYDLRNMSQPEQRRESSLKY 189
                    +  +  P    S S  G+ LV   +    + ++DLR     +     S   
Sbjct: 315 TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS--- 371

Query: 190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI 249
               V   P+G   +  S +G V +                  H            V ++
Sbjct: 372 NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGS----LLRNLDGHTS---------RVTSL 418

Query: 250 AFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
            F P   + A+G  D  + +WD              TS+ ++SFS DG++LA  SS
Sbjct: 419 DFSPDGKSLASGSSDNTIRLWD------------LKTSLKSVSFSPDGKVLASKSS 462

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 69.3 bits (168), Expect = 4e-13
 Identities = 51/252 (20%), Positives = 89/252 (35%), Gaps = 21/252 (8%)

Query: 95  ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL 154
           +L  H+  +  I +S     +++GS D ++K WD        ++L G +       +LS 
Sbjct: 60  LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119

Query: 155 VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT--RCVRCYPNGTGYALSSVEGRV 212
                ++  +        L ++S P +   +   +      +   P+G   A  S     
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179

Query: 213 AMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI-YGTFATGGCDGFVNVWD 271
            ++ +DL   +         H           PV+++AF P      A+G  DG + +WD
Sbjct: 180 -IKLWDLR--TGKPLSTLAGHTD---------PVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Query: 272 GNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS------YTFEEGDKPHEPDAIFVRSV 325
            +  K L       +     SFS DG LLA  SS      +            +    SV
Sbjct: 228 LSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV 287

Query: 326 NEIEVKPKPKAY 337
             +   P  K  
Sbjct: 288 LSVAFSPDGKLL 299

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 95  ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128
            L  H  PV  + +S     + +GS D +++ WD
Sbjct: 6   TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 245 PVNAIAFHPIYGTFATGGCDGFVNVWD 271
           PV ++AF P     A+G  DG V VWD
Sbjct: 13  PVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 95  ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128
            L  H  PV  + +S     + +GS D ++K WD
Sbjct: 7   TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 245 PVNAIAFHPIYGTFATGGCDGFVNVWD 271
           PV ++AF P     A+G  DG + +WD
Sbjct: 14  PVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 19 SDGISNLRFSNHSDHLLVSSWDKSVRLYD 47
          +  ++++ FS   + L   S D +VR++D
Sbjct: 11 TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.98
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
PTZ00421	493	coronin; Provisional	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.94
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0296	399	consensus Angio-associated migratory cell protein	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.94
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.93
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.92
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG0641	350	consensus WD40 repeat protein [General function pr	99.91
PTZ00420	568	coronin; Provisional	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.91
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.9
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.9
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.9
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.9
KOG0289	506	consensus mRNA splicing factor [General function p	99.9
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.9
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.88
KOG0646	476	consensus WD40 repeat protein [General function pr	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.87
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.87
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.86
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.86
KOG1539	910	consensus WD repeat protein [General function pred	99.86
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.86
KOG1274	933	consensus WD40 repeat protein [General function pr	99.85
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.85
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.85
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.84
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG2096	420	consensus WD40 repeat protein [General function pr	99.84
KOG0639	705	consensus Transducin-like enhancer of split protei	99.84
KOG4328	498	consensus WD40 protein [Function unknown]	99.83
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.83
KOG2048	691	consensus WD40 repeat protein [General function pr	99.82
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.82
KOG1273	405	consensus WD40 repeat protein [General function pr	99.82
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.82
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.81
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.81
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.81
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.8
KOG4328	498	consensus WD40 protein [Function unknown]	99.8
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
KOG2055	514	consensus WD40 repeat protein [General function pr	99.79
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.79
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.78
KOG4227	609	consensus WD40 repeat protein [General function pr	99.78
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.77
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.76
KOG0267	825	consensus Microtubule severing protein katanin p80	99.76
KOG0646	476	consensus WD40 repeat protein [General function pr	99.76
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.75
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.75
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.73
COG2319	466	FOG: WD40 repeat [General function prediction only	99.73
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.71
KOG1334	559	consensus WD40 repeat protein [General function pr	99.71
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.71
KOG1963	792	consensus WD40 repeat protein [General function pr	99.7
KOG1273	405	consensus WD40 repeat protein [General function pr	99.7
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.7
PRK11028	330	6-phosphogluconolactonase; Provisional	99.7
KOG1188	376	consensus WD40 repeat protein [General function pr	99.7
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.69
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.69
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.69
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.69
KOG1310	758	consensus WD40 repeat protein [General function pr	99.69
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.69
COG2319	466	FOG: WD40 repeat [General function prediction only	99.67
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.66
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.66
PRK01742	429	tolB translocation protein TolB; Provisional	99.65
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.64
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.64
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.64
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.62
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.6
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.6
PRK11028	330	6-phosphogluconolactonase; Provisional	99.6
KOG1188	376	consensus WD40 repeat protein [General function pr	99.59
KOG0649	325	consensus WD40 repeat protein [General function pr	99.59
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.57
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.55
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.52
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.52
KOG1963	792	consensus WD40 repeat protein [General function pr	99.52
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.52
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.52
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.51
PRK01742	429	tolB translocation protein TolB; Provisional	99.5
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.5
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.5
PRK03629	429	tolB translocation protein TolB; Provisional	99.49
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.49
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.48
KOG0649	325	consensus WD40 repeat protein [General function pr	99.47
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.47
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.47
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.45
PRK04922	433	tolB translocation protein TolB; Provisional	99.42
KOG4227	609	consensus WD40 repeat protein [General function pr	99.42
PRK05137	435	tolB translocation protein TolB; Provisional	99.42
KOG1310	758	consensus WD40 repeat protein [General function pr	99.41
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.41
PRK02889	427	tolB translocation protein TolB; Provisional	99.4
KOG2321	703	consensus WD40 repeat protein [General function pr	99.4
KOG2139	445	consensus WD40 repeat protein [General function pr	99.4
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.38
PRK05137	435	tolB translocation protein TolB; Provisional	99.37
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.36
PRK04922	433	tolB translocation protein TolB; Provisional	99.34
PRK02889	427	tolB translocation protein TolB; Provisional	99.33
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.32
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.32
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.29
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.29
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.29
PRK03629	429	tolB translocation protein TolB; Provisional	99.27
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.23
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.22
KOG1334	559	consensus WD40 repeat protein [General function pr	99.21
PRK00178	430	tolB translocation protein TolB; Provisional	99.2
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.2
KOG4547	541	consensus WD40 repeat-containing protein [General	99.19
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.19
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.18
PRK04792	448	tolB translocation protein TolB; Provisional	99.17
KOG2139	445	consensus WD40 repeat protein [General function pr	99.14
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.13
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.12
KOG2315	566	consensus Predicted translation initiation factor	99.12
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.1
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.07
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.07
PRK01029	428	tolB translocation protein TolB; Provisional	99.05
PRK04792	448	tolB translocation protein TolB; Provisional	99.04
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.04
PRK01029	428	tolB translocation protein TolB; Provisional	99.04
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.01
PRK00178	430	tolB translocation protein TolB; Provisional	99.01
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.0
KOG2314	698	consensus Translation initiation factor 3, subunit	98.97
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.96
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.94
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.87
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.87
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.85
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.85
KOG2321	703	consensus WD40 repeat protein [General function pr	98.83
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.83
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.8
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.79
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.79
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.73
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.72
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.66
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.66
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.66
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.64
KOG4547	541	consensus WD40 repeat-containing protein [General	98.62
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.62
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.61
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.6
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.59
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.58
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.58
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.58
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.57
PRK04043	419	tolB translocation protein TolB; Provisional	98.57
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.56
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.55
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.54
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.52
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.51
COG4946	668	Uncharacterized protein related to the periplasmic	98.49
COG4946	668	Uncharacterized protein related to the periplasmic	98.48
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.47
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.46
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.44
PRK04043	419	tolB translocation protein TolB; Provisional	98.42
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.41
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.39
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.37
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.35
KOG2315	566	consensus Predicted translation initiation factor	98.31
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.3
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.29
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.27
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.17
KOG2695	425	consensus WD40 repeat protein [General function pr	98.17
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.15
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.13
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.12
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.07
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.02
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.0
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.94
KOG2314	698	consensus Translation initiation factor 3, subunit	97.92
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.91
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.9
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.87
KOG2695	425	consensus WD40 repeat protein [General function pr	97.81
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.81
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.79
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.75
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.72
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.71
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.7
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.67
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.66
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.64
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.63
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.57
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.51
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.48
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.46
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.46
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.43
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.37
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.36
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.3
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.26
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.16
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.15
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.14
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.14
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.13
KOG3621	726	consensus WD40 repeat-containing protein [General	97.13
KOG3621	726	consensus WD40 repeat-containing protein [General	97.05
PRK02888	635	nitrous-oxide reductase; Validated	97.02
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.84
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.73
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.71
KOG2395	644	consensus Protein involved in vacuole import and d	96.71
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.67
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.57
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.55
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.54
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.52
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.46
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.38
PRK02888	635	nitrous-oxide reductase; Validated	96.1
KOG2395	644	consensus Protein involved in vacuole import and d	96.1
KOG2444	238	consensus WD40 repeat protein [General function pr	95.95
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.94
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.74
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.62
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.57
KOG2444	238	consensus WD40 repeat protein [General function pr	95.56
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.37
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.2
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.19
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.1
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.99
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	94.86
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.77
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	94.69
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.64
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	94.53
PRK13616	591	lipoprotein LpqB; Provisional	94.47
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.46
PRK13616	591	lipoprotein LpqB; Provisional	93.81
PHA02713	557	hypothetical protein; Provisional	93.63
COG3391	381	Uncharacterized conserved protein [Function unknow	93.54
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.48
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.29
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	93.23
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.18
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.11
COG3391	381	Uncharacterized conserved protein [Function unknow	92.95
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.87
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	92.82
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	92.23
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.89
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	91.54
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.78
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	90.76
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	90.64
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	90.11
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.83
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	89.8
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	89.77
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	89.75
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.04
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.03
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	88.8
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	88.79
KOG2377	657	consensus Uncharacterized conserved protein [Funct	88.65
COG5167	776	VID27 Protein involved in vacuole import and degra	88.5
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.5
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	88.38
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	88.25
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	88.2
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	88.09
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	87.59
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	87.46
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	87.41
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	87.36
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	87.14
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	86.4
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	85.92
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	85.2
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	84.67
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	83.79
PHA02713	557	hypothetical protein; Provisional	83.19
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	83.0
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	82.69
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	82.5
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	81.42
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	81.34
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	81.25
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	80.84
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	80.54
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	80.4

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.3e-53  Score=349.59  Aligned_cols=319  Identities=60%  Similarity=1.011  Sum_probs=296.3

Q ss_pred             CCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEec
Q 019384           10 SGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFS   89 (342)
Q Consensus        10 ~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~   89 (342)
                      +..+|-+++.++|.+|.|+|.++.|+.+|+||++|+||+....++.++.|+.++++|+|.++.+.++++.|+.|+++|+.
T Consensus         4 ~~~~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln   83 (323)
T KOG1036|consen    4 NEFELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLN   83 (323)
T ss_pred             cccccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEec
Confidence            46788899999999999999999999999999999999998888888999999999999999999999999999999999


Q ss_pred             cCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEE
Q 019384           90 HGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVN  169 (342)
Q Consensus        90 ~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~  169 (342)
                      +++...+..|..+|.|+.+++..+.+++||||++|++||.+...     ..........|.+++..++.|++|+.+..|.
T Consensus        84 ~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-----~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~  158 (323)
T KOG1036|consen   84 TGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-----VVGTFDQGKKVYCMDVSGNRLVVGTSDRKVL  158 (323)
T ss_pred             CCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-----cccccccCceEEEEeccCCEEEEeecCceEE
Confidence            99999999999999999999988899999999999999988522     2233445568999999999999999999999


Q ss_pred             EEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384          170 VYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI  249 (342)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  249 (342)
                      +||+|+...+.++++..+++++.||++.|++..+++++.+|++.+.++|.++..+.++|++++|++...+....+||+++
T Consensus       159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai  238 (323)
T KOG1036|consen  159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAI  238 (323)
T ss_pred             EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEecee
Confidence            99999998888888899999999999999999999999999999999999877788999999999999999999999999


Q ss_pred             EEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCC-CCCCCcEEEEEccCC
Q 019384          250 AFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDK-PHEPDAIFVRSVNEI  328 (342)
Q Consensus       250 ~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~-~~~~~~~~~~~~~~~  328 (342)
                      +|||-.++||||+.||.|.+||..+.+.+.++.+....|.+++|+-||..||+++++--+++.. ..+.+.|+++.+.++
T Consensus       239 ~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~~~~~~~~i~I~~l~d~  318 (323)
T KOG1036|consen  239 AFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQYERADTPTHERNAIFIRDLTDY  318 (323)
T ss_pred             EeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechhhhcCCCCCCCCCceEEEecccc
Confidence            9999999999999999999999999999999998888899999999999999999988888777 777789999999999


Q ss_pred             ccccC
Q 019384          329 EVKPK  333 (342)
Q Consensus       329 ~~~~~  333 (342)
                      +.+||
T Consensus       319 e~~pk  323 (323)
T KOG1036|consen  319 ETKPK  323 (323)
T ss_pred             ccCCC
Confidence            99987

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.7e-48  Score=319.57  Aligned_cols=323  Identities=40%  Similarity=0.732  Sum_probs=279.8

Q ss_pred             CCCCCCccCCCCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCC-cee--eeeeecCCceEEEEEeCCCC-eEEEecC
Q 019384            6 PPPTSGRELGNPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASA-NVL--RGEFMHGGPVLDCCFHDDSS-GFSASAD   80 (342)
Q Consensus         6 ~~~~~~~~~~~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~-~~~--~~~~~h~~~V~~~~~~~~~~-~~s~s~D   80 (342)
                      ..|.++.|+.+++++.|.+|+|||. ...++.+|+||+||+|+++. +.+  .....|.++|.+++|++++. +++|+.|
T Consensus        14 ~~~~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D   93 (347)
T KOG0647|consen   14 ADPNKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD   93 (347)
T ss_pred             CCcccceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC
Confidence            3689999999999999999999994 45666899999999999976 333  33457999999999996665 5799999


Q ss_pred             CcEEEEEeccCceeecccCCcceeEEEEeCCCC--EEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCe
Q 019384           81 HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAG--QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR  158 (342)
Q Consensus        81 ~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~--~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~  158 (342)
                      +.+++||+.++....+..|..+|.+|.|.+...  .|+|||+|++||.||+|....     +.....+.++++++..-..
T Consensus        94 k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-----v~t~~LPeRvYa~Dv~~pm  168 (347)
T KOG0647|consen   94 KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-----VATLQLPERVYAADVLYPM  168 (347)
T ss_pred             CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe-----eeeeeccceeeehhccCce
Confidence            999999999998888899999999999997554  789999999999999985432     3344567888888887778


Q ss_pred             EEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384          159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA  238 (342)
Q Consensus       159 ~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~  238 (342)
                      ++.+++++.|.+|+|++......+.+.+++.++.||+++.+.+.+++|+.+|++.+...|..  .+...+.+++|+....
T Consensus       169 ~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~--~~~~nFtFkCHR~~~~  246 (347)
T KOG0647|consen  169 AVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP--NPKDNFTFKCHRSTNS  246 (347)
T ss_pred             eEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC--CccCceeEEEeccCCC
Confidence            99999999999999998766556667788999999999999999999999999988777763  2367789999997654


Q ss_pred             CCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCC---C
Q 019384          239 GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKP---H  315 (342)
Q Consensus       239 ~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~---~  315 (342)
                      ..+..++|++|+|+|....|+|++.||++.+||-+....+.+.+.|..+|.+.+|+-+|.++|-+.++||..|-+.   .
T Consensus       247 ~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDWSkGhe~~n~~  326 (347)
T KOG0647|consen  247 VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYDWSKGHEGNNPQ  326 (347)
T ss_pred             CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecccccccccCCCC
Confidence            4455899999999999999999999999999998887788888899999999999999999999999999888765   6


Q ss_pred             CCCcEEEEEccCCccccCCC
Q 019384          316 EPDAIFVRSVNEIEVKPKPK  335 (342)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~  335 (342)
                      -++.|+++..++.++||||+
T Consensus       327 ~~~~I~l~~~~~~evK~r~~  346 (347)
T KOG0647|consen  327 YKPQIFLHPVSTEEVKPRPK  346 (347)
T ss_pred             CCCeEEEeeccccccccCCC
Confidence            67799999999999999997

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-43  Score=299.66  Aligned_cols=274  Identities=18%  Similarity=0.221  Sum_probs=220.8

Q ss_pred             CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc
Q 019384           15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK   92 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~   92 (342)
                      .++|.+.|.+++|+|+|.+|||||.|.|+|+||+.++.. .+..+|..-|.|++|+||++. ++|+.||+|++||..++.
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~  190 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ  190 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence            479999999999999999999999999999999988653 445689999999999988775 599999999999988887


Q ss_pred             e--eecccCCcceeEEEEeC-----CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC-eEEEEEc
Q 019384           93 E--DILGKHDAPVRCIEYSY-----AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN-RLVVATA  164 (342)
Q Consensus        93 ~--~~~~~h~~~V~~~~~~~-----~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~-~~~~~s~  164 (342)
                      .  +.+.+|+..|++++|.|     ...+|+|+|.||+|+|||+..+..    .+....|+..|.++.+.|+ .+++++.
T Consensus       191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~----~~~lsgHT~~VTCvrwGG~gliySgS~  266 (480)
T KOG0271|consen  191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC----VRTLSGHTASVTCVRWGGEGLIYSGSQ  266 (480)
T ss_pred             cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE----EEEeccCccceEEEEEcCCceEEecCC
Confidence            4  57899999999999986     456899999999999999864322    2223346778889999754 7899999


Q ss_pred             CCeEEEEeCCCCCCcccccccccceeeEEEE-----------EeeCCc-------------------------eEEEEcc
Q 019384          165 GRHVNVYDLRNMSQPEQRRESSLKYQTRCVR-----------CYPNGT-------------------------GYALSSV  208 (342)
Q Consensus       165 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~-----------~~~~~~-------------------------~~~~~s~  208 (342)
                      |++|++|+...+........+..  .++.++           |.|.+.                         .+++++.
T Consensus       267 DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD  344 (480)
T KOG0271|consen  267 DRTIKVWRALDGKLCRELKGHAH--WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD  344 (480)
T ss_pred             CceEEEEEccchhHHHhhcccch--heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence            99999999887643322222211  122222           233333                         3888888


Q ss_pred             CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcce
Q 019384          209 EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSI  288 (342)
Q Consensus       209 ~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V  288 (342)
                      |.++  .+|+....++.. ..+.+|++         -|+.+.||||++++|++|-|.+|++||.++++.+.+|.+|...|
T Consensus       345 d~tl--flW~p~~~kkpi-~rmtgHq~---------lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~V  412 (480)
T KOG0271|consen  345 DFTL--FLWNPFKSKKPI-TRMTGHQA---------LVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAV  412 (480)
T ss_pred             CceE--EEecccccccch-hhhhchhh---------heeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcccee
Confidence            8875  569875543322 23456665         48999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCCEEEEEEec
Q 019384          289 AALSFSRDGRLLAVASSY  306 (342)
Q Consensus       289 ~~v~~spdg~~las~s~~  306 (342)
                      +.++||.|.++|++||.+
T Consensus       413 YqvawsaDsRLlVS~SkD  430 (480)
T KOG0271|consen  413 YQVAWSADSRLLVSGSKD  430 (480)
T ss_pred             EEEEeccCccEEEEcCCC
Confidence            999999999999999975

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.1e-42  Score=293.07  Aligned_cols=278  Identities=21%  Similarity=0.229  Sum_probs=223.2

Q ss_pred             cCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee--eeeeecCCceEEEEEeC------CCCeEEEecCCcEE
Q 019384           13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL--RGEFMHGGPVLDCCFHD------DSSGFSASADHTVR   84 (342)
Q Consensus        13 ~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~--~~~~~h~~~V~~~~~~~------~~~~~s~s~D~~i~   84 (342)
                      +.+.+|.++|.+|+|+|||..||||+.||+|++||..++..  +.+.+|...|++++|.|      .+.++++|.||+++
T Consensus       151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vr  230 (480)
T KOG0271|consen  151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVR  230 (480)
T ss_pred             eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEE
Confidence            45679999999999999999999999999999999987653  45678999999999953      24567999999999


Q ss_pred             EEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEe----------
Q 019384           85 RLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLS----------  153 (342)
Q Consensus        85 ~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s----------  153 (342)
                      +||+..+. ...+.+|+.+|+|+.|.-+ .+|+|||.|++||+|+...+..  ...+..|.+-....+++          
T Consensus       231 IWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~--~r~lkGHahwvN~lalsTdy~LRtgaf  307 (480)
T KOG0271|consen  231 IWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKL--CRELKGHAHWVNHLALSTDYVLRTGAF  307 (480)
T ss_pred             EEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhH--HHhhcccchheeeeeccchhhhhcccc
Confidence            99998887 4578999999999999754 5899999999999999754221  12233322221112222          


Q ss_pred             -c-------------------------cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc
Q 019384          154 -L-------------------------VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS  207 (342)
Q Consensus       154 -~-------------------------~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s  207 (342)
                       .                         .++.+++++.|.++.+|+-....++..+.. .+...++.++|+||+.++++++
T Consensus       308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt-gHq~lVn~V~fSPd~r~IASaS  386 (480)
T KOG0271|consen  308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT-GHQALVNHVSFSPDGRYIASAS  386 (480)
T ss_pred             ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh-chhhheeeEEECCCccEEEEee
Confidence             1                         123599999999999999876655554443 2334578899999999999999


Q ss_pred             cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcc
Q 019384          208 VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTS  287 (342)
Q Consensus       208 ~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~  287 (342)
                      -|..++  +||.++.+.  .-.+++|-         .+|..|+|+.|.+.|++||.|.++++||+++.+....+.+|..+
T Consensus       387 FDkSVk--LW~g~tGk~--lasfRGHv---------~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DE  453 (480)
T KOG0271|consen  387 FDKSVK--LWDGRTGKF--LASFRGHV---------AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADE  453 (480)
T ss_pred             ccccee--eeeCCCcch--hhhhhhcc---------ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCce
Confidence            999875  599876543  23455554         47999999999999999999999999999999999999999999


Q ss_pred             eEEEEECCCCCEEEEEEecc
Q 019384          288 IAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       288 V~~v~~spdg~~las~s~~~  307 (342)
                      |+++.|||||+.+++|+.+.
T Consensus       454 Vf~vDwspDG~rV~sggkdk  473 (480)
T KOG0271|consen  454 VFAVDWSPDGQRVASGGKDK  473 (480)
T ss_pred             EEEEEecCCCceeecCCCce
Confidence            99999999999999988765

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.9e-41  Score=289.61  Aligned_cols=271  Identities=23%  Similarity=0.257  Sum_probs=227.4

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCC---CeEEEecCCcEEEEEeccCc-
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDS---SGFSASADHTVRRLVFSHGK-   92 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~---~~~s~s~D~~i~~w~~~~~~-   92 (342)
                      ....|..+.||+|+..|||||++|+++||...... +..+.+|...|.++.|+|..   .++||+.||++++|.+++.. 
T Consensus       174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~  253 (459)
T KOG0272|consen  174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP  253 (459)
T ss_pred             CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc
Confidence            35688999999999999999999999999987754 55667999999999998652   57899999999999998865 


Q ss_pred             eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEE
Q 019384           93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNV  170 (342)
Q Consensus        93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~i  170 (342)
                      ..-+.+|...|..++|+|+|++|+|+|.|.+-|+||+++...    .+....|...+.++++  +|..+++|+-|..-|+
T Consensus       254 l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E----lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv  329 (459)
T KOG0272|consen  254 LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE----LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV  329 (459)
T ss_pred             hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh----hHhhcccccccceeEecCCCceeeccCccchhhe
Confidence            456889999999999999999999999999999999986432    1222223444555554  6778899999999999


Q ss_pred             EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384          171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA  250 (342)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  250 (342)
                      ||+|+++.. .... .+...+..|+|+|+|..+++|+.|++++  +||++...  ..+.+.+|..         -|+.|+
T Consensus       330 WDlRtgr~i-m~L~-gH~k~I~~V~fsPNGy~lATgs~Dnt~k--VWDLR~r~--~ly~ipAH~n---------lVS~Vk  394 (459)
T KOG0272|consen  330 WDLRTGRCI-MFLA-GHIKEILSVAFSPNGYHLATGSSDNTCK--VWDLRMRS--ELYTIPAHSN---------LVSQVK  394 (459)
T ss_pred             eecccCcEE-EEec-ccccceeeEeECCCceEEeecCCCCcEE--Eeeecccc--cceecccccc---------hhhheE
Confidence            999998543 3333 2344678999999999999999999875  59997543  3677888876         388999


Q ss_pred             EcC-CCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          251 FHP-IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       251 ~sp-~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      |+| .|.+|+|+|.|++++||...+..+++++.||.+.|.++++||||.++++++.+.
T Consensus       395 ~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DR  452 (459)
T KOG0272|consen  395 YSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDR  452 (459)
T ss_pred             ecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCc
Confidence            999 688999999999999999999999999999999999999999999999988665

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.5e-39  Score=284.32  Aligned_cols=301  Identities=18%  Similarity=0.312  Sum_probs=237.2

Q ss_pred             CcccCCCCCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee----ecCCceEEEEEeCCCC-eE
Q 019384            1 MTAVHPPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF----MHGGPVLDCCFHDDSS-GF   75 (342)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~----~h~~~V~~~~~~~~~~-~~   75 (342)
                      +.|+||||+..+.--..|+..|++++|+|||.++||++.||++.|||-.+++...++    +|+|.|.++.|+||++ ++
T Consensus       172 v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~  251 (603)
T KOG0318|consen  172 VAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFL  251 (603)
T ss_pred             EEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEE
Confidence            358999999999999999999999999999999999999999999999988766655    5999999999997765 57


Q ss_pred             EEecCCcEEEEEeccCcee--------------------------------------------ecccCCcceeEEEEeCC
Q 019384           76 SASADHTVRRLVFSHGKED--------------------------------------------ILGKHDAPVRCIEYSYA  111 (342)
Q Consensus        76 s~s~D~~i~~w~~~~~~~~--------------------------------------------~~~~h~~~V~~~~~~~~  111 (342)
                      ++|+|.++++||+.+....                                            .+.+|...|++++.+++
T Consensus       252 T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d  331 (603)
T KOG0318|consen  252 TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD  331 (603)
T ss_pred             EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC
Confidence            9999999999998765310                                            13479999999999999


Q ss_pred             CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC-CeEEEEEcCCeEEEEeCCCCC-----------Cc
Q 019384          112 AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG-NRLVVATAGRHVNVYDLRNMS-----------QP  179 (342)
Q Consensus       112 ~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~-~~~~~~s~d~~v~iwd~~~~~-----------~~  179 (342)
                      ++.|+||+.||.|.-||..++...   .+....+...+..+.... +.+++++.|.++++.++....           +|
T Consensus       332 ~~~i~SgsyDG~I~~W~~~~g~~~---~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP  408 (603)
T KOG0318|consen  332 GKTIYSGSYDGHINSWDSGSGTSD---RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP  408 (603)
T ss_pred             CCEEEeeccCceEEEEecCCcccc---ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCc
Confidence            999999999999999998765442   122223455677777765 678889999999998763211           11


Q ss_pred             c--------------------------cccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeE
Q 019384          180 E--------------------------QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH  233 (342)
Q Consensus       180 ~--------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h  233 (342)
                      .                          .....++.++..+++++|++..+++|..|+.+.  +|.+........-.+.  
T Consensus       409 ~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvh--vysl~g~~l~ee~~~~--  484 (603)
T KOG0318|consen  409 KGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVH--VYSLSGDELKEEAKLL--  484 (603)
T ss_pred             eeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEE--EEEecCCcccceeeee--
Confidence            0                          000122345567899999999999999999865  4766543322222222  


Q ss_pred             EecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeee-ccCCCCcceEEEEECCCCCEEEEEEeccccCCC
Q 019384          234 RKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLY-QYSKYPTSIAALSFSRDGRLLAVASSYTFEEGD  312 (342)
Q Consensus       234 ~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~-~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~  312 (342)
                             .|..+|++++||||+.+||+|...+.|.+||+++.+... .+.-|.++|++|+|||+.++||+||-+.     
T Consensus       485 -------~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt-----  552 (603)
T KOG0318|consen  485 -------EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDT-----  552 (603)
T ss_pred             -------cccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccc-----
Confidence                   233479999999999999999999999999999876532 3445999999999999999999999877     


Q ss_pred             CCCCCCcEEEEEcc
Q 019384          313 KPHEPDAIFVRSVN  326 (342)
Q Consensus       313 ~~~~~~~~~~~~~~  326 (342)
                            +|++|+++
T Consensus       553 ------~Viiysv~  560 (603)
T KOG0318|consen  553 ------NVIIYSVK  560 (603)
T ss_pred             ------eEEEEEcc
Confidence                  57777664

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.3e-38  Score=255.77  Aligned_cols=260  Identities=20%  Similarity=0.279  Sum_probs=209.5

Q ss_pred             CCeEEEEeCCCcEEEEECCCceeeeeeecCC-ceEEEEEeCCCCeEEEecCCcEEEEEeccCc---eeecccCCcceeEE
Q 019384           31 SDHLLVSSWDKSVRLYDASANVLRGEFMHGG-PVLDCCFHDDSSGFSASADHTVRRLVFSHGK---EDILGKHDAPVRCI  106 (342)
Q Consensus        31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~-~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~---~~~~~~h~~~V~~~  106 (342)
                      .-+|+|+|+|.|||+|.+.+|.+..++.|.+ .|+++...|++..+.++....||+||+.+.+   ...+.+|++.|.++
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence            3578999999999999999999999998875 5899999999999888889999999998876   35689999999999


Q ss_pred             EEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC--eEEEEEcCCeEEEEeCCCCCCcccccc
Q 019384          107 EYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN--RLVVATAGRHVNVYDLRNMSQPEQRRE  184 (342)
Q Consensus       107 ~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~--~~~~~s~d~~v~iwd~~~~~~~~~~~~  184 (342)
                      .|..+|+.++|||+||++||||+|....     ...+.+...|.++.+.++  .++++..+|.|++||+++.....+ ..
T Consensus        90 gF~~dgrWMyTgseDgt~kIWdlR~~~~-----qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~-li  163 (311)
T KOG0315|consen   90 GFQCDGRWMYTGSEDGTVKIWDLRSLSC-----QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE-LI  163 (311)
T ss_pred             EEeecCeEEEecCCCceEEEEeccCccc-----chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc-cC
Confidence            9999999999999999999999997433     223334455666776665  789999999999999987643221 11


Q ss_pred             cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcc----cceeeeEEecCCCCceeeeeeEEEEcCCCCeEEE
Q 019384          185 SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAK----KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFAT  260 (342)
Q Consensus       185 ~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~----~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~s  260 (342)
                      +.....+.++...|+|..++.+...|+.  ++|++-......    ...++.|..         =+..+.+|||+++||+
T Consensus       164 Pe~~~~i~sl~v~~dgsml~a~nnkG~c--yvW~l~~~~~~s~l~P~~k~~ah~~---------~il~C~lSPd~k~lat  232 (311)
T KOG0315|consen  164 PEDDTSIQSLTVMPDGSMLAAANNKGNC--YVWRLLNHQTASELEPVHKFQAHNG---------HILRCLLSPDVKYLAT  232 (311)
T ss_pred             CCCCcceeeEEEcCCCcEEEEecCCccE--EEEEccCCCccccceEhhheecccc---------eEEEEEECCCCcEEEe
Confidence            2222456788899999998888777764  668875421111    123444443         3778999999999999


Q ss_pred             ecCCCeEEEEeCCCc-eeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          261 GGCDGFVNVWDGNNK-KRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       261 gs~Dg~I~iWd~~~~-~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      +|.|.+++||+.++. +...++++|+.++++.+||.||+||++++++.
T Consensus       233 ~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~  280 (311)
T KOG0315|consen  233 CSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDH  280 (311)
T ss_pred             ecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence            999999999999987 55567899999999999999999999999865

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.6e-37  Score=254.86  Aligned_cols=276  Identities=20%  Similarity=0.293  Sum_probs=224.5

Q ss_pred             CccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-eeeeeeecCCceEEEEEeCCCCeE-EEecCCcEEEEEe
Q 019384           11 GRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-VLRGEFMHGGPVLDCCFHDDSSGF-SASADHTVRRLVF   88 (342)
Q Consensus        11 ~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-~~~~~~~h~~~V~~~~~~~~~~~~-s~s~D~~i~~w~~   88 (342)
                      .+-...+|.+.|+++.|++|+++|+|+|.||.+.|||.-+. +.........-|..|+|+|.+..+ .|+.|+...+|++
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l  126 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL  126 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence            34445799999999999999999999999999999998654 333333456678999999888765 6788999999999


Q ss_pred             ccCc-------eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---CCe
Q 019384           89 SHGK-------EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---GNR  158 (342)
Q Consensus        89 ~~~~-------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~~~  158 (342)
                      .+.+       .+.+.+|++.+.|+.|.+ +..|+|+|.|.++.+||++++..    ....+.|...|.++++.   ++.
T Consensus       127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~----~~~f~GH~gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQ----TQVFHGHTGDVMSLSLSPSDGNT  201 (343)
T ss_pred             ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceE----EEEecCCcccEEEEecCCCCCCe
Confidence            8662       245789999999999987 55899999999999999986532    12223456677776664   579


Q ss_pred             EEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384          159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA  238 (342)
Q Consensus       159 ~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~  238 (342)
                      +++++.|+.-++||+|.+.......  .+...++.|.|+|+|..+++++.|++.+  +||++.......|.   |.    
T Consensus       202 FvSg~cD~~aklWD~R~~~c~qtF~--ghesDINsv~ffP~G~afatGSDD~tcR--lyDlRaD~~~a~ys---~~----  270 (343)
T KOG0286|consen  202 FVSGGCDKSAKLWDVRSGQCVQTFE--GHESDINSVRFFPSGDAFATGSDDATCR--LYDLRADQELAVYS---HD----  270 (343)
T ss_pred             EEecccccceeeeeccCcceeEeec--ccccccceEEEccCCCeeeecCCCceeE--EEeecCCcEEeeec---cC----
Confidence            9999999999999999874433222  2344688999999999999999999875  59998765554443   11    


Q ss_pred             CCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEE
Q 019384          239 GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       239 ~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s  304 (342)
                        ....+|++|+||..|++|..|..|.++.+||.-.++.+..+.+|.++|.++..+|||.-|++||
T Consensus       271 --~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgS  334 (343)
T KOG0286|consen  271 --SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGS  334 (343)
T ss_pred             --cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecc
Confidence              2234799999999999999999999999999999999999999999999999999999999887

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-35  Score=241.02  Aligned_cols=282  Identities=23%  Similarity=0.294  Sum_probs=215.5

Q ss_pred             CCCCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCC-----ce-eeeeeecCCceEEEEEeCCCCe-EEEecCCcEEE
Q 019384           14 LGNPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASA-----NV-LRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRR   85 (342)
Q Consensus        14 ~~~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~-----~~-~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~   85 (342)
                      ..+.|.+.|++++..+. .+.|++++.|.++.+|++..     |. .+...+|+..|..+..++++.. +++|.|+++++
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrl   89 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRL   89 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEE
Confidence            34899999999999986 67889999999999999854     22 4566789999999999877665 69999999999


Q ss_pred             EEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC----eEE
Q 019384           86 LVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN----RLV  160 (342)
Q Consensus        86 w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~----~~~  160 (342)
                      ||+.+++ .+.|.+|+.-|.+++|++|+.+|+|||-|++|++|++-..-.   -.+....+..-|.++.+.|+    .|+
T Consensus        90 WDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck---~t~~~~~~~~WVscvrfsP~~~~p~Iv  166 (315)
T KOG0279|consen   90 WDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK---YTIHEDSHREWVSCVRFSPNESNPIIV  166 (315)
T ss_pred             EEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE---EEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence            9999976 467899999999999999999999999999999999753211   11222211333445555443    789


Q ss_pred             EEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCC
Q 019384          161 VATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGR  240 (342)
Q Consensus       161 ~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~  240 (342)
                      +++.|++|++||+++.+....  .......++.+.++|||...++|..++..  .+||+++.+.  .+.+.+        
T Consensus       167 s~s~DktvKvWnl~~~~l~~~--~~gh~~~v~t~~vSpDGslcasGgkdg~~--~LwdL~~~k~--lysl~a--------  232 (315)
T KOG0279|consen  167 SASWDKTVKVWNLRNCQLRTT--FIGHSGYVNTVTVSPDGSLCASGGKDGEA--MLWDLNEGKN--LYSLEA--------  232 (315)
T ss_pred             EccCCceEEEEccCCcchhhc--cccccccEEEEEECCCCCEEecCCCCceE--EEEEccCCce--eEeccC--------
Confidence            999999999999998643222  12334557888999999999999888875  5699976533  233221        


Q ss_pred             ceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC----CC-----CcceEEEEECCCCCEEEEEEeccccCC
Q 019384          241 DIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS----KY-----PTSIAALSFSRDGRLLAVASSYTFEEG  311 (342)
Q Consensus       241 ~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~----~~-----~~~V~~v~~spdg~~las~s~~~~~~~  311 (342)
                        .-+|++++|+|+...|+.+ .+-.|+|||.+++.++..++    +.     ...+.+++||+||..|.+|-.+.    
T Consensus       233 --~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~----  305 (315)
T KOG0279|consen  233 --FDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN----  305 (315)
T ss_pred             --CCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC----
Confidence              1269999999987666555 45569999999887776553    22     33578999999999999887665    


Q ss_pred             CCCCCCCcEEEEEcc
Q 019384          312 DKPHEPDAIFVRSVN  326 (342)
Q Consensus       312 ~~~~~~~~~~~~~~~  326 (342)
                             .|.+|++.
T Consensus       306 -------~irv~qv~  313 (315)
T KOG0279|consen  306 -------VIRVWQVA  313 (315)
T ss_pred             -------cEEEEEee
Confidence                   68888763

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.6e-34  Score=229.77  Aligned_cols=276  Identities=22%  Similarity=0.328  Sum_probs=223.3

Q ss_pred             ccCC--CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEe-CCCCeEEEecCCcEEEEE
Q 019384           12 RELG--NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFH-DDSSGFSASADHTVRRLV   87 (342)
Q Consensus        12 ~~~~--~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~   87 (342)
                      ++|.  ..+.+.|.+++|+-||++.+|++.|.|||+|+...+.++.+ .+|...|.+++.+ ++.++.+|+.|.-+.+||
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            3444  67789999999999999999999999999999988876655 5799999999987 566678999999999999


Q ss_pred             eccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC
Q 019384           88 FSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR  166 (342)
Q Consensus        88 ~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~  166 (342)
                      +.+++ .+.+++|..+|+.++|+-+...++|||.|.++++||.++....+.+++..  ....+.++...++.|+.++.||
T Consensus        88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde--a~D~V~Si~v~~heIvaGS~DG  165 (307)
T KOG0316|consen   88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE--AKDGVSSIDVAEHEIVAGSVDG  165 (307)
T ss_pred             cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh--hcCceeEEEecccEEEeeccCC
Confidence            99998 56899999999999999988999999999999999998765544444433  3345777888888999999999


Q ss_pred             eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384          167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV  246 (342)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v  246 (342)
                      ++|.||+|.+.....    -+..+++|++++++++..+.++.+++++  +.|-.+.+....|  .+|...+      +.+
T Consensus       166 tvRtydiR~G~l~sD----y~g~pit~vs~s~d~nc~La~~l~stlr--LlDk~tGklL~sY--kGhkn~e------ykl  231 (307)
T KOG0316|consen  166 TVRTYDIRKGTLSSD----YFGHPITSVSFSKDGNCSLASSLDSTLR--LLDKETGKLLKSY--KGHKNME------YKL  231 (307)
T ss_pred             cEEEEEeecceeehh----hcCCcceeEEecCCCCEEEEeeccceee--ecccchhHHHHHh--cccccce------eee
Confidence            999999998743222    3445689999999999999999999765  5777655444333  4554432      223


Q ss_pred             eEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcc-eEEEEECCCCCEEEEEE
Q 019384          247 NAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTS-IAALSFSRDGRLLAVAS  304 (342)
Q Consensus       247 ~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~-V~~v~~spdg~~las~s  304 (342)
                       .++++.....+++||+||.|++||+.+...+..+.-+... |.++++.|.-.-|.++.
T Consensus       232 -dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~  289 (307)
T KOG0316|consen  232 -DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT  289 (307)
T ss_pred             -eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec
Confidence             3566666778999999999999999998888888777666 89999999877555554

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.1e-35  Score=255.97  Aligned_cols=237  Identities=20%  Similarity=0.209  Sum_probs=193.7

Q ss_pred             CCCCCCeEEEEEcCC--CCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccC
Q 019384           16 NPPSDGISNLRFSNH--SDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHG   91 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~--~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~   91 (342)
                      .+|...|.++.|+|.  +..||||+.||++++|++++... ...-+|...|..++|+|+++. .|+|.|.+.++||+.++
T Consensus       214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk  293 (459)
T KOG0272|consen  214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK  293 (459)
T ss_pred             eccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccc
Confidence            689999999999997  56899999999999999988554 445579999999999988876 59999999999999998


Q ss_pred             cee-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE--eccCCeEEEEEcCCeE
Q 019384           92 KED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL--SLVGNRLVVATAGRHV  168 (342)
Q Consensus        92 ~~~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~--s~~~~~~~~~s~d~~v  168 (342)
                      .+. ..+||...|.+|+|.+||.+++||+.|..=||||++++.+  .+.+..  |...|+++  +++|..+++|+.|+++
T Consensus       294 ~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~--im~L~g--H~k~I~~V~fsPNGy~lATgs~Dnt~  369 (459)
T KOG0272|consen  294 SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC--IMFLAG--HIKEILSVAFSPNGYHLATGSSDNTC  369 (459)
T ss_pred             hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcE--EEEecc--cccceeeEeECCCceEEeecCCCCcE
Confidence            865 4589999999999999999999999999999999998654  344554  34445554  5556689999999999


Q ss_pred             EEEeCCCCCCcccccccccceeeEEEEEee-CCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384          169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYP-NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN  247 (342)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  247 (342)
                      ++||++..+...+  .+++...+..|.+.| .|.++++++.|++++|  |...+.+..  ..+.+|..         .|.
T Consensus       370 kVWDLR~r~~ly~--ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ki--Ws~~~~~~~--ksLaGHe~---------kV~  434 (459)
T KOG0272|consen  370 KVWDLRMRSELYT--IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKI--WSTRTWSPL--KSLAGHEG---------KVI  434 (459)
T ss_pred             EEeeeccccccee--cccccchhhheEecccCCeEEEEcccCcceee--ecCCCcccc--hhhcCCcc---------ceE
Confidence            9999997544222  233444567788998 6778899999998755  887654332  34566654         599


Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEe
Q 019384          248 AIAFHPIYGTFATGGCDGFVNVWD  271 (342)
Q Consensus       248 ~v~~sp~~~~l~sgs~Dg~I~iWd  271 (342)
                      +|..+||+.+++|++.|++|++|.
T Consensus       435 s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  435 SLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EEEeccCCceEEEeccCceeeecc
Confidence            999999999999999999999995

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4.5e-34  Score=236.55  Aligned_cols=281  Identities=20%  Similarity=0.244  Sum_probs=220.4

Q ss_pred             cCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc--eeeeeeecCCceEEEEEeCC-CCeEEEecCCcEEEEEec
Q 019384           13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN--VLRGEFMHGGPVLDCCFHDD-SSGFSASADHTVRRLVFS   89 (342)
Q Consensus        13 ~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~--~~~~~~~h~~~V~~~~~~~~-~~~~s~s~D~~i~~w~~~   89 (342)
                      ++...|++.|+.+.|+|+|..||||+.|..|-||++...  ..-...+|+++|..+.|..+ ..++++|.|.+++.||.+
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~  120 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE  120 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence            445789999999999999999999999999999998653  23344589999999999855 456899999999999999


Q ss_pred             cCc-eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcC
Q 019384           90 HGK-EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAG  165 (342)
Q Consensus        90 ~~~-~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d  165 (342)
                      +++ .+...+|.+.|++++-+.-| ..+.|++.|+++|+||.|+...     ...+...-.+.++.+  .++.+++|+-|
T Consensus       121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-----~~t~~~kyqltAv~f~d~s~qv~sggId  195 (338)
T KOG0265|consen  121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-----IKTFENKYQLTAVGFKDTSDQVISGGID  195 (338)
T ss_pred             cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-----hhccccceeEEEEEecccccceeecccc
Confidence            998 45788999999999855555 4568899999999999985332     122212223444554  56789999999


Q ss_pred             CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcc--cceeeeEEecCCCCcee
Q 019384          166 RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAK--KYAFKCHRKSEAGRDIV  243 (342)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~--~~~~~~h~~~~~~~~~~  243 (342)
                      +.|++||++.......  .......++.++.+++|..+.+.++|.++.  +||.+......  ...+.+|....     .
T Consensus       196 n~ikvWd~r~~d~~~~--lsGh~DtIt~lsls~~gs~llsnsMd~tvr--vwd~rp~~p~~R~v~if~g~~hnf-----e  266 (338)
T KOG0265|consen  196 NDIKVWDLRKNDGLYT--LSGHADTITGLSLSRYGSFLLSNSMDNTVR--VWDVRPFAPSQRCVKIFQGHIHNF-----E  266 (338)
T ss_pred             CceeeeccccCcceEE--eecccCceeeEEeccCCCccccccccceEE--EEEecccCCCCceEEEeecchhhh-----h
Confidence            9999999988654322  223445688999999999999999998765  59987543222  22333333211     1


Q ss_pred             eeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          244 YPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       244 ~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      .....++|+|++..+..|+.|+.+++||......+..++||.+.|++++|.|...+|.+++++.
T Consensus       267 knlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk  330 (338)
T KOG0265|consen  267 KNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDK  330 (338)
T ss_pred             hhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCc
Confidence            1355689999999999999999999999999889999999999999999999999999999876

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.4e-34  Score=244.98  Aligned_cols=293  Identities=16%  Similarity=0.172  Sum_probs=221.7

Q ss_pred             CCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC-ce---eeeeeecCCceEEEEEeCCC-CeEEEecCCc
Q 019384            8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA-NV---LRGEFMHGGPVLDCCFHDDS-SGFSASADHT   82 (342)
Q Consensus         8 ~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~-~~---~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~   82 (342)
                      |...-..-..|.++|+.+.||++|++|||++.|.|+.+|++.. ..   ..+..+|..+|.-+.|+||+ .+++|+.|..
T Consensus       213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~  292 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV  292 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence            3444444568999999999999999999999999999999854 22   34556899999999999765 5679999999


Q ss_pred             EEEEEeccCceeecc--cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEE--EEeccCCe
Q 019384           83 VRRLVFSHGKEDILG--KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVY--SLSLVGNR  158 (342)
Q Consensus        83 i~~w~~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~--~~s~~~~~  158 (342)
                      +++||..++......  +|...+.|++|.||+..+++|+.|++|..||++.....   ...... ..++.  ++..+|+.
T Consensus       293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~---~W~gvr-~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG---NWEGVR-DPKVHDLAITYDGKY  368 (519)
T ss_pred             eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhh---cccccc-cceeEEEEEcCCCcE
Confidence            999999999865443  45688999999999999999999999999998743211   111111 13344  45567889


Q ss_pred             EEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384          159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA  238 (342)
Q Consensus       159 ~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~  238 (342)
                      +++.+.|..|++++..+....   ........++++..+.+++.+++.-.+..+  .+||+.+...+++|  .+|...  
T Consensus       369 vl~v~~d~~i~l~~~e~~~dr---~lise~~~its~~iS~d~k~~LvnL~~qei--~LWDl~e~~lv~kY--~Ghkq~--  439 (519)
T KOG0293|consen  369 VLLVTVDKKIRLYNREARVDR---GLISEEQPITSFSISKDGKLALVNLQDQEI--HLWDLEENKLVRKY--FGHKQG--  439 (519)
T ss_pred             EEEEecccceeeechhhhhhh---ccccccCceeEEEEcCCCcEEEEEcccCee--EEeecchhhHHHHh--hccccc--
Confidence            999999999999998653211   011222357788889999988877777655  56999866555554  345432  


Q ss_pred             CCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCC-CEEEEEEeccccCCCCCCCC
Q 019384          239 GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDG-RLLAVASSYTFEEGDKPHEP  317 (342)
Q Consensus       239 ~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg-~~las~s~~~~~~~~~~~~~  317 (342)
                          .+-|.+|--.-+..++++||+|+.|+||+..+++++..+.||...|++++|+|.. +++|++|.++          
T Consensus       440 ----~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg----------  505 (519)
T KOG0293|consen  440 ----HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG----------  505 (519)
T ss_pred             ----ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC----------
Confidence                1235543323455799999999999999999999999999999999999999954 5788777666          


Q ss_pred             CcEEEEEccCC
Q 019384          318 DAIFVRSVNEI  328 (342)
Q Consensus       318 ~~~~~~~~~~~  328 (342)
                       .|.+|..+..
T Consensus       506 -tIRIWg~~~~  515 (519)
T KOG0293|consen  506 -TIRIWGPSDN  515 (519)
T ss_pred             -eEEEecCCcc
Confidence             5888876543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.6e-34  Score=252.75  Aligned_cols=291  Identities=21%  Similarity=0.323  Sum_probs=222.8

Q ss_pred             cccCCCCCCCccCC--------------CCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCC-ce-eeeeeecCCceE
Q 019384            2 TAVHPPPTSGRELG--------------NPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASA-NV-LRGEFMHGGPVL   64 (342)
Q Consensus         2 ~~~~~~~~~~~~~~--------------~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~-~~-~~~~~~h~~~V~   64 (342)
                      +|||+|-+.+.+|+              .+|..+|.++.|.| .+.+|+|++.|+.|+||++.. ++ +++..+|..+|.
T Consensus       183 ~~l~~P~dv~vnlR~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vr  262 (503)
T KOG0282|consen  183 SYLQKPKDVGVNLREERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVR  262 (503)
T ss_pred             ccccCCcccCCccccceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhh
Confidence            58999999999996              37889999999999 889999999999999999865 44 556678999999


Q ss_pred             EEEEeCCC-CeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeee
Q 019384           65 DCCFHDDS-SGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGT  142 (342)
Q Consensus        65 ~~~~~~~~-~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~  142 (342)
                      +++|+..+ +++++|.|+.+++||.+++.+..--.-...++|+.|+|++ +.|++|+.|+.|+.||+|++..     ++.
T Consensus       263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-----vqe  337 (503)
T KOG0282|consen  263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-----VQE  337 (503)
T ss_pred             hhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-----HHH
Confidence            99999554 5789999999999999999865433334568899999998 7889999999999999997542     222


Q ss_pred             c-CCCCcEEEEec--cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeec
Q 019384          143 Y-PQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDL  219 (342)
Q Consensus       143 ~-~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~  219 (342)
                      + .+-..+..+.+  .+..+++.+.|+.+++|+.+.......... .......|+..+|+++.++.=+.++.+.+  |.+
T Consensus       338 Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~-~~~hsmP~~~~~P~~~~~~aQs~dN~i~i--fs~  414 (503)
T KOG0282|consen  338 YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIAD-PEMHTMPCLTLHPNGKWFAAQSMDNYIAI--FST  414 (503)
T ss_pred             HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcc-hhhccCcceecCCCCCeehhhccCceEEE--Eec
Confidence            2 22234444444  567899999999999999987532211111 11122457889999999888888887654  654


Q ss_pred             hhhh-hcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCC
Q 019384          220 SEAS-QAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGR  298 (342)
Q Consensus       220 ~~~~-~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~  298 (342)
                      .... ..+...+.+|.-.  |    + -..|.|||||.+|++|..||.+.+||.++-+.+..++.|...|..+.|.|-..
T Consensus       415 ~~~~r~nkkK~feGh~va--G----y-s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~  487 (503)
T KOG0282|consen  415 VPPFRLNKKKRFEGHSVA--G----Y-SCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP  487 (503)
T ss_pred             ccccccCHhhhhcceecc--C----c-eeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCc
Confidence            3221 1222344566432  1    2 24589999999999999999999999999999999999999999999999877


Q ss_pred             EEEEEEecc
Q 019384          299 LLAVASSYT  307 (342)
Q Consensus       299 ~las~s~~~  307 (342)
                      --+++++++
T Consensus       488 Skvat~~w~  496 (503)
T KOG0282|consen  488 SKVATCGWD  496 (503)
T ss_pred             ceeEecccC
Confidence            544455444

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.8e-33  Score=244.13  Aligned_cols=282  Identities=17%  Similarity=0.260  Sum_probs=218.3

Q ss_pred             CCCCCCCccCCCCCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEECCCc--e------eeeee-------ecCCceEEEEE
Q 019384            5 HPPPTSGRELGNPPSDGISNLRFSNHSD-HLLVSSWDKSVRLYDASAN--V------LRGEF-------MHGGPVLDCCF   68 (342)
Q Consensus         5 ~~~~~~~~~~~~~~~~~V~~l~fs~~~~-~l~s~s~Dgti~vwd~~~~--~------~~~~~-------~h~~~V~~~~~   68 (342)
                      |-|...-+.++  |+..|.+.+|+|-.+ .|++++.|-+.|+|++...  .      +++-+       ..+..|++++|
T Consensus       166 ~I~~~~~kvl~--~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W  243 (524)
T KOG0273|consen  166 EIPSSKAKVLR--HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW  243 (524)
T ss_pred             cccccceeecc--CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe
Confidence            34444444454  999999999999776 8999999999999998641  1      11111       12357999999


Q ss_pred             eCCCC-eEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC
Q 019384           69 HDDSS-GFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE  147 (342)
Q Consensus        69 ~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~  147 (342)
                      +.++. +++|+.||.+++|+........+..|.++|.++.|+.+|++|++++-|+++.+||..+++...  .+..+.  .
T Consensus       244 n~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q--~f~~~s--~  319 (524)
T KOG0273|consen  244 NNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ--QFEFHS--A  319 (524)
T ss_pred             cCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE--eeeecc--C
Confidence            85555 579999999999998877778899999999999999999999999999999999986544321  122222  2


Q ss_pred             cEEEEec-cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcc
Q 019384          148 RVYSLSL-VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAK  226 (342)
Q Consensus       148 ~v~~~s~-~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~  226 (342)
                      ....+.+ +.+.+++++.|+.|+++.+... .|..... .+...+.++.|.|.+..++++|.|++++  +|+.....  .
T Consensus       320 ~~lDVdW~~~~~F~ts~td~~i~V~kv~~~-~P~~t~~-GH~g~V~alk~n~tg~LLaS~SdD~Tlk--iWs~~~~~--~  393 (524)
T KOG0273|consen  320 PALDVDWQSNDEFATSSTDGCIHVCKVGED-RPVKTFI-GHHGEVNALKWNPTGSLLASCSDDGTLK--IWSMGQSN--S  393 (524)
T ss_pred             CccceEEecCceEeecCCCceEEEEEecCC-Ccceeee-cccCceEEEEECCCCceEEEecCCCeeE--eeecCCCc--c
Confidence            2234555 3458999999999999988654 3333332 3556789999999999999999999875  58864321  2


Q ss_pred             cceeeeEEecCCCCceeeeeeEEEEcCCC---------CeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCC
Q 019384          227 KYAFKCHRKSEAGRDIVYPVNAIAFHPIY---------GTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDG  297 (342)
Q Consensus       227 ~~~~~~h~~~~~~~~~~~~v~~v~~sp~~---------~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg  297 (342)
                      ...+..|.+         .|.++.|+|+|         .++++++.|++|++||+..+.+++.|.+|+.+|++++|||+|
T Consensus       394 ~~~l~~Hsk---------ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g  464 (524)
T KOG0273|consen  394 VHDLQAHSK---------EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG  464 (524)
T ss_pred             hhhhhhhcc---------ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC
Confidence            233455654         48888888863         579999999999999999999999999999999999999999


Q ss_pred             CEEEEEEecc
Q 019384          298 RLLAVASSYT  307 (342)
Q Consensus       298 ~~las~s~~~  307 (342)
                      +|||+|+.+.
T Consensus       465 ~ylAsGs~dg  474 (524)
T KOG0273|consen  465 RYLASGSLDG  474 (524)
T ss_pred             cEEEecCCCC
Confidence            9999999754

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=6.3e-34  Score=230.25  Aligned_cols=275  Identities=20%  Similarity=0.251  Sum_probs=222.5

Q ss_pred             CCCCCCCCeEEEEEcC---CCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeCCCC-eEEEecCCcEEEEEe
Q 019384           14 LGNPPSDGISNLRFSN---HSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHDDSS-GFSASADHTVRRLVF   88 (342)
Q Consensus        14 ~~~~~~~~V~~l~fs~---~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~   88 (342)
                      .|.+|+..|-.|+|||   +|..|+|++.|+.-.|-+-.++..+.+ .+|++.|+.++...+.. .+++++|-+.++||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            4689999999999996   788999999999999988888876655 58999999999975544 468999999999999


Q ss_pred             ccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeE
Q 019384           89 SHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHV  168 (342)
Q Consensus        89 ~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v  168 (342)
                      -++.+..--.|.-.|.+++|+.|.++|+||+.++-+|++|++...... +.+..+....+-.-++...+.|++.+.|++|
T Consensus        89 ~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV  167 (334)
T KOG0278|consen   89 VTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWCHEDKCILSSADDKTV  167 (334)
T ss_pred             hhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence            888877667788899999999999999999999999999998654432 2233333344445567777899999999999


Q ss_pred             EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384          169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA  248 (342)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  248 (342)
                      |+||.+++.... .  ..++.+++++.++++|..+.++- .+.  +.|||.......+.+.+++            .|.+
T Consensus       168 RLWD~rTgt~v~-s--L~~~s~VtSlEvs~dG~ilTia~-gss--V~Fwdaksf~~lKs~k~P~------------nV~S  229 (334)
T KOG0278|consen  168 RLWDHRTGTEVQ-S--LEFNSPVTSLEVSQDGRILTIAY-GSS--VKFWDAKSFGLLKSYKMPC------------NVES  229 (334)
T ss_pred             EEEEeccCcEEE-E--EecCCCCcceeeccCCCEEEEec-Cce--eEEeccccccceeeccCcc------------cccc
Confidence            999999974332 1  23445678888999998665543 333  4689986544444443332            5888


Q ss_pred             EEEcCCCCeEEEecCCCeEEEEeCCCceeeecc-CCCCcceEEEEECCCCCEEEEEEecc
Q 019384          249 IAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQY-SKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       249 v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      ...+|+..+++.|++|..++.||..++..+..+ ++|.++|.|+.|||||...|+||.++
T Consensus       230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG  289 (334)
T KOG0278|consen  230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDG  289 (334)
T ss_pred             ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCc
Confidence            999999999999999999999999999988876 89999999999999999999999876

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.2e-33  Score=240.87  Aligned_cols=280  Identities=20%  Similarity=0.269  Sum_probs=222.1

Q ss_pred             CCCCccCC-CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCCC-eEEEecCCcEE
Q 019384            8 PTSGRELG-NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDSS-GFSASADHTVR   84 (342)
Q Consensus         8 ~~~~~~~~-~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~   84 (342)
                      ++....+. |.-...|+.|+|.|+|++|++|+..|.+.||+...-.. ....+|..+|.++.|++++. ++||..+|.|+
T Consensus        84 ~tKf~h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iK  163 (464)
T KOG0284|consen   84 TTKFVHTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIK  163 (464)
T ss_pred             ccceEeccccccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEE
Confidence            34444555 77788999999999999999999999999999865322 22347999999999986665 57999999999


Q ss_pred             EEEeccCceeecccCC-cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC--eEEE
Q 019384           85 RLVFSHGKEDILGKHD-APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN--RLVV  161 (342)
Q Consensus        85 ~w~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~--~~~~  161 (342)
                      +|+........+..|. ..|++++|+|.+..|+|+|.|++|+|||......+  ..+..  +...+.++++.+.  .+++
T Consensus       164 yWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee--~vL~G--HgwdVksvdWHP~kgLias  239 (464)
T KOG0284|consen  164 YWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE--RVLRG--HGWDVKSVDWHPTKGLIAS  239 (464)
T ss_pred             ecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh--heecc--CCCCcceeccCCccceeEE
Confidence            9998877776665554 89999999999999999999999999998754332  22333  3345667777664  7889


Q ss_pred             EEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCc
Q 019384          162 ATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRD  241 (342)
Q Consensus       162 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~  241 (342)
                      ++.|..|++||-++++....  .+.++..+..+.|.++++.+++++.|..+  ++||++.-  ...+..++|++.     
T Consensus       240 gskDnlVKlWDprSg~cl~t--lh~HKntVl~~~f~~n~N~Llt~skD~~~--kv~DiR~m--kEl~~~r~Hkkd-----  308 (464)
T KOG0284|consen  240 GSKDNLVKLWDPRSGSCLAT--LHGHKNTVLAVKFNPNGNWLLTGSKDQSC--KVFDIRTM--KELFTYRGHKKD-----  308 (464)
T ss_pred             ccCCceeEeecCCCcchhhh--hhhccceEEEEEEcCCCCeeEEccCCceE--EEEehhHh--HHHHHhhcchhh-----
Confidence            99999999999999865432  23445567889999999999999999865  56999743  334556788773     


Q ss_pred             eeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCCceeeecc-CCCCcceEEEEECCCCCEEEEEEec
Q 019384          242 IVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNNKKRLYQY-SKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       242 ~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                          |+++.|||-.+ +|.+|+.||.|..|.+...+.+..+ ..|...|++++|.|=|.+||+||.+
T Consensus       309 ----v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd  371 (464)
T KOG0284|consen  309 ----VTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSND  371 (464)
T ss_pred             ----heeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCC
Confidence                89999999755 6789999999999998855555433 4789999999999999999998864

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.3e-32  Score=252.65  Aligned_cols=281  Identities=22%  Similarity=0.242  Sum_probs=221.4

Q ss_pred             ccCCCCC-CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce--ee-eeeecCCceEEEEEeCCCC-eEEEecCCcEEEE
Q 019384           12 RELGNPP-SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV--LR-GEFMHGGPVLDCCFHDDSS-GFSASADHTVRRL   86 (342)
Q Consensus        12 ~~~~~~~-~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~--~~-~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w   86 (342)
                      +.+...+ ...|.++.|+++|+.|++++.|+++++|+....+  +. ...+|...|.+++|+++++ +++++.|+++++|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW  230 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence            4444444 7899999999999999999999999999996554  33 3358999999999998775 5699999999999


Q ss_pred             EeccC-c-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc
Q 019384           87 VFSHG-K-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA  164 (342)
Q Consensus        87 ~~~~~-~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~  164 (342)
                      |+... . .+.+.+|...|++++|+|+++++++|+.|++||+||+++++.  ...+..+......+++..+++.+++++.
T Consensus       231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~--~~~l~~hs~~is~~~f~~d~~~l~s~s~  308 (456)
T KOG0266|consen  231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC--VRKLKGHSDGISGLAFSPDGNLLVSASY  308 (456)
T ss_pred             eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE--EEeeeccCCceEEEEECCCCCEEEEcCC
Confidence            99444 3 467889999999999999999999999999999999987433  3344455444555566667789999999


Q ss_pred             CCeEEEEeCCCCCCc--cc-ccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCc
Q 019384          165 GRHVNVYDLRNMSQP--EQ-RRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRD  241 (342)
Q Consensus       165 d~~v~iwd~~~~~~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~  241 (342)
                      |+.|++||+.++...  .. ....... .+.++.++|++.+++++..++.+.  +||+......+.+  ..|...     
T Consensus       309 d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~--~w~l~~~~~~~~~--~~~~~~-----  378 (456)
T KOG0266|consen  309 DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLK--LWDLRSGKSVGTY--TGHSNL-----  378 (456)
T ss_pred             CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEE--EEEccCCcceeee--cccCCc-----
Confidence            999999999988621  11 1111112 578899999999999999998765  5998654333322  233221     


Q ss_pred             eeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCC-CcceEEEEECCCCCEEEEEEe
Q 019384          242 IVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKY-PTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       242 ~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-~~~V~~v~~spdg~~las~s~  305 (342)
                       ...+.+..+++.+.++++|+.|+.|++||..++..+..+.+| ...+..++++|...++++++.
T Consensus       379 -~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~  442 (456)
T KOG0266|consen  379 -VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSF  442 (456)
T ss_pred             -ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCc
Confidence             123445566889999999999999999999998889999999 889999999999999998874

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-31  Score=222.97  Aligned_cols=275  Identities=22%  Similarity=0.298  Sum_probs=212.9

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee-ecCCceEEEEEe-CCCCeEEEec--CCcEEEEEeccCc-
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF-MHGGPVLDCCFH-DDSSGFSASA--DHTVRRLVFSHGK-   92 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~-~h~~~V~~~~~~-~~~~~~s~s~--D~~i~~w~~~~~~-   92 (342)
                      ....|+++.|+++|.+|++++.|.+++|||..+++....+ .++-.|..++|. ++..++.++.  |.+||+.++...+ 
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            5779999999999999999999999999999988765554 455678889996 6666776666  8899999998776 


Q ss_pred             eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384           93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD  172 (342)
Q Consensus        93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd  172 (342)
                      .+.+.||...|.+++.+|-++.|+|+|.|++||+||++...++.  .+.  .....+.++++.|-.+|++...+.|++||
T Consensus        93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg--~l~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD  168 (311)
T KOG1446|consen   93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG--LLN--LSGRPIAAFDPEGLIFALANGSELIKLYD  168 (311)
T ss_pred             EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce--EEe--cCCCcceeECCCCcEEEEecCCCeEEEEE
Confidence            67899999999999999999999999999999999998654432  221  12344667777777788888878999999


Q ss_pred             CCCCCC-ccccccc--ccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384          173 LRNMSQ-PEQRRES--SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI  249 (342)
Q Consensus       173 ~~~~~~-~~~~~~~--~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  249 (342)
                      +|.... |.+....  .-...-+.+.|+|+|+.++++...+.+  ++.|.-.+.  ....+..+.....     -+ -..
T Consensus       169 ~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~--~~lDAf~G~--~~~tfs~~~~~~~-----~~-~~a  238 (311)
T KOG1446|consen  169 LRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFI--YLLDAFDGT--VKSTFSGYPNAGN-----LP-LSA  238 (311)
T ss_pred             ecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcE--EEEEccCCc--EeeeEeeccCCCC-----cc-eeE
Confidence            998733 3332221  112345778999999999998887755  446653332  2223333322110     02 356


Q ss_pred             EEcCCCCeEEEecCCCeEEEEeCCCceeeeccCC-CCcceEEEEECCCCCEEEEEEec
Q 019384          250 AFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSK-YPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       250 ~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~-~~~~V~~v~~spdg~~las~s~~  306 (342)
                      +|+||++++++|+.||+|++|++++++.+..+.+ +..++.++.|+|.-..+|++++.
T Consensus       239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~  296 (311)
T KOG1446|consen  239 TFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSN  296 (311)
T ss_pred             EECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCce
Confidence            8999999999999999999999999999988887 78899999999999999988863

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.1e-33  Score=258.76  Aligned_cols=263  Identities=25%  Similarity=0.295  Sum_probs=206.3

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc-eeecc
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK-EDILG   97 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~-~~~~~   97 (342)
                      ..+++|..|++|+..||.|-.|..|++|.+...+++.....       .+.  ...=+.++|-.+.+.|..... .+.+.
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~-------~~l--~~~d~~sad~~~~~~D~~~~~~~~~L~  448 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDA-------SDL--SNIDTESADVDVDMLDDDSSGTSRTLY  448 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccch-------hhh--ccccccccchhhhhccccCCceeEEee
Confidence            46899999999999999999999999999976554443211       110  011144555556666655544 45689


Q ss_pred             cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCC
Q 019384           98 KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMS  177 (342)
Q Consensus        98 ~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~  177 (342)
                      +|+++|+.+.|+|+.++|+|||.|+++|+|.+++....  .....+..+..-+.|++.|.++++++.|++-++|..... 
T Consensus       449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~--V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-  525 (707)
T KOG0263|consen  449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL--VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-  525 (707)
T ss_pred             cCCCceeeeeecccccceeeccCCcceeeeecccceeE--EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-
Confidence            99999999999999999999999999999999864431  222333344444566777789999999999999998764 


Q ss_pred             CcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCe
Q 019384          178 QPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGT  257 (342)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~  257 (342)
                      .+.+.. ..+-..+.|++|+|+..++++||.|.+++  +||...+..++.  +.+|..         +|.+++|||+|++
T Consensus       526 ~PlRif-aghlsDV~cv~FHPNs~Y~aTGSsD~tVR--lWDv~~G~~VRi--F~GH~~---------~V~al~~Sp~Gr~  591 (707)
T KOG0263|consen  526 KPLRIF-AGHLSDVDCVSFHPNSNYVATGSSDRTVR--LWDVSTGNSVRI--FTGHKG---------PVTALAFSPCGRY  591 (707)
T ss_pred             Cchhhh-cccccccceEEECCcccccccCCCCceEE--EEEcCCCcEEEE--ecCCCC---------ceEEEEEcCCCce
Confidence            332222 23334678999999999999999999875  599977665555  455554         7999999999999


Q ss_pred             EEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          258 FATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       258 l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      |++|++||.|.|||+.+++.+.++.+|.+.|.+|.||.||..||+|+.+.
T Consensus       592 LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn  641 (707)
T KOG0263|consen  592 LASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN  641 (707)
T ss_pred             EeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC
Confidence            99999999999999999999999999999999999999999999999864

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3e-32  Score=224.99  Aligned_cols=241  Identities=19%  Similarity=0.241  Sum_probs=195.8

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-------eeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEe
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-------VLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVF   88 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-------~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~   88 (342)
                      .-++.+|...+|+|.|+.+|.|+.|+...||+++..       ..+.+.+|.+-+.+|.|.++.+++++|.|.+..+||+
T Consensus        94 pl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDi  173 (343)
T KOG0286|consen   94 PLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDI  173 (343)
T ss_pred             ecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEc
Confidence            566889999999999999999999999999999743       1344568999999999999999999999999999999


Q ss_pred             ccCc-eeecccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC
Q 019384           89 SHGK-EDILGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR  166 (342)
Q Consensus        89 ~~~~-~~~~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~  166 (342)
                      +++. ...+.+|++-|.++++.| +++.|+||+.|++.+|||+|.+..  .+.+..+..-...+.|-+++..|++++.|+
T Consensus       174 e~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c--~qtF~ghesDINsv~ffP~G~afatGSDD~  251 (343)
T KOG0286|consen  174 ETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC--VQTFEGHESDINSVRFFPSGDAFATGSDDA  251 (343)
T ss_pred             ccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce--eEeecccccccceEEEccCCCeeeecCCCc
Confidence            9988 457899999999999999 889999999999999999997533  233433333333444555677899999999


Q ss_pred             eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384          167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV  246 (342)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v  246 (342)
                      +.|+||+|................+++++|+..|+.+..+..|.++.  +||.-..  .+.-.+.+|..         .|
T Consensus       252 tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~--vWDtlk~--e~vg~L~GHeN---------Rv  318 (343)
T KOG0286|consen  252 TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCN--VWDTLKG--ERVGVLAGHEN---------RV  318 (343)
T ss_pred             eeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCcee--Eeecccc--ceEEEeeccCC---------ee
Confidence            99999999864333222233445688999999999999998888765  5997432  33344556654         69


Q ss_pred             eEEEEcCCCCeEEEecCCCeEEEEe
Q 019384          247 NAIAFHPIYGTFATGGCDGFVNVWD  271 (342)
Q Consensus       247 ~~v~~sp~~~~l~sgs~Dg~I~iWd  271 (342)
                      +++..+|||..|+|||+|.++|||.
T Consensus       319 Scl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  319 SCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEEEECCCCcEEEecchhHheeecC
Confidence            9999999999999999999999994

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-32  Score=231.44  Aligned_cols=285  Identities=16%  Similarity=0.201  Sum_probs=223.7

Q ss_pred             CCCCCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeC-CCCeEEEecCCc
Q 019384            5 HPPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHD-DSSGFSASADHT   82 (342)
Q Consensus         5 ~~~~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~-~~~~~s~s~D~~   82 (342)
                      |+|+.+=+.-..+|...|+.+-|.|+-..+++++.|++|++||..++.+ ..+.+|.+.|.++.|.. +..+++++.|-.
T Consensus        94 wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~  173 (406)
T KOG0295|consen   94 WIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLS  173 (406)
T ss_pred             cCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccc
Confidence            4555444444456889999999999999999999999999999988764 45678999999999985 445679999999


Q ss_pred             EEEEEeccCc--eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEE
Q 019384           83 VRRLVFSHGK--EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLV  160 (342)
Q Consensus        83 i~~w~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~  160 (342)
                      +++||+++..  .+.+.+|.-.|.+++|-|.|+.|+|++.|.+|+.||+.++..  ...+..+..=.+++.+.-++..++
T Consensus       174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c--v~t~~~h~ewvr~v~v~~DGti~A  251 (406)
T KOG0295|consen  174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC--VKTFPGHSEWVRMVRVNQDGTIIA  251 (406)
T ss_pred             hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee--EEeccCchHhEEEEEecCCeeEEE
Confidence            9999998743  346788999999999999999999999999999999986543  222332222233445555677888


Q ss_pred             EEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeC---------------CceEEEEccCCeEEEEEeechhhhhc
Q 019384          161 VATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN---------------GTGYALSSVEGRVAMEFFDLSEASQA  225 (342)
Q Consensus       161 ~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~---------------~~~~~~~s~~~~~~i~~~d~~~~~~~  225 (342)
                      +++.|.++++|-+.+.+.....++  +...+.|++|-|.               ++.+.+++.|+++  ++||+...  .
T Consensus       252 s~s~dqtl~vW~~~t~~~k~~lR~--hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI--k~wdv~tg--~  325 (406)
T KOG0295|consen  252 SCSNDQTLRVWVVATKQCKAELRE--HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI--KIWDVSTG--M  325 (406)
T ss_pred             ecCCCceEEEEEeccchhhhhhhc--cccceEEEEecccccCcchhhccCCCCCccEEEeecccceE--EEEeccCC--e
Confidence            999999999999988644333232  2334667766432               1356667777765  56998654  4


Q ss_pred             ccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          226 KKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       226 ~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                      ..+.+.+|..         .|+.++|+|.|++|+|+.+|+++++||++++++...+..|...|++++|..+.-++++|+-
T Consensus       326 cL~tL~ghdn---------wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsV  396 (406)
T KOG0295|consen  326 CLFTLVGHDN---------WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSV  396 (406)
T ss_pred             EEEEEecccc---------eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccc
Confidence            4566777765         6999999999999999999999999999999999999999999999999999999999885


Q ss_pred             c
Q 019384          306 Y  306 (342)
Q Consensus       306 ~  306 (342)
                      +
T Consensus       397 d  397 (406)
T KOG0295|consen  397 D  397 (406)
T ss_pred             c
Confidence            4

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=6.9e-32  Score=229.89  Aligned_cols=276  Identities=20%  Similarity=0.332  Sum_probs=214.7

Q ss_pred             CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEe-CCCC---eEEEecCCcEEEEEecc
Q 019384           15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFH-DDSS---GFSASADHTVRRLVFSH   90 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~-~~~~---~~s~s~D~~i~~w~~~~   90 (342)
                      +-.|.++|.+|.-.  ++.++||++||++||||..+.......+|.++|.++.|. .+..   +++||.|+++++|-++.
T Consensus       101 ~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~  178 (423)
T KOG0313|consen  101 CFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV  178 (423)
T ss_pred             cccchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence            35678999999877  789999999999999999988777888999999999985 4443   78999999999999987


Q ss_pred             Cce-----eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCC--------C------------cceeee-eecC
Q 019384           91 GKE-----DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS--------G------------QERTLV-GTYP  144 (342)
Q Consensus        91 ~~~-----~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~--------~------------~~~~~~-~~~~  144 (342)
                      +..     ....||...|.+++..+++.+++|||+|.+|++|+..+..        .            ..+..+ ....
T Consensus       179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G  258 (423)
T KOG0313|consen  179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG  258 (423)
T ss_pred             chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence            762     1235999999999999999999999999999999932110        0            000111 1122


Q ss_pred             CCCcEEEEecc-CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhh
Q 019384          145 QPERVYSLSLV-GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAS  223 (342)
Q Consensus       145 ~~~~v~~~s~~-~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~  223 (342)
                      |...|.++.+. ...+++++.|.+|+.||+.++......   ..+...+|+..+|....+++++.|..+  ++||.+...
T Consensus       259 Ht~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~---~~~ksl~~i~~~~~~~Ll~~gssdr~i--rl~DPR~~~  333 (423)
T KOG0313|consen  259 HTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTL---TTNKSLNCISYSPLSKLLASGSSDRHI--RLWDPRTGD  333 (423)
T ss_pred             cccceeeEEEcCCCceEeecccceEEEEEeecccceeee---ecCcceeEeecccccceeeecCCCCce--eecCCCCCC
Confidence            44556666664 457899999999999999987543222   233457899999998999999998865  569987643


Q ss_pred             h-cccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCCce-eeeccCCCCcceEEEEECCCCCEE
Q 019384          224 Q-AKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNNKK-RLYQYSKYPTSIAALSFSRDGRLL  300 (342)
Q Consensus       224 ~-~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~~~-~~~~~~~~~~~V~~v~~spdg~~l  300 (342)
                      . .-...+.+|..         -|.+|.++|... +|++|+.|+++++||+++.+ .+..+.+|...|.++.|+ ++.+|
T Consensus       334 gs~v~~s~~gH~n---------wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~I  403 (423)
T KOG0313|consen  334 GSVVSQSLIGHKN---------WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLI  403 (423)
T ss_pred             CceeEEeeecchh---------hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceE
Confidence            2 22345556654         599999999876 57999999999999999876 788999999999999994 66788


Q ss_pred             EEEEecc
Q 019384          301 AVASSYT  307 (342)
Q Consensus       301 as~s~~~  307 (342)
                      ++|+.+.
T Consensus       404 vSGGaD~  410 (423)
T KOG0313|consen  404 VSGGADN  410 (423)
T ss_pred             EeccCcc
Confidence            8888765

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=5.1e-31  Score=263.27  Aligned_cols=280  Identities=18%  Similarity=0.232  Sum_probs=206.9

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc----e----eeeeeecCCceEEEEEeC--CCCeEEEecCCcEEEE
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN----V----LRGEFMHGGPVLDCCFHD--DSSGFSASADHTVRRL   86 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~----~----~~~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i~~w   86 (342)
                      .|.+.|.+++|+|++++||||+.|++|+|||....    .    ......+...|.+++|.+  ...+++++.|++|++|
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lW  560 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVW  560 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence            37889999999999999999999999999997531    1    122334567889999974  3456799999999999


Q ss_pred             EeccCc-eeecccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec---cCCeEEE
Q 019384           87 VFSHGK-EDILGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL---VGNRLVV  161 (342)
Q Consensus        87 ~~~~~~-~~~~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~---~~~~~~~  161 (342)
                      |+.++. ...+.+|...|++++|+| ++.+|+||+.|++|++||+++...  ...+.   ....+.++.+   ++..+++
T Consensus       561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~--~~~~~---~~~~v~~v~~~~~~g~~lat  635 (793)
T PLN00181        561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS--IGTIK---TKANICCVQFPSESGRSLAF  635 (793)
T ss_pred             ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE--EEEEe---cCCCeEEEEEeCCCCCEEEE
Confidence            998776 345788999999999997 678999999999999999975432  11222   2233445544   4678999


Q ss_pred             EEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh----cccceeeeEEecC
Q 019384          162 ATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ----AKKYAFKCHRKSE  237 (342)
Q Consensus       162 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~----~~~~~~~~h~~~~  237 (342)
                      ++.|+.|++||+++...+.... ..+...+.++.|. ++..+++++.|+.+  ++||......    .....+.+|.   
T Consensus       636 gs~dg~I~iwD~~~~~~~~~~~-~~h~~~V~~v~f~-~~~~lvs~s~D~~i--kiWd~~~~~~~~~~~~l~~~~gh~---  708 (793)
T PLN00181        636 GSADHKVYYYDLRNPKLPLCTM-IGHSKTVSYVRFV-DSSTLVSSSTDNTL--KLWDLSMSISGINETPLHSFMGHT---  708 (793)
T ss_pred             EeCCCeEEEEECCCCCccceEe-cCCCCCEEEEEEe-CCCEEEEEECCCEE--EEEeCCCCccccCCcceEEEcCCC---
Confidence            9999999999998754322211 1233456777776 67788999999976  4598753211    1122333443   


Q ss_pred             CCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeec-------------cCCCCcceEEEEECCCCCEEEEEE
Q 019384          238 AGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQ-------------YSKYPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       238 ~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~-------------~~~~~~~V~~v~~spdg~~las~s  304 (342)
                            ..+++++|+|++.+|++|+.|++|++|+......+..             ...+...|.+++|+|++.+|++|+
T Consensus       709 ------~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~  782 (793)
T PLN00181        709 ------NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN  782 (793)
T ss_pred             ------CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEec
Confidence                  2578899999999999999999999999765432211             123456799999999999999999


Q ss_pred             eccccCCCCCCCCCcEEEEEc
Q 019384          305 SYTFEEGDKPHEPDAIFVRSV  325 (342)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~  325 (342)
                      +++           .|.+|++
T Consensus       783 ~dG-----------~I~i~~~  792 (793)
T PLN00181        783 STG-----------NIKILEM  792 (793)
T ss_pred             CCC-----------cEEEEec
Confidence            876           4777764

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.1e-31  Score=242.17  Aligned_cols=273  Identities=18%  Similarity=0.230  Sum_probs=214.1

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeec-CCceEEEEEeCCCCeEEEec--CCcEEEEEeccCc-ee
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMH-GGPVLDCCFHDDSSGFSASA--DHTVRRLVFSHGK-ED   94 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h-~~~V~~~~~~~~~~~~s~s~--D~~i~~w~~~~~~-~~   94 (342)
                      +..|++.+|.+..+.||+|-..|...||++....+++...- ..+|..+.|..-+-+++-+.  =|-+-+|++.... ..
T Consensus       265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl  344 (893)
T KOG0291|consen  265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL  344 (893)
T ss_pred             ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee
Confidence            47899999999999999999999999999998877665543 47899999985555544333  3467789887765 34


Q ss_pred             ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCC
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLR  174 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~  174 (342)
                      ...+|...+.|++++|||++++||+.||+|||||..++.+  ...+..+....+.+.+...++.+++++-||+||.||+.
T Consensus       345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC--~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlk  422 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC--FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK  422 (893)
T ss_pred             eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE--EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeec
Confidence            5678999999999999999999999999999999876544  33444444445556666678899999999999999998


Q ss_pred             CCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC
Q 019384          175 NMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI  254 (342)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~  254 (342)
                      .+..- +.+..+-+.+..|++..|.|..++.|+.|. ..|++|+..+.+  ..-.+.+|.         +||.+++|+|+
T Consensus       423 RYrNf-RTft~P~p~QfscvavD~sGelV~AG~~d~-F~IfvWS~qTGq--llDiLsGHE---------gPVs~l~f~~~  489 (893)
T KOG0291|consen  423 RYRNF-RTFTSPEPIQFSCVAVDPSGELVCAGAQDS-FEIFVWSVQTGQ--LLDILSGHE---------GPVSGLSFSPD  489 (893)
T ss_pred             cccee-eeecCCCceeeeEEEEcCCCCEEEeeccce-EEEEEEEeecCe--eeehhcCCC---------CcceeeEEccc
Confidence            77442 333445567889999999998777777664 478899986543  223345554         48999999999


Q ss_pred             CCeEEEecCCCeEEEEeCCCce-eeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          255 YGTFATGGCDGFVNVWDGNNKK-RLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       255 ~~~l~sgs~Dg~I~iWd~~~~~-~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      +..|+|||+|.|||+||+-... .+.++ .+...+..++|+|||+.||++..++
T Consensus       490 ~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldg  542 (893)
T KOG0291|consen  490 GSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDG  542 (893)
T ss_pred             cCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecc
Confidence            9999999999999999975432 33333 4678899999999999999998753

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.2e-31  Score=224.31  Aligned_cols=290  Identities=18%  Similarity=0.237  Sum_probs=220.9

Q ss_pred             CCCCCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeCC-CCeEEEecCCc
Q 019384            5 HPPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHDD-SSGFSASADHT   82 (342)
Q Consensus         5 ~~~~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~~-~~~~s~s~D~~   82 (342)
                      |.|=+.-+ +.++|.++|.+|++.|-.+-++||+.|+|++|||+.++.+..+ -+|-..|..+++++. -.+++|+.|+.
T Consensus       138 HapwKl~r-Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~  216 (460)
T KOG0285|consen  138 HAPWKLYR-VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ  216 (460)
T ss_pred             cCcceehh-hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCe
Confidence            44433333 3478999999999999999999999999999999999987655 469999999999854 46789999999


Q ss_pred             EEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeE
Q 019384           83 VRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRL  159 (342)
Q Consensus        83 i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~  159 (342)
                      |+-||++..+ .+.+.+|-..|+|++.+|.-+.|+||+.|.+||+||+++...  ...+..+  ...|..+-.  ..-.+
T Consensus       217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~--V~~l~GH--~~~V~~V~~~~~dpqv  292 (460)
T KOG0285|consen  217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS--VHVLSGH--TNPVASVMCQPTDPQV  292 (460)
T ss_pred             eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce--EEEecCC--CCcceeEEeecCCCce
Confidence            9999999877 456789999999999999999999999999999999986433  2233333  334444433  24479


Q ss_pred             EEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCC
Q 019384          160 VVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAG  239 (342)
Q Consensus       160 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~  239 (342)
                      ++++-|++|++||++.++.....  .+.+..+.+++.+|....+++++.|+   ++.|++.......  .+.+|..    
T Consensus       293 it~S~D~tvrlWDl~agkt~~tl--t~hkksvral~lhP~e~~fASas~dn---ik~w~~p~g~f~~--nlsgh~~----  361 (460)
T KOG0285|consen  293 ITGSHDSTVRLWDLRAGKTMITL--THHKKSVRALCLHPKENLFASASPDN---IKQWKLPEGEFLQ--NLSGHNA----  361 (460)
T ss_pred             EEecCCceEEEeeeccCceeEee--ecccceeeEEecCCchhhhhccCCcc---ceeccCCccchhh--ccccccc----
Confidence            99999999999999987643322  23444578888999988899888774   4678885443222  2444443    


Q ss_pred             CceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC-----C---CCcceEEEEECCCCCEEEEEEeccccCC
Q 019384          240 RDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS-----K---YPTSIAALSFSRDGRLLAVASSYTFEEG  311 (342)
Q Consensus       240 ~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~-----~---~~~~V~~v~~spdg~~las~s~~~~~~~  311 (342)
                           -|++++...|+ .+++|++.|.+..||.+++..-+..+     |   ....|.+.+|...|..|++|..+-    
T Consensus       362 -----iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadK----  431 (460)
T KOG0285|consen  362 -----IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADK----  431 (460)
T ss_pred             -----eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCc----
Confidence                 48888887764 67899999999999999875443321     1   224689999999999999987665    


Q ss_pred             CCCCCCCcEEEEEccC
Q 019384          312 DKPHEPDAIFVRSVNE  327 (342)
Q Consensus       312 ~~~~~~~~~~~~~~~~  327 (342)
                             .|.+|+-.|
T Consensus       432 -------tIk~~keDe  440 (460)
T KOG0285|consen  432 -------TIKMYKEDE  440 (460)
T ss_pred             -------ceEEEeccc
Confidence                   466765443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.2e-32  Score=229.70  Aligned_cols=272  Identities=20%  Similarity=0.289  Sum_probs=206.9

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc-e
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK-E   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~-~   93 (342)
                      .+.+++|+|+.++.  ..++||..|+||+|||..+.. ++.+.+|.|.|.|+.|.. ..+++||.|.+|++||+.+++ .
T Consensus       194 Se~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~-rviisGSSDsTvrvWDv~tge~l  270 (499)
T KOG0281|consen  194 SENSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNTGEPL  270 (499)
T ss_pred             cccCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc-eEEEecCCCceEEEEeccCCchh
Confidence            45678999999864  588999999999999998754 455678999999999953 366799999999999999998 4


Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcc-eeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQE-RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD  172 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~-~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd  172 (342)
                      .++.+|...|..+.|+  .++++|+|.|.+|++||+.+..... +..+..  +-..+..+.++.+.|++++.|.+|++|+
T Consensus       271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvG--HrAaVNvVdfd~kyIVsASgDRTikvW~  346 (499)
T KOG0281|consen  271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVG--HRAAVNVVDFDDKYIVSASGDRTIKVWS  346 (499)
T ss_pred             hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhh--hhhheeeeccccceEEEecCCceEEEEe
Confidence            5788999999999997  4689999999999999987644211 111222  3344666788888999999999999999


Q ss_pred             CCCCCCcccccccccceeeEEEEEe-eCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEE
Q 019384          173 LRNMSQPEQRRESSLKYQTRCVRCY-PNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF  251 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  251 (342)
                      +.+.....  ...   ++...+++. =.++.+++|+.|++++  +||+..+..  ...+++|++.         |.|+.|
T Consensus       347 ~st~efvR--tl~---gHkRGIAClQYr~rlvVSGSSDntIR--lwdi~~G~c--LRvLeGHEeL---------vRciRF  408 (499)
T KOG0281|consen  347 TSTCEFVR--TLN---GHKRGIACLQYRDRLVVSGSSDNTIR--LWDIECGAC--LRVLEGHEEL---------VRCIRF  408 (499)
T ss_pred             ccceeeeh--hhh---cccccceehhccCeEEEecCCCceEE--EEeccccHH--HHHHhchHHh---------hhheee
Confidence            98864322  112   223334433 2456788889888764  599865433  3446788764         899999


Q ss_pred             cCCCCeEEEecCCCeEEEEeCCCce---------eeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEE
Q 019384          252 HPIYGTFATGGCDGFVNVWDGNNKK---------RLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFV  322 (342)
Q Consensus       252 sp~~~~l~sgs~Dg~I~iWd~~~~~---------~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~  322 (342)
                        |.+.+++|+.||+|+|||...+.         ++..+..|.++|..+.|  |...+++++-++           .|++
T Consensus       409 --d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd-----------tILi  473 (499)
T KOG0281|consen  409 --DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD-----------TILI  473 (499)
T ss_pred             --cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC-----------eEEE
Confidence              56889999999999999987532         45566789999999999  556666666555           6999


Q ss_pred             EEccC
Q 019384          323 RSVNE  327 (342)
Q Consensus       323 ~~~~~  327 (342)
                      |..-+
T Consensus       474 WdFl~  478 (499)
T KOG0281|consen  474 WDFLN  478 (499)
T ss_pred             EEcCC
Confidence            98764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-31  Score=216.80  Aligned_cols=248  Identities=19%  Similarity=0.228  Sum_probs=185.1

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCC-CCeEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDD-SSGFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~-~~~~s~s~D~~i~~w~~~~~~~   93 (342)
                      .+|+..|..+..++||++.+|+|+|+++|+||+.+++ .+.+.+|...|.+++|+++ .++++||-|.++++|+.-....
T Consensus        60 ~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck  139 (315)
T KOG0279|consen   60 TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK  139 (315)
T ss_pred             eccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE
Confidence            5799999999999999999999999999999998865 4566799999999999854 5667999999999999876654


Q ss_pred             eeccc--CCcceeEEEEeCC--CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEE
Q 019384           94 DILGK--HDAPVRCIEYSYA--AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVN  169 (342)
Q Consensus        94 ~~~~~--h~~~V~~~~~~~~--~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~  169 (342)
                      ..+..  |++-|.|+.|+|.  ...|+++|+|+++|+||+++...  ...+..+.+-...+.++++|...++|+.|+.+.
T Consensus       140 ~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~  217 (315)
T KOG0279|consen  140 YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAM  217 (315)
T ss_pred             EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccccccccEEEEEECCCCCEEecCCCCceEE
Confidence            44433  3788999999997  56899999999999999986432  222333334445567888888999999999999


Q ss_pred             EEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384          170 VYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI  249 (342)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  249 (342)
                      +||++..+.....   .....+.+++|+|+...++.+... .  |++||+........+.+..-.... ..... -..++
T Consensus       218 LwdL~~~k~lysl---~a~~~v~sl~fspnrywL~~at~~-s--IkIwdl~~~~~v~~l~~d~~g~s~-~~~~~-~clsl  289 (315)
T KOG0279|consen  218 LWDLNEGKNLYSL---EAFDIVNSLCFSPNRYWLCAATAT-S--IKIWDLESKAVVEELKLDGIGPSS-KAGDP-ICLSL  289 (315)
T ss_pred             EEEccCCceeEec---cCCCeEeeEEecCCceeEeeccCC-c--eEEEeccchhhhhhcccccccccc-ccCCc-EEEEE
Confidence            9999987653221   223457889999997766555443 3  467998654433322222111000 00111 24568


Q ss_pred             EEcCCCCeEEEecCCCeEEEEeCC
Q 019384          250 AFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       250 ~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      +|+++|..|..|-.|+.|++|.+.
T Consensus       290 aws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  290 AWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEcCCCcEEEeeecCCcEEEEEee
Confidence            999999999999999999999864

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.9e-31  Score=223.71  Aligned_cols=282  Identities=17%  Similarity=0.221  Sum_probs=209.5

Q ss_pred             CCccCC--CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee-cCCceEEEEEeCCCCe-EEEecCCcEEE
Q 019384           10 SGRELG--NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSG-FSASADHTVRR   85 (342)
Q Consensus        10 ~~~~~~--~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~-h~~~V~~~~~~~~~~~-~s~s~D~~i~~   85 (342)
                      +|+.++  .+|.+.|+++.||.||.+||||..+|.|+||+.+++.....+. .-+.+.-+.|+|...+ +.|+.||.+.+
T Consensus        95 ~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWm  174 (399)
T KOG0296|consen   95 TGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWM  174 (399)
T ss_pred             CCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEE
Confidence            455555  6899999999999999999999999999999999876555443 4556777888886665 57889999999


Q ss_pred             EEeccC-ceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc
Q 019384           86 LVFSHG-KEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA  164 (342)
Q Consensus        86 w~~~~~-~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~  164 (342)
                      |.+..+ ...++.+|+.++++-.|.|+|++++++..|++|++||+.++....... ..........++...+..++.|+.
T Consensus       175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~-~~e~~~~~~~~~~~~~~~~~~g~~  253 (399)
T KOG0296|consen  175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT-QAEGLELPCISLNLAGSTLTKGNS  253 (399)
T ss_pred             EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec-ccccCcCCccccccccceeEeccC
Confidence            999884 467889999999999999999999999999999999998764422111 111222334445555666777777


Q ss_pred             CCeEEEEeCCCCCCccccc------ccccceeeEEEEEee---CCceEEEEccCCeEEEEEeechhhhhcccceeeeEEe
Q 019384          165 GRHVNVYDLRNMSQPEQRR------ESSLKYQTRCVRCYP---NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK  235 (342)
Q Consensus       165 d~~v~iwd~~~~~~~~~~~------~~~~~~~~~~v~~~~---~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~  235 (342)
                      ++.+++-+..+++...-..      .........||.+.|   .=...++++.|+++.|  ||++....  +.. --|+ 
T Consensus       254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~i--yD~a~~~~--R~~-c~he-  327 (399)
T KOG0296|consen  254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAI--YDLAASTL--RHI-CEHE-  327 (399)
T ss_pred             CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEE--Eecccchh--hee-ccCC-
Confidence            7666666554443211100      011112344554443   3345689999998765  99854322  111 1122 


Q ss_pred             cCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          236 SEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       236 ~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                              .+|..+.|-+ ..+|+++..||.|+.||.+++.++.++.||+..|.+++++||+++++++|.+.
T Consensus       328 --------~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~  390 (399)
T KOG0296|consen  328 --------DGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN  390 (399)
T ss_pred             --------CceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence                    2588999988 78899999999999999999999999999999999999999999999999776

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.1e-30  Score=211.31  Aligned_cols=260  Identities=18%  Similarity=0.204  Sum_probs=204.8

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce---eeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCcee
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV---LRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKED   94 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~---~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~~   94 (342)
                      ...|+.|...||+..||+++.- .|||||+.++.   ..+.-+|.+.|.++.|..+++. +++|.||++++||++.....
T Consensus        40 dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q  118 (311)
T KOG0315|consen   40 DSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ  118 (311)
T ss_pred             ccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc
Confidence            4589999999999999987765 69999998754   3455689999999999877775 69999999999999987666


Q ss_pred             ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCC
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLR  174 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~  174 (342)
                      ....|..+|+++..+|+...|++|..+|.|++||+...... ...+...........+.+++..++.+..-|...+|++-
T Consensus       119 R~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~-~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~  197 (311)
T KOG0315|consen  119 RNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT-HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL  197 (311)
T ss_pred             hhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc-cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence            66778899999999999999999999999999999754321 12222222233445566778888888888999999997


Q ss_pred             CCCC-----cccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384          175 NMSQ-----PEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI  249 (342)
Q Consensus       175 ~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  249 (342)
                      +...     +..+. .....++..+.++|+++++++++.|.+++|  |+..+. ......+.+|+.         .+..+
T Consensus       198 ~~~~~s~l~P~~k~-~ah~~~il~C~lSPd~k~lat~ssdktv~i--wn~~~~-~kle~~l~gh~r---------WvWdc  264 (311)
T KOG0315|consen  198 NHQTASELEPVHKF-QAHNGHILRCLLSPDVKYLATCSSDKTVKI--WNTDDF-FKLELVLTGHQR---------WVWDC  264 (311)
T ss_pred             CCCccccceEhhhe-ecccceEEEEEECCCCcEEEeecCCceEEE--EecCCc-eeeEEEeecCCc---------eEEee
Confidence            6321     11111 233445677779999999999999998755  887544 333455666654         68999


Q ss_pred             EEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEE
Q 019384          250 AFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSF  293 (342)
Q Consensus       250 ~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~  293 (342)
                      +||.||++|++|+.|+++++||++.++.++++.+|-..-.|++.
T Consensus       265 ~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  265 AFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL  308 (311)
T ss_pred             eeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence            99999999999999999999999999999999999877667665

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.1e-30  Score=228.11  Aligned_cols=270  Identities=19%  Similarity=0.284  Sum_probs=208.7

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeC-CCCeEEEecCCcEEEEEeccCce-e
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHD-DSSGFSASADHTVRRLVFSHGKE-D   94 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~-~~~~~s~s~D~~i~~w~~~~~~~-~   94 (342)
                      +....|++|+|+.+|..||+|+.||.+|||+..++.+..+-.|+++|.++.|.. +..+++++.|+++.+||..++.. .
T Consensus       233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q  312 (524)
T KOG0273|consen  233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ  312 (524)
T ss_pred             CccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence            345799999999999999999999999999999888777788999999999984 45678999999999999988774 4


Q ss_pred             ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc--CCeEEEEEcCCeEEEEe
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV--GNRLVVATAGRHVNVYD  172 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~d~~v~iwd  172 (342)
                      .+.-|..+-..+.|- +...|++++.|+.|.++.+....+  ...+..  |+..|.++-++  +..+++++.|++++||.
T Consensus       313 ~f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P--~~t~~G--H~g~V~alk~n~tg~LLaS~SdD~TlkiWs  387 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRP--VKTFIG--HHGEVNALKWNPTGSLLASCSDDGTLKIWS  387 (524)
T ss_pred             eeeeccCCccceEEe-cCceEeecCCCceEEEEEecCCCc--ceeeec--ccCceEEEEECCCCceEEEecCCCeeEeee
Confidence            566677776677886 456799999999999998753322  122333  44556666665  67899999999999999


Q ss_pred             CCCCCCcccccccccceeeEEEEEeeCCc---------eEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384          173 LRNMSQPEQRRESSLKYQTRCVRCYPNGT---------GYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV  243 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~  243 (342)
                      +.........  ..+...+..+.|+|.|.         .+++++.|+++.  +||....  .....+..|+.        
T Consensus       388 ~~~~~~~~~l--~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~--lwdv~~g--v~i~~f~kH~~--------  453 (524)
T KOG0273|consen  388 MGQSNSVHDL--QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVK--LWDVESG--VPIHTLMKHQE--------  453 (524)
T ss_pred             cCCCcchhhh--hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEE--EEEccCC--ceeEeeccCCC--------
Confidence            7654332211  22333456667777653         367777888764  5998544  33344545543        


Q ss_pred             eeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          244 YPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       244 ~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                       ||.+|+|+|+|+++|+|+.||.|.+|+.++++..+.+.+- +.|..++|+.+|.+|.++-++.
T Consensus       454 -pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~  515 (524)
T KOG0273|consen  454 -PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDG  515 (524)
T ss_pred             -ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCC
Confidence             8999999999999999999999999999999988887654 5699999999999988776554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=2.3e-32  Score=234.96  Aligned_cols=283  Identities=19%  Similarity=0.255  Sum_probs=218.9

Q ss_pred             CCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce--ee-eeeecCCceEEEEEe-CCCCeEEEecCCcE
Q 019384            8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV--LR-GEFMHGGPVLDCCFH-DDSSGFSASADHTV   83 (342)
Q Consensus         8 ~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~--~~-~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i   83 (342)
                      |..+......|..+|..+.|-++...|++|+.|..|++|++..++  +. .+.+..++|+++.|. ++...++++.|+..
T Consensus       164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~  243 (459)
T KOG0288|consen  164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL  243 (459)
T ss_pred             chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence            556666677899999999999999999999999999999997665  33 344677899999997 55567899999999


Q ss_pred             EEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEE
Q 019384           84 RRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVA  162 (342)
Q Consensus        84 ~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~  162 (342)
                      ++|++...+. .++.+|++.|+++.|......+++|+.|.+||+||+....+. ...+    -...+..+...+..++++
T Consensus       244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~-kt~l----~~S~cnDI~~~~~~~~Sg  318 (459)
T KOG0288|consen  244 RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCS-KTVL----PGSQCNDIVCSISDVISG  318 (459)
T ss_pred             eeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhee-cccc----ccccccceEecceeeeec
Confidence            9999988774 478899999999999987767999999999999999753221 1111    112233444445678889


Q ss_pred             EcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCce
Q 019384          163 TAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDI  242 (342)
Q Consensus       163 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~  242 (342)
                      ..|++||+||++.....   ...+....++++..++++..+++++-|..+.  ++|++.......+.-.+       ...
T Consensus       319 H~DkkvRfwD~Rs~~~~---~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~--viDlRt~eI~~~~sA~g-------~k~  386 (459)
T KOG0288|consen  319 HFDKKVRFWDIRSADKT---RSVPLGGRVTSLDLSMDGLELLSSSRDDTLK--VIDLRTKEIRQTFSAEG-------FKC  386 (459)
T ss_pred             ccccceEEEeccCCcee---eEeecCcceeeEeeccCCeEEeeecCCCcee--eeecccccEEEEeeccc-------ccc
Confidence            99999999999986432   2334556789999999999999888887654  58886543322221111       111


Q ss_pred             eeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCc--ceEEEEECCCCCEEEEEEecc
Q 019384          243 VYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPT--SIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       243 ~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~--~V~~v~~spdg~~las~s~~~  307 (342)
                      ....+.+.|||++.++++||.||.|+||++.++++...++....  .|++++|+|-|++|++++.+.
T Consensus       387 asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~  453 (459)
T KOG0288|consen  387 ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK  453 (459)
T ss_pred             ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc
Confidence            12377899999999999999999999999999998877765544  499999999999999887643

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.6e-29  Score=220.70  Aligned_cols=273  Identities=25%  Similarity=0.340  Sum_probs=211.2

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCC-CeEEEecCCcEEEEEeccCc-
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDS-SGFSASADHTVRRLVFSHGK-   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~~-   92 (342)
                      .+|.+.|++++|+|++++|++++.||.+++||..++. ......|...+..+.|.+++ .+++++.|+.+++|++...+ 
T Consensus         6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~   85 (289)
T cd00200           6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC   85 (289)
T ss_pred             cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc
Confidence            3788999999999999999999999999999998764 34445788899999998766 56788899999999998754 


Q ss_pred             eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC--CeEEEEEcCCeEEE
Q 019384           93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG--NRLVVATAGRHVNV  170 (342)
Q Consensus        93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~--~~~~~~s~d~~v~i  170 (342)
                      ...+..|...|.++.|++++..+++++.|+.|++||+++...  ...+.  .+...+.++.+.+  ..+++++.++.|++
T Consensus        86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  161 (289)
T cd00200          86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC--LTTLR--GHTDWVNSVAFSPDGTFVASSSQDGTIKL  161 (289)
T ss_pred             eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE--EEEec--cCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence            445678888999999999988888888899999999874322  11222  2333455555544  45565666999999


Q ss_pred             EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384          171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA  250 (342)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  250 (342)
                      ||++..+..... . .....+.++.+.|++..+++++.++.+  .+||.........  +..|.         .++.+++
T Consensus       162 ~d~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~l~~~~~~~~i--~i~d~~~~~~~~~--~~~~~---------~~i~~~~  226 (289)
T cd00200         162 WDLRTGKCVATL-T-GHTGEVNSVAFSPDGEKLLSSSSDGTI--KLWDLSTGKCLGT--LRGHE---------NGVNSVA  226 (289)
T ss_pred             EEccccccceeE-e-cCccccceEEECCCcCEEEEecCCCcE--EEEECCCCceecc--hhhcC---------CceEEEE
Confidence            999865432221 1 223357789999999888888888765  5688854322222  22222         2689999


Q ss_pred             EcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          251 FHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       251 ~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      |+|++.++++++.||.|++||..+++.+..+..|...|.+++|+|++++|++++.+.
T Consensus       227 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  283 (289)
T cd00200         227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG  283 (289)
T ss_pred             EcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCC
Confidence            999988899998899999999998888888889999999999999999999988665

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.98  E-value=2.9e-29  Score=221.87  Aligned_cols=310  Identities=20%  Similarity=0.237  Sum_probs=229.1

Q ss_pred             CCCccCC--CCCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCCe-EEEecCCcE
Q 019384            9 TSGRELG--NPPSDGISNLRFSNHSD-HLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSSG-FSASADHTV   83 (342)
Q Consensus         9 ~~~~~~~--~~~~~~V~~l~fs~~~~-~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i   83 (342)
                      ++|-.++  .+|+..|+++.|-|... +++|||.|++|-+|+-.=-+.. +...|..-|.++.|+||+.+ ++++.|+++
T Consensus       135 DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki  214 (603)
T KOG0318|consen  135 DSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI  214 (603)
T ss_pred             cCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence            3455566  47899999999999764 6999999999999986544433 33469999999999988775 599999999


Q ss_pred             EEEEeccCce-eecc---cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeE
Q 019384           84 RRLVFSHGKE-DILG---KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRL  159 (342)
Q Consensus        84 ~~w~~~~~~~-~~~~---~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~  159 (342)
                      .+||=.+++. ..+.   +|++.|.+++|+||+++|+|+|.|+++||||..+........+.. ......+.+-+..+.|
T Consensus       215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~-~v~dqqvG~lWqkd~l  293 (603)
T KOG0318|consen  215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGS-TVEDQQVGCLWQKDHL  293 (603)
T ss_pred             EEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCC-chhceEEEEEEeCCeE
Confidence            9999777763 3454   799999999999999999999999999999997653321111111 1112234455557889


Q ss_pred             EEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccc---------cee
Q 019384          160 VVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK---------YAF  230 (342)
Q Consensus       160 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~---------~~~  230 (342)
                      ++.+.+|+|.+++....+.+..  ...+...++++..+|++..+++++.||.+.  -|+.......+.         ..+
T Consensus       294 ItVSl~G~in~ln~~d~~~~~~--i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~--~W~~~~g~~~~~~g~~h~nqI~~~  369 (603)
T KOG0318|consen  294 ITVSLSGTINYLNPSDPSVLKV--ISGHNKSITALTVSPDGKTIYSGSYDGHIN--SWDSGSGTSDRLAGKGHTNQIKGM  369 (603)
T ss_pred             EEEEcCcEEEEecccCCChhhe--ecccccceeEEEEcCCCCEEEeeccCceEE--EEecCCccccccccccccceEEEE
Confidence            9999999999999988763322  233445688999999999999999999765  476543221110         000


Q ss_pred             eeEE-----------------------------ec----------CC----------------------CCceeeeeeEE
Q 019384          231 KCHR-----------------------------KS----------EA----------------------GRDIVYPVNAI  249 (342)
Q Consensus       231 ~~h~-----------------------------~~----------~~----------------------~~~~~~~v~~v  249 (342)
                      ..+.                             +.          ..                      ..+..+...++
T Consensus       370 ~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~v  449 (603)
T KOG0318|consen  370 AASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAV  449 (603)
T ss_pred             eecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceE
Confidence            0000                             00          00                      01122456789


Q ss_pred             EEcCCCCeEEEecCCCeEEEEeCCCcee--eeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          250 AFHPIYGTFATGGCDGFVNVWDGNNKKR--LYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       250 ~~sp~~~~l~sgs~Dg~I~iWd~~~~~~--~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      +++|++..+|.|+.||.|+||.+.....  ...+..|.+.|++++||||++|||++...+           .+++|++++
T Consensus       450 Av~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~r-----------kvv~yd~~s  518 (603)
T KOG0318|consen  450 AVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASR-----------KVVLYDVAS  518 (603)
T ss_pred             EEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCC-----------cEEEEEccc
Confidence            9999999999999999999999886543  345678999999999999999999998777           588898887


Q ss_pred             CccccCC
Q 019384          328 IEVKPKP  334 (342)
Q Consensus       328 ~~~~~~~  334 (342)
                      ..++.+-
T Consensus       519 ~~~~~~~  525 (603)
T KOG0318|consen  519 REVKTNR  525 (603)
T ss_pred             Cceecce
Confidence            7765543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=9.5e-30  Score=233.23  Aligned_cols=252  Identities=18%  Similarity=0.252  Sum_probs=190.4

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCC-CeEEEecCCcEEEEEeccCc-e
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDS-SGFSASADHTVRRLVFSHGK-E   93 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~~-~   93 (342)
                      +|...++++++||||+++|||+.||.|||||...+-+. +.-.|...|+++.|+..+ .++++|.||+|+.||+...+ .
T Consensus       348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf  427 (893)
T KOG0291|consen  348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF  427 (893)
T ss_pred             ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee
Confidence            78999999999999999999999999999999887654 455799999999998554 56799999999999997765 3


Q ss_pred             eecccCC-cceeEEEEeCCCCEEEEeeCCC-cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEE
Q 019384           94 DILGKHD-APVRCIEYSYAAGQVITGSWDK-SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVY  171 (342)
Q Consensus        94 ~~~~~h~-~~V~~~~~~~~~~~l~sgs~D~-~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iw  171 (342)
                      +++.... -+..|++..|.|..+..|+.|. .|.+|+++++..  ...+..|+.+....++++.++.+++++.|++||+|
T Consensus       428 RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql--lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW  505 (893)
T KOG0291|consen  428 RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL--LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW  505 (893)
T ss_pred             eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee--eehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence            4444322 4567899999999999999997 599999986533  23444555554445577778899999999999999


Q ss_pred             eCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcc----cceeeeEEec-----CCCCce
Q 019384          172 DLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAK----KYAFKCHRKS-----EAGRDI  242 (342)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~----~~~~~~h~~~-----~~~~~~  242 (342)
                      |+-......+.  ..+...+..+++.|+|+.+++++.||.+.  +||..+..+..    +..+..-++.     ......
T Consensus       506 ~if~s~~~vEt--l~i~sdvl~vsfrPdG~elaVaTldgqIt--f~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~  581 (893)
T KOG0291|consen  506 DIFSSSGTVET--LEIRSDVLAVSFRPDGKELAVATLDGQIT--FFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK  581 (893)
T ss_pred             EeeccCceeee--EeeccceeEEEEcCCCCeEEEEEecceEE--EEEhhhceeeccccchhhccccccccceeehhhccc
Confidence            98654222221  12334567899999999999999999764  69987654431    1111111111     111222


Q ss_pred             eeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384          243 VYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       243 ~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~  274 (342)
                      ..++++++|++||..+++|+....|.|||+.+
T Consensus       582 ~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~  613 (893)
T KOG0291|consen  582 GKTFTTICYSADGKCILAGGESNSICIYDVPE  613 (893)
T ss_pred             CCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence            35789999999999999999999999999764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=9.1e-29  Score=202.49  Aligned_cols=269  Identities=17%  Similarity=0.198  Sum_probs=199.6

Q ss_pred             CCCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCCc---eeeeee--ecCCceEEEEEeCCCCe-EEEecCCcEEEEE
Q 019384           15 GNPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASAN---VLRGEF--MHGGPVLDCCFHDDSSG-FSASADHTVRRLV   87 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~---~~~~~~--~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~   87 (342)
                      ..+|.+.|+.++|+|- |..|||+|.|++||||+...+   .+++.+  +|+..|.+++|+|.++. ++||.|.++.+|.
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~   89 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWK   89 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEee
Confidence            3678889999999998 889999999999999999853   233332  69999999999987765 5899999999997


Q ss_pred             eccCc---eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCC-cceeeeeecCCCCcEEEEeccC--CeEEE
Q 019384           88 FSHGK---EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASG-QERTLVGTYPQPERVYSLSLVG--NRLVV  161 (342)
Q Consensus        88 ~~~~~---~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~-~~~~~~~~~~~~~~v~~~s~~~--~~~~~  161 (342)
                      -..+.   ..+++||...|.|++|+++|.+|||||-|+.+-||....+.. .....++.  |.+.|-.+.+.|  +.|++
T Consensus        90 k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~--HtqDVK~V~WHPt~dlL~S  167 (312)
T KOG0645|consen   90 KEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE--HTQDVKHVIWHPTEDLLFS  167 (312)
T ss_pred             cCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc--ccccccEEEEcCCcceeEE
Confidence            76555   346899999999999999999999999999999998763322 11222333  444454555555  78999


Q ss_pred             EEcCCeEEEEeCCCCCC-c-ccccccccceeeEEEEEeeCCceEEEEccCCeEEEEE--eechhhhhcccceeeeEEecC
Q 019384          162 ATAGRHVNVYDLRNMSQ-P-EQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEF--FDLSEASQAKKYAFKCHRKSE  237 (342)
Q Consensus       162 ~s~d~~v~iwd~~~~~~-~-~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~--~d~~~~~~~~~~~~~~h~~~~  237 (342)
                      +++|++|++|+-..... . .+.. ......+-+++|.+.|..+++++.|+++.|+.  .++..                
T Consensus       168 ~SYDnTIk~~~~~~dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~----------------  230 (312)
T KOG0645|consen  168 CSYDNTIKVYRDEDDDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSG----------------  230 (312)
T ss_pred             eccCCeEEEEeecCCCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCcceEeeeeccCcch----------------
Confidence            99999999998663211 0 1111 12223567899999999999999999987744  22210                


Q ss_pred             CCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCc------eee-eccCCCCcceEEEEECCC-CCEEEEEEecc
Q 019384          238 AGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNK------KRL-YQYSKYPTSIAALSFSRD-GRLLAVASSYT  307 (342)
Q Consensus       238 ~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~------~~~-~~~~~~~~~V~~v~~spd-g~~las~s~~~  307 (342)
                         .+..++..+++.  ...|||++.|+.|+|+.....      +.+ ..-..|...|++++|+|. ..+|++|+.++
T Consensus       231 ---~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG  303 (312)
T KOG0645|consen  231 ---MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDG  303 (312)
T ss_pred             ---hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCc
Confidence               111257788887  568999999999999975532      112 133468889999999996 55788777665

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8.4e-30  Score=237.02  Aligned_cols=276  Identities=16%  Similarity=0.187  Sum_probs=215.6

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCce-
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKE-   93 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~-   93 (342)
                      ..+..|-.|+|.|...-++++-..|+|++||..-+.++. +..|.|+|.+++|++..-+ ++|+.|-.|++|...+.+. 
T Consensus         7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl   86 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL   86 (1202)
T ss_pred             cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh
Confidence            446788899999999999999999999999998776554 4579999999999976654 6999999999999998885 


Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC--CeEEEEEcCCeEEEE
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG--NRLVVATAGRHVNVY  171 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~--~~~~~~s~d~~v~iw  171 (342)
                      ..+.+|-+.|+.+.|++.-..|+|+|.|.|||||+..+...  ...+..|  ...|.+-.+.+  +.++++|-|.+||+|
T Consensus        87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~--iavltGH--nHYVMcAqFhptEDlIVSaSLDQTVRVW  162 (1202)
T KOG0292|consen   87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC--IAVLTGH--NHYVMCAQFHPTEDLIVSASLDQTVRVW  162 (1202)
T ss_pred             hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce--EEEEecC--ceEEEeeccCCccceEEEecccceEEEE
Confidence            46889999999999999999999999999999999876543  2344443  34566666654  689999999999999


Q ss_pred             eCCCCCCc----c----c---------cc---c-------cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh
Q 019384          172 DLRNMSQP----E----Q---------RR---E-------SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ  224 (342)
Q Consensus       172 d~~~~~~~----~----~---------~~---~-------~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~  224 (342)
                      |+...+..    .    +         ..   .       ..+..-++-++|+|.-..+++|+.|..+++|-|+-  .+.
T Consensus       163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne--tKa  240 (1202)
T KOG0292|consen  163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE--TKA  240 (1202)
T ss_pred             eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc--ccc
Confidence            98643210    0    0         00   0       00111244568899988999999999887644443  211


Q ss_pred             cccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEE
Q 019384          225 AKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       225 ~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s  304 (342)
                      -..-..++|         .++|+++-|||....++|.|+|++|||||.+..+.++++..-..+-|.++-.|...++|+|=
T Consensus       241 WEvDtcrgH---------~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH  311 (1202)
T KOG0292|consen  241 WEVDTCRGH---------YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH  311 (1202)
T ss_pred             eeehhhhcc---------cCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec
Confidence            111122333         34799999999999999999999999999999888999887778999999999999999886


Q ss_pred             ecc
Q 019384          305 SYT  307 (342)
Q Consensus       305 ~~~  307 (342)
                      ..+
T Consensus       312 DsG  314 (1202)
T KOG0292|consen  312 DSG  314 (1202)
T ss_pred             CCc
Confidence            544

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.97  E-value=6e-30  Score=236.05  Aligned_cols=229  Identities=27%  Similarity=0.328  Sum_probs=172.6

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc-
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK-   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~-   92 (342)
                      -+|++.|+.++|+|+.++|+|+|.|+++|||.+.+.. +....+|..+|+++.|+|-+.. +|||.|++.++|...... 
T Consensus       448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P  527 (707)
T KOG0263|consen  448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP  527 (707)
T ss_pred             ecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc
Confidence            4899999999999999999999999999999998754 4455689999999999988764 699999999999987755 


Q ss_pred             eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384           93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD  172 (342)
Q Consensus        93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd  172 (342)
                      .+.+.+|-.-|.|+.|+|+..+++|||.|+++|+||..++..  ...+..|..+...+.++++|.++++|+.|+.|++||
T Consensus       528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~--VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD  605 (707)
T KOG0263|consen  528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS--VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWD  605 (707)
T ss_pred             hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE--EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence            678899999999999999999999999999999999876433  223333444444555555666677777777777777


Q ss_pred             CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384          173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH  252 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  252 (342)
                      +.+++..                                                ..+.+|.         +.|.++.||
T Consensus       606 l~~~~~v------------------------------------------------~~l~~Ht---------~ti~SlsFS  628 (707)
T KOG0263|consen  606 LANGSLV------------------------------------------------KQLKGHT---------GTIYSLSFS  628 (707)
T ss_pred             cCCCcch------------------------------------------------hhhhccc---------CceeEEEEe
Confidence            6654211                                                1123342         248889999


Q ss_pred             CCCCeEEEecCCCeEEEEeCCCce------------------------eeeccCCCCcceEEEEECCCCCEEEEE
Q 019384          253 PIYGTFATGGCDGFVNVWDGNNKK------------------------RLYQYSKYPTSIAALSFSRDGRLLAVA  303 (342)
Q Consensus       253 p~~~~l~sgs~Dg~I~iWd~~~~~------------------------~~~~~~~~~~~V~~v~~spdg~~las~  303 (342)
                      .+|..||+|+.|.+|++||+....                        ++..+..-..+|.++.|.--.-.|+.|
T Consensus       629 ~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  629 RDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             cCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence            999999999999999999875321                        223333334567777776655555444

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=8.5e-31  Score=212.13  Aligned_cols=242  Identities=15%  Similarity=0.271  Sum_probs=192.3

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCC-CCeEEEecCCcEEEEEeccCce-
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD-SSGFSASADHTVRRLVFSHGKE-   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~-~~~~s~s~D~~i~~w~~~~~~~-   93 (342)
                      ++|.+.|++.+.+.+..+-||++.|-+.+|||.-++..+..+.|+..|.+|+|+.+ ..+++++.+..+|++|++..+. 
T Consensus        56 eghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap  135 (334)
T KOG0278|consen   56 EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP  135 (334)
T ss_pred             eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC
Confidence            68999999999999999999999999999999998888888899999999999854 5678999999999999988763 


Q ss_pred             -eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384           94 -DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD  172 (342)
Q Consensus        94 -~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd  172 (342)
                       .-+.+|.+.|+.+.|....+.|+|++.|++||+||.++++..  ..+ ..+++.....++.+++ +++.+.++.|++||
T Consensus       136 p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v--~sL-~~~s~VtSlEvs~dG~-ilTia~gssV~Fwd  211 (334)
T KOG0278|consen  136 PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEV--QSL-EFNSPVTSLEVSQDGR-ILTIAYGSSVKFWD  211 (334)
T ss_pred             chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEE--EEE-ecCCCCcceeeccCCC-EEEEecCceeEEec
Confidence             357899999999999998899999999999999999876432  112 2344555556666665 56677778999999


Q ss_pred             CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384          173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH  252 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  252 (342)
                      ..+......   -.++..+++.+.+|+...++++..|..+  +.||..+......     +     ..++.+||.||.|+
T Consensus       212 aksf~~lKs---~k~P~nV~SASL~P~k~~fVaGged~~~--~kfDy~TgeEi~~-----~-----nkgh~gpVhcVrFS  276 (334)
T KOG0278|consen  212 AKSFGLLKS---YKMPCNVESASLHPKKEFFVAGGEDFKV--YKFDYNTGEEIGS-----Y-----NKGHFGPVHCVRFS  276 (334)
T ss_pred             cccccceee---ccCccccccccccCCCceEEecCcceEE--EEEeccCCceeee-----c-----ccCCCCceEEEEEC
Confidence            988643322   2345667888899999888888887765  4577654322211     1     22445699999999


Q ss_pred             CCCCeEEEecCCCeEEEEeCCCce
Q 019384          253 PIYGTFATGGCDGFVNVWDGNNKK  276 (342)
Q Consensus       253 p~~~~l~sgs~Dg~I~iWd~~~~~  276 (342)
                      |+|..+++||+||+||||....++
T Consensus       277 PdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  277 PDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             CCCceeeccCCCceEEEEEecCCC
Confidence            999999999999999999876544

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=5.8e-29  Score=203.28  Aligned_cols=277  Identities=16%  Similarity=0.221  Sum_probs=208.3

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~   93 (342)
                      .+|+..++.|.|+.+|++|.|++.|.++.||-..+++.+. ..+|.+.|++|... ....++++++|.++++||++++++
T Consensus         7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~   86 (327)
T KOG0643|consen    7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ   86 (327)
T ss_pred             ccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence            5799999999999999999999999999999986666554 46899999999997 556678999999999999999998


Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCC-----CcEEEEcCCCCC----C-cceeeeeecCCCCcEEEEeccCCeEEEEE
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWD-----KSLKCWDPRGAS----G-QERTLVGTYPQPERVYSLSLVGNRLVVAT  163 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D-----~~I~iWd~~~~~----~-~~~~~~~~~~~~~~v~~~s~~~~~~~~~s  163 (342)
                      ...-....+|+.+.|+++|++++.+..+     +.|.++|++...    . .+...+..........-+.+.++.|++|.
T Consensus        87 la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh  166 (327)
T KOG0643|consen   87 LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH  166 (327)
T ss_pred             EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec
Confidence            7777778899999999999887766554     578999987432    1 11122223333334445666788999999


Q ss_pred             cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384          164 AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV  243 (342)
Q Consensus       164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~  243 (342)
                      .+|.|.+||++++........ .+...++.+.++++...+++++.|.+-  ++||..+-...+.|.-            .
T Consensus       167 e~G~is~~da~~g~~~v~s~~-~h~~~Ind~q~s~d~T~FiT~s~Dtta--kl~D~~tl~v~Kty~t------------e  231 (327)
T KOG0643|consen  167 EDGSISIYDARTGKELVDSDE-EHSSKINDLQFSRDRTYFITGSKDTTA--KLVDVRTLEVLKTYTT------------E  231 (327)
T ss_pred             CCCcEEEEEcccCceeeechh-hhccccccccccCCcceEEecccCccc--eeeeccceeeEEEeee------------c
Confidence            999999999998754333222 223367888999999999999999876  4588865443333321            1


Q ss_pred             eeeeEEEEcCCCCeEEEec-CCC-eEEEEeCCCc------------eeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          244 YPVNAIAFHPIYGTFATGG-CDG-FVNVWDGNNK------------KRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       244 ~~v~~v~~sp~~~~l~sgs-~Dg-~I~iWd~~~~------------~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      .||++.+++|....++.|+ .+- .|.-=+.+.+            +.+..+++|-++|+++||+|||+..++|+.++
T Consensus       232 ~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG  309 (327)
T KOG0643|consen  232 RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG  309 (327)
T ss_pred             ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc
Confidence            2899999999888776654 321 1222222222            33456789999999999999999999987655

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=4.2e-29  Score=228.59  Aligned_cols=276  Identities=17%  Similarity=0.184  Sum_probs=217.2

Q ss_pred             CCCCCeEEEEEc-CCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEE-eCCCCeEEEecCCcEEEEEeccCce-
Q 019384           17 PPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCF-HDDSSGFSASADHTVRRLVFSHGKE-   93 (342)
Q Consensus        17 ~~~~~V~~l~fs-~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~-~~~~~~~s~s~D~~i~~w~~~~~~~-   93 (342)
                      +..+.|..++|- |+.++||.++..+.+|+|++.+..+.-..+|...|.++.. ..+..++|||.|+++++|.++.... 
T Consensus       321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~  400 (775)
T KOG0319|consen  321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK  400 (775)
T ss_pred             CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch
Confidence            446889999987 4678999999999999999988777666789999999994 4454678999999999998844432 


Q ss_pred             ----eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCC-cceeee----eecCCCCcE--EEEeccCCeEEE
Q 019384           94 ----DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASG-QERTLV----GTYPQPERV--YSLSLVGNRLVV  161 (342)
Q Consensus        94 ----~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~-~~~~~~----~~~~~~~~v--~~~s~~~~~~~~  161 (342)
                          ....+|+..|.+++++..+ ..|+|+|.|.+|++|++..... .....+    ....|...+  ++++++...+++
T Consensus       401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT  480 (775)
T KOG0319|consen  401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT  480 (775)
T ss_pred             hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence                2357899999999998755 6789999999999999864111 111111    111233334  455566678999


Q ss_pred             EEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCc
Q 019384          162 ATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRD  241 (342)
Q Consensus       162 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~  241 (342)
                      |+.|++.+||++....  .......++-.+.||+|++.++.++++|.|.+++|  |.+.+.+..+  .+.+|..      
T Consensus       481 ~SqDktaKiW~le~~~--l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKI--W~is~fSClk--T~eGH~~------  548 (775)
T KOG0319|consen  481 GSQDKTAKIWDLEQLR--LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKI--WSISTFSCLK--TFEGHTS------  548 (775)
T ss_pred             cccccceeeecccCce--EEEEeeCCccceEEEEeccccceeEeccCCceEEE--EEeccceeee--eecCccc------
Confidence            9999999999998532  22222334445789999999999999999998754  8886554333  3556654      


Q ss_pred             eeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          242 IVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       242 ~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                         +|..+.|-.++..|+||+.||-|+||+++++.|+.++-.|..+||+++.+|+..++++|+++.
T Consensus       549 ---aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg  611 (775)
T KOG0319|consen  549 ---AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDG  611 (775)
T ss_pred             ---eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCe
Confidence               688899999999999999999999999999999999999999999999999999999998876

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.7e-29  Score=234.74  Aligned_cols=246  Identities=17%  Similarity=0.241  Sum_probs=184.8

Q ss_pred             cCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC--------------------------------ce--------
Q 019384           13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA--------------------------------NV--------   52 (342)
Q Consensus        13 ~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~--------------------------------~~--------   52 (342)
                      |+-+.|.++|+++.||+||++|||||.|+.||||.+..                                ..        
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            44468999999999999999999999999999999754                                00        


Q ss_pred             ---------------------eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeC-
Q 019384           53 ---------------------LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSY-  110 (342)
Q Consensus        53 ---------------------~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~-  110 (342)
                                           +....+|.+.|+++.|+.++.++++|.|.++|+|++........-.|.+.|+|++|+| 
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPv  420 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPV  420 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence                                 0111258999999999999999999999999999999888877788999999999999 


Q ss_pred             CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCccccc-------
Q 019384          111 AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRR-------  183 (342)
Q Consensus       111 ~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~-------  183 (342)
                      |+++|+|||.|+.||||++....-   ........-.+.+++.++|+..++|+.+|.+++|+.+..+......       
T Consensus       421 DDryFiSGSLD~KvRiWsI~d~~V---v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K  497 (712)
T KOG0283|consen  421 DDRYFISGSLDGKVRLWSISDKKV---VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK  497 (712)
T ss_pred             CCCcEeecccccceEEeecCcCee---EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence            668999999999999999853111   1111122334556677788899999999999999988753221100       


Q ss_pred             ccccceeeEEEEEeeCCc-eEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEec
Q 019384          184 ESSLKYQTRCVRCYPNGT-GYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGG  262 (342)
Q Consensus       184 ~~~~~~~~~~v~~~~~~~-~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs  262 (342)
                      .... ..++.+.+.|... .+++.+.|.+|+  +||+++.....++  ++.....       .=....|+.||++|++++
T Consensus       498 k~~~-~rITG~Q~~p~~~~~vLVTSnDSrIR--I~d~~~~~lv~Kf--KG~~n~~-------SQ~~Asfs~Dgk~IVs~s  565 (712)
T KOG0283|consen  498 KKQG-KRITGLQFFPGDPDEVLVTSNDSRIR--IYDGRDKDLVHKF--KGFRNTS-------SQISASFSSDGKHIVSAS  565 (712)
T ss_pred             cccC-ceeeeeEecCCCCCeEEEecCCCceE--EEeccchhhhhhh--cccccCC-------cceeeeEccCCCEEEEee
Confidence            1111 2588888887654 478888888765  5998654444332  3322211       123468999999999999


Q ss_pred             CCCeEEEEeCC
Q 019384          263 CDGFVNVWDGN  273 (342)
Q Consensus       263 ~Dg~I~iWd~~  273 (342)
                      +|..|+||+..
T Consensus       566 eDs~VYiW~~~  576 (712)
T KOG0283|consen  566 EDSWVYIWKND  576 (712)
T ss_pred             cCceEEEEeCC
Confidence            99999999964

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=1.7e-30  Score=223.20  Aligned_cols=248  Identities=21%  Similarity=0.313  Sum_probs=192.1

Q ss_pred             CCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecC-CceEEEEEeC-CCCeEEEecCCcEEE
Q 019384            8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHG-GPVLDCCFHD-DSSGFSASADHTVRR   85 (342)
Q Consensus         8 ~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~-~~V~~~~~~~-~~~~~s~s~D~~i~~   85 (342)
                      ..+.+-..-.|...|.++.|++++..++||+.||.||+|+..-.......+|. ..|.+++|+| |..+++||.|++|++
T Consensus       127 ~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~iki  206 (464)
T KOG0284|consen  127 SFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKI  206 (464)
T ss_pred             eeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEE
Confidence            34455555789999999999999999999999999999999766555555554 8999999985 556789999999999


Q ss_pred             EEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEE
Q 019384           86 LVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVA  162 (342)
Q Consensus        86 w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~  162 (342)
                      ||....+ +..+.+|.--|+|++|+|...+|++||.|..|++||.+++.+.  ..+.  .+..+|..+.+  +++.++++
T Consensus       207 Wdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl--~tlh--~HKntVl~~~f~~n~N~Llt~  282 (464)
T KOG0284|consen  207 WDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL--ATLH--GHKNTVLAVKFNPNGNWLLTG  282 (464)
T ss_pred             EeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh--hhhh--hccceEEEEEEcCCCCeeEEc
Confidence            9987766 5788999999999999999999999999999999999976542  2233  34455665555  56799999


Q ss_pred             EcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCc-eEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCc
Q 019384          163 TAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGT-GYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRD  241 (342)
Q Consensus       163 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~  241 (342)
                      +.|..++++|+|+.+....  ...++..+.++.++|-.. .+.+++.|+.+..+.++.......   .-.+|        
T Consensus       283 skD~~~kv~DiR~mkEl~~--~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~---i~~AH--------  349 (464)
T KOG0284|consen  283 SKDQSCKVFDIRTMKELFT--YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE---IPPAH--------  349 (464)
T ss_pred             cCCceEEEEehhHhHHHHH--hhcchhhheeeccccccccceeeccCCCceEEEeccccccccC---CCccc--------
Confidence            9999999999996533222  223444578899998754 466778899876655553221111   11233        


Q ss_pred             eeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          242 IVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       242 ~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                       ...|.+++|||-|..|++|+.|.++++|...
T Consensus       350 -d~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  350 -DGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             -ccceeeeeccccceeEeecCCCcceeeeccC
Confidence             3369999999999999999999999999754

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.8e-28  Score=218.66  Aligned_cols=272  Identities=18%  Similarity=0.253  Sum_probs=216.4

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc-ee
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK-ED   94 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~-~~   94 (342)
                      +++.|-+|.|.|...-++++-+.|.|.|||..++.+... -...-+|.++.|.....+ ++|+.|..|++++..+.+ ..
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~   91 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK   91 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeE
Confidence            789999999999999999999999999999988765443 346678999999876665 588899999999999987 56


Q ss_pred             ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC---CeEEEEEcCCeEEEE
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG---NRLVVATAGRHVNVY  171 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~---~~~~~~s~d~~v~iw  171 (342)
                      .+..|.+.|+|++.+|...+++|+|.|.+||+||-+..-... +.+.  .|...|.+++++|   +.+++++-|++|++|
T Consensus        92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~-qtfe--GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW  168 (794)
T KOG0276|consen   92 TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACE-QTFE--GHEHYVMQVAFNPKDPNTFASASLDRTVKVW  168 (794)
T ss_pred             EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeee-eEEc--CcceEEEEEEecCCCccceeeeeccccEEEE
Confidence            789999999999999999999999999999999987543322 2222  3556677777764   589999999999999


Q ss_pred             eCCCCCCcccccccccceeeEEEEEeeCC--ceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384          172 DLRNMSQPEQRRESSLKYQTRCVRCYPNG--TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI  249 (342)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  249 (342)
                      .+.......+ .. .+..-++||.+.+.|  .++++++.|..+  ++||..+.+..  ..+.+|..         .|+.+
T Consensus       169 slgs~~~nfT-l~-gHekGVN~Vdyy~~gdkpylIsgaDD~ti--KvWDyQtk~CV--~TLeGHt~---------Nvs~v  233 (794)
T KOG0276|consen  169 SLGSPHPNFT-LE-GHEKGVNCVDYYTGGDKPYLISGADDLTI--KVWDYQTKSCV--QTLEGHTN---------NVSFV  233 (794)
T ss_pred             EcCCCCCcee-ee-ccccCcceEEeccCCCcceEEecCCCceE--EEeecchHHHH--HHhhcccc---------cceEE
Confidence            9976532222 22 233347899888755  567777777765  56998654333  34556543         69999


Q ss_pred             EEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          250 AFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       250 ~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      .|||.=..++|||+||++|||...+-+...++.--..+|||++-.+++..+++|...+
T Consensus       234 ~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg  291 (794)
T KOG0276|consen  234 FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEG  291 (794)
T ss_pred             EecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCC
Confidence            9999999999999999999999888777777766678999999999999999887643

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.7e-28  Score=224.64  Aligned_cols=273  Identities=19%  Similarity=0.220  Sum_probs=213.3

Q ss_pred             eEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEe-C-CCCeEEEecCCcEEEEEeccCceeeccc
Q 019384           22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFH-D-DSSGFSASADHTVRRLVFSHGKEDILGK   98 (342)
Q Consensus        22 V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~-~-~~~~~s~s~D~~i~~w~~~~~~~~~~~~   98 (342)
                      +..+..-+....++....|.++.++|..+..+. ...+..+.|.+++|- | +..++.|+....+|+++..+.....+.+
T Consensus       284 ~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~G  363 (775)
T KOG0319|consen  284 IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPG  363 (775)
T ss_pred             hhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeC
Confidence            566555666667777888999999999876654 445788999999996 4 4567799999999999999888889999


Q ss_pred             CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEE--Eecc-CCeEEEEEcCCeEEEEeCCC
Q 019384           99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYS--LSLV-GNRLVVATAGRHVNVYDLRN  175 (342)
Q Consensus        99 h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~--~s~~-~~~~~~~s~d~~v~iwd~~~  175 (342)
                      |+..|.+++...+|.+|+|||.|+++++|.++..............+...+.+  ++.. ...+++++.|.++++|++..
T Consensus       364 H~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~  443 (775)
T KOG0319|consen  364 HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK  443 (775)
T ss_pred             chhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCC
Confidence            99999999955567799999999999999774322211111111223334444  4332 35899999999999999986


Q ss_pred             CCC---ccc----ccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384          176 MSQ---PEQ----RRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA  248 (342)
Q Consensus       176 ~~~---~~~----~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  248 (342)
                      .+.   +..    .....+.-.++||++.|++..++++|.|.+.+  +|++.  .....-.+.+|..         .|.+
T Consensus       444 s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaK--iW~le--~~~l~~vLsGH~R---------Gvw~  510 (775)
T KOG0319|consen  444 SKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAK--IWDLE--QLRLLGVLSGHTR---------GVWC  510 (775)
T ss_pred             cccccccceehhhHHHHhhcccccceEecCCCceEEeccccccee--eeccc--CceEEEEeeCCcc---------ceEE
Confidence            211   111    11223445689999999999999999999875  58875  2334456777776         4999


Q ss_pred             EEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          249 IAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       249 v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      |.|+|..+.++|+|.|+||+||.+++..+++++.||...|..++|-.+|+.|+++++++
T Consensus       511 V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG  569 (775)
T KOG0319|consen  511 VSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG  569 (775)
T ss_pred             EEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC
Confidence            99999999999999999999999999999999999999999999999999999999876

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.7e-28  Score=223.63  Aligned_cols=274  Identities=19%  Similarity=0.242  Sum_probs=216.0

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCc-e
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK-E   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~-~   93 (342)
                      -+|...|.+++||.+...++||+ .+.++||+..+.+++.++... -+.++.|.|++. +++|...|.+.++|+.... .
T Consensus       370 ~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~  447 (888)
T KOG0306|consen  370 GGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLV  447 (888)
T ss_pred             ccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhh
Confidence            58899999999999987777765 458999999988777766544 788999987665 5688899999999998876 4


Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCC-----CCCcceeee---eecCCCCcEEE--EeccCCeEEEEE
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG-----ASGQERTLV---GTYPQPERVYS--LSLVGNRLVVAT  163 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~-----~~~~~~~~~---~~~~~~~~v~~--~s~~~~~~~~~s  163 (342)
                      ..+..|.+.|++++.+||+..++|||.|++|++||..-     ++......+   ...+.+..+.+  +++++..++++-
T Consensus       448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL  527 (888)
T KOG0306|consen  448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL  527 (888)
T ss_pred             hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence            56779999999999999999999999999999999641     111000011   11123344554  455577899999


Q ss_pred             cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384          164 AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV  243 (342)
Q Consensus       164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~  243 (342)
                      -|.+|++|=+.+.+.-....  .++.++.|+..+||++.+++++.|.++.+|=.|..+    ....+-+|+.        
T Consensus       528 LdnTVkVyflDtlKFflsLY--GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD----CHKS~fAHdD--------  593 (888)
T KOG0306|consen  528 LDNTVKVYFLDTLKFFLSLY--GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD----CHKSFFAHDD--------  593 (888)
T ss_pred             ccCeEEEEEecceeeeeeec--ccccceeEEeccCCcCeEEeccCCCceEEeccccch----hhhhhhcccC--------
Confidence            99999999888764332222  344568899999999999999999988764444422    2223445554        


Q ss_pred             eeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          244 YPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       244 ~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                       .|++|.|-|...++.+||.|+.|+-||.++.+.++.+.+|...|+|++.+|+|.+++++|.+
T Consensus       594 -Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD  655 (888)
T KOG0306|consen  594 -SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHD  655 (888)
T ss_pred             -ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCC
Confidence             58999999999999999999999999999999999999999999999999999999999874

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=2.8e-28  Score=228.16  Aligned_cols=246  Identities=23%  Similarity=0.288  Sum_probs=189.4

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEEC-CCce-eeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCc
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDA-SANV-LRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~-~~~~-~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~   92 (342)
                      .+|...|+.++|+|++.++++++.|++|||||+ ..+. ++.+.+|...|++++|++.+. +++|+.|++|++|++.+++
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~  279 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE  279 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence            679999999999999999999999999999999 4434 455669999999999997764 5699999999999999976


Q ss_pred             -eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCC--CCcEEEEeccCCeEEEEEcCCeEE
Q 019384           93 -EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ--PERVYSLSLVGNRLVVATAGRHVN  169 (342)
Q Consensus        93 -~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~v~~~s~~~~~~~~~s~d~~v~  169 (342)
                       .+.+.+|.+.|.+++|++++..|++++.|+.|++||+.++.......+.....  ....+.++.++..+++++.|++++
T Consensus       280 ~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~  359 (456)
T KOG0266|consen  280 CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK  359 (456)
T ss_pred             EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence             56889999999999999999999999999999999998654210112222222  234556677788999999999999


Q ss_pred             EEeCCCCCCcccccccccc-eeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384          170 VYDLRNMSQPEQRRESSLK-YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA  248 (342)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  248 (342)
                      +||++..........+... .-+.....++.+..+++++.|+.+  ++||.......  ..+.+|.        ..++..
T Consensus       360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v--~~~~~~s~~~~--~~l~~h~--------~~~~~~  427 (456)
T KOG0266|consen  360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSV--YVWDSSSGGIL--QRLEGHS--------KAAVSD  427 (456)
T ss_pred             EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceE--EEEeCCccchh--hhhcCCC--------CCceec
Confidence            9999987554433332222 112223346788999999999876  45998653222  2344442        125788


Q ss_pred             EEEcCCCCeEEEec--CCCeEEEEeCC
Q 019384          249 IAFHPIYGTFATGG--CDGFVNVWDGN  273 (342)
Q Consensus       249 v~~sp~~~~l~sgs--~Dg~I~iWd~~  273 (342)
                      ++++|..+++++++  .|+.|++|..+
T Consensus       428 ~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  428 LSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             cccCCCcCeeeecCcCCCceEEEecCC
Confidence            99999999999998  68899999754

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.5e-27  Score=195.40  Aligned_cols=242  Identities=17%  Similarity=0.262  Sum_probs=173.9

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce--ee-eeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccC
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV--LR-GEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHG   91 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~--~~-~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~   91 (342)
                      ..|...|.+++|+|.|++||+||.|.|+-||.-..+.  .. .+-+|...|.+++|+.++. +++||-|..+.+|.....
T Consensus        58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded  137 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED  137 (312)
T ss_pred             ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence            5788999999999999999999999999999976543  33 3348999999999996555 569999999999988755


Q ss_pred             ce----eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCC-CCCcceeeeeecCCCCcEEEEec--cCCeEEEEEc
Q 019384           92 KE----DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG-ASGQERTLVGTYPQPERVYSLSL--VGNRLVVATA  164 (342)
Q Consensus        92 ~~----~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~-~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~  164 (342)
                      .+    ..+..|+.-|..+.|+|...+|+|+|+|.+||+|+-.. ..=.....+..  ++.++.+++|  .++++++++.
T Consensus       138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g--~~~TVW~~~F~~~G~rl~s~sd  215 (312)
T KOG0645|consen  138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDG--HENTVWSLAFDNIGSRLVSCSD  215 (312)
T ss_pred             CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecC--ccceEEEEEecCCCceEEEecC
Confidence            53    36889999999999999999999999999999997652 21122223333  3346666665  4679999999


Q ss_pred             CCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceee
Q 019384          165 GRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVY  244 (342)
Q Consensus       165 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~  244 (342)
                      |++++||-+.+.-..      -.+..+..+++.  ...++++..|+.+.+  |-....-....+.+..+...    .|..
T Consensus       216 D~tv~Iw~~~~~~~~------~~sr~~Y~v~W~--~~~IaS~ggD~~i~l--f~~s~~~d~p~~~l~~~~~~----aHe~  281 (312)
T KOG0645|consen  216 DGTVSIWRLYTDLSG------MHSRALYDVPWD--NGVIASGGGDDAIRL--FKESDSPDEPSWNLLAKKEG----AHEV  281 (312)
T ss_pred             CcceEeeeeccCcch------hcccceEeeeec--ccceEeccCCCEEEE--EEecCCCCCchHHHHHhhhc----cccc
Confidence            999999987643111      111234456666  445777777777655  43322111112222221111    1112


Q ss_pred             eeeEEEEcCC-CCeEEEecCCCeEEEEeCC
Q 019384          245 PVNAIAFHPI-YGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       245 ~v~~v~~sp~-~~~l~sgs~Dg~I~iWd~~  273 (342)
                      .|++|+|.|. .++|++|+.||+|++|.++
T Consensus       282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            5999999995 6789999999999999764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=5.1e-27  Score=191.33  Aligned_cols=287  Identities=17%  Similarity=0.232  Sum_probs=210.1

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee---eeecCCceEEEEEe--CCCCeEEEecCCcEEEEEeccC
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG---EFMHGGPVLDCCFH--DDSSGFSASADHTVRRLVFSHG   91 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~---~~~h~~~V~~~~~~--~~~~~~s~s~D~~i~~w~~~~~   91 (342)
                      +|...|.+|+|+.+|.+|++|+.|+++++|++...+++.   ..+|.+.|-.++|.  ....+++++.|.+|++||..++
T Consensus        18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~   97 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG   97 (313)
T ss_pred             hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence            567899999999999999999999999999997654332   34799999999986  3557789999999999999988


Q ss_pred             ceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEE
Q 019384           92 KEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVN  169 (342)
Q Consensus        92 ~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~  169 (342)
                      +......-+..=.-+.|+|+|++++.+..|..|...|.++...     ....+..-.+..+++  +.+.++..+.-|+|.
T Consensus        98 k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~-----~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~  172 (313)
T KOG1407|consen   98 KCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKI-----VNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE  172 (313)
T ss_pred             cEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccce-----eehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence            7543222222333578999999999999999999999875322     222222222333443  445555555558999


Q ss_pred             EEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384          170 VYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI  249 (342)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  249 (342)
                      |......+.. +. ..+++..-.|+.+.|+|+++++|+.|..+.  +||..+---.+.  +.         .+..||+++
T Consensus       173 ILsypsLkpv-~s-i~AH~snCicI~f~p~GryfA~GsADAlvS--LWD~~ELiC~R~--is---------RldwpVRTl  237 (313)
T KOG1407|consen  173 ILSYPSLKPV-QS-IKAHPSNCICIEFDPDGRYFATGSADALVS--LWDVDELICERC--IS---------RLDWPVRTL  237 (313)
T ss_pred             EEeccccccc-cc-cccCCcceEEEEECCCCceEeeccccceee--ccChhHhhhhee--ec---------cccCceEEE
Confidence            9887654322 21 123344567888999999999999998765  599865322222  21         123589999


Q ss_pred             EEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384          250 AFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       250 ~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                      .||-+|++||+||+|..|-|=++++|..+.+.+ +.++-+.+||.|...+||-++.+-  +++.-.+-..+.++.++
T Consensus       238 SFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk--~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  238 SFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDK--DGDSNREAGTVKIFGLS  311 (313)
T ss_pred             EeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCC--CCccccccceeEEecCC
Confidence            999999999999999999999999999888765 678889999999999999888654  22223333355566553

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.4e-28  Score=198.35  Aligned_cols=231  Identities=18%  Similarity=0.255  Sum_probs=177.9

Q ss_pred             CCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCCc--eeeeeeecCCceEEEEEeC--CCCeEEEecCCcEEEEEecc
Q 019384           16 NPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASAN--VLRGEFMHGGPVLDCCFHD--DSSGFSASADHTVRRLVFSH   90 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~--~~~~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i~~w~~~~   90 (342)
                      -.-+++++.|+|++. .+.+++++.||++||||+...  -+.....|+.+|.++.|.+  ...+++.|.|++|++|+...
T Consensus        57 ~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r  136 (311)
T KOG0277|consen   57 YDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR  136 (311)
T ss_pred             eecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence            345789999999985 578899999999999997432  2444567999999999973  34467889999999999877


Q ss_pred             Cc-eeecccCCcceeEEEEeCC-CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec---cCCeEEEEEcC
Q 019384           91 GK-EDILGKHDAPVRCIEYSYA-AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL---VGNRLVVATAG  165 (342)
Q Consensus        91 ~~-~~~~~~h~~~V~~~~~~~~-~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~---~~~~~~~~s~d  165 (342)
                      ++ ..++.+|...|++.+|+|. .+.|+++|.|+++++||++...+ . +.+..+.  .++.++++   +.+.+++++.|
T Consensus       137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk-~-~~i~ah~--~Eil~cdw~ky~~~vl~Tg~vd  212 (311)
T KOG0277|consen  137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK-F-MSIEAHN--SEILCCDWSKYNHNVLATGGVD  212 (311)
T ss_pred             CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc-e-eEEEecc--ceeEeecccccCCcEEEecCCC
Confidence            66 5678999999999999994 57899999999999999986533 2 3344333  34666655   35688999999


Q ss_pred             CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384          166 RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP  245 (342)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~  245 (342)
                      +.|+.||+|+.+.+.                                               +.+.+|         ..+
T Consensus       213 ~~vr~wDir~~r~pl-----------------------------------------------~eL~gh---------~~A  236 (311)
T KOG0277|consen  213 NLVRGWDIRNLRTPL-----------------------------------------------FELNGH---------GLA  236 (311)
T ss_pred             ceEEEEehhhccccc-----------------------------------------------eeecCC---------ceE
Confidence            999999999864321                                               001122         236


Q ss_pred             eeEEEEcCCC-CeEEEecCCCeEEEEeCCCc-eeeeccCCCCcceEEEEECCC-CCEEEEEEecc
Q 019384          246 VNAIAFHPIY-GTFATGGCDGFVNVWDGNNK-KRLYQYSKYPTSIAALSFSRD-GRLLAVASSYT  307 (342)
Q Consensus       246 v~~v~~sp~~-~~l~sgs~Dg~I~iWd~~~~-~~~~~~~~~~~~V~~v~~spd-g~~las~s~~~  307 (342)
                      |+.|+|||.. ..|||++.|-++||||.+.+ .++.+...|+..|..+.||+- +.++|++ ++|
T Consensus       237 VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~-gWD  300 (311)
T KOG0277|consen  237 VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAST-GWD  300 (311)
T ss_pred             EEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeec-ccc
Confidence            8899999975 47899999999999998844 456777889999999999995 4466554 444

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.9e-27  Score=205.69  Aligned_cols=268  Identities=21%  Similarity=0.276  Sum_probs=200.7

Q ss_pred             CCCeEEEEEcCCCCe-EEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCCeEE-EecCCcEEEEEeccCc-ee
Q 019384           19 SDGISNLRFSNHSDH-LLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSGFS-ASADHTVRRLVFSHGK-ED   94 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~-l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~~~s-~s~D~~i~~w~~~~~~-~~   94 (342)
                      .+.|.+|+|||...+ +|++| .-++.||+..+...+. ....+..|.+++|-.|+.++. |...|.|+++|..++. .+
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR  104 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR  104 (487)
T ss_pred             cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence            578999999996543 55443 4479999987654333 345788999999987777764 5567899999955533 45


Q ss_pred             ecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec---cCCeEEEEEcCCeEEE
Q 019384           95 ILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL---VGNRLVVATAGRHVNV  170 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~---~~~~~~~~s~d~~v~i  170 (342)
                      .+..|+.+|..+.|+|++ ..|++|+.|+.+++||+.+..  .+.  ....++..+-+.++   +++.+++|++||+||+
T Consensus       105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--v~~--~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl  180 (487)
T KOG0310|consen  105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--VQA--ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL  180 (487)
T ss_pred             HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--EEE--EecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence            678999999999999966 567889999999999997543  221  22234455555544   3458999999999999


Q ss_pred             EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384          171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA  250 (342)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  250 (342)
                      ||.|......  .+..+..++..+.+.|.|..+++++..   .+++||+....+ ....+..|.+         .|+|++
T Consensus       181 ~DtR~~~~~v--~elnhg~pVe~vl~lpsgs~iasAgGn---~vkVWDl~~G~q-ll~~~~~H~K---------tVTcL~  245 (487)
T KOG0310|consen  181 WDTRSLTSRV--VELNHGCPVESVLALPSGSLIASAGGN---SVKVWDLTTGGQ-LLTSMFNHNK---------TVTCLR  245 (487)
T ss_pred             EEeccCCcee--EEecCCCceeeEEEcCCCCEEEEcCCC---eEEEEEecCCce-ehhhhhcccc---------eEEEEE
Confidence            9999863222  233445568888899998888777643   357799864322 2222333554         699999


Q ss_pred             EcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          251 FHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       251 ~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      +..++..|.+||.|+.|++||+.+.+.+..+. .+++|.+++.|||++.++.|-+++
T Consensus       246 l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnG  301 (487)
T KOG0310|consen  246 LASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNG  301 (487)
T ss_pred             eecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccc
Confidence            99999999999999999999998888887764 779999999999999999998876

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.6e-27  Score=202.39  Aligned_cols=235  Identities=19%  Similarity=0.199  Sum_probs=182.2

Q ss_pred             eecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCC
Q 019384           57 FMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASG  134 (342)
Q Consensus        57 ~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~  134 (342)
                      .+|..+|+.+.|.|+..+ ++|+.|++|++||..+++ +..+.+|++.|..++|+..|++++++|.|-.+++||.+... 
T Consensus       105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~-  183 (406)
T KOG0295|consen  105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF-  183 (406)
T ss_pred             hccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH-
Confidence            357788999999887655 588899999999999988 56789999999999999999999999999999999986421 


Q ss_pred             cceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEE
Q 019384          135 QERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAM  214 (342)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i  214 (342)
                      .....+..+++....+.+-+.++++++++.|.+|+.|++.++-...+..  +.+..+..+...-||..+++++.+.++++
T Consensus       184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~--~h~ewvr~v~v~~DGti~As~s~dqtl~v  261 (406)
T KOG0295|consen  184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP--GHSEWVRMVRVNQDGTIIASCSNDQTLRV  261 (406)
T ss_pred             HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc--CchHhEEEEEecCCeeEEEecCCCceEEE
Confidence            1111222333444445566678999999999999999999875433322  33345677778888888888888888776


Q ss_pred             EEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC---------------CCeEEEecCCCeEEEEeCCCceeee
Q 019384          215 EFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI---------------YGTFATGGCDGFVNVWDGNNKKRLY  279 (342)
Q Consensus       215 ~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~---------------~~~l~sgs~Dg~I~iWd~~~~~~~~  279 (342)
                      |.....+..    ..++.|         .++|-+++|-|.               +++++++|.|++|++||+.++.++.
T Consensus       262 W~~~t~~~k----~~lR~h---------Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~  328 (406)
T KOG0295|consen  262 WVVATKQCK----AELREH---------EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF  328 (406)
T ss_pred             EEeccchhh----hhhhcc---------ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE
Confidence            544432221    223333         347888887662               2589999999999999999999999


Q ss_pred             ccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          280 QYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       280 ~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      ++.+|.+.|..++|+|-|+||+++..+.
T Consensus       329 tL~ghdnwVr~~af~p~Gkyi~ScaDDk  356 (406)
T KOG0295|consen  329 TLVGHDNWVRGVAFSPGGKYILSCADDK  356 (406)
T ss_pred             EEecccceeeeeEEcCCCeEEEEEecCC
Confidence            9999999999999999999999887643

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=3.7e-27  Score=195.58  Aligned_cols=241  Identities=22%  Similarity=0.223  Sum_probs=186.5

Q ss_pred             CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCC-Ce-EEEecCCcEEEEEeccC
Q 019384           15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDS-SG-FSASADHTVRRLVFSHG   91 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~-~~-~s~s~D~~i~~w~~~~~   91 (342)
                      .++|+++|..|.|.+|+..|+|+|.|++++.||..+++. +....|.+-|+.+....-+ ++ .+++.|+++++||++++
T Consensus        86 lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k  165 (338)
T KOG0265|consen   86 LKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK  165 (338)
T ss_pred             eccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence            369999999999999999999999999999999998864 4556788889988855333 33 48899999999999987


Q ss_pred             ceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEE
Q 019384           92 KEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVY  171 (342)
Q Consensus        92 ~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iw  171 (342)
                      .......-..+++++.|..++..+.+|+-|+.|++||++.....  ..+..+..+.+-++++..+..+++-+-|.++++|
T Consensus       166 ~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~--~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvw  243 (338)
T KOG0265|consen  166 EAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL--YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVW  243 (338)
T ss_pred             chhhccccceeEEEEEecccccceeeccccCceeeeccccCcce--EEeecccCceeeEEeccCCCccccccccceEEEE
Confidence            75544445678999999999999999999999999999865442  2334444444445566677899999999999999


Q ss_pred             eCCCCCCccc---cc-cc--ccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384          172 DLRNMSQPEQ---RR-ES--SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP  245 (342)
Q Consensus       172 d~~~~~~~~~---~~-~~--~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~  245 (342)
                      |++-......   .. ..  .+..+...++|+|++..+-.++.|..+  ++||..  .....|.+.+|..         .
T Consensus       244 d~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~v--yvwd~~--~r~~lyklpGh~g---------s  310 (338)
T KOG0265|consen  244 DVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFV--YVWDTT--SRRILYKLPGHYG---------S  310 (338)
T ss_pred             EecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceE--EEeecc--cccEEEEcCCcce---------e
Confidence            9986532211   11 11  112223456789999999999988865  569973  2345567777765         6


Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEE
Q 019384          246 VNAIAFHPIYGTFATGGCDGFVNVW  270 (342)
Q Consensus       246 v~~v~~sp~~~~l~sgs~Dg~I~iW  270 (342)
                      |+++.|+|...+|.+++.|++|++=
T Consensus       311 vn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  311 VNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             EEEeeecCCCcEEEEeccCceeEee
Confidence            9999999999999999999999873

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=8.1e-28  Score=204.06  Aligned_cols=269  Identities=19%  Similarity=0.264  Sum_probs=199.9

Q ss_pred             CCCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHS-DHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~-~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~   93 (342)
                      .+|.++|++++-.|.. ..+|||+.||.|+|||+.... +.....|.|.|.++++.. ...++++.|.+++.|-+.....
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p~  141 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGPPL  141 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCCcc
Confidence            6899999999999987 779999999999999998765 455668999999999976 6689999999999998776433


Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC---CeEEEEEcCCeEEE
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG---NRLVVATAGRHVNV  170 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~---~~~~~~s~d~~v~i  170 (342)
                      ..+. -...+..++-+..+..++||+.  .|-|||.+...+.....+    ....+.++.+++   +.|+++..|+.|.|
T Consensus       142 ~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smsw----G~Dti~svkfNpvETsILas~~sDrsIvL  214 (433)
T KOG0268|consen  142 HTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSW----GADSISSVKFNPVETSILASCASDRSIVL  214 (433)
T ss_pred             eeee-ccccccccccccccccccccCc--eeeecccccCCccceeec----CCCceeEEecCCCcchheeeeccCCceEE
Confidence            2222 2245666776767778999886  789999865443222222    223455566654   36778889999999


Q ss_pred             EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384          171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA  250 (342)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  250 (342)
                      ||+|... +..+.  .+...++.++|.|+.-.+++++.|-.  ++.||.+.-..+    +..|.      +|+.+|..|.
T Consensus       215 yD~R~~~-Pl~KV--i~~mRTN~IswnPeafnF~~a~ED~n--lY~~DmR~l~~p----~~v~~------dhvsAV~dVd  279 (433)
T KOG0268|consen  215 YDLRQAS-PLKKV--ILTMRTNTICWNPEAFNFVAANEDHN--LYTYDMRNLSRP----LNVHK------DHVSAVMDVD  279 (433)
T ss_pred             EecccCC-cccee--eeeccccceecCccccceeecccccc--ceehhhhhhccc----chhhc------ccceeEEEec
Confidence            9999864 32222  34456788999997777777777664  567888643221    22222      4455899999


Q ss_pred             EcCCCCeEEEecCCCeEEEEeCCCceeeec-cCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          251 FHPIYGTFATGGCDGFVNVWDGNNKKRLYQ-YSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       251 ~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~-~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      |||.|+.+++||.|.+||||.+..+..-.. ++.....|.|+.||-|.+|+.+||.+.
T Consensus       280 fsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~  337 (433)
T KOG0268|consen  280 FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG  337 (433)
T ss_pred             cCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc
Confidence            999999999999999999999886543322 234455799999999999999988655

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.4e-26  Score=202.00  Aligned_cols=299  Identities=17%  Similarity=0.203  Sum_probs=218.7

Q ss_pred             CCCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee----e-------------e--eecCCceEEEE
Q 019384            7 PPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR----G-------------E--FMHGGPVLDCC   67 (342)
Q Consensus         7 ~~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~----~-------------~--~~h~~~V~~~~   67 (342)
                      |....+-+..+|.-.|.+++++|+..++.+++.|++|.=|++.+++..    .             .  ..|.+.+.+++
T Consensus       130 ~~s~~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~a  209 (479)
T KOG0299|consen  130 PESSDFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLA  209 (479)
T ss_pred             cccccceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEE
Confidence            333444455788999999999999999999999999999998665411    0             0  16788899999


Q ss_pred             EeCCCCe-EEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCC
Q 019384           68 FHDDSSG-FSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ  145 (342)
Q Consensus        68 ~~~~~~~-~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~  145 (342)
                      .+++++. ++++.|..+.+|+.++.+ ...+.+|.+.|.+++|-.....++++|.|++|++|+++....  ..  ..+.|
T Consensus       210 vS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~--ve--tlyGH  285 (479)
T KOG0299|consen  210 VSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY--VE--TLYGH  285 (479)
T ss_pred             EcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH--HH--HHhCC
Confidence            9977765 689999999999999988 456799999999999998788999999999999999863211  01  22345


Q ss_pred             CCcEEEEecc-CCeEEEE-EcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhh
Q 019384          146 PERVYSLSLV-GNRLVVA-TAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAS  223 (342)
Q Consensus       146 ~~~v~~~s~~-~~~~~~~-s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~  223 (342)
                      +..+..++.. ....+++ ..|+++++|++....+..-  . +....+.|+++-.+ ..+++|+.+|.+.  +|++...+
T Consensus       286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlif--r-g~~~sidcv~~In~-~HfvsGSdnG~Ia--LWs~~KKk  359 (479)
T KOG0299|consen  286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIF--R-GGEGSIDCVAFIND-EHFVSGSDNGSIA--LWSLLKKK  359 (479)
T ss_pred             ccceeeechhcccceEEeccccceeEEEeccccceeee--e-CCCCCeeeEEEecc-cceeeccCCceEE--EeeecccC
Confidence            6667777764 3455555 4899999999955432221  1 22335677766544 5689999999875  59885432


Q ss_pred             hcccceeeeEEecCCC--CceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCc----eeeeccCCCCcceEEEEECCCC
Q 019384          224 QAKKYAFKCHRKSEAG--RDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNK----KRLYQYSKYPTSIAALSFSRDG  297 (342)
Q Consensus       224 ~~~~~~~~~h~~~~~~--~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~----~~~~~~~~~~~~V~~v~~spdg  297 (342)
                      ...... ..|.-....  ......|++++..|...++|+||.+|.||+|-++++    .++..++ ..+.|++++|+++|
T Consensus       360 plf~~~-~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sg  437 (479)
T KOG0299|consen  360 PLFTSR-LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSG  437 (479)
T ss_pred             ceeEee-ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCC
Confidence            222111 233322211  111237999999999999999999999999998876    3345554 66889999999999


Q ss_pred             CEEEEEEeccccCCCCCCCC
Q 019384          298 RLLAVASSYTFEEGDKPHEP  317 (342)
Q Consensus       298 ~~las~s~~~~~~~~~~~~~  317 (342)
                      ++|++|..-..+-|++.+.+
T Consensus       438 k~ivagiGkEhRlGRW~~~k  457 (479)
T KOG0299|consen  438 KRIVAGIGKEHRLGRWWCLK  457 (479)
T ss_pred             CEEEEecccccccceeeEee
Confidence            99999988777777764433

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1.6e-27  Score=199.76  Aligned_cols=276  Identities=16%  Similarity=0.190  Sum_probs=210.3

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee---------eeecCCceEEEEEeCCCC-eEEEecCCcEEEEEe
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG---------EFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVF   88 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~---------~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~   88 (342)
                      ..-+-|..|||||++|+|||-||-|.|||..+++++.         ...+.++|.|++|+.|.. +++|+.||.|++|.+
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            4567899999999999999999999999998877543         224788999999996665 469999999999999


Q ss_pred             ccCce-eec-ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC
Q 019384           89 SHGKE-DIL-GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR  166 (342)
Q Consensus        89 ~~~~~-~~~-~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~  166 (342)
                      .++.+ +.+ ..|+..|+|+.|+.|+..++++|.|.++|+--+.++...  ..+..+..-..-..+..+|+.+++++.|+
T Consensus       293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L--KEfrGHsSyvn~a~ft~dG~~iisaSsDg  370 (508)
T KOG0275|consen  293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL--KEFRGHSSYVNEATFTDDGHHIISASSDG  370 (508)
T ss_pred             ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhH--HHhcCccccccceEEcCCCCeEEEecCCc
Confidence            99884 344 589999999999999999999999999999998765431  12222222222334667888999999999


Q ss_pred             eEEEEeCCCCCCcccccccccceeeEEEEEeeCCc-eEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384          167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGT-GYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP  245 (342)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~  245 (342)
                      +|++|+..+.+.............++.+...|.+. .++++...+++  ++.+... +..+.+. .+.+  +     .+.
T Consensus       371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv--~imn~qG-QvVrsfs-SGkR--E-----gGd  439 (508)
T KOG0275|consen  371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV--YIMNMQG-QVVRSFS-SGKR--E-----GGD  439 (508)
T ss_pred             cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeE--EEEeccc-eEEeeec-cCCc--c-----CCc
Confidence            99999999876654444444456677777777654 45666655554  4455521 1122221 1111  1     124


Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      .-+++.||.|.++.+.++|+.++.+.+.+++.-+++.-|...|..++-.|-.++||+=+.++
T Consensus       440 Fi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDg  501 (508)
T KOG0275|consen  440 FINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDG  501 (508)
T ss_pred             eEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccc
Confidence            56778999999999999999999999999998888999999999999999999999876654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=4.2e-27  Score=192.42  Aligned_cols=261  Identities=16%  Similarity=0.192  Sum_probs=189.9

Q ss_pred             CCCccCC--CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCC-----
Q 019384            9 TSGRELG--NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADH-----   81 (342)
Q Consensus         9 ~~~~~~~--~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~-----   81 (342)
                      .+|+-|+  .+|...|+++..+-+.++|+||+.|.+++|||+.+++.+.+..-..+|..+.|+.++.++.++.|.     
T Consensus        40 ~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~  119 (327)
T KOG0643|consen   40 LNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYT  119 (327)
T ss_pred             cCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcc
Confidence            4788888  699999999999999999999999999999999999999888888999999999888888777664     


Q ss_pred             -cEEEEEeccCc--------eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE
Q 019384           82 -TVRRLVFSHGK--------EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL  152 (342)
Q Consensus        82 -~i~~w~~~~~~--------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~  152 (342)
                       .|.+++++...        ...+.-+.+.++.+-|.|-++.|++|..||.|.+||.+++... ......+.....-..+
T Consensus       120 ~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~-v~s~~~h~~~Ind~q~  198 (327)
T KOG0643|consen  120 CFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL-VDSDEEHSSKINDLQF  198 (327)
T ss_pred             eEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee-eechhhhccccccccc
Confidence             57788876332        2345567789999999999999999999999999999865321 1111223333333445


Q ss_pred             eccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh-cccceee
Q 019384          153 SLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ-AKKYAFK  231 (342)
Q Consensus       153 s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~-~~~~~~~  231 (342)
                      +.+...+++++.|.+-++||+++.......   ....++++.+++|....+++++......+.--+.+..+- .+-+.+-
T Consensus       199 s~d~T~FiT~s~Dttakl~D~~tl~v~Kty---~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i  275 (327)
T KOG0643|consen  199 SRDRTYFITGSKDTTAKLVDVRTLEVLKTY---TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLI  275 (327)
T ss_pred             cCCcceEEecccCccceeeeccceeeEEEe---eecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHH
Confidence            556678999999999999999986443221   122357788899988877777655444332222211110 0101110


Q ss_pred             eEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          232 CHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       232 ~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      ..++...-..|.+||++|+|||+|+.++||++||+||+.-.+
T Consensus       276 ~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  276 FEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             HHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence            111111224566799999999999999999999999998544

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.9e-27  Score=202.92  Aligned_cols=246  Identities=20%  Similarity=0.253  Sum_probs=182.6

Q ss_pred             cCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecC--CceEEEEEeCCCC-eEEEecCCcEEEEEec
Q 019384           13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHG--GPVLDCCFHDDSS-GFSASADHTVRRLVFS   89 (342)
Q Consensus        13 ~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~--~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~   89 (342)
                      +...+|...|..+.||||.++|++++.|..+++||+.++.++..+.++  ..+.+|+|.||+. +++|+.|+++..|+++
T Consensus       263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD  342 (519)
T KOG0293|consen  263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD  342 (519)
T ss_pred             eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence            344789999999999999999999999999999999999888877655  7899999987765 5799999999999998


Q ss_pred             cCceeecccC-CcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeE
Q 019384           90 HGKEDILGKH-DAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHV  168 (342)
Q Consensus        90 ~~~~~~~~~h-~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v  168 (342)
                      ........+- ...|.+++.++||+.+++...|..|++++.++...  +... ...++....+++-+++.+++.-.+.++
T Consensus       343 gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d--r~li-se~~~its~~iS~d~k~~LvnL~~qei  419 (519)
T KOG0293|consen  343 GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD--RGLI-SEEQPITSFSISKDGKLALVNLQDQEI  419 (519)
T ss_pred             cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh--hccc-cccCceeEEEEcCCCcEEEEEcccCee
Confidence            7665444443 36799999999999999999999999999764221  1111 222334445556667788888999999


Q ss_pred             EEEeCCCCCCcccccccccc-eeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384          169 NVYDLRNMSQPEQRRESSLK-YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN  247 (342)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  247 (342)
                      ++||+...........+... +-+.++.-.-+...+++||.|+++  ++|+....  ...-.+.+|.+         .|+
T Consensus       420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv--yIWhr~sg--kll~~LsGHs~---------~vN  486 (519)
T KOG0293|consen  420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV--YIWHRISG--KLLAVLSGHSK---------TVN  486 (519)
T ss_pred             EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceE--EEEEccCC--ceeEeecCCcc---------eee
Confidence            99999864332222111111 222322223445678999999976  56987543  23344566654         699


Q ss_pred             EEEEcCCCC-eEEEecCCCeEEEEeCCC
Q 019384          248 AIAFHPIYG-TFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       248 ~v~~sp~~~-~l~sgs~Dg~I~iWd~~~  274 (342)
                      +|+|+|... ++|+||.||+||||....
T Consensus       487 cVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  487 CVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             EEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            999999754 899999999999997653

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.3e-25  Score=209.91  Aligned_cols=267  Identities=12%  Similarity=0.110  Sum_probs=183.4

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee--------------eeeecCCceEEEEEeC-CC-CeEEEecCC
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR--------------GEFMHGGPVLDCCFHD-DS-SGFSASADH   81 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~--------------~~~~h~~~V~~~~~~~-~~-~~~s~s~D~   81 (342)
                      +-..|....+++++..+++++.+..+..|+..++...              ...+|.+.|.+++|+| ++ .+++|+.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            3456667777888888889999999999986543211              2457999999999987 54 567999999


Q ss_pred             cEEEEEeccCc--------eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEE-
Q 019384           82 TVRRLVFSHGK--------EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYS-  151 (342)
Q Consensus        82 ~i~~w~~~~~~--------~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~-  151 (342)
                      +|++|++....        ...+.+|...|.+++|+|++ +.|+||+.|++|+|||++++..  ...+..  +...+.+ 
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~--~~~l~~--h~~~V~sl  174 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA--VEVIKC--HSDQITSL  174 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE--EEEEcC--CCCceEEE
Confidence            99999997642        23578899999999999975 6899999999999999975432  122222  3334544 


Q ss_pred             -EeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC--CeEEEEEeechhhhhcccc
Q 019384          152 -LSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE--GRVAMEFFDLSEASQAKKY  228 (342)
Q Consensus       152 -~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~--~~~~i~~~d~~~~~~~~~~  228 (342)
                       ++.+++.+++++.|++|++||+++++.... ...+.......+.+.+++..+++++.+  .+..+++||.+....... 
T Consensus       175 a~spdG~lLatgs~Dg~IrIwD~rsg~~v~t-l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~-  252 (493)
T PTZ00421        175 EWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS-VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS-  252 (493)
T ss_pred             EEECCCCEEEEecCCCEEEEEECCCCcEEEE-EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee-
Confidence             455677899999999999999998643221 111111223455677777766654321  223456799864322111 


Q ss_pred             eeeeEEecCCCCceeeeeeEEEEcCCCCeEEEec-CCCeEEEEeCCCceeeeccC-CCCcceEEEEECCCCC
Q 019384          229 AFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGG-CDGFVNVWDGNNKKRLYQYS-KYPTSIAALSFSRDGR  298 (342)
Q Consensus       229 ~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs-~Dg~I~iWd~~~~~~~~~~~-~~~~~V~~v~~spdg~  298 (342)
                      ....+.        ...+....|++++.+|++|+ .|++|++||+.+++.+.... .+...+..++|.|.-.
T Consensus       253 ~~~~d~--------~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~  316 (493)
T PTZ00421        253 TVDLDQ--------SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS  316 (493)
T ss_pred             EeccCC--------CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc
Confidence            111111        11355667999999998887 59999999999887665443 2445678888888533

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.6e-26  Score=188.46  Aligned_cols=241  Identities=24%  Similarity=0.287  Sum_probs=187.7

Q ss_pred             eeeeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCce---eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEc
Q 019384           54 RGEFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKE---DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWD  128 (342)
Q Consensus        54 ~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~---~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd  128 (342)
                      +.+.+|.+.|.+++|. ++..+++++.|+++.+|.++..+.   ....+|++.|-+++|.|.. ++|++++.|++|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            3445799999999997 555678999999999999887652   3467899999999999854 7899999999999999


Q ss_pred             CCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc
Q 019384          129 PRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV  208 (342)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~  208 (342)
                      .+.+++..+   ...........+++++++++.+..|..|.+.|.++.+.....   ..+..++.++|+.++..++..+.
T Consensus        94 ~r~~k~~~~---i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~---~~~~e~ne~~w~~~nd~Fflt~G  167 (313)
T KOG1407|consen   94 IRSGKCTAR---IETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE---QFKFEVNEISWNNSNDLFFLTNG  167 (313)
T ss_pred             eccCcEEEE---eeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh---cccceeeeeeecCCCCEEEEecC
Confidence            987654211   112233445678888999999999999999999986432211   23345666778877777777777


Q ss_pred             CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcce
Q 019384          209 EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSI  288 (342)
Q Consensus       209 ~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V  288 (342)
                      .|.+.|  ....  .......+++|..         ..-||.|+|+|++||+|+.|-.+-+||++..-+++.++.+.-+|
T Consensus       168 lG~v~I--Lsyp--sLkpv~si~AH~s---------nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpV  234 (313)
T KOG1407|consen  168 LGCVEI--LSYP--SLKPVQSIKAHPS---------NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPV  234 (313)
T ss_pred             CceEEE--Eecc--ccccccccccCCc---------ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCce
Confidence            788766  3332  2344566777753         36678999999999999999999999999888888999999999


Q ss_pred             EEEEECCCCCEEEEEEeccc------cCCCC
Q 019384          289 AALSFSRDGRLLAVASSYTF------EEGDK  313 (342)
Q Consensus       289 ~~v~~spdg~~las~s~~~~------~~~~~  313 (342)
                      ..++||-||++||++|.+.+      ++|++
T Consensus       235 RTlSFS~dg~~lASaSEDh~IDIA~vetGd~  265 (313)
T KOG1407|consen  235 RTLSFSHDGRMLASASEDHFIDIAEVETGDR  265 (313)
T ss_pred             EEEEeccCcceeeccCccceEEeEecccCCe
Confidence            99999999999999998533      55664

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=8.1e-27  Score=197.12  Aligned_cols=237  Identities=16%  Similarity=0.252  Sum_probs=180.0

Q ss_pred             cCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcce
Q 019384           59 HGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQER  137 (342)
Q Consensus        59 h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~  137 (342)
                      ..+.|+|+.+ +|..+++|.-|.+|++||..... ...+.||++.|.|+.|.  ...|+|||.|.||++||.+++...  
T Consensus       196 ~skgVYClQY-DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l--  270 (499)
T KOG0281|consen  196 NSKGVYCLQY-DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL--  270 (499)
T ss_pred             cCCceEEEEe-cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh--
Confidence            4567899988 46678999999999999987766 45789999999999985  468999999999999999876542  


Q ss_pred             eeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcc-cccccccceeeEEEEEeeCCceEEEEccCCeEEEEE
Q 019384          138 TLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE-QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEF  216 (342)
Q Consensus       138 ~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~  216 (342)
                      .  ....+...+..+-++.+.+++++.|.++.+||+....... .+....+...++.|.+.  .+++++++.|.++  +.
T Consensus       271 ~--tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTi--kv  344 (499)
T KOG0281|consen  271 N--TLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI--KV  344 (499)
T ss_pred             h--HHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceE--EE
Confidence            1  1223556678888888999999999999999998764221 11112223334555443  4578888888765  56


Q ss_pred             eechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCC
Q 019384          217 FDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRD  296 (342)
Q Consensus       217 ~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spd  296 (342)
                      |++.+..  ....+.+|+.         .|.|+.+  .++++++||.|.+|++||++.|.+++.++||..-|.++.|  |
T Consensus       345 W~~st~e--fvRtl~gHkR---------GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d  409 (499)
T KOG0281|consen  345 WSTSTCE--FVRTLNGHKR---------GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--D  409 (499)
T ss_pred             Eecccee--eehhhhcccc---------cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--c
Confidence            8886543  3344667765         3666666  5889999999999999999999999999999999999999  4


Q ss_pred             CCEEEEEEeccccCCCCCCCCCcEEEEEccCCccccC
Q 019384          297 GRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIEVKPK  333 (342)
Q Consensus       297 g~~las~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (342)
                      .+.+++|..++           +|.+|.+. -+-.||
T Consensus       410 ~krIVSGaYDG-----------kikvWdl~-aaldpr  434 (499)
T KOG0281|consen  410 NKRIVSGAYDG-----------KIKVWDLQ-AALDPR  434 (499)
T ss_pred             Cceeeeccccc-----------eEEEEecc-cccCCc
Confidence            57788888777           69999883 334443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=6.2e-25  Score=219.64  Aligned_cols=248  Identities=15%  Similarity=0.159  Sum_probs=175.7

Q ss_pred             CCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeC-CC-CeEEEecCCcEEEEEeccCcee
Q 019384           19 SDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHD-DS-SGFSASADHTVRRLVFSHGKED   94 (342)
Q Consensus        19 ~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~-~~-~~~s~s~D~~i~~w~~~~~~~~   94 (342)
                      ...|.+++|++ ++.+||+++.||+|+|||+.++... ....|.+.|++++|++ ++ .+++|+.|++|++||+.++...
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~  611 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI  611 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence            45789999987 4789999999999999999876544 4457999999999984 44 4679999999999999877643


Q ss_pred             ecccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec-cCCeEEEEEcCCeEEEEe
Q 019384           95 ILGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL-VGNRLVVATAGRHVNVYD  172 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~-~~~~~~~~s~d~~v~iwd  172 (342)
                      ....+...|.++.|++ ++..|++|+.|++|++||+++.... ...+.  .+...+..+.+ +++.+++++.|++|++||
T Consensus       612 ~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~-~~~~~--~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd  688 (793)
T PLN00181        612 GTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP-LCTMI--GHSKTVSYVRFVDSSTLVSSSTDNTLKLWD  688 (793)
T ss_pred             EEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc-ceEec--CCCCCEEEEEEeCCCEEEEEECCCEEEEEe
Confidence            2222346799999964 6889999999999999999754321 11122  23344555555 567899999999999999


Q ss_pred             CCCCCC-----cccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecC--CCCceeee
Q 019384          173 LRNMSQ-----PEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSE--AGRDIVYP  245 (342)
Q Consensus       173 ~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~--~~~~~~~~  245 (342)
                      ++....     +.... ..+...+.++++++++..+++++.|+.+.+  |+.........+.+.......  ....+...
T Consensus       689 ~~~~~~~~~~~~l~~~-~gh~~~i~~v~~s~~~~~lasgs~D~~v~i--w~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  765 (793)
T PLN00181        689 LSMSISGINETPLHSF-MGHTNVKNFVGLSVSDGYIATGSETNEVFV--YHKAFPMPVLSYKFKTIDPVSGLEVDDASQF  765 (793)
T ss_pred             CCCCccccCCcceEEE-cCCCCCeeEEEEcCCCCEEEEEeCCCEEEE--EECCCCCceEEEecccCCcccccccCCCCcE
Confidence            975321     11111 122334577889999999999999998754  775432111111111000000  00122236


Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEEeC
Q 019384          246 VNAIAFHPIYGTFATGGCDGFVNVWDG  272 (342)
Q Consensus       246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~  272 (342)
                      |++++|+|++.+|++|+.||+|+||++
T Consensus       766 V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        766 ISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            999999999999999999999999985

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=8.4e-25  Score=204.53  Aligned_cols=203  Identities=18%  Similarity=0.190  Sum_probs=148.5

Q ss_pred             CCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCce--------eeeeeecCCceEEEEEeCCC--CeEEEecCCcEE
Q 019384           16 NPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANV--------LRGEFMHGGPVLDCCFHDDS--SGFSASADHTVR   84 (342)
Q Consensus        16 ~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~--------~~~~~~h~~~V~~~~~~~~~--~~~s~s~D~~i~   84 (342)
                      .+|.+.|++++|+| ++++|||||.|++|+|||+..+.        +....+|...|.+++|+|..  .+++++.|++|+
T Consensus        72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVr  151 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVN  151 (493)
T ss_pred             eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEE
Confidence            57899999999999 88999999999999999986532        33456799999999999753  467999999999


Q ss_pred             EEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC-cEEEEeccCCeEEEE
Q 019384           85 RLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE-RVYSLSLVGNRLVVA  162 (342)
Q Consensus        85 ~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~-~v~~~s~~~~~~~~~  162 (342)
                      +||+.++.. ..+.+|...|.+++|+|++.+|++++.|++|++||++++..  ...+..+.... ....+..+.+.++++
T Consensus       152 IWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~--v~tl~~H~~~~~~~~~w~~~~~~ivt~  229 (493)
T PTZ00421        152 VWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI--VSSVEAHASAKSQRCLWAKRKDLIITL  229 (493)
T ss_pred             EEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE--EEEEecCCCCcceEEEEcCCCCeEEEE
Confidence            999988763 45778999999999999999999999999999999986432  12222222211 122234445566655


Q ss_pred             E----cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhh
Q 019384          163 T----AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEA  222 (342)
Q Consensus       163 s----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~  222 (342)
                      +    .|+.|++||+++...+...........+....+++++..+++++. |+.+  ++||+...
T Consensus       230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I--riwdl~~~  292 (493)
T PTZ00421        230 GCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNI--RCFELMNE  292 (493)
T ss_pred             ecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeE--EEEEeeCC
Confidence            4    468999999987654432221111122334567889888888764 6654  66998643

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.1e-25  Score=197.73  Aligned_cols=237  Identities=25%  Similarity=0.319  Sum_probs=180.3

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-eeeeeeecCCceEEEEEeC-CCCe-EEEecCCcEEEEEeccCce
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-VLRGEFMHGGPVLDCCFHD-DSSG-FSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-~~~~~~~h~~~V~~~~~~~-~~~~-~s~s~D~~i~~w~~~~~~~   93 (342)
                      ...+.|+++.|-.||.+||.|...|.|+|||.++. .++...+|+.+|..+.|++ ++++ ++|+.|+.+++||+.+...
T Consensus        66 rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v  145 (487)
T KOG0310|consen   66 RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV  145 (487)
T ss_pred             hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE
Confidence            45689999999999999999999999999996553 3566778999999999984 4444 5788888999999998875


Q ss_pred             e-ecccCCcceeEEEEeCCCC-EEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEE
Q 019384           94 D-ILGKHDAPVRCIEYSYAAG-QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVN  169 (342)
Q Consensus        94 ~-~~~~h~~~V~~~~~~~~~~-~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~  169 (342)
                      . .+.+|++.|+|.+|+|... .++|||+||+||+||+++.+.    .+....+...+-.+.+  ++..|++|+ +..|+
T Consensus       146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~----~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vk  220 (487)
T KOG0310|consen  146 QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS----RVVELNHGCPVESVLALPSGSLIASAG-GNSVK  220 (487)
T ss_pred             EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc----eeEEecCCCceeeEEEcCCCCEEEEcC-CCeEE
Confidence            4 5789999999999999654 789999999999999987542    1223334444544444  344555544 45899


Q ss_pred             EEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384          170 VYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI  249 (342)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  249 (342)
                      +||+.++.+....... +.-.++|+.+..++..+++++.|+.+++  ||+..-+....+.            ..+||.++
T Consensus       221 VWDl~~G~qll~~~~~-H~KtVTcL~l~s~~~rLlS~sLD~~VKV--fd~t~~Kvv~s~~------------~~~pvLsi  285 (487)
T KOG0310|consen  221 VWDLTTGGQLLTSMFN-HNKTVTCLRLASDSTRLLSGSLDRHVKV--FDTTNYKVVHSWK------------YPGPVLSI  285 (487)
T ss_pred             EEEecCCceehhhhhc-ccceEEEEEeecCCceEeecccccceEE--EEccceEEEEeee------------cccceeeE
Confidence            9999876554433332 2335889999889999999999998755  8864332222222            23489999


Q ss_pred             EEcCCCCeEEEecCCCeEEEEeCC
Q 019384          250 AFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       250 ~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      +.+|+++.++.|..||.+-+=+..
T Consensus       286 avs~dd~t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  286 AVSPDDQTVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             EecCCCceEEEecccceeeeehhh
Confidence            999999999999999988776444

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.94  E-value=1.8e-25  Score=189.63  Aligned_cols=235  Identities=24%  Similarity=0.333  Sum_probs=189.4

Q ss_pred             ecCCceEEEEEeCCCCeE-EEecCCcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCc
Q 019384           58 MHGGPVLDCCFHDDSSGF-SASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ  135 (342)
Q Consensus        58 ~h~~~V~~~~~~~~~~~~-s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~  135 (342)
                      +|.+-|.++++.|.++++ +++.|+++++||+.++.. ..+.+|-..|..+++++...++++++.|+.|+-||++...  
T Consensus       149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk--  226 (460)
T KOG0285|consen  149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK--  226 (460)
T ss_pred             hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh--
Confidence            699999999999888875 899999999999999985 4678999999999999999999999999999999997432  


Q ss_pred             ceeee-eecCCCCcEEEEeccC--CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeE
Q 019384          136 ERTLV-GTYPQPERVYSLSLVG--NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRV  212 (342)
Q Consensus       136 ~~~~~-~~~~~~~~v~~~s~~~--~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~  212 (342)
                         .+ ..+.+-..|.+++..+  +.+++++.|.++|+||+|+......  ...+...+..|.+-|.+..++++|.|+++
T Consensus       227 ---vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~--l~GH~~~V~~V~~~~~dpqvit~S~D~tv  301 (460)
T KOG0285|consen  227 ---VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV--LSGHTNPVASVMCQPTDPQVITGSHDSTV  301 (460)
T ss_pred             ---hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEE--ecCCCCcceeEEeecCCCceEEecCCceE
Confidence               22 2334556678888764  5899999999999999998643221  22344567788888888889999999987


Q ss_pred             EEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEE
Q 019384          213 AMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALS  292 (342)
Q Consensus       213 ~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~  292 (342)
                      +  +||++....  ...+..|.+         .|++++.+|.-..+|+++.| .|+-|++-.+..++.+.+|...|++++
T Consensus       302 r--lWDl~agkt--~~tlt~hkk---------svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~  367 (460)
T KOG0285|consen  302 R--LWDLRAGKT--MITLTHHKK---------SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLS  367 (460)
T ss_pred             E--EeeeccCce--eEeeecccc---------eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeee
Confidence            5  699965432  233455554         59999999998899999988 789999999999999999999999999


Q ss_pred             ECCCCCEEEEEEe------ccccCCCCC
Q 019384          293 FSRDGRLLAVASS------YTFEEGDKP  314 (342)
Q Consensus       293 ~spdg~~las~s~------~~~~~~~~~  314 (342)
                      .+.||.+++ |+.      ++|+.|-++
T Consensus       368 ~nsD~v~~~-G~dng~~~fwdwksg~ny  394 (460)
T KOG0285|consen  368 VNSDGVLVS-GGDNGSIMFWDWKSGHNY  394 (460)
T ss_pred             eccCceEEE-cCCceEEEEEecCcCccc
Confidence            999998765 543      555555543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.94  E-value=6.8e-26  Score=198.82  Aligned_cols=242  Identities=19%  Similarity=0.334  Sum_probs=185.3

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCC--CeEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDS--SGFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~--~~~s~s~D~~i~~w~~~~~~~   93 (342)
                      -+|...|.+++|+.+|..++|+|.|+++++||+.+|.....+.-...++|+.|.|++  .+++|+.|+.|+.||+++++.
T Consensus       255 ~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv  334 (503)
T KOG0282|consen  255 KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV  334 (503)
T ss_pred             hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH
Confidence            478999999999999999999999999999999999887766556677899998765  357899999999999999883


Q ss_pred             -eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384           94 -DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD  172 (342)
Q Consensus        94 -~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd  172 (342)
                       ..+..|-+.|..+.|-+++.+++|++.|++++||+.+.+-... .......+....+.+.+++..++.-+-|+.|-+|.
T Consensus       335 vqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik-~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs  413 (503)
T KOG0282|consen  335 VQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK-NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS  413 (503)
T ss_pred             HHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch-hhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence             4567788999999999999999999999999999986532211 11122234555666777778888889999999998


Q ss_pred             CCCCCCcc--ccc-ccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384          173 LRNMSQPE--QRR-ESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI  249 (342)
Q Consensus       173 ~~~~~~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  249 (342)
                      +...-...  .++ .+...+-...+.|+|||.++++|..+|.+.  +||..+.+...  .+++|.+         ++..+
T Consensus       414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~--~wdwkt~kl~~--~lkah~~---------~ci~v  480 (503)
T KOG0282|consen  414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVN--FWDWKTTKLVS--KLKAHDQ---------PCIGV  480 (503)
T ss_pred             cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEE--Eeechhhhhhh--ccccCCc---------ceEEE
Confidence            65432111  111 112223345688999999999999999764  58876544332  3445533         68889


Q ss_pred             EEcCCC-CeEEEecCCCeEEEEe
Q 019384          250 AFHPIY-GTFATGGCDGFVNVWD  271 (342)
Q Consensus       250 ~~sp~~-~~l~sgs~Dg~I~iWd  271 (342)
                      .|||.- ..+|+|++||.|++||
T Consensus       481 ~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  481 DWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EecCCCcceeEecccCceeEecC
Confidence            999974 4799999999999996

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=5e-25  Score=210.02  Aligned_cols=276  Identities=20%  Similarity=0.233  Sum_probs=200.5

Q ss_pred             CCCeEEEEEcCCCCeEEEEe--CCCcEEEEECCC------------ce-eeeeeecCCceEEEEEeCCCC-eEEEecCCc
Q 019384           19 SDGISNLRFSNHSDHLLVSS--WDKSVRLYDASA------------NV-LRGEFMHGGPVLDCCFHDDSS-GFSASADHT   82 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s--~Dgti~vwd~~~------------~~-~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~   82 (342)
                      ...|++|..+|++..+|||+  .|+.++||+..-            .+ +-....|.+.|+|+.|+++++ +++||.|+.
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~   92 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL   92 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence            44599999999999999999  999999999641            11 223346999999999997776 568999999


Q ss_pred             EEEEEecc----------Cc---------eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeec
Q 019384           83 VRRLVFSH----------GK---------EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTY  143 (342)
Q Consensus        83 i~~w~~~~----------~~---------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~  143 (342)
                      |.+|....          +.         ...+.+|...|..++|+|++.+|+|+|.|++|.+|+.++..  ....+..|
T Consensus        93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~--~~~vl~~H  170 (942)
T KOG0973|consen   93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE--LLKVLRGH  170 (942)
T ss_pred             EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce--eeeeeecc
Confidence            99998872          11         12567899999999999999999999999999999987642  23344555


Q ss_pred             CCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCccccc----ccccceeeEEEEEeeCCceEEEEcc--CCeEEEEEe
Q 019384          144 PQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRR----ESSLKYQTRCVRCYPNGTGYALSSV--EGRVAMEFF  217 (342)
Q Consensus       144 ~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~s~--~~~~~i~~~  217 (342)
                      .....-+.+++.|.+|++-+.|++|++|+..+-.......    .......+..++|+|||+++++...  ++.-.+.++
T Consensus       171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii  250 (942)
T KOG0973|consen  171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII  250 (942)
T ss_pred             cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence            5455555677778899999999999999965532211110    1122344667899999999876632  222233334


Q ss_pred             echhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC-----CC------------eEEEecCCCeEEEEeCCCceeeec
Q 019384          218 DLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI-----YG------------TFATGGCDGFVNVWDGNNKKRLYQ  280 (342)
Q Consensus       218 d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~-----~~------------~l~sgs~Dg~I~iWd~~~~~~~~~  280 (342)
                      +-.  ...-...+.+|.+         |+.+++|+|.     .+            .+|+||.|++|-||.....+++..
T Consensus       251 eR~--tWk~~~~LvGH~~---------p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v  319 (942)
T KOG0973|consen  251 ERG--TWKVDKDLVGHSA---------PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV  319 (942)
T ss_pred             ecC--CceeeeeeecCCC---------ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhh
Confidence            321  1111234555654         7999999982     11            579999999999999877776544


Q ss_pred             cC-CCCcceEEEEECCCCCEEEEEEecc
Q 019384          281 YS-KYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       281 ~~-~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      .. -....|.+|+|||||..|.++|.++
T Consensus       320 i~~lf~~SI~DmsWspdG~~LfacS~DG  347 (942)
T KOG0973|consen  320 IHNLFNKSIVDMSWSPDGFSLFACSLDG  347 (942)
T ss_pred             hhhhhcCceeeeeEcCCCCeEEEEecCC
Confidence            32 2345799999999999999898765

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=2.5e-24  Score=202.60  Aligned_cols=226  Identities=15%  Similarity=0.102  Sum_probs=157.8

Q ss_pred             CCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCCce---------eeeeeecCCceEEEEEeCCCC-e-EEEecCCcE
Q 019384           16 NPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASANV---------LRGEFMHGGPVLDCCFHDDSS-G-FSASADHTV   83 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~~---------~~~~~~h~~~V~~~~~~~~~~-~-~s~s~D~~i   83 (342)
                      ..|.+.|.+++|+|+ +++|||||.|++|+|||+..+.         +....+|.+.|.+++|+|++. + ++++.|++|
T Consensus        71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtI  150 (568)
T PTZ00420         71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFV  150 (568)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeE
Confidence            578999999999997 7899999999999999986531         123457999999999998664 3 588999999


Q ss_pred             EEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEE-----EeccCCe
Q 019384           84 RRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYS-----LSLVGNR  158 (342)
Q Consensus        84 ~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~-----~s~~~~~  158 (342)
                      ++||+.++.......|...|.+++|+|+|.+|++++.|++|+|||++++..  ...+..+........     ++.+++.
T Consensus       151 rIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~--i~tl~gH~g~~~s~~v~~~~fs~d~~~  228 (568)
T PTZ00420        151 NIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI--ASSFHIHDGGKNTKNIWIDGLGGDDNY  228 (568)
T ss_pred             EEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE--EEEEecccCCceeEEEEeeeEcCCCCE
Confidence            999998877433224667899999999999999999999999999986432  122333322211111     2234567


Q ss_pred             EEEEEcCC----eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEE
Q 019384          159 LVVATAGR----HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR  234 (342)
Q Consensus       159 ~~~~s~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~  234 (342)
                      +++++.|+    +|+|||+++...+...           +            .         .|.  .            
T Consensus       229 IlTtG~d~~~~R~VkLWDlr~~~~pl~~-----------~------------~---------ld~--~------------  262 (568)
T PTZ00420        229 ILSTGFSKNNMREMKLWDLKNTTSALVT-----------M------------S---------IDN--A------------  262 (568)
T ss_pred             EEEEEcCCCCccEEEEEECCCCCCceEE-----------E------------E---------ecC--C------------
Confidence            88877664    6999999864221100           0            0         000  0            


Q ss_pred             ecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCcee--eeccCCCCcceEEEEECCCCC
Q 019384          235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKR--LYQYSKYPTSIAALSFSRDGR  298 (342)
Q Consensus       235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~--~~~~~~~~~~V~~v~~spdg~  298 (342)
                              ...+...-..+++.+|++|+.|++|++|++..+..  +..+ .+..++.+++|.|+..
T Consensus       263 --------~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~-~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        263 --------SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEY-KSCSPFRSFGFLPKQI  319 (568)
T ss_pred             --------ccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeeccc-ccCCCccceEEccccc
Confidence                    00122222345688899999999999999976542  2222 2556789999999755

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.94  E-value=1.6e-24  Score=184.24  Aligned_cols=282  Identities=15%  Similarity=0.185  Sum_probs=192.6

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~   93 (342)
                      ..|.+.|++++.+|+.+.++||+.|....||++.++.... ..+|++.|+++.|+.++++ +||..+|.+++|...++..
T Consensus        61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~  140 (399)
T KOG0296|consen   61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE  140 (399)
T ss_pred             hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce
Confidence            4789999999999999999999999999999999887544 4589999999999966665 6899999999999998874


Q ss_pred             e-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384           94 D-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD  172 (342)
Q Consensus        94 ~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd  172 (342)
                      . .+..-...|.=+.|+|.+..|+.|+.||.+-+|.+.+. ... ..+..+....+.-.|.++|++++++..|++|++||
T Consensus       141 ~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~-kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn  218 (399)
T KOG0296|consen  141 QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALC-KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN  218 (399)
T ss_pred             EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc-cee-eEecCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence            3 34344456777889999999999999999999998753 222 33444444444556888899999999999999999


Q ss_pred             CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhh--------hhcccceeeeEEecCCCCceee
Q 019384          173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEA--------SQAKKYAFKCHRKSEAGRDIVY  244 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~--------~~~~~~~~~~h~~~~~~~~~~~  244 (342)
                      ..+..... +....-.....|+.+...+..+..++.++.+.+  .+....        ..+..  ...+..      ...
T Consensus       219 ~ktg~p~~-~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~--~~~~sgKVv~~~n~~~~~l--~~~~e~------~~e  287 (399)
T KOG0296|consen  219 PKTGQPLH-KITQAEGLELPCISLNLAGSTLTKGNSEGVACG--VNNGSGKVVNCNNGTVPEL--KPSQEE------LDE  287 (399)
T ss_pred             cCCCceeE-EecccccCcCCccccccccceeEeccCCccEEE--EccccceEEEecCCCCccc--cccchh------hhh
Confidence            99874322 221111111233333333333333333333211  111100        00000  001111      111


Q ss_pred             eeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe------ccccCCC
Q 019384          245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS------YTFEEGD  312 (342)
Q Consensus       245 ~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~------~~~~~~~  312 (342)
                      .|-++.++..=...|+|+.||+|-|||....+..+.+ .|...|..+.|-+ -.+|++++.      |+.+.|+
T Consensus       288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~  359 (399)
T KOG0296|consen  288 SVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ  359 (399)
T ss_pred             hhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccc
Confidence            2344445555567799999999999999876544444 4888899999998 566677776      5667777

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=2.6e-24  Score=201.77  Aligned_cols=261  Identities=19%  Similarity=0.244  Sum_probs=201.3

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eee-eeecCCceEEEEEeC-CCCeEEEecCCcEEEEEeccCce-
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRG-EFMHGGPVLDCCFHD-DSSGFSASADHTVRRLVFSHGKE-   93 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~-~~~h~~~V~~~~~~~-~~~~~s~s~D~~i~~w~~~~~~~-   93 (342)
                      +...|.+..|.  .+++++++.|.+|++||...+. ++. ..+|.+.|.+++|.. +..+++|+.|.++++||..++.. 
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~  284 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT  284 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence            45678888888  5789999999999999998775 444 679999999999974 66788999999999999998884 


Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeC
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDL  173 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~  173 (342)
                      ..+.+|...|.++...  ..++++||.|.+|++|+++++..  ...+..  +...|.++..+++.++++++|++|++||+
T Consensus       285 ~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~--l~l~~~--h~~~V~~v~~~~~~lvsgs~d~~v~VW~~  358 (537)
T KOG0274|consen  285 HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGAC--LNLLRG--HTGPVNCVQLDEPLLVSGSYDGTVKVWDP  358 (537)
T ss_pred             EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcce--EEEecc--ccccEEEEEecCCEEEEEecCceEEEEEh
Confidence            5678999999999875  46788999999999999985432  222322  55678888888999999999999999999


Q ss_pred             CCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcC
Q 019384          174 RNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP  253 (342)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  253 (342)
                      ++++.....  ..+...+.++.+... ..++.++.|..+  ++||+.... .....+.+|...         |+.+.+  
T Consensus       359 ~~~~cl~sl--~gH~~~V~sl~~~~~-~~~~Sgs~D~~I--kvWdl~~~~-~c~~tl~~h~~~---------v~~l~~--  421 (537)
T KOG0274|consen  359 RTGKCLKSL--SGHTGRVYSLIVDSE-NRLLSGSLDTTI--KVWDLRTKR-KCIHTLQGHTSL---------VSSLLL--  421 (537)
T ss_pred             hhceeeeee--cCCcceEEEEEecCc-ceEEeeeeccce--EeecCCchh-hhhhhhcCCccc---------cccccc--
Confidence            976543222  234455677655544 778999999866  459986542 334555666542         344433  


Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeccCC-CCcceEEEEECCCCCEEEEEEe
Q 019384          254 IYGTFATGGCDGFVNVWDGNNKKRLYQYSK-YPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       254 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~-~~~~V~~v~~spdg~~las~s~  305 (342)
                      .+++|++++.|++|++||.+++++++.+++ |...|.++++. +. .+++++.
T Consensus       422 ~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~-~il~s~~  472 (537)
T KOG0274|consen  422 RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KE-EILCSSD  472 (537)
T ss_pred             ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-cc-eEEEEec
Confidence            578899999999999999999999999988 67889999998 33 3444443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=8.9e-25  Score=193.15  Aligned_cols=290  Identities=14%  Similarity=0.146  Sum_probs=206.6

Q ss_pred             CCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc--eeeee----eecCCceEEEEEeC-CCCeEEEecC
Q 019384            8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN--VLRGE----FMHGGPVLDCCFHD-DSSGFSASAD   80 (342)
Q Consensus         8 ~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~--~~~~~----~~h~~~V~~~~~~~-~~~~~s~s~D   80 (342)
                      |..-+--...|+..|.++++.|.|-+|+|||.|-+|++||...-  ..+..    ......|.++.|++ +++++..+..
T Consensus       156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~  235 (641)
T KOG0772|consen  156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS  235 (641)
T ss_pred             CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence            33333334566789999999999999999999999999998652  12211    12345789999984 5566677777


Q ss_pred             CcEEEEEeccCcee-------------ecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeec---
Q 019384           81 HTVRRLVFSHGKED-------------ILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTY---  143 (342)
Q Consensus        81 ~~i~~w~~~~~~~~-------------~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~---  143 (342)
                      .-.+++|-+.....             ...||...++|.+|+|+. +.|+|++.|+++||||+.....+.+.+....   
T Consensus       236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g  315 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG  315 (641)
T ss_pred             cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence            77788876544311             235899999999999976 5789999999999999975443322221111   


Q ss_pred             -CCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCC-ccccc-ccccc-eeeEEEEEeeCCceEEEEccCCeEEEEEeec
Q 019384          144 -PQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQ-PEQRR-ESSLK-YQTRCVRCYPNGTGYALSSVEGRVAMEFFDL  219 (342)
Q Consensus       144 -~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~-~~~~~-~~~~~-~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~  219 (342)
                       ......+.++.++..|++|..||.|.+||.+.... +.... ..+.+ ..++|++|+.+|+.+++-+.|+++  ++||+
T Consensus       316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL--KvWDL  393 (641)
T KOG0772|consen  316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL--KVWDL  393 (641)
T ss_pred             cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce--eeeec
Confidence             12234455666778899999999999999865322 11111 11222 358999999999999999998875  56999


Q ss_pred             hhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEec------CCCeEEEEeCCCceeeeccCCCCcceEEEEE
Q 019384          220 SEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGG------CDGFVNVWDGNNKKRLYQYSKYPTSIAALSF  293 (342)
Q Consensus       220 ~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs------~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~  293 (342)
                      +........ .       .+....++-..|+|||+.+.|++|.      .-|++.+||..+...+..+.-....|..+.|
T Consensus       394 rq~kkpL~~-~-------tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~W  465 (641)
T KOG0772|consen  394 RQFKKPLNV-R-------TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLW  465 (641)
T ss_pred             cccccchhh-h-------cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEee
Confidence            765443211 0       1112234567799999999999985      3668999999998888777656788999999


Q ss_pred             CCCCCEEEEEEecc
Q 019384          294 SRDGRLLAVASSYT  307 (342)
Q Consensus       294 spdg~~las~s~~~  307 (342)
                      .|-=+.|.+|++++
T Consensus       466 hpkLNQi~~gsgdG  479 (641)
T KOG0772|consen  466 HPKLNQIFAGSGDG  479 (641)
T ss_pred             cchhhheeeecCCC
Confidence            99877777788754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=9.8e-25  Score=198.09  Aligned_cols=243  Identities=16%  Similarity=0.177  Sum_probs=186.6

Q ss_pred             cCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeee-cCCceEEEEEeCCCCeEEEecCCcEEEEEecc
Q 019384           13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFM-HGGPVLDCCFHDDSSGFSASADHTVRRLVFSH   90 (342)
Q Consensus        13 ~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~-h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~   90 (342)
                      +|+..+.+.|++|.|+++|++||.|-.+|+|.|||....+ ...... |...|-+++|. ...+.+|+.|+.|..+|+..
T Consensus       211 ~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~  289 (484)
T KOG0305|consen  211 ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDVRI  289 (484)
T ss_pred             EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc-CceEEEecCCCcEEEEEEec
Confidence            4555558999999999999999999999999999997765 344445 89999999997 44567899999999999988


Q ss_pred             Cce--eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---CCeEEEE--E
Q 019384           91 GKE--DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---GNRLVVA--T  163 (342)
Q Consensus        91 ~~~--~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~~~~~~~--s  163 (342)
                      ...  .++.+|...|..+.|++|+.+||+|+.|+.+.|||......  ...+..  +...|.++++.   .+.||+|  +
T Consensus       290 ~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p--~~~~~~--H~aAVKA~awcP~q~~lLAsGGGs  365 (484)
T KOG0305|consen  290 SQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP--KFTFTE--HTAAVKALAWCPWQSGLLATGGGS  365 (484)
T ss_pred             chhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc--cEEEec--cceeeeEeeeCCCccCceEEcCCC
Confidence            762  35789999999999999999999999999999999843222  222333  33444444444   4567775  6


Q ss_pred             cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384          164 AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV  243 (342)
Q Consensus       164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~  243 (342)
                      +|++|++||..++....   ......++..+.|++..+.++++-......|.+|+...  ..+...+.+|..        
T Consensus       366 ~D~~i~fwn~~~g~~i~---~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--~~~~~~l~gH~~--------  432 (484)
T KOG0305|consen  366 ADRCIKFWNTNTGARID---SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS--MKLVAELLGHTS--------  432 (484)
T ss_pred             cccEEEEEEcCCCcEec---ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--cceeeeecCCcc--------
Confidence            77899999998764322   22344678999999998888777554444566788754  233344556654        


Q ss_pred             eeeeEEEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384          244 YPVNAIAFHPIYGTFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       244 ~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~  274 (342)
                       .|..++++|||..+++|+.|.++++|++-+
T Consensus       433 -RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  433 -RVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             -eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence             699999999999999999999999998765

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.9e-24  Score=173.99  Aligned_cols=248  Identities=15%  Similarity=0.148  Sum_probs=185.3

Q ss_pred             eeeeeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCC
Q 019384           53 LRGEFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR  130 (342)
Q Consensus        53 ~~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~  130 (342)
                      +.....|+++|.++.|. +++..++|+.|.++++|+.-.+. ...+.+|...|..++.+.|+..|++|+.|+.|.+||+.
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence            34445689999999998 55566899999999999987776 45788999999999999999999999999999999998


Q ss_pred             CCCCcceeeeeecCCCCcEEEEecc--CCeEEEEEcCCeEEEEeCCCCCC-cccccccccceeeEEEEEeeCCceEEEEc
Q 019384          131 GASGQERTLVGTYPQPERVYSLSLV--GNRLVVATAGRHVNVYDLRNMSQ-PEQRRESSLKYQTRCVRCYPNGTGYALSS  207 (342)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~s  207 (342)
                      ++...  ..+..+  ...+..+.++  ...+++++-|..+++||-|..+. |++..... ...+.++  .-.+..++.++
T Consensus        90 TGkv~--Rr~rgH--~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea-~D~V~Si--~v~~heIvaGS  162 (307)
T KOG0316|consen   90 TGKVD--RRFRGH--LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA-KDGVSSI--DVAEHEIVAGS  162 (307)
T ss_pred             cCeee--eecccc--cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh-cCceeEE--EecccEEEeec
Confidence            75432  233333  3445555554  45789999999999999987543 22322211 1123333  33445688999


Q ss_pred             cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcc
Q 019384          208 VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTS  287 (342)
Q Consensus       208 ~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~  287 (342)
                      .||+++  .||++.......             ....||++++|+++++.+..++.|+++|+-|-++++.++.+++|.+.
T Consensus       163 ~DGtvR--tydiR~G~l~sD-------------y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~  227 (307)
T KOG0316|consen  163 VDGTVR--TYDIRKGTLSSD-------------YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM  227 (307)
T ss_pred             cCCcEE--EEEeecceeehh-------------hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc
Confidence            999875  488864422111             12248999999999999999999999999999999999999999874


Q ss_pred             e--EEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccCCccccC
Q 019384          288 I--AALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIEVKPK  333 (342)
Q Consensus       288 V--~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (342)
                      -  ...+++....++++||.++           .+++|++.+..+.+|
T Consensus       228 eykldc~l~qsdthV~sgSEDG-----------~Vy~wdLvd~~~~sk  264 (307)
T KOG0316|consen  228 EYKLDCCLNQSDTHVFSGSEDG-----------KVYFWDLVDETQISK  264 (307)
T ss_pred             eeeeeeeecccceeEEeccCCc-----------eEEEEEeccceeeee
Confidence            4  5667788888899888766           477777765544444

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.93  E-value=1.6e-23  Score=182.64  Aligned_cols=237  Identities=23%  Similarity=0.319  Sum_probs=177.0

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCeEEEe-cCCcEEEEEeccCc-
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSGFSAS-ADHTVRRLVFSHGK-   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~~s~s-~D~~i~~w~~~~~~-   92 (342)
                      ..|...+..+.|++++++|++++.||.|++||+.+++ ......|...|.++.|.+++.++.++ .|+.+.+|++.+.+ 
T Consensus        48 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  127 (289)
T cd00200          48 KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC  127 (289)
T ss_pred             ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE
Confidence            4677888999999999999999999999999998754 34445688899999999777666555 49999999998655 


Q ss_pred             eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEE
Q 019384           93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNV  170 (342)
Q Consensus        93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~i  170 (342)
                      ...+..|...|.+++|+|++.++++++.|+.|++||+++....  ..+..+  ...+.++.+  +++.+++++.++.+++
T Consensus       128 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~--~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~i~i  203 (289)
T cd00200         128 LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV--ATLTGH--TGEVNSVAFSPDGEKLLSSSSDGTIKL  203 (289)
T ss_pred             EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc--eeEecC--ccccceEEECCCcCEEEEecCCCcEEE
Confidence            3456679999999999999888888888999999998753321  222222  223444444  4558888998999999


Q ss_pred             EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384          171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA  250 (342)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  250 (342)
                      ||++........  ......+.++.++|++..+++++.++.+  ++||.......  ..+..|.         ..|.+++
T Consensus       204 ~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~i--~i~~~~~~~~~--~~~~~~~---------~~i~~~~  268 (289)
T cd00200         204 WDLSTGKCLGTL--RGHENGVNSVAFSPDGYLLASGSEDGTI--RVWDLRTGECV--QTLSGHT---------NSVTSLA  268 (289)
T ss_pred             EECCCCceecch--hhcCCceEEEEEcCCCcEEEEEcCCCcE--EEEEcCCceeE--EEccccC---------CcEEEEE
Confidence            999875332211  1223357788999998777777767765  56887543221  2222332         2589999


Q ss_pred             EcCCCCeEEEecCCCeEEEEe
Q 019384          251 FHPIYGTFATGGCDGFVNVWD  271 (342)
Q Consensus       251 ~sp~~~~l~sgs~Dg~I~iWd  271 (342)
                      |+|++..|++++.||.|++|+
T Consensus       269 ~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         269 WSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             ECCCCCEEEEecCCCeEEecC
Confidence            999999999999999999996

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=8.8e-24  Score=177.01  Aligned_cols=279  Identities=18%  Similarity=0.201  Sum_probs=188.0

Q ss_pred             CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-----eeeeeecCCceEEEEEeCCCC-e-EEEecCCcEEEE
Q 019384           14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-----LRGEFMHGGPVLDCCFHDDSS-G-FSASADHTVRRL   86 (342)
Q Consensus        14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-----~~~~~~h~~~V~~~~~~~~~~-~-~s~s~D~~i~~w   86 (342)
                      ...+|++.|++++||+||.+|||++.|++||||++..-.     .+.....-+..+.+.|.||-+ + +++-...++++|
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY  160 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence            346899999999999999999999999999999997532     111112234568899987765 3 344455678888


Q ss_pred             EeccCcee-------------ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEe
Q 019384           87 VFSHGKED-------------ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLS  153 (342)
Q Consensus        87 ~~~~~~~~-------------~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s  153 (342)
                      -+...+..             .-..|.-.|..+-.-..+.+|+|++.|.+|.|||++.   +....+........-..++
T Consensus       161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG---q~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG---QLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC---ceeeeeccccccccceeeC
Confidence            76544321             1134555566665555678899999999999999872   1112222222334456789


Q ss_pred             ccCCeEEEEEcCCeEEEEeCCC---CCCcccccc---cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhh----
Q 019384          154 LVGNRLVVATAGRHVNVYDLRN---MSQPEQRRE---SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAS----  223 (342)
Q Consensus       154 ~~~~~~~~~s~d~~v~iwd~~~---~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~----  223 (342)
                      ++|..+++++-.-+|++|.+-=   +......+.   ..+...+..++|+++....++.|.||+.++  ||+.-..    
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wri--wdtdVrY~~~q  315 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRI--WDTDVRYEAGQ  315 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEE--eeccceEecCC
Confidence            9999999998888999998632   211111111   122233567789999999999999998765  6653211    


Q ss_pred             h---cccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC-CCCcceEEEEECCCCCE
Q 019384          224 Q---AKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS-KYPTSIAALSFSRDGRL  299 (342)
Q Consensus       224 ~---~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~V~~v~~spdg~~  299 (342)
                      .   .+......|..   +.   .|+ .++.+|.|+.||.+. ..+++++..++++..-.++ -|...|.+++|+|||++
T Consensus       316 Dpk~Lk~g~~pl~aa---g~---~p~-RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~  387 (420)
T KOG2096|consen  316 DPKILKEGSAPLHAA---GS---EPV-RLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKY  387 (420)
T ss_pred             CchHhhcCCcchhhc---CC---Cce-EEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcE
Confidence            1   11111111111   11   134 689999999887653 4479999998887665554 58889999999999999


Q ss_pred             EEEEEe
Q 019384          300 LAVASS  305 (342)
Q Consensus       300 las~s~  305 (342)
                      +|+++.
T Consensus       388 ~atcGd  393 (420)
T KOG2096|consen  388 IATCGD  393 (420)
T ss_pred             Eeeecc
Confidence            998874

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=1.6e-25  Score=187.91  Aligned_cols=237  Identities=19%  Similarity=0.227  Sum_probs=181.6

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee--eecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCce-
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE--FMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKE-   93 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~--~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~-   93 (342)
                      +.+.|.|++||.|...||||+.||.|+||.+.++.++..  .+|...|+|+.|+ ++.++++++.|.++++.-+..++. 
T Consensus       262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L  341 (508)
T KOG0275|consen  262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL  341 (508)
T ss_pred             cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhH
Confidence            468999999999999999999999999999998865433  4799999999999 556778999999999999998884 


Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC---cEEEEeccCCeEEEEEcCCeEEE
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE---RVYSLSLVGNRLVVATAGRHVNV  170 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~---~v~~~s~~~~~~~~~s~d~~v~i  170 (342)
                      .-+.+|+..|+...|+++|..++++|.||+|++|+..+..+.  ..+.......   .+.-+..++..+++|...+++.+
T Consensus       342 KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~--~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~i  419 (508)
T KOG0275|consen  342 KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECL--STFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYI  419 (508)
T ss_pred             HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhh--hhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEE
Confidence            468999999999999999999999999999999998764431  1121111112   23334446778999999999999


Q ss_pred             EeCCCCCCccccccc--ccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384          171 YDLRNMSQPEQRRES--SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA  248 (342)
Q Consensus       171 wd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  248 (342)
                      .++...  .......  ...+...+...+|.|..+.+.+.|+-.  +.|.....  .....+..|.+.         |-.
T Consensus       420 mn~qGQ--vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vl--YCF~~~sG--~LE~tl~VhEkd---------vIG  484 (508)
T KOG0275|consen  420 MNMQGQ--VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVL--YCFSVLSG--KLERTLPVHEKD---------VIG  484 (508)
T ss_pred             Eeccce--EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEE--EEEEeecC--ceeeeeeccccc---------ccc
Confidence            988642  1121111  112344556689999999998888854  55666433  344556677764         556


Q ss_pred             EEEcCCCCeEEEecCCCeEEEEe
Q 019384          249 IAFHPIYGTFATGGCDGFVNVWD  271 (342)
Q Consensus       249 v~~sp~~~~l~sgs~Dg~I~iWd  271 (342)
                      ++.||..+.||+-++||.+++|.
T Consensus       485 l~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  485 LTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccCcccchhhhhcccchhhhcC
Confidence            88899999999999999999994

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.9e-23  Score=195.06  Aligned_cols=276  Identities=17%  Similarity=0.252  Sum_probs=188.6

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~   93 (342)
                      .+|.+.|..|+|.|.+.+++|||.|-+|+||+.+..++ .++.+|-+-|..+.|++.-- +++||.|++|++|++.++++
T Consensus        48 deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~  127 (1202)
T KOG0292|consen   48 DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC  127 (1202)
T ss_pred             hccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce
Confidence            37899999999999999999999999999999988764 46679999999999986554 46999999999999999985


Q ss_pred             -eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCccee----------------eee-------e-c-CCCC
Q 019384           94 -DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERT----------------LVG-------T-Y-PQPE  147 (342)
Q Consensus        94 -~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~----------------~~~-------~-~-~~~~  147 (342)
                       -.+.||.-.|.|..|+|..++++|+|.|.+||+||+..-.+....                .++       . . .|..
T Consensus       128 iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR  207 (1202)
T KOG0292|consen  128 IAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR  207 (1202)
T ss_pred             EEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc
Confidence             468999999999999999999999999999999997521110000                000       0 0 1112


Q ss_pred             cEEEEeccC--CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhc
Q 019384          148 RVYSLSLVG--NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQA  225 (342)
Q Consensus       148 ~v~~~s~~~--~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~  225 (342)
                      .|...++.+  ..|++|+.|+.|++|.+...+.=..-.--.+-.++.|+.|+|....+++.+.|+.+++  ||....+..
T Consensus       208 GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV--wDm~kRt~v  285 (1202)
T KOG0292|consen  208 GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV--WDMTKRTSV  285 (1202)
T ss_pred             ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEE--Eecccccce
Confidence            233445555  3788999999999999865432111011122345788999999999999999998754  887433222


Q ss_pred             ccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecC--------------------------CCeEEEEeCCCcee--
Q 019384          226 KKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGC--------------------------DGFVNVWDGNNKKR--  277 (342)
Q Consensus       226 ~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~--------------------------Dg~I~iWd~~~~~~--  277 (342)
                      ..+  +...         .....++-||..+++|.|-.                          |..|+-+|..+.+.  
T Consensus       286 ~tf--rren---------dRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~  354 (1202)
T KOG0292|consen  286 QTF--RREN---------DRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTA  354 (1202)
T ss_pred             eee--eccC---------CeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccce
Confidence            211  1000         13455666665555544432                          33444444433221  


Q ss_pred             eeccCC---CCcceEEEEECCCCCEEEEEE
Q 019384          278 LYQYSK---YPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       278 ~~~~~~---~~~~V~~v~~spdg~~las~s  304 (342)
                      +.+++.   ...++.+|.|+|-..-+..++
T Consensus       355 v~~lr~~g~~~~~~~smsYNpae~~vlics  384 (1202)
T KOG0292|consen  355 VASLRRPGTLWQPPRSLSYNPAENAVLICS  384 (1202)
T ss_pred             eEeccCCCcccCCcceeeeccccCeEEEEe
Confidence            122221   125788999999877666665

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=4.4e-24  Score=186.28  Aligned_cols=234  Identities=17%  Similarity=0.249  Sum_probs=177.0

Q ss_pred             CCCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEECCCc----ee-------eeeeecCCceEEEEEe--CCCCeEEEecCC
Q 019384           16 NPPSDGISNLRFSNHS-DHLLVSSWDKSVRLYDASAN----VL-------RGEFMHGGPVLDCCFH--DDSSGFSASADH   81 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~-~~l~s~s~Dgti~vwd~~~~----~~-------~~~~~h~~~V~~~~~~--~~~~~~s~s~D~   81 (342)
                      -.|.+.|+.++.-|+. ..+||.+..+.|.|||....    +.       +.+.+|++.-++++|+  ..+.+++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            3678899999999965 55677788899999997531    11       2566899988899997  466789999999


Q ss_pred             cEEEEEeccCce--------eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE
Q 019384           82 TVRRLVFSHGKE--------DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL  152 (342)
Q Consensus        82 ~i~~w~~~~~~~--------~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~  152 (342)
                      ++++||+.....        ..+.+|+..|..++|++.. .+|++++.|+.+.|||+|+.+........  .+...+.++
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~--ah~~~vn~~  278 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK--AHSAEVNCV  278 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc--ccCCceeEE
Confidence            999999876442        2567999999999999954 67899999999999999963222222222  344556666


Q ss_pred             eccC---CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccce
Q 019384          153 SLVG---NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA  229 (342)
Q Consensus       153 s~~~---~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~  229 (342)
                      .+++   ..||++++|++|.+||+|+...+.                                               +.
T Consensus       279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~l-----------------------------------------------h~  311 (422)
T KOG0264|consen  279 AFNPFNEFILATGSADKTVALWDLRNLNKPL-----------------------------------------------HT  311 (422)
T ss_pred             EeCCCCCceEEeccCCCcEEEeechhcccCc-----------------------------------------------ee
Confidence            6653   478999999999999999863210                                               11


Q ss_pred             eeeEEecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCC--------------ceeeeccCCCCcceEEEEEC
Q 019384          230 FKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNN--------------KKRLYQYSKYPTSIAALSFS  294 (342)
Q Consensus       230 ~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~--------------~~~~~~~~~~~~~V~~v~~s  294 (342)
                      +..|..         .|.+|.|+|... .|||++.|+.+.|||+..              .+++...-||+..|..++|+
T Consensus       312 ~e~H~d---------ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWn  382 (422)
T KOG0264|consen  312 FEGHED---------EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWN  382 (422)
T ss_pred             ccCCCc---------ceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCC
Confidence            223332         488899999865 679999999999999752              13456778999999999999


Q ss_pred             CCCCEEEEEEecc
Q 019384          295 RDGRLLAVASSYT  307 (342)
Q Consensus       295 pdg~~las~s~~~  307 (342)
                      |...+++++.+++
T Consensus       383 p~ePW~I~SvaeD  395 (422)
T KOG0264|consen  383 PNEPWTIASVAED  395 (422)
T ss_pred             CCCCeEEEEecCC
Confidence            9999877666555

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.7e-24  Score=176.04  Aligned_cols=225  Identities=17%  Similarity=0.321  Sum_probs=159.4

Q ss_pred             EEEEEcC--CCCeEE-EE-----eCCCcEEEEECCCceeee---eeecCCceEEEEEe--CCCCeEEEecCCcEEEEEec
Q 019384           23 SNLRFSN--HSDHLL-VS-----SWDKSVRLYDASANVLRG---EFMHGGPVLDCCFH--DDSSGFSASADHTVRRLVFS   89 (342)
Q Consensus        23 ~~l~fs~--~~~~l~-s~-----s~Dgti~vwd~~~~~~~~---~~~h~~~V~~~~~~--~~~~~~s~s~D~~i~~w~~~   89 (342)
                      +++.|||  ++++.+ ++     ...|++.|-++..+.-+.   .+.-++.+.+++|+  ...++++|+.||++++||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            6899999  343332 22     245889999986443222   23457889999998  45678899999999999965


Q ss_pred             cCc--eeecccCCcceeEEEEeCC-CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---CCeEEEEE
Q 019384           90 HGK--EDILGKHDAPVRCIEYSYA-AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---GNRLVVAT  163 (342)
Q Consensus        90 ~~~--~~~~~~h~~~V~~~~~~~~-~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~~~~~~~s  163 (342)
                      ...  ...+..|...|.+++|++. +..++++|+|++||+||...+..  .+.+.  .+...|....++   ++.+++++
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S--v~Tf~--gh~~~Iy~a~~sp~~~nlfas~S  167 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS--VQTFN--GHNSCIYQAAFSPHIPNLFASAS  167 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc--eEeec--CCccEEEEEecCCCCCCeEEEcc
Confidence            443  3467899999999999984 46788999999999999753221  12222  234455555443   57899999


Q ss_pred             cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384          164 AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV  243 (342)
Q Consensus       164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~  243 (342)
                      .|+++++||++.....                       +                         .+..|..        
T Consensus       168 gd~~l~lwdvr~~gk~-----------------------~-------------------------~i~ah~~--------  191 (311)
T KOG0277|consen  168 GDGTLRLWDVRSPGKF-----------------------M-------------------------SIEAHNS--------  191 (311)
T ss_pred             CCceEEEEEecCCCce-----------------------e-------------------------EEEeccc--------
Confidence            9999999998753110                       0                         0112221        


Q ss_pred             eeeeEEEEcCC-CCeEEEecCCCeEEEEeCCCce-eeeccCCCCcceEEEEECCCCCEEEEEEeccc
Q 019384          244 YPVNAIAFHPI-YGTFATGGCDGFVNVWDGNNKK-RLYQYSKYPTSIAALSFSRDGRLLAVASSYTF  308 (342)
Q Consensus       244 ~~v~~v~~sp~-~~~l~sgs~Dg~I~iWd~~~~~-~~~~~~~~~~~V~~v~~spdg~~las~s~~~~  308 (342)
                       .|.++-|+.- ..+|+||+.|+.||+||+++.+ .+..+.+|.-.|..+.|||-..-|++++++|+
T Consensus       192 -Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm  257 (311)
T KOG0277|consen  192 -EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDM  257 (311)
T ss_pred             -eeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccc
Confidence             2667777654 4578999999999999998754 57888999999999999998875555555543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=1.6e-23  Score=181.68  Aligned_cols=277  Identities=19%  Similarity=0.211  Sum_probs=217.0

Q ss_pred             CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCC-CeEEEecCCcEEEEEeccC
Q 019384           14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDS-SGFSASADHTVRRLVFSHG   91 (342)
Q Consensus        14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~   91 (342)
                      |++-...+|.++...+....++||+.|.++.++|...+.++ ...+|...|+.+.|+++. ..++++.|..|++|.....
T Consensus       214 LH~t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~  293 (506)
T KOG0289|consen  214 LHSTSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS  293 (506)
T ss_pred             eeccCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc
Confidence            44444568899988888889999999999999999876544 456899999999998654 5679999999999998766


Q ss_pred             ce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-CCCcEEEEec--cCCeEEEEEcCCe
Q 019384           92 KE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP-QPERVYSLSL--VGNRLVVATAGRH  167 (342)
Q Consensus        92 ~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~v~~~s~--~~~~~~~~s~d~~  167 (342)
                      .. .....|..+|+.+..+|.|++|+++|.|+++...|++++...   ...... ....+.+..+  ++..+.+++.|+.
T Consensus       294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~l---t~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~  370 (506)
T KOG0289|consen  294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQL---TVVSDETSDVEYTSAAFHPDGLIFGTGTPDGV  370 (506)
T ss_pred             cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEE---EEEeeccccceeEEeeEcCCceEEeccCCCce
Confidence            54 356789999999999999999999999999999999875442   122221 2233444444  5557788999999


Q ss_pred             EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384          168 VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN  247 (342)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  247 (342)
                      |++||+.+.... .++ ..+...+..++|+.+|.++++++.|+.+  ++||++.....+.+.+...          ++|+
T Consensus       371 vkiwdlks~~~~-a~F-pght~~vk~i~FsENGY~Lat~add~~V--~lwDLRKl~n~kt~~l~~~----------~~v~  436 (506)
T KOG0289|consen  371 VKIWDLKSQTNV-AKF-PGHTGPVKAISFSENGYWLATAADDGSV--KLWDLRKLKNFKTIQLDEK----------KEVN  436 (506)
T ss_pred             EEEEEcCCcccc-ccC-CCCCCceeEEEeccCceEEEEEecCCeE--EEEEehhhcccceeecccc----------ccce
Confidence            999999886532 222 2355678999999999999999999875  5699986655444443321          2589


Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEeCC--CceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          248 AIAFHPIYGTFATGGCDGFVNVWDGN--NKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       248 ~v~~sp~~~~l~sgs~Dg~I~iWd~~--~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      ++.|.+.|.+|+.++.|=+|++++-.  +..++..+..|.+..+++.|.-..++++++|.+.
T Consensus       437 s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~  498 (506)
T KOG0289|consen  437 SLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDA  498 (506)
T ss_pred             eEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchh
Confidence            99999999999999988888888744  3456777888888999999999999999998765

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.6e-23  Score=188.86  Aligned_cols=274  Identities=16%  Similarity=0.159  Sum_probs=201.4

Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee-cCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc-eeeccc-C
Q 019384           24 NLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK-EDILGK-H   99 (342)
Q Consensus        24 ~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~-h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~-~~~~~~-h   99 (342)
                      -+.|++ .+.||.| ....|.+|+..++....+.. +...|+++.|++++.. +.|..+|.+.+||....+ ...+.+ |
T Consensus       182 lldWss-~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h  259 (484)
T KOG0305|consen  182 LLDWSS-ANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH  259 (484)
T ss_pred             Hhhccc-CCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence            366773 3455544 45579999998877544332 3789999999976664 578899999999987765 455666 9


Q ss_pred             CcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCc
Q 019384          100 DAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQP  179 (342)
Q Consensus       100 ~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~  179 (342)
                      ...|-+++|.  ...+.+|+.|+.|..+|++....... .+..|..+.+...++.++..+++++.|+.+.|||.......
T Consensus       260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~  336 (484)
T KOG0305|consen  260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK  336 (484)
T ss_pred             CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence            9999999997  57899999999999999986443222 23333333334445556779999999999999999654332


Q ss_pred             ccccccccceeeEEEEEeeC-CceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeE
Q 019384          180 EQRRESSLKYQTRCVRCYPN-GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTF  258 (342)
Q Consensus       180 ~~~~~~~~~~~~~~v~~~~~-~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l  258 (342)
                      ...  ..+...+..++|+|- ...+|+|....+..|+|||..........            +-...|.+|.|++..+.|
T Consensus       337 ~~~--~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v------------dtgsQVcsL~Wsk~~kEi  402 (484)
T KOG0305|consen  337 FTF--TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV------------DTGSQVCSLIWSKKYKEL  402 (484)
T ss_pred             EEE--eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc------------ccCCceeeEEEcCCCCEE
Confidence            222  234456778889985 45577877766777899998644322211            111258999999998777


Q ss_pred             EE--ecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          259 AT--GGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       259 ~s--gs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      ++  |-.+..|.||+..+.+.+..+.+|..+|..+++||||..+++|+++.           .+.+|++-+
T Consensus       403 ~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE-----------Tlrfw~~f~  462 (484)
T KOG0305|consen  403 LSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADE-----------TLRFWNLFD  462 (484)
T ss_pred             EEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccC-----------cEEeccccC
Confidence            66  44677999999999999999999999999999999999999999876           466666543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.3e-24  Score=196.89  Aligned_cols=231  Identities=20%  Similarity=0.304  Sum_probs=170.2

Q ss_pred             CCCeE---EEEEcC-CCCeEEEEeCCCcEEEEECCC--ce-----eeeeeecCCceEEEEEe-CCCCeEEEecCCcEEEE
Q 019384           19 SDGIS---NLRFSN-HSDHLLVSSWDKSVRLYDASA--NV-----LRGEFMHGGPVLDCCFH-DDSSGFSASADHTVRRL   86 (342)
Q Consensus        19 ~~~V~---~l~fs~-~~~~l~s~s~Dgti~vwd~~~--~~-----~~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w   86 (342)
                      ..+|.   ++..+. .+++|.|||.||.|++|+...  ++     +..+..|.+-|+++... .+..+++||.|-+|++|
T Consensus        21 ~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W  100 (735)
T KOG0308|consen   21 RNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVW  100 (735)
T ss_pred             cccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEe
Confidence            44555   566665 456799999999999999853  21     33344688889988886 45578999999999999


Q ss_pred             EeccCc---eeecccCCcceeEEEE-eCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeec----------CCCCcEEEE
Q 019384           87 VFSHGK---EDILGKHDAPVRCIEY-SYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTY----------PQPERVYSL  152 (342)
Q Consensus        87 ~~~~~~---~~~~~~h~~~V~~~~~-~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~----------~~~~~v~~~  152 (342)
                      +.....   ..+++.|++.|.|+++ -++..+++||+.|+.|.+||++++...   .+..+          .....++++
T Consensus       101 ~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~---l~~s~n~~t~~sl~sG~k~siYSL  177 (735)
T KOG0308|consen  101 NAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT---LVASFNNVTVNSLGSGPKDSIYSL  177 (735)
T ss_pred             ecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchh---hhhhccccccccCCCCCccceeee
Confidence            987664   3468899999999999 677788999999999999999864321   11110          011123333


Q ss_pred             eccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeee
Q 019384          153 SLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKC  232 (342)
Q Consensus       153 s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~  232 (342)
                      +.                                          .+.+..++.|+.++.+  ++||.+..  .+...+++
T Consensus       178 A~------------------------------------------N~t~t~ivsGgtek~l--r~wDprt~--~kimkLrG  211 (735)
T KOG0308|consen  178 AM------------------------------------------NQTGTIIVSGGTEKDL--RLWDPRTC--KKIMKLRG  211 (735)
T ss_pred             ec------------------------------------------CCcceEEEecCcccce--EEeccccc--cceeeeec
Confidence            33                                          2333334444444433  34555432  23344566


Q ss_pred             EEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          233 HRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       233 h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      |..         .|.++..++||..++++|.||+|++||+...++++++.-|...||++.-+|+=.++-+|++++
T Consensus       212 HTd---------NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~  277 (735)
T KOG0308|consen  212 HTD---------NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDG  277 (735)
T ss_pred             ccc---------ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCC
Confidence            664         589999999999999999999999999999999999999999999999999999999998864

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=6.2e-24  Score=177.34  Aligned_cols=280  Identities=16%  Similarity=0.150  Sum_probs=199.2

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC-------------------ceeeeeeecCCceEEEEEeCCCCe-EE
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA-------------------NVLRGEFMHGGPVLDCCFHDDSSG-FS   76 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~-------------------~~~~~~~~h~~~V~~~~~~~~~~~-~s   76 (342)
                      .|...+.+.+||+||.++||||.|..|+|.|+..                   ..+++++.|.++|+++.|+|..++ ++
T Consensus       110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS  189 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS  189 (430)
T ss_pred             ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence            5678899999999999999999999999999751                   125667789999999999987765 69


Q ss_pred             EecCCcEEEEEeccCcee---ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEe
Q 019384           77 ASADHTVRRLVFSHGKED---ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLS  153 (342)
Q Consensus        77 ~s~D~~i~~w~~~~~~~~---~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s  153 (342)
                      ++.|++++++|+.....+   +.-....+|+++.|+|.|++|+.|....++++||+++..+.. ......++...+.++-
T Consensus       190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv-sanPd~qht~ai~~V~  268 (430)
T KOG0640|consen  190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV-SANPDDQHTGAITQVR  268 (430)
T ss_pred             ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEee-ecCcccccccceeEEE
Confidence            999999999999765422   223445789999999999999999999999999998643211 1111223344455554


Q ss_pred             --ccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceee
Q 019384          154 --LVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFK  231 (342)
Q Consensus       154 --~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~  231 (342)
                        ..++..++++.||.|+|||=-.++........+-+..+.+..|..+++++++.+.|..+  ++|.+.+....+.|.-.
T Consensus       269 Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v--kLWEi~t~R~l~~YtGA  346 (430)
T KOG0640|consen  269 YSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV--KLWEISTGRMLKEYTGA  346 (430)
T ss_pred             ecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee--eeeeecCCceEEEEecC
Confidence              45678899999999999997665444333333334456677788999999988888866  56888766555555332


Q ss_pred             eEEecCCCCceeeeeeEEEEcCCCCeEEEec-CCCeEEEEeCCCceeeecc-CCCCcceEEEEECCCCCEEEEEEe
Q 019384          232 CHRKSEAGRDIVYPVNAIAFHPIYGTFATGG-CDGFVNVWDGNNKKRLYQY-SKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       232 ~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs-~Dg~I~iWd~~~~~~~~~~-~~~~~~V~~v~~spdg~~las~s~  305 (342)
                      +-.+..   .+   -+...|+-.-.++..-. ..+.+.-||.++...+..+ .+|.+.+..+.-||.+.-+.+||.
T Consensus       347 g~tgrq---~~---rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsd  416 (430)
T KOG0640|consen  347 GTTGRQ---KH---RTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD  416 (430)
T ss_pred             Ccccch---hh---hhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecc
Confidence            111100   00   01223444444443322 3457889999987665544 389999999999999999887764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.92  E-value=1.3e-23  Score=197.13  Aligned_cols=242  Identities=24%  Similarity=0.333  Sum_probs=182.3

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce-
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~-   93 (342)
                      .+|.++|++++|..-+++|++|+.|.|+||||+.++.+... .+|.+.|.++... ...+++||.|.+|++|+++++.. 
T Consensus       246 ~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~-~~~~~sgs~D~tVkVW~v~n~~~l  324 (537)
T KOG0274|consen  246 VGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID-PFLLVSGSRDNTVKVWDVTNGACL  324 (537)
T ss_pred             cCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc-CceEeeccCCceEEEEeccCcceE
Confidence            68999999999998889999999999999999988876654 5699888887764 33457889999999999998885 


Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC-CeEEEEEcCCeEEEEe
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG-NRLVVATAGRHVNVYD  172 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~-~~~~~~s~d~~v~iwd  172 (342)
                      .++.+|..+|+++..+  +..+++|+.|++|++||..+...  ...+.  .|...|.++.+++ +.+++++.|++|++||
T Consensus       325 ~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c--l~sl~--gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWd  398 (537)
T KOG0274|consen  325 NLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC--LKSLS--GHTGRVYSLIVDSENRLLSGSLDTTIKVWD  398 (537)
T ss_pred             EEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee--eeeec--CCcceEEEEEecCcceEEeeeeccceEeec
Confidence            4566799999999986  78999999999999999874332  22222  2567788888888 8999999999999999


Q ss_pred             CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384          173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH  252 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  252 (342)
                      +++.......... ....+..  ....++.+++++.|+.+  ++||..+....+.  +.++        +...|.++++.
T Consensus       399 l~~~~~c~~tl~~-h~~~v~~--l~~~~~~Lvs~~aD~~I--k~WD~~~~~~~~~--~~~~--------~~~~v~~l~~~  463 (537)
T KOG0274|consen  399 LRTKRKCIHTLQG-HTSLVSS--LLLRDNFLVSSSADGTI--KLWDAEEGECLRT--LEGR--------HVGGVSALALG  463 (537)
T ss_pred             CCchhhhhhhhcC-Ccccccc--cccccceeEeccccccE--EEeecccCceeee--eccC--------CcccEEEeecC
Confidence            9987211111111 1111122  23456778888999966  5599865543322  2221        11247777765


Q ss_pred             CCCCeEEEecCCCeEEEEeCCCceeeecc
Q 019384          253 PIYGTFATGGCDGFVNVWDGNNKKRLYQY  281 (342)
Q Consensus       253 p~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  281 (342)
                        ...+++++.||++++||++++++.+.+
T Consensus       464 --~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  464 --KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             --cceEEEEecCCeeEEEecccCchhhhh
Confidence              467899999999999999998887655

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.92  E-value=1.4e-23  Score=179.32  Aligned_cols=240  Identities=18%  Similarity=0.255  Sum_probs=176.8

Q ss_pred             CCCCCCCeEEEEEcCCCC---eEEEEeCCCcEEEEECCCcee-----eeeeecCCceEEEEEeCCC-CeEEEecCCcEEE
Q 019384           15 GNPPSDGISNLRFSNHSD---HLLVSSWDKSVRLYDASANVL-----RGEFMHGGPVLDCCFHDDS-SGFSASADHTVRR   85 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~~~~---~l~s~s~Dgti~vwd~~~~~~-----~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~i~~   85 (342)
                      ..+|++.|.+++|-.-..   .++++|.|.++++|....+..     ..-.+|+.+|.++...+++ .+++||.|.++.+
T Consensus       140 ~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lki  219 (423)
T KOG0313|consen  140 IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKI  219 (423)
T ss_pred             EecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeee
Confidence            368899999888765433   599999999999999876531     1123899999999987555 5579999999999


Q ss_pred             EEeccCc--------------------------eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceee
Q 019384           86 LVFSHGK--------------------------EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTL  139 (342)
Q Consensus        86 w~~~~~~--------------------------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~  139 (342)
                      |+.....                          ..++.+|+.+|.++.|++ ...++|+|+|.+|+.||+.++....  .
T Consensus       220 Ws~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~--~  296 (423)
T KOG0313|consen  220 WSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKS--T  296 (423)
T ss_pred             cccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccccee--e
Confidence            9932211                          014679999999999997 6789999999999999998754321  1


Q ss_pred             eeecCCCCcEEEEecc--CCeEEEEEcCCeEEEEeCCCCCCcc-cccccccceeeEEEEEeeCCce-EEEEccCCeEEEE
Q 019384          140 VGTYPQPERVYSLSLV--GNRLVVATAGRHVNVYDLRNMSQPE-QRRESSLKYQTRCVRCYPNGTG-YALSSVEGRVAME  215 (342)
Q Consensus       140 ~~~~~~~~~v~~~s~~--~~~~~~~s~d~~v~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~~s~~~~~~i~  215 (342)
                      +.   ......+++..  .+.+++++.|..+++||-|++.... ......++.-+..+.++|...+ +++++.|++++  
T Consensus       297 ~~---~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k--  371 (423)
T KOG0313|consen  297 LT---TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK--  371 (423)
T ss_pred             ee---cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE--
Confidence            11   12234455544  4688999999999999999874322 1111233345678899997654 67888999875  


Q ss_pred             EeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          216 FFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       216 ~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      +||.+... ...|.+.+|..         .|.++.|+. +..+++|+.|.+|+|+...
T Consensus       372 lWDvRS~k-~plydI~~h~D---------Kvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  372 LWDVRSTK-APLYDIAGHND---------KVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEEeccCC-CcceeeccCCc---------eEEEEeccC-CceEEeccCcceEEEeccc
Confidence            59998653 34577777754         488899975 6789999999999999654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.6e-23  Score=195.11  Aligned_cols=235  Identities=18%  Similarity=0.313  Sum_probs=176.9

Q ss_pred             ecCCceEEEEEeCCCC-eEEEecCCcEEEEEecc--------------------------------Cce-----------
Q 019384           58 MHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSH--------------------------------GKE-----------   93 (342)
Q Consensus        58 ~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~--------------------------------~~~-----------   93 (342)
                      .|++.|+++.|+++++ +++||.|+.|++|-+..                                ...           
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            6999999999997766 56999999999998654                                000           


Q ss_pred             ------------------eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc
Q 019384           94 ------------------DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV  155 (342)
Q Consensus        94 ------------------~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~  155 (342)
                                        ..+.||.+.|..|.|+. .++|+|+|.|+|+|||++....     ++..+.|...|+++.++
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~-----CL~~F~HndfVTcVaFn  418 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKE-----CLKVFSHNDFVTCVAFN  418 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcc-----eeeEEecCCeeEEEEec
Confidence                              01347999999999996 5699999999999999986433     35555566777777765


Q ss_pred             ---CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeee
Q 019384          156 ---GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKC  232 (342)
Q Consensus       156 ---~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~  232 (342)
                         .++|++|+-|+.||||++...+.. ..  ..+..-++.+.+.|+|++.++|+.+|.+  ++|++...+....+.+..
T Consensus       419 PvDDryFiSGSLD~KvRiWsI~d~~Vv-~W--~Dl~~lITAvcy~PdGk~avIGt~~G~C--~fY~t~~lk~~~~~~I~~  493 (712)
T KOG0283|consen  419 PVDDRYFISGSLDGKVRLWSISDKKVV-DW--NDLRDLITAVCYSPDGKGAVIGTFNGYC--RFYDTEGLKLVSDFHIRL  493 (712)
T ss_pred             ccCCCcEeecccccceEEeecCcCeeE-ee--hhhhhhheeEEeccCCceEEEEEeccEE--EEEEccCCeEEEeeeEee
Confidence               458999999999999999764322 11  1334568899999999999999999976  468876544333343433


Q ss_pred             EEecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCCceeeeccCCCCc--ceEEEEECCCCCEEEEEEec
Q 019384          233 HRKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNNKKRLYQYSKYPT--SIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       233 h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~--~V~~v~~spdg~~las~s~~  306 (342)
                      |++.  ...+. .|+.+.|.|... .|+..+.|..|||+|.++..++..|+|+.+  .=....|+.||++|+++|.+
T Consensus       494 ~~~K--k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seD  567 (712)
T KOG0283|consen  494 HNKK--KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASED  567 (712)
T ss_pred             ccCc--cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecC
Confidence            3321  11222 599999987543 577888999999999988888888887654  33688999999999999953

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=1.3e-23  Score=185.28  Aligned_cols=270  Identities=17%  Similarity=0.225  Sum_probs=205.1

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce---eeee---eecCCceEEEEEeCC-CCeEEEecCCcEEEEEec
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV---LRGE---FMHGGPVLDCCFHDD-SSGFSASADHTVRRLVFS   89 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~---~~~~---~~h~~~V~~~~~~~~-~~~~s~s~D~~i~~w~~~   89 (342)
                      .|..=|-++.+|...+++.||+.. -|||||+....   ....   ..-.+-|.+|...++ .++++|+.-.++.+||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGkg-cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCCC-eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            456677789999999999998765 59999996532   1221   123456788888755 467899998899999998


Q ss_pred             cCceee---cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC
Q 019384           90 HGKEDI---LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR  166 (342)
Q Consensus        90 ~~~~~~---~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~  166 (342)
                      ....++   +..-....+.++.+||.+..++|..||.|+|||+++.... + .+..+.....++.++.++..|-+++-|+
T Consensus       496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V-r-qfqGhtDGascIdis~dGtklWTGGlDn  573 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV-R-QFQGHTDGASCIDISKDGTKLWTGGLDN  573 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee-e-cccCCCCCceeEEecCCCceeecCCCcc
Confidence            766432   2222345678999999999999999999999999864331 1 2333444445566777788999999999


Q ss_pred             eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384          167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV  246 (342)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v  246 (342)
                      +||.||+|.+.++.   .+.+..++.++.+.|++..+++|..++.+.+  ....   ...+|.+..|..         .|
T Consensus       574 tvRcWDlregrqlq---qhdF~SQIfSLg~cP~~dWlavGMens~vev--lh~s---kp~kyqlhlheS---------cV  636 (705)
T KOG0639|consen  574 TVRCWDLREGRQLQ---QHDFSSQIFSLGYCPTGDWLAVGMENSNVEV--LHTS---KPEKYQLHLHES---------CV  636 (705)
T ss_pred             ceeehhhhhhhhhh---hhhhhhhheecccCCCccceeeecccCcEEE--EecC---Cccceeeccccc---------EE
Confidence            99999999875543   2345567888889999999999999887754  3332   334455555544         58


Q ss_pred             eEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          247 NAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       247 ~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      .++.|.+-|+++++.+.|.-+..|..--+..+.+.+ ..+.|.++.+|.|.+|+++||.+.
T Consensus       637 LSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdk  696 (705)
T KOG0639|consen  637 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDK  696 (705)
T ss_pred             EEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCc
Confidence            999999999999999999999999987777777665 457899999999999999999775

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.7e-22  Score=167.91  Aligned_cols=251  Identities=16%  Similarity=0.215  Sum_probs=180.8

Q ss_pred             eEEEEeCCCcEEEEECCCce-------------eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc-eeeccc
Q 019384           33 HLLVSSWDKSVRLYDASANV-------------LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK-EDILGK   98 (342)
Q Consensus        33 ~l~s~s~Dgti~vwd~~~~~-------------~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~-~~~~~~   98 (342)
                      .++.|++...|.=+++.-..             +.....|.++|++++.+ ...+++||.|.+|++||+.... ...+..
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs-~~~~aSGssDetI~IYDm~k~~qlg~ll~   81 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS-GPYVASGSSDETIHIYDMRKRKQLGILLS   81 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec-ceeEeccCCCCcEEEEeccchhhhcceec
Confidence            36778888888777763211             12233699999999985 3356799999999999998876 356778


Q ss_pred             CCcceeEEEEeCCCC--EEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEEEeCC
Q 019384           99 HDAPVRCIEYSYAAG--QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLR  174 (342)
Q Consensus        99 h~~~V~~~~~~~~~~--~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~  174 (342)
                      |.+.|+++.|.+...  .|++|+.||.|.+|+...=  .....+..+.+  .|..++.  ++...++.+.|+.+++||+-
T Consensus        82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W--~~~~slK~H~~--~Vt~lsiHPS~KLALsVg~D~~lr~WNLV  157 (362)
T KOG0294|consen   82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW--ELLKSLKAHKG--QVTDLSIHPSGKLALSVGGDQVLRTWNLV  157 (362)
T ss_pred             cccceEEEEecCCcchhheeeecCCCcEEEEEcCCe--EEeeeeccccc--ccceeEecCCCceEEEEcCCceeeeehhh
Confidence            999999999998764  7999999999999997531  11122333333  3555554  55677788999999999998


Q ss_pred             CCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC
Q 019384          175 NMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI  254 (342)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~  254 (342)
                      +++....   ..++.....|.|+|.|..+++...+   .|-+|.+...+..+....+            ..+.++.|- +
T Consensus       158 ~Gr~a~v---~~L~~~at~v~w~~~Gd~F~v~~~~---~i~i~q~d~A~v~~~i~~~------------~r~l~~~~l-~  218 (362)
T KOG0294|consen  158 RGRVAFV---LNLKNKATLVSWSPQGDHFVVSGRN---KIDIYQLDNASVFREIENP------------KRILCATFL-D  218 (362)
T ss_pred             cCcccee---eccCCcceeeEEcCCCCEEEEEecc---EEEEEecccHhHhhhhhcc------------ccceeeeec-C
Confidence            7754321   1233344568999999988877654   2344665443322221111            024455553 4


Q ss_pred             CCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEE--CCCCCEEEEEEecc
Q 019384          255 YGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSF--SRDGRLLAVASSYT  307 (342)
Q Consensus       255 ~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~--spdg~~las~s~~~  307 (342)
                      +..|++|+.|+.|++||.++..+...+..|..+|.++.+  .|++.||+++|+++
T Consensus       219 ~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG  273 (362)
T KOG0294|consen  219 GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG  273 (362)
T ss_pred             CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence            778999999999999999998889999999999999995  78999999999964

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.92  E-value=4.1e-24  Score=184.37  Aligned_cols=238  Identities=21%  Similarity=0.270  Sum_probs=173.2

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCC-CCeEEEecCCcEEEEEeccCcee
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDD-SSGFSASADHTVRRLVFSHGKED   94 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~-~~~~s~s~D~~i~~w~~~~~~~~   94 (342)
                      +..+.|+++.|.+++.++++++.|+++++|++....++. +.+|++.|+++.|... ..+++++.|.++++||+......
T Consensus       217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~  296 (459)
T KOG0288|consen  217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCS  296 (459)
T ss_pred             ccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhee
Confidence            345679999999999999999999999999998876554 4589999999999743 34889999999999999886643


Q ss_pred             ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCC
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLR  174 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~  174 (342)
                      .-.-....+..|..+  ...++||-.|++||.||.++.+......+   .+..+.+.+++++..+++++-|.++.+.|++
T Consensus       297 kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~---gg~vtSl~ls~~g~~lLsssRDdtl~viDlR  371 (459)
T KOG0288|consen  297 KTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPL---GGRVTSLDLSMDGLELLSSSRDDTLKVIDLR  371 (459)
T ss_pred             ccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeec---CcceeeEeeccCCeEEeeecCCCceeeeecc
Confidence            222223344444443  45689999999999999987655221111   1223344556677789999999999999999


Q ss_pred             CCCCccccccccc--ceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384          175 NMSQPEQRRESSL--KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH  252 (342)
Q Consensus       175 ~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  252 (342)
                      +............  ....+.+.|+|++.+++.|+.|+.+.  +|+....+..+......         ....|++++|+
T Consensus       372 t~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~--iW~v~tgKlE~~l~~s~---------s~~aI~s~~W~  440 (459)
T KOG0288|consen  372 TKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVY--IWSVFTGKLEKVLSLST---------SNAAITSLSWN  440 (459)
T ss_pred             cccEEEEeeccccccccccceeEECCCCceeeeccCCCcEE--EEEccCceEEEEeccCC---------CCcceEEEEEc
Confidence            8643222111111  12245678999999999999999875  58885543322221111         01159999999


Q ss_pred             CCCCeEEEecCCCeEEEE
Q 019384          253 PIYGTFATGGCDGFVNVW  270 (342)
Q Consensus       253 p~~~~l~sgs~Dg~I~iW  270 (342)
                      |.|..|++++.++.+.+|
T Consensus       441 ~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  441 PSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CCCchhhcccCCcceEec
Confidence            999999999999999999

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.1e-22  Score=168.54  Aligned_cols=254  Identities=19%  Similarity=0.243  Sum_probs=180.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCC---CeEEEecCCcEEEEEeccC
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDS---SGFSASADHTVRRLVFSHG   91 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~---~~~s~s~D~~i~~w~~~~~   91 (342)
                      ..|...|++|+-+  +.++||||.|-+|+|||..... +.....|.+.|+++.|.++.   .+++|+.||.|.+|+...-
T Consensus        40 ~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W  117 (362)
T KOG0294|consen   40 SAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW  117 (362)
T ss_pred             cccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe
Confidence            4678999999865  6899999999999999998764 33456799999999998554   6899999999999997665


Q ss_pred             c-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEE
Q 019384           92 K-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNV  170 (342)
Q Consensus        92 ~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~i  170 (342)
                      . ...+..|..+|+.++.+|.+++-++.+.|+++++||+-.+....   .-........+.++..|++++....+ .|-+
T Consensus       118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~---v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i  193 (362)
T KOG0294|consen  118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF---VLNLKNKATLVSWSPQGDHFVVSGRN-KIDI  193 (362)
T ss_pred             EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce---eeccCCcceeeEEcCCCCEEEEEecc-EEEE
Confidence            4 34678999999999999999988999999999999986544321   11222334456777778888877765 5888


Q ss_pred             EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384          171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA  250 (342)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  250 (342)
                      |.+.+......   ...+..+.|+-|. ++..+++|..++.+  .+||...  ......+.+|..         .|-.+.
T Consensus       194 ~q~d~A~v~~~---i~~~~r~l~~~~l-~~~~L~vG~d~~~i--~~~D~ds--~~~~~~~~AH~~---------RVK~i~  256 (362)
T KOG0294|consen  194 YQLDNASVFRE---IENPKRILCATFL-DGSELLVGGDNEWI--SLKDTDS--DTPLTEFLAHEN---------RVKDIA  256 (362)
T ss_pred             EecccHhHhhh---hhccccceeeeec-CCceEEEecCCceE--EEeccCC--Cccceeeecchh---------heeeeE
Confidence            98876432111   1111234444443 44567788777755  5688754  233345666765         365665


Q ss_pred             E--cCCCCeEEEecCCCeEEEEeCCCc-----eeeeccCCCCcceEEEEE
Q 019384          251 F--HPIYGTFATGGCDGFVNVWDGNNK-----KRLYQYSKYPTSIAALSF  293 (342)
Q Consensus       251 ~--sp~~~~l~sgs~Dg~I~iWd~~~~-----~~~~~~~~~~~~V~~v~~  293 (342)
                      +  .|++.+|+|+|.||.|+|||++..     +.+..+.. ..+++|+..
T Consensus       257 ~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~  305 (362)
T KOG0294|consen  257 SYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV  305 (362)
T ss_pred             EEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence            3  477889999999999999998743     23333221 445666655

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3.6e-23  Score=173.29  Aligned_cols=273  Identities=16%  Similarity=0.161  Sum_probs=194.0

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeCCCCe-EEEecCCcEEEEE------
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHDDSSG-FSASADHTVRRLV------   87 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~------   87 (342)
                      .+|.++|+.++-......+.|+|.|.|.+||.+.+++++.+ .+|.|.|+++.|++.+.+ +++|.|++..+|-      
T Consensus       145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~  224 (481)
T KOG0300|consen  145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE  224 (481)
T ss_pred             cccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence            68999999999988888999999999999999999876654 589999999999976665 6999999998886      


Q ss_pred             eccC--------c-e----------------------e----ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCC
Q 019384           88 FSHG--------K-E----------------------D----ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA  132 (342)
Q Consensus        88 ~~~~--------~-~----------------------~----~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~  132 (342)
                      ....        + +                      +    .+.+|...|.+++|-..+++++|+|||.+-.+||++++
T Consensus       225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg  304 (481)
T KOG0300|consen  225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG  304 (481)
T ss_pred             CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC
Confidence            2110        0 0                      0    24579999999999999999999999999999999865


Q ss_pred             CCcceeeeeecCCCCcEEEEeccCC--eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCC
Q 019384          133 SGQERTLVGTYPQPERVYSLSLVGN--RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEG  210 (342)
Q Consensus       133 ~~~~~~~~~~~~~~~~v~~~s~~~~--~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~  210 (342)
                      ..  ...+..+.++  ..-++..++  .+++.+.|-+.++||.+..-..... -+.+...++++.|.-+ ..+++++.|.
T Consensus       305 e~--v~~LtGHd~E--LtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~V-FQGHtdtVTS~vF~~d-d~vVSgSDDr  378 (481)
T KOG0300|consen  305 EV--VNILTGHDSE--LTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAV-FQGHTDTVTSVVFNTD-DRVVSGSDDR  378 (481)
T ss_pred             ce--eccccCcchh--ccccccCCcceEEEEeccCceeEeccchhhcceeee-ecccccceeEEEEecC-CceeecCCCc
Confidence            43  2334433332  333444443  5778899999999999853211111 1223334555555544 4588888888


Q ss_pred             eEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceee----eccCCCCc
Q 019384          211 RVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRL----YQYSKYPT  286 (342)
Q Consensus       211 ~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~----~~~~~~~~  286 (342)
                      ++  ++||++.-..+. -.++.          ..+++.++.+..++.++.--.++.|++||+......    ..-++|..
T Consensus       379 Tv--KvWdLrNMRspl-ATIRt----------dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrR  445 (481)
T KOG0300|consen  379 TV--KVWDLRNMRSPL-ATIRT----------DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRR  445 (481)
T ss_pred             eE--EEeeeccccCcc-eeeec----------CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccce
Confidence            76  569986432211 11111          126888999988889999999999999998753321    13458999


Q ss_pred             ceEEEEECCCCC--EEEEEEecc
Q 019384          287 SIAALSFSRDGR--LLAVASSYT  307 (342)
Q Consensus       287 ~V~~v~~spdg~--~las~s~~~  307 (342)
                      .|.|++|+-+.-  -|.+++.+.
T Consensus       446 MV~c~AW~eehp~cnLftcGFDR  468 (481)
T KOG0300|consen  446 MVTCCAWLEEHPACNLFTCGFDR  468 (481)
T ss_pred             eeeeeeccccCcccccccccccc
Confidence            999999976643  344554443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.2e-21  Score=157.19  Aligned_cols=273  Identities=15%  Similarity=0.172  Sum_probs=195.0

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC------c--------e--eeeeeecCCceEEEEEeCCCCeE-EEecC
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA------N--------V--LRGEFMHGGPVLDCCFHDDSSGF-SASAD   80 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~------~--------~--~~~~~~h~~~V~~~~~~~~~~~~-s~s~D   80 (342)
                      .+..|.+|+|.|.|.+.|.||..+|.||-....      +        .  +....-|.+.|+|.+|++.++++ +++.|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            357899999999999999999999999876321      0        0  22233589999999999888875 89999


Q ss_pred             CcEEEEEeccCce------eecccCCcceeEEEEeCC----CCEEEEe-eCCCcEEEEcCCCCCCcceeeeeecCCCCcE
Q 019384           81 HTVRRLVFSHGKE------DILGKHDAPVRCIEYSYA----AGQVITG-SWDKSLKCWDPRGASGQERTLVGTYPQPERV  149 (342)
Q Consensus        81 ~~i~~w~~~~~~~------~~~~~h~~~V~~~~~~~~----~~~l~sg-s~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v  149 (342)
                      .+|++.-+.....      ..+.-|.+.|+.++|-.+    +..|+++ ..|..|.+-|...+.+  ...+.  .++..+
T Consensus       111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~--~~a~s--ghtghi  186 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG--FHALS--GHTGHI  186 (350)
T ss_pred             ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc--ceeec--CCcccE
Confidence            9999987755432      245679999999999753    2345553 3445566656654433  22222  244445


Q ss_pred             EE-EeccCCeEEEEEcCCeEEEEeCCCCCCccccc----cccc-ceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhh
Q 019384          150 YS-LSLVGNRLVVATAGRHVNVYDLRNMSQPEQRR----ESSL-KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAS  223 (342)
Q Consensus       150 ~~-~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~----~~~~-~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~  223 (342)
                      .+ .++++-.++++++|++||+||+|-........    ...+ ...+..|++.|.|+.++++-.|....  +||++...
T Consensus       187 lalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~--lydirg~r  264 (350)
T KOG0641|consen  187 LALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCM--LYDIRGGR  264 (350)
T ss_pred             EEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceE--EEEeeCCc
Confidence            55 46788899999999999999998754322111    1111 12367788999999999998888764  59987654


Q ss_pred             hcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCc----eeeeccCCCCcceEEEEECCCCCE
Q 019384          224 QAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNK----KRLYQYSKYPTSIAALSFSRDGRL  299 (342)
Q Consensus       224 ~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~----~~~~~~~~~~~~V~~v~~spdg~~  299 (342)
                      ..+.+  .-|.         ..|.||.|+|.-.++.+|+.|..|++-|++..    -.+.....|...+..+.|.|..-.
T Consensus       265 ~iq~f--~phs---------adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~s  333 (350)
T KOG0641|consen  265 MIQRF--HPHS---------ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFS  333 (350)
T ss_pred             eeeee--CCCc---------cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccce
Confidence            43332  1222         25999999999999999999999999998731    123344578899999999999888


Q ss_pred             EEEEEecc
Q 019384          300 LAVASSYT  307 (342)
Q Consensus       300 las~s~~~  307 (342)
                      +++.|.+.
T Consensus       334 fisssadk  341 (350)
T KOG0641|consen  334 FISSSADK  341 (350)
T ss_pred             eeeccCcc
Confidence            88877765

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=1e-21  Score=185.05  Aligned_cols=214  Identities=17%  Similarity=0.205  Sum_probs=147.5

Q ss_pred             EeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCC--CCeEEEecCCcEEEEEeccCce---------eecccCCccee
Q 019384           37 SSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDD--SSGFSASADHTVRRLVFSHGKE---------DILGKHDAPVR  104 (342)
Q Consensus        37 ~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~--~~~~s~s~D~~i~~w~~~~~~~---------~~~~~h~~~V~  104 (342)
                      |+.++.|+||+..... +....+|.+.|.+++|+|.  ..+++|+.|++|++|++.+...         ..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            6678899999875543 3445689999999999964  4567999999999999976421         24678999999


Q ss_pred             EEEEeCCCCE-EEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE--eccCCeEEEEEcCCeEEEEeCCCCCCccc
Q 019384          105 CIEYSYAAGQ-VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL--SLVGNRLVVATAGRHVNVYDLRNMSQPEQ  181 (342)
Q Consensus       105 ~~~~~~~~~~-l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~--s~~~~~~~~~s~d~~v~iwd~~~~~~~~~  181 (342)
                      +++|+|++.. |+|++.|++|++||++++..  ...+.   +...+.++  +.++..+++++.|+.|++||++++...  
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~--~~~i~---~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i--  202 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKR--AFQIN---MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA--  202 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcE--EEEEe---cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE--
Confidence            9999998865 57999999999999986432  11121   22334444  456778888889999999999875211  


Q ss_pred             ccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEe
Q 019384          182 RRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATG  261 (342)
Q Consensus       182 ~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sg  261 (342)
                                ..+.                                    +|...    -....+....|++++.+|+++
T Consensus       203 ----------~tl~------------------------------------gH~g~----~~s~~v~~~~fs~d~~~IlTt  232 (568)
T PTZ00420        203 ----------SSFH------------------------------------IHDGG----KNTKNIWIDGLGGDDNYILST  232 (568)
T ss_pred             ----------EEEe------------------------------------cccCC----ceeEEEEeeeEcCCCCEEEEE
Confidence                      0000                                    00000    000023445678899999987


Q ss_pred             cCCC----eEEEEeCCC-ceeeec--cCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          262 GCDG----FVNVWDGNN-KKRLYQ--YSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       262 s~Dg----~I~iWd~~~-~~~~~~--~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      +.|+    +|+|||+++ .+.+..  +..+.+.+...-..++|.++++|+.+.
T Consensus       233 G~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~  285 (568)
T PTZ00420        233 GFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG  285 (568)
T ss_pred             EcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence            7764    799999985 444443  333444555555577799999998765

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=6.6e-23  Score=165.96  Aligned_cols=254  Identities=17%  Similarity=0.226  Sum_probs=176.9

Q ss_pred             ecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCce----eecccCCcceeEEEEeC--CCCEEEEeeCCCcEEEEcCC
Q 019384           58 MHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKE----DILGKHDAPVRCIEYSY--AAGQVITGSWDKSLKCWDPR  130 (342)
Q Consensus        58 ~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~----~~~~~h~~~V~~~~~~~--~~~~l~sgs~D~~I~iWd~~  130 (342)
                      .|.+.|.++... -+.+++|||.|++|+++..+....    ..|.+|.++|+.++|-.  -|.+|+|+|+||.|.||.-+
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~   88 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE   88 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence            477777766654 566788999999999998876552    35789999999999964  67899999999999999865


Q ss_pred             CCCCcceeeeeecCCCCcEEEEeccCC----eEEEEEcCCeEEEEeCCCCC-CcccccccccceeeEEEEEeeC---C--
Q 019384          131 GASGQERTLVGTYPQPERVYSLSLVGN----RLVVATAGRHVNVYDLRNMS-QPEQRRESSLKYQTRCVRCYPN---G--  200 (342)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~v~~~s~~~~----~~~~~s~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~---~--  200 (342)
                      ++.  -........+...+.++++-++    .|+++++||.|.+.+.+... -...+....+..-++++++.|.   |  
T Consensus        89 ~g~--w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   89 NGR--WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             CCc--hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            431  1111111123445556665443    68889999999999987641 1112222234445677888775   3  


Q ss_pred             ---------ceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC----CeEEEecCCCeE
Q 019384          201 ---------TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY----GTFATGGCDGFV  267 (342)
Q Consensus       201 ---------~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~----~~l~sgs~Dg~I  267 (342)
                               +.+++++.|+.++|  |......-.....|.+|..         -|+.+|+.|.-    .++|+||.||+|
T Consensus       167 ~~~~~~~~~krlvSgGcDn~Vki--W~~~~~~w~~e~~l~~H~d---------wVRDVAwaP~~gl~~s~iAS~SqDg~v  235 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGCDNLVKI--WKFDSDSWKLERTLEGHKD---------WVRDVAWAPSVGLPKSTIASCSQDGTV  235 (299)
T ss_pred             cccCcccccceeeccCCccceee--eecCCcchhhhhhhhhcch---------hhhhhhhccccCCCceeeEEecCCCcE
Confidence                     34889999988766  6654433333334666765         48899999974    468999999999


Q ss_pred             EEEeCCCc-e--eeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc-CCccccCCC
Q 019384          268 NVWDGNNK-K--RLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN-EIEVKPKPK  335 (342)
Q Consensus       268 ~iWd~~~~-~--~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  335 (342)
                      .||..+.. +  ....++..+..++.++||+.|.+||+++.+.           .+.+|+=+ ++.+++-++
T Consensus       236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN-----------kvtlwke~~~Gkw~~v~~  296 (299)
T KOG1332|consen  236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN-----------KVTLWKENVDGKWEEVGE  296 (299)
T ss_pred             EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCc-----------EEEEEEeCCCCcEEEccc
Confidence            99976521 1  1233455678899999999999999988766           58888554 566666554

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.1e-21  Score=184.20  Aligned_cols=275  Identities=17%  Similarity=0.265  Sum_probs=201.0

Q ss_pred             CCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-e-eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEE
Q 019384           10 SGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-V-LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLV   87 (342)
Q Consensus        10 ~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-~-~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~   87 (342)
                      +-..|+..|..+-+.|+|.|+|..|.+++.||.||+|+.... . ....-.++..|.+++.. ...+++++.+++|.++-
T Consensus         4 ~r~klRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~-s~~f~~~s~~~tv~~y~   82 (933)
T KOG1274|consen    4 TRLKLRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY-SNHFLTGSEQNTVLRYK   82 (933)
T ss_pred             ccccchhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec-ccceEEeeccceEEEee
Confidence            345677899999999999999999999999999999997543 2 22222277778777764 33788999999999999


Q ss_pred             eccCcee-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEc
Q 019384           88 FSHGKED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATA  164 (342)
Q Consensus        88 ~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~  164 (342)
                      +..+... .+...+-++++++|+-+|+.++.||.|-.|++-+......+  ..+..+  ...+.++++  .++.+++.+.
T Consensus        83 fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~--~~lrgh--~apVl~l~~~p~~~fLAvss~  158 (933)
T KOG1274|consen   83 FPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE--KVLRGH--DAPVLQLSYDPKGNFLAVSSC  158 (933)
T ss_pred             CCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh--eeeccc--CCceeeeeEcCCCCEEEEEec
Confidence            9888754 56667789999999999999999999999999987644332  233333  344555555  4568999999


Q ss_pred             CCeEEEEeCCCCCCccccccc-----cc-ceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384          165 GRHVNVYDLRNMSQPEQRRES-----SL-KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA  238 (342)
Q Consensus       165 d~~v~iwd~~~~~~~~~~~~~-----~~-~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~  238 (342)
                      ||.|++||+.++.........     .. ......++|+|++..+++...++.|.+  |+.....  ..+.++..     
T Consensus       159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv--y~r~~we--~~f~Lr~~-----  229 (933)
T KOG1274|consen  159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKV--YSRKGWE--LQFKLRDK-----  229 (933)
T ss_pred             CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEE--EccCCce--eheeeccc-----
Confidence            999999999876432211110     01 112345789999999999999998765  6653322  22222221     


Q ss_pred             CCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEE
Q 019384          239 GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       239 ~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s  304 (342)
                        .+...++.+.|+|+|++||++..||.|-|||+++...    ......|.+++|-|++.-|-.-.
T Consensus       230 --~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~  289 (933)
T KOG1274|consen  230 --LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLIT  289 (933)
T ss_pred             --ccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEe
Confidence              1111388899999999999999999999999997322    23346799999999988665443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=5.1e-22  Score=181.31  Aligned_cols=261  Identities=16%  Similarity=0.254  Sum_probs=186.8

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee---eeecCCceEE-EEEe--CCCCeEEEecCCcEEEEEec
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG---EFMHGGPVLD-CCFH--DDSSGFSASADHTVRRLVFS   89 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~---~~~h~~~V~~-~~~~--~~~~~~s~s~D~~i~~w~~~   89 (342)
                      ++|...|..+++.+. ..++++|.||++++|+-.......   ..+|.+-|.. ++|.  +.+++++|+.|..+.+|...
T Consensus        11 ~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~   89 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS   89 (745)
T ss_pred             ccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC
Confidence            688999999987644 478899999999999986554332   4467787766 8885  45568999999999999988


Q ss_pred             cCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec-cCCeEEEEEcCCe
Q 019384           90 HGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL-VGNRLVVATAGRH  167 (342)
Q Consensus        90 ~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~-~~~~~~~~s~d~~  167 (342)
                      +.. ..++.+|...|.|++...++. ++|||||.|.++|-.....    ..+..  |+..|.++.. ..+.+++|++|++
T Consensus        90 ~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~----~~l~g--H~asVWAv~~l~e~~~vTgsaDKt  162 (745)
T KOG0301|consen   90 QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV----YSLQG--HTASVWAVASLPENTYVTGSADKT  162 (745)
T ss_pred             CCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhh----cccCC--cchheeeeeecCCCcEEeccCcce
Confidence            776 457899999999998776665 9999999999999764211    11222  3344544443 3458999999999


Q ss_pred             EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384          168 VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN  247 (342)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  247 (342)
                      |++|.-.+.  . ..+ ..+..-+..+++.+++ .+++++.|+.+  ++|+....   ..+.+.+|...         |.
T Consensus       163 IklWk~~~~--l-~tf-~gHtD~VRgL~vl~~~-~flScsNDg~I--r~w~~~ge---~l~~~~ghtn~---------vY  223 (745)
T KOG0301|consen  163 IKLWKGGTL--L-KTF-SGHTDCVRGLAVLDDS-HFLSCSNDGSI--RLWDLDGE---VLLEMHGHTNF---------VY  223 (745)
T ss_pred             eeeccCCch--h-hhh-ccchhheeeeEEecCC-CeEeecCCceE--EEEeccCc---eeeeeeccceE---------EE
Confidence            999986432  1 111 1122234455566654 57888888876  56888432   23334455542         67


Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCc-ceEEEEECCCCCEEEEEEecc
Q 019384          248 AIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPT-SIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       248 ~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~-~V~~v~~spdg~~las~s~~~  307 (342)
                      ++...++++.++|+++|++++||+..  .+.+.++ |+. .||++.+-++|.++ +|++++
T Consensus       224 sis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~-lPttsiWsa~~L~NgDIv-vg~SDG  280 (745)
T KOG0301|consen  224 SISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT-LPTTSIWSAKVLLNGDIV-VGGSDG  280 (745)
T ss_pred             EEEecCCCCeEEEecCCceEEEeecC--ceEEEEe-cCccceEEEEEeeCCCEE-EeccCc
Confidence            77777778899999999999999866  5665554 444 89999999999965 466654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.91  E-value=7.4e-23  Score=181.09  Aligned_cols=249  Identities=21%  Similarity=0.265  Sum_probs=179.1

Q ss_pred             CccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-------------eeeeecCCceEEEEEeCCC--CeE
Q 019384           11 GRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-------------RGEFMHGGPVLDCCFHDDS--SGF   75 (342)
Q Consensus        11 ~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-------------~~~~~h~~~V~~~~~~~~~--~~~   75 (342)
                      +|.|-.-....|.+++||+.|+.|+..+...-++|+|-.+..+             .-+.+|-..++|.+|+|..  .++
T Consensus       206 fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~Fl  285 (641)
T KOG0772|consen  206 FRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFL  285 (641)
T ss_pred             hhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceE
Confidence            4445445567899999999999999999999999999765332             2234688889999998654  578


Q ss_pred             EEecCCcEEEEEeccCce--eec-----ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeee-eecCC--
Q 019384           76 SASADHTVRRLVFSHGKE--DIL-----GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLV-GTYPQ--  145 (342)
Q Consensus        76 s~s~D~~i~~w~~~~~~~--~~~-----~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~-~~~~~--  145 (342)
                      +++.|+++|+|++...+.  .++     .+-.-++++|+|++|++.||+|..||.|.+||.++........+ ..|..  
T Consensus       286 T~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~  365 (641)
T KOG0772|consen  286 TCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQ  365 (641)
T ss_pred             EecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCC
Confidence            999999999999876552  122     23445689999999999999999999999999865333222222 23332  


Q ss_pred             CCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccc-cccceeeEEEEEeeCCceEEEEcc----CCeEEEEEeech
Q 019384          146 PERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRE-SSLKYQTRCVRCYPNGTGYALSSV----EGRVAMEFFDLS  220 (342)
Q Consensus       146 ~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~s~----~~~~~i~~~d~~  220 (342)
                      ..+.+.|+.+++.|++-+.|+++++||+++.+.+..... ....+..+.+.|+|+.+.+++|+.    ...-.+.|||..
T Consensus       366 ~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~  445 (641)
T KOG0772|consen  366 DITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM  445 (641)
T ss_pred             ceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence            234556777889999999999999999999876543222 223344566779999999888863    222356788864


Q ss_pred             hhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEE
Q 019384          221 EASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVW  270 (342)
Q Consensus       221 ~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iW  270 (342)
                      +-..+.+..+.           ...|..+.|||.-+.|..|+.||+++||
T Consensus       446 t~d~v~ki~i~-----------~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  446 TLDTVYKIDIS-----------TASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             ceeeEEEecCC-----------CceEEEEeecchhhheeeecCCCceEEE
Confidence            33222221111           1147788999998888899999999988

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=1.1e-21  Score=179.76  Aligned_cols=279  Identities=17%  Similarity=0.172  Sum_probs=204.1

Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEECCC----ceeeeeeecCCceEEEEEeC------------CCCeEEEecCCcEEEE
Q 019384           23 SNLRFSNHSDHLLVSSWDKSVRLYDASA----NVLRGEFMHGGPVLDCCFHD------------DSSGFSASADHTVRRL   86 (342)
Q Consensus        23 ~~l~fs~~~~~l~s~s~Dgti~vwd~~~----~~~~~~~~h~~~V~~~~~~~------------~~~~~s~s~D~~i~~w   86 (342)
                      -++.|++..+.|...=.|..+.|||+..    ++....+-|+..|+++.-.|            .+-+++|+.|++||+|
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW  407 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW  407 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence            3678999999998888999999999975    45666677998888876533            2346799999999999


Q ss_pred             EeccCc---e--e-e---------c-----------------------ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEc
Q 019384           87 VFSHGK---E--D-I---------L-----------------------GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD  128 (342)
Q Consensus        87 ~~~~~~---~--~-~---------~-----------------------~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd  128 (342)
                      +++...   .  + .         +                       .+....+++++.+|+++.|++|..-|.|+++|
T Consensus       408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~  487 (1080)
T KOG1408|consen  408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD  487 (1080)
T ss_pred             ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence            987621   0  0 0         0                       01234599999999999999999999999999


Q ss_pred             CCCCCCcceeeeeecCCCCcEEEEeccC-----CeEEEEEcCCeEEEEeCCCCCCccccccc------------------
Q 019384          129 PRGASGQERTLVGTYPQPERVYSLSLVG-----NRLVVATAGRHVNVYDLRNMSQPEQRRES------------------  185 (342)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~v~~~s~~~-----~~~~~~s~d~~v~iwd~~~~~~~~~~~~~------------------  185 (342)
                      +.....  ...+..  |...+.++.++-     +.+++++.|+.|++||+...-.+.+....                  
T Consensus       488 Lq~l~~--~~~~eA--HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~  563 (1080)
T KOG1408|consen  488 LQELEY--TCFMEA--HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRK  563 (1080)
T ss_pred             ehhhhh--hhheec--ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceE
Confidence            875332  122333  345566666542     36889999999999997532111000000                  


Q ss_pred             -----------------------------c-cceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEe
Q 019384          186 -----------------------------S-LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK  235 (342)
Q Consensus       186 -----------------------------~-~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~  235 (342)
                                                   . -+.....+.+.|..+.++++..|..++  +||+...++.+.+  ++.+ 
T Consensus       564 MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir--if~i~sgKq~k~F--Kgs~-  638 (1080)
T KOG1408|consen  564 MISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR--IFDIESGKQVKSF--KGSR-  638 (1080)
T ss_pred             EEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceE--EEeccccceeeee--cccc-
Confidence                                         0 001123456677777788888887664  5888766555443  2211 


Q ss_pred             cCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCC
Q 019384          236 SEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPH  315 (342)
Q Consensus       236 ~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~  315 (342)
                           ++.+..-.+...|.|-+||+...|+++.++|..+++++.++.||..-|+.|.|++|-++|++.++++        
T Consensus       639 -----~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDg--------  705 (1080)
T KOG1408|consen  639 -----DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDG--------  705 (1080)
T ss_pred             -----cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCc--------
Confidence                 1122355688899999999999999999999999999999999999999999999999999999998        


Q ss_pred             CCCcEEEEEcc
Q 019384          316 EPDAIFVRSVN  326 (342)
Q Consensus       316 ~~~~~~~~~~~  326 (342)
                         |||||++.
T Consensus       706 ---CIFvW~lp  713 (1080)
T KOG1408|consen  706 ---CIFVWKLP  713 (1080)
T ss_pred             ---eEEEEECc
Confidence               99999985

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2e-22  Score=182.03  Aligned_cols=233  Identities=16%  Similarity=0.206  Sum_probs=186.4

Q ss_pred             eecCCceEEEEEeCCCCeE-EEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCC
Q 019384           57 FMHGGPVLDCCFHDDSSGF-SASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASG  134 (342)
Q Consensus        57 ~~h~~~V~~~~~~~~~~~~-s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~  134 (342)
                      ..++..|.++.|+|-.-++ ++-..|.+.+|+.++.. .+.+....-+|+++.|...-+.+++||.|..||+++..+..+
T Consensus        10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek   89 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK   89 (794)
T ss_pred             hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee
Confidence            3488899999999876664 66689999999998876 445666778899999998888999999999999999876544


Q ss_pred             cceeeeeecCCCCcEEEEeccCC--eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeC-CceEEEEccCCe
Q 019384          135 QERTLVGTYPQPERVYSLSLVGN--RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN-GTGYALSSVEGR  211 (342)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~s~~~~--~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~s~~~~  211 (342)
                      .  ..+.  .|...+.++...|.  .++++|.|-+|++||..+.=...+.++ .+..-+.++++.|. .+.+++++.|.+
T Consensus        90 V--~~Fe--AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~fnPkD~ntFaS~sLDrT  164 (794)
T KOG0276|consen   90 V--KTFE--AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVAFNPKDPNTFASASLDRT  164 (794)
T ss_pred             e--EEee--ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEEecCCCccceeeeecccc
Confidence            2  2233  34455556666554  789999999999999987533333333 23345788899885 467999999998


Q ss_pred             EEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC--CeEEEecCCCeEEEEeCCCceeeeccCCCCcceE
Q 019384          212 VAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY--GTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIA  289 (342)
Q Consensus       212 ~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~--~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~  289 (342)
                      ++  +|.+.  +....+.+.+|.+         .|+||.|-+.|  .+|+||+.|.+|+|||.++..|++++.||...|.
T Consensus       165 VK--VWslg--s~~~nfTl~gHek---------GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs  231 (794)
T KOG0276|consen  165 VK--VWSLG--SPHPNFTLEGHEK---------GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVS  231 (794)
T ss_pred             EE--EEEcC--CCCCceeeecccc---------CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccce
Confidence            75  58884  3456678889887         49999998754  5899999999999999999999999999999999


Q ss_pred             EEEECCCCCEEEEEEecc
Q 019384          290 ALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       290 ~v~~spdg~~las~s~~~  307 (342)
                      .+.|.|.=.++++||.++
T Consensus       232 ~v~fhp~lpiiisgsEDG  249 (794)
T KOG0276|consen  232 FVFFHPELPIIISGSEDG  249 (794)
T ss_pred             EEEecCCCcEEEEecCCc
Confidence            999999999999999765

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.90  E-value=1.4e-21  Score=179.86  Aligned_cols=271  Identities=18%  Similarity=0.213  Sum_probs=204.3

Q ss_pred             CCCeEEEEEcCCCC---eEEEEeCCCcEEEEECCC-cee---------eeeeecCCceEEEEEeCCCCeEEEecCCcEEE
Q 019384           19 SDGISNLRFSNHSD---HLLVSSWDKSVRLYDASA-NVL---------RGEFMHGGPVLDCCFHDDSSGFSASADHTVRR   85 (342)
Q Consensus        19 ~~~V~~l~fs~~~~---~l~s~s~Dgti~vwd~~~-~~~---------~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~   85 (342)
                      +..|-++.+-|.+.   .|++ -.++++.+|-+.. +..         +...+|...|.+++++.+..++..++.+.+++
T Consensus       320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~Siki  398 (888)
T KOG0306|consen  320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKI  398 (888)
T ss_pred             hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEE
Confidence            45677778877653   3344 6788999998754 221         44558999999999998877776667789999


Q ss_pred             EEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc
Q 019384           86 LVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA  164 (342)
Q Consensus        86 w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~  164 (342)
                      |+..+.++ +++.  ...+.+..|.|.+.++++|...|.+.++|+.+.....  ....|....-..++.+++..++++++
T Consensus       399 Wn~~t~kciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E--ti~AHdgaIWsi~~~pD~~g~vT~sa  474 (888)
T KOG0306|consen  399 WNRDTLKCIRTIT--CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE--TIRAHDGAIWSISLSPDNKGFVTGSA  474 (888)
T ss_pred             EEccCcceeEEec--cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh--hhhccccceeeeeecCCCCceEEecC
Confidence            99987764 3332  2378899999999999999999999999997644321  22233222223345556678999999


Q ss_pred             CCeEEEEeCCCCCC-c---------ccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEE
Q 019384          165 GRHVNVYDLRNMSQ-P---------EQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR  234 (342)
Q Consensus       165 d~~v~iwd~~~~~~-~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~  234 (342)
                      |++|++||..-... +         .+.....+...+.|++++||+++++++-.|+++.+++.|.-    .....+=+|.
T Consensus       475 DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl----KFflsLYGHk  550 (888)
T KOG0306|consen  475 DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL----KFFLSLYGHK  550 (888)
T ss_pred             CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce----eeeeeecccc
Confidence            99999999642111 0         01112234456789999999999999999999999888752    2222344555


Q ss_pred             ecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      .         ||.|+..|||+.+++|||.|++|+||-++=|.|-+.+..|...|.++.|-|+...+-+++.+.
T Consensus       551 L---------PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~  614 (888)
T KOG0306|consen  551 L---------PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDG  614 (888)
T ss_pred             c---------ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcc
Confidence            4         899999999999999999999999999888888889999999999999999999999888743

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.6e-21  Score=154.37  Aligned_cols=240  Identities=21%  Similarity=0.275  Sum_probs=171.0

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc------eeeeeeecCCceEEEEEeCC----CCeE-EEe-cCCcEE
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN------VLRGEFMHGGPVLDCCFHDD----SSGF-SAS-ADHTVR   84 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~------~~~~~~~h~~~V~~~~~~~~----~~~~-s~s-~D~~i~   84 (342)
                      -|.+.|++++|||.|++|||||.|++|++......      .-..+..|.+.|..++|.++    +.++ +++ .|..|.
T Consensus        87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy  166 (350)
T KOG0641|consen   87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIY  166 (350)
T ss_pred             ccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEE
Confidence            34789999999999999999999999999876432      22344569999999999733    2333 433 455666


Q ss_pred             EEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeec-------CCCCcEEEEeccC
Q 019384           85 RLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTY-------PQPERVYSLSLVG  156 (342)
Q Consensus        85 ~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~-------~~~~~v~~~s~~~  156 (342)
                      +-|...+. ...+.+|++-|.++ ++.++-.|++||.|++||.||++-....  ..+...       ......+++++.+
T Consensus       167 ~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v--~~l~~~~~~~glessavaav~vdpsg  243 (350)
T KOG0641|consen  167 ITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCV--NTLDNDFHDGGLESSAVAAVAVDPSG  243 (350)
T ss_pred             EeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeecccee--eeccCcccCCCcccceeEEEEECCCc
Confidence            66665555 35688999999888 5667889999999999999999743221  112111       1112334566667


Q ss_pred             CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhh--hcccceeeeEE
Q 019384          157 NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAS--QAKKYAFKCHR  234 (342)
Q Consensus       157 ~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~--~~~~~~~~~h~  234 (342)
                      ..++++-+|....+||+|.++. ++++ .++...+.||.|+|...++++++-|..++  +-|+...-  .........|.
T Consensus       244 rll~sg~~dssc~lydirg~r~-iq~f-~phsadir~vrfsp~a~yllt~syd~~ik--ltdlqgdla~el~~~vv~ehk  319 (350)
T KOG0641|consen  244 RLLASGHADSSCMLYDIRGGRM-IQRF-HPHSADIRCVRFSPGAHYLLTCSYDMKIK--LTDLQGDLAHELPIMVVAEHK  319 (350)
T ss_pred             ceeeeccCCCceEEEEeeCCce-eeee-CCCccceeEEEeCCCceEEEEecccceEE--EeecccchhhcCceEEEEecc
Confidence            7899999999999999998743 3433 34556789999999999999999988765  46664321  11111222232


Q ss_pred             ecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeC
Q 019384          235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDG  272 (342)
Q Consensus       235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~  272 (342)
                      .         .+-.+.|+|..-.+++.+.|.++.+|-.
T Consensus       320 d---------k~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  320 D---------KAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             C---------ceEEEEecCccceeeeccCcceEEEecc
Confidence            2         2456899998888999999999999964

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.4e-22  Score=169.77  Aligned_cols=244  Identities=24%  Similarity=0.302  Sum_probs=181.8

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECC------C--------c--e-------------------------ee
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDAS------A--------N--V-------------------------LR   54 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~------~--------~--~-------------------------~~   54 (342)
                      .+|.+.|++|+|++.+.+++|+|.|++.-||...      .        +  +                         +.
T Consensus       187 ~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~  266 (481)
T KOG0300|consen  187 TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLM  266 (481)
T ss_pred             cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeee
Confidence            5899999999999999999999999999999821      0        0  0                         11


Q ss_pred             eeeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCC
Q 019384           55 GEFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA  132 (342)
Q Consensus        55 ~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~  132 (342)
                      .+.+|.+.|.++.|. .+.+++++|.|.+..+||++++.. ..+.+|....+-|.-+|..++++|+|.|.+.|+||++..
T Consensus       267 ~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea  346 (481)
T KOG0300|consen  267 RLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA  346 (481)
T ss_pred             eeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh
Confidence            233688999999997 455678999999999999999984 568999999999999999999999999999999999832


Q ss_pred             CCcceeeeeecCCCCcEEEEecc-CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCe
Q 019384          133 SGQERTLVGTYPQPERVYSLSLV-GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR  211 (342)
Q Consensus       133 ~~~~~~~~~~~~~~~~v~~~s~~-~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~  211 (342)
                       ......++.  ++..+.+..+. ++.+++++.|.+|++||++++..+....  .....++.++++..+..+++--.+..
T Consensus       347 -I~sV~VFQG--HtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATI--RtdS~~NRvavs~g~~iIAiPhDNRq  421 (481)
T KOG0300|consen  347 -IQSVAVFQG--HTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATI--RTDSPANRVAVSKGHPIIAIPHDNRQ  421 (481)
T ss_pred             -cceeeeecc--cccceeEEEEecCCceeecCCCceEEEeeeccccCcceee--ecCCccceeEeecCCceEEeccCCce
Confidence             222222332  45667777774 5689999999999999999986553221  12234566777776666666665555


Q ss_pred             EEEEEeechhhhhcc--cceeeeEEecCCCCceeeeeeEEEEcCCC--CeEEEecCCCeEEEEeCCCc
Q 019384          212 VAMEFFDLSEASQAK--KYAFKCHRKSEAGRDIVYPVNAIAFHPIY--GTFATGGCDGFVNVWDGNNK  275 (342)
Q Consensus       212 ~~i~~~d~~~~~~~~--~~~~~~h~~~~~~~~~~~~v~~v~~sp~~--~~l~sgs~Dg~I~iWd~~~~  275 (342)
                      +  ++||+......+  +..-++|+.         .|.|++|..+.  .-|++|+.|+.+.-|.+...
T Consensus       422 v--RlfDlnG~RlaRlPrtsRqgHrR---------MV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  422 V--RLFDLNGNRLARLPRTSRQGHRR---------MVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             E--EEEecCCCccccCCcccccccce---------eeeeeeccccCcccccccccccceeeeeEeccc
Confidence            4  569986443222  123446665         48999997543  35889999999999988653

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.90  E-value=6.8e-22  Score=183.77  Aligned_cols=287  Identities=18%  Similarity=0.249  Sum_probs=210.3

Q ss_pred             CCCCCccCCCC-CC-CCeEEEEEcCCCCe-EEEEeCCCcEEEEECCCceeeee--eecCCceEEEEEeCCCCe-EEEecC
Q 019384            7 PPTSGRELGNP-PS-DGISNLRFSNHSDH-LLVSSWDKSVRLYDASANVLRGE--FMHGGPVLDCCFHDDSSG-FSASAD   80 (342)
Q Consensus         7 ~~~~~~~~~~~-~~-~~V~~l~fs~~~~~-l~s~s~Dgti~vwd~~~~~~~~~--~~h~~~V~~~~~~~~~~~-~s~s~D   80 (342)
                      |...++.|... +. +.|++++|..||+. ||+|+..|.+-+||+...++...  -.|.+.|....|.++.-+ ++++.|
T Consensus       230 NlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~D  309 (910)
T KOG1539|consen  230 NLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGAD  309 (910)
T ss_pred             EcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCC
Confidence            34556666643 33 79999999999976 56667779999999998776543  369899999999877665 699999


Q ss_pred             CcEEEEEeccCc--ee---ecccCCcceeEEEEe-CCCCEEEEeeCCCcEEEEcCCCCC-----Cc-----------ce-
Q 019384           81 HTVRRLVFSHGK--ED---ILGKHDAPVRCIEYS-YAAGQVITGSWDKSLKCWDPRGAS-----GQ-----------ER-  137 (342)
Q Consensus        81 ~~i~~w~~~~~~--~~---~~~~h~~~V~~~~~~-~~~~~l~sgs~D~~I~iWd~~~~~-----~~-----------~~-  137 (342)
                      +.+++|..+++.  .+   .-.||..+-.|+.|. .++..+++++.|++.+.+++....     ++           .. 
T Consensus       310 nSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~  389 (910)
T KOG1539|consen  310 NSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFS  389 (910)
T ss_pred             CceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccc
Confidence            999999888665  22   336899999999988 466778899999988877542100     00           00 


Q ss_pred             ---------e--------------eeeec-----------------------------CCCCcEEEEeccCCeEEEEEcC
Q 019384          138 ---------T--------------LVGTY-----------------------------PQPERVYSLSLVGNRLVVATAG  165 (342)
Q Consensus       138 ---------~--------------~~~~~-----------------------------~~~~~v~~~s~~~~~~~~~s~d  165 (342)
                               .              .+..+                             ......++++..|+..+.|++.
T Consensus       390 ~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~  469 (910)
T KOG1539|consen  390 TEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK  469 (910)
T ss_pred             hhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC
Confidence                     0              00000                             0011234456668888889999


Q ss_pred             CeEEEEeCCCCCCcccc-cccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceee
Q 019384          166 RHVNVYDLRNMSQPEQR-RESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVY  244 (342)
Q Consensus       166 ~~v~iwd~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~  244 (342)
                      |+|-+|+++.+-..... ....++..++.+++...++.+++++.+|.+  .+||.........+.            ...
T Consensus       470 G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gil--kfw~f~~k~l~~~l~------------l~~  535 (910)
T KOG1539|consen  470 GTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGIL--KFWDFKKKVLKKSLR------------LGS  535 (910)
T ss_pred             CeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceE--EEEecCCcceeeeec------------cCC
Confidence            99999999886332111 123455678888888888888999888864  689985432111111            112


Q ss_pred             eeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       245 ~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      ++.++.+|.....++.+..|=.|+++|..+.+.++.+.+|.++|++++|||||++|++++.+.
T Consensus       536 ~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~  598 (910)
T KOG1539|consen  536 SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS  598 (910)
T ss_pred             CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC
Confidence            577888999899999999999999999999999999999999999999999999999999855

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.90  E-value=1.4e-22  Score=169.30  Aligned_cols=246  Identities=19%  Similarity=0.235  Sum_probs=171.5

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce---eeeeeecCCceEEEEEeCCCCeEEEecCC-cEEEEEeccC
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV---LRGEFMHGGPVLDCCFHDDSSGFSASADH-TVRRLVFSHG   91 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~---~~~~~~h~~~V~~~~~~~~~~~~s~s~D~-~i~~w~~~~~   91 (342)
                      ..|.+.|+.|.|.|-...|+||+.|++|++||.+...   ....+....+|.++.|+|.+..+..+.|. ++++||+.+-
T Consensus       169 YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~  248 (430)
T KOG0640|consen  169 YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY  248 (430)
T ss_pred             hhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccce
Confidence            4688999999999999999999999999999997542   12233456789999999998887666665 7899999987


Q ss_pred             ceee----cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEE--EeccCCeEEEEEcC
Q 019384           92 KEDI----LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYS--LSLVGNRLVVATAG  165 (342)
Q Consensus        92 ~~~~----~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~--~s~~~~~~~~~s~d  165 (342)
                      +...    -.+|++.|+++.+++.+++-+|+|.||.|||||=-+..+  ...+........+++  |..+++++++.+.|
T Consensus       249 QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC--v~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D  326 (430)
T KOG0640|consen  249 QCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC--VRTIGNAHGGSEVCSAVFTKNGKYILSSGKD  326 (430)
T ss_pred             eEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH--HHHHHhhcCCceeeeEEEccCCeEEeecCCc
Confidence            7432    357999999999999999999999999999999433222  112222222334444  45567899999999


Q ss_pred             CeEEEEeCCCCCCccccccccccee--eEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384          166 RHVNVYDLRNMSQPEQRRESSLKYQ--TRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV  243 (342)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~  243 (342)
                      ..+++|.+.+++....-........  ...-+.+....-+++--.+.+..+.-||.+.......+.+          +|.
T Consensus       327 S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl----------gHn  396 (430)
T KOG0640|consen  327 STVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL----------GHN  396 (430)
T ss_pred             ceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc----------CCC
Confidence            9999999998765433222211111  0011111111112222233334456799876654444332          334


Q ss_pred             eeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          244 YPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       244 ~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      ++++++..||.+.-+++||.|..+|+|-.+
T Consensus       397 ~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  397 GAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             CCceEEEeCCCCCceeeecccceeeeeeec
Confidence            579999999999999999999999999643

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.90  E-value=9.6e-22  Score=170.77  Aligned_cols=243  Identities=17%  Similarity=0.179  Sum_probs=180.4

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCC-CeEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDS-SGFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~~~   93 (342)
                      .+|...|+++.|+++...+++++.|..||||...... ......|..+|+.+...+.+ .+++++.|+++...|++++..
T Consensus       258 ~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~  337 (506)
T KOG0289|consen  258 KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ  337 (506)
T ss_pred             cCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE
Confidence            5888999999999999999999999999999986543 33445699999999998654 567999999999999988875


Q ss_pred             eecccCC---cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEE
Q 019384           94 DILGKHD---APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNV  170 (342)
Q Consensus        94 ~~~~~h~---~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~i  170 (342)
                      .....|.   -.+++++|+|||-.|.+|+.|+.+++||+.++..  ...+..+..+.+.++|+-+|..+++++.|+.|++
T Consensus       338 lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~--~a~Fpght~~vk~i~FsENGY~Lat~add~~V~l  415 (506)
T KOG0289|consen  338 LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN--VAKFPGHTGPVKAISFSENGYWLATAADDGSVKL  415 (506)
T ss_pred             EEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc--cccCCCCCCceeEEEeccCceEEEEEecCCeEEE
Confidence            5443342   3488999999999999999999999999986543  2233344445555566667789999999999999


Q ss_pred             EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384          171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA  250 (342)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  250 (342)
                      ||+|..+...... ..-...+..+.+...|+++++++.  ++.+++++-..........+.         ++.+..+++.
T Consensus       416 wDLRKl~n~kt~~-l~~~~~v~s~~fD~SGt~L~~~g~--~l~Vy~~~k~~k~W~~~~~~~---------~~sg~st~v~  483 (506)
T KOG0289|consen  416 WDLRKLKNFKTIQ-LDEKKEVNSLSFDQSGTYLGIAGS--DLQVYICKKKTKSWTEIKELA---------DHSGLSTGVR  483 (506)
T ss_pred             EEehhhcccceee-ccccccceeEEEcCCCCeEEeecc--eeEEEEEecccccceeeehhh---------hcccccceee
Confidence            9999865322221 122235788889999999888844  455555653222111111122         2233578899


Q ss_pred             EcCCCCeEEEecCCCeEEEEeC
Q 019384          251 FHPIYGTFATGGCDGFVNVWDG  272 (342)
Q Consensus       251 ~sp~~~~l~sgs~Dg~I~iWd~  272 (342)
                      |....++++++|-|..++++..
T Consensus       484 Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  484 FGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ecccceEEeeccchhheEEeec
Confidence            9999999999999999998753

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=9.6e-22  Score=171.91  Aligned_cols=250  Identities=18%  Similarity=0.212  Sum_probs=180.2

Q ss_pred             CCCCCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEe-CCCCeEEEecCCc
Q 019384            5 HPPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFH-DDSSGFSASADHT   82 (342)
Q Consensus         5 ~~~~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~-~~~~~~s~s~D~~   82 (342)
                      |+.|..-..  ..|...|.+++.|+||++||||+.|..|.||+..+.+.+. +.+|.+.|.+++|- .-.+++++|.|.+
T Consensus       190 ~~~~~k~~r--~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drs  267 (479)
T KOG0299|consen  190 HGNPLKESR--KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRS  267 (479)
T ss_pred             ccCCCCccc--ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCc
Confidence            555554443  4899999999999999999999999999999999876544 46899999999997 4457899999999


Q ss_pred             EEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec-cCCeEE
Q 019384           83 VRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL-VGNRLV  160 (342)
Q Consensus        83 i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~-~~~~~~  160 (342)
                      +++|+++... ...+.+|.+.|.++........+-.|+-|+++++|++...+   +.++..  +...+-++++ +.+.++
T Consensus       268 vkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---qlifrg--~~~sidcv~~In~~Hfv  342 (479)
T KOG0299|consen  268 VKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES---QLIFRG--GEGSIDCVAFINDEHFV  342 (479)
T ss_pred             eEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc---eeeeeC--CCCCeeeEEEeccccee
Confidence            9999998766 45788999999999877545444446699999999984322   223332  2333445555 567899


Q ss_pred             EEEcCCeEEEEeCCCCCCcccccc-cc---------cceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccccee
Q 019384          161 VATAGRHVNVYDLRNMSQPEQRRE-SS---------LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAF  230 (342)
Q Consensus       161 ~~s~d~~v~iwd~~~~~~~~~~~~-~~---------~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~  230 (342)
                      +|+.+|.|.+|++...+....... +.         .+..+++++..|....+++++.+|.+++  |-+.+.......  
T Consensus       343 sGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrL--W~i~~g~r~i~~--  418 (479)
T KOG0299|consen  343 SGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRL--WKIEDGLRAINL--  418 (479)
T ss_pred             eccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEE--EEecCCccccce--
Confidence            999999999999987654322111 11         1135788999999999999999998765  766544221111  


Q ss_pred             eeEEecCCCCceeeeeeEEEEcCCCCeEEEe-cCCCeEEEEe
Q 019384          231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATG-GCDGFVNVWD  271 (342)
Q Consensus       231 ~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sg-s~Dg~I~iWd  271 (342)
                      -..      ....+-|++++|+++|+++++| +....+--|-
T Consensus       419 l~~------ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~  454 (479)
T KOG0299|consen  419 LYS------LSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW  454 (479)
T ss_pred             eee------cccccEEEEEEEccCCCEEEEecccccccceee
Confidence            110      0123469999999999966554 5555555553

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.90  E-value=2.6e-21  Score=176.69  Aligned_cols=292  Identities=16%  Similarity=0.160  Sum_probs=206.2

Q ss_pred             CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc--e-----eeeeee-cCCceEEEEEeCCCCe-EEEecCCcEE
Q 019384           14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN--V-----LRGEFM-HGGPVLDCCFHDDSSG-FSASADHTVR   84 (342)
Q Consensus        14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~--~-----~~~~~~-h~~~V~~~~~~~~~~~-~s~s~D~~i~   84 (342)
                      |.-+|+++|+++-|.|++..|+|+|+|+++.||...+.  .     ..++.+ ..+..+++.|++++.. ++-+.-|-.+
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            34599999999999999999999999999999997543  2     223333 3456889999877655 4667888999


Q ss_pred             EEEeccCc----eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-CCCcEEEEecc--CC
Q 019384           85 RLVFSHGK----EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP-QPERVYSLSLV--GN  157 (342)
Q Consensus        85 ~w~~~~~~----~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~v~~~s~~--~~  157 (342)
                      +|-.....    +..+.||.+.|+.++|.|.|++|+|.|.|.|=|++-.- +.+..-..+...+ |.-...++++-  +.
T Consensus       342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn~~~  420 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVNEDL  420 (764)
T ss_pred             EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehccCCc
Confidence            99732221    34678999999999999999999999999999998643 1111111111111 11223445542  34


Q ss_pred             eEEEEEcCCeEEEEeCCCC--------------------------------CCcc--------------c----------
Q 019384          158 RLVVATAGRHVNVYDLRNM--------------------------------SQPE--------------Q----------  181 (342)
Q Consensus       158 ~~~~~s~d~~v~iwd~~~~--------------------------------~~~~--------------~----------  181 (342)
                      .++++...+-+|+|+....                                +...              +          
T Consensus       421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L  500 (764)
T KOG1063|consen  421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL  500 (764)
T ss_pred             eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence            6676666677888874210                                0000              0          


Q ss_pred             ------------------ccccccceeeEEEEEeeCCceEEEEccCCe---EEEEEeechhhhhcccceeeeEEecCCCC
Q 019384          182 ------------------RRESSLKYQTRCVRCYPNGTGYALSSVEGR---VAMEFFDLSEASQAKKYAFKCHRKSEAGR  240 (342)
Q Consensus       182 ------------------~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~---~~i~~~d~~~~~~~~~~~~~~h~~~~~~~  240 (342)
                                        ...-.+.+.+.+++++|+++.++++.....   -.|++|+.....+  ...+..|..     
T Consensus       501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~--~~~L~~HsL-----  573 (764)
T KOG1063|consen  501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ--VQELEGHSL-----  573 (764)
T ss_pred             cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh--hheecccce-----
Confidence                              000013455788999999999988865433   3468899865433  335666765     


Q ss_pred             ceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCce----eeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCC
Q 019384          241 DIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK----RLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHE  316 (342)
Q Consensus       241 ~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~----~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~  316 (342)
                          .|+.++||||+++|++.|-|+++.+|..+...    .....+.|+.-|++..|+||+++||++|.+-         
T Consensus       574 ----TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK---------  640 (764)
T KOG1063|consen  574 ----TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK---------  640 (764)
T ss_pred             ----EEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc---------
Confidence                59999999999999999999999999875321    1233678999999999999999999999876         


Q ss_pred             CCcEEEEEccCC
Q 019384          317 PDAIFVRSVNEI  328 (342)
Q Consensus       317 ~~~~~~~~~~~~  328 (342)
                        .+.+|+..+.
T Consensus       641 --~VkVW~~~~~  650 (764)
T KOG1063|consen  641 --KVKVWEEPDL  650 (764)
T ss_pred             --eEEEEeccCc
Confidence              5777877665

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=4.2e-22  Score=161.31  Aligned_cols=247  Identities=21%  Similarity=0.208  Sum_probs=175.2

Q ss_pred             CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc---e-eeeeeecCCceEEEEEe-C--CCCeEEEecCCcEEEE
Q 019384           14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN---V-LRGEFMHGGPVLDCCFH-D--DSSGFSASADHTVRRL   86 (342)
Q Consensus        14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~---~-~~~~~~h~~~V~~~~~~-~--~~~~~s~s~D~~i~~w   86 (342)
                      ....|.+-|..+..+=-|.+|||+|.|++|||+.+...   . +..+.+|+|+|+.+.|. |  +..+++|++|+.+.+|
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            45788999999888888999999999999999998643   2 34456899999999996 3  3345799999999999


Q ss_pred             EeccCcee---ecccCCcceeEEEEeCCC--CEEEEeeCCCcEEEEcCCCCCC-cceeeeeecCCCCcEEEEecc-----
Q 019384           87 VFSHGKED---ILGKHDAPVRCIEYSYAA--GQVITGSWDKSLKCWDPRGASG-QERTLVGTYPQPERVYSLSLV-----  155 (342)
Q Consensus        87 ~~~~~~~~---~~~~h~~~V~~~~~~~~~--~~l~sgs~D~~I~iWd~~~~~~-~~~~~~~~~~~~~~v~~~s~~-----  155 (342)
                      .-.+++..   ....|...|++++|-|.+  -.|++++.||.|.+.+.++... ....+...  |+..+.++++.     
T Consensus        86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a--H~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA--HEIGVNSVSWAPASAP  163 (299)
T ss_pred             ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc--cccccceeeecCcCCC
Confidence            88777632   346799999999999964  4578999999999998765411 11112222  33333344332     


Q ss_pred             C-----------CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCC----ceEEEEccCCeEEEEEeech
Q 019384          156 G-----------NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLS  220 (342)
Q Consensus       156 ~-----------~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~s~~~~~~i~~~d~~  220 (342)
                      +           ..|++++.|+.|+||+..+.+=........+..-+..+++.|.-    ..++++++|+++.|  |..+
T Consensus       164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI--wt~~  241 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII--WTKD  241 (299)
T ss_pred             ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE--EEec
Confidence            1           36999999999999998875322222223344456778888764    35889999998866  5554


Q ss_pred             hhhhccc-ceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          221 EASQAKK-YAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       221 ~~~~~~~-~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      ......+ ..+..         -.-++..+.||+.|..|+.++-|..|++|.-.
T Consensus       242 ~e~e~wk~tll~~---------f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  242 EEYEPWKKTLLEE---------FPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             CccCccccccccc---------CCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            2211111 11110         01258889999999999999999999999643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=4.7e-20  Score=163.61  Aligned_cols=275  Identities=15%  Similarity=0.110  Sum_probs=178.6

Q ss_pred             CeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe--EEEecCCcEEEEEeccCcee-ecccCCcceeEEEE
Q 019384           32 DHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG--FSASADHTVRRLVFSHGKED-ILGKHDAPVRCIEY  108 (342)
Q Consensus        32 ~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~--~s~s~D~~i~~w~~~~~~~~-~~~~h~~~V~~~~~  108 (342)
                      +.++|++.|+++++||+.+++....+.+...+.++.|++++..  ++++.++.+++|+..+++.. .+..+. .+..++|
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~   80 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFAL   80 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEE
Confidence            5788999999999999988776666655556788999887764  35667899999999877643 233333 3567899


Q ss_pred             eCCCCEEE-EeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC-eEEEEeCCCCCCcccccccc
Q 019384          109 SYAAGQVI-TGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR-HVNVYDLRNMSQPEQRRESS  186 (342)
Q Consensus       109 ~~~~~~l~-sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~-~v~iwd~~~~~~~~~~~~~~  186 (342)
                      +|+++.++ +++.|+.|++||+++...  ...+. .........++.+++.+++++.++ .+..||..+.......   .
T Consensus        81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~--~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~---~  154 (300)
T TIGR03866        81 HPNGKILYIANEDDNLVTVIDIETRKV--LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV---L  154 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCeE--EeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE---E
Confidence            99998775 556789999999875321  11111 111223345666777888777664 4677898765322111   1


Q ss_pred             cceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEE-EecCC
Q 019384          187 LKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFA-TGGCD  264 (342)
Q Consensus       187 ~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~-sgs~D  264 (342)
                      ......+++++|+++.+++++ .++.+  .+||.........+.+..  ..... . ......++|+|++++++ +.+.+
T Consensus       155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v--~i~d~~~~~~~~~~~~~~--~~~~~-~-~~~~~~i~~s~dg~~~~~~~~~~  228 (300)
T TIGR03866       155 VDQRPRFAEFTADGKELWVSSEIGGTV--SVIDVATRKVIKKITFEI--PGVHP-E-AVQPVGIKLTKDGKTAFVALGPA  228 (300)
T ss_pred             cCCCccEEEECCCCCEEEEEcCCCCEE--EEEEcCcceeeeeeeecc--ccccc-c-cCCccceEECCCCCEEEEEcCCC
Confidence            122345688999998876554 46654  669986543222221111  00000 0 00134588999999854 44567


Q ss_pred             CeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccCCcc
Q 019384          265 GFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIEV  330 (342)
Q Consensus       265 g~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (342)
                      +.|.+||.++++.+..+. +...+.+++|+|||++|++++...   +       .|.+|+++...+
T Consensus       229 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~---~-------~i~v~d~~~~~~  283 (300)
T TIGR03866       229 NRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVS---N-------DVSVIDVAALKV  283 (300)
T ss_pred             CeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCC---C-------eEEEEECCCCcE
Confidence            789999999877665443 335789999999999998875422   2       388888876543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=7.1e-21  Score=166.58  Aligned_cols=286  Identities=14%  Similarity=0.199  Sum_probs=203.6

Q ss_pred             cCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc---eeeeeeecCCceEEEEEeCCCC--eEEEecCCcEEEEE
Q 019384           13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN---VLRGEFMHGGPVLDCCFHDDSS--GFSASADHTVRRLV   87 (342)
Q Consensus        13 ~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~---~~~~~~~h~~~V~~~~~~~~~~--~~s~s~D~~i~~w~   87 (342)
                      +...+...+|++|.|.|..+.|++|+.|++++||.+++.   ++....--.-+|.+++|.|.++  +++++-......||
T Consensus       207 Na~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD  286 (514)
T KOG2055|consen  207 NAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD  286 (514)
T ss_pred             ccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence            444566789999999999999999999999999999753   2334444567899999998776  45777777889999


Q ss_pred             eccCceee---cccCC-cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEE--EeccCCeEEE
Q 019384           88 FSHGKEDI---LGKHD-APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYS--LSLVGNRLVV  161 (342)
Q Consensus        88 ~~~~~~~~---~~~h~-~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~--~s~~~~~~~~  161 (342)
                      +.+.+...   ..++. ..+...+.++++++|+..+..|.|.+.-..+.  +   .+...+....+..  |+.++..+++
T Consensus       287 le~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~--e---li~s~KieG~v~~~~fsSdsk~l~~  361 (514)
T KOG2055|consen  287 LETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK--E---LITSFKIEGVVSDFTFSSDSKELLA  361 (514)
T ss_pred             ccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh--h---hhheeeeccEEeeEEEecCCcEEEE
Confidence            98887543   33444 46778899999999999999999999875432  1   2333333444444  4445678888


Q ss_pred             EEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhh---hcccceeeeEEecCC
Q 019384          162 ATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAS---QAKKYAFKCHRKSEA  238 (342)
Q Consensus       162 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~---~~~~~~~~~h~~~~~  238 (342)
                      ++++|.|.+||++.......... .-..+.+.++.++++.++++|+..|-|+|  ||.....   .++.  +      ..
T Consensus       362 ~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNI--Yd~~s~~~s~~PkP--i------k~  430 (514)
T KOG2055|consen  362 SGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNI--YDGNSCFASTNPKP--I------KT  430 (514)
T ss_pred             EcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEE--eccchhhccCCCCc--h------hh
Confidence            88999999999998744333222 22235667778899999999999998876  6643221   1110  0      01


Q ss_pred             CCceeeeeeEEEEcCCCCeEEEec--CCCeEEEEeCCCceeeeccCC---CCcceEEEEECCCCCEEEEEEeccccCCCC
Q 019384          239 GRDIVYPVNAIAFHPIYGTFATGG--CDGFVNVWDGNNKKRLYQYSK---YPTSIAALSFSRDGRLLAVASSYTFEEGDK  313 (342)
Q Consensus       239 ~~~~~~~v~~v~~sp~~~~l~sgs--~Dg~I~iWd~~~~~~~~~~~~---~~~~V~~v~~spdg~~las~s~~~~~~~~~  313 (342)
                      -......|+++.|+|+++.||.+|  .+..+|+--+-+...-..++.   -.+.|+||+|||.|-+||+|-.    .|+ 
T Consensus       431 ~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe----~gr-  505 (514)
T KOG2055|consen  431 VDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE----AGR-  505 (514)
T ss_pred             hhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC----CCc-
Confidence            122334699999999999998877  466888887665443333332   2356899999999999999844    345 


Q ss_pred             CCCCCcEEEEEc
Q 019384          314 PHEPDAIFVRSV  325 (342)
Q Consensus       314 ~~~~~~~~~~~~  325 (342)
                            +.||++
T Consensus       506 ------v~l~kL  511 (514)
T KOG2055|consen  506 ------VHLFKL  511 (514)
T ss_pred             ------eeeEee
Confidence                  777766

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=2.4e-21  Score=175.53  Aligned_cols=294  Identities=17%  Similarity=0.181  Sum_probs=195.3

Q ss_pred             EEEEEcCC---CCeEEEEeCCCcEEEEECCCce-------eeeeeecCCceEEEEEeCCC-CeEEEecCCcEEEEEeccC
Q 019384           23 SNLRFSNH---SDHLLVSSWDKSVRLYDASANV-------LRGEFMHGGPVLDCCFHDDS-SGFSASADHTVRRLVFSHG   91 (342)
Q Consensus        23 ~~l~fs~~---~~~l~s~s~Dgti~vwd~~~~~-------~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~   91 (342)
                      ++..|++.   ...|+.+-.||.|.++|.....       +.....|.+.|.++.|.++. ++++++.|.+++.||+.+.
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence            34777763   4568889999999999986432       34445799999999998754 4579999999999999988


Q ss_pred             ce---eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCC--cc---eeeeeec------------------C
Q 019384           92 KE---DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASG--QE---RTLVGTY------------------P  144 (342)
Q Consensus        92 ~~---~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~--~~---~~~~~~~------------------~  144 (342)
                      +.   ..+.+|+..|.+++|.|.+ ..|++|+.||.|.|||++-...  ..   ......+                  .
T Consensus       133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence            73   3478999999999999966 5689999999999999862210  00   0000000                  0


Q ss_pred             CCCc----EEEE-eccCCeEEEEEc-CCeEEEEeCCCCCCcccccc---ccc------ceeeEEEEEeeCCceEEEEccC
Q 019384          145 QPER----VYSL-SLVGNRLVVATA-GRHVNVYDLRNMSQPEQRRE---SSL------KYQTRCVRCYPNGTGYALSSVE  209 (342)
Q Consensus       145 ~~~~----v~~~-s~~~~~~~~~s~-d~~v~iwd~~~~~~~~~~~~---~~~------~~~~~~v~~~~~~~~~~~~s~~  209 (342)
                      ....    |..+ ..+.+.++++++ |+.|++||++..........   ...      ...+.++.....|.++.....|
T Consensus       213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD  292 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD  292 (720)
T ss_pred             ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence            0111    2222 335678998888 99999999997643211110   011      1224556666677777766667


Q ss_pred             CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCce-eeeccCCCCcce
Q 019384          210 GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK-RLYQYSKYPTSI  288 (342)
Q Consensus       210 ~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~-~~~~~~~~~~~V  288 (342)
                      +.|  ++|++..-.......+.++....     .  -..-..+|++.+|++|++|..+++|.+.+.. ....+.+|.-.|
T Consensus       293 ~sI--y~ynm~s~s~sP~~~~sg~~~~s-----f--~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV  363 (720)
T KOG0321|consen  293 NSI--YFYNMRSLSISPVAEFSGKLNSS-----F--YVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV  363 (720)
T ss_pred             CcE--EEEeccccCcCchhhccCcccce-----e--eeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEE
Confidence            765  67998654333333333332210     0  1122468999999999999999999998754 356778999999


Q ss_pred             EEEEECCCCC-EEEEEEeccccCCCCCCCCCcEEEEEccC-CccccCCCC
Q 019384          289 AALSFSRDGR-LLAVASSYTFEEGDKPHEPDAIFVRSVNE-IEVKPKPKA  336 (342)
Q Consensus       289 ~~v~~spdg~-~las~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  336 (342)
                      ++++|.|..- -+|++ ++|+          .+.+|.++. +...+.++.
T Consensus       364 t~V~w~pS~~t~v~Tc-SdD~----------~~kiW~l~~~l~e~~~adk  402 (720)
T KOG0321|consen  364 TTVRWLPSATTPVATC-SDDF----------RVKIWRLSNGLEEIYAADK  402 (720)
T ss_pred             EEEeeccccCCCceee-ccCc----------ceEEEeccCchhhcccccc
Confidence            9999977433 34455 4441          467777753 444444443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3.1e-20  Score=169.43  Aligned_cols=268  Identities=15%  Similarity=0.153  Sum_probs=197.6

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeec---CCceEEEEEeCCCCeEEEecCCcEEEEEeccCcee-
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMH---GGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKED-   94 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h---~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~-   94 (342)
                      ..+|.++||+.+++.||.+-.||+|.||++..+-......|   ...|.+++|.+++++++.+.+|+|.-||+.+.+.. 
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~  104 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKY  104 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeE
Confidence            57999999999999999999999999999987654333323   45799999999999999999999999999988754 


Q ss_pred             ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeec-CCCCcEEEEeccCC--eEEEEEcCCeEEEE
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTY-PQPERVYSLSLVGN--RLVVATAGRHVNVY  171 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~-~~~~~v~~~s~~~~--~~~~~s~d~~v~iw  171 (342)
                      .+..-.+.|++++.+|.++.++.|+.||.+..++...+...   ..... ..+.++++++++++  .++.|+.||.|++|
T Consensus       105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~---~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw  181 (691)
T KOG2048|consen  105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT---YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW  181 (691)
T ss_pred             EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE---EEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence            45556689999999999999999999998777776533221   11122 23467888888765  57999999999999


Q ss_pred             eCCCCCCccccc--ccc----cceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384          172 DLRNMSQPEQRR--ESS----LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP  245 (342)
Q Consensus       172 d~~~~~~~~~~~--~~~----~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~  245 (342)
                      |+..+.......  .-.    -+.-+.+|.+..++ .++++...|+  ++|||...+...  ..+.+|..         .
T Consensus       182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~--V~FWd~~~gTLi--qS~~~h~a---------d  247 (691)
T KOG2048|consen  182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT--VTFWDSIFGTLI--QSHSCHDA---------D  247 (691)
T ss_pred             EcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce--EEEEcccCcchh--hhhhhhhc---------c
Confidence            998764332100  001    11224456666554 3666655565  578998655433  33455554         3


Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEEeCCCcee----eeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKR----LYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~----~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                      |.|++..+++.++++++.|+.|.-+...+.+.    ......|...|.+++..++  .|.+|+.
T Consensus       248 Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~  309 (691)
T KOG2048|consen  248 VLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGR  309 (691)
T ss_pred             eeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecce
Confidence            89999999999999999999999998765533    2234568889999999987  5555654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2.6e-20  Score=156.30  Aligned_cols=231  Identities=17%  Similarity=0.219  Sum_probs=166.9

Q ss_pred             cCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeC--CCcEEEEcCCCCCC
Q 019384           59 HGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSW--DKSLKCWDPRGASG  134 (342)
Q Consensus        59 h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~--D~~I~iWd~~~~~~  134 (342)
                      -.+.|.++.|++++.. ++++.|.++++||...+.. ..+..+.-.|..+.|......++.++.  |.+||..++.....
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            4678999999977765 5778888999999988774 455555567888888877777766666  89999999875322


Q ss_pred             cceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeE
Q 019384          135 QERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRV  212 (342)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~  212 (342)
                        ...+..  |...|.+++.  -++.+++++.|++|++||+|..+........    .....++.|+|-.+|++...+  
T Consensus        93 --lRYF~G--H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~----~~pi~AfDp~GLifA~~~~~~--  162 (311)
T KOG1446|consen   93 --LRYFPG--HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS----GRPIAAFDPEGLIFALANGSE--  162 (311)
T ss_pred             --EEEcCC--CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC----CCcceeECCCCcEEEEecCCC--
Confidence              122222  3455655554  4679999999999999999965443222111    234567999999999888776  


Q ss_pred             EEEEeechhhhh-cc-cceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcce--
Q 019384          213 AMEFFDLSEASQ-AK-KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSI--  288 (342)
Q Consensus       213 ~i~~~d~~~~~~-~~-~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V--  288 (342)
                      .|++||.+.-.. +. .+.+..        ...-..+.+.|||||+.++.+...+.+++.|.-+|..+.++.+++..-  
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~--------~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~  234 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITD--------NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL  234 (311)
T ss_pred             eEEEEEecccCCCCceeEccCC--------CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence            457799875321 11 122211        001136789999999999999999999999999998888887776533  


Q ss_pred             -EEEEECCCCCEEEEEEecc
Q 019384          289 -AALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       289 -~~v~~spdg~~las~s~~~  307 (342)
                       -+..|+|||+++.+|+.++
T Consensus       235 ~~~a~ftPds~Fvl~gs~dg  254 (311)
T KOG1446|consen  235 PLSATFTPDSKFVLSGSDDG  254 (311)
T ss_pred             ceeEEECCCCcEEEEecCCC
Confidence             6889999999999888754

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=8.8e-21  Score=158.38  Aligned_cols=248  Identities=16%  Similarity=0.220  Sum_probs=161.7

Q ss_pred             CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC--cee---eeeeecCCceEEEEEe-C-CCC-eEEEecCCcEEEE
Q 019384           15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA--NVL---RGEFMHGGPVLDCCFH-D-DSS-GFSASADHTVRRL   86 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~--~~~---~~~~~h~~~V~~~~~~-~-~~~-~~s~s~D~~i~~w   86 (342)
                      -..|.+-|+++.|+..|+++||||.|++++|||...  +..   -.-..|.+.|..+.|. | =++ +++||.|+++.+|
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            357888999999999999999999999999999643  222   2235799999999996 3 244 4699999999999


Q ss_pred             EeccCc----------eeecccCCcceeEEEEeCC--CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec
Q 019384           87 VFSHGK----------EDILGKHDAPVRCIEYSYA--AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL  154 (342)
Q Consensus        87 ~~~~~~----------~~~~~~h~~~V~~~~~~~~--~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~  154 (342)
                      .=....          ...+..-...|+.+.|.|.  |-.+++++.||++|||+.-......+..+.   ++...+ .++
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq---~Ei~~~-~~p  164 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ---HEIQNV-IDP  164 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh---hhhhhc-cCC
Confidence            642111          1235566788999999985  446899999999999985321111111111   111000 000


Q ss_pred             cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeC---CceEEEEccC-----CeEEEEEeechhhhh--
Q 019384          155 VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN---GTGYALSSVE-----GRVAMEFFDLSEASQ--  224 (342)
Q Consensus       155 ~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~s~~-----~~~~i~~~d~~~~~~--  224 (342)
                      -++                             ....-.||+|.|.   .+.+++++.+     +++  ++|...+...  
T Consensus       165 p~~-----------------------------~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~--~Iye~~e~~rKw  213 (361)
T KOG2445|consen  165 PGK-----------------------------NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKV--KIYEYNENGRKW  213 (361)
T ss_pred             ccc-----------------------------ccCcceEEeeccccccCceEEEEcccCCccccce--EEEEecCCccee
Confidence            000                             0011234444432   2446666654     233  3455433221  


Q ss_pred             cccceeeeEEecCCCCceeeeeeEEEEcCC----CCeEEEecCCCeEEEEeCCC--------------------ceeeec
Q 019384          225 AKKYAFKCHRKSEAGRDIVYPVNAIAFHPI----YGTFATGGCDGFVNVWDGNN--------------------KKRLYQ  280 (342)
Q Consensus       225 ~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~----~~~l~sgs~Dg~I~iWd~~~--------------------~~~~~~  280 (342)
                      .+.-.+.         ++.-+|..++|.|+    ...||+++.|| |+||.+..                    -+.+..
T Consensus       214 ~kva~L~---------d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~  283 (361)
T KOG2445|consen  214 LKVAELP---------DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE  283 (361)
T ss_pred             eeehhcC---------CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee
Confidence            1111222         33348999999997    34689999999 99998762                    023456


Q ss_pred             cCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          281 YSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       281 ~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      +.+|+..|+.++|+-.|..|++.+.++
T Consensus       284 ~~~H~~~VWrv~wNmtGtiLsStGdDG  310 (361)
T KOG2445|consen  284 LDDHNGEVWRVRWNMTGTILSSTGDDG  310 (361)
T ss_pred             ccCCCCceEEEEEeeeeeEEeecCCCc
Confidence            779999999999999999999888765

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.88  E-value=6e-20  Score=162.94  Aligned_cols=258  Identities=15%  Similarity=0.048  Sum_probs=169.8

Q ss_pred             CCeEEEEEcCCCCeE-EEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EE-EecCCcEEEEEeccCceeec
Q 019384           20 DGISNLRFSNHSDHL-LVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FS-ASADHTVRRLVFSHGKEDIL   96 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l-~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s-~s~D~~i~~w~~~~~~~~~~   96 (342)
                      ..+..++|+|+++.+ ++++.|++|++||..+++....+.....+..++|++++.. +. ++.|+.+++||+.+.+....
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~  110 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE  110 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence            457789999999876 5677899999999988766554433344567888877664 33 45688999999987653322


Q ss_pred             ccCCcceeEEEEeCCCCEEEEeeCCC-cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEE-EcCCeEEEEeCC
Q 019384           97 GKHDAPVRCIEYSYAAGQVITGSWDK-SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVA-TAGRHVNVYDLR  174 (342)
Q Consensus        97 ~~h~~~V~~~~~~~~~~~l~sgs~D~-~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~-s~d~~v~iwd~~  174 (342)
                      ..+...+.+++|+|+++.+++++.++ .+.+||.++....  .... .........++.++..++++ ..++.|++||+.
T Consensus       111 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~--~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~  187 (300)
T TIGR03866       111 IPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV--DNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVA  187 (300)
T ss_pred             eeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE--EEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcC
Confidence            22334568899999999999888775 4677897653221  1111 11222334566677766544 458899999998


Q ss_pred             CCCCccccccc--c---cceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384          175 NMSQPEQRRES--S---LKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA  248 (342)
Q Consensus       175 ~~~~~~~~~~~--~---~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  248 (342)
                      +.+........  .   .......++++|+++.++++. .++.  +.+||..+......  +. +         ...+.+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~--i~v~d~~~~~~~~~--~~-~---------~~~~~~  253 (300)
T TIGR03866       188 TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR--VAVVDAKTYEVLDY--LL-V---------GQRVWQ  253 (300)
T ss_pred             cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe--EEEEECCCCcEEEE--EE-e---------CCCcce
Confidence            76432111100  0   011234577899998765543 3333  56788854321111  11 1         114778


Q ss_pred             EEEcCCCCeEEEe-cCCCeEEEEeCCCceeeeccCCCCcceEEEEECC
Q 019384          249 IAFHPIYGTFATG-GCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSR  295 (342)
Q Consensus       249 v~~sp~~~~l~sg-s~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~sp  295 (342)
                      ++|+|+|++|+++ +.+++|++||.++++.+..++.. ...+.++|+|
T Consensus       254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            9999999999876 56999999999999988877643 5569999876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.7e-21  Score=169.40  Aligned_cols=260  Identities=17%  Similarity=0.172  Sum_probs=182.9

Q ss_pred             eEEEE-eCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCeEEEe-cCCcEEEEEeccCce-eecccCCcceeEEEE
Q 019384           33 HLLVS-SWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSGFSAS-ADHTVRRLVFSHGKE-DILGKHDAPVRCIEY  108 (342)
Q Consensus        33 ~l~s~-s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~~s~s-~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~  108 (342)
                      +++++ ..--.+-+|.+.... ......-.++|.++.-++.+.++.|| -.+.+.+|.+.++.. ..+.+|-..|+|+.|
T Consensus        52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f  131 (476)
T KOG0646|consen   52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF  131 (476)
T ss_pred             heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE
Confidence            55554 344567778775432 22233456789999988988887776 899999999999984 456889999999999


Q ss_pred             eCCCCEEEEeeCCCcEEEEcCCC-------CCCcceeeeeecCCCCcEEEEecc----CCeEEEEEcCCeEEEEeCCCCC
Q 019384          109 SYAAGQVITGSWDKSLKCWDPRG-------ASGQERTLVGTYPQPERVYSLSLV----GNRLVVATAGRHVNVYDLRNMS  177 (342)
Q Consensus       109 ~~~~~~l~sgs~D~~I~iWd~~~-------~~~~~~~~~~~~~~~~~v~~~s~~----~~~~~~~s~d~~v~iwd~~~~~  177 (342)
                      +.|+..|+|||.||.|.+|.+-.       ....+...+.  .|.-.|..+-..    ..++++++.|.++|+||+..+.
T Consensus       132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~--~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~  209 (476)
T KOG0646|consen  132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS--DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV  209 (476)
T ss_pred             eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec--cCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence            99999999999999999997531       1111111111  234445555443    1379999999999999998764


Q ss_pred             CcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhc----ccceeeeEEecCCCCceee--eeeEEEE
Q 019384          178 QPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQA----KKYAFKCHRKSEAGRDIVY--PVNAIAF  251 (342)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~----~~~~~~~h~~~~~~~~~~~--~v~~v~~  251 (342)
                      ..   ....++..+.+++..|-...+.+|+.+|.+.+..+........    +.+.... .+.....++.+  +|+|++.
T Consensus       210 LL---lti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~-t~~~~~~Gh~~~~~ITcLai  285 (476)
T KOG0646|consen  210 LL---LTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEEN-TQINVLVGHENESAITCLAI  285 (476)
T ss_pred             ee---EEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccccc-ceeeeeccccCCcceeEEEE
Confidence            32   2223455678999999999999999999876533222110000    1110000 00001123333  8999999


Q ss_pred             cCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCC
Q 019384          252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGR  298 (342)
Q Consensus       252 sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~  298 (342)
                      +-||..|++|+.||.|.|||+.+.++++++....++|+-+.+.|=-+
T Consensus       286 s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  286 STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             ecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence            99999999999999999999999999998887889999999977544

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.88  E-value=1.3e-20  Score=156.62  Aligned_cols=286  Identities=13%  Similarity=0.123  Sum_probs=198.3

Q ss_pred             CCCccCCCCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCce------e----------eeeeecCCceEEEEEeC-
Q 019384            9 TSGRELGNPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANV------L----------RGEFMHGGPVLDCCFHD-   70 (342)
Q Consensus         9 ~~~~~~~~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~------~----------~~~~~h~~~V~~~~~~~-   70 (342)
                      ++++..-.+|.++|++|...+ +|++++||+.||.|-|||+++..      +          ....+|+-.|.++.|.| 
T Consensus        33 n~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~  112 (397)
T KOG4283|consen   33 NNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI  112 (397)
T ss_pred             cCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee
Confidence            445555678999999999998 78999999999999999986421      1          11235777899999864 


Q ss_pred             -CCCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCC---CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCC
Q 019384           71 -DSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYA---AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQP  146 (342)
Q Consensus        71 -~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~  146 (342)
                       .+-+.++|.|.++++||..+-++..--.-.+.|++-+++|-   ..+||+|..|-.|++-|+.++..  ...+..  +.
T Consensus       113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~--sH~LsG--Hr  188 (397)
T KOG4283|consen  113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF--SHTLSG--HR  188 (397)
T ss_pred             cCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc--eeeecc--cc
Confidence             33445889999999999988775433334566777778773   35788899999999999987543  223333  34


Q ss_pred             CcEEEEeccCC---eEEEEEcCCeEEEEeCCCCCC-------------cccccccccceeeEEEEEeeCCceEEEEccCC
Q 019384          147 ERVYSLSLVGN---RLVVATAGRHVNVYDLRNMSQ-------------PEQRRESSLKYQTRCVRCYPNGTGYALSSVEG  210 (342)
Q Consensus       147 ~~v~~~s~~~~---~~~~~s~d~~v~iwd~~~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~  210 (342)
                      ..|.++++++.   .++++++|+.||+||+|..+-             +..+...++...++.+++..++..+++...|.
T Consensus       189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~  268 (397)
T KOG4283|consen  189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD  268 (397)
T ss_pred             CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence            55666666553   578999999999999986421             11111233445678899999999999998888


Q ss_pred             eEEEEEeechhhhh-cccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceE
Q 019384          211 RVAMEFFDLSEASQ-AKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIA  289 (342)
Q Consensus       211 ~~~i~~~d~~~~~~-~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~  289 (342)
                      +++  +|+...... .+.+.-..|++......+   |.    +.+...++---.|+++.++.+-.+..++.+..|-..|.
T Consensus       269 r~r--~wn~~~G~ntl~~~g~~~~n~~~~~~~~---~~----~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~  339 (397)
T KOG4283|consen  269 RIR--VWNMESGRNTLREFGPIIHNQTTSFAVH---IQ----SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRIN  339 (397)
T ss_pred             ceE--EeecccCcccccccccccccccccceEE---Ee----ecccceEEEEecCCeEEEEEccCceEEEeeecccceee
Confidence            765  588654332 223333334332211111   22    22333333334568899999888888988999988999


Q ss_pred             EEEECCCCCEEEEEEecc
Q 019384          290 ALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       290 ~v~~spdg~~las~s~~~  307 (342)
                      |.+|-||=+..-+++.+.
T Consensus       340 c~~~~~~fq~~~tg~~d~  357 (397)
T KOG4283|consen  340 CAAYRPDFEQCFTGDMNG  357 (397)
T ss_pred             EEeecCchhhhhccccCC
Confidence            999999988777777654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=3.6e-22  Score=183.08  Aligned_cols=233  Identities=21%  Similarity=0.290  Sum_probs=180.3

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc-ee
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK-ED   94 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~-~~   94 (342)
                      |+..|.++..-..++.+++|+.|..+-||.+.... +..+.+|..+|.++.|..+..+ .+|+.||+|++||++..+ .+
T Consensus        27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr  106 (825)
T KOG0267|consen   27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR  106 (825)
T ss_pred             hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh
Confidence            57788888887778899999999999999987654 3445789999999999865554 578899999999998776 56


Q ss_pred             ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCC
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLR  174 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~  174 (342)
                      .+.+|...+.+++|+|-+.++++||.|.-+++||.+...+  ......+.....+..|+++|..++.++.|.++++||+.
T Consensus       107 tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc--~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~  184 (825)
T KOG0267|consen  107 TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC--SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT  184 (825)
T ss_pred             hhhccccCcceeeeccceEEeccccccccceehhhhccCc--eeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc
Confidence            8899999999999999999999999999999999873222  12222222233445566666667777777777777765


Q ss_pred             CCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC
Q 019384          175 NMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI  254 (342)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~  254 (342)
                      .++..                                                ..+..|.         +.+.++-|||.
T Consensus       185 agk~~------------------------------------------------~ef~~~e---------~~v~sle~hp~  207 (825)
T KOG0267|consen  185 AGKLS------------------------------------------------KEFKSHE---------GKVQSLEFHPL  207 (825)
T ss_pred             ccccc------------------------------------------------ccccccc---------ccccccccCch
Confidence            43210                                                0111221         14667779998


Q ss_pred             CCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecccc
Q 019384          255 YGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFE  309 (342)
Q Consensus       255 ~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~  309 (342)
                      .-.+++||.|++|++||+++...+.........|.+++|+|||+.+++|...-..
T Consensus       208 e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  208 EVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS  262 (825)
T ss_pred             hhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence            8889999999999999999988888777778899999999999999999875444

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.87  E-value=1.7e-20  Score=171.45  Aligned_cols=234  Identities=16%  Similarity=0.157  Sum_probs=172.0

Q ss_pred             cCCCCCCCCeEE-EEEcC-CCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEec
Q 019384           13 ELGNPPSDGISN-LRFSN-HSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFS   89 (342)
Q Consensus        13 ~~~~~~~~~V~~-l~fs~-~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~   89 (342)
                      +....|.+.|.. ++|.+ ++-+|++|+.|++|.||...+.. +..+.+|++.|.++.-..++.++++|.|.++++|-..
T Consensus        51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~  130 (745)
T KOG0301|consen   51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG  130 (745)
T ss_pred             eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecch
Confidence            334567777877 88885 66679999999999999998765 4456789999999987777779999999999999765


Q ss_pred             cCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC-CeEEEEEcCCeE
Q 019384           90 HGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG-NRLVVATAGRHV  168 (342)
Q Consensus        90 ~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~-~~~~~~s~d~~v  168 (342)
                      .-. ..+.+|+..|++++.-|++ .++|||.|++||+|.-.+  . . ..+..  |...|..+..-+ ..|++|+.||.|
T Consensus       131 ~l~-~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~--~-l-~tf~g--HtD~VRgL~vl~~~~flScsNDg~I  202 (745)
T KOG0301|consen  131 ELV-YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT--L-L-KTFSG--HTDCVRGLAVLDDSHFLSCSNDGSI  202 (745)
T ss_pred             hhh-cccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc--h-h-hhhcc--chhheeeeEEecCCCeEeecCCceE
Confidence            432 2378999999999999977 899999999999997421  1 1 12222  445566676644 489999999999


Q ss_pred             EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384          169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA  248 (342)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  248 (342)
                      ++|++.. ....  ....+...+.+++...+++.+++++.|++++|  |+..+..+...     |+.        ..|.+
T Consensus       203 r~w~~~g-e~l~--~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlri--W~~~e~~q~I~-----lPt--------tsiWs  264 (745)
T KOG0301|consen  203 RLWDLDG-EVLL--EMHGHTNFVYSISMALSDGLIVSTGEDRTLRI--WKKDECVQVIT-----LPT--------TSIWS  264 (745)
T ss_pred             EEEeccC-ceee--eeeccceEEEEEEecCCCCeEEEecCCceEEE--eecCceEEEEe-----cCc--------cceEE
Confidence            9999943 2322  22334445667776677788999999998755  77643222211     111        14777


Q ss_pred             EEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          249 IAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       249 v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      +.+=++|. +++|+.||.||||..+
T Consensus       265 a~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  265 AKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEEeeCCC-EEEeccCceEEEEEec
Confidence            77777665 7788899999999755

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.87  E-value=3.4e-19  Score=157.73  Aligned_cols=257  Identities=16%  Similarity=0.234  Sum_probs=181.2

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce--eec
Q 019384           20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE--DIL   96 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~--~~~   96 (342)
                      .-|.+++|.++|+. +||..+|+|.||+..+.++ +...+|.+.|.+++...++.+++|+.|..|..||-.-.+.  ..+
T Consensus       247 k~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~el  325 (626)
T KOG2106|consen  247 KFVLCVTFLENGDV-ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETEL  325 (626)
T ss_pred             eEEEEEEEcCCCCE-EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccC
Confidence            68999999999865 5999999999999976553 3445899999999999999999999999999999433332  234


Q ss_pred             ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEEEeCC
Q 019384           97 GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLR  174 (342)
Q Consensus        97 ~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~  174 (342)
                      ....+.|+.++=.. ++ |+.|..-+.|--=.++.+..  . ....  +......+..  +.+.+++++.|+.+++|+- 
T Consensus       326 Pe~~G~iRtv~e~~-~d-i~vGTtrN~iL~Gt~~~~f~--~-~v~g--h~delwgla~hps~~q~~T~gqdk~v~lW~~-  397 (626)
T KOG2106|consen  326 PEQFGPIRTVAEGK-GD-ILVGTTRNFILQGTLENGFT--L-TVQG--HGDELWGLATHPSKNQLLTCGQDKHVRLWND-  397 (626)
T ss_pred             chhcCCeeEEecCC-Cc-EEEeeccceEEEeeecCCce--E-EEEe--cccceeeEEcCCChhheeeccCcceEEEccC-
Confidence            44556788876443 22 77777666665444443322  1 1222  2233444544  4568999999999999992 


Q ss_pred             CCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC
Q 019384          175 NMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI  254 (342)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~  254 (342)
                       .+....+   .+.....|+.|+|.| .++++...|.-  .++|....     ..+..|..       ..++++|+|+|+
T Consensus       398 -~k~~wt~---~~~d~~~~~~fhpsg-~va~Gt~~G~w--~V~d~e~~-----~lv~~~~d-------~~~ls~v~ysp~  458 (626)
T KOG2106|consen  398 -HKLEWTK---IIEDPAECADFHPSG-VVAVGTATGRW--FVLDTETQ-----DLVTIHTD-------NEQLSVVRYSPD  458 (626)
T ss_pred             -CceeEEE---EecCceeEeeccCcc-eEEEeeccceE--EEEecccc-----eeEEEEec-------CCceEEEEEcCC
Confidence             1111111   233456789999999 88999888864  34666431     11233332       137999999999


Q ss_pred             CCeEEEecCCCeEEEEeCCC-cee---eeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          255 YGTFATGGCDGFVNVWDGNN-KKR---LYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       255 ~~~l~sgs~Dg~I~iWd~~~-~~~---~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      |.+||.|+.|+.|+||-+.. +..   +....+  ++|..+.||+|+++|.+-|.+
T Consensus       459 G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d  512 (626)
T KOG2106|consen  459 GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGD  512 (626)
T ss_pred             CCEEEEecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceEEeccCc
Confidence            99999999999999998764 322   233334  799999999999999987764

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.87  E-value=6.7e-19  Score=155.86  Aligned_cols=273  Identities=15%  Similarity=0.158  Sum_probs=194.4

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee-----cCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-----HGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~-----h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~   93 (342)
                      .+.|....|.|-...|+....-+.+.+|+..++.+....+     .+.-|.|++|.+++.+++|-.+|.|.+|+..+.+.
T Consensus       200 ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~  279 (626)
T KOG2106|consen  200 NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRI  279 (626)
T ss_pred             cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceE
Confidence            3577889999977666666677889999998765433221     23679999999999999999999999999866552


Q ss_pred             -eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384           94 -DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD  172 (342)
Q Consensus        94 -~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd  172 (342)
                       +....|.+.|.+++.-.+| .|+||+.|+.|..||-. -.+.....+  .+....+..+......|++++..+.|..=.
T Consensus       280 ~k~~~aH~ggv~~L~~lr~G-tllSGgKDRki~~Wd~~-y~k~r~~el--Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt  355 (626)
T KOG2106|consen  280 SKQVHAHDGGVFSLCMLRDG-TLLSGGKDRKIILWDDN-YRKLRETEL--PEQFGPIRTVAEGKGDILVGTTRNFILQGT  355 (626)
T ss_pred             EeEeeecCCceEEEEEecCc-cEeecCccceEEecccc-ccccccccC--chhcCCeeEEecCCCcEEEeeccceEEEee
Confidence             2233899999999998877 46779999999999932 111111111  112233444555433477788777666555


Q ss_pred             CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384          173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH  252 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  252 (342)
                      +.+.-..   ...........++.+|+...+++++.|+.+.+  |+-    ....|...          ...++.|+.|+
T Consensus       356 ~~~~f~~---~v~gh~delwgla~hps~~q~~T~gqdk~v~l--W~~----~k~~wt~~----------~~d~~~~~~fh  416 (626)
T KOG2106|consen  356 LENGFTL---TVQGHGDELWGLATHPSKNQLLTCGQDKHVRL--WND----HKLEWTKI----------IEDPAECADFH  416 (626)
T ss_pred             ecCCceE---EEEecccceeeEEcCCChhheeeccCcceEEE--ccC----CceeEEEE----------ecCceeEeecc
Confidence            5543221   11122234567888999999999999998765  872    12222211          12368899999


Q ss_pred             CCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          253 PIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       253 p~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      |.| .+|.|...|.-.+.|.++...++.... ..++.+|+|||||.+||+||-+.           .|.+|.+++
T Consensus       417 psg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~-----------~iyiy~Vs~  478 (626)
T KOG2106|consen  417 PSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDN-----------HIYIYRVSA  478 (626)
T ss_pred             Ccc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCC-----------eEEEEEECC
Confidence            999 999999999999999999777665555 78999999999999999999765           466666554

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.86  E-value=3.7e-20  Score=177.05  Aligned_cols=244  Identities=18%  Similarity=0.191  Sum_probs=170.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC----------c---------eeeeeeecCCceEEEEEeCCCCe-E
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA----------N---------VLRGEFMHGGPVLDCCFHDDSSG-F   75 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~----------~---------~~~~~~~h~~~V~~~~~~~~~~~-~   75 (342)
                      ..|...|+|++|++||.+||+||.|+.|.||+...          +         ......+|.+.|.+++|+|++.+ +
T Consensus        66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv  145 (942)
T KOG0973|consen   66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV  145 (942)
T ss_pred             ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEE
Confidence            57889999999999999999999999999999762          0         12334579999999999987765 6


Q ss_pred             EEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC---CCCc--E
Q 019384           76 SASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP---QPER--V  149 (342)
Q Consensus        76 s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~---~~~~--v  149 (342)
                      ++|.|++|.+|+..+.+ ...+.+|...|..+.|.|-|++|+|-+.|++|++|.+.. .+....+-..++   ..-.  .
T Consensus       146 S~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~T~f~R  224 (942)
T KOG0973|consen  146 SVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLTTFFLR  224 (942)
T ss_pred             EecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc-ceeeEeeccchhhCCCcceeee
Confidence            99999999999988775 457899999999999999999999999999999999643 221111111111   1111  2


Q ss_pred             EEEeccCCeEEEEEcC----CeEEEEeCCCCCCcccccccccceeeEEEEEeeC-----Cc------------eEEEEcc
Q 019384          150 YSLSLVGNRLVVATAG----RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN-----GT------------GYALSSV  208 (342)
Q Consensus       150 ~~~s~~~~~~~~~s~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~------------~~~~~s~  208 (342)
                      .+++++|++|++..+=    .++.|.+-.+-+...  ....+...++++.|.|.     .+            .+++|+.
T Consensus       225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~--~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq  302 (942)
T KOG0973|consen  225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDK--DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ  302 (942)
T ss_pred             cccCCCcCeecchhhccCCcceeEEEecCCceeee--eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence            3456667777765332    246665533221111  11223345677777641     11            4678888


Q ss_pred             CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384          209 EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       209 ~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~  274 (342)
                      |+.+.|  |...... +   .+..|.-..      .+|..++|+|||-.|..||.||+|.+...+.
T Consensus       303 DrSlSV--W~T~~~R-P---l~vi~~lf~------~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  303 DRSLSV--WNTALPR-P---LFVIHNLFN------KSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             CccEEE--EecCCCC-c---hhhhhhhhc------CceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence            888765  7763221 1   122232211      2689999999999999999999999998763

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=3.7e-21  Score=163.77  Aligned_cols=226  Identities=19%  Similarity=0.201  Sum_probs=166.2

Q ss_pred             eeecCCceEEEEEeCCC--CeEEEecCCcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCC
Q 019384           56 EFMHGGPVLDCCFHDDS--SGFSASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA  132 (342)
Q Consensus        56 ~~~h~~~V~~~~~~~~~--~~~s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~  132 (342)
                      +.+|.++|.+++=.|..  .+++|+.||.|++|++.+..+ ..+..|.+.|+.|++..  ..++|++.|++||.|..+..
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~  139 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP  139 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC
Confidence            34799999999987664  468999999999999999874 57889999999999976  67999999999999987642


Q ss_pred             CCcceeeeeecCCCCcEEEEecc--CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce-EEEEccC
Q 019384          133 SGQERTLVGTYPQPERVYSLSLV--GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG-YALSSVE  209 (342)
Q Consensus       133 ~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~s~~  209 (342)
                        .    ...+.....+..++..  .+.++++  +..|.|||.... .|.+...... ..+.++++.|.-.. ++++..|
T Consensus       140 --p----~~tilg~s~~~gIdh~~~~~~FaTc--Ge~i~IWD~~R~-~Pv~smswG~-Dti~svkfNpvETsILas~~sD  209 (433)
T KOG0268|consen  140 --P----LHTILGKSVYLGIDHHRKNSVFATC--GEQIDIWDEQRD-NPVSSMSWGA-DSISSVKFNPVETSILASCASD  209 (433)
T ss_pred             --c----ceeeecccccccccccccccccccc--CceeeecccccC-CccceeecCC-CceeEEecCCCcchheeeeccC
Confidence              1    1111112223344443  2344444  446999998654 3333332222 23677888886554 4555577


Q ss_pred             CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCce-eeeccCCCCcce
Q 019384          210 GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK-RLYQYSKYPTSI  288 (342)
Q Consensus       210 ~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~-~~~~~~~~~~~V  288 (342)
                      +.+  .+||.++++..++..+..            .-+.++|+|..-.+++|++|..++.+|.+..+ .+..+.+|.+.|
T Consensus       210 rsI--vLyD~R~~~Pl~KVi~~m------------RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV  275 (433)
T KOG0268|consen  210 RSI--VLYDLRQASPLKKVILTM------------RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV  275 (433)
T ss_pred             Cce--EEEecccCCccceeeeec------------cccceecCccccceeeccccccceehhhhhhcccchhhcccceeE
Confidence            765  569999877665544332            35789999977788999999999999998754 577889999999


Q ss_pred             EEEEECCCCCEEEEEEecc
Q 019384          289 AALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       289 ~~v~~spdg~~las~s~~~  307 (342)
                      .+++|||.|+-+++||.+.
T Consensus       276 ~dVdfsptG~EfvsgsyDk  294 (433)
T KOG0268|consen  276 MDVDFSPTGQEFVSGSYDK  294 (433)
T ss_pred             EEeccCCCcchhccccccc
Confidence            9999999999999999754

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=5.7e-21  Score=176.48  Aligned_cols=259  Identities=17%  Similarity=0.139  Sum_probs=181.9

Q ss_pred             cCCCCCCCccCCCCC-------CCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCC---ceee-eeeecCCceEEEEEe--
Q 019384            4 VHPPPTSGRELGNPP-------SDGISNLRFSN-HSDHLLVSSWDKSVRLYDASA---NVLR-GEFMHGGPVLDCCFH--   69 (342)
Q Consensus         4 ~~~~~~~~~~~~~~~-------~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~---~~~~-~~~~h~~~V~~~~~~--   69 (342)
                      |.+||....+-++-.       .-.+..|.|.. +.++|||++..|.|-+||+..   .+++ .+..|+-.+.+++|+  
T Consensus        65 yai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~t  144 (839)
T KOG0269|consen   65 YAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHST  144 (839)
T ss_pred             EeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccC
Confidence            345555555544322       11344677775 468899999999999999976   3333 334699999999997  


Q ss_pred             CCCCeEEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCC-CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC
Q 019384           70 DDSSGFSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYA-AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE  147 (342)
Q Consensus        70 ~~~~~~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~-~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~  147 (342)
                      ....+++||.|++|+.||++..+ ..++.+-...|+.+.|+|. +..|+++...|.+++||+|...... ..+..|  ..
T Consensus       145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~-~k~~AH--~G  221 (839)
T KOG0269|consen  145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE-KKLTAH--NG  221 (839)
T ss_pred             CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH-HHhhcc--cC
Confidence            34567899999999999998776 4566677788999999994 5789999999999999998654322 223333  44


Q ss_pred             cEEEEeccC--CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce-EEEEccCCeEEEEEeechhhhh
Q 019384          148 RVYSLSLVG--NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG-YALSSVEGRVAMEFFDLSEASQ  224 (342)
Q Consensus       148 ~v~~~s~~~--~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~s~~~~~~i~~~d~~~~~~  224 (342)
                      .+.++++++  ..|++|+.|+.|+|||+.+.... ..........+.+|+|-|..++ +++++.-++-.|++||++....
T Consensus       222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~-~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI  300 (839)
T KOG0269|consen  222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK-PKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI  300 (839)
T ss_pred             ceEEEeecCCCceeeecCCCccEEEEeccCCCcc-ceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc
Confidence            566666654  58999999999999999764322 1112223345788999998664 6777776666788999975433


Q ss_pred             cccceeeeEEecCCCCceeeeeeEEEEcC-CCCeEEEecCCCeEEEEeCCCce
Q 019384          225 AKKYAFKCHRKSEAGRDIVYPVNAIAFHP-IYGTFATGGCDGFVNVWDGNNKK  276 (342)
Q Consensus       225 ~~~~~~~~h~~~~~~~~~~~~v~~v~~sp-~~~~l~sgs~Dg~I~iWd~~~~~  276 (342)
                      +. ..+..|..         .+..++|-. |...|.+++.||+|..--.++..
T Consensus       301 P~-~t~~eH~~---------~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  301 PY-ATFLEHTD---------SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             cc-eeeeccCc---------cccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence            32 23444543         366778743 45678999999998776665543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=5.5e-21  Score=171.09  Aligned_cols=253  Identities=19%  Similarity=0.237  Sum_probs=172.4

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc---------eeeeeeecCCceEEEEEeCC-CCeEEEecCCcEEEE
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN---------VLRGEFMHGGPVLDCCFHDD-SSGFSASADHTVRRL   86 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~---------~~~~~~~h~~~V~~~~~~~~-~~~~s~s~D~~i~~w   86 (342)
                      -|-+.|++++|.+-...|++++.||++++|+++..         .+.+..+|.++|.|++++.. ...++|+.||+|+.|
T Consensus       292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w  371 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW  371 (577)
T ss_pred             cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence            46789999999999999999999999999999321         25667799999999999854 456899999999999


Q ss_pred             EeccCc-----------eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc
Q 019384           87 VFSHGK-----------EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV  155 (342)
Q Consensus        87 ~~~~~~-----------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~  155 (342)
                      .+....           ...+.||++.|+.+++++...+|+++|.|||+++|+......   ..+..........++++.
T Consensus       372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~---~~f~~~~e~g~Plsvd~~  448 (577)
T KOG0642|consen  372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP---CTFGEPKEHGYPLSVDRT  448 (577)
T ss_pred             ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc---cccCCccccCCcceEeec
Confidence            664211           135789999999999999888999999999999999753322   112222222223344443


Q ss_pred             CCeEEEEEcCCeEEEEeCCCCCCccc--ccc-cc-----cceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccc
Q 019384          156 GNRLVVATAGRHVNVYDLRNMSQPEQ--RRE-SS-----LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK  227 (342)
Q Consensus       156 ~~~~~~~s~d~~v~iwd~~~~~~~~~--~~~-~~-----~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~  227 (342)
                      ...++...++...+.+++.+......  ... ..     ...+++.+..+|.....+++-.+..+  +++|.....  ..
T Consensus       449 ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~I--r~~dn~~~~--~l  524 (577)
T KOG0642|consen  449 SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSI--RFFDNKTGK--IL  524 (577)
T ss_pred             cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCce--ecccccccc--cc
Confidence            33322223333333333322211100  000 00     11235667788888777777777765  568764432  23


Q ss_pred             ceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCC
Q 019384          228 YAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYP  285 (342)
Q Consensus       228 ~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~  285 (342)
                      .....|..         .++++++.|+|.+|++|+.|+.+++|......++.....|+
T Consensus       525 ~s~~a~~~---------svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  525 HSMVAHKD---------SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             hheeeccc---------eecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            33444443         58999999999999999999999999988777776655554

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.86  E-value=1.8e-19  Score=167.84  Aligned_cols=274  Identities=16%  Similarity=0.187  Sum_probs=196.8

Q ss_pred             CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC--c--e-eeeeeecCCceEEEEEe-CCC-CeEEEecCCcEEEEE
Q 019384           15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA--N--V-LRGEFMHGGPVLDCCFH-DDS-SGFSASADHTVRRLV   87 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~--~--~-~~~~~~h~~~V~~~~~~-~~~-~~~s~s~D~~i~~w~   87 (342)
                      .|.|..+|..+.|-+....|+|++.|+.+++|=.++  +  + ++.-.+|..+..++.|. ..+ .+++++.|.+.+.++
T Consensus       284 ~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs  363 (910)
T KOG1539|consen  284 RNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFS  363 (910)
T ss_pred             eccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhh
Confidence            367889999999999999999999999999887653  2  2 33445899999999996 333 456899998776444


Q ss_pred             ecc-----------------------------------------------------------------Cce-eecccCC-
Q 019384           88 FSH-----------------------------------------------------------------GKE-DILGKHD-  100 (342)
Q Consensus        88 ~~~-----------------------------------------------------------------~~~-~~~~~h~-  100 (342)
                      +..                                                                 ... ...-.+. 
T Consensus       364 ~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~  443 (910)
T KOG1539|consen  364 VISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKR  443 (910)
T ss_pred             hhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcc
Confidence            311                                                                 000 0000122 


Q ss_pred             -----cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeee-ecCCCCcEEEEeccC--CeEEEEEcCCeEEEEe
Q 019384          101 -----APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVG-TYPQPERVYSLSLVG--NRLVVATAGRHVNVYD  172 (342)
Q Consensus       101 -----~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~~~~v~~~s~~~--~~~~~~s~d~~v~iwd  172 (342)
                           ..+++++.++-|+..+.|+.-|+|-+++++++-  .+..++ ...+...+..++.++  ..+++++++|.+++||
T Consensus       444 ~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi--~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~  521 (910)
T KOG1539|consen  444 FKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI--HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWD  521 (910)
T ss_pred             ccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe--eecccccCccccCceeEEEecCCCceEEEccCcceEEEEe
Confidence                 457888888889888999999999999998642  223332 223455677777764  4689999999999999


Q ss_pred             CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384          173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH  252 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  252 (342)
                      ..+.. ..  ....+...++++..+.....++++..+-.+  .++|..+....+  .+.+|..         .|++++||
T Consensus       522 f~~k~-l~--~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I--~vvD~~t~kvvR--~f~gh~n---------ritd~~FS  585 (910)
T KOG1539|consen  522 FKKKV-LK--KSLRLGSSITGIVYHRVSDLLAIALDDFSI--RVVDVVTRKVVR--EFWGHGN---------RITDMTFS  585 (910)
T ss_pred             cCCcc-ee--eeeccCCCcceeeeeehhhhhhhhcCceeE--EEEEchhhhhhH--Hhhcccc---------ceeeeEeC
Confidence            97653 11  111233345666666666666666666554  568885443333  3455543         59999999


Q ss_pred             CCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          253 PIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       253 p~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      |||++|++++.|++||+||+-++.++-.+. -..++.++.|||.|.+||+...+.
T Consensus       586 ~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~  639 (910)
T KOG1539|consen  586 PDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQ  639 (910)
T ss_pred             CCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecC
Confidence            999999999999999999999988876543 457899999999999999998753

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.86  E-value=2.8e-20  Score=162.59  Aligned_cols=212  Identities=19%  Similarity=0.259  Sum_probs=151.2

Q ss_pred             CCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCCce--------eeeeeecCCceEEEEEe--CCCCeEEEecCCcEE
Q 019384           16 NPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASANV--------LRGEFMHGGPVLDCCFH--DDSSGFSASADHTVR   84 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~~--------~~~~~~h~~~V~~~~~~--~~~~~~s~s~D~~i~   84 (342)
                      .+|.+.=+.|+|++. .-+|++++.|++|++||+....        .....+|+..|..++|+  ....+.+++.|+.+.
T Consensus       174 ~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~  253 (422)
T KOG0264|consen  174 KGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLM  253 (422)
T ss_pred             EeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEE
Confidence            466665688999995 4578999999999999986421        12234799999999997  344556999999999


Q ss_pred             EEEeccC--c-eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC---
Q 019384           85 RLVFSHG--K-EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN---  157 (342)
Q Consensus        85 ~w~~~~~--~-~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~---  157 (342)
                      +||.++.  + .....+|+..|+|++|+|-+ ..|||||.|++|++||+|+-.... ..+.  .+...++.+.++++   
T Consensus       254 iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~l-h~~e--~H~dev~~V~WSPh~et  330 (422)
T KOG0264|consen  254 IWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPL-HTFE--GHEDEVFQVEWSPHNET  330 (422)
T ss_pred             EEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCc-eecc--CCCcceEEEEeCCCCCc
Confidence            9999863  2 23457899999999999955 567999999999999999754321 1122  24456777766654   


Q ss_pred             eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecC
Q 019384          158 RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSE  237 (342)
Q Consensus       158 ~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~  237 (342)
                      .+++++.|+++.+||+..-.....                ++.      ..+            ......+...+|..  
T Consensus       331 vLASSg~D~rl~vWDls~ig~eq~----------------~ed------a~d------------gppEllF~HgGH~~--  374 (422)
T KOG0264|consen  331 VLASSGTDRRLNVWDLSRIGEEQS----------------PED------AED------------GPPELLFIHGGHTA--  374 (422)
T ss_pred             eeEecccCCcEEEEeccccccccC----------------hhh------hcc------------CCcceeEEecCccc--
Confidence            688889999999999965311100                000      000            11112233444543  


Q ss_pred             CCCceeeeeeEEEEcCCCCe-EEEecCCCeEEEEeCC
Q 019384          238 AGRDIVYPVNAIAFHPIYGT-FATGGCDGFVNVWDGN  273 (342)
Q Consensus       238 ~~~~~~~~v~~v~~sp~~~~-l~sgs~Dg~I~iWd~~  273 (342)
                             .|+.+.|+|+..+ ++|.++|+.+.||+..
T Consensus       375 -------kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  375 -------KVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             -------ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                   4889999999875 6889999999999865

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=4.2e-19  Score=167.05  Aligned_cols=249  Identities=19%  Similarity=0.296  Sum_probs=187.1

Q ss_pred             eecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccC-c-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCC
Q 019384           57 FMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHG-K-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS  133 (342)
Q Consensus        57 ~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~-~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~  133 (342)
                      +.|.++-+.++|.+++.. ++|+.|+.|++|..... + ...+.-++..|.+++..  ..+|++|+.+++|.++.+.+..
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            468899999999877765 58999999999987655 2 23444488899999864  4689999999999999986543


Q ss_pred             CcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEE
Q 019384          134 GQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA  213 (342)
Q Consensus       134 ~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~  213 (342)
                        ....+..+..+.++++++-+|+.++.|+.|-.|++.++.+..+.  +....+..++.++.++|++..+++.+.+|.+.
T Consensus        88 --~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~--~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~  163 (933)
T KOG1274|consen   88 --EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE--KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQ  163 (933)
T ss_pred             --ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh--eeecccCCceeeeeEcCCCCEEEEEecCceEE
Confidence              23345555667778888888899999999999999998876433  22335667899999999999999999999875


Q ss_pred             EEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCC--CCcceEEE
Q 019384          214 MEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSK--YPTSIAAL  291 (342)
Q Consensus       214 i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~--~~~~V~~v  291 (342)
                        +||+.+......  +.+-.+... ......+..++|+|+|..|+.-..|+.|++|+..+......+..  +...+.++
T Consensus       164 --iw~~~~~~~~~t--l~~v~k~n~-~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~  238 (933)
T KOG1274|consen  164 --IWDLQDGILSKT--LTGVDKDNE-FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDL  238 (933)
T ss_pred             --EEEcccchhhhh--cccCCcccc-ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEE
Confidence              588864432221  111111111 11123567789999999999999999999999998877666542  33458999


Q ss_pred             EECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          292 SFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       292 ~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      +|||.|+|||+++.++           .|.||+++-
T Consensus       239 ~wsPnG~YiAAs~~~g-----------~I~vWnv~t  263 (933)
T KOG1274|consen  239 QWSPNGKYIAASTLDG-----------QILVWNVDT  263 (933)
T ss_pred             EEcCCCcEEeeeccCC-----------cEEEEeccc
Confidence            9999999999988765           577777763

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1.6e-20  Score=170.53  Aligned_cols=241  Identities=17%  Similarity=0.228  Sum_probs=178.4

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce---eeeeeecCCceEEEEE-eCCCC-eEEEecCCcEEEEEecc
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV---LRGEFMHGGPVLDCCF-HDDSS-GFSASADHTVRRLVFSH   90 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~---~~~~~~h~~~V~~~~~-~~~~~-~~s~s~D~~i~~w~~~~   90 (342)
                      +-|+++|+.+..-.+++.|+|+|.|-||++|+...+.   ......|.+-|.|+++ ..+.. +++||-|+.|.+||+.+
T Consensus        70 e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~  149 (735)
T KOG0308|consen   70 EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINT  149 (735)
T ss_pred             hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccC
Confidence            5788999999999999999999999999999986542   3344569999999999 45544 46999999999999997


Q ss_pred             Ccee------------ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCe
Q 019384           91 GKED------------ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR  158 (342)
Q Consensus        91 ~~~~------------~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~  158 (342)
                      +...            ...++...|+++|.++.+..|++|+.++-|++||.++...  .+.+..|....+++-++-+|.+
T Consensus       150 ~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k--imkLrGHTdNVr~ll~~dDGt~  227 (735)
T KOG0308|consen  150 GTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK--IMKLRGHTDNVRVLLVNDDGTR  227 (735)
T ss_pred             cchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccc--eeeeeccccceEEEEEcCCCCe
Confidence            7321            2238899999999999999999999999999999987543  3445555444556666667889


Q ss_pred             EEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384          159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA  238 (342)
Q Consensus       159 ~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~  238 (342)
                      +++++.|++|++||+......... . .++..+..+...|+-..+.+|+.++.+  +.-|++...   ...+-+.++   
T Consensus       228 ~ls~sSDgtIrlWdLgqQrCl~T~-~-vH~e~VWaL~~~~sf~~vYsG~rd~~i--~~Tdl~n~~---~~tlick~d---  297 (735)
T KOG0308|consen  228 LLSASSDGTIRLWDLGQQRCLATY-I-VHKEGVWALQSSPSFTHVYSGGRDGNI--YRTDLRNPA---KSTLICKED---  297 (735)
T ss_pred             EeecCCCceEEeeeccccceeeeE-E-eccCceEEEeeCCCcceEEecCCCCcE--EecccCCch---hheEeecCC---
Confidence            999999999999999875443322 1 222236667777887888888888865  346665421   111112111   


Q ss_pred             CCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          239 GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       239 ~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                           .||..+..+...+-+.++..|+.|+-|..+
T Consensus       298 -----aPv~~l~~~~~~~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  298 -----APVLKLHLHEHDNSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             -----CchhhhhhccccCCceeeeccccceecCCc
Confidence                 256666666555556888899999999755

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=3.9e-20  Score=170.97  Aligned_cols=271  Identities=17%  Similarity=0.286  Sum_probs=188.5

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc----eeeeeeec----CCceEEEEEe--CCCCeEEEecCCcEEEEEec
Q 019384           20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASAN----VLRGEFMH----GGPVLDCCFH--DDSSGFSASADHTVRRLVFS   89 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~----~~~~~~~h----~~~V~~~~~~--~~~~~~s~s~D~~i~~w~~~   89 (342)
                      ....+|+-.++-..++.++.. .++||-+...    ++..-+.-    .-.+..|.|.  .+..+++|+..|.|-+||+.
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            455677777887777766544 7888887432    11111111    1123456675  44556899999999999997


Q ss_pred             cC--c--eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc-CCeEEEEE
Q 019384           90 HG--K--EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV-GNRLVVAT  163 (342)
Q Consensus        90 ~~--~--~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~-~~~~~~~s  163 (342)
                      ..  +  ...+..|+..|++++|++.. .+|+|||.||+||+||++.....  .....-....+-+.|++. ++.|+++.
T Consensus       119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~--~t~~~nSESiRDV~fsp~~~~~F~s~~  196 (839)
T KOG0269|consen  119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK--STFRSNSESIRDVKFSPGYGNKFASIH  196 (839)
T ss_pred             ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc--ccccccchhhhceeeccCCCceEEEec
Confidence            73  2  23578899999999999854 67899999999999999864331  112221122334456664 56899999


Q ss_pred             cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384          164 AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV  243 (342)
Q Consensus       164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~  243 (342)
                      ..|.+++||+|.......+. .++.+.+.|+.|+|++..+++|+-|+.++|  ||..+........+  +        -.
T Consensus       197 dsG~lqlWDlRqp~r~~~k~-~AH~GpV~c~nwhPnr~~lATGGRDK~vki--Wd~t~~~~~~~~tI--n--------Ti  263 (839)
T KOG0269|consen  197 DSGYLQLWDLRQPDRCEKKL-TAHNGPVLCLNWHPNREWLATGGRDKMVKI--WDMTDSRAKPKHTI--N--------TI  263 (839)
T ss_pred             CCceEEEeeccCchhHHHHh-hcccCceEEEeecCCCceeeecCCCccEEE--EeccCCCccceeEE--e--------ec
Confidence            99999999999876554433 356678899999999999999999998766  55532211111111  1        12


Q ss_pred             eeeeEEEEcCCCC-eEEEec--CCCeEEEEeCCCce-eeeccCCCCcceEEEEE-CCCCCEEEEEEec
Q 019384          244 YPVNAIAFHPIYG-TFATGG--CDGFVNVWDGNNKK-RLYQYSKYPTSIAALSF-SRDGRLLAVASSY  306 (342)
Q Consensus       244 ~~v~~v~~sp~~~-~l~sgs--~Dg~I~iWd~~~~~-~~~~~~~~~~~V~~v~~-spdg~~las~s~~  306 (342)
                      .||..|+|-|... .||+++  .|-.|+|||++..- +-.++..|...+..++| +-|...|.+++.+
T Consensus       264 apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD  331 (839)
T KOG0269|consen  264 APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKD  331 (839)
T ss_pred             ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCc
Confidence            4799999999866 478776  58899999987543 34678889999999999 4466677777764

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=4.1e-19  Score=160.07  Aligned_cols=274  Identities=20%  Similarity=0.227  Sum_probs=194.1

Q ss_pred             CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC--eEEEecCCcEEEEEeccCc
Q 019384           15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS--GFSASADHTVRRLVFSHGK   92 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~--~~s~s~D~~i~~w~~~~~~   92 (342)
                      -.+|.+.|.+|+-.|.|..||+|+.||+||||.+.+++++......+.|.+++|.|...  ++.++....+.+.+..-+.
T Consensus       396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~  475 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD  475 (733)
T ss_pred             EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence            36899999999999999999999999999999999999888888889999999986543  3455544444333321110


Q ss_pred             --------------------------------------eeecccCCcceeEEEEeCCCCEEEEeeCC---CcEEEEcCCC
Q 019384           93 --------------------------------------EDILGKHDAPVRCIEYSYAAGQVITGSWD---KSLKCWDPRG  131 (342)
Q Consensus        93 --------------------------------------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D---~~I~iWd~~~  131 (342)
                                                            ..+...|...|+++.|+.+|++|++...|   ..|-|.++..
T Consensus       476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK  555 (733)
T KOG0650|consen  476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK  555 (733)
T ss_pred             hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence                                                  01223578889999999999999987665   4688888754


Q ss_pred             CCCcceeeeeecCCCCcEEEEeccC--CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC
Q 019384          132 ASGQERTLVGTYPQPERVYSLSLVG--NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE  209 (342)
Q Consensus       132 ~~~~~~~~~~~~~~~~~v~~~s~~~--~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~  209 (342)
                      ...+  ..+..  ....+....+.+  .+++++++ ..|++||+.....  .+........+..++.+|.|..+++++.+
T Consensus       556 ~~sQ--~PF~k--skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqel--vKkL~tg~kwiS~msihp~GDnli~gs~d  628 (733)
T KOG0650|consen  556 RKSQ--SPFRK--SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQEL--VKKLLTGSKWISSMSIHPNGDNLILGSYD  628 (733)
T ss_pred             cccc--Cchhh--cCCceeEEEecCCCceEEEEec-cceEEEehhHHHH--HHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence            3221  22211  222334444443  46666665 5799999975321  11111223457788999999999999999


Q ss_pred             CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC-------Cc--eeeec
Q 019384          210 GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN-------NK--KRLYQ  280 (342)
Q Consensus       210 ~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~-------~~--~~~~~  280 (342)
                      +.+.  +||+.-...+.+ .+..|.+         ++++|+||+.-..+++|+.||++.|+-..       +.  ..+..
T Consensus       629 ~k~~--WfDldlsskPyk-~lr~H~~---------avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~  696 (733)
T KOG0650|consen  629 KKMC--WFDLDLSSKPYK-TLRLHEK---------AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR  696 (733)
T ss_pred             CeeE--EEEcccCcchhH-Hhhhhhh---------hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence            9764  577644332222 2445554         58999999999999999999999999532       22  23567


Q ss_pred             cCCCCcc----eEEEEECCCCCEEEEEEecc
Q 019384          281 YSKYPTS----IAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       281 ~~~~~~~----V~~v~~spdg~~las~s~~~  307 (342)
                      +.+|...    |.++.|.|.--+|.+++.+.
T Consensus       697 L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~  727 (733)
T KOG0650|consen  697 LRGHEKTNDLGVLDTIWHPRQPWLFSAGADG  727 (733)
T ss_pred             ccCceeecccceEeecccCCCceEEecCCCc
Confidence            8888766    89999999999999988764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=1.9e-19  Score=163.29  Aligned_cols=246  Identities=18%  Similarity=0.246  Sum_probs=162.9

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee---eeecCCceEEEEEeCCCC--eEEEecCCcEEEEEeccC
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG---EFMHGGPVLDCCFHDDSS--GFSASADHTVRRLVFSHG   91 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~---~~~h~~~V~~~~~~~~~~--~~s~s~D~~i~~w~~~~~   91 (342)
                      -|-+.|..+.|-|-..+|++++.|.|+|+||+.+.++.+   .++|.+.|.++||.+...  +++|+.|+.+.+||+.-.
T Consensus        98 aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n  177 (720)
T KOG0321|consen   98 AHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN  177 (720)
T ss_pred             cccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence            467899999999966789999999999999999877654   468999999999985443  469999999999998543


Q ss_pred             cee--------e--------------------cccCCcceeE---EEEeCCCCEEEEeeC-CCcEEEEcCCCCCCcc-ee
Q 019384           92 KED--------I--------------------LGKHDAPVRC---IEYSYAAGQVITGSW-DKSLKCWDPRGASGQE-RT  138 (342)
Q Consensus        92 ~~~--------~--------------------~~~h~~~V~~---~~~~~~~~~l~sgs~-D~~I~iWd~~~~~~~~-~~  138 (342)
                      ...        .                    ...|...|.+   +-+..|...|||++. |+.||+||++...... +.
T Consensus       178 ~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~e  257 (720)
T KOG0321|consen  178 GVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQE  257 (720)
T ss_pred             chhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccC
Confidence            210        0                    0123333444   445568888999887 9999999998643211 11


Q ss_pred             eeee--cC-C---CCcEEEEecc--CCeEEEEEcCCeEEEEeCCCCCCccc-ccccccc-eeeEEEEEeeCCceEEEEcc
Q 019384          139 LVGT--YP-Q---PERVYSLSLV--GNRLVVATAGRHVNVYDLRNMSQPEQ-RRESSLK-YQTRCVRCYPNGTGYALSSV  208 (342)
Q Consensus       139 ~~~~--~~-~---~~~v~~~s~~--~~~~~~~s~d~~v~iwd~~~~~~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~s~  208 (342)
                      ..+.  +. +   ...+++|..+  |.++++...|+.|.+||++....... ....... .....-..+|++.++++++.
T Consensus       258 p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs  337 (720)
T KOG0321|consen  258 PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS  337 (720)
T ss_pred             CCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCC
Confidence            1111  11 1   1234455554  56665555599999999987654211 1111111 11122236799999999999


Q ss_pred             CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC-CeEEEecCCCeEEEEeCCC
Q 019384          209 EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY-GTFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       209 ~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~-~~l~sgs~Dg~I~iWd~~~  274 (342)
                      +....+  |.+..... -...+.+|..         .|.+|+|.|.. .-+++|+.|-+++||++.+
T Consensus       338 d~~ayi--w~vs~~e~-~~~~l~Ght~---------eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  338 DEQAYI--WVVSSPEA-PPALLLGHTR---------EVTTVRWLPSATTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             Ccceee--eeecCccC-ChhhhhCcce---------EEEEEeeccccCCCceeeccCcceEEEeccC
Confidence            998766  44432221 1122344433         58899988753 2477889999999999864

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.85  E-value=1.2e-19  Score=155.32  Aligned_cols=234  Identities=20%  Similarity=0.265  Sum_probs=161.5

Q ss_pred             CCCCCeEEEEEcCCC--CeEEEEeCCCcEEEEECCCc-----------------eeeeeeecCCceEEEEEeC--CCCeE
Q 019384           17 PPSDGISNLRFSNHS--DHLLVSSWDKSVRLYDASAN-----------------VLRGEFMHGGPVLDCCFHD--DSSGF   75 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~--~~l~s~s~Dgti~vwd~~~~-----------------~~~~~~~h~~~V~~~~~~~--~~~~~   75 (342)
                      +|-+.|+-++-++-+  .+.|+=+..|.|+|||+...                 .+....+|++.-++++|+|  .+.++
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            455667777666644  45566677899999997421                 1334447999999999997  34466


Q ss_pred             EEecCCcEEEEEeccCce----eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEE
Q 019384           76 SASADHTVRRLVFSHGKE----DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVY  150 (342)
Q Consensus        76 s~s~D~~i~~w~~~~~~~----~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~  150 (342)
                      +|-.-+.|++|-..++..    ..+.+|+..|-.++|+|.. ..|+|||.|++|+|||+|++.+........  +...|.
T Consensus       229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA--h~sDVN  306 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA--HNSDVN  306 (440)
T ss_pred             cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec--cCCcee
Confidence            776677899998888763    3567799999999999954 678999999999999999764433333333  334566


Q ss_pred             EEeccCC--eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccc
Q 019384          151 SLSLVGN--RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKY  228 (342)
Q Consensus       151 ~~s~~~~--~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~  228 (342)
                      .++++++  .|++|+.||+++|||+|..+..     .    .            ++                        
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~-----~----p------------VA------------------------  341 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSG-----Q----P------------VA------------------------  341 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCC-----C----c------------ce------------------------
Confidence            6777654  6889999999999999875211     0    0            00                        


Q ss_pred             eeeeEEecCCCCceeeeeeEEEEcCCC-CeEEEecCCCeEEEEeCCCc-------------------eeeeccCCCCcce
Q 019384          229 AFKCHRKSEAGRDIVYPVNAIAFHPIY-GTFATGGCDGFVNVWDGNNK-------------------KRLYQYSKYPTSI  288 (342)
Q Consensus       229 ~~~~h~~~~~~~~~~~~v~~v~~sp~~-~~l~sgs~Dg~I~iWd~~~~-------------------~~~~~~~~~~~~V  288 (342)
                      .++.|.         .||++|.|+|.. ..|++++.|.+|.|||+...                   +++...++ +..|
T Consensus       342 ~fk~Hk---------~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~  411 (440)
T KOG0302|consen  342 TFKYHK---------APITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG-QKEV  411 (440)
T ss_pred             eEEecc---------CCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-hhHh
Confidence            012232         279999999974 46888999999999997421                   11111111 3468


Q ss_pred             EEEEECCCCC-EEEEEEecc
Q 019384          289 AALSFSRDGR-LLAVASSYT  307 (342)
Q Consensus       289 ~~v~~spdg~-~las~s~~~  307 (342)
                      ..|.|.+.-. +|++.+-++
T Consensus       412 KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  412 KEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             hhheeccCCCCeEEEecccc
Confidence            8999988755 555555444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=7.1e-19  Score=147.98  Aligned_cols=293  Identities=17%  Similarity=0.252  Sum_probs=198.0

Q ss_pred             cccCCCCCCCccCCC----CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC-----c---e----eee--eeecCCce
Q 019384            2 TAVHPPPTSGRELGN----PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA-----N---V----LRG--EFMHGGPV   63 (342)
Q Consensus         2 ~~~~~~~~~~~~~~~----~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~-----~---~----~~~--~~~h~~~V   63 (342)
                      .|+-+|-..+-+...    ++.+..-...|||||.-|++-+.|..+++|++..     .   .    ...  .+.....|
T Consensus        28 ~y~qg~~~l~g~~~~~stt~p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tv  107 (406)
T KOG2919|consen   28 GYVQGPINLGGNVIAFSTTKPLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETV  107 (406)
T ss_pred             ceeecceeccCceEEeccCCchhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEE
Confidence            344445444433331    2445566789999999999999999999999732     1   0    011  11234567


Q ss_pred             EEEEEe-------CCCCe-EEEecCCcEEEEEeccCceee---cccCCcce---eEEEEeCCCCEEEEeeCCCcEEEEcC
Q 019384           64 LDCCFH-------DDSSG-FSASADHTVRRLVFSHGKEDI---LGKHDAPV---RCIEYSYAAGQVITGSWDKSLKCWDP  129 (342)
Q Consensus        64 ~~~~~~-------~~~~~-~s~s~D~~i~~w~~~~~~~~~---~~~h~~~V---~~~~~~~~~~~l~sgs~D~~I~iWd~  129 (342)
                      ...+|-       |+..+ ++.+.|..|++||.-+++.+.   ...|.+.+   .|++|+|||.+|++| ..+.||++|+
T Consensus       108 ydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt  186 (406)
T KOG2919|consen  108 YDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDT  186 (406)
T ss_pred             EEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeec
Confidence            888874       23333 466788999999998887542   23455444   489999999999865 5789999998


Q ss_pred             -CCCCCcc-eeeee--ecCCCCcEEEEeccC---CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce
Q 019384          130 -RGASGQE-RTLVG--TYPQPERVYSLSLVG---NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG  202 (342)
Q Consensus       130 -~~~~~~~-~~~~~--~~~~~~~v~~~s~~~---~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  202 (342)
                       |.+.... ...+.  .......+.++++++   ..++.+++..++-|+.-.......  .......-++-+.+.++|+.
T Consensus       187 ~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~--llggh~gGvThL~~~edGn~  264 (406)
T KOG2919|consen  187 SRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ--LLGGHGGGVTHLQWCEDGNK  264 (406)
T ss_pred             cCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee--eecccCCCeeeEEeccCcCe
Confidence             4332211 11111  111223344455543   478899999998888776543222  22234456788999999999


Q ss_pred             EEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEE--cCCCCeEEEecCCCeEEEEeCCC-ceeee
Q 019384          203 YALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF--HPIYGTFATGGCDGFVNVWDGNN-KKRLY  279 (342)
Q Consensus       203 ~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~--sp~~~~l~sgs~Dg~I~iWd~~~-~~~~~  279 (342)
                      +.+++-... .|..||++.. ....+.+..|....+.        .|-|  .|++++|++|+.||.|++||.++ +..+.
T Consensus       265 lfsGaRk~d-kIl~WDiR~~-~~pv~~L~rhv~~TNQ--------RI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s  334 (406)
T KOG2919|consen  265 LFSGARKDD-KILCWDIRYS-RDPVYALERHVGDTNQ--------RILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS  334 (406)
T ss_pred             ecccccCCC-eEEEEeehhc-cchhhhhhhhccCccc--------eEEEecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence            998874333 4567999754 3345667777653221        2334  58899999999999999999987 45566


Q ss_pred             ccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          280 QYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       280 ~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      .+..|...|+.++++|--.++|++|...
T Consensus       335 v~~~~sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  335 VTGNYSDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             ccccccccccceecCcccceeeeccCce
Confidence            7778888999999999999999998743

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.84  E-value=7.9e-19  Score=146.42  Aligned_cols=231  Identities=11%  Similarity=0.159  Sum_probs=165.3

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCC---CeEEEecCCcEEEEEeccCc
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDS---SGFSASADHTVRRLVFSHGK   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~---~~~s~s~D~~i~~w~~~~~~   92 (342)
                      ..|...|.+++|+.||..+++|+.|+.+++||+.++.....-.|.++|.+|.|.+..   -+++||.|.+++.||.+...
T Consensus        69 ~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~  148 (347)
T KOG0647|consen   69 QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN  148 (347)
T ss_pred             hccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence            578899999999999999999999999999999998887788899999999997433   35799999999999998776


Q ss_pred             eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384           93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD  172 (342)
Q Consensus        93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd  172 (342)
                      ......--+.+++++.-  ...++.+..|+.|.+++++++..+.....-..+...+.+++-.+.+..+.|+-.|.+-+..
T Consensus       149 pv~t~~LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~  226 (347)
T KOG0647|consen  149 PVATLQLPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQY  226 (347)
T ss_pred             eeeeeeccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEe
Confidence            44333333566766543  3567788899999999997654322111111122334445555667779999999998888


Q ss_pred             CCCCCC--cc----cccc---cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384          173 LRNMSQ--PE----QRRE---SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV  243 (342)
Q Consensus       173 ~~~~~~--~~----~~~~---~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~  243 (342)
                      +.....  ..    .+..   ...-+.+++++|+|....+++.+.||+.  .+||-......  ...+.|.         
T Consensus       227 id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf--~FWDkdar~kL--k~s~~~~---------  293 (347)
T KOG0647|consen  227 IDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTF--SFWDKDARTKL--KTSETHP---------  293 (347)
T ss_pred             cCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceE--EEecchhhhhh--hccCcCC---------
Confidence            766421  11    1110   1112457889999999999999999976  47997433222  2222222         


Q ss_pred             eeeeEEEEcCCCCeEEEe
Q 019384          244 YPVNAIAFHPIYGTFATG  261 (342)
Q Consensus       244 ~~v~~v~~sp~~~~l~sg  261 (342)
                      .+|.+++|+.+|.++|-+
T Consensus       294 qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  294 QPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             CccceeEecCCCCEEEEE
Confidence            389999999999988665

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.84  E-value=5.2e-19  Score=161.84  Aligned_cols=289  Identities=18%  Similarity=0.212  Sum_probs=194.9

Q ss_pred             CCCCCCeEEEEEcCCCC---eEEEEeCCCcEEEEECCCc-------------------------eee------e-eeecC
Q 019384           16 NPPSDGISNLRFSNHSD---HLLVSSWDKSVRLYDASAN-------------------------VLR------G-EFMHG   60 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~---~l~s~s~Dgti~vwd~~~~-------------------------~~~------~-~~~h~   60 (342)
                      ++|.++|.+|+|...+.   +|||+|.|..||||.+.-.                         ++.      . ..+|.
T Consensus       188 ~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe  267 (764)
T KOG1063|consen  188 EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE  267 (764)
T ss_pred             eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc
Confidence            68999999999997554   7899999999999997311                         001      1 12699


Q ss_pred             CceEEEEEeCCC-CeEEEecCCcEEEEEeccCc---e---e--ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCC
Q 019384           61 GPVLDCCFHDDS-SGFSASADHTVRRLVFSHGK---E---D--ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG  131 (342)
Q Consensus        61 ~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~~---~---~--~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~  131 (342)
                      +-|.++.|+|.+ .++++|+|.++.+|-.....   .   +  -..+.....+.+-|+|++..|++-+.-|..++|....
T Consensus       268 DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d  347 (764)
T KOG1063|consen  268 DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD  347 (764)
T ss_pred             cceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC
Confidence            999999999777 67899999999999765542   1   1  1223345688899999999999999999999998332


Q ss_pred             CCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEEEeCCCCCCc--ccccccccceeeEEEEEeeCCceEEEEc
Q 019384          132 ASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQP--EQRRESSLKYQTRCVRCYPNGTGYALSS  207 (342)
Q Consensus       132 ~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~s  207 (342)
                      ...-.+..+ ...+...|..+.+  .|+++++++.|.+.|+|--...++.  ...+.+-+.+..+|+++-+....++++.
T Consensus       348 ~~~w~~~~~-iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgA  426 (764)
T KOG1063|consen  348 KTFWTQEPV-ISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGA  426 (764)
T ss_pred             ccceeeccc-cccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecc
Confidence            111011111 1123344555555  5889999999999999865421111  1111233456678888887644455554


Q ss_pred             cCCeEEEEEeechhhhh-----------------ccc----------ceee-------eE--------------------
Q 019384          208 VEGRVAMEFFDLSEASQ-----------------AKK----------YAFK-------CH--------------------  233 (342)
Q Consensus       208 ~~~~~~i~~~d~~~~~~-----------------~~~----------~~~~-------~h--------------------  233 (342)
                      .+ ++ ++.|+.....-                 +..          ..+.       .+                    
T Consensus       427 dE-KV-lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP  504 (764)
T KOG1063|consen  427 DE-KV-LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPP  504 (764)
T ss_pred             cc-ee-eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCC
Confidence            43 33 23444211100                 000          0000       00                    


Q ss_pred             -----------EecCCCCceeeeeeEEEEcCCCCeEEEecC-----CCeEEEEeCCCceeeeccCCCCcceEEEEECCCC
Q 019384          234 -----------RKSEAGRDIVYPVNAIAFHPIYGTFATGGC-----DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDG  297 (342)
Q Consensus       234 -----------~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~-----Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg  297 (342)
                                 ++...-.+|.+.|.+++.+|+++++||+..     ---|+||+..+-..++.+.+|.-.|+.|+|||||
T Consensus       505 ~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg  584 (764)
T KOG1063|consen  505 TEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDG  584 (764)
T ss_pred             hHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCC
Confidence                       000112556688999999999999999853     3369999999888888899999999999999999


Q ss_pred             CEEEEEEecc
Q 019384          298 RLLAVASSYT  307 (342)
Q Consensus       298 ~~las~s~~~  307 (342)
                      +||++.|.+.
T Consensus       585 ~~LLsvsRDR  594 (764)
T KOG1063|consen  585 RYLLSVSRDR  594 (764)
T ss_pred             cEEEEeecCc
Confidence            9999999864

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=3.6e-20  Score=177.95  Aligned_cols=283  Identities=16%  Similarity=0.189  Sum_probs=199.8

Q ss_pred             EEEEEcCCCC-eEEE----------EeCCCcEEEEECCC--c----eeeeeeecCCceEEEEEeCC-----CCeEEEecC
Q 019384           23 SNLRFSNHSD-HLLV----------SSWDKSVRLYDASA--N----VLRGEFMHGGPVLDCCFHDD-----SSGFSASAD   80 (342)
Q Consensus        23 ~~l~fs~~~~-~l~s----------~s~Dgti~vwd~~~--~----~~~~~~~h~~~V~~~~~~~~-----~~~~s~s~D   80 (342)
                      ..++|||.+. +||+          -|.+.++.||.+..  .    +.+....-....+.+.|.+-     +.++.|..|
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence            3578999886 3332          24566777887642  1    23444445566788999632     235577789


Q ss_pred             CcEEEEEeccC---c-e---eecccCCcceeEEEEeCCCC-EEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE
Q 019384           81 HTVRRLVFSHG---K-E---DILGKHDAPVRCIEYSYAAG-QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL  152 (342)
Q Consensus        81 ~~i~~w~~~~~---~-~---~~~~~h~~~V~~~~~~~~~~-~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~  152 (342)
                      |.|.+|+...-   . .   .....|++.|..++|++... .||+|+.||.|.|||+.....  ............|.++
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t--P~~~~~~~~~~eI~~l  167 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET--PFTPGSQAPPSEIKCL  167 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC--CCCCCCCCCcccceEe
Confidence            99999997652   2 1   23568999999999999765 899999999999999975322  1112222234567788


Q ss_pred             eccCC---eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce-EEEEc-cCCeEEEEEeechhhhhccc
Q 019384          153 SLVGN---RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG-YALSS-VEGRVAMEFFDLSEASQAKK  227 (342)
Q Consensus       153 s~~~~---~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~s-~~~~~~i~~~d~~~~~~~~~  227 (342)
                      +++..   .+++++.++++.|||+|..+.........-+.+...++|+|++.. +++++ .|+.-.|.+||++......+
T Consensus       168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k  247 (1049)
T KOG0307|consen  168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK  247 (1049)
T ss_pred             ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh
Confidence            88753   688999999999999998643333222233345667899998754 44454 44445678999876543322


Q ss_pred             ceeeeEEecCCCCceeeeeeEEEEcCCC-CeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCC-EEEEEEe
Q 019384          228 YAFKCHRKSEAGRDIVYPVNAIAFHPIY-GTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGR-LLAVASS  305 (342)
Q Consensus       228 ~~~~~h~~~~~~~~~~~~v~~v~~sp~~-~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~-~las~s~  305 (342)
                       .+++|+.         .|.++.|++.+ .+|+|++.|+.|.+|+.++++.+.++....+++..+.|+|..- .+++++.
T Consensus       248 -~~~~H~~---------GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asf  317 (1049)
T KOG0307|consen  248 -ILEGHQR---------GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASF  317 (1049)
T ss_pred             -hhccccc---------ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhhee
Confidence             2467765         48899999876 7899999999999999999999999988888999999999877 6665555


Q ss_pred             ccccCCCCCCCCCcEEEEEccCC
Q 019384          306 YTFEEGDKPHEPDAIFVRSVNEI  328 (342)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~  328 (342)
                      ++           .|-+|++...
T Consensus       318 dg-----------kI~I~sl~~~  329 (1049)
T KOG0307|consen  318 DG-----------KISIYSLQGT  329 (1049)
T ss_pred             cc-----------ceeeeeeecC
Confidence            55           3666666543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=6.5e-19  Score=147.95  Aligned_cols=265  Identities=16%  Similarity=0.172  Sum_probs=166.8

Q ss_pred             eeecCCceEEEEEeC-CCCeEEEecCCcEEEEEeccCc---eeeccc--CCcceeEEEEeCCCCE-EEEeeCCCcEEEEc
Q 019384           56 EFMHGGPVLDCCFHD-DSSGFSASADHTVRRLVFSHGK---EDILGK--HDAPVRCIEYSYAAGQ-VITGSWDKSLKCWD  128 (342)
Q Consensus        56 ~~~h~~~V~~~~~~~-~~~~~s~s~D~~i~~w~~~~~~---~~~~~~--h~~~V~~~~~~~~~~~-l~sgs~D~~I~iWd  128 (342)
                      +.+|++.|++++|+. +..+++++.|++|++|+++.-.   .+.++.  --+--+.+.|.||-+. ++++-...++++|.
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk  161 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYK  161 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEE
Confidence            447999999999985 4567899999999999976422   111110  0123467899998765 46666777899996


Q ss_pred             CCC--CCCcceeee--eec----CCCCcEEEE--eccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEee
Q 019384          129 PRG--ASGQERTLV--GTY----PQPERVYSL--SLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYP  198 (342)
Q Consensus       129 ~~~--~~~~~~~~~--~~~----~~~~~v~~~--s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  198 (342)
                      +..  ..+......  ..+    .+...+..+  .-.+..|++++.|.+|.||+++ ++.........  ....-.+++|
T Consensus       162 ~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq--~~n~~aavSP  238 (420)
T KOG2096|consen  162 LVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ--SSNYDAAVSP  238 (420)
T ss_pred             eeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc--ccccceeeCC
Confidence            532  111111111  111    122223333  2234589999999999999998 32221111100  1123356899


Q ss_pred             CCceEEEEccCCeEEEEEeech---h---hhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeC
Q 019384          199 NGTGYALSSVEGRVAMEFFDLS---E---ASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDG  272 (342)
Q Consensus       199 ~~~~~~~~s~~~~~~i~~~d~~---~---~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~  272 (342)
                      +|+.++++.---++.+  |..-   +   ..-.+.+.+.+|+.         .|.+++|+|+...++|.|.||++||||+
T Consensus       239 ~GRFia~~gFTpDVkV--wE~~f~kdG~fqev~rvf~LkGH~s---------aV~~~aFsn~S~r~vtvSkDG~wriwdt  307 (420)
T KOG2096|consen  239 DGRFIAVSGFTPDVKV--WEPIFTKDGTFQEVKRVFSLKGHQS---------AVLAAAFSNSSTRAVTVSKDGKWRIWDT  307 (420)
T ss_pred             CCcEEEEecCCCCceE--EEEEeccCcchhhhhhhheeccchh---------heeeeeeCCCcceeEEEecCCcEEEeec
Confidence            9999998887776654  5531   1   11234577888875         5999999999999999999999999997


Q ss_pred             C-------CceeeeccC----CCCcceEEEEECCCCCEEEEEEecc-----ccCCCCCCCCCcEEEEEccCCccccCC
Q 019384          273 N-------NKKRLYQYS----KYPTSIAALSFSRDGRLLAVASSYT-----FEEGDKPHEPDAIFVRSVNEIEVKPKP  334 (342)
Q Consensus       273 ~-------~~~~~~~~~----~~~~~V~~v~~spdg~~las~s~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (342)
                      +       +.+.+.+..    ...+.-..++.||.|+.||.++..+     .|+|+++.+-+.+-=-.+..+++-|.|
T Consensus       308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g  385 (420)
T KOG2096|consen  308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDG  385 (420)
T ss_pred             cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCC
Confidence            5       233333321    1223334899999999999988744     366776666554433333344444433

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.84  E-value=1.1e-19  Score=160.64  Aligned_cols=236  Identities=16%  Similarity=0.206  Sum_probs=172.9

Q ss_pred             eeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceee------cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEc
Q 019384           55 GEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDI------LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD  128 (342)
Q Consensus        55 ~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~------~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd  128 (342)
                      .++.|...|.++..+...+.+-.+..+-|++||+.....+.      ...-...|++|.+.||+..|++|+.-.++.|||
T Consensus       414 ~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  414 NTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             hhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence            34568888888888855555544556789999997754221      123457899999999999999999999999999


Q ss_pred             CCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc
Q 019384          129 PRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV  208 (342)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~  208 (342)
                      +...+......+....-.-...+++++.+..+++..||.|.+||+++.....+  ......-..|+.++++|..+.+|+.
T Consensus       494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrq--fqGhtDGascIdis~dGtklWTGGl  571 (705)
T KOG0639|consen  494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQ--FQGHTDGASCIDISKDGTKLWTGGL  571 (705)
T ss_pred             ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeec--ccCCCCCceeEEecCCCceeecCCC
Confidence            97654321111111101111234455556777889999999999998643322  2233445678999999999999999


Q ss_pred             CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcce
Q 019384          209 EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSI  288 (342)
Q Consensus       209 ~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V  288 (342)
                      |++++  .||+++..+...+.+..            .|.++.++|++.+|+.|.+++.+.|-..... ...++..|.+-|
T Consensus       572 DntvR--cWDlregrqlqqhdF~S------------QIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScV  636 (705)
T KOG0639|consen  572 DNTVR--CWDLREGRQLQQHDFSS------------QIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCV  636 (705)
T ss_pred             cccee--ehhhhhhhhhhhhhhhh------------hheecccCCCccceeeecccCcEEEEecCCc-cceeecccccEE
Confidence            99875  59999876665554432            4888999999999999999999998876643 344566788999


Q ss_pred             EEEEECCCCCEEEEEEecc
Q 019384          289 AALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       289 ~~v~~spdg~~las~s~~~  307 (342)
                      .++.|++-|+++++.+.++
T Consensus       637 LSlKFa~cGkwfvStGkDn  655 (705)
T KOG0639|consen  637 LSLKFAYCGKWFVSTGKDN  655 (705)
T ss_pred             EEEEecccCceeeecCchh
Confidence            9999999999999998754

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.83  E-value=1.7e-18  Score=151.59  Aligned_cols=282  Identities=18%  Similarity=0.217  Sum_probs=195.1

Q ss_pred             CCCCCCeEEEEEcCCC--CeEEEEeCCCcEEEEECCCc-----eeeeeeecCCceEEEEEeC--CCCeEEEecCCcEEEE
Q 019384           16 NPPSDGISNLRFSNHS--DHLLVSSWDKSVRLYDASAN-----VLRGEFMHGGPVLDCCFHD--DSSGFSASADHTVRRL   86 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~--~~l~s~s~Dgti~vwd~~~~-----~~~~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i~~w   86 (342)
                      ..+...|++++|.|--  +.+|+|..-|.|-+||+.++     ...-...|+++|.++.|+|  ..++++.|+||+|++-
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~  262 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ  262 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence            4567899999999954  57888889999999999532     2344456999999999985  4568899999999999


Q ss_pred             EeccCcee-eccc--CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---CCeEE
Q 019384           87 VFSHGKED-ILGK--HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---GNRLV  160 (342)
Q Consensus        87 ~~~~~~~~-~~~~--h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~~~~~  160 (342)
                      |++..... ++..  ....+.++.|+.+...++.+..=|...+||+++..... ..+..  +..+|..+.++   +..++
T Consensus       263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~-~~~~l--h~kKI~sv~~NP~~p~~la  339 (498)
T KOG4328|consen  263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY-ENLRL--HKKKITSVALNPVCPWFLA  339 (498)
T ss_pred             eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc-hhhhh--hhcccceeecCCCCchhee
Confidence            99887632 2322  33456778888877778887777799999998754321 11222  23456666665   45899


Q ss_pred             EEEcCCeEEEEeCCCCCCccc--ccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh--cccceeeeEEec
Q 019384          161 VATAGRHVNVYDLRNMSQPEQ--RRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ--AKKYAFKCHRKS  236 (342)
Q Consensus       161 ~~s~d~~v~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~--~~~~~~~~h~~~  236 (342)
                      +++.|++.+|||+|.......  .....+...+.+..|+|++..+++.+.|..++  +||..-...  .....+ .|...
T Consensus       340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR--v~dss~~sa~~~p~~~I-~Hn~~  416 (498)
T KOG4328|consen  340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR--VFDSSCISAKDEPLGTI-PHNNR  416 (498)
T ss_pred             ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceE--EeecccccccCCcccee-eccCc
Confidence            999999999999997533221  12223445577888999998899999988765  588731111  111111 12211


Q ss_pred             CCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCC-cce-EEEEECCCCCEEEEEEec
Q 019384          237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYP-TSI-AALSFSRDGRLLAVASSY  306 (342)
Q Consensus       237 ~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~-~~V-~~v~~spdg~~las~s~~  306 (342)
                      . + .+. ..-..+|.|+..++++|-.-..|-|+|.+.++.+..+..-. ..| .-.+|.|-+..+++|+..
T Consensus       417 t-~-Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s  485 (498)
T KOG4328|consen  417 T-G-RWL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNS  485 (498)
T ss_pred             c-c-ccc-cchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCc
Confidence            0 0 001 12235899999999999999999999999988777754322 233 456899999977777654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.83  E-value=2.3e-19  Score=147.01  Aligned_cols=293  Identities=15%  Similarity=0.139  Sum_probs=184.6

Q ss_pred             CCCCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee--ecCCceEEEEEeCCCCeEEEecCCcE
Q 019384            6 PPPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF--MHGGPVLDCCFHDDSSGFSASADHTV   83 (342)
Q Consensus         6 ~~~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~--~h~~~V~~~~~~~~~~~~s~s~D~~i   83 (342)
                      +||+-.+.|+ +|...|+++.|..+++ |.+|..-|.|++|++++.+-...+  .|...|+.+.-.+++++.+-+-|..+
T Consensus         2 ~pPdP~fvLR-p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L   79 (323)
T KOG0322|consen    2 VPPDPFFVLR-PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLL   79 (323)
T ss_pred             CCCCCeeEec-cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceE
Confidence            6899999998 9999999999998765 889999999999999886533332  46778888888888889999999999


Q ss_pred             EEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCC-cEEEEcCC---------CCCCcceeeee---ecCCCCcEE
Q 019384           84 RRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDK-SLKCWDPR---------GASGQERTLVG---TYPQPERVY  150 (342)
Q Consensus        84 ~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~-~I~iWd~~---------~~~~~~~~~~~---~~~~~~~v~  150 (342)
                      .+|.+.....  +..|.-.++++-|.+-.  +...+.-. ..-.++-+         .+.. .+..+.   .......+.
T Consensus        80 ~lw~ia~s~~--i~i~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D~g~~-tqv~i~dd~~~~Klgsvm  154 (323)
T KOG0322|consen   80 ILWTIAYSAF--ISIHSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQDGGDT-TQVQIADDSERSKLGSVM  154 (323)
T ss_pred             EEEEccCcce--EEEeeeeccccccccce--eccCCCcchhheecCCcccchhhhhccCcc-ceeEccCchhccccCcee
Confidence            9999876442  22344455555555411  11111100 01111111         0110 011111   011122344


Q ss_pred             EEecc---CC--eEEEEEcCCeEEEEeCCCCCCcccc--------cccccceeeEEEEEeeCCceEEEEccCCeEEEEEe
Q 019384          151 SLSLV---GN--RLVVATAGRHVNVYDLRNMSQPEQR--------RESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFF  217 (342)
Q Consensus       151 ~~s~~---~~--~~~~~s~d~~v~iwd~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~  217 (342)
                      ++...   +.  .++.|-.+|.+.+||+.++....+.        ....+...+.++.+.+.-..-+.++.+.....  |
T Consensus       155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~--~  232 (323)
T KOG0322|consen  155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVM--Y  232 (323)
T ss_pred             eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccccee--e
Confidence            44432   22  3556777899999999886322111        11122334555555543333344555554443  5


Q ss_pred             echhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCC
Q 019384          218 DLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDG  297 (342)
Q Consensus       218 d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg  297 (342)
                      ++........  ++......    +. .|+.+..-||++.+||+++|+.||||..++...+..++.|...|++++|+||.
T Consensus       233 Sl~~s~gslq--~~~e~~lk----np-Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~  305 (323)
T KOG0322|consen  233 SLNHSTGSLQ--IRKEITLK----NP-GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC  305 (323)
T ss_pred             eeccccCccc--ccceEEec----CC-CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC
Confidence            5433211111  11101100    00 37778889999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEeccccCCCCCCCCCcEEEEEc
Q 019384          298 RLLAVASSYTFEEGDKPHEPDAIFVRSV  325 (342)
Q Consensus       298 ~~las~s~~~~~~~~~~~~~~~~~~~~~  325 (342)
                      .++|++|.+.           -|=+|++
T Consensus       306 ~lmAaaskD~-----------rISLWkL  322 (323)
T KOG0322|consen  306 ELMAAASKDA-----------RISLWKL  322 (323)
T ss_pred             chhhhccCCc-----------eEEeeec
Confidence            9999998876           3777765

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.6e-17  Score=151.78  Aligned_cols=204  Identities=13%  Similarity=0.177  Sum_probs=145.0

Q ss_pred             CCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee-ecCCceEEEEEeCCCCe-EEEecCCcEEE
Q 019384            8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF-MHGGPVLDCCFHDDSSG-FSASADHTVRR   85 (342)
Q Consensus         8 ~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~-~h~~~V~~~~~~~~~~~-~s~s~D~~i~~   85 (342)
                      +..-.++.-+....|-+|+|+ ++.+|.|.+.+|+|.-||+.+.+.+... ...+.|++++..|.... ..++.||.+..
T Consensus        58 w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~  136 (691)
T KOG2048|consen   58 WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYD  136 (691)
T ss_pred             ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEE
Confidence            334444555556789999999 7778899999999999999887655443 45678999999876655 46778886555


Q ss_pred             EEeccCce---eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceee--eeecCC--CCcEEEEec-cCC
Q 019384           86 LVFSHGKE---DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTL--VGTYPQ--PERVYSLSL-VGN  157 (342)
Q Consensus        86 w~~~~~~~---~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~--~~~~~~--~~~v~~~s~-~~~  157 (342)
                      .+...+..   +.+...++.|.+++|+|++..|++|+.||.|++||..++.......  +.....  ...+.++-+ .++
T Consensus       137 ~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~  216 (691)
T KOG2048|consen  137 FSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS  216 (691)
T ss_pred             EecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC
Confidence            55554442   2344567899999999999999999999999999987654321111  111111  122333332 467


Q ss_pred             eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEE
Q 019384          158 RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAM  214 (342)
Q Consensus       158 ~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i  214 (342)
                      .|++|-..|+|.+||...+......  ..+...+.|++..+++..+.+++.|+.+..
T Consensus       217 tI~sgDS~G~V~FWd~~~gTLiqS~--~~h~adVl~Lav~~~~d~vfsaGvd~~ii~  271 (691)
T KOG2048|consen  217 TIASGDSAGTVTFWDSIFGTLIQSH--SCHDADVLALAVADNEDRVFSAGVDPKIIQ  271 (691)
T ss_pred             cEEEecCCceEEEEcccCcchhhhh--hhhhcceeEEEEcCCCCeEEEccCCCceEE
Confidence            8999988899999999876432211  123456889999999999999999998643

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.82  E-value=1.4e-18  Score=144.61  Aligned_cols=247  Identities=20%  Similarity=0.289  Sum_probs=164.3

Q ss_pred             cCCCCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCC---CeE-EEecCCcEEEEE
Q 019384           13 ELGNPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDS---SGF-SASADHTVRRLV   87 (342)
Q Consensus        13 ~~~~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~---~~~-s~s~D~~i~~w~   87 (342)
                      --.+.|.=+|.++.|-| |...+.|+|.|.++||||..+-...-.+...+.|++-+++|-.   .++ +|..|-.|++-|
T Consensus        95 ~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCD  174 (397)
T KOG4283|consen   95 QHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD  174 (397)
T ss_pred             cCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence            33467788999999999 6678889999999999999875554555677888888887532   244 445566799999


Q ss_pred             eccCce-eecccCCcceeEEEEeCCCCE-EEEeeCCCcEEEEcCCCCCCcceeeeeec------------CCCCcEEEEe
Q 019384           88 FSHGKE-DILGKHDAPVRCIEYSYAAGQ-VITGSWDKSLKCWDPRGASGQERTLVGTY------------PQPERVYSLS  153 (342)
Q Consensus        88 ~~~~~~-~~~~~h~~~V~~~~~~~~~~~-l~sgs~D~~I~iWd~~~~~~~~~~~~~~~------------~~~~~v~~~s  153 (342)
                      +..+.. ..+.+|.+.|.++.|+|..+. |+|||.||.||+||++...+.. ..+..+            .+..++..++
T Consensus       175 i~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf-~~lD~hn~k~~p~~~~n~ah~gkvngla  253 (397)
T KOG4283|consen  175 IASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCF-RVLDQHNTKRPPILKTNTAHYGKVNGLA  253 (397)
T ss_pred             ccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccccee-EEeecccCccCccccccccccceeeeee
Confidence            999884 578999999999999998876 5899999999999998653321 222211            2334566666


Q ss_pred             c--cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEe---eCCceEEEEccCCeEEEEEeechhhhhcccc
Q 019384          154 L--VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCY---PNGTGYALSSVEGRVAMEFFDLSEASQAKKY  228 (342)
Q Consensus       154 ~--~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~  228 (342)
                      +  ++..+++++.|..+++|+..+++............+...++++   .+...++.--.++.+  .++++-+....+. 
T Consensus       254 ~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~l--all~~~sgs~ir~-  330 (397)
T KOG4283|consen  254 WTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSL--ALLNLLEGSFVRR-  330 (397)
T ss_pred             ecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeE--EEEEccCceEEEe-
Confidence            5  4668899999999999999887543221111111111111111   111112211222222  3344433322222 


Q ss_pred             eeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          229 AFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       229 ~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                       +..|.+         .|+|.+|-|+=+...+|.-|+.|..|...
T Consensus       331 -l~~h~k---------~i~c~~~~~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  331 -LSTHLK---------RINCAAYRPDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             -eecccc---------eeeEEeecCchhhhhccccCCcccccccc
Confidence             233432         58999999998999999999999999763

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=5.7e-18  Score=142.13  Aligned_cols=275  Identities=13%  Similarity=0.165  Sum_probs=183.6

Q ss_pred             eEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCceeecccC
Q 019384           22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKEDILGKH   99 (342)
Q Consensus        22 V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~h   99 (342)
                      -.++.|++.|.+||+|+.||.|-|||..+..+ +...+|--+|.+++|+++++ ++++|.|..+.+||+..+....-...
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            67999999999999999999999999987653 33457999999999996665 57999999999999988875444445


Q ss_pred             CcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeec-----CCCCcEEEEeccCCeEEEEEcCCeEEEEeC
Q 019384          100 DAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTY-----PQPERVYSLSLVGNRLVVATAGRHVNVYDL  173 (342)
Q Consensus       100 ~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~-----~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~  173 (342)
                      ..+|+.+.|+|.. +.++.+-.+..=.+-++..+.   +..+...     ........+...|++|++|++-|.+.++|.
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~---h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK---HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCc---eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence            6889999999954 333333333322233332111   1111110     011111235666889999999999999999


Q ss_pred             CCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhc-ccceeeeEEecCCCCcee--eeeeEEE
Q 019384          174 RNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQA-KKYAFKCHRKSEAGRDIV--YPVNAIA  250 (342)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~-~~~~~~~h~~~~~~~~~~--~~v~~v~  250 (342)
                      .+.+.....+ ......+..+.++..|..+++.+.|..++  .|+..+.-.. +-.......+..   +.+  -+=.+|+
T Consensus       183 ~t~e~vas~r-its~~~IK~I~~s~~g~~liiNtsDRvIR--~ye~~di~~~~r~~e~e~~~K~q---DvVNk~~Wk~cc  256 (405)
T KOG1273|consen  183 ETLECVASFR-ITSVQAIKQIIVSRKGRFLIINTSDRVIR--TYEISDIDDEGRDGEVEPEHKLQ---DVVNKLQWKKCC  256 (405)
T ss_pred             chheeeeeee-echheeeeEEEEeccCcEEEEecCCceEE--EEehhhhcccCccCCcChhHHHH---HHHhhhhhhhee
Confidence            8864432111 11113456677888899999988887654  5776532111 000000000000   000  0235689


Q ss_pred             EcCCCCeEEEecCC-CeEEEEeCCCceeeeccCCCC-cceEEEEECCCCCEEEEEEe
Q 019384          251 FHPIYGTFATGGCD-GFVNVWDGNNKKRLYQYSKYP-TSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       251 ~sp~~~~l~sgs~D-g~I~iWd~~~~~~~~~~~~~~-~~V~~v~~spdg~~las~s~  305 (342)
                      |+.+|.+++.|+.. ..++||....|.+++.+.|-. ....++.|.|-...+++-.+
T Consensus       257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~s  313 (405)
T KOG1273|consen  257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIAS  313 (405)
T ss_pred             ecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccC
Confidence            99999999877743 479999999999999998877 46788999998888877654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.82  E-value=1.3e-18  Score=159.79  Aligned_cols=241  Identities=17%  Similarity=0.200  Sum_probs=178.5

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEe-CC---CCeEEEecCCcEEEEEeccCc
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFH-DD---SSGFSASADHTVRRLVFSHGK   92 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~-~~---~~~~s~s~D~~i~~w~~~~~~   92 (342)
                      ...+|.+|+.||+|++||+|..-|++|||++..-+. ...-+|...|.|+.|+ |.   ..+++|+-|..|.++|....-
T Consensus       458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny  537 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY  537 (1080)
T ss_pred             cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence            357999999999999999999999999999976543 3345799999999998 43   345699999999999987654


Q ss_pred             --eeecccCCcceeEEEEeCCC--CEEEEeeCCCcEEEEcCCC-CCCcceeeeee--cCCCCcEEEEeccC--CeEEEEE
Q 019384           93 --EDILGKHDAPVRCIEYSYAA--GQVITGSWDKSLKCWDPRG-ASGQERTLVGT--YPQPERVYSLSLVG--NRLVVAT  163 (342)
Q Consensus        93 --~~~~~~h~~~V~~~~~~~~~--~~l~sgs~D~~I~iWd~~~-~~~~~~~~~~~--~~~~~~v~~~s~~~--~~~~~~s  163 (342)
                        ...+.+|...|+++.|--.|  .+.++++.|+.|..--.+. ..+  ......  .....+++.+..++  +.++++.
T Consensus       538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g--~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c  615 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSG--RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC  615 (1080)
T ss_pred             chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCc--eeccccccccccceEEEeeeCCCcceEEEEe
Confidence              35688999999999998766  5689999999886432221 111  111111  11233455555554  5899999


Q ss_pred             cCCeEEEEeCCCCCCcccccc-cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCce
Q 019384          164 AGRHVNVYDLRNMSQPEQRRE-SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDI  242 (342)
Q Consensus       164 ~d~~v~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~  242 (342)
                      +|+.|+|||+.++++...... ....+....+...|.|.++++...|.++.  ++|+.....  .-.+.+|.+       
T Consensus       616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~--~~Df~sgEc--vA~m~GHsE-------  684 (1080)
T KOG1408|consen  616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC--FVDFVSGEC--VAQMTGHSE-------  684 (1080)
T ss_pred             cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceE--EEEeccchh--hhhhcCcch-------
Confidence            999999999998865433222 22334566778899999999999988765  577754322  222345544       


Q ss_pred             eeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          243 VYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       243 ~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                        .|+.+.|.+|-+.|++.+.||-|.||.+.
T Consensus       685 --~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  685 --AVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             --heeeeeecccchhheeecCCceEEEEECc
Confidence              58999999999999999999999999864

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=1.1e-17  Score=140.02  Aligned_cols=232  Identities=16%  Similarity=0.198  Sum_probs=162.5

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCcee
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKED   94 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~~   94 (342)
                      -.|...+.+.+|-++ ..+++|+-||.||++|+.++.......|.++|.++.+. ..+.+++||+|++|++||..+....
T Consensus        51 ~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~  129 (323)
T KOG1036|consen   51 FKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV  129 (323)
T ss_pred             eecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence            467889999999974 57889999999999999987766666799999999998 4667899999999999998864322


Q ss_pred             ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEE--Ee
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNV--YD  172 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~i--wd  172 (342)
                      .-..-.+.|.|+...  ++.|+.|..|..+.+||+++.....+..--..+...+.+++-+++..+++++-+|+|-+  +|
T Consensus       130 ~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d  207 (323)
T KOG1036|consen  130 GTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD  207 (323)
T ss_pred             cccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence            222234589998775  67899999999999999986443211100112223344445556677899999998665  44


Q ss_pred             CCCCCCc-------cc--ccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384          173 LRNMSQP-------EQ--RRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV  243 (342)
Q Consensus       173 ~~~~~~~-------~~--~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~  243 (342)
                      -+...+.       ..  .....+-+.++.++|+|-.+.+++|+.||.+.+  ||....+..+.+    |+-       .
T Consensus       208 ~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~--Wd~~~rKrl~q~----~~~-------~  274 (323)
T KOG1036|consen  208 DSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI--WDLFNRKRLKQL----AKY-------E  274 (323)
T ss_pred             CchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE--ccCcchhhhhhc----cCC-------C
Confidence            3311000       00  001122356788999999999999999998765  998543322221    111       1


Q ss_pred             eeeeEEEEcCCCCeEEEecC
Q 019384          244 YPVNAIAFHPIYGTFATGGC  263 (342)
Q Consensus       244 ~~v~~v~~sp~~~~l~sgs~  263 (342)
                      ..|.+++|+.+|..||+++.
T Consensus       275 ~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  275 TSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             CceEEEEeccCCCeEEEEec
Confidence            25899999999999999874

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=1.5e-18  Score=151.50  Aligned_cols=232  Identities=20%  Similarity=0.267  Sum_probs=160.3

Q ss_pred             CCeEEEEeCCCcEEEEECCCc--e----ee----------------eeeecCCceEEEEEeC--CCCeEEEecCCcEEEE
Q 019384           31 SDHLLVSSWDKSVRLYDASAN--V----LR----------------GEFMHGGPVLDCCFHD--DSSGFSASADHTVRRL   86 (342)
Q Consensus        31 ~~~l~s~s~Dgti~vwd~~~~--~----~~----------------~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i~~w   86 (342)
                      |+++|.|..|-.|.|||+.-.  .    .+                ...+|++.|.++.|.-  ..-+++||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            689999999999999997421  0    00                0124888888888863  3446799999999999


Q ss_pred             EeccCce-eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc-CCeEEEEE
Q 019384           87 VFSHGKE-DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV-GNRLVVAT  163 (342)
Q Consensus        87 ~~~~~~~-~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~-~~~~~~~s  163 (342)
                      |+.+++. ..+..|++.|.+++|+|.. ..|++||.|+++++.|.|.....  .....+......+.+.+. .+.+++++
T Consensus       272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s--~~~wk~~g~VEkv~w~~~se~~f~~~t  349 (463)
T KOG0270|consen  272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS--GKEWKFDGEVEKVAWDPHSENSFFVST  349 (463)
T ss_pred             EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc--CceEEeccceEEEEecCCCceeEEEec
Confidence            9999985 4567799999999999954 67899999999999999842221  111222233333344442 45788889


Q ss_pred             cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce-EEEEccCCeEEEEEeechhhh--hcccceeeeEEecCCCC
Q 019384          164 AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG-YALSSVEGRVAMEFFDLSEAS--QAKKYAFKCHRKSEAGR  240 (342)
Q Consensus       164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~s~~~~~~i~~~d~~~~~--~~~~~~~~~h~~~~~~~  240 (342)
                      .||+|+-+|+|+...+. ....++...+.++.+.+.... +++++.++.+.+  |++....  ......+.         
T Consensus       350 ddG~v~~~D~R~~~~~v-wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vkl--w~~~~~~~~~v~~~~~~---------  417 (463)
T KOG0270|consen  350 DDGTVYYFDIRNPGKPV-WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKL--WKFDVDSPKSVKEHSFK---------  417 (463)
T ss_pred             CCceEEeeecCCCCCce-eEEEeccCCcceEEecCCCCcceeeccccceEEE--EeecCCCCccccccccc---------
Confidence            99999999999875443 222344556778877766544 567788887765  6554322  22221111         


Q ss_pred             ceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCCceee
Q 019384          241 DIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNNKKRL  278 (342)
Q Consensus       241 ~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~~~~~  278 (342)
                        ++...|.++.|+-. +||.|+..+-++|||+.+...+
T Consensus       418 --~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  418 --LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             --ccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence              22355677777754 5788999999999998876544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.81  E-value=4.4e-18  Score=155.26  Aligned_cols=263  Identities=16%  Similarity=0.222  Sum_probs=183.9

Q ss_pred             CeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCceeeccc
Q 019384           21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKEDILGK   98 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~   98 (342)
                      .|+.++|-|||..|+.+. +..+.|||.+.|. +.+..+|++-|++++|+.++. +++|++|..+.+|.-.... ..-..
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkYS   91 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKYS   91 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeeec
Confidence            899999999999887664 5579999998875 456679999999999996655 5699999999999643322 22357


Q ss_pred             CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEEEeCCCC
Q 019384           99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNM  176 (342)
Q Consensus        99 h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~~~  176 (342)
                      |++.|.|+.|+|-...|+||+.. ..-+|..+.  +    .+..+....++.+.++  +|..++.|-.+|+|.+-+....
T Consensus        92 H~D~IQCMsFNP~~h~LasCsLs-dFglWS~~q--K----~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE  164 (1081)
T KOG1538|consen   92 HNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQ--K----SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE  164 (1081)
T ss_pred             cCCeeeEeecCchHHHhhhcchh-hccccChhh--h----hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence            99999999999988899999864 356787542  1    1222334456667776  5678999999999998865433


Q ss_pred             CCcccccccccceeeEEEEEeeCCc-----eEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEE
Q 019384          177 SQPEQRRESSLKYQTRCVRCYPNGT-----GYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF  251 (342)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  251 (342)
                      ......+....+.++.+++|.|...     .+++...+.+  +.++.+......+.            ......-.|+.+
T Consensus       165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT--LSFy~LsG~~Igk~------------r~L~FdP~CisY  230 (1081)
T KOG1538|consen  165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT--LSFYQLSGKQIGKD------------RALNFDPCCISY  230 (1081)
T ss_pred             cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce--eEEEEecceeeccc------------ccCCCCchhhee
Confidence            2222222122334577888887643     1222222222  23343322111100            111123468899


Q ss_pred             cCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       252 sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      .|+|+++..|+.|+.+++|-.+ |-.+.++-....+||.++..|+++++++|+-++
T Consensus       231 f~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG  285 (1081)
T KOG1538|consen  231 FTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG  285 (1081)
T ss_pred             ccCCcEEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEccCCceEEEEEccC
Confidence            9999999999999999999654 666777777788999999999999999999754

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.81  E-value=3.6e-18  Score=151.05  Aligned_cols=276  Identities=13%  Similarity=0.171  Sum_probs=185.8

Q ss_pred             ccCCCCCCCCeEEEEEcCCCCe-EEEEeCCCcEEEEECCCc--ee-eeeeecCCceEEEEEe-CCCCeEEEecCCcEEEE
Q 019384           12 RELGNPPSDGISNLRFSNHSDH-LLVSSWDKSVRLYDASAN--VL-RGEFMHGGPVLDCCFH-DDSSGFSASADHTVRRL   86 (342)
Q Consensus        12 ~~~~~~~~~~V~~l~fs~~~~~-l~s~s~Dgti~vwd~~~~--~~-~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w   86 (342)
                      +.+....+-+|+++.|+....+ +++.+.|..+++|.-...  .. +....-.+.-.|+... ....+++++..+.|++|
T Consensus        27 ~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiw  106 (673)
T KOG4378|consen   27 EYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIW  106 (673)
T ss_pred             ccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeeh
Confidence            3444444566999999987643 456678999999986543  21 1111111222222221 22456789999999999


Q ss_pred             EeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCC-CCcEEEEeccCC-eEEEEE
Q 019384           87 VFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ-PERVYSLSLVGN-RLVVAT  163 (342)
Q Consensus        87 ~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~-~~~v~~~s~~~~-~~~~~s  163 (342)
                      |+..+. .+.+.+|+..|+++.++..+.+||+++..|-|.|-.+.+...  ...+..... ..+.+.++.... .+.+++
T Consensus       107 dl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~--tt~f~~~sgqsvRll~ys~skr~lL~~as  184 (673)
T KOG4378|consen  107 DLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK--TTTFTIDSGQSVRLLRYSPSKRFLLSIAS  184 (673)
T ss_pred             hhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc--ccceecCCCCeEEEeecccccceeeEeec
Confidence            998554 356789999999999999999999999999999998765322  222322211 112334444433 567889


Q ss_pred             cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce-EEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCce
Q 019384          164 AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG-YALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDI  242 (342)
Q Consensus       164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~  242 (342)
                      .+|.|.+||+...+ +.......+..+...++|+|.... +++.+.|.++  .+||.+........  .          .
T Consensus       185 d~G~VtlwDv~g~s-p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki--~~yD~~s~~s~~~l--~----------y  249 (673)
T KOG4378|consen  185 DKGAVTLWDVQGMS-PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKI--NIYDIRSQASTDRL--T----------Y  249 (673)
T ss_pred             cCCeEEEEeccCCC-cccchhhhccCCcCcceecCCccceEEEecccceE--EEeeccccccccee--e----------e
Confidence            99999999997653 333233334455667888887654 4555666654  56998633222111  1          1


Q ss_pred             eeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCc-eeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          243 VYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNK-KRLYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       243 ~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~-~~~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                      .+|..+|+|+++|.+|+.|...|.|..||++.. ..+..+..|...|++++|=|-. .+++=++
T Consensus       250 ~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~-tvltkss  312 (673)
T KOG4378|consen  250 SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP-TVLTKSS  312 (673)
T ss_pred             cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc-eeeeccc
Confidence            237899999999999999999999999999854 5678888999999999996665 3444443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.80  E-value=2.1e-18  Score=145.47  Aligned_cols=248  Identities=18%  Similarity=0.211  Sum_probs=171.9

Q ss_pred             CCCCCeEEEEEcCC----CCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCC--CeEEEecCCcEEEEEec
Q 019384           17 PPSDGISNLRFSNH----SDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDS--SGFSASADHTVRRLVFS   89 (342)
Q Consensus        17 ~~~~~V~~l~fs~~----~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~--~~~s~s~D~~i~~w~~~   89 (342)
                      .|.+..+-++|+-+    ..+||.|+.-|.|||.|+..+.+ ....+|.+.|+.+.|.|..  .+++||.|.+||+|+++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            46777888888864    34788999999999999987654 3456899999999998765  56799999999999999


Q ss_pred             cCceee----cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCC---ccee----------eee----ec-----
Q 019384           90 HGKEDI----LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASG---QERT----------LVG----TY-----  143 (342)
Q Consensus        90 ~~~~~~----~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~---~~~~----------~~~----~~-----  143 (342)
                      +.....    +.+|.+.|.+++|+.++.+|+||+.|.+|++|++....-   ....          .+.    .+     
T Consensus       167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst  246 (385)
T KOG1034|consen  167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST  246 (385)
T ss_pred             CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence            988543    367999999999999999999999999999999862110   0000          000    00     


Q ss_pred             --CCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCccc---ccc------cccce-----eeEEEEEeeCCceEEEEc
Q 019384          144 --PQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQ---RRE------SSLKY-----QTRCVRCYPNGTGYALSS  207 (342)
Q Consensus       144 --~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~---~~~------~~~~~-----~~~~v~~~~~~~~~~~~s  207 (342)
                        .|...|-++-+-++.+++=+.++.|..|..-.......   ..+      ..++.     ....+++.|-++.++++.
T Consensus       247 ~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn  326 (385)
T KOG1034|consen  247 TDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN  326 (385)
T ss_pred             cccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc
Confidence              01111222333467788889999999997622111100   000      00111     122345667778889999


Q ss_pred             cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          208 VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       208 ~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      +.|++  ++||++.........+..+..       ...|...+|+.|+..|+...+|++|.-||..
T Consensus       327 q~g~v--~vwdL~~~ep~~~ttl~~s~~-------~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  327 QSGKV--YVWDLDNNEPPKCTTLTHSKS-------GSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CCCcE--EEEECCCCCCccCceEEeccc-------cceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            98876  569987554433333332221       1258889999999999999999999999864

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.80  E-value=3.8e-18  Score=149.51  Aligned_cols=258  Identities=19%  Similarity=0.252  Sum_probs=169.7

Q ss_pred             cCCCCCCCccCCCCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCCceeeeee---ecCCceEEEEEe-CCCCeEEEe
Q 019384            4 VHPPPTSGRELGNPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASANVLRGEF---MHGGPVLDCCFH-DDSSGFSAS   78 (342)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~~~~~~~---~h~~~V~~~~~~-~~~~~~s~s   78 (342)
                      +..|-..+.-+.++|+..|.++.|+|. ..++++.|+||+||+-|+.+......+   .-...+..+.|+ .+..++.+.
T Consensus       219 ~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~  298 (498)
T KOG4328|consen  219 TQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD  298 (498)
T ss_pred             CCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEee
Confidence            345666778888999999999999994 578999999999999999865322221   122345567776 445566766


Q ss_pred             cCCcEEEEEeccCce--eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcE--EEEe
Q 019384           79 ADHTVRRLVFSHGKE--DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERV--YSLS  153 (342)
Q Consensus        79 ~D~~i~~w~~~~~~~--~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v--~~~s  153 (342)
                      .=|...+||..+...  ..+.-|...|.+++++|-. .+|||+|.|++.+|||+|.-.+.....+....|...|  ..|+
T Consensus       299 ~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS  378 (498)
T KOG4328|consen  299 NVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS  378 (498)
T ss_pred             cccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence            666888999988763  4567899999999999965 5789999999999999986433221123333333333  4466


Q ss_pred             ccCCeEEEEEcCCeEEEEeCCCCCC---cccccccc--cceeeE--EEEEeeCCceEEEEccCCeEEEEEeechhhhhcc
Q 019384          154 LVGNRLVVATAGRHVNVYDLRNMSQ---PEQRRESS--LKYQTR--CVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAK  226 (342)
Q Consensus       154 ~~~~~~~~~s~d~~v~iwd~~~~~~---~~~~~~~~--~~~~~~--~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~  226 (342)
                      +++..+++.++|.+|++||......   +.....+.  ...+.+  ...|.|+...++++..-..+  -+||....+   
T Consensus       379 Ps~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~I--Dv~~~~~~q---  453 (498)
T KOG4328|consen  379 PSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPI--DVFDGNGGQ---  453 (498)
T ss_pred             CCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcce--eEEcCCCCE---
Confidence            6666799999999999999852211   11100011  111122  23588988888888766654  457764322   


Q ss_pred             cceeeeEEecCCCCceeeeeeE-EEEcCCCCeE-EEecCCCeEEEEeCC
Q 019384          227 KYAFKCHRKSEAGRDIVYPVNA-IAFHPIYGTF-ATGGCDGFVNVWDGN  273 (342)
Q Consensus       227 ~~~~~~h~~~~~~~~~~~~v~~-v~~sp~~~~l-~sgs~Dg~I~iWd~~  273 (342)
                       .....|....      ..|.+ ..|||-+..+ +.|+..|.|+||.-+
T Consensus       454 -~v~el~~P~~------~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  454 -MVCELHDPES------STIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             -EeeeccCccc------cccccceeecccccceeccCCccceEEEEecC
Confidence             1122222211      12444 3799998845 555678899999644

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=5e-19  Score=164.88  Aligned_cols=262  Identities=16%  Similarity=0.208  Sum_probs=173.3

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc-e
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK-E   93 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~-~   93 (342)
                      +|-++|+|+.|+..|.+++||+.|..+|||...++.+. ...+|++.|+.++.+....+ .++|.|..|++|-+..+. .
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv  267 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV  267 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH
Confidence            45588999999999999999999999999998776654 44689999999999855554 589999999999998877 4


Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCC-CCcceeeeeecCCCCcEE--EEeccCCeEEEEEcCCeEEE
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA-SGQERTLVGTYPQPERVY--SLSLVGNRLVVATAGRHVNV  170 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~-~~~~~~~~~~~~~~~~v~--~~s~~~~~~~~~s~d~~v~i  170 (342)
                      .++.+|++.|++++|+|-    .+.+.||++++||.+-. .......... .....+.  -+.-.+..+++++.|++-+.
T Consensus       268 svLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~-~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n  342 (1113)
T KOG0644|consen  268 SVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKF-TEKDLVDSILFENNGDRFLTGSRDGEARN  342 (1113)
T ss_pred             HHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCc-ccccceeeeeccccccccccccCCccccc
Confidence            578999999999999994    38899999999997611 1100001110 0111122  23334567888888887776


Q ss_pred             EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384          171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA  250 (342)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  250 (342)
                      |.+....-.    .    .....+....+-..+ +.+.-....+..|+..+.+..  ..+.+|         ...+..+.
T Consensus       343 ~e~~~l~~~----~----~~lif~t~ssd~~~~-~~~ar~~~~~~vwnl~~g~l~--H~l~gh---------sd~~yvLd  402 (1113)
T KOG0644|consen  343 HEFEQLAWR----S----NLLIFVTRSSDLSSI-VVTARNDHRLCVWNLYTGQLL--HNLMGH---------SDEVYVLD  402 (1113)
T ss_pred             chhhHhhhh----c----cceEEEecccccccc-ceeeeeeeEeeeeecccchhh--hhhccc---------ccceeeee
Confidence            654321100    0    001111111111111 111223345566777544222  112222         23577889


Q ss_pred             EcCCCCeE-EEecCCCeEEEEeCCCceeeecc-CCCCcceEEEEECCCCCEEEEEE
Q 019384          251 FHPIYGTF-ATGGCDGFVNVWDGNNKKRLYQY-SKYPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       251 ~sp~~~~l-~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~V~~v~~spdg~~las~s  304 (342)
                      +||-+..+ .+++.||...|||+-.+..++.+ .+| ..+..-+||+||+.++...
T Consensus       403 ~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd  457 (1113)
T KOG0644|consen  403 VHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSD  457 (1113)
T ss_pred             ecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCC
Confidence            99976654 78999999999999877766544 454 5677899999999887554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=6.4e-18  Score=148.22  Aligned_cols=248  Identities=17%  Similarity=0.197  Sum_probs=177.3

Q ss_pred             CCceEEEEEeCCCCe-EEEecCCcEEEEEeccCceee---cccCCcceeEEEEeCCCC-EEEEeeCCCcEEEEcCCCCCC
Q 019384           60 GGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDI---LGKHDAPVRCIEYSYAAG-QVITGSWDKSLKCWDPRGASG  134 (342)
Q Consensus        60 ~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~~~---~~~h~~~V~~~~~~~~~~-~l~sgs~D~~I~iWd~~~~~~  134 (342)
                      .++|+++.|+|...+ ++|+.|++++++-++...-..   +.--..+|.+++|.|+|. .+++++--.....||+.+...
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            468999999987765 699999999999987665222   222357899999999998 889999989999999986543


Q ss_pred             cceeeeeec-CCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEE
Q 019384          135 QERTLVGTY-PQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA  213 (342)
Q Consensus       135 ~~~~~~~~~-~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~  213 (342)
                      ......... +.....+.++.++++|++++..|.|.+.-..++...   ..-.+.+.+..+.|+.+++.+++++.+|.  
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli---~s~KieG~v~~~~fsSdsk~l~~~~~~Ge--  367 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI---TSFKIEGVVSDFTFSSDSKELLASGGTGE--  367 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhh---heeeeccEEeeEEEecCCcEEEEEcCCce--
Confidence            211111111 122345678888899999999999999887765321   11234466788889999998888888885  


Q ss_pred             EEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC------ceeeeccCCCCcc
Q 019384          214 MEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN------KKRLYQYSKYPTS  287 (342)
Q Consensus       214 i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~------~~~~~~~~~~~~~  287 (342)
                      +++||++......+|.-.+..          -=.++|.++++.+||+||..|.|.|||.++      .+++..+..-...
T Consensus       368 V~v~nl~~~~~~~rf~D~G~v----------~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~  437 (514)
T KOG2055|consen  368 VYVWNLRQNSCLHRFVDDGSV----------HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA  437 (514)
T ss_pred             EEEEecCCcceEEEEeecCcc----------ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhee
Confidence            477999765433333222110          124678889999999999999999999653      4567777777788


Q ss_pred             eEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEE
Q 019384          288 IAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFV  322 (342)
Q Consensus       288 V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~  322 (342)
                      |.+|+|+||+++||.+|.-.-..=+..+-|++-+-
T Consensus       438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF  472 (514)
T KOG2055|consen  438 ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF  472 (514)
T ss_pred             eeeeeeCcchhhhhhhhhccccceEEEeccceeee
Confidence            99999999999999998643222223444444443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.79  E-value=1.5e-17  Score=151.14  Aligned_cols=162  Identities=23%  Similarity=0.264  Sum_probs=113.6

Q ss_pred             cCCCCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCce---e---eeeeecCC-ceEEEEEeC-CCCeEEEecCCcE
Q 019384           13 ELGNPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANV---L---RGEFMHGG-PVLDCCFHD-DSSGFSASADHTV   83 (342)
Q Consensus        13 ~~~~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~---~---~~~~~h~~-~V~~~~~~~-~~~~~s~s~D~~i   83 (342)
                      .+...|++.|+.+.|+| +..+|||||.|..|+||.+..+.   +   ...++|++ .|-++.|++ .+.++..+.-+.+
T Consensus        73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v  152 (1012)
T KOG1445|consen   73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSV  152 (1012)
T ss_pred             ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceE
Confidence            34468999999999999 56789999999999999997432   2   11234554 456888973 3334444556889


Q ss_pred             EEEEeccCcee-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC--eEE
Q 019384           84 RRLVFSHGKED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN--RLV  160 (342)
Q Consensus        84 ~~w~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~--~~~  160 (342)
                      .+||+.+++.. -+.+|.+.|.+..|+.||.+|+++..|+.|+|||.+.... ..+....+... +-..+.+-|+  +++
T Consensus       153 ~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~-piQ~te~H~~~-rdsRv~w~Gn~~rli  230 (1012)
T KOG1445|consen  153 YITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASME-PIQTTEGHGGM-RDSRVLWAGNWERLI  230 (1012)
T ss_pred             EEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCC-ccccccccccc-hhheeeeccchhhhh
Confidence            99999998854 5789999999999999999999999999999999985322 22222333221 2223444454  455


Q ss_pred             EEEcC----CeEEEEeCCCC
Q 019384          161 VATAG----RHVNVYDLRNM  176 (342)
Q Consensus       161 ~~s~d----~~v~iwd~~~~  176 (342)
                      +.+.+    ..|++||.+..
T Consensus       231 sTGF~~~R~reV~~~Dtr~f  250 (1012)
T KOG1445|consen  231 STGFTTKRIREVRAYDTRKF  250 (1012)
T ss_pred             hcccchhhheeeeeeecccc
Confidence            44433    35888887653

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.78  E-value=2.9e-17  Score=142.12  Aligned_cols=276  Identities=18%  Similarity=0.205  Sum_probs=169.6

Q ss_pred             CCCeEEEEEcCCCC-eEEEEeCCCcEEEEECCCc-------e---eeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEE
Q 019384           19 SDGISNLRFSNHSD-HLLVSSWDKSVRLYDASAN-------V---LRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRL   86 (342)
Q Consensus        19 ~~~V~~l~fs~~~~-~l~s~s~Dgti~vwd~~~~-------~---~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w   86 (342)
                      ...|+++.|.+++. .||||+.|..||||.+...       +   +-.+..|...|++|.|++++.+ ++|+.++.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            56789999999776 9999999999999998532       1   1122369999999999987765 588888999999


Q ss_pred             Eec--------c-----Cc----eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcE
Q 019384           87 VFS--------H-----GK----EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERV  149 (342)
Q Consensus        87 ~~~--------~-----~~----~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v  149 (342)
                      -..        +     .+    ...+.+|...|+.++|+|++..+++++.|.++++||+..+..  ...+..+.+-..-
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l--~~~~~dh~~yvqg  170 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL--LAILDDHEHYVQG  170 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee--Eeeccccccccce
Confidence            765        2     11    134678999999999999999999999999999999975432  2233333332333


Q ss_pred             EEEeccCCeEEEEEcCCeEEEEeCCCCCCc-------------------cccccc--ccceeeEEEEEeeCCceEEEEcc
Q 019384          150 YSLSLVGNRLVVATAGRHVNVYDLRNMSQP-------------------EQRRES--SLKYQTRCVRCYPNGTGYALSSV  208 (342)
Q Consensus       150 ~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~-------------------~~~~~~--~~~~~~~~v~~~~~~~~~~~~s~  208 (342)
                      +++++....+++-+.|...+.+.+......                   ..+.-+  .++.-...++|.|+|..+++.+.
T Consensus       171 vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag  250 (434)
T KOG1009|consen  171 VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG  250 (434)
T ss_pred             eecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence            334333445666666654444443221110                   000000  01111234567888887765432


Q ss_pred             ----CCeE---EEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcC------------------CCCeEEEecC
Q 019384          209 ----EGRV---AMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP------------------IYGTFATGGC  263 (342)
Q Consensus       209 ----~~~~---~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp------------------~~~~l~sgs~  263 (342)
                          ++.+   ..++|+-..-+.+     .+|....     ..++.++.|+|                  .+..+|.+..
T Consensus       251 ~~~~g~~~~~n~tYvfsrk~l~rP-----~~~lp~~-----~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~  320 (434)
T KOG1009|consen  251 LFKVGGGVFRNTSYVFSRKDLKRP-----AARLPSP-----KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK  320 (434)
T ss_pred             eeeeCCceeeceeEeeccccccCc-----eeecCCC-----CcceEEEEeeeeEEEeccccccccccccccceEEEEeec
Confidence                2221   1123332111000     0111100     11233344443                  2333455554


Q ss_pred             CCeEEEEeCCCceeeeccC-CCCcceEEEEECCCCCEEEEEEecc
Q 019384          264 DGFVNVWDGNNKKRLYQYS-KYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       264 Dg~I~iWd~~~~~~~~~~~-~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                       ..|+|||.+....+.... -|-..|++++||+||..|+.+|-++
T Consensus       321 -~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DG  364 (434)
T KOG1009|consen  321 -NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDG  364 (434)
T ss_pred             -ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence             589999999876665433 4778899999999999999988654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=5.4e-17  Score=139.95  Aligned_cols=280  Identities=17%  Similarity=0.210  Sum_probs=188.9

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC------ceeeeeee--cCCceEEEEEe-CCCCeEEEecCCcEEEE
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA------NVLRGEFM--HGGPVLDCCFH-DDSSGFSASADHTVRRL   86 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~------~~~~~~~~--h~~~V~~~~~~-~~~~~~s~s~D~~i~~w   86 (342)
                      .+|.+.|++|.||.+++.||+|+.|-.++||....      .+.+...+  |...|.|++|. .+..+++|..++++.+.
T Consensus        53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H  132 (609)
T KOG4227|consen   53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH  132 (609)
T ss_pred             hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence            37889999999999999999999999999999743      34444444  55789999997 45556799999999999


Q ss_pred             EeccCceeecccCCc---ceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCC-cceeeeeecCCCCcEEEEecc---CCeE
Q 019384           87 VFSHGKEDILGKHDA---PVRCIEYSYAAGQVITGSWDKSLKCWDPRGASG-QERTLVGTYPQPERVYSLSLV---GNRL  159 (342)
Q Consensus        87 ~~~~~~~~~~~~h~~---~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~-~~~~~~~~~~~~~~v~~~s~~---~~~~  159 (342)
                      |+++........|..   .|+.+..+|.++.|++.+.++.|.+||.+.... ....+..  ..+....+.-++   +..|
T Consensus       133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A--N~~~~F~t~~F~P~~P~Li  210 (609)
T KOG4227|consen  133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA--NSGKNFYTAEFHPETPALI  210 (609)
T ss_pred             ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec--CCCccceeeeecCCCceeE
Confidence            999987655555554   899999999989999999999999999874321 1111112  122223333343   4478


Q ss_pred             EEEEcCCeEEEEeCCCCCCcccccccccceee-----EEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceee-eE
Q 019384          160 VVATAGRHVNVYDLRNMSQPEQRRESSLKYQT-----RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFK-CH  233 (342)
Q Consensus       160 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~-~h  233 (342)
                      ++++..+.+.+||.+....+..+..-....+.     ..+.|+|+|+.++..-- +..- .+||+...   +.+.++ .|
T Consensus       211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR-~~~P-~~~D~~S~---R~~V~k~D~  285 (609)
T KOG4227|consen  211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR-GKCP-LYFDFISQ---RCFVLKSDH  285 (609)
T ss_pred             EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc-cCCC-EEeeeecc---cceeEeccC
Confidence            88888888999999987655433322111111     35678888876643321 1111 24565321   112221 11


Q ss_pred             EecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC-----c------------------eeeeccCCCCcceEE
Q 019384          234 RKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN-----K------------------KRLYQYSKYPTSIAA  290 (342)
Q Consensus       234 ~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~-----~------------------~~~~~~~~~~~~V~~  290 (342)
                      ..  .+.-....+-+++|--|. .+++||.+=.|++|.+-.     +                  +.+..+++|.+-++.
T Consensus       286 N~--~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ  362 (609)
T KOG4227|consen  286 NP--NGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ  362 (609)
T ss_pred             CC--Ccceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence            11  121222346678887654 499999999999997531     1                  123467899999999


Q ss_pred             EEECCCCCEEEEEEe
Q 019384          291 LSFSRDGRLLAVASS  305 (342)
Q Consensus       291 v~~spdg~~las~s~  305 (342)
                      +.|+|-..+|++++-
T Consensus       363 VRF~~H~~~l~SSGV  377 (609)
T KOG4227|consen  363 VRFSQHNNLLVSSGV  377 (609)
T ss_pred             eeecCCcceEeccch
Confidence            999999888876653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.77  E-value=2.4e-17  Score=145.82  Aligned_cols=259  Identities=17%  Similarity=0.232  Sum_probs=165.9

Q ss_pred             EEeCCCcEEEEECCCceeeeeeecC---CceEEEEEeCCCCeEEEe--cCCcEEEEEeccC--ceeeccc-CCcceeEEE
Q 019384           36 VSSWDKSVRLYDASANVLRGEFMHG---GPVLDCCFHDDSSGFSAS--ADHTVRRLVFSHG--KEDILGK-HDAPVRCIE  107 (342)
Q Consensus        36 s~s~Dgti~vwd~~~~~~~~~~~h~---~~V~~~~~~~~~~~~s~s--~D~~i~~w~~~~~--~~~~~~~-h~~~V~~~~  107 (342)
                      .+|...+++|||...-.....+.|.   -.+..++|.....+++++  .|..+++|.-...  ....++. ..+.-.|++
T Consensus         7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~   86 (673)
T KOG4378|consen    7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVA   86 (673)
T ss_pred             eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHh
Confidence            3444457999999765444444332   238899997655565554  5666788864433  1222211 112333444


Q ss_pred             EeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc--CCeEEEEEcCCeEEEEeCCCCCCccccccc
Q 019384          108 YSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV--GNRLVVATAGRHVNVYDLRNMSQPEQRRES  185 (342)
Q Consensus       108 ~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~  185 (342)
                      .....-++++|+..+.|+|||++.  +.....+..+  ..+|..+.++  ..+|++++.+|+|.+-.+.++... ..+..
T Consensus        87 ~~s~S~y~~sgG~~~~Vkiwdl~~--kl~hr~lkdh--~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t-t~f~~  161 (673)
T KOG4378|consen   87 CASQSLYEISGGQSGCVKIWDLRA--KLIHRFLKDH--QSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT-TTFTI  161 (673)
T ss_pred             hhhcceeeeccCcCceeeehhhHH--HHHhhhccCC--cceeEEEEecCCcceeEEeccCCcEEEEecccCccc-cceec
Confidence            333446899999999999999973  2222233333  3456666654  568999999999999998876332 22222


Q ss_pred             ccceeeEEEEEeeCCceE-EEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEecC
Q 019384          186 SLKYQTRCVRCYPNGTGY-ALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGGC  263 (342)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~-~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~  263 (342)
                      .....+.-+.++|..+.+ .+++.+|.+  .+||+........+ ...|.         .|...|+|+|.++ .|++-+.
T Consensus       162 ~sgqsvRll~ys~skr~lL~~asd~G~V--tlwDv~g~sp~~~~-~~~Hs---------AP~~gicfspsne~l~vsVG~  229 (673)
T KOG4378|consen  162 DSGQSVRLLRYSPSKRFLLSIASDKGAV--TLWDVQGMSPIFHA-SEAHS---------APCRGICFSPSNEALLVSVGY  229 (673)
T ss_pred             CCCCeEEEeecccccceeeEeeccCCeE--EEEeccCCCcccch-hhhcc---------CCcCcceecCCccceEEEecc
Confidence            222334567788876654 455677766  56998543322222 23343         2678899999877 5688999


Q ss_pred             CCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe------ccccCCC
Q 019384          264 DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS------YTFEEGD  312 (342)
Q Consensus       264 Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~------~~~~~~~  312 (342)
                      |..|++||....+....+. +..+...++|+++|.+|++|.+      +|+++.+
T Consensus       230 Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  230 DKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             cceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence            9999999998765544432 4457899999999999999997      5666554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.76  E-value=7.7e-17  Score=136.07  Aligned_cols=283  Identities=18%  Similarity=0.287  Sum_probs=180.0

Q ss_pred             cCCCCCCCCeEEEEEcC-----CCCeEEEEeCCCcEEEEECCCce---eeeee---ecCCceEEEEEe-C----CCCeEE
Q 019384           13 ELGNPPSDGISNLRFSN-----HSDHLLVSSWDKSVRLYDASANV---LRGEF---MHGGPVLDCCFH-D----DSSGFS   76 (342)
Q Consensus        13 ~~~~~~~~~V~~l~fs~-----~~~~l~s~s~Dgti~vwd~~~~~---~~~~~---~h~~~V~~~~~~-~----~~~~~s   76 (342)
                      .|.+.|...|+.++|++     +.+.+||++. .++.||......   +...+   .|...-..|+|. +    +-.++.
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~  110 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA  110 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence            45678889999999995     3345565554 578999975432   22222   256677888886 2    123567


Q ss_pred             EecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-CCCcEEEEe
Q 019384           77 ASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYP-QPERVYSLS  153 (342)
Q Consensus        77 ~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~v~~~s  153 (342)
                      |+.-|.|++.|+.++. ...+.+|+..|+.+.+.|+. ++++|+|.|.+||+|++++..+  ...++..+ |-..|.+++
T Consensus       111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C--v~VfGG~egHrdeVLSvD  188 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC--VAVFGGVEGHRDEVLSVD  188 (385)
T ss_pred             ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE--EEEecccccccCcEEEEE
Confidence            8888999999998877 45689999999999999976 6889999999999999986543  23344332 334566655


Q ss_pred             c--cCCeEEEEEcCCeEEEEeCCCCCCccc--cc--------c-------ccc---------ceeeEEEEEeeCCceEEE
Q 019384          154 L--VGNRLVVATAGRHVNVYDLRNMSQPEQ--RR--------E-------SSL---------KYQTRCVRCYPNGTGYAL  205 (342)
Q Consensus       154 ~--~~~~~~~~s~d~~v~iwd~~~~~~~~~--~~--------~-------~~~---------~~~~~~v~~~~~~~~~~~  205 (342)
                      +  ++++|++++-|-.+++|++...+....  ..        .       .++         ...+.|+.|.  |..+++
T Consensus       189 ~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilS  266 (385)
T KOG1034|consen  189 FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILS  266 (385)
T ss_pred             EcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheee
Confidence            5  577999999999999999974321100  00        0       000         0011122222  244556


Q ss_pred             EccCCeEEEEEeechhhhh----ccc----ceeeeEEecCCCCceeeeeeEE--EEcCCCCeEEEecCCCeEEEEeCCCc
Q 019384          206 SSVEGRVAMEFFDLSEASQ----AKK----YAFKCHRKSEAGRDIVYPVNAI--AFHPIYGTFATGGCDGFVNVWDGNNK  275 (342)
Q Consensus       206 ~s~~~~~~i~~~d~~~~~~----~~~----~~~~~h~~~~~~~~~~~~v~~v--~~sp~~~~l~sgs~Dg~I~iWd~~~~  275 (342)
                      -+.++.+.  +|-...-..    .+.    ..+.++-+..     +..|.-+  +|.|-+++||.|...|.|++||+++.
T Consensus       267 kscenaI~--~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~-----~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~  339 (385)
T KOG1034|consen  267 KSCENAIV--CWKPGKLEESIHNVKPPESATTILGEFDYP-----MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN  339 (385)
T ss_pred             cccCceEE--EEecchhhhhhhccCCCccceeeeeEeccC-----ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence            56666544  455411000    000    0011111100     0123334  56677899999999999999999865


Q ss_pred             eee--ecc--CCCCcceEEEEECCCCCEEEEEEecc
Q 019384          276 KRL--YQY--SKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       276 ~~~--~~~--~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      ...  .++  ......|...+||.||.+|+..+.+.
T Consensus       340 ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~  375 (385)
T KOG1034|consen  340 EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDG  375 (385)
T ss_pred             CCccCceEEeccccceeeeeeecccCcEEEEEeCCC
Confidence            432  222  23346899999999999988877543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=8.4e-19  Score=161.18  Aligned_cols=187  Identities=18%  Similarity=0.192  Sum_probs=147.2

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc-
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK-   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~-   92 (342)
                      ..|+..|-+|.|+++..+|++|+.||+||+||+..++ .+.+.+|...+..+.|+|-+.. ++++.|..+++||..... 
T Consensus        67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc  146 (825)
T KOG0267|consen   67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC  146 (825)
T ss_pred             eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCc
Confidence            5789999999999999999999999999999998776 4566789999999999986654 578999999999998555 


Q ss_pred             eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-CCCcEEEEeccCC--eEEEEEcCCeEE
Q 019384           93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP-QPERVYSLSLVGN--RLVVATAGRHVN  169 (342)
Q Consensus        93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~v~~~s~~~~--~~~~~s~d~~v~  169 (342)
                      ...+.+|...|.+++|+|+|.++++|+.|.+++|||+..+.     ++..++ ++..+..+.+++.  .++.|+.|++++
T Consensus       147 ~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk-----~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~  221 (825)
T KOG0267|consen  147 SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK-----LSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR  221 (825)
T ss_pred             eeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc-----cccccccccccccccccCchhhhhccCCCCceee
Confidence            45677899999999999999999999999999999986432     222332 4455555666554  567899999999


Q ss_pred             EEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC
Q 019384          170 VYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE  209 (342)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~  209 (342)
                      +||+++......  .......+.|.+|.|++..+++|...
T Consensus       222 f~dletfe~I~s--~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  222 FWDLETFEVISS--GKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             eeccceeEEeec--cCCccCCceeeeecCCceeeecCchh
Confidence            999997533211  11123457788999999877776543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.2e-16  Score=140.38  Aligned_cols=220  Identities=18%  Similarity=0.215  Sum_probs=159.0

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccC-----
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHG-----   91 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~-----   91 (342)
                      .+-|.+|+-+|+|.+|+.|.--|.+.+|.+++|+++.. .+|=++|+++.|+.|+. ++|||.||.|.+|.+..-     
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            45689999999999999888999999999999986544 47889999999996655 579999999999986321     


Q ss_pred             -----ceeecccCCcceeEEEEeCC--CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc
Q 019384           92 -----KEDILGKHDAPVRCIEYSYA--AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA  164 (342)
Q Consensus        92 -----~~~~~~~h~~~V~~~~~~~~--~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~  164 (342)
                           ....+..|+-+|+.+...+.  ..+|+|+|.|.+||+||+..+...  . ...+......+.+++....+.+|+.
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL--l-ti~fp~si~av~lDpae~~~yiGt~  237 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL--L-TITFPSSIKAVALDPAERVVYIGTE  237 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee--E-EEecCCcceeEEEcccccEEEecCC
Confidence                 12357889999999887764  358999999999999999754321  1 1122333444556666678899999


Q ss_pred             CCeEEEEeCCCCCCccc--------------ccccccce--eeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccc
Q 019384          165 GRHVNVYDLRNMSQPEQ--------------RRESSLKY--QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKY  228 (342)
Q Consensus       165 d~~v~iwd~~~~~~~~~--------------~~~~~~~~--~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~  228 (342)
                      +|.|.+.++-.......              ........  .++|++.+-||..+++|+.||.+.+  ||....+..+..
T Consensus       238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv--Wdi~S~Q~iRtl  315 (476)
T KOG0646|consen  238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCV--WDIYSKQCIRTL  315 (476)
T ss_pred             cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEE--EecchHHHHHHH
Confidence            99998888754321000              00111223  6899999999999999999998764  998544333322


Q ss_pred             eeeeEEecCCCCceeeeeeEEEEcCC
Q 019384          229 AFKCHRKSEAGRDIVYPVNAIAFHPI  254 (342)
Q Consensus       229 ~~~~h~~~~~~~~~~~~v~~v~~sp~  254 (342)
                      .   |        ..++|+.+.+.|-
T Consensus       316 ~---~--------~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  316 Q---T--------SKGPVTNLQINPL  330 (476)
T ss_pred             h---h--------hccccceeEeecc
Confidence            1   1        1237888888664

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=6.3e-17  Score=141.43  Aligned_cols=202  Identities=19%  Similarity=0.213  Sum_probs=144.6

Q ss_pred             CCCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCCceeeeeee-cCCceEEEEEeC--CCCeEEEecCCcEEEEEecc
Q 019384           15 GNPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHD--DSSGFSASADHTVRRLVFSH   90 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~~~~~~~~-h~~~V~~~~~~~--~~~~~s~s~D~~i~~w~~~~   90 (342)
                      +..|.+.|-+|+|... .+.|||||.|.||++||+.++++...+. |++.|.++.|.+  ...+++||.|+++.+.|.+.
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            3579999999999986 4678999999999999999998776665 889999999974  34568999999999999875


Q ss_pred             Cc-eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---CCeEEEEEcC
Q 019384           91 GK-EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---GNRLVVATAG  165 (342)
Q Consensus        91 ~~-~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~~~~~~~s~d  165 (342)
                      .. ....-...+.|-.++|.|.. ..++++..||+++-+|+|+... ....+..|..  .|.+++.+   ++.+++++.|
T Consensus       319 ~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d  395 (463)
T KOG0270|consen  319 PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-PVWTLKAHDD--EISGLSVNIQTPGLLSTASTD  395 (463)
T ss_pred             ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-ceeEEEeccC--CcceEEecCCCCcceeecccc
Confidence            32 12223345778999999866 4678889999999999997543 2333444444  44455553   5689999999


Q ss_pred             CeEEEEeCCCCCCcccccccccc-eeeEEEEEeeCCceE-EEEccCCeEEEEEeechhh
Q 019384          166 RHVNVYDLRNMSQPEQRRESSLK-YQTRCVRCYPNGTGY-ALSSVEGRVAMEFFDLSEA  222 (342)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~s~~~~~~i~~~d~~~~  222 (342)
                      +.|++|++...+. .....+.+. ....|.++.|+-..+ ++++..+  .+++||+...
T Consensus       396 ~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~--~~~vwd~~~~  451 (463)
T KOG0270|consen  396 KVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKA--VLRVWDIFTN  451 (463)
T ss_pred             ceEEEEeecCCCC-cccccccccccceeecccCCCcceEEEecCccc--eEEEeecccC
Confidence            9999999876432 111122222 234566777776554 4555554  4567997543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.75  E-value=3.6e-16  Score=130.09  Aligned_cols=273  Identities=19%  Similarity=0.291  Sum_probs=181.9

Q ss_pred             CeEEEEEcC---CCCeEEEEeC----CCcEEEEECCC--ceee--eeeecCCceEEEEEeCCCC----eEEEecCCcEEE
Q 019384           21 GISNLRFSN---HSDHLLVSSW----DKSVRLYDASA--NVLR--GEFMHGGPVLDCCFHDDSS----GFSASADHTVRR   85 (342)
Q Consensus        21 ~V~~l~fs~---~~~~l~s~s~----Dgti~vwd~~~--~~~~--~~~~h~~~V~~~~~~~~~~----~~s~s~D~~i~~   85 (342)
                      .++++.||.   ...+||.||.    .+.|.|-.+..  ++++  ..+.|.-+++.+.|.|+..    -+.|+.+..+|+
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRl  125 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRL  125 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEE
Confidence            567888884   2457888873    47777777643  3333  3457889999999987653    246667778999


Q ss_pred             EEeccCc--ee---ec-----ccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCC-CCcceeeeeecCCCCcEEEEe
Q 019384           86 LVFSHGK--ED---IL-----GKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGA-SGQERTLVGTYPQPERVYSLS  153 (342)
Q Consensus        86 w~~~~~~--~~---~~-----~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~-~~~~~~~~~~~~~~~~v~~~s  153 (342)
                      |.+...+  ..   .+     ..+..++++.+|+. +-++|.++|.|-|+.|||++++ .....+.+-  .|-..|..+.
T Consensus       126 Wri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI--AHDKEV~DIa  203 (364)
T KOG0290|consen  126 WRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI--AHDKEVYDIA  203 (364)
T ss_pred             EeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE--ecCcceeEEE
Confidence            9887432  11   12     34567899999986 4578999999999999999875 211122222  2445677777


Q ss_pred             ccC---CeEEEEEcCCeEEEEeCCCCCCccccccccc-ceeeEEEEEeeCCceE-EEEccCCeEEEEEeechhhhhcccc
Q 019384          154 LVG---NRLVVATAGRHVNVYDLRNMSQPEQRRESSL-KYQTRCVRCYPNGTGY-ALSSVEGRVAMEFFDLSEASQAKKY  228 (342)
Q Consensus       154 ~~~---~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~s~~~~~~i~~~d~~~~~~~~~~  228 (342)
                      +..   +.|+++++||.+|+||+|..+......+.+- ......+++.++...+ ++-..+ ...+.+.|++.... ..-
T Consensus       204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d-S~~V~iLDiR~P~t-pva  281 (364)
T KOG0290|consen  204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD-SNKVVILDIRVPCT-PVA  281 (364)
T ss_pred             eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC-CceEEEEEecCCCc-cee
Confidence            743   5799999999999999998755433333322 2334556666655433 333333 23456688864322 223


Q ss_pred             eeeeEEecCCCCceeeeeeEEEEcCCC-CeEEEecCCCeEEEEeCCCcee------eeccCCCCcceEEEEECC-CCCEE
Q 019384          229 AFKCHRKSEAGRDIVYPVNAIAFHPIY-GTFATGGCDGFVNVWDGNNKKR------LYQYSKYPTSIAALSFSR-DGRLL  300 (342)
Q Consensus       229 ~~~~h~~~~~~~~~~~~v~~v~~sp~~-~~l~sgs~Dg~I~iWd~~~~~~------~~~~~~~~~~V~~v~~sp-dg~~l  300 (342)
                      .++.|+.         .|+.++|.|.. ..|+||+.|..+-|||+...-.      +-.++ ..++|+.+.|+| .+.+|
T Consensus       282 ~L~~H~a---------~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwi  351 (364)
T KOG0290|consen  282 RLRNHQA---------SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWI  351 (364)
T ss_pred             hhhcCcc---------cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEE
Confidence            4556654         69999999985 4799999999999999874221      11222 457899999985 56699


Q ss_pred             EEEEecc
Q 019384          301 AVASSYT  307 (342)
Q Consensus       301 as~s~~~  307 (342)
                      +.++..-
T Consensus       352 ai~~~kk  358 (364)
T KOG0290|consen  352 AICFGKK  358 (364)
T ss_pred             EEEecCe
Confidence            8887544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.73  E-value=2.8e-16  Score=135.60  Aligned_cols=206  Identities=17%  Similarity=0.174  Sum_probs=141.0

Q ss_pred             cCCCCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCCce--------eeeeeecCCceEEEEEeC--CCCeEEEecCC
Q 019384           13 ELGNPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASANV--------LRGEFMHGGPVLDCCFHD--DSSGFSASADH   81 (342)
Q Consensus        13 ~~~~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~~--------~~~~~~h~~~V~~~~~~~--~~~~~s~s~D~   81 (342)
                      .+--+|.+.|..++|.|. .+.|||||.|.+|+||++..+.        ...+.+|+..|--++|+|  ..-+++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            344689999999999995 5678999999999999985432        344568999999999985  44568999999


Q ss_pred             cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCC--CcEEEEeccCCeE
Q 019384           82 TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQP--ERVYSLSLVGNRL  159 (342)
Q Consensus        82 ~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~--~~v~~~s~~~~~~  159 (342)
                      +|.+|++.++....-..|.+.|+++.|+.+|.+|+|.+.|+.|||||.++++... .. ..+.+.  .+++ +--+++.+
T Consensus       155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~-e~-~~heG~k~~Rai-fl~~g~i~  231 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS-EG-VAHEGAKPARAI-FLASGKIF  231 (472)
T ss_pred             eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee-ec-ccccCCCcceeE-EeccCcee
Confidence            9999999999855444599999999999999999999999999999998754321 11 122222  2222 22345533


Q ss_pred             EEEE---cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhh
Q 019384          160 VVAT---AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEA  222 (342)
Q Consensus       160 ~~~s---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~  222 (342)
                      .++.   .++.+-+||-.+.+.+....+.....-+..-.+.++...+.+++. |+..|++|.+...
T Consensus       232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GK-GD~~IRYyEit~d  296 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGK-GDSSIRYFEITNE  296 (472)
T ss_pred             eeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEec-CCcceEEEEecCC
Confidence            3332   235688999887655533222222111222234566666655543 3335677877543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.73  E-value=1.8e-14  Score=132.12  Aligned_cols=273  Identities=24%  Similarity=0.325  Sum_probs=186.5

Q ss_pred             CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce--eeeeeecC-CceEEEEE-eCCCC-eE-EEec-CCcEEEE
Q 019384           14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV--LRGEFMHG-GPVLDCCF-HDDSS-GF-SASA-DHTVRRL   86 (342)
Q Consensus        14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~--~~~~~~h~-~~V~~~~~-~~~~~-~~-s~s~-D~~i~~w   86 (342)
                      ....|...|..+.|.+.+..++.++.|+.+.+|+...+.  ......+. ..+..+.+ .++.. .+ ..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            456889999999999999999999999999999998764  33333323 26666666 55444 33 3344 8899999


Q ss_pred             Eecc--CceeecccCCcceeEEEEeCCCCEEEEeeC-CCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCC-eEE
Q 019384           87 VFSH--GKEDILGKHDAPVRCIEYSYAAGQVITGSW-DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGN-RLV  160 (342)
Q Consensus        87 ~~~~--~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~-D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~-~~~  160 (342)
                      +...  .....+..|...|..++|+|++..+++++. |+.+++|+......  ...+..  +...+..+.+  .+. .++
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~~  215 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP--LSTLAG--HTDPVSSLAFSPDGGLLIA  215 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce--EEeecc--CCCceEEEEEcCCcceEEE
Confidence            9987  445677899999999999999988888885 99999999875221  122222  2333444444  343 344


Q ss_pred             EEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCC
Q 019384          161 VATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGR  240 (342)
Q Consensus       161 ~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~  240 (342)
                      +++.|+.+++||.............+. ... ...+++++..+++++.++.+.  +|+...... ....+..|       
T Consensus       216 ~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~-~~~~~~~~-------  283 (466)
T COG2319         216 SGSSDGTIRLWDLSTGKLLRSTLSGHS-DSV-VSSFSPDGSLLASGSSDGTIR--LWDLRSSSS-LLRTLSGH-------  283 (466)
T ss_pred             EecCCCcEEEEECCCCcEEeeecCCCC-cce-eEeECCCCCEEEEecCCCcEE--EeeecCCCc-EEEEEecC-------
Confidence            448899999998874422211111111 111 116788887777788888764  588754332 11111222       


Q ss_pred             ceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC--CCCcceEEEEECCCCCEEEEEE
Q 019384          241 DIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS--KYPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       241 ~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~--~~~~~V~~v~~spdg~~las~s  304 (342)
                        ...|.++.|+|++..+++++.|+.+++||..+........  .|...+..+.|++++..++.+.
T Consensus       284 --~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (466)
T COG2319         284 --SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG  347 (466)
T ss_pred             --CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEee
Confidence              2368899999988888889999999999988776555444  7777899999954435666663

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=4.2e-15  Score=129.53  Aligned_cols=199  Identities=19%  Similarity=0.160  Sum_probs=127.3

Q ss_pred             eEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCccccc
Q 019384          104 RCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRR  183 (342)
Q Consensus       104 ~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~  183 (342)
                      .+++|+.+|..+++|+.||++|+|+..+....  .....+.....-..|++++..+++.+.| ..++|+..++.......
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~--l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI--LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhh--hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            67999999999999999999999994322111  0111222334445667777889999999 89999999874322222


Q ss_pred             ccccceeeEEEEEeeCC---ceEEEEc--cCCeEE---EEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC
Q 019384          184 ESSLKYQTRCVRCYPNG---TGYALSS--VEGRVA---MEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY  255 (342)
Q Consensus       184 ~~~~~~~~~~v~~~~~~---~~~~~~s--~~~~~~---i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~  255 (342)
                      ....+.....+.|.-++   ...+.+.  ..+.+.   +.+|+-. ........+..          ...|++++.+++|
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~~~----------~~siSsl~VS~dG  293 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKIKR----------FKSISSLAVSDDG  293 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhhhc----------cCcceeEEEcCCC
Confidence            11222233344454443   2122222  222222   1223321 00011111111          1258999999999


Q ss_pred             CeEEEecCCCeEEEEeCCCceeeecc-CCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          256 GTFATGGCDGFVNVWDGNNKKRLYQY-SKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       256 ~~l~sgs~Dg~I~iWd~~~~~~~~~~-~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      +++|.|+.||.|-|++..+.++++.. +.|...|+.+.|+||.+++++.|++.           .+.|.+++.
T Consensus       294 kf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~-----------~~~v~~l~v  355 (398)
T KOG0771|consen  294 KFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN-----------EAAVTKLAV  355 (398)
T ss_pred             cEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC-----------ceeEEEEee
Confidence            99999999999999999988877654 46889999999999999999977654           366666654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=3.2e-16  Score=138.61  Aligned_cols=279  Identities=19%  Similarity=0.202  Sum_probs=198.6

Q ss_pred             CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce--eeeeeecCCceEEEEEe---CCCCeEEEecCCcEEEEEec
Q 019384           15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV--LRGEFMHGGPVLDCCFH---DDSSGFSASADHTVRRLVFS   89 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~--~~~~~~h~~~V~~~~~~---~~~~~~s~s~D~~i~~w~~~   89 (342)
                      .++|.+.|..|.|+..|+.|+|||.|..|.+||...++  +.-..+|...|....|.   .+..+++++.||-+++=.+.
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~  217 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL  217 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence            47899999999999999999999999999999997764  34445799999888885   45667899999998876543


Q ss_pred             c-Cc---eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-CC---CcEEEEecc---CC
Q 019384           90 H-GK---EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYP-QP---ERVYSLSLV---GN  157 (342)
Q Consensus        90 ~-~~---~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~---~~v~~~s~~---~~  157 (342)
                      . +.   ...+..|.+.|.-++.-|+. ..|+|++.|+.+.-.|++......  .+.... ..   ....++..+   .+
T Consensus       218 ~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~--~~~cr~~~~~~~v~L~~Ia~~P~nt~  295 (559)
T KOG1334|consen  218 ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE--KFVCREADEKERVGLYTIAVDPRNTN  295 (559)
T ss_pred             cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc--eeeeeccCCccceeeeeEecCCCCcc
Confidence            3 22   23467899999999999976 568999999999999998644322  111211 11   233444444   34


Q ss_pred             eEEEEEcCCeEEEEeCCCCCCc-----ccccc-----cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh---
Q 019384          158 RLVVATAGRHVNVYDLRNMSQP-----EQRRE-----SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ---  224 (342)
Q Consensus       158 ~~~~~s~d~~v~iwd~~~~~~~-----~~~~~-----~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~---  224 (342)
                      .+++++.|.-+++||.+.....     .....     ..-...++|++++.++..+++.-.|..+  ++|.-.-...   
T Consensus       296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I--YLF~~~~~~G~~p  373 (559)
T KOG1334|consen  296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI--YLFNKSMGDGSEP  373 (559)
T ss_pred             ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce--EEeccccccCCCC
Confidence            7899999999999998764321     01111     1223568899988777777666666654  5564321111   


Q ss_pred             --------cccceeeeEEecCCCCceeeeeeEEE-EcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECC
Q 019384          225 --------AKKYAFKCHRKSEAGRDIVYPVNAIA-FHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSR  295 (342)
Q Consensus       225 --------~~~~~~~~h~~~~~~~~~~~~v~~v~-~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~sp  295 (342)
                              ......++|+...       .|-.|- |.|..+++++||.-|.|.||+-.+++.+.-+.+-..-|+||.-.|
T Consensus       374 ~~~s~~~~~~k~vYKGHrN~~-------TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP  446 (559)
T KOG1334|consen  374 DPSSPREQYVKRVYKGHRNSR-------TVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP  446 (559)
T ss_pred             CCCcchhhccchhhccccccc-------ccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence                    0011134555432       244443 578899999999999999999999998888887777899999999


Q ss_pred             CCCEEEEEE
Q 019384          296 DGRLLAVAS  304 (342)
Q Consensus       296 dg~~las~s  304 (342)
                      ---.||+++
T Consensus       447 ~~PvLAsSG  455 (559)
T KOG1334|consen  447 HLPVLASSG  455 (559)
T ss_pred             CCchhhccC
Confidence            888888765

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.71  E-value=1.9e-16  Score=135.96  Aligned_cols=159  Identities=19%  Similarity=0.195  Sum_probs=123.7

Q ss_pred             CCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCCce----eeeeeecCCceEEEEEeC--CCCeEEEecCCcEEEEEe
Q 019384           16 NPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASANV----LRGEFMHGGPVLDCCFHD--DSSGFSASADHTVRRLVF   88 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~~----~~~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i~~w~~   88 (342)
                      +.|...=+.|+|||- ...|+||..-+-|++|...++.    .+.+.+|...|-+++|+|  ++-+++||.|++|++||+
T Consensus       208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi  287 (440)
T KOG0302|consen  208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI  287 (440)
T ss_pred             cccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence            677777799999993 3458888888999999998764    244557999999999985  445679999999999999


Q ss_pred             ccCc---eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCc-ceeeeeecCCCCcEEEEeccC---CeEEE
Q 019384           89 SHGK---EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-ERTLVGTYPQPERVYSLSLVG---NRLVV  161 (342)
Q Consensus        89 ~~~~---~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~-~~~~~~~~~~~~~v~~~s~~~---~~~~~  161 (342)
                      +.+.   ......|..-|+-|.|+.+-.+|++|+.||+++|||+|.-... +...+..|.  ..|.++.+.+   ..|++
T Consensus       288 Rs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk--~pItsieW~p~e~s~iaa  365 (440)
T KOG0302|consen  288 RSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK--APITSIEWHPHEDSVIAA  365 (440)
T ss_pred             cCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc--CCeeEEEeccccCceEEe
Confidence            8874   2344789999999999988789999999999999999864322 222233333  4455666653   47888


Q ss_pred             EEcCCeEEEEeCCCC
Q 019384          162 ATAGRHVNVYDLRNM  176 (342)
Q Consensus       162 ~s~d~~v~iwd~~~~  176 (342)
                      ++.|..|.|||+...
T Consensus       366 sg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  366 SGEDNQITIWDLSVE  380 (440)
T ss_pred             ccCCCcEEEEEeecc
Confidence            899999999999754

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=2.8e-14  Score=134.50  Aligned_cols=284  Identities=20%  Similarity=0.194  Sum_probs=187.9

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC--c-e--eeeeeecCCceEEEEEeC-CCCeEEEecCCcEEEEEecc
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA--N-V--LRGEFMHGGPVLDCCFHD-DSSGFSASADHTVRRLVFSH   90 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~--~-~--~~~~~~h~~~V~~~~~~~-~~~~~s~s~D~~i~~w~~~~   90 (342)
                      .|.--+++.++||.++++|+|..||.|.+|.--.  . .  ....-=|...|.++.|+. +..+++|+..+.+-+|.+++
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            4555589999999999999999999999998643  1 1  222223889999999985 55678999999999999999


Q ss_pred             CceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeee--e--------cCCCCcEEEEeccCCeEE
Q 019384           91 GKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVG--T--------YPQPERVYSLSLVGNRLV  160 (342)
Q Consensus        91 ~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~--~--------~~~~~~v~~~s~~~~~~~  160 (342)
                      ++...+..-..+|..+.++||++..+....|..|-+-...+-... ..+.+  .        ...-.+.+++++..+.++
T Consensus       283 ~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k-~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v  361 (792)
T KOG1963|consen  283 GKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK-STISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV  361 (792)
T ss_pred             CCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh-hhccCccCCCccccccccccceeEEEcCCCCcee
Confidence            987777777889999999999999888889999888754211100 00000  0        011122344555456788


Q ss_pred             EEEcCCeEEEEeCCCCCCcccccc---c------ccceeeEEEEEeeCCceEEEEc--------cCCeEEEEEeechhhh
Q 019384          161 VATAGRHVNVYDLRNMSQPEQRRE---S------SLKYQTRCVRCYPNGTGYALSS--------VEGRVAMEFFDLSEAS  223 (342)
Q Consensus       161 ~~s~d~~v~iwd~~~~~~~~~~~~---~------~~~~~~~~v~~~~~~~~~~~~s--------~~~~~~i~~~d~~~~~  223 (342)
                      ..+..+.|.+||+-+.+.......   .      .+...++.++.+..|...++..        .++.+.+++|..... 
T Consensus       362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~-  440 (792)
T KOG1963|consen  362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN-  440 (792)
T ss_pred             ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC-
Confidence            888899999999977544311110   0      1111234455555566665543        356778889987543 


Q ss_pred             hcccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCC------c----eeeeccCCCCcceEEEE
Q 019384          224 QAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNN------K----KRLYQYSKYPTSIAALS  292 (342)
Q Consensus       224 ~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~------~----~~~~~~~~~~~~V~~v~  292 (342)
                       .+.|.+...-...++..   -+..+.++|... +.++++.||.++||-..+      .    .+...-.-|..++.+++
T Consensus       441 -~kt~~L~T~I~~PH~~~---~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~  516 (792)
T KOG1963|consen  441 -SKTFILNTKINNPHGNA---FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALC  516 (792)
T ss_pred             -cceeEEEEEEecCCCce---eEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchh
Confidence             33344443222211111   233344455444 899999999999997632      1    22222223788999999


Q ss_pred             ECCCCCEEEEEEec
Q 019384          293 FSRDGRLLAVASSY  306 (342)
Q Consensus       293 ~spdg~~las~s~~  306 (342)
                      ||.||..|+.+..+
T Consensus       517 fs~dGslla~s~~~  530 (792)
T KOG1963|consen  517 FSQDGSLLAVSFDD  530 (792)
T ss_pred             hcCCCcEEEEecCC
Confidence            99999999877763

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=2.6e-15  Score=126.35  Aligned_cols=244  Identities=20%  Similarity=0.245  Sum_probs=162.6

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC--eEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS--GFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~--~~s~s~D~~i~~w~~~~~~~   93 (342)
                      ..|-..|.+|+||+||+.|+|+|.|..|++||+..+.+...+....+|+.+.|+|.+.  .+.+=.+..-.+-++..+..
T Consensus        62 saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h  141 (405)
T KOG1273|consen   62 SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH  141 (405)
T ss_pred             hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCce
Confidence            4678899999999999999999999999999999888888888899999999986443  33444444445555554443


Q ss_pred             eecccCC----cc-eeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-CCCcEEEEeccCCeEEEEEcCCe
Q 019384           94 DILGKHD----AP-VRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP-QPERVYSLSLVGNRLVVATAGRH  167 (342)
Q Consensus        94 ~~~~~h~----~~-V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~v~~~s~~~~~~~~~s~d~~  167 (342)
                      ..+....    +. -.+..|.+.|++|++|..-|.+-++|.++....  ..+.... ...+..-++..++.+++.++|+.
T Consensus       142 ~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~v--as~rits~~~IK~I~~s~~g~~liiNtsDRv  219 (405)
T KOG1273|consen  142 SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECV--ASFRITSVQAIKQIIVSRKGRFLIINTSDRV  219 (405)
T ss_pred             eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheee--eeeeechheeeeEEEEeccCcEEEEecCCce
Confidence            3332211    11 123357889999999999999999998764321  1111111 12233457778899999999999


Q ss_pred             EEEEeCCCCCCc----cccccccc-----ceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384          168 VNVYDLRNMSQP----EQRRESSL-----KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA  238 (342)
Q Consensus       168 v~iwd~~~~~~~----~~~~~~~~-----~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~  238 (342)
                      ||.|+++.....    .....+.+     +.+=+++.|+.+|.+++.++. ..-.+++|....+...+.  +.+-+.   
T Consensus       220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~-~aHaLYIWE~~~GsLVKI--LhG~kg---  293 (405)
T KOG1273|consen  220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA-RAHALYIWEKSIGSLVKI--LHGTKG---  293 (405)
T ss_pred             EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccc-cceeEEEEecCCcceeee--ecCCch---
Confidence            999998742211    00000111     112346677888888777764 444678998765544333  222111   


Q ss_pred             CCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          239 GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       239 ~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                           .....|.|+|-...+++- ..|.|+||...
T Consensus       294 -----E~l~DV~whp~rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  294 -----EELLDVNWHPVRPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             -----hheeecccccceeeeeec-cCCceEEEEee
Confidence                 124567899988888887 77899999754

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=2.2e-15  Score=144.16  Aligned_cols=260  Identities=19%  Similarity=0.202  Sum_probs=170.9

Q ss_pred             CCCCCccCCCCCCCCeEEEEEcCC--CCeEEEEeCCCcEEEEECCC-----ceeeeee----ec----CCceEEEEEe-C
Q 019384            7 PPTSGRELGNPPSDGISNLRFSNH--SDHLLVSSWDKSVRLYDASA-----NVLRGEF----MH----GGPVLDCCFH-D   70 (342)
Q Consensus         7 ~~~~~~~~~~~~~~~V~~l~fs~~--~~~l~s~s~Dgti~vwd~~~-----~~~~~~~----~h----~~~V~~~~~~-~   70 (342)
                      --.+++.+++++...|+.+.+-.+  ..+|++|+.||+||||+-..     .++.+-.    ++    .+.-.-+.|. .
T Consensus      1097 ~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~ 1176 (1387)
T KOG1517|consen 1097 RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQ 1176 (1387)
T ss_pred             ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhh
Confidence            346788888999999999999874  45789999999999999532     2232211    11    1111223454 4


Q ss_pred             CCCeEEEecCCcEEEEEeccCce--eecccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCCCCccee-eeeecCCC
Q 019384           71 DSSGFSASADHTVRRLVFSHGKE--DILGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERT-LVGTYPQP  146 (342)
Q Consensus        71 ~~~~~s~s~D~~i~~w~~~~~~~--~~~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~~-~~~~~~~~  146 (342)
                      .+.++++|.-..|++||......  .+-.+....|+++.-+. .|+.|+.|..||.||+||.|........ ....+...
T Consensus      1177 ~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1177 SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred             CCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc
Confidence            56677777778899999876552  22334555677765443 4688999999999999999865432111 22333333


Q ss_pred             CcEEEEeccC--C-eEEEEEcCCeEEEEeCCCCCCccccccc--cc--ceeeEEEEEeeCCceEEEEccCCeEEEEEeec
Q 019384          147 ERVYSLSLVG--N-RLVVATAGRHVNVYDLRNMSQPEQRRES--SL--KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDL  219 (342)
Q Consensus       147 ~~v~~~s~~~--~-~~~~~s~d~~v~iwd~~~~~~~~~~~~~--~~--~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~  219 (342)
                      ..|+.+++..  - .+++++.+|.|++||+|..... .....  +-  ....+++.+|+....+++|+. +.  |++|++
T Consensus      1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e-~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~--ikIy~~ 1332 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE-TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL--IKIYSL 1332 (1387)
T ss_pred             ccceeEEeecCCCcceeeeccCCeEEEEecccCccc-ccceeeeccccCccceeeeeccCCCeeeecCc-ce--EEEEec
Confidence            3477777643  2 5999999999999999984211 11111  11  113678889999999999887 44  466888


Q ss_pred             hhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCc
Q 019384          220 SEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNK  275 (342)
Q Consensus       220 ~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~  275 (342)
                      ......   .++.+... .+ ...+.+.|++|||..-+||.|+.|.+|.||...+.
T Consensus      1333 ~G~~l~---~~k~n~~F-~~-q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1333 SGEQLN---IIKYNPGF-MG-QRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             Chhhhc---ccccCccc-cc-CcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            644221   11111111 00 11235789999999989999999999999987654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.70  E-value=6.7e-14  Score=126.43  Aligned_cols=276  Identities=9%  Similarity=0.052  Sum_probs=161.3

Q ss_pred             EEEEeCCCcEEEEECCC-ce--eeeeeecCCceEEEEEeCCCCe-EEE-ecCCcEEEEEecc-Cceeecc--cCCcceeE
Q 019384           34 LLVSSWDKSVRLYDASA-NV--LRGEFMHGGPVLDCCFHDDSSG-FSA-SADHTVRRLVFSH-GKEDILG--KHDAPVRC  105 (342)
Q Consensus        34 l~s~s~Dgti~vwd~~~-~~--~~~~~~h~~~V~~~~~~~~~~~-~s~-s~D~~i~~w~~~~-~~~~~~~--~h~~~V~~  105 (342)
                      .++...|+.|++||+.+ ++  +.....+.+....+.++++++. +.+ ..++.|..|+++. +......  ........
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~   84 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH   84 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence            44557899999999963 33  3344445567778899987765 444 3577888898863 2222111  12234678


Q ss_pred             EEEeCCCCEEEEeeC-CCcEEEEcCCCCCCcceeeeeecCC--CCcEEEEeccCCeEEEE-EcCCeEEEEeCCCCCCccc
Q 019384          106 IEYSYAAGQVITGSW-DKSLKCWDPRGASGQERTLVGTYPQ--PERVYSLSLVGNRLVVA-TAGRHVNVYDLRNMSQPEQ  181 (342)
Q Consensus       106 ~~~~~~~~~l~sgs~-D~~I~iWd~~~~~~~~~~~~~~~~~--~~~v~~~s~~~~~~~~~-s~d~~v~iwd~~~~~~~~~  181 (342)
                      ++|+|+++.|++++. ++.|.+||++..... .........  ......++.+++.++++ ..++.|.+||+.+......
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~-~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIP-VAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCC-CCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            999999998877654 789999998632211 011111111  11223466666676554 4558999999976322110


Q ss_pred             ----ccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcc--cceeeeEEecCCCCceeeeeeEEEEcCC
Q 019384          182 ----RRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAK--KYAFKCHRKSEAGRDIVYPVNAIAFHPI  254 (342)
Q Consensus       182 ----~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~--~~~~~~h~~~~~~~~~~~~v~~v~~sp~  254 (342)
                          ............+.++|+++.+++... ++++  .+|++.......  ...+..+....   ........+.|+|+
T Consensus       164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v--~v~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~i~~~pd  238 (330)
T PRK11028        164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSV--DVWQLKDPHGEIECVQTLDMMPADF---SDTRWAADIHITPD  238 (330)
T ss_pred             cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEE--EEEEEeCCCCCEEEEEEEecCCCcC---CCCccceeEEECCC
Confidence                001111223457889999998877765 5554  557764221111  11111111100   00011235889999


Q ss_pred             CCeEEEec-CCCeEEEEeCCCce----eeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384          255 YGTFATGG-CDGFVNVWDGNNKK----RLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       255 ~~~l~sgs-~Dg~I~iWd~~~~~----~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                      +++|+++. .+++|.+|+++...    .+..... ......++|+|||++|+++....          +.|.+|+++
T Consensus       239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~----------~~v~v~~~~  304 (330)
T PRK11028        239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKS----------HHISVYEID  304 (330)
T ss_pred             CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccC----------CcEEEEEEc
Confidence            99888774 57899999985432    2222211 12456899999999999876422          147777664

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.5e-15  Score=128.92  Aligned_cols=252  Identities=18%  Similarity=0.247  Sum_probs=152.3

Q ss_pred             CCccCC--CCCCCCeEEEEEcC--CCCeEEEEeCCCcEEEEECCCce---eeeeeecCC-ceEEEEEeCCCCeEEEec--
Q 019384           10 SGRELG--NPPSDGISNLRFSN--HSDHLLVSSWDKSVRLYDASANV---LRGEFMHGG-PVLDCCFHDDSSGFSASA--   79 (342)
Q Consensus        10 ~~~~~~--~~~~~~V~~l~fs~--~~~~l~s~s~Dgti~vwd~~~~~---~~~~~~h~~-~V~~~~~~~~~~~~s~s~--   79 (342)
                      +|.-|.  ..++..++.++|..  ....+.||+.||+||+||+....   .+..-++.+ +-.+++-.-...++.++.  
T Consensus        59 tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~  138 (376)
T KOG1188|consen   59 TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTEL  138 (376)
T ss_pred             chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccc
Confidence            344444  46677788889988  45778899999999999997643   222223442 333444433455555553  


Q ss_pred             ---CCcEEEEEeccCce---eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE
Q 019384           80 ---DHTVRRLVFSHGKE---DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL  152 (342)
Q Consensus        80 ---D~~i~~w~~~~~~~---~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~  152 (342)
                         |-.+.+||++....   .....|.+-|+++.|+|.. ++|+|||.||-|.++|+... .+.-..+....+...|-.+
T Consensus       139 ~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d-~EeDaL~~viN~~sSI~~i  217 (376)
T KOG1188|consen  139 TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD-NEEDALLHVINHGSSIHLI  217 (376)
T ss_pred             ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC-cchhhHHHhhcccceeeee
Confidence               34588999987654   2457899999999999965 78999999999999998643 2221222222333334444


Q ss_pred             eccC---CeEEEEEcCCeEEEEeCCCCCCcccccccc------------cceeeEEEEEeeC-CceEEEEcc-CCeEEEE
Q 019384          153 SLVG---NRLVVATAGRHVNVYDLRNMSQPEQRRESS------------LKYQTRCVRCYPN-GTGYALSSV-EGRVAME  215 (342)
Q Consensus       153 s~~~---~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~------------~~~~~~~v~~~~~-~~~~~~~s~-~~~~~i~  215 (342)
                      -+.+   +.|.+-+-.++..+|++..++. ......+            ..+.+.+  .+|. ....+++.. -++..+.
T Consensus       218 gw~~~~ykrI~clTH~Etf~~~ele~~~~-~~~~~~~~~~~~d~r~~~~~dY~I~~--~~~~~~~~~~l~g~~~n~~~~~  294 (376)
T KOG1188|consen  218 GWLSKKYKRIMCLTHMETFAIYELEDGSE-ETWLENPDVSADDLRKEDNCDYVINE--HSPGDKDTCALAGTDSNKGTIF  294 (376)
T ss_pred             eeecCCcceEEEEEccCceeEEEccCCCh-hhcccCccchhhhHHhhhhhhheeec--ccCCCcceEEEeccccCceeEE
Confidence            4443   3677888889999999987652 2211111            1111221  1233 333444433 4444443


Q ss_pred             Eeec-hhhh-hcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          216 FFDL-SEAS-QAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       216 ~~d~-~~~~-~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      .+.. .... ......+.++        +...|+++.|...+.++.||++||.+.+|..+
T Consensus       295 ~~~~~~s~~~~~~~a~l~g~--------~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  295 PLVDTSSGSLLTEPAILQGG--------HEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             EeeecccccccCccccccCC--------cHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence            3331 1111 1111222221        11247888888889999999999999999853

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.69  E-value=5.7e-15  Score=122.90  Aligned_cols=177  Identities=17%  Similarity=0.177  Sum_probs=118.4

Q ss_pred             CCCCeEEEEEcCCC-CeEEEEeCC-------CcEEEEECCCcee---------eeee--ecCCceEEEEEeCCCCeEEEe
Q 019384           18 PSDGISNLRFSNHS-DHLLVSSWD-------KSVRLYDASANVL---------RGEF--MHGGPVLDCCFHDDSSGFSAS   78 (342)
Q Consensus        18 ~~~~V~~l~fs~~~-~~l~s~s~D-------gti~vwd~~~~~~---------~~~~--~h~~~V~~~~~~~~~~~~s~s   78 (342)
                      |.+.|+.|+-+|-. +.|+|+-.|       -.+.||.+....-         ...+  .+-+.|.|+.|.|++..+.+-
T Consensus        62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm  141 (370)
T KOG1007|consen   62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM  141 (370)
T ss_pred             CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe
Confidence            46789999989854 455554332       3477999854221         1111  245689999999887777777


Q ss_pred             cCCcEEEEEeccCcee---e----cccCCcceeEEEEeC--CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcE
Q 019384           79 ADHTVRRLVFSHGKED---I----LGKHDAPVRCIEYSY--AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERV  149 (342)
Q Consensus        79 ~D~~i~~w~~~~~~~~---~----~~~h~~~V~~~~~~~--~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v  149 (342)
                      .|..|.+|+++.....   +    -.+|+...++-+|+|  +++.+++. .|++++.||+|+..+..  .+ ...+.+.+
T Consensus       142 ~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~--sI-~dAHgq~v  217 (370)
T KOG1007|consen  142 DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNN--SI-EDAHGQRV  217 (370)
T ss_pred             ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhc--ch-hhhhccee
Confidence            8999999999876542   1    124667788999999  66777765 58999999998643321  11 12244567


Q ss_pred             EEEeccCC---eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeC
Q 019384          150 YSLSLVGN---RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN  199 (342)
Q Consensus       150 ~~~s~~~~---~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  199 (342)
                      ..++++++   .+++|+.|+.|+|||.|+.+.+...+. .+...+.+|.|.|.
T Consensus       218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~VRfn~~  269 (370)
T KOG1007|consen  218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRFNPE  269 (370)
T ss_pred             eeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEEEecCc
Confidence            78888876   688999999999999998755543221 22233445555443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=4.3e-16  Score=140.02  Aligned_cols=247  Identities=19%  Similarity=0.234  Sum_probs=155.7

Q ss_pred             eeeecCCceEEEEEeC-CCCeEEEecCCcEEEEEeccCc---------eeecccCCcceeEEEEeCCCCEEEEeeCCCcE
Q 019384           55 GEFMHGGPVLDCCFHD-DSSGFSASADHTVRRLVFSHGK---------EDILGKHDAPVRCIEYSYAAGQVITGSWDKSL  124 (342)
Q Consensus        55 ~~~~h~~~V~~~~~~~-~~~~~s~s~D~~i~~w~~~~~~---------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I  124 (342)
                      +...|.+.|....|.+ ...+++|+.|+++++|.+....         ...+++|.++|.|+++.+.++.++||+.||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            3446888899999974 4567899999999999993221         12578999999999999999999999999999


Q ss_pred             EEEcCCCC----C-Ccceeeeeec-CCCCcE--EEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEE
Q 019384          125 KCWDPRGA----S-GQERTLVGTY-PQPERV--YSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRC  196 (342)
Q Consensus       125 ~iWd~~~~----~-~~~~~~~~~~-~~~~~v--~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~  196 (342)
                      +.|++-..    . .......+.. .++..+  +.++...+.++++++||++++|+...... .......-.....++.+
T Consensus       369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~  447 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR  447 (577)
T ss_pred             eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence            99954310    0 0000111111 233344  34455567899999999999999876532 11111110111223322


Q ss_pred             eeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCce
Q 019384          197 YPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK  276 (342)
Q Consensus       197 ~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~  276 (342)
                      -.......+.+.  .  ..++++..........+...... .+......++-+..+|.+.+.+++.+|+.|+++|..+++
T Consensus       448 ~ss~~a~~~~s~--~--~~~~~~~~~ev~s~~~~~~s~~~-~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  448 TSSRPAHSLASF--R--FGYTSIDDMEVVSDLLIFESSAS-PGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             ccchhHhhhhhc--c--cccccchhhhhhhheeeccccCC-CcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence            221111111111  1  11122111111111111000000 000000136778889999999999999999999999999


Q ss_pred             eeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          277 RLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       277 ~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      .+.....|...+.++++-|.|-+|++++.+.
T Consensus       523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~  553 (577)
T KOG0642|consen  523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDG  553 (577)
T ss_pred             cchheeeccceecceeecCCCceEEeecCCc
Confidence            9999999999999999999999999998766

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=2.5e-16  Score=151.91  Aligned_cols=241  Identities=17%  Similarity=0.226  Sum_probs=169.3

Q ss_pred             CCCeEEEEEcCCCCe----EEEEeCCCcEEEEECCC----ce---eeeeeecCCceEEEEEeCCC--CeEEEecCCcEEE
Q 019384           19 SDGISNLRFSNHSDH----LLVSSWDKSVRLYDASA----NV---LRGEFMHGGPVLDCCFHDDS--SGFSASADHTVRR   85 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~----l~s~s~Dgti~vwd~~~----~~---~~~~~~h~~~V~~~~~~~~~--~~~s~s~D~~i~~   85 (342)
                      ....+.|+|.+.+..    ||.|..||.|.+||...    .+   +.+...|.|.|.++.|.+..  .+++|+.||.|.+
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            457889999998766    88899999999999754    11   34445799999999998543  4678999999999


Q ss_pred             EEeccCceee-cc--cCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC---e
Q 019384           86 LVFSHGKEDI-LG--KHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN---R  158 (342)
Q Consensus        86 w~~~~~~~~~-~~--~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~---~  158 (342)
                      ||+.+.+... ..  .-.+.|.+++|+..- ..|++++.++++-|||++.....  ..+.....-..+-.+.++++   .
T Consensus       144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi--i~ls~~~~~~~~S~l~WhP~~aTq  221 (1049)
T KOG0307|consen  144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI--IKLSDTPGRMHCSVLAWHPDHATQ  221 (1049)
T ss_pred             eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc--cccccCCCccceeeeeeCCCCcee
Confidence            9998855332 21  234679999999754 46789999999999999854221  11211111122345666654   6


Q ss_pred             EEEEEcCC---eEEEEeCCCCCCcccccccccceeeEEEEEeeCC-ceEEEEccCCeEEEEEeechhhhhcccceeeeEE
Q 019384          159 LVVATAGR---HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG-TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR  234 (342)
Q Consensus       159 ~~~~s~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~  234 (342)
                      +++++.|.   .|.+||+|....+.+... .+..-+.++.|.+.+ ..++++..|+++.  +|+..+......+  ... 
T Consensus       222 l~~As~dd~~PviqlWDlR~assP~k~~~-~H~~GilslsWc~~D~~lllSsgkD~~ii--~wN~~tgEvl~~~--p~~-  295 (1049)
T KOG0307|consen  222 LLVASGDDSAPVIQLWDLRFASSPLKILE-GHQRGILSLSWCPQDPRLLLSSGKDNRII--CWNPNTGEVLGEL--PAQ-  295 (1049)
T ss_pred             eeeecCCCCCceeEeecccccCCchhhhc-ccccceeeeccCCCCchhhhcccCCCCee--EecCCCceEeeec--CCC-
Confidence            88888886   499999998766655443 233347788888877 5667777888764  5888654332221  110 


Q ss_pred             ecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCCc
Q 019384          235 KSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNNK  275 (342)
Q Consensus       235 ~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~~  275 (342)
                              ...+..+.|+|... .++.++.||.|-||.++..
T Consensus       296 --------~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  296 --------GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             --------CcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence                    11467789999876 6788999999999998754

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=5.2e-14  Score=120.87  Aligned_cols=243  Identities=20%  Similarity=0.277  Sum_probs=151.5

Q ss_pred             ceEEEEEeCCCCeEE-EecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCC--cEEEEcCCCCCCccee
Q 019384           62 PVLDCCFHDDSSGFS-ASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDK--SLKCWDPRGASGQERT  138 (342)
Q Consensus        62 ~V~~~~~~~~~~~~s-~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~--~I~iWd~~~~~~~~~~  138 (342)
                      .+....|..+..+++ |+.|| .+++..+.-.. ....-...+.=+..--...+++-.+.+.  .+++.+++....    
T Consensus         7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~----   80 (391)
T KOG2110|consen    7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTT----   80 (391)
T ss_pred             ceeeeeeccceeEEEccCCCc-eeEEecCchHH-hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCce----
Confidence            345555766666665 44444 34554332211 1111112222222222345666555554  488888764322    


Q ss_pred             eeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccc-eeeEEEEEeeCCceEEEEccCCeEEEEEe
Q 019384          139 LVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLK-YQTRCVRCYPNGTGYALSSVEGRVAMEFF  217 (342)
Q Consensus       139 ~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~s~~~~~~i~~~  217 (342)
                       +=...-+..+.++-++.++++++-.+. |.|||+++.+........+.+ .....++.++.+.+++.-+.-..-.+.+|
T Consensus        81 -ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~  158 (391)
T KOG2110|consen   81 -ICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF  158 (391)
T ss_pred             -EEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence             111223456788888889998888775 999999998654433322111 11333444444556655443333345679


Q ss_pred             echhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCe-EEEEeCCCceeeeccCCC--CcceEEEEEC
Q 019384          218 DLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGF-VNVWDGNNKKRLYQYSKY--PTSIAALSFS  294 (342)
Q Consensus       218 d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~-I~iWd~~~~~~~~~~~~~--~~~V~~v~~s  294 (342)
                      |......  ...+.+|..         ++.+++|+|+|.+|||+|+.|+ |||+.+.+++.+.+|..-  ...|.+++|+
T Consensus       159 d~~nl~~--v~~I~aH~~---------~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs  227 (391)
T KOG2110|consen  159 DTINLQP--VNTINAHKG---------PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS  227 (391)
T ss_pred             Eccccee--eeEEEecCC---------ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence            9854322  234567764         6999999999999999999997 899999999999887633  4578999999


Q ss_pred             CCCCEEEEEEeccccCCCCCCCCCcEEEEEccCCccccCCC
Q 019384          295 RDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIEVKPKPK  335 (342)
Q Consensus       295 pdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (342)
                      ||+++|++.|..+           .|=++++++-. .++++
T Consensus       228 ~ds~~L~~sS~Te-----------TVHiFKL~~~~-~~~~~  256 (391)
T KOG2110|consen  228 PDSQFLAASSNTE-----------TVHIFKLEKVS-NNPPE  256 (391)
T ss_pred             CCCCeEEEecCCC-----------eEEEEEecccc-cCCCC
Confidence            9999999888765           68888887644 55555

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=6.9e-16  Score=138.29  Aligned_cols=160  Identities=17%  Similarity=0.206  Sum_probs=122.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee--ecCCceEEEEEeC---CCCeEEEecCCcEEEEEecc
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF--MHGGPVLDCCFHD---DSSGFSASADHTVRRLVFSH   90 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~--~h~~~V~~~~~~~---~~~~~s~s~D~~i~~w~~~~   90 (342)
                      .+|.+-|++|.|+.+|..|+|||.|-.+.|||....+++..+  +|.+.|.++.|.|   +..+++|+.|..|+++|+..
T Consensus        47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence            689999999999999999999999999999999876666554  7999999999964   44567999999999999975


Q ss_pred             Cce-----------eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCccee-----eeeec-C--CCCcEE
Q 019384           91 GKE-----------DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERT-----LVGTY-P--QPERVY  150 (342)
Q Consensus        91 ~~~-----------~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~-----~~~~~-~--~~~~v~  150 (342)
                      .+.           ..+.-|+..|..++..|++ ..|.+++.||+|+-+|++..+.....     .+..+ .  ...+.+
T Consensus       127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~l  206 (758)
T KOG1310|consen  127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCL  206 (758)
T ss_pred             ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeee
Confidence            332           1345699999999999988 78899999999999999854321110     01111 0  112233


Q ss_pred             EEec-cCCeEEEEEcCCeEEEEeCCC
Q 019384          151 SLSL-VGNRLVVATAGRHVNVYDLRN  175 (342)
Q Consensus       151 ~~s~-~~~~~~~~s~d~~v~iwd~~~  175 (342)
                      .+++ .+..+++|+.|--.++||.|.
T Consensus       207 tisp~rp~~laVGgsdpfarLYD~Rr  232 (758)
T KOG1310|consen  207 TISPSRPYYLAVGGSDPFARLYDRRR  232 (758)
T ss_pred             eecCCCCceEEecCCCchhhhhhhhh
Confidence            4454 356889999998999999764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=4.3e-15  Score=142.17  Aligned_cols=272  Identities=19%  Similarity=0.225  Sum_probs=176.4

Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee----cCCceEEEEEe---CCCCeEEEecCCcEEEEEeccC---c
Q 019384           23 SNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM----HGGPVLDCCFH---DDSSGFSASADHTVRRLVFSHG---K   92 (342)
Q Consensus        23 ~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~----h~~~V~~~~~~---~~~~~~s~s~D~~i~~w~~~~~---~   92 (342)
                      ..+.|+|=...++++...-+|+|||...++...-+.    ....|+.+++.   +...+++|+.||.||+|.-...   +
T Consensus      1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~ 1147 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKK 1147 (1387)
T ss_pred             ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCC
Confidence            457888888899988877899999998776544332    23468888885   2335679999999999975332   1


Q ss_pred             eee------cccCC----cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---CCeE
Q 019384           93 EDI------LGKHD----APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---GNRL  159 (342)
Q Consensus        93 ~~~------~~~h~----~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~~~~  159 (342)
                      .++      +.++.    +.=.-++|.+..+.|++++.-..|||||............   .....+.+++.+   ++.+
T Consensus      1148 ~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~---~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1148 PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY---GSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred             ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc---CCCccceeecccccCCceE
Confidence            111      12211    1112357777777888887789999999864322111111   122334555543   6789


Q ss_pred             EEEEcCCeEEEEeCCCCCCc--cccc-ccccceeeEEEEEeeCCce-EEEEccCCeEEEEEeechhhhhcccceeeeEEe
Q 019384          160 VVATAGRHVNVYDLRNMSQP--EQRR-ESSLKYQTRCVRCYPNGTG-YALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK  235 (342)
Q Consensus       160 ~~~s~d~~v~iwd~~~~~~~--~~~~-~~~~~~~~~~v~~~~~~~~-~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~  235 (342)
                      +.|.+||.|++||.|.....  .... .+.-...+..+.+-+.|-. +++++.+|++  ++||++.....-...+..|.+
T Consensus      1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I--~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI--QLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred             EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeE--EEEecccCcccccceeeeccc
Confidence            99999999999999875331  1111 1111112455556665544 8899999986  569998643322334444443


Q ss_pred             cCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCce--eeec---cCC-CCcceEEEEECCCCCEEEEEEec
Q 019384          236 SEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK--RLYQ---YSK-YPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       236 ~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~--~~~~---~~~-~~~~V~~v~~spdg~~las~s~~  306 (342)
                      ..      ..++++..|+....+|+|+. +.|+||++....  .++.   +.+ ..+.+.|++|.|-.-+||+|+.+
T Consensus      1303 yG------s~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1303 YG------SALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred             cC------ccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCC
Confidence            21      13789999999999999999 999999986422  1221   111 23467999999999999988543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.67  E-value=7.4e-13  Score=121.43  Aligned_cols=271  Identities=24%  Similarity=0.332  Sum_probs=184.0

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeC-CCcEEEEECCCceee-eeeecCCceEEEEEeCCCC-eE-EEecCCcEEEEEeccC
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSW-DKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSS-GF-SASADHTVRRLVFSHG   91 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~-Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~-~~-s~s~D~~i~~w~~~~~   91 (342)
                      ..|...|..++|+|++..+++++. |+++++|+...+... ....|...|.++.|.+++. ++ +++.|+.+++|+...+
T Consensus       152 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~  231 (466)
T COG2319         152 EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG  231 (466)
T ss_pred             ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence            678899999999999999988885 999999999875433 4445899999999997765 44 4489999999987755


Q ss_pred             cee--ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc--CCeEEEEEcCCe
Q 019384           92 KED--ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV--GNRLVVATAGRH  167 (342)
Q Consensus        92 ~~~--~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~d~~  167 (342)
                      ...  .+.+|...+ ...|++++..+++++.|+.+++||.+.... .....  ..+...+.++.+.  +..+++++.|+.
T Consensus       232 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~~  307 (466)
T COG2319         232 KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-LLRTL--SGHSSSVLSVAFSPDGKLLASGSSDGT  307 (466)
T ss_pred             cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-EEEEE--ecCCccEEEEEECCCCCEEEEeeCCCc
Confidence            543  477888775 448999888889999999999999875433 11111  2233445555554  467777888888


Q ss_pred             EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384          168 VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV  246 (342)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v  246 (342)
                      +++||+.+...............+..+.+.+++..+..+ ..++.+  .+|+.....  ...   ....       ...+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~--~~~---~~~~-------~~~~  373 (466)
T COG2319         308 VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI--RLWDLRTGK--PLK---TLEG-------HSNV  373 (466)
T ss_pred             EEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcE--EeeecCCCc--eeE---EecC-------CceE
Confidence            999998876433222201111234555562332445555 455443  447765432  111   0000       0126


Q ss_pred             eEEEEcCCCCeEEE-ecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          247 NAIAFHPIYGTFAT-GGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       247 ~~v~~sp~~~~l~s-gs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                      ..+.+++ ...+.. +..++.+.+|+............+...+....+++++.++++++.
T Consensus       374 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (466)
T COG2319         374 LSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS  432 (466)
T ss_pred             EEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecC
Confidence            7788888 544444 789999999999887766555444378999999999999988544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.66  E-value=5e-15  Score=135.59  Aligned_cols=235  Identities=14%  Similarity=0.230  Sum_probs=164.1

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCcee
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKED   94 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~~   94 (342)
                      .+|.+-|++|+|+.||.++|||+.|+.|.||..+-..+ -.+.|.+.|.|+.|.|-.+. ++|+- ...-+|..+++...
T Consensus        50 KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~  127 (1081)
T KOG1538|consen   50 KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVS  127 (1081)
T ss_pred             ccccceEEEEEEccCCceeccCCCceeEEEecccccce-eeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHH
Confidence            68999999999999999999999999999998754322 23569999999999876654 45554 33446765554322


Q ss_pred             ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-CCCcEEEEeccC-------CeEEEEEcCC
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP-QPERVYSLSLVG-------NRLVVATAGR  166 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~v~~~s~~~-------~~~~~~s~d~  166 (342)
                      .. .....|.+|+|+.||++|+-|-.||||.+-+..   +++...+.... ....+.++.+++       +.++++--+.
T Consensus       128 K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~---gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q  203 (1081)
T KOG1538|consen  128 KH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN---GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ  203 (1081)
T ss_pred             hh-hhheeEEEeeecCCCcEEEEeccCceEEeecCC---CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc
Confidence            11 123568899999999999999999999987643   22222233221 123455555432       3677778888


Q ss_pred             eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384          167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV  246 (342)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v  246 (342)
                      ++.++.+......   ....+.+...|++..++|.++++|+.++...+  |.-.   ..+.-.+        + +....|
T Consensus       204 TLSFy~LsG~~Ig---k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~--fTR~---GvrLGTv--------g-~~D~WI  266 (1081)
T KOG1538|consen  204 TLSFYQLSGKQIG---KDRALNFDPCCISYFTNGEYILLGGSDKQLSL--FTRD---GVRLGTV--------G-EQDSWI  266 (1081)
T ss_pred             eeEEEEecceeec---ccccCCCCchhheeccCCcEEEEccCCCceEE--Eeec---CeEEeec--------c-ccceeE
Confidence            8998888643211   12245567889999999999999999887543  4321   1111000        0 112379


Q ss_pred             eEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          247 NAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       247 ~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      .+|+.+|+++.++.|..||+|-.|++.
T Consensus       267 WtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  267 WTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             EEEEEccCCceEEEEEccCeeehhhhH
Confidence            999999999999999999999999864

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.66  E-value=5.6e-15  Score=132.18  Aligned_cols=259  Identities=18%  Similarity=0.169  Sum_probs=163.1

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEe---------CCCCeEEEecCCcEEEE
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFH---------DDSSGFSASADHTVRRL   86 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~---------~~~~~~s~s~D~~i~~w   86 (342)
                      |.|..-|-++.|+.....+.+++.+.-++-||+.+...........-|....+.         ....++.++.||.+.+.
T Consensus        11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             cccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            467777889999988766655544444444455432211101111112111111         12346789999998877


Q ss_pred             EeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC
Q 019384           87 VFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR  166 (342)
Q Consensus        87 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~  166 (342)
                      .-..+-+..+..|.++|.|-.|+|||.-|+|++.||.||+|.. +  +..+..+........+..+.++.+.++.+.+ +
T Consensus        91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-s--GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~  166 (737)
T KOG1524|consen   91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-S--GMLRSTVVQNEESIRCARWAPNSNSIVFCQG-G  166 (737)
T ss_pred             cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-c--chHHHHHhhcCceeEEEEECCCCCceEEecC-C
Confidence            6554446678899999999999999999999999999999973 2  3233333332223333344445555655544 4


Q ss_pred             eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384          167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV  246 (342)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v  246 (342)
                      .+.|=-+.....+.+..  ++.+-+.|+.|++..+.+++++.|-+.  ++||.-.   ...+.         ...+.+||
T Consensus       167 h~~IKpL~~n~k~i~Wk--AHDGiiL~~~W~~~s~lI~sgGED~kf--KvWD~~G---~~Lf~---------S~~~ey~I  230 (737)
T KOG1524|consen  167 HISIKPLAANSKIIRWR--AHDGLVLSLSWSTQSNIIASGGEDFRF--KIWDAQG---ANLFT---------SAAEEYAI  230 (737)
T ss_pred             eEEEeecccccceeEEe--ccCcEEEEeecCccccceeecCCceeE--EeecccC---ccccc---------CChhccce
Confidence            55555554433333322  344567899999999988888877654  6699632   12222         22345689


Q ss_pred             eEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          247 NAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       247 ~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      ++++|.|+ +.++.+|.. ++|+           -+...+.|..++|||||..++.|++.+
T Consensus       231 TSva~npd-~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  231 TSVAFNPE-KDYLLWSYN-TARF-----------SSPRVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             eeeeeccc-cceeeeeee-eeee-----------cCCCccceEEEEEcCCCceeeccccCc
Confidence            99999999 667776643 4441           123457899999999999999988743

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.1e-14  Score=136.04  Aligned_cols=235  Identities=11%  Similarity=0.040  Sum_probs=151.8

Q ss_pred             CCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEecC---CcEEEEEeccCceeecccCCcceeEEEEeCCCCE
Q 019384           39 WDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASAD---HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ  114 (342)
Q Consensus        39 ~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D---~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~  114 (342)
                      .+..|.|||......+....|...+.+..|+|+++. +.++.+   ..|.+|++.+++...+........+++|+||++.
T Consensus       182 ~~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        182 QPYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR  261 (429)
T ss_pred             ceEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence            357999999987665555567888999999988765 455543   3589999987764433322233446899999998


Q ss_pred             EEEe-eCCCcEEEE--cCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEE-cCCeEEEEeCCCCCCccccccccccee
Q 019384          115 VITG-SWDKSLKCW--DPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVAT-AGRHVNVYDLRNMSQPEQRRESSLKYQ  190 (342)
Q Consensus       115 l~sg-s~D~~I~iW--d~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s-~d~~v~iwd~~~~~~~~~~~~~~~~~~  190 (342)
                      |+.+ +.|+.+.||  |+.++.  . ..+...........++++++.++.++ .++..++|++...........  ... 
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~--~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~--~~~-  335 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGT--P-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG--GRG-  335 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCC--e-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec--CCC-
Confidence            8765 468877666  554322  1 12222222233456777777777655 457788887654222111111  111 


Q ss_pred             eEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEE
Q 019384          191 TRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVW  270 (342)
Q Consensus       191 ~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iW  270 (342)
                       .+..++|+++.++..+.++   +..||..+.....   +..+.          ....++|+|+|++|+.++.++.+.+|
T Consensus       336 -~~~~~SpDG~~ia~~~~~~---i~~~Dl~~g~~~~---lt~~~----------~~~~~~~sPdG~~i~~~s~~g~~~~l  398 (429)
T PRK01742        336 -YSAQISADGKTLVMINGDN---VVKQDLTSGSTEV---LSSTF----------LDESPSISPNGIMIIYSSTQGLGKVL  398 (429)
T ss_pred             -CCccCCCCCCEEEEEcCCC---EEEEECCCCCeEE---ecCCC----------CCCCceECCCCCEEEEEEcCCCceEE
Confidence             3456899999988776643   3457875432111   11000          12356899999999999999998888


Q ss_pred             eCC--CceeeeccCCCCcceEEEEECCC
Q 019384          271 DGN--NKKRLYQYSKYPTSIAALSFSRD  296 (342)
Q Consensus       271 d~~--~~~~~~~~~~~~~~V~~v~~spd  296 (342)
                      .+.  +++.++.+..|.+.+...+|||-
T Consensus       399 ~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        399 QLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EEEECCCCceEEccCCCCCCCCcccCCC
Confidence            753  56778888888888999999984

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.64  E-value=1.3e-13  Score=129.13  Aligned_cols=272  Identities=17%  Similarity=0.149  Sum_probs=176.1

Q ss_pred             CCcEEEEECCCc-eeeeeeecCCceEEEEEeC--CCCeEEEecCCcEEEEEeccCcee-------ecccCCcceeEEEEe
Q 019384           40 DKSVRLYDASAN-VLRGEFMHGGPVLDCCFHD--DSSGFSASADHTVRRLVFSHGKED-------ILGKHDAPVRCIEYS  109 (342)
Q Consensus        40 Dgti~vwd~~~~-~~~~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i~~w~~~~~~~~-------~~~~h~~~V~~~~~~  109 (342)
                      ++.+.||++... .....+.-...|.+++|++  ...++.|+.+|.|.+||+......       ....|..++..+.|.
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            357999999775 3334445678899999984  345568889999999999876642       234688999999998


Q ss_pred             CCCC--EEEEeeCCCcEEEEcCCCCCCcc-eeeeeec-------CCCCcEEEEec---cCCeEEEEEcCCeEEEEeCCCC
Q 019384          110 YAAG--QVITGSWDKSLKCWDPRGASGQE-RTLVGTY-------PQPERVYSLSL---VGNRLVVATAGRHVNVYDLRNM  176 (342)
Q Consensus       110 ~~~~--~l~sgs~D~~I~iWd~~~~~~~~-~~~~~~~-------~~~~~v~~~s~---~~~~~~~~s~d~~v~iwd~~~~  176 (342)
                      ++-.  .|+++|.||.|+.|+++.-.... .......       .....+.++.+   +++.+++|+..|.|.--+-...
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            7543  49999999999999987432211 1111111       11222344444   4678999999998765332222


Q ss_pred             CCcc------cccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384          177 SQPE------QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA  250 (342)
Q Consensus       177 ~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  250 (342)
                      ....      +.......+.+..+.+.|=+..+...+.|..++  +|...-...+ .+.+..+.         ..|.+++
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vr--iWs~~~~~~P-l~~~~~~~---------~~v~~va  448 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVR--IWSEDVIASP-LLSLDSSP---------DYVTDVA  448 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeE--eccccCCCCc-chhhhhcc---------ceeeeeE
Confidence            1111      000111224467777777666555555576665  5776411111 11122221         1488999


Q ss_pred             EcCCCC-eEEEecCCCeEEEEeCCC--ceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          251 FHPIYG-TFATGGCDGFVNVWDGNN--KKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       251 ~sp~~~-~l~sgs~Dg~I~iWd~~~--~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      |||... .++++..||.|.+||+..  ...+.+..-.....+.+.|++.|+.|+.|...+           .+.++++++
T Consensus       449 WSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G-----------~~~~~~l~~  517 (555)
T KOG1587|consen  449 WSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANG-----------TTHILKLSE  517 (555)
T ss_pred             EcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCC-----------cEEEEEcCc
Confidence            999866 568888999999999863  334444444455678899999999999998777           588898987


Q ss_pred             CccccCC
Q 019384          328 IEVKPKP  334 (342)
Q Consensus       328 ~~~~~~~  334 (342)
                      --.+|.+
T Consensus       518 ~l~~~~~  524 (555)
T KOG1587|consen  518 SLAVPSP  524 (555)
T ss_pred             hhhccCc
Confidence            5555555

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.64  E-value=2.4e-15  Score=136.89  Aligned_cols=159  Identities=20%  Similarity=0.249  Sum_probs=119.3

Q ss_pred             CCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCcee--------eeeeecCCceEEEEEeC--CCCeEEEecCCcEEEEE
Q 019384           19 SDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANVL--------RGEFMHGGPVLDCCFHD--DSSGFSASADHTVRRLV   87 (342)
Q Consensus        19 ~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~~--------~~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i~~w~   87 (342)
                      ...|+.+.|+| |..+||.++.||.|+||.+..+.+        .-...|...|+++.|+|  .+.++++++|.+|++||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            46799999999 788999999999999999854321        12336999999999985  45678999999999999


Q ss_pred             eccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC
Q 019384           88 FSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR  166 (342)
Q Consensus        88 ~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~  166 (342)
                      +.+... ..+.+|++.|..++|+|+|++++|.+.||+|++|..++.....+.--+-...-...+-+..++..+++.+-|+
T Consensus       707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence            998874 4689999999999999999999999999999999988654311110000011111234566777777666664


Q ss_pred             ----eEEEEeCCCCC
Q 019384          167 ----HVNVYDLRNMS  177 (342)
Q Consensus       167 ----~v~iwd~~~~~  177 (342)
                          .|.+||..+..
T Consensus       787 ~SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  787 SSERQVQMYDAQTLD  801 (1012)
T ss_pred             cchhhhhhhhhhhcc
Confidence                47888876643

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=6.9e-14  Score=117.46  Aligned_cols=209  Identities=15%  Similarity=0.269  Sum_probs=136.9

Q ss_pred             cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec----cCCeEEEEEcCCeEEEE
Q 019384           96 LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL----VGNRLVVATAGRHVNVY  171 (342)
Q Consensus        96 ~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~----~~~~~~~~s~d~~v~iw  171 (342)
                      ..+|.+-|.++.|.+-|++++|||.|++|+|||.+..++.-.....-..+...+..+.+    .|..+++++.|++++||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            35788999999999999999999999999999976554432111110113344555555    35689999999999999


Q ss_pred             eCCCC--CCc-----ccccccccceeeEEEEEeeCC--ceEEEEccCCeEEEEEeechhhhhcccceeeeEEec---CCC
Q 019384          172 DLRNM--SQP-----EQRRESSLKYQTRCVRCYPNG--TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKS---EAG  239 (342)
Q Consensus       172 d~~~~--~~~-----~~~~~~~~~~~~~~v~~~~~~--~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~---~~~  239 (342)
                      .-...  +..     ........+..++.|.|.|..  -.+++++.||.++  +|+..+......|.+....+.   ..+
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lR--IYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILR--IYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEE--EEecCCccccccchhhhhhhhccCCcc
Confidence            86321  110     001111233457788888864  4567788888765  477655544444444321110   000


Q ss_pred             CceeeeeeEEEEcCC---CCeEEEecCC-----CeEEEEeCCCc----eeeeccCCCCcceEEEEECCC----CCEEEEE
Q 019384          240 RDIVYPVNAIAFHPI---YGTFATGGCD-----GFVNVWDGNNK----KRLYQYSKYPTSIAALSFSRD----GRLLAVA  303 (342)
Q Consensus       240 ~~~~~~v~~v~~sp~---~~~l~sgs~D-----g~I~iWd~~~~----~~~~~~~~~~~~V~~v~~spd----g~~las~  303 (342)
                      . ..-+..||.|+|.   .++||.|+.+     +.++||.....    ..+.++.+|+.+|++++|.|.    -++||++
T Consensus       167 ~-~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA  245 (361)
T KOG2445|consen  167 K-NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA  245 (361)
T ss_pred             c-ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence            0 1114668888875   3578888866     48899975432    345688899999999999995    4588888


Q ss_pred             Eecc
Q 019384          304 SSYT  307 (342)
Q Consensus       304 s~~~  307 (342)
                      +.++
T Consensus       246 ~kDg  249 (361)
T KOG2445|consen  246 TKDG  249 (361)
T ss_pred             ecCc
Confidence            8775

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.62  E-value=2.1e-13  Score=127.86  Aligned_cols=246  Identities=15%  Similarity=0.165  Sum_probs=157.9

Q ss_pred             CCCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCcee-------eeeeecCCceEEEEEeC---CCCeEEEecCCcE
Q 019384           15 GNPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANVL-------RGEFMHGGPVLDCCFHD---DSSGFSASADHTV   83 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~~-------~~~~~h~~~V~~~~~~~---~~~~~s~s~D~~i   83 (342)
                      .-.....|+++.|+| +.++||.|+++|.|-+||+..+..       ...-.|..+|+.+.|..   +..++++|.||.|
T Consensus       238 ~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i  317 (555)
T KOG1587|consen  238 VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSI  317 (555)
T ss_pred             EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcE
Confidence            334567999999999 677888999999999999976432       12235889999999962   2347899999999


Q ss_pred             EEEEeccCce---eec---ccC-------CcceeEEEEeCCC-CEEEEeeCCCcEEE---EcCCCCCCcceeee-eecCC
Q 019384           84 RRLVFSHGKE---DIL---GKH-------DAPVRCIEYSYAA-GQVITGSWDKSLKC---WDPRGASGQERTLV-GTYPQ  145 (342)
Q Consensus        84 ~~w~~~~~~~---~~~---~~h-------~~~V~~~~~~~~~-~~l~sgs~D~~I~i---Wd~~~~~~~~~~~~-~~~~~  145 (342)
                      ..|+++.-..   ..+   ..|       ...+++++|.+.. ..|+.|+.+|.|..   ++.+.......... ....+
T Consensus       318 ~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h  397 (555)
T KOG1587|consen  318 CSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITH  397 (555)
T ss_pred             eeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccccc
Confidence            9997654321   111   111       2458899998844 67899999998865   23322110000011 11123


Q ss_pred             CCcEEEEecc--C-CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce-EEEEccCCeEEEEEeechh
Q 019384          146 PERVYSLSLV--G-NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG-YALSSVEGRVAMEFFDLSE  221 (342)
Q Consensus       146 ~~~v~~~s~~--~-~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~s~~~~~~i~~~d~~~  221 (342)
                      ...+.++..+  . ..+++++ |-+++||.......+........ ..+..++|+|.... |+++..+|.+  .+||+..
T Consensus       398 ~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~-~~v~~vaWSptrpavF~~~d~~G~l--~iWDLl~  473 (555)
T KOG1587|consen  398 IGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSP-DYVTDVAWSPTRPAVFATVDGDGNL--DIWDLLQ  473 (555)
T ss_pred             CcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhcc-ceeeeeEEcCcCceEEEEEcCCCce--ehhhhhc
Confidence            3445555544  3 3455555 99999998763333433332222 23788999998764 4555667765  5699865


Q ss_pred             hhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          222 ASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       222 ~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      ....-......+         ....+.+.+++.|+.|+.|...|++++|++.
T Consensus       474 ~~~~Pv~s~~~~---------~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  474 DDEEPVLSQKVC---------SPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             cccCCccccccc---------ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            432221111111         1245667888889999999999999999985

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=3.8e-14  Score=128.44  Aligned_cols=237  Identities=16%  Similarity=0.154  Sum_probs=161.7

Q ss_pred             eeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCE-EEEeeCCCcEEEEcCCCCC
Q 019384           56 EFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ-VITGSWDKSLKCWDPRGAS  133 (342)
Q Consensus        56 ~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~sgs~D~~I~iWd~~~~~  133 (342)
                      ..+|.+.|.++...+.+.+ ++|+.||++++|.+.++++.......+.|.|++|+|.+.. ++..+.+..+.|-+..-++
T Consensus       396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~  475 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD  475 (733)
T ss_pred             EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence            3479999999999877765 5899999999999999986544445568999999997653 3444444445554432110


Q ss_pred             Ccc----eee---------------e--------------eecCCCCcEEEEecc--CCeEEEEEcCC---eEEEEeCCC
Q 019384          134 GQE----RTL---------------V--------------GTYPQPERVYSLSLV--GNRLVVATAGR---HVNVYDLRN  175 (342)
Q Consensus       134 ~~~----~~~---------------~--------------~~~~~~~~v~~~s~~--~~~~~~~s~d~---~v~iwd~~~  175 (342)
                      ...    ...               .              ....+...+..+++.  |++|++...++   .|.|.++..
T Consensus       476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK  555 (733)
T KOG0650|consen  476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK  555 (733)
T ss_pred             hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence            000    000               0              001122334455553  67888876653   588888865


Q ss_pred             CCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC
Q 019384          176 MSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY  255 (342)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~  255 (342)
                      ....  ..-...++.+.++.|+|...++++++..   .+++||+......++. +.+          ...|..++.||.|
T Consensus       556 ~~sQ--~PF~kskG~vq~v~FHPs~p~lfVaTq~---~vRiYdL~kqelvKkL-~tg----------~kwiS~msihp~G  619 (733)
T KOG0650|consen  556 RKSQ--SPFRKSKGLVQRVKFHPSKPYLFVATQR---SVRIYDLSKQELVKKL-LTG----------SKWISSMSIHPNG  619 (733)
T ss_pred             cccc--CchhhcCCceeEEEecCCCceEEEEecc---ceEEEehhHHHHHHHH-hcC----------CeeeeeeeecCCC
Confidence            4321  1111234567889999999888887753   3567998654333221 111          1258899999999


Q ss_pred             CeEEEecCCCeEEEEeCCCc-eeeeccCCCCcceEEEEECCCCCEEEEEEeccc
Q 019384          256 GTFATGGCDGFVNVWDGNNK-KRLYQYSKYPTSIAALSFSRDGRLLAVASSYTF  308 (342)
Q Consensus       256 ~~l~sgs~Dg~I~iWd~~~~-~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~  308 (342)
                      ..|+.|+.|+.+..+|++-. +..+++.-|...|.+|+|.+.-.++|+|+.++.
T Consensus       620 Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt  673 (733)
T KOG0650|consen  620 DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT  673 (733)
T ss_pred             CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence            99999999999999998743 566788889999999999999999999987653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.60  E-value=4e-14  Score=122.45  Aligned_cols=224  Identities=16%  Similarity=0.184  Sum_probs=144.3

Q ss_pred             ecCCceEEEEEe--CCCCeEEEecCCcEEEEEeccCc--------eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEE
Q 019384           58 MHGGPVLDCCFH--DDSSGFSASADHTVRRLVFSHGK--------EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKC  126 (342)
Q Consensus        58 ~h~~~V~~~~~~--~~~~~~s~s~D~~i~~w~~~~~~--------~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~i  126 (342)
                      +|.++|..+.|.  .|..+++||.|.+|.+|.+....        ...+.+|...|.-++|+|.. +.|+|++.|.+|++
T Consensus        79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i  158 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI  158 (472)
T ss_pred             CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence            799999999997  45566799999999999986543        23578999999999999965 67899999999999


Q ss_pred             EcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEE
Q 019384          127 WDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYA  204 (342)
Q Consensus       127 Wd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  204 (342)
                      |++.++..  ...   ..|+..+.++++  +|..+++.+.|+.||+||.+++...... ..+.......+.|..++..+-
T Consensus       159 Wnv~tgea--li~---l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~i~t  232 (472)
T KOG0303|consen  159 WNVGTGEA--LIT---LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGKIFT  232 (472)
T ss_pred             EeccCCce--eee---cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcceeEEeccCceee
Confidence            99986543  111   225555666555  6779999999999999999987554333 222233344555677777443


Q ss_pred             EEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeE-EEecCCCeEEEEeCCCcee-eecc
Q 019384          205 LSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTF-ATGGCDGFVNVWDGNNKKR-LYQY  281 (342)
Q Consensus       205 ~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l-~sgs~Dg~I~iWd~~~~~~-~~~~  281 (342)
                      +|- .-....+-+||...-....    ..+..+. +.    .|.-=-|.||..++ ++|--|+.||.|.+.+... +..+
T Consensus       233 TGfsr~seRq~aLwdp~nl~eP~----~~~elDt-Sn----Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyl  303 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNLEEPI----ALQELDT-SN----GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYL  303 (472)
T ss_pred             eccccccccceeccCcccccCcc----eeEEecc-CC----ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEe
Confidence            332 2223344568864322221    1111110 11    12222467887765 5677899999999876432 2222


Q ss_pred             CCC--CcceEEEEECCC
Q 019384          282 SKY--PTSIAALSFSRD  296 (342)
Q Consensus       282 ~~~--~~~V~~v~~spd  296 (342)
                      ..+  ..+=..+.|-|.
T Consensus       304 n~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  304 NTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             cccccCCcccccccccc
Confidence            221  223355566554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.60  E-value=5.2e-12  Score=114.12  Aligned_cols=245  Identities=13%  Similarity=0.085  Sum_probs=148.4

Q ss_pred             CCCeEEEEEcCCCCeEEEEe-CCCcEEEEECCC-cee--eeeeecCCceEEEEEeCCCCe-EEEe-cCCcEEEEEeccCc
Q 019384           19 SDGISNLRFSNHSDHLLVSS-WDKSVRLYDASA-NVL--RGEFMHGGPVLDCCFHDDSSG-FSAS-ADHTVRRLVFSHGK   92 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s-~Dgti~vwd~~~-~~~--~~~~~h~~~V~~~~~~~~~~~-~s~s-~D~~i~~w~~~~~~   92 (342)
                      ......++|+|++++|+.++ .++.|.+|++.. +++  .......+....+.|+++++. ++++ .++.+.+|+++...
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence            45678899999999987664 589999999863 433  222233445678889877765 4554 47889999986432


Q ss_pred             -e-ee--cccCCcceeEEEEeCCCCEEE-EeeCCCcEEEEcCCCCCCcc---eeeeee-cCCCCcEEEEeccCCeEEEEE
Q 019384           93 -E-DI--LGKHDAPVRCIEYSYAAGQVI-TGSWDKSLKCWDPRGASGQE---RTLVGT-YPQPERVYSLSLVGNRLVVAT  163 (342)
Q Consensus        93 -~-~~--~~~h~~~V~~~~~~~~~~~l~-sgs~D~~I~iWd~~~~~~~~---~~~~~~-~~~~~~v~~~s~~~~~~~~~s  163 (342)
                       . ..  ...+.....+++++|++++++ +...++.|.+||+++.....   ...... ......-..++.+++.++++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~  193 (330)
T PRK11028        114 IPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVN  193 (330)
T ss_pred             CCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEe
Confidence             1 11  112334467788999998875 55667999999987521110   000110 111122345667777777766


Q ss_pred             c-CCeEEEEeCCCC--CCc-ccccc---cc--cceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeE
Q 019384          164 A-GRHVNVYDLRNM--SQP-EQRRE---SS--LKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCH  233 (342)
Q Consensus       164 ~-d~~v~iwd~~~~--~~~-~~~~~---~~--~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h  233 (342)
                      . +++|.+||+...  ... .+...   ..  .......+.++|+++.++++.. ++.  |.+|++.....  ...+..+
T Consensus       194 ~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~--I~v~~i~~~~~--~~~~~~~  269 (330)
T PRK11028        194 ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL--ISVFSVSEDGS--VLSFEGH  269 (330)
T ss_pred             cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe--EEEEEEeCCCC--eEEEeEE
Confidence            5 789999999732  110 11000   00  0011234778999998888753 444  45577643221  1223333


Q ss_pred             EecCCCCceeeeeeEEEEcCCCCeEEEecC-CCeEEEEeCC
Q 019384          234 RKSEAGRDIVYPVNAIAFHPIYGTFATGGC-DGFVNVWDGN  273 (342)
Q Consensus       234 ~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~-Dg~I~iWd~~  273 (342)
                      ....      .....++++|+|++|+++.. +++|.+|+++
T Consensus       270 ~~~~------~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        270 QPTE------TQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             Eecc------ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            3221      12457899999999887664 8999999874

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=8.8e-14  Score=118.33  Aligned_cols=180  Identities=14%  Similarity=0.223  Sum_probs=118.8

Q ss_pred             CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEEEeCCCCCCccc-ccccccce
Q 019384          113 GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQPEQ-RRESSLKY  189 (342)
Q Consensus       113 ~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~~~~~~~~-~~~~~~~~  189 (342)
                      ..+|++-..|+|++||..++...  ..+..++.....+.|.-  .++.+.+|+.||+||+||+|......+ ......+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l--~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~  118 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLL--EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT  118 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhh--heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence            46888888999999998764321  11222222222233333  567899999999999999998643222 22222223


Q ss_pred             eeEEEEEeeCCceEEEEcc--CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC-CeEEEecCCCe
Q 019384          190 QTRCVRCYPNGTGYALSSV--EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY-GTFATGGCDGF  266 (342)
Q Consensus       190 ~~~~v~~~~~~~~~~~~s~--~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~-~~l~sgs~Dg~  266 (342)
                      ...|+.....++.++++..  .....+.+||.+..++...-....|..         -|++++|||.. ++|+|||.||.
T Consensus       119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D---------DVT~lrFHP~~pnlLlSGSvDGL  189 (376)
T KOG1188|consen  119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND---------DVTQLRFHPSDPNLLLSGSVDGL  189 (376)
T ss_pred             cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC---------cceeEEecCCCCCeEEeecccce
Confidence            4456655556667777753  344567899998776643333445544         49999999975 58999999999


Q ss_pred             EEEEeCCCce---eeeccCCCCcceEEEEECCCC--CEEEEE
Q 019384          267 VNVWDGNNKK---RLYQYSKYPTSIAALSFSRDG--RLLAVA  303 (342)
Q Consensus       267 I~iWd~~~~~---~~~~~~~~~~~V~~v~~spdg--~~las~  303 (342)
                      |.|+|++...   .+.....|.+.|.++.|..++  ++....
T Consensus       190 vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT  231 (376)
T KOG1188|consen  190 VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT  231 (376)
T ss_pred             EEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE
Confidence            9999987421   233444677889999999998  544433

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=8.9e-13  Score=107.51  Aligned_cols=257  Identities=11%  Similarity=0.080  Sum_probs=163.6

Q ss_pred             CeEEEEEcCCCCeEEEEeCCCcEEEEECCC---------c--eeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEec
Q 019384           21 GISNLRFSNHSDHLLVSSWDKSVRLYDASA---------N--VLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFS   89 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~---------~--~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~   89 (342)
                      .|.+-+++|-+++|+.|..+|+|-+..++.         +  ....+.+|.++|+.+.|. +..+++|+ ||.|+-|.+.
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~g-dG~V~gw~W~   89 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGG-DGLVYGWEWN   89 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-hhheeecc-CceEEEeeeh
Confidence            466778999999999999999999999853         1  145567899999999998 44555555 5999999875


Q ss_pred             cCce---------eecccCC-----cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec-
Q 019384           90 HGKE---------DILGKHD-----APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL-  154 (342)
Q Consensus        90 ~~~~---------~~~~~h~-----~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~-  154 (342)
                      ...+         .....|.     ..|+++-..|..+.++.++.|+.|.-||++++..  ...+.  .|+..+-++.. 
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i--~r~~r--GHtDYvH~vv~R  165 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI--QREYR--GHTDYVHSVVGR  165 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE--EEEEc--CCcceeeeeeec
Confidence            4332         1112233     4588898898877788888999999999987543  12222  23444444433 


Q ss_pred             c-CCeEEEEEcCCeEEEEeCCCCCCccccc--------ccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhc
Q 019384          155 V-GNRLVVATAGRHVNVYDLRNMSQPEQRR--------ESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQA  225 (342)
Q Consensus       155 ~-~~~~~~~s~d~~v~iwd~~~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~  225 (342)
                      + ...+++++.||++|+||.++.+......        .++....+-+++...  ..+++| .+-.  +.+|.++.....
T Consensus       166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e--dWlvCG-gGp~--lslwhLrsse~t  240 (325)
T KOG0649|consen  166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--DWLVCG-GGPK--LSLWHLRSSEST  240 (325)
T ss_pred             ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--ceEEec-CCCc--eeEEeccCCCce
Confidence            2 3479999999999999999875421110        011111233443332  234433 3333  456998876666


Q ss_pred             ccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEE
Q 019384          226 KKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVA  303 (342)
Q Consensus       226 ~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~  303 (342)
                      ..+.+++|.+            -|.|-  ...++++++.+-|.-|... +..-...+.....+++..++...--+++.
T Consensus       241 ~vfpipa~v~------------~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~  303 (325)
T KOG0649|consen  241 CVFPIPARVH------------LVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISI  303 (325)
T ss_pred             EEEeccccee------------Eeeee--cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEe
Confidence            6676666543            45563  4568888888889999765 33333333333345666665554434333

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.57  E-value=2.9e-13  Score=114.46  Aligned_cols=232  Identities=19%  Similarity=0.274  Sum_probs=158.6

Q ss_pred             CCCeEEEEEc-------CCCCeEEEEeCCCcEEEEECCCceeeeee---ecCCce---EEEEEeCCCCeEEEecCCcEEE
Q 019384           19 SDGISNLRFS-------NHSDHLLVSSWDKSVRLYDASANVLRGEF---MHGGPV---LDCCFHDDSSGFSASADHTVRR   85 (342)
Q Consensus        19 ~~~V~~l~fs-------~~~~~l~s~s~Dgti~vwd~~~~~~~~~~---~h~~~V---~~~~~~~~~~~~s~s~D~~i~~   85 (342)
                      ..-|+.-+|-       |+..++|+.+.|.-|.+||.-+++++..+   .|.+.+   .+++|++|+..+.|+....|++
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirv  183 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRV  183 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEE
Confidence            4667777776       67789999999999999999998877653   576665   4799999999999999999999


Q ss_pred             EEecc-Cc-eee--cc-----cCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc
Q 019384           86 LVFSH-GK-EDI--LG-----KHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV  155 (342)
Q Consensus        86 w~~~~-~~-~~~--~~-----~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~  155 (342)
                      +++.. ++ ...  ..     +..+.|.|++|+|.. +.++.|+.-.++-|+.-....  ....+..+....+-..+..+
T Consensus       184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~--pl~llggh~gGvThL~~~ed  261 (406)
T KOG2919|consen  184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR--PLQLLGGHGGGVTHLQWCED  261 (406)
T ss_pred             eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC--ceeeecccCCCeeeEEeccC
Confidence            99843 33 111  11     235678899999965 478889988877666432221  12334444444555566778


Q ss_pred             CCeEEEEEc-CCeEEEEeCCCCCCcccccccccc--eeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeee
Q 019384          156 GNRLVVATA-GRHVNVYDLRNMSQPEQRRESSLK--YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKC  232 (342)
Q Consensus       156 ~~~~~~~s~-d~~v~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~  232 (342)
                      ++.+.+++. |..|..||+|....+.-...-+..  .+-..+...|+++.+++|+.+|.|++  ||+..-.. ....+..
T Consensus       262 Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~v--wdlk~~gn-~~sv~~~  338 (406)
T KOG2919|consen  262 GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRV--WDLKDLGN-EVSVTGN  338 (406)
T ss_pred             cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEE--EecCCCCC-ccccccc
Confidence            888887754 457999999987655433322222  11123445688999999999998765  99854211 1111222


Q ss_pred             EEecCCCCceeeeeeEEEEcCCCCeEEEecCC
Q 019384          233 HRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD  264 (342)
Q Consensus       233 h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D  264 (342)
                      |..         .++.|+++|-=.++|+++-.
T Consensus       339 ~sd---------~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  339 YSD---------TVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ccc---------cccceecCcccceeeeccCc
Confidence            222         48899999997788888743

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.55  E-value=8.9e-13  Score=110.06  Aligned_cols=234  Identities=17%  Similarity=0.135  Sum_probs=152.3

Q ss_pred             CCCCCeEEEEEcCCC-----CeEEEEeCCCcEEEEECCC--ceeee--------eeecCCceEEEEEe--CCCCeEEEec
Q 019384           17 PPSDGISNLRFSNHS-----DHLLVSSWDKSVRLYDASA--NVLRG--------EFMHGGPVLDCCFH--DDSSGFSASA   79 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~-----~~l~s~s~Dgti~vwd~~~--~~~~~--------~~~h~~~V~~~~~~--~~~~~~s~s~   79 (342)
                      .|.=.++.+-|.|+.     ++|||+  +.-+|||.+..  .....        ...+..++++..|.  +...+.+.|-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            456678899999986     345554  34699999863  22111        12356788888886  3445568899


Q ss_pred             CCcEEEEEeccCc----eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCC-CCcEEEEe
Q 019384           80 DHTVRRLVFSHGK----EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ-PERVYSLS  153 (342)
Q Consensus        80 D~~i~~w~~~~~~----~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~-~~~v~~~s  153 (342)
                      |-+-.+||++++.    ..-+..|.+.|..++|..++ +.|+|++.||.+|++|+|...  ..+++..... ......++
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le--HSTIIYE~p~~~~pLlRLs  249 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE--HSTIIYEDPSPSTPLLRLS  249 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc--cceEEecCCCCCCcceeec
Confidence            9999999999873    23467899999999999865 578999999999999998532  2233322222 33456677


Q ss_pred             cc---CCeEEEEEcC-CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh-cccc
Q 019384          154 LV---GNRLVVATAG-RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ-AKKY  228 (342)
Q Consensus       154 ~~---~~~~~~~s~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~-~~~~  228 (342)
                      ++   ++.+++...| ..|.+.|+|....+..+. ..+...++.++|.|.....++...|.... .+||+.+... ...-
T Consensus       250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L-~~H~a~VNgIaWaPhS~~hictaGDD~qa-liWDl~q~~~~~~~d  327 (364)
T KOG0290|consen  250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL-RNHQASVNGIAWAPHSSSHICTAGDDCQA-LIWDLQQMPRENGED  327 (364)
T ss_pred             cCcCCchHHhhhhcCCceEEEEEecCCCcceehh-hcCcccccceEecCCCCceeeecCCcceE-EEEecccccccCCCC
Confidence            75   4566665555 579999999876554433 23455688999999876554444443333 4799854322 1100


Q ss_pred             eeeeEEecCCCCceeeeeeEEEEcCC-CCeEEEecC
Q 019384          229 AFKCHRKSEAGRDIVYPVNAIAFHPI-YGTFATGGC  263 (342)
Q Consensus       229 ~~~~h~~~~~~~~~~~~v~~v~~sp~-~~~l~sgs~  263 (342)
                      .+..       ....+.|+.+.|+|. +.+++.+..
T Consensus       328 Pila-------y~a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  328 PILA-------YTAGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             chhh-------hhccceeeeeeecccCCCEEEEEec
Confidence            0000       001235899999865 557777653

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.52  E-value=1.3e-12  Score=109.11  Aligned_cols=159  Identities=15%  Similarity=0.191  Sum_probs=118.7

Q ss_pred             CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eee------eecCCceEEEEEeC--CCCeEEEecCCcEE
Q 019384           14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGE------FMHGGPVLDCCFHD--DSSGFSASADHTVR   84 (342)
Q Consensus        14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~------~~h~~~V~~~~~~~--~~~~~s~s~D~~i~   84 (342)
                      |-+++-..|.+|-|-|++..||+-. |..|.+|++..+.. ...      ..|....++..|+|  ++..+.+..|++++
T Consensus       118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~  196 (370)
T KOG1007|consen  118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQ  196 (370)
T ss_pred             CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEE
Confidence            3345566899999999999998765 99999999976532 222      23566778888974  67778888999999


Q ss_pred             EEEeccCcee--ecccCCcceeEEEEeCCCC-EEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC---Ce
Q 019384           85 RLVFSHGKED--ILGKHDAPVRCIEYSYAAG-QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG---NR  158 (342)
Q Consensus        85 ~w~~~~~~~~--~~~~h~~~V~~~~~~~~~~-~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~---~~  158 (342)
                      .||+++....  .-..|...|+.++|+|+-+ .|+||+.|+.||+||+|+.+...   .....+..-+.++-+++   ..
T Consensus       197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv---~el~~HsHWvW~VRfn~~hdqL  273 (370)
T KOG1007|consen  197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV---QELPGHSHWVWAVRFNPEHDQL  273 (370)
T ss_pred             EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc---cccCCCceEEEEEEecCccceE
Confidence            9999976642  3467999999999999764 57899999999999998643221   12223444455555543   36


Q ss_pred             EEEEEcCCeEEEEeCCCC
Q 019384          159 LVVATAGRHVNVYDLRNM  176 (342)
Q Consensus       159 ~~~~s~d~~v~iwd~~~~  176 (342)
                      +++++.|..|.+|.+...
T Consensus       274 iLs~~SDs~V~Lsca~sv  291 (370)
T KOG1007|consen  274 ILSGGSDSAVNLSCASSV  291 (370)
T ss_pred             EEecCCCceeEEEecccc
Confidence            889999999999987654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.52  E-value=1.3e-12  Score=113.55  Aligned_cols=115  Identities=20%  Similarity=0.215  Sum_probs=97.2

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECC--------C------ce---eeeeeecCCceEEEEEeCCCCe-EEE
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDAS--------A------NV---LRGEFMHGGPVLDCCFHDDSSG-FSA   77 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~--------~------~~---~~~~~~h~~~V~~~~~~~~~~~-~s~   77 (342)
                      ..|..+|+.++|+|+|++||||+.+|.|.+|...        +      ..   .+...+|...|+.++|++++.. +++
T Consensus        62 s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~  141 (434)
T KOG1009|consen   62 SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG  141 (434)
T ss_pred             cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee
Confidence            5788999999999999999999999999999875        2      11   2234469999999999977665 699


Q ss_pred             ecCCcEEEEEeccCcee-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCC
Q 019384           78 SADHTVRRLVFSHGKED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR  130 (342)
Q Consensus        78 s~D~~i~~w~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~  130 (342)
                      +.|.++++||+..+... .+.+|...|..++|.|-++++++-|.|...+.+.+.
T Consensus       142 s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  142 SVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             eccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence            99999999999998854 567899999999999999999999999866666543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=9.1e-12  Score=117.81  Aligned_cols=267  Identities=16%  Similarity=0.192  Sum_probs=161.6

Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCC----CeEEEecCCcEEEEEeccCcee-ecc
Q 019384           24 NLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDS----SGFSASADHTVRRLVFSHGKED-ILG   97 (342)
Q Consensus        24 ~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~----~~~s~s~D~~i~~w~~~~~~~~-~~~   97 (342)
                      .-.||+|++.++. ..+..|+||-..++.+.. .-.|..++..+.+.+..    .+++++.||+|++|++..+... ++.
T Consensus        21 ~avfSnD~k~l~~-~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~   99 (792)
T KOG1963|consen   21 PAVFSNDAKFLFL-CTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD   99 (792)
T ss_pred             ccccccCCcEEEE-eeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence            3578999988874 456689999998886554 44789999999986433    3469999999999999887743 222


Q ss_pred             cCCcceeEEEEeC---CCCEEE-EeeCC------------CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEE
Q 019384           98 KHDAPVRCIEYSY---AAGQVI-TGSWD------------KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVV  161 (342)
Q Consensus        98 ~h~~~V~~~~~~~---~~~~l~-sgs~D------------~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~  161 (342)
                      .+ -.+..+.+.|   +...++ -+..|            +.++-+.+.+.............. ..++..+..++....
T Consensus       100 ~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i  177 (792)
T KOG1963|consen  100 NN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGI  177 (792)
T ss_pred             cC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEE
Confidence            21 1222222211   001111 12222            222222221110000000001101 123334444444444


Q ss_pred             EEcCCeEEEEeCCCCCC--cccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechh--hhhcccceeeeEEecC
Q 019384          162 ATAGRHVNVYDLRNMSQ--PEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSE--ASQAKKYAFKCHRKSE  237 (342)
Q Consensus       162 ~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~--~~~~~~~~~~~h~~~~  237 (342)
                      +. ...+.+|+......  ........+...++|++++|++..++++..+|++.+  |..-.  ........+.-|..  
T Consensus       178 ~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~v--w~d~~~~~~~~t~t~lHWH~~--  252 (792)
T KOG1963|consen  178 VH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILV--WRDFGSSDDSETCTLLHWHHD--  252 (792)
T ss_pred             EE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEE--EeccccccccccceEEEeccc--
Confidence            44 34577887765321  111111223344789999999999999999998765  54322  11111122222322  


Q ss_pred             CCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          238 AGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       238 ~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                             +|++++|+++|.+|.||+..|-+-+|..++++ -+-++.-.++|..+.+|||+.+.+....+
T Consensus       253 -------~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~D  313 (792)
T KOG1963|consen  253 -------EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLED  313 (792)
T ss_pred             -------ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecC
Confidence                   59999999999999999999999999999877 44456777899999999999988887764

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.52  E-value=2.1e-12  Score=109.15  Aligned_cols=244  Identities=14%  Similarity=0.128  Sum_probs=165.8

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce----eeeeeecCCceEEEEEeCCC-CeEEEecCCcEEEEEeccC-c
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV----LRGEFMHGGPVLDCCFHDDS-SGFSASADHTVRRLVFSHG-K   92 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~----~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~-~   92 (342)
                      .+.|++.+|++|+..+|.+.....|-||...+..    ...+..|.+.|++++|.+.. ++++|+.|..-.+|....+ .
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            4679999999999999999999999999976543    33445799999999998654 7899999999999987333 3


Q ss_pred             ---eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeee--cCCCCcEEEEeccCC--eEEEEEcC
Q 019384           93 ---EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGT--YPQPERVYSLSLVGN--RLVVATAG  165 (342)
Q Consensus        93 ---~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~--~~~~~~v~~~s~~~~--~~~~~s~d  165 (342)
                         ...+..|..+.+++.|+|..++|+.||.-+.|.+|=.+....  -.....  .....+|.++++.++  .+++++.|
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd--WWVsKhikkPirStv~sldWhpnnVLlaaGs~D  167 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND--WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD  167 (361)
T ss_pred             eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc--eehhhhhCCccccceeeeeccCCcceecccccC
Confidence               235667899999999999999999999999999987653221  000111  122345778888766  56778888


Q ss_pred             CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384          166 RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP  245 (342)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~  245 (342)
                      +..|+|..--... .++.. +          .|                  |+.+...........         ...+-
T Consensus       168 ~k~rVfSayIK~V-dekpa-p----------~p------------------Wgsk~PFG~lm~E~~---------~~ggw  208 (361)
T KOG1523|consen  168 GKCRVFSAYIKGV-DEKPA-P----------TP------------------WGSKMPFGQLMSEAS---------SSGGW  208 (361)
T ss_pred             cceeEEEEeeecc-ccCCC-C----------CC------------------CccCCcHHHHHHhhc---------cCCCc
Confidence            8888886421100 00000 0          01                  111000000000000         11125


Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEEeCCCce-eeeccCCCCcceEEEEECCCCCEEEEE
Q 019384          246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKK-RLYQYSKYPTSIAALSFSRDGRLLAVA  303 (342)
Q Consensus       246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~-~~~~~~~~~~~V~~v~~spdg~~las~  303 (342)
                      |..+.|+|.|..|+=-+.|.++.+=|..... .+..+....-+..++.|-.+...+++|
T Consensus       209 vh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag  267 (361)
T KOG1523|consen  209 VHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAG  267 (361)
T ss_pred             eeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecC
Confidence            8889999999999999999999999987654 344443333567888887777766554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=3e-13  Score=118.07  Aligned_cols=189  Identities=17%  Similarity=0.160  Sum_probs=129.9

Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEECC-CceeeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCceee--c-c
Q 019384           23 SNLRFSNHSDHLLVSSWDKSVRLYDAS-ANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDI--L-G   97 (342)
Q Consensus        23 ~~l~fs~~~~~l~s~s~Dgti~vwd~~-~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~~~--~-~   97 (342)
                      -.++|+.+|..|++++.||++|||+.. ...+..+..|.+.|.++.|++|+++ ++.+.| ..++|+..++....  - .
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            579999999999999999999999954 4455667789999999999988865 577888 89999998874211  1 1


Q ss_pred             cCCcceeEEEEeCCC---C-EEEE-eeCCCcEEEEcCCCCCC----cceeeeeecCCCCcEEEEeccCCeEEEEEcCCeE
Q 019384           98 KHDAPVRCIEYSYAA---G-QVIT-GSWDKSLKCWDPRGASG----QERTLVGTYPQPERVYSLSLVGNRLVVATAGRHV  168 (342)
Q Consensus        98 ~h~~~V~~~~~~~~~---~-~l~s-gs~D~~I~iWd~~~~~~----~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v  168 (342)
                      .-......|.|+.|+   . ++++ -..-+.|+.||+..-.+    ..++.+..+ .....+.++.+++.++.++.||.|
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-KSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc-CcceeEEEcCCCcEEEEeccCCcE
Confidence            222345677887765   2 2333 23334667666532111    111111111 133455677788999999999999


Q ss_pred             EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEE
Q 019384          169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAM  214 (342)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i  214 (342)
                      -+++..+.+...... ..+...++.+.|+|+.+..+..+.+....+
T Consensus       306 ai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v  350 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAV  350 (398)
T ss_pred             EEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeE
Confidence            999998765433322 234457899999999998888777766554

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.51  E-value=1.2e-11  Score=111.22  Aligned_cols=191  Identities=15%  Similarity=0.187  Sum_probs=120.1

Q ss_pred             eEEEecCCcEEEEEeccCceee-cc----cCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC
Q 019384           74 GFSASADHTVRRLVFSHGKEDI-LG----KHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE  147 (342)
Q Consensus        74 ~~s~s~D~~i~~w~~~~~~~~~-~~----~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~  147 (342)
                      ++.+-.-|.+++.|....+... +.    --+..|+|+.|-|.+ .+|+.+-.+|.+.++|.+.....          +.
T Consensus       188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~----------t~  257 (636)
T KOG2394|consen  188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA----------TA  257 (636)
T ss_pred             eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC----------CC
Confidence            4566666677766655433211 11    123679999999854 56788889999999986421110          00


Q ss_pred             cEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccc
Q 019384          148 RVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK  227 (342)
Q Consensus       148 ~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~  227 (342)
                      .....-..++.+....       |--...+.+..+... -...++.++|+|||+.+++.+.|+..+|  ||.........
T Consensus       258 p~~~~~k~~~~f~i~t-------~ksk~~rNPv~~w~~-~~g~in~f~FS~DG~~LA~VSqDGfLRv--F~fdt~eLlg~  327 (636)
T KOG2394|consen  258 PSYQALKDGDQFAILT-------SKSKKTRNPVARWHI-GEGSINEFAFSPDGKYLATVSQDGFLRI--FDFDTQELLGV  327 (636)
T ss_pred             CcccccCCCCeeEEee-------eeccccCCccceeEe-ccccccceeEcCCCceEEEEecCceEEE--eeccHHHHHHH
Confidence            0111111233332211       111111111111110 1124667889999999999999998766  55532211110


Q ss_pred             ceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECC
Q 019384          228 YAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSR  295 (342)
Q Consensus       228 ~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~sp  295 (342)
                      .           ....+...||+|||||++|++|++|--|.||.....+.++.-++|+++|..|+|.|
T Consensus       328 m-----------kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  328 M-----------KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             H-----------HhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            0           01123588999999999999999999999999999999999999999999999997

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.4e-12  Score=121.77  Aligned_cols=188  Identities=19%  Similarity=0.136  Sum_probs=124.2

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCC---CcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEE-ecCCcEEEE--Eec
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWD---KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSA-SADHTVRRL--VFS   89 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~D---gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~-s~D~~i~~w--~~~   89 (342)
                      .+...|.+.+|||||++|+.++.+   ..|++||+.++.........+......|+|++.. +.+ +.++.+.+|  ++.
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~  280 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN  280 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECC
Confidence            456679999999999999988765   3699999987653332223344557899988764 443 467776666  445


Q ss_pred             cCceeecccCCcceeEEEEeCCCCEEEEee-CCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeE
Q 019384           90 HGKEDILGKHDAPVRCIEYSYAAGQVITGS-WDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHV  168 (342)
Q Consensus        90 ~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs-~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v  168 (342)
                      ++....+..+...+.+.+|+||++.|+.++ .++..+||+++...... ..+. ...  ....++++++.+++++.++ +
T Consensus       281 ~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~-~~~--~~~~~SpDG~~ia~~~~~~-i  355 (429)
T PRK01742        281 GGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLVG-GRG--YSAQISADGKTLVMINGDN-V  355 (429)
T ss_pred             CCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEec-CCC--CCccCCCCCCEEEEEcCCC-E
Confidence            555556666777788999999999776544 57888999865432221 1221 111  2235677788888777654 6


Q ss_pred             EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEE
Q 019384          169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA  213 (342)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~  213 (342)
                      .+||+.++......  ..  .....+.|+|+++.++.++.++...
T Consensus       356 ~~~Dl~~g~~~~lt--~~--~~~~~~~~sPdG~~i~~~s~~g~~~  396 (429)
T PRK01742        356 VKQDLTSGSTEVLS--ST--FLDESPSISPNGIMIIYSSTQGLGK  396 (429)
T ss_pred             EEEECCCCCeEEec--CC--CCCCCceECCCCCEEEEEEcCCCce
Confidence            66999876432111  11  1224567999999999888776654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.50  E-value=6.2e-12  Score=122.61  Aligned_cols=257  Identities=16%  Similarity=0.155  Sum_probs=154.0

Q ss_pred             CCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCC-----ce--eeeeee-cCCceEEEEEeC-CCCeEEEecCCcEEE
Q 019384           16 NPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASA-----NV--LRGEFM-HGGPVLDCCFHD-DSSGFSASADHTVRR   85 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~-----~~--~~~~~~-h~~~V~~~~~~~-~~~~~s~s~D~~i~~   85 (342)
                      .+|+..|..++-+++ +.+++|||.|||||+||...     +.  ...++. ....+.++.+.+ +.+++.++.||.|++
T Consensus      1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred             hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence            477888888888875 59999999999999999853     11  222233 466788888764 445667899999999


Q ss_pred             EEeccCcee--------ec--ccCCcceeEEEEeCCC-C-EEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEe
Q 019384           86 LVFSHGKED--------IL--GKHDAPVRCIEYSYAA-G-QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLS  153 (342)
Q Consensus        86 w~~~~~~~~--------~~--~~h~~~V~~~~~~~~~-~-~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s  153 (342)
                      ..++..+..        ..  .+....|.+-+|.... . .|+-+..-+.|-.||+++....  ..+.....++.+.+++
T Consensus      1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~--w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA--WRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred             EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH--HhhhcCccccceeEEE
Confidence            998773211        11  1222345555665433 3 5666777789999999864321  1122222234455554


Q ss_pred             c--cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCC---ceEEEEccCCeEEEEEeechhhhhcccc
Q 019384          154 L--VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG---TGYALSSVEGRVAMEFFDLSEASQAKKY  228 (342)
Q Consensus       154 ~--~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~s~~~~~~i~~~d~~~~~~~~~~  228 (342)
                      .  .++.+++|+..|.+-+||+|=. .+...-..+....++.+..+|--   ...++++..+...+..|+...+.  +.+
T Consensus      1203 idp~~~WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~--~~~ 1279 (1431)
T KOG1240|consen 1203 IDPWCNWLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL--RQT 1279 (1431)
T ss_pred             ecCCceEEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc--ceE
Confidence            4  4568999999999999999853 33333333333445555555432   33444444345566778875442  222


Q ss_pred             eeeeEEe---cCCC-------CceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCcee
Q 019384          229 AFKCHRK---SEAG-------RDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKR  277 (342)
Q Consensus       229 ~~~~h~~---~~~~-------~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~  277 (342)
                      .+-...+   .+..       ....-+...+++.-.+.++.+|+.|..||.||......
T Consensus      1280 vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1280 VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence            2221100   0000       01111223345555577899999999999999876543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.50  E-value=3.2e-11  Score=103.97  Aligned_cols=239  Identities=17%  Similarity=0.195  Sum_probs=153.3

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-eeeeeeecCCceEEEEEeCCCCeEEEecCCc--EEEEEeccCce
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-VLRGEFMHGGPVLDCCFHDDSSGFSASADHT--VRRLVFSHGKE   93 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~--i~~w~~~~~~~   93 (342)
                      .....+....|+.+...|..|+.|| -++|..... +.......+-.|.-..|+.. .++..+.+..  +++.++..+..
T Consensus         3 ~~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS-LvaiV~~~qpr~Lkv~~~Kk~~~   80 (391)
T KOG2110|consen    3 GKKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS-LVAIVSIKQPRKLKVVHFKKKTT   80 (391)
T ss_pred             CCCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc-eeEEEecCCCceEEEEEcccCce
Confidence            3455778888999999999999998 488887543 22221112223445556433 3334444443  66666655443


Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC--eEEE--EEcCCeEE
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN--RLVV--ATAGRHVN  169 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~--~~~~--~s~d~~v~  169 (342)
                      ..-.-....|.++.++.  ++|+.+=.+. |.|+|++.= +..........++..+.+++++..  +++.  ....|.|.
T Consensus        81 ICe~~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   81 ICEIFFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDM-KLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             EEEEecCCceEEEEEcc--ceEEEEEccc-EEEEecccc-eeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence            22122235788999875  5666665544 999998741 111111111134455777887654  4442  23347899


Q ss_pred             EEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384          170 VYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI  249 (342)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  249 (342)
                      +||+.+.+.. ... ..++..+.|++++++|..++++|..|++ |++|.+.+.+.  .+.++--..       .-.|.++
T Consensus       157 l~d~~nl~~v-~~I-~aH~~~lAalafs~~G~llATASeKGTV-IRVf~v~~G~k--l~eFRRG~~-------~~~IySL  224 (391)
T KOG2110|consen  157 LFDTINLQPV-NTI-NAHKGPLAALAFSPDGTLLATASEKGTV-IRVFSVPEGQK--LYEFRRGTY-------PVSIYSL  224 (391)
T ss_pred             EEEcccceee-eEE-EecCCceeEEEECCCCCEEEEeccCceE-EEEEEcCCccE--eeeeeCCce-------eeEEEEE
Confidence            9999876332 222 2566778999999999999999999996 68899865543  333332111       1258899


Q ss_pred             EEcCCCCeEEEecCCCeEEEEeCC
Q 019384          250 AFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       250 ~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      +|+|++++|++.|.-++|+|+.++
T Consensus       225 ~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  225 SFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             EECCCCCeEEEecCCCeEEEEEec
Confidence            999999999999999999999865

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=8.7e-12  Score=116.37  Aligned_cols=235  Identities=11%  Similarity=0.056  Sum_probs=146.4

Q ss_pred             CcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EEe---cCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEE
Q 019384           41 KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SAS---ADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVI  116 (342)
Q Consensus        41 gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s---~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~  116 (342)
                      ..|.+||..+...+....+...+.+..|+|+++.+ ..+   .+..+.+|++.+++...+......+...+|+|||+.|+
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La  258 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA  258 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence            47889998776555544567789999999888754 333   23468888888776554443444456789999999886


Q ss_pred             Ee-eCCC--cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC-CeEEEE--eCCCCCCccccccccccee
Q 019384          117 TG-SWDK--SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG-RHVNVY--DLRNMSQPEQRRESSLKYQ  190 (342)
Q Consensus       117 sg-s~D~--~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d-~~v~iw--d~~~~~~~~~~~~~~~~~~  190 (342)
                      .. +.++  .|.+||++++..  . .+...........++++++.++..+.. +...+|  |+.++..  ..... ....
T Consensus       259 ~~~~~~g~~~I~~~d~~tg~~--~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~--~~lt~-~~~~  332 (429)
T PRK03629        259 FALSKTGSLNLYVMDLASGQI--R-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP--QRITW-EGSQ  332 (429)
T ss_pred             EEEcCCCCcEEEEEECCCCCE--E-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe--EEeec-CCCC
Confidence            43 4454  588899875432  1 121111222334577777888777654 344444  6655422  11111 1112


Q ss_pred             eEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCe---
Q 019384          191 TRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGF---  266 (342)
Q Consensus       191 ~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~---  266 (342)
                      .....++|+|+.++..+ .++...+++||...... .  .+..      .    .......|+|||++|+.++.|+.   
T Consensus       333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~--~Lt~------~----~~~~~p~~SpDG~~i~~~s~~~~~~~  399 (429)
T PRK03629        333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-Q--VLTD------T----FLDETPSIAPNGTMVIYSSSQGMGSV  399 (429)
T ss_pred             ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-E--EeCC------C----CCCCCceECCCCCEEEEEEcCCCceE
Confidence            34567899999887654 34445677788754321 1  1110      0    01234679999999988887764   


Q ss_pred             EEEEeCCCceeeeccCCCCcceEEEEECC
Q 019384          267 VNVWDGNNKKRLYQYSKYPTSIAALSFSR  295 (342)
Q Consensus       267 I~iWd~~~~~~~~~~~~~~~~V~~v~~sp  295 (342)
                      ++++++. ++..+.+.+|.+.+...+|||
T Consensus       400 l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        400 LNLVSTD-GRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             EEEEECC-CCCeEECccCCCCcCCcccCC
Confidence            6777774 555666777888899999998

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.49  E-value=7.2e-13  Score=118.89  Aligned_cols=179  Identities=15%  Similarity=0.165  Sum_probs=122.5

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEec-cCcee
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFS-HGKED   94 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~-~~~~~   94 (342)
                      ..|.+.|.+-+|+|||.-|+|++.||.|++|.-++-..........+|.|++|.|+..-+.-+..+.+.+=.+. +.+..
T Consensus       101 ~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i  180 (737)
T KOG1524|consen  101 SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKII  180 (737)
T ss_pred             hhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeeccccccee
Confidence            36778999999999999999999999999998654322223346678999999866543322223333222222 22244


Q ss_pred             ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeE-EEEEcCCeEEEEeC
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRL-VVATAGRHVNVYDL  173 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~-~~~s~d~~v~iwd~  173 (342)
                      ....|.+-|.|++|++..+.|+||+.|-..|+||-...     ..+.+..+.-.+.+++++++.+ +.++. .+.|+=. 
T Consensus       181 ~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-----~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt~R~~~-  253 (737)
T KOG1524|consen  181 RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-----NLFTSAAEEYAITSVAFNPEKDYLLWSY-NTARFSS-  253 (737)
T ss_pred             EEeccCcEEEEeecCccccceeecCCceeEEeecccCc-----ccccCChhccceeeeeeccccceeeeee-eeeeecC-
Confidence            56789999999999999999999999999999996421     1222323344566777776643 33333 3444111 


Q ss_pred             CCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEE
Q 019384          174 RNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA  213 (342)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~  213 (342)
                                  +-.+.+..++|++||..++++...|.+.
T Consensus       254 ------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~  281 (737)
T KOG1524|consen  254 ------------PRVGSIFNLSWSADGTQATCGTSTGQLI  281 (737)
T ss_pred             ------------CCccceEEEEEcCCCceeeccccCceEE
Confidence                        1123567789999999999998888754

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.48  E-value=3.2e-11  Score=102.05  Aligned_cols=229  Identities=17%  Similarity=0.247  Sum_probs=133.4

Q ss_pred             ceEEEEEeCCCCeEEEecCCcEEEEEeccCceeeccc-CCcceeEEEEeCCCCEE-EEeeCC------CcEEEEcCCCCC
Q 019384           62 PVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGK-HDAPVRCIEYSYAAGQV-ITGSWD------KSLKCWDPRGAS  133 (342)
Q Consensus        62 ~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l-~sgs~D------~~I~iWd~~~~~  133 (342)
                      ....++|..|..-++++.|.-.+++..+--++..-.. +...+.-+..--..++| +.|+..      ..+.|||-..  
T Consensus         7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k--   84 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK--   84 (346)
T ss_pred             ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc--
Confidence            3456899888888888888888999875432211110 11111101111112333 334443      4899999321  


Q ss_pred             CcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEE
Q 019384          134 GQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA  213 (342)
Q Consensus       134 ~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~  213 (342)
                      .  + .+....-...|.++.+.++.|+++.. +.|.+|...+.-......+...+-.-.|....-.+..++..-.-....
T Consensus        85 ~--~-~i~el~f~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq  160 (346)
T KOG2111|consen   85 E--R-CIIELSFNSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ  160 (346)
T ss_pred             C--c-EEEEEEeccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence            1  1 12222233456677778888887665 579999876432111111100000012222222222222222222233


Q ss_pred             EEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCe-EEEEeCCCceeeeccCC--CCcceEE
Q 019384          214 MEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGF-VNVWDGNNKKRLYQYSK--YPTSIAA  290 (342)
Q Consensus       214 i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~-I~iWd~~~~~~~~~~~~--~~~~V~~  290 (342)
                      +.+.|+..........+.+|..         .|.|++.+-+|.+|||+|..|| |||||.++++.++++..  -...|++
T Consensus       161 vQi~dL~~~~~~~p~~I~AH~s---------~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~  231 (346)
T KOG2111|consen  161 VQIVDLASTKPNAPSIINAHDS---------DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYC  231 (346)
T ss_pred             EEEEEhhhcCcCCceEEEcccC---------ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence            4567775432212245667765         5999999999999999999997 89999999999988763  2458999


Q ss_pred             EEECCCCCEEEEEEe
Q 019384          291 LSFSRDGRLLAVASS  305 (342)
Q Consensus       291 v~~spdg~~las~s~  305 (342)
                      |+||||+.+||++|.
T Consensus       232 iaFSp~~s~LavsSd  246 (346)
T KOG2111|consen  232 IAFSPNSSWLAVSSD  246 (346)
T ss_pred             EEeCCCccEEEEEcC
Confidence            999999999998885

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=1.1e-11  Score=101.24  Aligned_cols=165  Identities=20%  Similarity=0.311  Sum_probs=115.4

Q ss_pred             CCCCCccCC-CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-------ee--eeeecCC-----ceEEEEEe-C
Q 019384            7 PPTSGRELG-NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-------LR--GEFMHGG-----PVLDCCFH-D   70 (342)
Q Consensus         7 ~~~~~~~~~-~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-------~~--~~~~h~~-----~V~~~~~~-~   70 (342)
                      ||-+.+-+. ..|...|+.++|.  .++|++| .||.|+=|......       +.  ....|.+     .|+++... .
T Consensus        49 ~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~  125 (325)
T KOG0649|consen   49 PPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS  125 (325)
T ss_pred             CCCCcceeeccccCCCeeeeeee--hhheeec-cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC
Confidence            344444444 5788999999998  3456655 56999999875321       10  0112332     36676665 4


Q ss_pred             CCCeEEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC--
Q 019384           71 DSSGFSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE--  147 (342)
Q Consensus        71 ~~~~~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~--  147 (342)
                      .+.++.|+.|+-+.-||+++++ .+.+++|++.|.++.--.....++||+.||++|+||++++..  ..++..+.++.  
T Consensus       126 enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~--v~~ie~yk~~~~l  203 (325)
T KOG0649|consen  126 ENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH--VSMIEPYKNPNLL  203 (325)
T ss_pred             CCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce--eEEeccccChhhc
Confidence            6678899999999999999998 467899999999998755567899999999999999986432  23343333221  


Q ss_pred             ------cEEEEeccCCeEEEEEcCCeEEEEeCCCCC
Q 019384          148 ------RVYSLSLVGNRLVVATAGRHVNVYDLRNMS  177 (342)
Q Consensus       148 ------~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~  177 (342)
                            -+.+++.+.+.++ |+.+..+.+|.++...
T Consensus       204 Rp~~g~wigala~~edWlv-CGgGp~lslwhLrsse  238 (325)
T KOG0649|consen  204 RPDWGKWIGALAVNEDWLV-CGGGPKLSLWHLRSSE  238 (325)
T ss_pred             CcccCceeEEEeccCceEE-ecCCCceeEEeccCCC
Confidence                  2455666666655 6667789999999764

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.47  E-value=2.1e-12  Score=109.24  Aligned_cols=196  Identities=16%  Similarity=0.239  Sum_probs=135.6

Q ss_pred             cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCC-cceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCC-
Q 019384          101 APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASG-QERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQ-  178 (342)
Q Consensus       101 ~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~-~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~-  178 (342)
                      .+|+|-+|++|.+.++.+-....|-|+....... +....+..+......+++++..+.|++++.|+.-.+|....+.. 
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W   90 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW   90 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence            6799999999999999999999999998664331 11122222222333344445567899999999999998854321 


Q ss_pred             cccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeE
Q 019384          179 PEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTF  258 (342)
Q Consensus       179 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l  258 (342)
                      ........++...+||.|+|..+.|++++....+.+.+|..+.+--..+     |.    ++.+...|.++.|||++-.|
T Consensus        91 kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK-----hi----kkPirStv~sldWhpnnVLl  161 (361)
T KOG1523|consen   91 KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK-----HI----KKPIRSTVTSLDWHPNNVLL  161 (361)
T ss_pred             ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh-----hh----CCccccceeeeeccCCccee
Confidence            0111112344567899999999999999999888887776543321111     11    11222368999999999999


Q ss_pred             EEecCCCeEEEEeC-----CC-------------ceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          259 ATGGCDGFVNVWDG-----NN-------------KKRLYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       259 ~sgs~Dg~I~iWd~-----~~-------------~~~~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                      +.||.|+.+||++.     +.             +..+.++....+.|..+.|||+|..||-.+-
T Consensus       162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H  226 (361)
T KOG1523|consen  162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH  226 (361)
T ss_pred             cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC
Confidence            99999999999973     11             1223344455679999999999999987764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.47  E-value=4.1e-12  Score=105.30  Aligned_cols=139  Identities=21%  Similarity=0.344  Sum_probs=90.8

Q ss_pred             eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384          167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV  246 (342)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v  246 (342)
                      ...+|.++....+...........+..++|+|++..+++........+.+||...   .....+.  .         .++
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---~~i~~~~--~---------~~~  103 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---KKIFSFG--T---------QPR  103 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---cEeEeec--C---------CCc
Confidence            3455555433333322222223358899999999998766433223567799841   1111111  1         157


Q ss_pred             eEEEEcCCCCeEEEecC---CCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEE
Q 019384          247 NAIAFHPIYGTFATGGC---DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVR  323 (342)
Q Consensus       247 ~~v~~sp~~~~l~sgs~---Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~  323 (342)
                      ++|.|+|+|++|++|+.   .|.|.+||.++.+.+.+.. |. .+..++|||||++|+++...-     +...-+++.+|
T Consensus       104 n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~-----r~~~dng~~Iw  176 (194)
T PF08662_consen  104 NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSP-----RLRVDNGFKIW  176 (194)
T ss_pred             eEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEecc-----ceeccccEEEE
Confidence            88999999999998864   4679999999888887764 33 478999999999999987641     12233477777


Q ss_pred             Ecc
Q 019384          324 SVN  326 (342)
Q Consensus       324 ~~~  326 (342)
                      ...
T Consensus       177 ~~~  179 (194)
T PF08662_consen  177 SFQ  179 (194)
T ss_pred             Eec
Confidence            664

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.45  E-value=1e-11  Score=107.63  Aligned_cols=258  Identities=18%  Similarity=0.205  Sum_probs=167.9

Q ss_pred             CCCeEEEEEcCCCC--eEEEEeCCCcEEEEECCCceeeeee-------ecCCceEEEEEeCCCCeEEEecCCcEEEEEec
Q 019384           19 SDGISNLRFSNHSD--HLLVSSWDKSVRLYDASANVLRGEF-------MHGGPVLDCCFHDDSSGFSASADHTVRRLVFS   89 (342)
Q Consensus        19 ~~~V~~l~fs~~~~--~l~s~s~Dgti~vwd~~~~~~~~~~-------~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~   89 (342)
                      ...|.+++|--+++  .|...+.|-.+..+......+....       ...++|.++... ++.+++|-.+|.+++|...
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DGTLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CCEEEEEecCCcEEEEecc
Confidence            45788888887653  4555557888888877665433321       234556555553 5678899999999999987


Q ss_pred             cCc-----eeecccCCcceeEEEEeCCC-CEEEEeeCC--CcEEEEcCCCCCCcceeeeeecCCC-------Cc--EEEE
Q 019384           90 HGK-----EDILGKHDAPVRCIEYSYAA-GQVITGSWD--KSLKCWDPRGASGQERTLVGTYPQP-------ER--VYSL  152 (342)
Q Consensus        90 ~~~-----~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D--~~I~iWd~~~~~~~~~~~~~~~~~~-------~~--v~~~  152 (342)
                      .+.     ...+. ....+..+.-++.. ..+++|+..  ..+++||++...+    ++..-..+       ..  +.++
T Consensus       134 ~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q----iw~aKNvpnD~L~LrVPvW~tdi  208 (412)
T KOG3881|consen  134 SGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ----IWSAKNVPNDRLGLRVPVWITDI  208 (412)
T ss_pred             CCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeeccccee----eeeccCCCCccccceeeeeeccc
Confidence            443     22222 22445555555544 356779999  8899999985421    22211111       11  1222


Q ss_pred             ec--c--CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccc
Q 019384          153 SL--V--GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKY  228 (342)
Q Consensus       153 s~--~--~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~  228 (342)
                      -|  .  ...|++++.-+.+|+||.+.++.|...... ....+.++...|+++.++++..-+.+.  .||.+....... 
T Consensus       209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~--~FD~r~~kl~g~-  284 (412)
T KOG3881|consen  209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGNFIYTGNTKGQLA--KFDLRGGKLLGC-  284 (412)
T ss_pred             eecCCCCCceEEEEecceeEEEecCcccCcceeEecc-ccCcceeeeecCCCcEEEEecccchhh--eecccCceeecc-
Confidence            22  2  347999999999999999987776544332 223467888899999999998777654  588864322111 


Q ss_pred             eeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCC
Q 019384          229 AFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRD  296 (342)
Q Consensus       229 ~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spd  296 (342)
                          -.+     +..+.|+++..||..++|++|+.|++|||+|+++.+++.... -...++++-+.++
T Consensus       285 ----~~k-----g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  285 ----GLK-----GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             ----ccC-----CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence                011     233579999999999999999999999999999977665432 1244566666554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=5.4e-11  Score=111.39  Aligned_cols=235  Identities=11%  Similarity=0.086  Sum_probs=146.1

Q ss_pred             CcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEecC---CcEEEEEeccCceeecccCCcceeEEEEeCCCCEEE
Q 019384           41 KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASAD---HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVI  116 (342)
Q Consensus        41 gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D---~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~  116 (342)
                      .+|.+||..+...+....+...+.+..|+|+++. +.++.+   ..+.+|++.++....+..+.....+.+|+||++.|+
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~  263 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA  263 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence            4799999877665555567778999999988764 445533   358889998877655555555556889999998774


Q ss_pred             -EeeCCC--cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc-CCe--EEEEeCCCCCCccccccccccee
Q 019384          117 -TGSWDK--SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA-GRH--VNVYDLRNMSQPEQRRESSLKYQ  190 (342)
Q Consensus       117 -sgs~D~--~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~-d~~--v~iwd~~~~~~~~~~~~~~~~~~  190 (342)
                       +.+.++  .|.+||+.++..   ..+...........++.+++.++..+. ++.  |.++|+.+++...  .... ...
T Consensus       264 ~~~s~~g~~~Iy~~d~~~g~~---~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~--lt~~-g~~  337 (433)
T PRK04922        264 LTLSRDGNPEIYVMDLGSRQL---TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER--LTFQ-GNY  337 (433)
T ss_pred             EEEeCCCCceEEEEECCCCCe---EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE--eecC-CCC
Confidence             555565  589999875432   122222112223467777777777664 333  6666765543211  1111 112


Q ss_pred             eEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC---Ce
Q 019384          191 TRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD---GF  266 (342)
Q Consensus       191 ~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D---g~  266 (342)
                      ....+++|+|+.++..+. ++...+++||..+.... .  +. +..         ......|+|||++|+..+.+   +.
T Consensus       338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~--Lt-~~~---------~~~~p~~spdG~~i~~~s~~~g~~~  404 (433)
T PRK04922        338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-T--LT-PGS---------LDESPSFAPNGSMVLYATREGGRGV  404 (433)
T ss_pred             ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-E--CC-CCC---------CCCCceECCCCCEEEEEEecCCceE
Confidence            235789999999877653 44556788987543211 1  11 100         12346899999988766553   35


Q ss_pred             EEEEeCCCceeeeccCCCCcceEEEEECC
Q 019384          267 VNVWDGNNKKRLYQYSKYPTSIAALSFSR  295 (342)
Q Consensus       267 I~iWd~~~~~~~~~~~~~~~~V~~v~~sp  295 (342)
                      |.+++... .....+..+.+.+...+|||
T Consensus       405 L~~~~~~g-~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        405 LAAVSTDG-RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EEEEECCC-CceEEcccCCCCCCCCccCC
Confidence            88888754 34455555566778888887

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=2.1e-11  Score=105.74  Aligned_cols=245  Identities=13%  Similarity=0.119  Sum_probs=165.1

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCC---ceEEEEEeC-CCCeEEEecCCcEEEEEeccC
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGG---PVLDCCFHD-DSSGFSASADHTVRRLVFSHG   91 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~---~V~~~~~~~-~~~~~s~s~D~~i~~w~~~~~   91 (342)
                      ++|...|++|+|....+.|.+|+.|++|.+.|+.+...+....|.+   .|+.+..+| +..+++.+.++.+.+||....
T Consensus       102 ~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~  181 (609)
T KOG4227|consen  102 HPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR  181 (609)
T ss_pred             CccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence            4566899999999999999999999999999998877777777765   899999875 666778899999999998655


Q ss_pred             c----eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCccee--eeeecCCCC---cEEEEeccCCeEEE
Q 019384           92 K----EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERT--LVGTYPQPE---RVYSLSLVGNRLVV  161 (342)
Q Consensus        92 ~----~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~--~~~~~~~~~---~v~~~s~~~~~~~~  161 (342)
                      .    ...+..-.....++.|+|.. .+|++.+.-+.+.+||.+........  .........   -..-++.+++.+++
T Consensus       182 ~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ms  261 (609)
T KOG4227|consen  182 QNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMS  261 (609)
T ss_pred             CCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehh
Confidence            4    22334455678889999966 56788888899999998753221100  001111111   12246667777776


Q ss_pred             EEcCCeEEEEeCCCCCCcccccccccce--e---eEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccc---------
Q 019384          162 ATAGRHVNVYDLRNMSQPEQRRESSLKY--Q---TRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK---------  227 (342)
Q Consensus       162 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~--~---~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~---------  227 (342)
                      .-....=.+||+.....+..+..+...+  .   +.++ ++.+...+++|+.+-.+  ++|-+.......-         
T Consensus       262 iRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~-~F~~D~~v~tGSD~~~i--~~WklP~~~ds~G~~~IG~~~~  338 (609)
T KOG4227|consen  262 IRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSM-TFIDDYTVATGSDHWGI--HIWKLPRANDSYGFTQIGHDEE  338 (609)
T ss_pred             hhccCCCEEeeeecccceeEeccCCCCcceeeeeeeee-eeecceeeeccCcccce--EEEecCCCccccCccccCcchh
Confidence            6666666778887755554444322211  1   1122 33444557777776544  5576533211111         


Q ss_pred             ------------ceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeC
Q 019384          228 ------------YAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDG  272 (342)
Q Consensus       228 ------------~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~  272 (342)
                                  ..+++|+.         .++.|.|+|...+|++.+....++||.-
T Consensus       339 ~~~~~~~i~~~~~VLrGHRS---------v~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  339 EMPSEIFIEKELTVLRGHRS---------VPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             hCchhheecceeEEEecccc---------cccceeecCCcceEeccchhhheecccc
Confidence                        12334443         4788999999999999999999999963

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=1.2e-10  Score=109.14  Aligned_cols=234  Identities=15%  Similarity=0.115  Sum_probs=146.4

Q ss_pred             CcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEec---CCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEE
Q 019384           41 KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASA---DHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVI  116 (342)
Q Consensus        41 gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~---D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~  116 (342)
                      ..|.++|..+...+....|...+....|+|+++. +..+.   +..|.+|++.++....+..+...+.+.+|+|||+.|+
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  261 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV  261 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence            4788888877666655668889999999988764 34442   4579999998887666666777788899999998774


Q ss_pred             -EeeCCCc--EEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC-C--eEEEEeCCCCCCccccccccccee
Q 019384          117 -TGSWDKS--LKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG-R--HVNVYDLRNMSQPEQRRESSLKYQ  190 (342)
Q Consensus       117 -sgs~D~~--I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d-~--~v~iwd~~~~~~~~~~~~~~~~~~  190 (342)
                       +.+.++.  |.+||++++..   ..+...........++.+++.++..+.. +  .|.++|+......  .... ....
T Consensus       262 ~~~~~~g~~~Iy~~d~~~~~~---~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~--~lt~-~~~~  335 (435)
T PRK05137        262 MSLSQGGNTDIYTMDLRSGTT---TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR--RISF-GGGR  335 (435)
T ss_pred             EEEecCCCceEEEEECCCCce---EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE--Eeec-CCCc
Confidence             6666665  66778765322   1222222222334677788888776643 3  5777887654221  1111 1122


Q ss_pred             eEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC-----
Q 019384          191 TRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD-----  264 (342)
Q Consensus       191 ~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D-----  264 (342)
                      .....|+|+|+.++.... .+...+.++|..... .+.  +..      +    ..+....|+|||++|+..+.+     
T Consensus       336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~--lt~------~----~~~~~p~~spDG~~i~~~~~~~~~~~  402 (435)
T PRK05137        336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERI--LTS------G----FLVEGPTWAPNGRVIMFFRQTPGSGG  402 (435)
T ss_pred             ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEe--ccC------C----CCCCCCeECCCCCEEEEEEccCCCCC
Confidence            345679999999877654 344567778864321 111  110      0    124567899999988664432     


Q ss_pred             -CeEEEEeCCCceeeeccCCCCcceEEEEECC
Q 019384          265 -GFVNVWDGNNKKRLYQYSKYPTSIAALSFSR  295 (342)
Q Consensus       265 -g~I~iWd~~~~~~~~~~~~~~~~V~~v~~sp  295 (342)
                       ..++++|+..+.. ..+. ..+.+...+|||
T Consensus       403 ~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        403 APKLYTVDLTGRNE-REVP-TPGDASDPAWSP  432 (435)
T ss_pred             cceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence             2577778765433 3443 234567777776

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=4e-12  Score=114.47  Aligned_cols=118  Identities=19%  Similarity=0.124  Sum_probs=86.2

Q ss_pred             eecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCcee--ecccCCcceeEEEEeCC--CCEEEEeeCCCcEEEEcCCC
Q 019384           57 FMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKED--ILGKHDAPVRCIEYSYA--AGQVITGSWDKSLKCWDPRG  131 (342)
Q Consensus        57 ~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~~--~~~~h~~~V~~~~~~~~--~~~l~sgs~D~~I~iWd~~~  131 (342)
                      .+|+|-|+++.|..++.+ ++||.|..+.+||.-..+..  +-.+|+..|.|+.|-|.  +.+++||+.|..|+++|+..
T Consensus        47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence            479999999999866665 68999999999998765533  33789999999999994  46789999999999999874


Q ss_pred             CCC--c------ceeeeeecCCCCcEE--EEec-cCCeEEEEEcCCeEEEEeCCCC
Q 019384          132 ASG--Q------ERTLVGTYPQPERVY--SLSL-VGNRLVVATAGRHVNVYDLRNM  176 (342)
Q Consensus       132 ~~~--~------~~~~~~~~~~~~~v~--~~s~-~~~~~~~~s~d~~v~iwd~~~~  176 (342)
                      ...  .      .......  +..++-  ..+. .++.+.+++.||+++.+|+|..
T Consensus       127 ~~~~~~d~~~~~~~~~~~c--ht~rVKria~~p~~PhtfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  127 SKEGGMDHGMEETTRCWSC--HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             ccccccccCccchhhhhhh--hhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence            211  0      0001111  122222  2333 3578999999999999999874

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.41  E-value=5.6e-10  Score=94.65  Aligned_cols=239  Identities=15%  Similarity=0.220  Sum_probs=147.1

Q ss_pred             CeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee-cCCc--eEEEEEeCCCCeEEEecC------CcEEEEEeccC
Q 019384           21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGP--VLDCCFHDDSSGFSASAD------HTVRRLVFSHG   91 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~-h~~~--V~~~~~~~~~~~~s~s~D------~~i~~w~~~~~   91 (342)
                      ...+++|+.|..-++.| .|.=.|||+++=-+...... +.+.  +.-+.|-.+=..+.|+.+      ..+.+||-...
T Consensus         7 ~~lsvs~NQD~ScFava-~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVA-TDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEE-ecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            34569999887666655 45558999985311111111 1111  112222111122345544      36889995544


Q ss_pred             ceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEE---EcCCeE
Q 019384           92 KEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVA---TAGRHV  168 (342)
Q Consensus        92 ~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~---s~d~~v  168 (342)
                      ++..--....+|.++.+.+  ++|+.. .+++|.+|.....-+ ....+.....+...+++++..+.-+.+   ..-|.|
T Consensus        86 ~~i~el~f~~~I~~V~l~r--~riVvv-l~~~I~VytF~~n~k-~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv  161 (346)
T KOG2111|consen   86 RCIIELSFNSEIKAVKLRR--DRIVVV-LENKIYVYTFPDNPK-LLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV  161 (346)
T ss_pred             cEEEEEEeccceeeEEEcC--CeEEEE-ecCeEEEEEcCCChh-heeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence            4433344567899999876  345544 578999998753222 122333334455666777654433333   333789


Q ss_pred             EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384          169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA  248 (342)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  248 (342)
                      ++-|+............++...+.|++..-+|..+|++|..|++ |++||..+.....+  ++  +    |.+. ..|.+
T Consensus       162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTL-IRIFdt~~g~~l~E--~R--R----G~d~-A~iy~  231 (346)
T KOG2111|consen  162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTL-IRIFDTEDGTLLQE--LR--R----GVDR-ADIYC  231 (346)
T ss_pred             EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEE-EEEEEcCCCcEeee--ee--c----CCch-heEEE
Confidence            99999765431112223455678999999999999999999995 68999876543322  22  1    1111 14899


Q ss_pred             EEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384          249 IAFHPIYGTFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       249 v~~sp~~~~l~sgs~Dg~I~iWd~~~  274 (342)
                      ++|||+..+||.+|.-||++|+.++.
T Consensus       232 iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  232 IAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEeCCCccEEEEEcCCCeEEEEEeec
Confidence            99999999999999999999998764

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=4.8e-11  Score=111.41  Aligned_cols=237  Identities=12%  Similarity=0.115  Sum_probs=141.6

Q ss_pred             CcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EEecC---CcEEEEEeccCceeecccCCcceeEEEEeCCCCEEE
Q 019384           41 KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SASAD---HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVI  116 (342)
Q Consensus        41 gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s~D---~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~  116 (342)
                      ..|.++|..+...+....+.+.+.+.+|+|+++.+ ..+.+   ..|.+|++.+++...+......+.+.+|+||++.|+
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  255 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA  255 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            46777777655555555678889999999887654 44432   348889998877555544445567899999998875


Q ss_pred             -EeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc-CCeEEEEeCC--CCCCcccccccccceeeE
Q 019384          117 -TGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA-GRHVNVYDLR--NMSQPEQRRESSLKYQTR  192 (342)
Q Consensus       117 -sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~-d~~v~iwd~~--~~~~~~~~~~~~~~~~~~  192 (342)
                       +.+.|+...||.++...+.. ..+...........++.+++.++..+. ++...+|.+.  .+..  ...... .....
T Consensus       256 ~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~--~~lt~~-g~~~~  331 (427)
T PRK02889        256 VALSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA--QRVTFT-GSYNT  331 (427)
T ss_pred             EEEccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce--EEEecC-CCCcC
Confidence             67778877777543222211 122222212223457778887776654 3556666543  3221  111111 11123


Q ss_pred             EEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCC---eEE
Q 019384          193 CVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDG---FVN  268 (342)
Q Consensus       193 ~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg---~I~  268 (342)
                      ..+++|+|+.++..+. ++...+++||....... .  +... .         ......|+|||++|+.++.++   .++
T Consensus       332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~--lt~~-~---------~~~~p~~spdg~~l~~~~~~~g~~~l~  398 (427)
T PRK02889        332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-A--LTDT-T---------RDESPSFAPNGRYILYATQQGGRSVLA  398 (427)
T ss_pred             ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-E--ccCC-C---------CccCceECCCCCEEEEEEecCCCEEEE
Confidence            4578999999876654 34456788887543211 1  1100 0         124568999999987776544   355


Q ss_pred             EEeCCCceeeeccCCCCcceEEEEECC
Q 019384          269 VWDGNNKKRLYQYSKYPTSIAALSFSR  295 (342)
Q Consensus       269 iWd~~~~~~~~~~~~~~~~V~~v~~sp  295 (342)
                      +.+. ++...+.+..+.+.+...+|||
T Consensus       399 ~~~~-~g~~~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        399 AVSS-DGRIKQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             EEEC-CCCceEEeecCCCCCCCCccCC
Confidence            5555 3444555555667788888887

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=4.8e-11  Score=108.17  Aligned_cols=241  Identities=17%  Similarity=0.278  Sum_probs=160.5

Q ss_pred             CCCCCeEEEEEcCCCCeE-EEEeCCCcEEEEECCCceeeeee-----------------------------ecCC-----
Q 019384           17 PPSDGISNLRFSNHSDHL-LVSSWDKSVRLYDASANVLRGEF-----------------------------MHGG-----   61 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l-~s~s~Dgti~vwd~~~~~~~~~~-----------------------------~h~~-----   61 (342)
                      +++..-+.|..+|||+++ |||-+-=.|++||+..-.+.-+.                             .|..     
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            456677889999999985 57778899999998642211000                             1211     


Q ss_pred             ------ceEEEEEe-CCCCeEEEecCCcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCC
Q 019384           62 ------PVLDCCFH-DDSSGFSASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS  133 (342)
Q Consensus        62 ------~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~  133 (342)
                            .-.+++++ +..-++.++....|..+++++++. ..+......+++|..++-.++|++|+.||.+..||.+...
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks  208 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS  208 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence                  11334443 444567777777888888888873 3455566889999999988999999999999999987532


Q ss_pred             Ccceeeeee------cC---CCCcEEEEeccCC--eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce
Q 019384          134 GQERTLVGT------YP---QPERVYSLSLVGN--RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG  202 (342)
Q Consensus       134 ~~~~~~~~~------~~---~~~~v~~~s~~~~--~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  202 (342)
                      ..  ..+..      +.   ....+.++.+..+  .+++|+..|.+.|||+|.. .+.....+.-...+..+.|.+.++.
T Consensus       209 rv--~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~-~pl~~kdh~~e~pi~~l~~~~~~~q  285 (703)
T KOG2321|consen  209 RV--GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS-KPLLVKDHGYELPIKKLDWQDTDQQ  285 (703)
T ss_pred             hh--eeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC-CceeecccCCccceeeecccccCCC
Confidence            21  11111      11   1123667777553  7889999999999999985 3444444444456777778776555


Q ss_pred             EEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          203 YALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       203 ~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      -.+.+.|..+ +++||-.+.+.--  .+          .....++.+|+-|++.++.++-++..+..|=+.
T Consensus       286 ~~v~S~Dk~~-~kiWd~~~Gk~~a--si----------Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  286 NKVVSMDKRI-LKIWDECTGKPMA--SI----------EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             ceEEecchHH-hhhcccccCCcee--ec----------cccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence            4555556553 5789875442210  00          111248889999999999999998877776543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=9.7e-11  Score=100.82  Aligned_cols=186  Identities=16%  Similarity=0.137  Sum_probs=121.8

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee--ecCCceEEEEEeCC-CCeEEEecCCcEEEEEeccCc
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF--MHGGPVLDCCFHDD-SSGFSASADHTVRRLVFSHGK   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~--~h~~~V~~~~~~~~-~~~~s~s~D~~i~~w~~~~~~   92 (342)
                      +-.+..+.-++|.++-..+|++..|-+||+||-+... ...+  .-+..|.+++|-|. .+.++.+.-+-|.+|..+..-
T Consensus        95 ~ws~~dlr~~aWhqH~~~fava~nddvVriy~ksst~-pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tl  173 (445)
T KOG2139|consen   95 LWSEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC-PTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTL  173 (445)
T ss_pred             hhhhcceeeEeechhhhhhhhhccCcEEEEeccCCCC-CceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccc
Confidence            3345678899999988889999999999999987632 2222  23567999999753 334555555667899764321


Q ss_pred             -----ee--------ec--ccCCcceeEEEEeCCCCEEEEeeCC-CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC
Q 019384           93 -----ED--------IL--GKHDAPVRCIEYSYAAGQVITGSWD-KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG  156 (342)
Q Consensus        93 -----~~--------~~--~~h~~~V~~~~~~~~~~~l~sgs~D-~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~  156 (342)
                           .+        ++  .+| .+|+++.|.+||..++++|.+ ..|+|||..++.+......  -........+++++
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--glgg~slLkwSPdg  250 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--GLGGFSLLKWSPDG  250 (445)
T ss_pred             ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--CCCceeeEEEcCCC
Confidence                 11        11  244 689999999999999998766 5799999987655322111  11223356788889


Q ss_pred             CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc
Q 019384          157 NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS  207 (342)
Q Consensus       157 ~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s  207 (342)
                      +.++.++-|+..++|+....-.......  ....+..-.|+|+|..++...
T Consensus       251 d~lfaAt~davfrlw~e~q~wt~erw~l--gsgrvqtacWspcGsfLLf~~  299 (445)
T KOG2139|consen  251 DVLFAATCDAVFRLWQENQSWTKERWIL--GSGRVQTACWSPCGSFLLFAC  299 (445)
T ss_pred             CEEEEecccceeeeehhcccceecceec--cCCceeeeeecCCCCEEEEEE
Confidence            9999999999999996543211111100  112334445778777665443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.38  E-value=1.6e-11  Score=104.35  Aligned_cols=221  Identities=15%  Similarity=0.158  Sum_probs=136.0

Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-E-EEecCCcEEEEEeccCce-eecccCC
Q 019384           24 NLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-F-SASADHTVRRLVFSHGKE-DILGKHD  100 (342)
Q Consensus        24 ~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~-s~s~D~~i~~w~~~~~~~-~~~~~h~  100 (342)
                      -.+|||+|+++|+++.- .+-|-|..+-.+...+..-+.|.-+.|..+... + .+..|+.|++|++.+.+. -.+....
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~   91 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ   91 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence            35899999999998765 677777766544444444456667788755543 3 456788999999988874 3455566


Q ss_pred             cceeEEEEeCCCC-EEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCc
Q 019384          101 APVRCIEYSYAAG-QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQP  179 (342)
Q Consensus       101 ~~V~~~~~~~~~~-~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~  179 (342)
                      ..+.++.|+|||+ .|.+...|-.|.+|.+.+..+.   .+...+...+.+++..++...+.++.-...-.+.+..-+.=
T Consensus        92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~---~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W  168 (447)
T KOG4497|consen   92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY---LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW  168 (447)
T ss_pred             CcceeeeECCCcceEeeeecceeEEEEEEeccceeE---EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence            7899999999995 5678889999999998764331   22223333456667767766555544311111111000000


Q ss_pred             cccccccc-ceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeE
Q 019384          180 EQRRESSL-KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTF  258 (342)
Q Consensus       180 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l  258 (342)
                      +....-.+ ....+.+.|+|||..+++           ||.--.....    ..|...        .+-.++|+|-+++|
T Consensus       169 ~ll~~f~~dT~DltgieWsPdg~~laV-----------wd~~Leykv~----aYe~~l--------G~k~v~wsP~~qfl  225 (447)
T KOG4497|consen  169 ILLKEFKLDTIDLTGIEWSPDGNWLAV-----------WDNVLEYKVY----AYERGL--------GLKFVEWSPCNQFL  225 (447)
T ss_pred             HHHHhcCCCcccccCceECCCCcEEEE-----------ecchhhheee----eeeecc--------ceeEEEeccccceE
Confidence            00000011 112456779999886653           5532111111    112211        37789999999999


Q ss_pred             EEecCCCeEEEEe
Q 019384          259 ATGGCDGFVNVWD  271 (342)
Q Consensus       259 ~sgs~Dg~I~iWd  271 (342)
                      +.|+.|+.+||-+
T Consensus       226 avGsyD~~lrvln  238 (447)
T KOG4497|consen  226 AVGSYDQMLRVLN  238 (447)
T ss_pred             Eeeccchhhhhhc
Confidence            9999999998854

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=2.1e-10  Score=107.55  Aligned_cols=205  Identities=13%  Similarity=0.122  Sum_probs=129.0

Q ss_pred             cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeC---CCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCe
Q 019384           82 TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSW---DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR  158 (342)
Q Consensus        82 ~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~---D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~  158 (342)
                      .|.++|.+......+..|...+.+.+|+||++.|+..+.   +..|.+||++++..   ..+...........++++++.
T Consensus       183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---~~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---ELVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---EEeecCCCcccCcEECCCCCE
Confidence            566777766666667788889999999999998877654   35899999975432   223222222233467778877


Q ss_pred             EE-EEEcCCe--EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEE
Q 019384          159 LV-VATAGRH--VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHR  234 (342)
Q Consensus       159 ~~-~~s~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~  234 (342)
                      ++ +.+.++.  |.+||+.++...  ... ..........|+|+++.++..+ .++...++++|...... +.  +..+.
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~--~Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~--lt~~~  333 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTT--RLT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RR--ISFGG  333 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceE--Ecc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EE--eecCC
Confidence            65 4444544  777788765321  111 1122234578999999887766 34555677888643221 11  11110


Q ss_pred             ecCCCCceeeeeeEEEEcCCCCeEEEecCC---CeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCD---GFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D---g~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                               ..+....|+|+|+.|+..+.+   ..|.+||...+.. ..+. ....+..++|||||++|+..+..
T Consensus       334 ---------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        334 ---------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             ---------CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence                     124567899999998776533   3688888765432 2232 22357789999999998876653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.36  E-value=9.3e-12  Score=111.89  Aligned_cols=185  Identities=17%  Similarity=0.233  Sum_probs=121.5

Q ss_pred             CCCCEEEEeeCCCcEEEEcCCCCCCcceeeeee--cCCCCcEEEEec---cCCeEEEEEcCCeEEEEeCCCCCCcccccc
Q 019384          110 YAAGQVITGSWDKSLKCWDPRGASGQERTLVGT--YPQPERVYSLSL---VGNRLVVATAGRHVNVYDLRNMSQPEQRRE  184 (342)
Q Consensus       110 ~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~--~~~~~~v~~~s~---~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~  184 (342)
                      +++--++.|-.-|.+.+.|....+  ....+..  .-....+.++.+   +...++.+-.++.+.++|.... ...    
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~--~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-~~~----  255 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFE--VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-CGA----  255 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhH--HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-ccC----
Confidence            345557778888888888865311  1111110  111233455544   3457888899999999987431 000    


Q ss_pred             cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC
Q 019384          185 SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD  264 (342)
Q Consensus       185 ~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D  264 (342)
                           ...+....+++..+.+.......        +......|.+-           ..+|+..+|+|||++||+-|.|
T Consensus       256 -----t~p~~~~~k~~~~f~i~t~ksk~--------~rNPv~~w~~~-----------~g~in~f~FS~DG~~LA~VSqD  311 (636)
T KOG2394|consen  256 -----TAPSYQALKDGDQFAILTSKSKK--------TRNPVARWHIG-----------EGSINEFAFSPDGKYLATVSQD  311 (636)
T ss_pred             -----CCCcccccCCCCeeEEeeeeccc--------cCCccceeEec-----------cccccceeEcCCCceEEEEecC
Confidence                 01122234455545443321110        01112222221           1268999999999999999999


Q ss_pred             CeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccCCccccCCCC
Q 019384          265 GFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIEVKPKPKA  336 (342)
Q Consensus       265 g~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (342)
                      |.+||+|..+.+++..++.+-+...|++|||||+||++|+.+|           .+-||+..|.-|+-|+..
T Consensus       312 GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-----------LVtVwSf~erRVVARGqG  372 (636)
T KOG2394|consen  312 GFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-----------LVTVWSFEERRVVARGQG  372 (636)
T ss_pred             ceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-----------eEEEEEeccceEEEeccc
Confidence            9999999999888887777788899999999999999999888           788899999999988764

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=2e-10  Score=107.56  Aligned_cols=205  Identities=15%  Similarity=0.101  Sum_probs=129.3

Q ss_pred             cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCC---CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCe
Q 019384           82 TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWD---KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR  158 (342)
Q Consensus        82 ~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D---~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~  158 (342)
                      .|.+||.+......+..|...+.+.+|+||++.|+..+.+   ..|.+||+.++..   ..+...........++.+++.
T Consensus       185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~---~~l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR---ELVASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE---EEeccCCCCccCceECCCCCE
Confidence            4777887666556666777889999999999998877654   3699999875432   122222222233467777876


Q ss_pred             EEE-EEcCC--eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEE
Q 019384          159 LVV-ATAGR--HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHR  234 (342)
Q Consensus       159 ~~~-~s~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~  234 (342)
                      ++. .+.++  .|.+||+.++....  .. .........+|+|+++.++..+. ++...++.+|...... .......  
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~~~--lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g--  335 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQLTR--LT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQG--  335 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCeEE--Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCC--
Confidence            654 44454  58999998764221  11 11112345789999998877663 4555677777643321 1111110  


Q ss_pred             ecCCCCceeeeeeEEEEcCCCCeEEEecCCC---eEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCDG---FVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg---~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                               ......+|+|+|+.|+..+.++   .|.+||..+++.. .+. +.......+|+|||++|+..+..
T Consensus       336 ---------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        336 ---------NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             ---------CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec
Confidence                     0133579999999987654332   6999999876543 333 22245678999999998877654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=1.6e-10  Score=107.97  Aligned_cols=206  Identities=14%  Similarity=0.075  Sum_probs=123.7

Q ss_pred             cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCC---CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCe
Q 019384           82 TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWD---KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR  158 (342)
Q Consensus        82 ~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D---~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~  158 (342)
                      .+.++|.+......+..+...+.+.+|+||++.|+..+.+   ..|.+||++++..   ..+...........++++++.
T Consensus       177 ~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~---~~l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        177 QLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR---RVVANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             EEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE---EEeecCCCCccceEECCCCCE
Confidence            3445555444444555677889999999999988776643   3599999975432   122222222334567778877


Q ss_pred             EEE-EEcCCeEEEEe--CCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEE
Q 019384          159 LVV-ATAGRHVNVYD--LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHR  234 (342)
Q Consensus       159 ~~~-~s~d~~v~iwd--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~  234 (342)
                      ++. .+.++...||.  +....  ...... .........|+|+|+.++..+. ++...++.++..... ........  
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~--~~~lt~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~g--  327 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG--LRRLTQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTFTG--  327 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC--cEECCC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEecCC--
Confidence            764 56667666665  44332  111111 1122345679999998876654 455566556543221 11111110  


Q ss_pred             ecCCCCceeeeeeEEEEcCCCCeEEEecCCC---eEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCDG---FVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg---~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                           .    .....+|+|+|++|+..+.++   .|++||..+++.. .+... ......+|+|||++|+.++...
T Consensus       328 -----~----~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        328 -----S----YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             -----C----CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecC
Confidence                 0    123468999999988766544   6999999876543 23322 2346889999999998877543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.32  E-value=5.8e-10  Score=109.24  Aligned_cols=224  Identities=16%  Similarity=0.155  Sum_probs=141.8

Q ss_pred             EECCCceeeeeeecCCceEEEEEe-CC-CCeEEEecCCcEEEEEeccCc--------eeecccCCcceeEEEEeCCCCEE
Q 019384           46 YDASANVLRGEFMHGGPVLDCCFH-DD-SSGFSASADHTVRRLVFSHGK--------EDILGKHDAPVRCIEYSYAAGQV  115 (342)
Q Consensus        46 wd~~~~~~~~~~~h~~~V~~~~~~-~~-~~~~s~s~D~~i~~w~~~~~~--------~~~~~~h~~~V~~~~~~~~~~~l  115 (342)
                      |+..+-..-+...|+..|..++.+ +. ..++|||.||+|++|+...-.        +.++.--+..+.++.+.+.++.+
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence            444433333445688888888887 44 345799999999999986432        11233346778899999999999


Q ss_pred             EEeeCCCcEEEEcCCCCCCcceee--e--eecCCCCcEEEEec----cCC-eEEEEEcCCeEEEEeCCCCCCcccccccc
Q 019384          116 ITGSWDKSLKCWDPRGASGQERTL--V--GTYPQPERVYSLSL----VGN-RLVVATAGRHVNVYDLRNMSQPEQRRESS  186 (342)
Q Consensus       116 ~sgs~D~~I~iWd~~~~~~~~~~~--~--~~~~~~~~v~~~s~----~~~-~~~~~s~d~~v~iwd~~~~~~~~~~~~~~  186 (342)
                      |.++.||.|++.+++.........  .  ........++.+-.    ... .++.++.-+.|..||.+............
T Consensus      1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred             EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence            999999999999876411110000  0  11111222333321    122 56777888899999998754332222222


Q ss_pred             cceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC---CeEEE-ec
Q 019384          187 LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY---GTFAT-GG  262 (342)
Q Consensus       187 ~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~---~~l~s-gs  262 (342)
                      -.+.+++++.+|.+..+++|+..|.+  .+||++-......|.+..+.          +++-|..+|-.   ...++ ++
T Consensus      1194 ~hG~vTSi~idp~~~WlviGts~G~l--~lWDLRF~~~i~sw~~P~~~----------~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQL--VLWDLRFRVPILSWEHPARA----------PIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred             cccceeEEEecCCceEEEEecCCceE--EEEEeecCceeecccCcccC----------CcceEEeeccCCCCceEEEecc
Confidence            23457889999999999999999875  46999765555555444331          45555555432   34444 44


Q ss_pred             -CCCeEEEEeCCCceeeecc
Q 019384          263 -CDGFVNVWDGNNKKRLYQY  281 (342)
Q Consensus       263 -~Dg~I~iWd~~~~~~~~~~  281 (342)
                       ..+.|.+|+.+++.+-+.+
T Consensus      1262 ~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred             cCCCceeeeecccCcceEEE
Confidence             5778999999987554433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.32  E-value=1.1e-08  Score=93.26  Aligned_cols=288  Identities=16%  Similarity=0.066  Sum_probs=149.3

Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EE-ecCCcEEEEEeccCcee-ecc--
Q 019384           23 SNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SA-SADHTVRRLVFSHGKED-ILG--   97 (342)
Q Consensus        23 ~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~-s~D~~i~~w~~~~~~~~-~~~--   97 (342)
                      ..+.|+|||+++.+++.||.|.++|+.+.+...++.-.....+++++++++.+ .+ -.++.+.++|.++.+.. .+.  
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~  119 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG  119 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence            34789999999999999999999999998888777777788899999887754 33 46889999998876632 221  


Q ss_pred             -----cCCcceeEEEEeCCCCEEEEeeCC-CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEE-EEcCCeEEE
Q 019384           98 -----KHDAPVRCIEYSYAAGQVITGSWD-KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVV-ATAGRHVNV  170 (342)
Q Consensus        98 -----~h~~~V~~~~~~~~~~~l~sgs~D-~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~-~s~d~~v~i  170 (342)
                           .....+..+-.++....++..-.| +.|-+-|...........+.. ...-.-..++.++.+++. +..++.|-+
T Consensus       120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~-g~~~~D~~~dpdgry~~va~~~sn~i~v  198 (369)
T PF02239_consen  120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV-GRFPHDGGFDPDGRYFLVAANGSNKIAV  198 (369)
T ss_dssp             EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEE
T ss_pred             cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc-cccccccccCcccceeeecccccceeEE
Confidence                 133467777777877766655555 667666765432211111111 111112345556665554 466678999


Q ss_pred             EeCCCCCCccccccc--ccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhh--hcccceeeeEEecCCCCceeeee
Q 019384          171 YDLRNMSQPEQRRES--SLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAS--QAKKYAFKCHRKSEAGRDIVYPV  246 (342)
Q Consensus       171 wd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~--~~~~~~~~~h~~~~~~~~~~~~v  246 (342)
                      +|..+..........  ..+.....+ .+|....+......+...+-......-.  ....|......+.. +    .+ 
T Consensus       199 iD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~-G----~g-  271 (369)
T PF02239_consen  199 IDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ-G----GG-  271 (369)
T ss_dssp             EETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S-S----SS-
T ss_pred             EeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC-C----Cc-
Confidence            998875432211100  011111111 2343322222222121111111111000  00111111111110 1    12 


Q ss_pred             eEEEEcCCCCeEEEe----cCCCeEEEEeCCCceeeeccCCC-CcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEE
Q 019384          247 NAIAFHPIYGTFATG----GCDGFVNVWDGNNKKRLYQYSKY-PTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIF  321 (342)
Q Consensus       247 ~~v~~sp~~~~l~sg----s~Dg~I~iWd~~~~~~~~~~~~~-~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~  321 (342)
                      .-+.-||++++|+..    ...++|.++|.++.+.+.++... ...+..++|++||+++-.+..+.   ..      .|+
T Consensus       272 lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~---~~------~i~  342 (369)
T PF02239_consen  272 LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG---NG------AIV  342 (369)
T ss_dssp             --EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE-----TT------EEE
T ss_pred             ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC---CC------EEE
Confidence            346779999999887    45689999999998777666422 23589999999999877654322   21      477


Q ss_pred             EEEccC
Q 019384          322 VRSVNE  327 (342)
Q Consensus       322 ~~~~~~  327 (342)
                      ++.-..
T Consensus       343 v~D~~T  348 (369)
T PF02239_consen  343 VYDAKT  348 (369)
T ss_dssp             EEETTT
T ss_pred             EEECCC
Confidence            776553

...

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.29  E-value=8e-10  Score=94.16  Aligned_cols=266  Identities=14%  Similarity=0.127  Sum_probs=154.7

Q ss_pred             CCCCCeEEEEEcCCCCe-EEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEec--CC------------
Q 019384           17 PPSDGISNLRFSNHSDH-LLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASA--DH------------   81 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~-l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~--D~------------   81 (342)
                      +..+++.+++|||||++ |.+...|-.|.||.+.+.+.....-.+..+..++|.++++..+-..  |.            
T Consensus        89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W  168 (447)
T KOG4497|consen   89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW  168 (447)
T ss_pred             cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence            34678999999999965 5577899999999998765433322334557778877776543221  11            


Q ss_pred             -----------------------cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCccee
Q 019384           82 -----------------------TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERT  138 (342)
Q Consensus        82 -----------------------~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~  138 (342)
                                             .+.+||.--.........+-.+..++|+|-++.|+.|+.|+.+|+.+--+=     .
T Consensus       169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW-----k  243 (447)
T KOG4497|consen  169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW-----K  243 (447)
T ss_pred             HHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeee-----e
Confidence                                   111222111000011223356889999999999999999999998552110     0


Q ss_pred             eeeecCC------C---------Cc-----EEEEeccCCeEEEEEcCCeEEEEeCC-------CCCCccccccc-----c
Q 019384          139 LVGTYPQ------P---------ER-----VYSLSLVGNRLVVATAGRHVNVYDLR-------NMSQPEQRRES-----S  186 (342)
Q Consensus       139 ~~~~~~~------~---------~~-----v~~~s~~~~~~~~~s~d~~v~iwd~~-------~~~~~~~~~~~-----~  186 (342)
                      .++.+.+      +         ..     .-++++.+..       -...+|...       ..-.......+     .
T Consensus       244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~-------~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pn  316 (447)
T KOG4497|consen  244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD-------LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPN  316 (447)
T ss_pred             ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCc-------cccCccccchhhhhhhhcceeeecccCCCCCCC
Confidence            0110000      0         00     0122222211       011222211       10000011110     0


Q ss_pred             cceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCe
Q 019384          187 LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGF  266 (342)
Q Consensus       187 ~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~  266 (342)
                      ....+-.++|++|..++++....--..+|+||+..-.   ..+.-. +        .++|.+..|+|....|+.+.....
T Consensus       317 Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~---l~avLi-Q--------k~piraf~WdP~~prL~vctg~sr  384 (447)
T KOG4497|consen  317 PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK---LHAVLI-Q--------KHPIRAFEWDPGRPRLVVCTGKSR  384 (447)
T ss_pred             cccccceeeecCCceEEeeecCCCCceEEEEechhhh---hhhhhh-h--------ccceeEEEeCCCCceEEEEcCCce
Confidence            1122345789999998888877766788999985321   111110 0        127999999999888888777778


Q ss_pred             EEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          267 VNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       267 I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      +++|.......+.. .+-.-.|..+.|..+|..++..+.+-
T Consensus       385 LY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  385 LYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             EEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCc
Confidence            99998776554443 33335799999999999999887654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.29  E-value=8.8e-12  Score=117.24  Aligned_cols=226  Identities=13%  Similarity=0.144  Sum_probs=150.0

Q ss_pred             eeeeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCC
Q 019384           54 RGEFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG  131 (342)
Q Consensus        54 ~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~  131 (342)
                      ..+.+|-..|+|+.|. .+..+++++.|..+++|..++... ....||.+.|+.++.+.....++++|.|..|++|-+..
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence            3345799999999997 455578999999999999887764 35789999999999998888899999999999999875


Q ss_pred             CCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccc----eeeEEEEEeeCCceEEEEc
Q 019384          132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLK----YQTRCVRCYPNGTGYALSS  207 (342)
Q Consensus       132 ~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~s  207 (342)
                      +..  ...+..  ++..|.++.+.+-  .+.+.||++++||.+-... .. ...+.+    ..+..+.+...+..+++++
T Consensus       264 ~~p--vsvLrg--htgavtaiafsP~--~sss~dgt~~~wd~r~~~~-~y-~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  264 GAP--VSVLRG--HTGAVTAIAFSPR--ASSSDDGTCRIWDARLEPR-IY-VPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             Cch--HHHHhc--cccceeeeccCcc--ccCCCCCceEecccccccc-cc-CCCCCCcccccceeeeecccccccccccc
Confidence            432  233333  4455666776653  3678899999999982111 00 000111    1122333444455566666


Q ss_pred             cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC-CCeEEEecCCCeEEEEeCCCceeeeccCCCCc
Q 019384          208 VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI-YGTFATGGCDGFVNVWDGNNKKRLYQYSKYPT  286 (342)
Q Consensus       208 ~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~-~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~  286 (342)
                      .++....  |....        +.+|..         -+.-+.++.+ ..+.+++-.+..+.+|+..++..++.+.+|..
T Consensus       336 ~d~ea~n--~e~~~--------l~~~~~---------~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd  396 (1113)
T KOG0644|consen  336 RDGEARN--HEFEQ--------LAWRSN---------LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD  396 (1113)
T ss_pred             CCccccc--chhhH--------hhhhcc---------ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc
Confidence            5554322  11100        001100         0111222222 23556677788899999999999999999999


Q ss_pred             ceEEEEECCCCCEEEEEEec
Q 019384          287 SIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       287 ~V~~v~~spdg~~las~s~~  306 (342)
                      .++.+.+.|=...++....+
T Consensus       397 ~~yvLd~Hpfn~ri~msag~  416 (1113)
T KOG0644|consen  397 EVYVLDVHPFNPRIAMSAGY  416 (1113)
T ss_pred             ceeeeeecCCCcHhhhhccC
Confidence            99999999987777766553

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.29  E-value=2.1e-11  Score=107.85  Aligned_cols=264  Identities=15%  Similarity=0.141  Sum_probs=183.0

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecc
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILG   97 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~   97 (342)
                      +..+-+.+.++.+|++|+.|+.-|.+-.+|..+..+..++.-...|.++.|....+++......-+.+||-...+...+.
T Consensus       128 ~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk  207 (545)
T KOG1272|consen  128 PEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLK  207 (545)
T ss_pred             cccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehh
Confidence            35677899999999999999999999999999999999888888899999987777777777777777875544433444


Q ss_pred             cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC--eEEEEEcCCeEEEEeCCC
Q 019384           98 KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN--RLVVATAGRHVNVYDLRN  175 (342)
Q Consensus        98 ~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~--~~~~~s~d~~v~iwd~~~  175 (342)
                      .| ..|..+.|-|-.-+|++++.-|.++.-|+..+...  ..+..  ....+..+..++.  .+-+|...|+|.+|.-..
T Consensus       208 ~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklV--a~~~t--~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s  282 (545)
T KOG1272|consen  208 RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLV--ASIRT--GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS  282 (545)
T ss_pred             hc-CchhhhcccchhheeeecccCCceEEEeechhhhh--HHHHc--cCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence            44 56888999997777888999999999998754321  11111  1222333444543  455778889999998765


Q ss_pred             CCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC
Q 019384          176 MSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY  255 (342)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~  255 (342)
                      .......  ..+...+.++++.++|.+.++.+.|..+.  +||++...+...+..            ..+...++||..|
T Consensus       283 kePLvKi--LcH~g~V~siAv~~~G~YMaTtG~Dr~~k--IWDlR~~~ql~t~~t------------p~~a~~ls~Sqkg  346 (545)
T KOG1272|consen  283 KEPLVKI--LCHRGPVSSIAVDRGGRYMATTGLDRKVK--IWDLRNFYQLHTYRT------------PHPASNLSLSQKG  346 (545)
T ss_pred             cchHHHH--HhcCCCcceEEECCCCcEEeeccccccee--Eeeeccccccceeec------------CCCcccccccccc
Confidence            4322222  23445688999999999999999998764  599976543222111            1256778888654


Q ss_pred             CeEEEecCCCeEEEEeC-CC--ceeeeccCCC--CcceEEEEECCCCCEEEEEE
Q 019384          256 GTFATGGCDGFVNVWDG-NN--KKRLYQYSKY--PTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       256 ~~l~sgs~Dg~I~iWd~-~~--~~~~~~~~~~--~~~V~~v~~spdg~~las~s  304 (342)
                        ++..|....|.||.- -.  +..-..+..|  .+.|..+.|.|-.-.|-.|-
T Consensus       347 --lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH  398 (545)
T KOG1272|consen  347 --LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH  398 (545)
T ss_pred             --ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence              444555668999942 22  1222233334  35899999999766665543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=1.1e-09  Score=102.42  Aligned_cols=195  Identities=12%  Similarity=0.099  Sum_probs=124.2

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeC---CCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE--EEecCC--cEEEEEecc
Q 019384           18 PSDGISNLRFSNHSDHLLVSSW---DKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF--SASADH--TVRRLVFSH   90 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~---Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~--s~s~D~--~i~~w~~~~   90 (342)
                      +...+.+.+|||||+.|+..+.   +..+.+||+.+++........+.+....|+|+++.+  +.+.++  .|.+|++.+
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t  276 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS  276 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            3457889999999999986543   457999999877654443344556678999888754  334444  477888887


Q ss_pred             CceeecccCCcceeEEEEeCCCCEEEEeeCC-CcEEEE--cCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC--
Q 019384           91 GKEDILGKHDAPVRCIEYSYAAGQVITGSWD-KSLKCW--DPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG--  165 (342)
Q Consensus        91 ~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D-~~I~iW--d~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d--  165 (342)
                      +....+..+...+....|+||++.|+..+.+ +...||  |+.++.  .. .+...........++++++.++..+.+  
T Consensus       277 g~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g  353 (429)
T PRK03629        277 GQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQ-RITWEGSQNQDADVSSDGKFMVMVSSNGG  353 (429)
T ss_pred             CCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--eE-EeecCCCCccCEEECCCCCEEEEEEccCC
Confidence            7765555555567889999999988766654 455566  554322  11 121111122235677788888776544  


Q ss_pred             -CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCe-EEEEEeec
Q 019384          166 -RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR-VAMEFFDL  219 (342)
Q Consensus       166 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~~i~~~d~  219 (342)
                       ..|.+||+.++....  ....  .......|+|||+.++..+.++. ..+++++.
T Consensus       354 ~~~I~~~dl~~g~~~~--Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~  405 (429)
T PRK03629        354 QQHIAKQDLATGGVQV--LTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST  405 (429)
T ss_pred             CceEEEEECCCCCeEE--eCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence             358889987764221  1111  11234678999999888876543 34566665

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.23  E-value=6.3e-10  Score=107.36  Aligned_cols=154  Identities=13%  Similarity=0.134  Sum_probs=118.4

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceE---EEEE--eCCC-CeEEEecCCcEEEEEeccC
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVL---DCCF--HDDS-SGFSASADHTVRRLVFSHG   91 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~---~~~~--~~~~-~~~s~s~D~~i~~w~~~~~   91 (342)
                      -+++|..-.+.-+..+++.+..++.+-+||...+.......+.....   ++.+  +.+. .+++|+.-+.+.+|.+...
T Consensus        86 ~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d  165 (967)
T KOG0974|consen   86 FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED  165 (967)
T ss_pred             ccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence            35667776667777889999999999999998877766666655432   2222  2222 2357778888999988744


Q ss_pred             cee-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEE
Q 019384           92 KED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNV  170 (342)
Q Consensus        92 ~~~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~i  170 (342)
                      +.. .+.+|.+.|.++.++-+|.+++|.|.|++||+|++++.....   ...+.|+.++..+.+.++.+++++.|-+.++
T Consensus       166 n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n~i~t~gedctcrv  242 (967)
T KOG0974|consen  166 NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPNRIITVGEDCTCRV  242 (967)
T ss_pred             CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccceeEEeccceEEEE
Confidence            433 488999999999999999999999999999999998654321   2345678889999998889999999999999


Q ss_pred             EeCC
Q 019384          171 YDLR  174 (342)
Q Consensus       171 wd~~  174 (342)
                      |+..
T Consensus       243 W~~~  246 (967)
T KOG0974|consen  243 WGVN  246 (967)
T ss_pred             Eecc
Confidence            9654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.22  E-value=5.2e-11  Score=114.63  Aligned_cols=115  Identities=22%  Similarity=0.279  Sum_probs=101.9

Q ss_pred             CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee--eeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc
Q 019384           15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR--GEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK   92 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~--~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~   92 (342)
                      ..+|++.|+++.|+.||.+++|.|.|.++|+|++.+++..  .-++|...|+.++|.+. .+++++.|.+.++|......
T Consensus       171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~~  249 (967)
T KOG0974|consen  171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGTQ  249 (967)
T ss_pred             ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEecccce
Confidence            4789999999999999999999999999999999887643  45789999999999988 88999999999999776666


Q ss_pred             eeecccCC-cceeEEEEeCCCCEEEEeeCCCcEEEEcCC
Q 019384           93 EDILGKHD-APVRCIEYSYAAGQVITGSWDKSLKCWDPR  130 (342)
Q Consensus        93 ~~~~~~h~-~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~  130 (342)
                      ...+.+|. +.|+.++..++.-.++|++.|+++++||+.
T Consensus       250 l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  250 LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            56777776 569999999888889999999999999975

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=3.8e-10  Score=100.62  Aligned_cols=243  Identities=14%  Similarity=0.127  Sum_probs=158.6

Q ss_pred             ecCCceEEEEEeCCC-CeEEEecCCcEEEEEeccCce--eecccCCcceeEEEEeCC--CCEEEEeeCCCcEEEEcCCCC
Q 019384           58 MHGGPVLDCCFHDDS-SGFSASADHTVRRLVFSHGKE--DILGKHDAPVRCIEYSYA--AGQVITGSWDKSLKCWDPRGA  132 (342)
Q Consensus        58 ~h~~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~~~--~~~~~h~~~V~~~~~~~~--~~~l~sgs~D~~I~iWd~~~~  132 (342)
                      .|.|.|..+.|...+ .++++|.|..+.+|||.....  ....+|...|.+..|-|.  ..-|++++.||.+++=.+...
T Consensus       140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t  219 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET  219 (559)
T ss_pred             CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence            599999999998544 567899999999999988764  345789999998888884  356899999999998765422


Q ss_pred             CCcc-eeeeeecCCCCcEEEEec-cCCeEEEEEcCCeEEEEeCCCCCCccc--ccccccc--eeeEEEEEeeCCc-eEEE
Q 019384          133 SGQE-RTLVGTYPQPERVYSLSL-VGNRLVVATAGRHVNVYDLRNMSQPEQ--RRESSLK--YQTRCVRCYPNGT-GYAL  205 (342)
Q Consensus       133 ~~~~-~~~~~~~~~~~~v~~~s~-~~~~~~~~s~d~~v~iwd~~~~~~~~~--~~~~~~~--~~~~~v~~~~~~~-~~~~  205 (342)
                      .... ...+..+..+...+.+.+ ++..|.+++.|+-+.-+|++.......  ......+  .....++..|... .+++
T Consensus       220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV  299 (559)
T KOG1334|consen  220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV  299 (559)
T ss_pred             cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence            2211 122333333333344444 466899999999999999987633211  1111111  3455677778765 6788


Q ss_pred             EccCCeEEEEEeechhhhhc-----ccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC--Cc---
Q 019384          206 SSVEGRVAMEFFDLSEASQA-----KKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN--NK---  275 (342)
Q Consensus       206 ~s~~~~~~i~~~d~~~~~~~-----~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~--~~---  275 (342)
                      +..+..++  +||.+.....     ...-.+.|..   ..+.+ .|++++|+-++.-|.+.-.|-.|+++...  .+   
T Consensus       300 gG~dqf~R--vYD~R~~~~e~~n~~~~~f~p~hl~---~d~~v-~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p  373 (559)
T KOG1334|consen  300 GGSDQFAR--VYDQRRIDKEENNGVLDKFCPHHLV---EDDPV-NITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP  373 (559)
T ss_pred             CChhhhhh--hhcccchhhccccchhhhcCCcccc---ccCcc-cceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence            88777654  5887643221     0111111211   12222 48999999777766666677789999532  12   


Q ss_pred             -------eeee-ccCCCCc--ceEEEEE-CCCCCEEEEEEec
Q 019384          276 -------KRLY-QYSKYPT--SIAALSF-SRDGRLLAVASSY  306 (342)
Q Consensus       276 -------~~~~-~~~~~~~--~V~~v~~-spdg~~las~s~~  306 (342)
                             ..+. .++||.+  .|..+-| .|...|+++||.=
T Consensus       374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC  415 (559)
T KOG1334|consen  374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC  415 (559)
T ss_pred             CCCcchhhccchhhcccccccccceeeeccCccceEEecCcc
Confidence                   1222 3788865  6888887 8999999998863

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=6.8e-09  Score=97.33  Aligned_cols=234  Identities=11%  Similarity=0.054  Sum_probs=138.9

Q ss_pred             cEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EEecC---CcEEEEEeccCceeecccCCcceeEEEEeCCCCEEE-
Q 019384           42 SVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SASAD---HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVI-  116 (342)
Q Consensus        42 ti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s~D---~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-  116 (342)
                      .|.++|..++.......+...+....|+|+++.+ ..+.+   ..|.+|++.++....+......+...+|+|||+.|+ 
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~  259 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF  259 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence            4777787766655555677888999999887654 44433   247788888777555544444556789999998876 


Q ss_pred             EeeCCC--cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC-C--eEEEEeCCCCCCcccccccccceee
Q 019384          117 TGSWDK--SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG-R--HVNVYDLRNMSQPEQRRESSLKYQT  191 (342)
Q Consensus       117 sgs~D~--~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d-~--~v~iwd~~~~~~~~~~~~~~~~~~~  191 (342)
                      +.+.++  .|.+||++++..   ..+...........++.+++.++..+.. +  .|.++|+.+++....  ... ....
T Consensus       260 ~~~~~g~~~Iy~~d~~~~~~---~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l--t~~-~~~~  333 (430)
T PRK00178        260 VLSKDGNPEIYVMDLASRQL---SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV--TFV-GNYN  333 (430)
T ss_pred             EEccCCCceEEEEECCCCCe---EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe--ecC-CCCc
Confidence            555555  578889875432   1122222222234567777777766542 2  477778766532111  111 1112


Q ss_pred             EEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC-C--eE
Q 019384          192 RCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD-G--FV  267 (342)
Q Consensus       192 ~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D-g--~I  267 (342)
                      ....++|+++.++..+. ++...++++|...... +.  +. +.    .     ......|+|||++|+..+.+ +  .|
T Consensus       334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~--lt-~~----~-----~~~~p~~spdg~~i~~~~~~~g~~~l  400 (430)
T PRK00178        334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RI--LT-DT----S-----LDESPSVAPNGTMLIYATRQQGRGVL  400 (430)
T ss_pred             cceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EE--cc-CC----C-----CCCCceECCCCCEEEEEEecCCceEE
Confidence            34568999998877654 4445677788754321 11  11 00    0     01134799999988765543 3  46


Q ss_pred             EEEeCCCceeeeccCCCCcceEEEEECC
Q 019384          268 NVWDGNNKKRLYQYSKYPTSIAALSFSR  295 (342)
Q Consensus       268 ~iWd~~~~~~~~~~~~~~~~V~~v~~sp  295 (342)
                      .+++... ...+.+..+.+.+...+|||
T Consensus       401 ~~~~~~g-~~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        401 MLVSING-RVRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             EEEECCC-CceEECcCCCCCcCCCccCC
Confidence            6777753 33344554556677888887

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.20  E-value=6.7e-09  Score=96.92  Aligned_cols=114  Identities=15%  Similarity=0.053  Sum_probs=80.9

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCC---CcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-E-EEecCC--cEEEEEecc
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWD---KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-F-SASADH--TVRRLVFSH   90 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~D---gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~-s~s~D~--~i~~w~~~~   90 (342)
                      +...+.+.+|+|||++|+.++.+   ..|++||+.+++......+.+.+.++.|++++.. + +.+.++  .|.+|++.+
T Consensus       188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~  267 (417)
T TIGR02800       188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG  267 (417)
T ss_pred             CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence            34468899999999999987654   4899999988765555556677778899987764 3 444444  477788877


Q ss_pred             CceeecccCCcceeEEEEeCCCCEEEEeeCC-C--cEEEEcCCC
Q 019384           91 GKEDILGKHDAPVRCIEYSYAAGQVITGSWD-K--SLKCWDPRG  131 (342)
Q Consensus        91 ~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D-~--~I~iWd~~~  131 (342)
                      +....+..+........|+|+++.|+.++.. +  .|.++|+.+
T Consensus       268 ~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~  311 (417)
T TIGR02800       268 KQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG  311 (417)
T ss_pred             CCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            7655555555555677899999988765543 3  466667653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.19  E-value=8.2e-10  Score=100.69  Aligned_cols=181  Identities=14%  Similarity=0.117  Sum_probs=117.8

Q ss_pred             CCCCEEEEeeCCCcEEEEcCCCCCCcc-eeeeeecCCCCcE--EEEecc------------------CCeEEEEEcCCeE
Q 019384          110 YAAGQVITGSWDKSLKCWDPRGASGQE-RTLVGTYPQPERV--YSLSLV------------------GNRLVVATAGRHV  168 (342)
Q Consensus       110 ~~~~~l~sgs~D~~I~iWd~~~~~~~~-~~~~~~~~~~~~v--~~~s~~------------------~~~~~~~s~d~~v  168 (342)
                      |...++|....||.+|+||...+.... .............  ..+...                  -..++.|+..|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            345789999999999999986543210 1111111111111  112111                  1257888999999


Q ss_pred             EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384          169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA  248 (342)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  248 (342)
                      .+|++..++.........+...++++....+-..+.+++.|..+  .+|+..+....+++  .+.+         ..+.+
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v--~~~~~~~~~~~~~~--~~~~---------~~~~s  149 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKV--VYILEKEKVIIRIW--KEQK---------PLVSS  149 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeE--EEEecccceeeeee--ccCC---------Cccce
Confidence            99999876433222223344556666666555566777766655  45666433222221  1111         14788


Q ss_pred             EEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCC-----CCEEEEEEe
Q 019384          249 IAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRD-----GRLLAVASS  305 (342)
Q Consensus       249 v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spd-----g~~las~s~  305 (342)
                      ++.+|||.+|++++  ++|++||+++++.+.+|++|.++|.+++|--+     |+++.++..
T Consensus       150 l~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~  209 (541)
T KOG4547|consen  150 LCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA  209 (541)
T ss_pred             EEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc
Confidence            99999999999987  58999999999999999999999999999887     888776654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.19  E-value=9.2e-10  Score=91.26  Aligned_cols=109  Identities=18%  Similarity=0.217  Sum_probs=82.1

Q ss_pred             CCCeEEEEEcCCCCeEEE--EeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EEec---CCcEEEEEeccCc
Q 019384           19 SDGISNLRFSNHSDHLLV--SSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SASA---DHTVRRLVFSHGK   92 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s--~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s~---D~~i~~w~~~~~~   92 (342)
                      ...|.+++|+|+|+.+|.  |..++.|.|||++...+. .+ +.+.+..+.|+|+++.+ +|+.   .|.+.+||....+
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~-~~-~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~  136 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIF-SF-GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK  136 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeE-ee-cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence            345999999999999764  446789999999743333 33 45778899999888764 5553   3569999998665


Q ss_pred             eeecccCCcceeEEEEeCCCCEEEEeeC------CCcEEEEcCC
Q 019384           93 EDILGKHDAPVRCIEYSYAAGQVITGSW------DKSLKCWDPR  130 (342)
Q Consensus        93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~------D~~I~iWd~~  130 (342)
                      ......|. .+..++|+|+|++|++++.      |..++||+..
T Consensus       137 ~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  137 KISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            44333444 4789999999999988764      7889999974

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.18  E-value=5.6e-09  Score=97.45  Aligned_cols=206  Identities=14%  Similarity=0.144  Sum_probs=126.3

Q ss_pred             cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCC---CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCe
Q 019384           82 TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWD---KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR  158 (342)
Q Consensus        82 ~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D---~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~  158 (342)
                      .|.++|........+..+...+.+.+|+||+++|+.++.+   ..|.+||+.++..   ..+...........++.+++.
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---~~~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---EKVASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---EEeecCCCCccceEECCCCCE
Confidence            4666666555555566677788999999999998876654   4799999875432   122222222223456777776


Q ss_pred             EEEE-EcCC--eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEE
Q 019384          159 LVVA-TAGR--HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHR  234 (342)
Q Consensus       159 ~~~~-s~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~  234 (342)
                      ++.. +.++  .|.+||+.+.....  .. ..........++|+++.++..+. .+...++.+|...... .  .+..+.
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~~--l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~--~l~~~~  321 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLTR--LT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-R--RLTFRG  321 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEEE--CC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-E--EeecCC
Confidence            6644 4343  58888987653211  11 11111234568899988776653 4555677777643221 1  111110


Q ss_pred             ecCCCCceeeeeeEEEEcCCCCeEEEecCCC---eEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCDG---FVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg---~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                               ..+...+|+|+|++|+.++.++   .|.+||..++.. ..+... ......+|+|||++|+..+..+
T Consensus       322 ---------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       322 ---------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             ---------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence                     1245678999999998887765   799999887543 222222 2345678999999998887643

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=9.8e-09  Score=96.40  Aligned_cols=234  Identities=10%  Similarity=0.031  Sum_probs=135.9

Q ss_pred             cEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EEec-CC--cEEEEEeccCceeecccCCcceeEEEEeCCCCEEE-
Q 019384           42 SVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SASA-DH--TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVI-  116 (342)
Q Consensus        42 ti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s~-D~--~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-  116 (342)
                      .+.++|..+...+....+...+.+..|+|+++.+ ..+. ++  .|.+|++.+++...+..........+|+||++.|+ 
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~  278 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL  278 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence            5677787665555555567788899999888754 3332 33  46777877766544433333445789999999775 


Q ss_pred             EeeCCCc--EEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc-CC--eEEEEeCCCCCCcccccccccceee
Q 019384          117 TGSWDKS--LKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA-GR--HVNVYDLRNMSQPEQRRESSLKYQT  191 (342)
Q Consensus       117 sgs~D~~--I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~  191 (342)
                      +.+.++.  |.++|++++..   ..+...........++.+++.++..+. ++  .|.++|+.+++.......   ....
T Consensus       279 ~~~~~g~~~Iy~~dl~tg~~---~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~---g~~~  352 (448)
T PRK04792        279 VLSKDGQPEIYVVDIATKAL---TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE---GEQN  352 (448)
T ss_pred             EEeCCCCeEEEEEECCCCCe---EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC---CCCC
Confidence            4566665  66778764322   112221112223456777777766553 33  466667765532111111   1112


Q ss_pred             EEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecC-CC--eE
Q 019384          192 RCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGC-DG--FV  267 (342)
Q Consensus       192 ~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~-Dg--~I  267 (342)
                      ...+++|+|+.++..+. ++...|+.+|..+... ..  +...     .     ......|+|+|++|+..+. ++  .+
T Consensus       353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~--lt~~-----~-----~d~~ps~spdG~~I~~~~~~~g~~~l  419 (448)
T PRK04792        353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QV--LTST-----R-----LDESPSVAPNGTMVIYSTTYQGKQVL  419 (448)
T ss_pred             cCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EE--ccCC-----C-----CCCCceECCCCCEEEEEEecCCceEE
Confidence            23578999998877654 4455677777654321 11  1100     0     0112479999998766543 33  37


Q ss_pred             EEEeCCCceeeeccCCCCcceEEEEECC
Q 019384          268 NVWDGNNKKRLYQYSKYPTSIAALSFSR  295 (342)
Q Consensus       268 ~iWd~~~~~~~~~~~~~~~~V~~v~~sp  295 (342)
                      ++++.+ ++..+.+..+.+.+...+|||
T Consensus       420 ~~~~~~-G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        420 AAVSID-GRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             EEEECC-CCceEECcCCCCCcCCCccCC
Confidence            777764 555556666666778888887

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=4.5e-09  Score=90.71  Aligned_cols=186  Identities=13%  Similarity=0.155  Sum_probs=120.9

Q ss_pred             ceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC---CeEEEEEcCCeEEEEeCCCCCC
Q 019384          102 PVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG---NRLVVATAGRHVNVYDLRNMSQ  178 (342)
Q Consensus       102 ~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~---~~~~~~s~d~~v~iwd~~~~~~  178 (342)
                      -++.++|++.-..++.+..|-+||++|... +.  ...+.+. ....+.++.+.+   ..++++... .|.+|.......
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~--pt~Lks~-sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln  174 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TC--PTKLKSV-SQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLN  174 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CC--Cceecch-hhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccc
Confidence            467899998666789999999999999764 22  1233332 234466666643   456666654 599997643211


Q ss_pred             c-----------ccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384          179 P-----------EQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN  247 (342)
Q Consensus       179 ~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  247 (342)
                      .           .+....+-...++++.|.+||..+++++-+.. .+.+||...........     +.      .+.++
T Consensus       175 ~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gss-si~iWdpdtg~~~pL~~-----~g------lgg~s  242 (445)
T KOG2139|consen  175 ANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSS-SIMIWDPDTGQKIPLIP-----KG------LGGFS  242 (445)
T ss_pred             cccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcc-eEEEEcCCCCCcccccc-----cC------CCcee
Confidence            1           01111112245788999999998888876544 56789986543322110     00      12477


Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEeCCC-ceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          248 AIAFHPIYGTFATGGCDGFVNVWDGNN-KKRLYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       248 ~v~~sp~~~~l~sgs~Dg~I~iWd~~~-~~~~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                      -+.|||||.+|..+.-|+..++|.... .....- .--.++|....|+|+|++|.-+++
T Consensus       243 lLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw-~lgsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  243 LLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW-ILGSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             eEEEcCCCCEEEEecccceeeeehhcccceecce-eccCCceeeeeecCCCCEEEEEEc
Confidence            899999999999999999999995443 222221 223348999999999997776654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.13  E-value=4e-10  Score=93.22  Aligned_cols=152  Identities=15%  Similarity=0.192  Sum_probs=103.4

Q ss_pred             CCeEEEEEcCC--CCeE-EEEeCCCcEEEEECCCce-e----------eeeeecCCceEEEEEe-CCCCeEEEecCCcEE
Q 019384           20 DGISNLRFSNH--SDHL-LVSSWDKSVRLYDASANV-L----------RGEFMHGGPVLDCCFH-DDSSGFSASADHTVR   84 (342)
Q Consensus        20 ~~V~~l~fs~~--~~~l-~s~s~Dgti~vwd~~~~~-~----------~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~   84 (342)
                      +.+.+..+.-+  .+.| +.|=.+|.+-+||++++. .          .....|+++|.++.|. .-.+-++++.+..+.
T Consensus       151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~  230 (323)
T KOG0322|consen  151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV  230 (323)
T ss_pred             CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence            45555554332  2334 455567999999998762 1          1223589999999996 334558888888888


Q ss_pred             EEEeccCc--ee---ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeE
Q 019384           85 RLVFSHGK--ED---ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRL  159 (342)
Q Consensus        85 ~w~~~~~~--~~---~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~  159 (342)
                      .|.+....  ..   .+.--...|..+..-||++.+||++||+.||+|.-++...  ...+..|......++|+.+.+.+
T Consensus       231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p--LAVLkyHsagvn~vAfspd~~lm  308 (323)
T KOG0322|consen  231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP--LAVLKYHSAGVNAVAFSPDCELM  308 (323)
T ss_pred             eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc--hhhhhhhhcceeEEEeCCCCchh
Confidence            88876542  11   1111234578888899999999999999999999876433  23444444333334444455688


Q ss_pred             EEEEcCCeEEEEeC
Q 019384          160 VVATAGRHVNVYDL  173 (342)
Q Consensus       160 ~~~s~d~~v~iwd~  173 (342)
                      ++++.|.+|.+|++
T Consensus       309 AaaskD~rISLWkL  322 (323)
T KOG0322|consen  309 AAASKDARISLWKL  322 (323)
T ss_pred             hhccCCceEEeeec
Confidence            99999999999986

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.12  E-value=2.1e-10  Score=101.70  Aligned_cols=198  Identities=20%  Similarity=0.169  Sum_probs=135.5

Q ss_pred             CCCCccCC-CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee-cCCceEEEEEeCCCCeE-EEecCCcEE
Q 019384            8 PTSGRELG-NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-SASADHTVR   84 (342)
Q Consensus         8 ~~~~~~~~-~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~-h~~~V~~~~~~~~~~~~-s~s~D~~i~   84 (342)
                      -.+|-||+ -.....|+.+.|-|-=-+|++++.-|-++--|++.|++...+. -.+.+..++..|-..++ +|...|+|.
T Consensus       197 D~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVS  276 (545)
T KOG1272|consen  197 DNNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVS  276 (545)
T ss_pred             cCCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEE
Confidence            35677777 3446789999999988889999999999999999988766543 34556566666655555 778899999


Q ss_pred             EEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEE
Q 019384           85 RLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVAT  163 (342)
Q Consensus        85 ~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s  163 (342)
                      +|.....+. ..+.-|.++|.++++.++|.+++|.+.|..++|||+++.. +.    ..+..+.....++++...+++++
T Consensus       277 lWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-ql----~t~~tp~~a~~ls~SqkglLA~~  351 (545)
T KOG1272|consen  277 LWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY-QL----HTYRTPHPASNLSLSQKGLLALS  351 (545)
T ss_pred             ecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc-cc----ceeecCCCccccccccccceeee
Confidence            998776653 3456799999999999999999999999999999998633 11    11111222334666666678888


Q ss_pred             cCCeEEEEe-CCCCC-Cccc-ccccccceeeEEEEEeeCCceEEEEccCC
Q 019384          164 AGRHVNVYD-LRNMS-QPEQ-RRESSLKYQTRCVRCYPNGTGYALSSVEG  210 (342)
Q Consensus       164 ~d~~v~iwd-~~~~~-~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~s~~~  210 (342)
                      .+..|.||. ...++ .... -..+.....+..+.|.|-...+-+|-..|
T Consensus       352 ~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  352 YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence            888999994 33321 1110 11122334555666666554444444433

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=1.4e-08  Score=92.24  Aligned_cols=288  Identities=18%  Similarity=0.156  Sum_probs=170.5

Q ss_pred             ccCCCCCCCCeEEEEEcCCCCeEEE-----EeCCCc-----EEEEECCCceeeeeee--cCCceEEEEEeCCCCeEEEec
Q 019384           12 RELGNPPSDGISNLRFSNHSDHLLV-----SSWDKS-----VRLYDASANVLRGEFM--HGGPVLDCCFHDDSSGFSASA   79 (342)
Q Consensus        12 ~~~~~~~~~~V~~l~fs~~~~~l~s-----~s~Dgt-----i~vwd~~~~~~~~~~~--h~~~V~~~~~~~~~~~~s~s~   79 (342)
                      ..++.... .++.|.|||-+.+|.|     --.|++     +++|++.++.....+.  .+.. ++..|+.|..++.--.
T Consensus        67 ~~lt~~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv  144 (566)
T KOG2315|consen   67 VVLCVELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARLV  144 (566)
T ss_pred             EEEEeccc-eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhhh
Confidence            44454455 7889999998888764     223333     5589888754443332  1222 6788887776654445


Q ss_pred             CCcEEEEEeccCceeecccCCcceeEEEEeCCC--CEEE-----EeeCCCcEEEEcCCCCCCcceeee--eecCCCCcEE
Q 019384           80 DHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAA--GQVI-----TGSWDKSLKCWDPRGASGQERTLV--GTYPQPERVY  150 (342)
Q Consensus        80 D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~--~~l~-----sgs~D~~I~iWd~~~~~~~~~~~~--~~~~~~~~v~  150 (342)
                      .+.+.+++....+...-.-|...|..+.++|..  ..++     ..+.-..+|||...- .... ..+  ..+- ...-+
T Consensus       145 ~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~-~~~~-~~~a~ksFF-kadkv  221 (566)
T KOG2315|consen  145 SNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE-EGQH-QPVANKSFF-KADKV  221 (566)
T ss_pred             cceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc-cccc-chhhhcccc-cccee
Confidence            567888887764432223467788999999863  2343     245556899997641 1111 111  1110 11123


Q ss_pred             EEecc--CC-eEEEEEcC-----------CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEE
Q 019384          151 SLSLV--GN-RLVVATAG-----------RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEF  216 (342)
Q Consensus       151 ~~s~~--~~-~~~~~s~d-----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~  216 (342)
                      .+.++  +. .|+.++.|           .++.+.+....+....   ..-.+.+-++.|+|++..++++-.--=-.+.+
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~---L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvti  298 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP---LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTI  298 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe---cCCCCCceEEEECCCCCEEEEEEecccceEEE
Confidence            44444  22 33333333           2466666652211111   11234677899999998877664322223456


Q ss_pred             eechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEec---CCCeEEEEeCCCceeeeccCCCCcceEEEEE
Q 019384          217 FDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGG---CDGFVNVWDGNNKKRLYQYSKYPTSIAALSF  293 (342)
Q Consensus       217 ~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs---~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~  293 (342)
                      ||.+..   -.+.+.           .+|=+++-|+|.|++|+.++   .-|.|-|||+.+.+++..+..-  .-+-++|
T Consensus       299 fnlr~~---~v~df~-----------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW  362 (566)
T KOG2315|consen  299 FNLRGK---PVFDFP-----------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEW  362 (566)
T ss_pred             EcCCCC---EeEeCC-----------CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEE
Confidence            776422   111111           12567899999999988876   4679999999998888776543  3467899


Q ss_pred             CCCCCEEEEEEec-cccC--CCCCCCCCcEEEE
Q 019384          294 SRDGRLLAVASSY-TFEE--GDKPHEPDAIFVR  323 (342)
Q Consensus       294 spdg~~las~s~~-~~~~--~~~~~~~~~~~~~  323 (342)
                      +|||++|+++.-. ..+.  |-|++++.+-+++
T Consensus       363 ~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~  395 (566)
T KOG2315|consen  363 SPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH  395 (566)
T ss_pred             cCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence            9999999988853 4443  4466666666664

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.10  E-value=1.7e-06  Score=78.64  Aligned_cols=278  Identities=14%  Similarity=0.113  Sum_probs=152.6

Q ss_pred             EEEEeCC----CcEEEEEC--CCceee--eeeecCCceEEEEEeCCCCe-EEEec----CCcEEEEEeccC--ceeec--
Q 019384           34 LLVSSWD----KSVRLYDA--SANVLR--GEFMHGGPVLDCCFHDDSSG-FSASA----DHTVRRLVFSHG--KEDIL--   96 (342)
Q Consensus        34 l~s~s~D----gti~vwd~--~~~~~~--~~~~h~~~V~~~~~~~~~~~-~s~s~----D~~i~~w~~~~~--~~~~~--   96 (342)
                      ++.|+++    +.|.+|++  .++++.  ...........+++++++.. +++..    ++.|..|.+...  ....+  
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            4566766    68888888  344432  22334455667888766665 45544    457888887664  32221  


Q ss_pred             -ccCCcceeEEEEeCCCCEEEEee-CCCcEEEEcCCCCCCccee-eeeec---------C--CCCcEEEEeccCCeEEEE
Q 019384           97 -GKHDAPVRCIEYSYAAGQVITGS-WDKSLKCWDPRGASGQERT-LVGTY---------P--QPERVYSLSLVGNRLVVA  162 (342)
Q Consensus        97 -~~h~~~V~~~~~~~~~~~l~sgs-~D~~I~iWd~~~~~~~~~~-~~~~~---------~--~~~~v~~~s~~~~~~~~~  162 (342)
                       ......-..++++|+++.|+.+. .+++|.++++......... ....+         +  .+...+.++++++.+++.
T Consensus        82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~  161 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP  161 (345)
T ss_dssp             EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred             eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence             11233456788999999887765 5789999998753211111 01100         0  011123466666766655


Q ss_pred             Ec-CCeEEEEeCCCCCCcc-c--ccccccceeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhc--ccceeeeEEe
Q 019384          163 TA-GRHVNVYDLRNMSQPE-Q--RRESSLKYQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQA--KKYAFKCHRK  235 (342)
Q Consensus       163 s~-d~~v~iwd~~~~~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~--~~~~~~~h~~  235 (342)
                      .. ...|.+|++....... .  ...........-+.++|+++.+.+. ..++++.+  ++.......  ....+.....
T Consensus       162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v--~~~~~~~g~~~~~~~~~~~~~  239 (345)
T PF10282_consen  162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSV--FDYDPSDGSLTEIQTISTLPE  239 (345)
T ss_dssp             ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEE--EEEETTTTEEEEEEEEESCET
T ss_pred             ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEE--EeecccCCceeEEEEeeeccc
Confidence            33 3579999987653111 1  1111223345678899999876554 55666655  454311111  1111111111


Q ss_pred             cCCCCceeeeeeEEEEcCCCCeEEE-ecCCCeEEEEeCC--Cc--eeeeccCCCCcceEEEEECCCCCEEEEEEeccccC
Q 019384          236 SEAGRDIVYPVNAIAFHPIYGTFAT-GGCDGFVNVWDGN--NK--KRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEE  310 (342)
Q Consensus       236 ~~~~~~~~~~v~~v~~sp~~~~l~s-gs~Dg~I~iWd~~--~~--~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~  310 (342)
                      ...+   ......|+++|||++|.+ ...+.+|.+|++.  ++  +.+..+......-..++|+|||++|+++....   
T Consensus       240 ~~~~---~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s---  313 (345)
T PF10282_consen  240 GFTG---ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS---  313 (345)
T ss_dssp             TSCS---SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT---
T ss_pred             cccc---cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC---
Confidence            0000   113567899999998654 5567799999983  23  23333332334468999999999999987533   


Q ss_pred             CCCCCCCCcEEEEEcc
Q 019384          311 GDKPHEPDAIFVRSVN  326 (342)
Q Consensus       311 ~~~~~~~~~~~~~~~~  326 (342)
                             +.|.+++++
T Consensus       314 -------~~v~vf~~d  322 (345)
T PF10282_consen  314 -------NTVSVFDID  322 (345)
T ss_dssp             -------TEEEEEEEE
T ss_pred             -------CeEEEEEEe
Confidence                   247777664

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.07  E-value=6.2e-08  Score=88.33  Aligned_cols=268  Identities=17%  Similarity=0.075  Sum_probs=139.1

Q ss_pred             CeE-EEEeCCCcEEEEECCCceeeeeeecCCce-EEEEEeCCCC-eEEEecCCcEEEEEeccCceeecccCCcceeEEEE
Q 019384           32 DHL-LVSSWDKSVRLYDASANVLRGEFMHGGPV-LDCCFHDDSS-GFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEY  108 (342)
Q Consensus        32 ~~l-~s~s~Dgti~vwd~~~~~~~~~~~h~~~V-~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~  108 (342)
                      +++ ++-..++.|.|.|..+.+....+...+.+ ..+.|+++++ ++.++.|+.+.++|+.+.+......-...-.++++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~   85 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV   85 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE
Confidence            344 45678899999999988877776655555 4467887665 56888899999999999874322223345678999


Q ss_pred             eCCCCEEEEe-eCCCcEEEEcCCCCCCcceeeeeecC---CCCcEEEEe--ccCCeEEEEEcC-CeEEEEeCCCCCCccc
Q 019384          109 SYAAGQVITG-SWDKSLKCWDPRGASGQERTLVGTYP---QPERVYSLS--LVGNRLVVATAG-RHVNVYDLRNMSQPEQ  181 (342)
Q Consensus       109 ~~~~~~l~sg-s~D~~I~iWd~~~~~~~~~~~~~~~~---~~~~v~~~s--~~~~~~~~~s~d-~~v~iwd~~~~~~~~~  181 (342)
                      ++||++++.+ ..++.+.++|.++.+...........   ...++..+.  .....++.+-.+ +.|-+.|....+....
T Consensus        86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~  165 (369)
T PF02239_consen   86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV  165 (369)
T ss_dssp             --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred             cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce
Confidence            9999988755 57899999998764332111111111   122343443  233445555554 7788888876533221


Q ss_pred             ccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccccee--eeEEecCCCCce--eeeeeEEEEcCCCCe
Q 019384          182 RRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAF--KCHRKSEAGRDI--VYPVNAIAFHPIYGT  257 (342)
Q Consensus       182 ~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~--~~h~~~~~~~~~--~~~v~~v~~sp~~~~  257 (342)
                      ... ..........+.|++++++++....+ .+-++|..+.........  ..|.....+..|  .+++.+..  -.+.+
T Consensus       166 ~~i-~~g~~~~D~~~dpdgry~~va~~~sn-~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~--~~~~~  241 (369)
T PF02239_consen  166 TTI-KVGRFPHDGGFDPDGRYFLVAANGSN-KIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS--GLGYF  241 (369)
T ss_dssp             EEE-E--TTEEEEEE-TTSSEEEEEEGGGT-EEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE--BSSSS
T ss_pred             eee-cccccccccccCcccceeeecccccc-eeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec--cccce
Confidence            111 11112345678899988776543222 445577654322111100  011110000000  01222111  11233


Q ss_pred             EEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEE
Q 019384          258 FATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       258 l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s  304 (342)
                      .++.-....+.+||..+.+.++++...... .-+.-+||+++|.+..
T Consensus       242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~  287 (369)
T PF02239_consen  242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDT  287 (369)
T ss_dssp             EEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-
T ss_pred             ecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeec
Confidence            322222335667888888888887765555 6788899999999873

...

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.07  E-value=1.2e-08  Score=87.58  Aligned_cols=249  Identities=15%  Similarity=0.197  Sum_probs=153.7

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-----eeeee-ecC------------CceEEEEEeCCC---CeEEE
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-----LRGEF-MHG------------GPVLDCCFHDDS---SGFSA   77 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-----~~~~~-~h~------------~~V~~~~~~~~~---~~~s~   77 (342)
                      .+-|.+|-|+..|.+||||..+|.|-+|.-....     ..+++ .|.            ..|..+.|.+.+   ..+..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4568899999999999999999999999854211     22222 343            357888997443   34677


Q ss_pred             ecCCcEEEEEeccCceee-------------------------------------cccCCcceeEEEEeCCCCEEEEeeC
Q 019384           78 SADHTVRRLVFSHGKEDI-------------------------------------LGKHDAPVRCIEYSYAAGQVITGSW  120 (342)
Q Consensus        78 s~D~~i~~w~~~~~~~~~-------------------------------------~~~h~~~V~~~~~~~~~~~l~sgs~  120 (342)
                      +.|.+|++|-+..+....                                     -..|+--|+++.++.|...++|+ .
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence            899999999875432110                                     01477889999999988877764 6


Q ss_pred             CCcEEEEcCCCCCCcceeeeeecCC-----CCcEEEEecc---CCeEEEEEcCCeEEEEeCCCCCCc------ccccccc
Q 019384          121 DKSLKCWDPRGASGQERTLVGTYPQ-----PERVYSLSLV---GNRLVVATAGRHVNVYDLRNMSQP------EQRRESS  186 (342)
Q Consensus       121 D~~I~iWd~~~~~~~~~~~~~~~~~-----~~~v~~~s~~---~~~~~~~s~d~~v~iwd~~~~~~~------~~~~~~~  186 (342)
                      |=.|.+|.++-..+ ...++...+.     +.-+.+-.+.   .+.++-.+..|+|++-|+|.....      ....+.+
T Consensus       184 dLRINLWnlei~d~-sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQ-SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             ceeeeeccccccCC-ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence            78999999874222 2222221111     0112222222   357788888899999999843210      1111111


Q ss_pred             cc--------eeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh-cccceeeeEEec----CC--CCceeeeeeEEEE
Q 019384          187 LK--------YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ-AKKYAFKCHRKS----EA--GRDIVYPVNAIAF  251 (342)
Q Consensus       187 ~~--------~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~-~~~~~~~~h~~~----~~--~~~~~~~v~~v~~  251 (342)
                      ..        ..+..+.|+.+|+++++-.-   ..+++||+..... ...+  +.|...    ..  ..+....--.|+|
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDy---ltvk~wD~nme~~pv~t~--~vh~~lr~kLc~lYEnD~IfdKFec~~  337 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDY---LTVKLWDLNMEAKPVETY--PVHEYLRSKLCSLYENDAIFDKFECSW  337 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEecc---ceeEEEeccccCCcceEE--eehHhHHHHHHHHhhccchhheeEEEE
Confidence            11        12455789999998876542   3567899853332 2222  222111    00  0011111234789


Q ss_pred             cCCCCeEEEecCCCeEEEEeCCC
Q 019384          252 HPIYGTFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       252 sp~~~~l~sgs~Dg~I~iWd~~~  274 (342)
                      +-++..++|||...-+++++...
T Consensus       338 sg~~~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  338 SGNDSYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             cCCcceEecccccceEEEecCCC
Confidence            98889999999999999999543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.05  E-value=7.9e-08  Score=89.69  Aligned_cols=243  Identities=13%  Similarity=0.045  Sum_probs=134.7

Q ss_pred             CcEEEEECCCceeeeeeecCCceEEEEEeCCCCe--E--EEecCCc--EEEEEeccCceeecccCCcceeEEEEeCCCCE
Q 019384           41 KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG--F--SASADHT--VRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ  114 (342)
Q Consensus        41 gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~--~--s~s~D~~--i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~  114 (342)
                      ..|.+.|..++..+........+..=.|+|+++.  +  +.-.++.  |.+.++.+++...+..........+|+|||+.
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~  244 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL  244 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence            3566777766655444344556667789988752  2  3333443  55556766665544444445567899999988


Q ss_pred             EEEeeC-----CCcEEEEcCCCCC-CcceeeeeecCCCCcEEEEeccCCeEEEEE-cCCeEEEEe--CCCCCCccccccc
Q 019384          115 VITGSW-----DKSLKCWDPRGAS-GQERTLVGTYPQPERVYSLSLVGNRLVVAT-AGRHVNVYD--LRNMSQPEQRRES  185 (342)
Q Consensus       115 l~sgs~-----D~~I~iWd~~~~~-~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s-~d~~v~iwd--~~~~~~~~~~~~~  185 (342)
                      |+-.+.     |-.+.+|++..+. +..............-..++++++.|+..+ .++...+|.  +........... 
T Consensus       245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-  323 (428)
T PRK01029        245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-  323 (428)
T ss_pred             EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-
Confidence            865432     3345557765421 111122211111122346788888777665 355555554  332111111111 


Q ss_pred             ccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEe-cC
Q 019384          186 SLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATG-GC  263 (342)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sg-s~  263 (342)
                      ..........|+|+|+.++..+. ++...|++||........   +...         ...+....|+|||++|+.. ..
T Consensus       324 ~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~---Lt~~---------~~~~~~p~wSpDG~~L~f~~~~  391 (428)
T PRK01029        324 KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ---LTTS---------PENKESPSWAIDSLHLVYSAGN  391 (428)
T ss_pred             cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE---ccCC---------CCCccceEECCCCCEEEEEECC
Confidence            11123346779999998876643 344567788875432211   1100         0124567899999987643 32


Q ss_pred             --CCeEEEEeCCCceeeeccCCCCcceEEEEECCCC
Q 019384          264 --DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDG  297 (342)
Q Consensus       264 --Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg  297 (342)
                        ...|++||+.+++.. .+....+.+...+|||-.
T Consensus       392 ~g~~~L~~vdl~~g~~~-~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        392 SNESELYLISLITKKTR-KIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCceEEEEECCCCCEE-EeecCCCcccCceecCCC
Confidence              347888898876543 333344567788888753

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=3.9e-08  Score=92.37  Aligned_cols=205  Identities=13%  Similarity=0.134  Sum_probs=120.4

Q ss_pred             cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCC-C--cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCe
Q 019384           82 TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWD-K--SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR  158 (342)
Q Consensus        82 ~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D-~--~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~  158 (342)
                      .+.++|.+..+.+.+..+...+.+..|+|||+.|+-.+.+ +  .|.+||+.++..   ..+...........++++++.
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~---~~lt~~~g~~~~~~wSPDG~~  275 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR---EKVTSFPGINGAPRFSPDGKK  275 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe---EEecCCCCCcCCeeECCCCCE
Confidence            3555566555555566667788899999999988765543 3  588889865432   122222222223567788887


Q ss_pred             EEEE-EcCCe--EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEE
Q 019384          159 LVVA-TAGRH--VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHR  234 (342)
Q Consensus       159 ~~~~-s~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~  234 (342)
                      ++.. ..++.  |.++|+.++...  ... ..........|+|+++.++..+. ++...++.+|..+... .......+ 
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~--~lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt~~g~-  350 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALT--RIT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SRLTFEGE-  350 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeE--ECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEEecCCC-
Confidence            7654 45554  777788765321  111 11122345678999998776653 4566777788753321 11111110 


Q ss_pred             ecCCCCceeeeeeEEEEcCCCCeEEEecC-CC--eEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          235 KSEAGRDIVYPVNAIAFHPIYGTFATGGC-DG--FVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~-Dg--~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                                .....+|+|||++|+..+. ++  .|.++|..+++. ..+.... .....+|+|||++|+..+..
T Consensus       351 ----------~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~~-~d~~ps~spdG~~I~~~~~~  413 (448)
T PRK04792        351 ----------QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTSTR-LDESPSVAPNGTMVIYSTTY  413 (448)
T ss_pred             ----------CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCCC-CCCCceECCCCCEEEEEEec
Confidence                      1224689999998866544 44  455567776643 2233221 22356899999999877653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.04  E-value=3.2e-07  Score=82.22  Aligned_cols=229  Identities=11%  Similarity=-0.001  Sum_probs=127.2

Q ss_pred             EEcCCCCeEEEEeC----------CCcEEEEECCCceeeeeeecCC--------ceEEEEEeCCCCeE-EEe--cCCcEE
Q 019384           26 RFSNHSDHLLVSSW----------DKSVRLYDASANVLRGEFMHGG--------PVLDCCFHDDSSGF-SAS--ADHTVR   84 (342)
Q Consensus        26 ~fs~~~~~l~s~s~----------Dgti~vwd~~~~~~~~~~~h~~--------~V~~~~~~~~~~~~-s~s--~D~~i~   84 (342)
                      .+|||++.|..+..          +..|.|||+.+.+....+....        ......++++++.+ ..-  .+..+.
T Consensus        52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~  131 (352)
T TIGR02658        52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVG  131 (352)
T ss_pred             eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEE
Confidence            38999998877655          7999999999887666553221        22367778887654 333  378899


Q ss_pred             EEEeccCceee-cccCCcceeEEEEeCCCCEEEEe--------eCCCcEEEEcCCCCCCcce---eeeee-----cCCCC
Q 019384           85 RLVFSHGKEDI-LGKHDAPVRCIEYSYAAGQVITG--------SWDKSLKCWDPRGASGQER---TLVGT-----YPQPE  147 (342)
Q Consensus        85 ~w~~~~~~~~~-~~~h~~~V~~~~~~~~~~~l~sg--------s~D~~I~iWd~~~~~~~~~---~~~~~-----~~~~~  147 (342)
                      +.|+.+++... +.-           |++..++..        +.|+......+........   ..+..     +..+ 
T Consensus       132 VvD~~~~kvv~ei~v-----------p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP-  199 (352)
T TIGR02658       132 VVDLEGKAFVRMMDV-----------PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP-  199 (352)
T ss_pred             EEECCCCcEEEEEeC-----------CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC-
Confidence            99998877321 111           222222221        2333332222211100000   00000     0111 


Q ss_pred             cEEEEeccCCeEEEEEcCCeEEEEeCCCCCCccccc----ccc------cceeeEEEEEeeCCceEEEEccC--------
Q 019384          148 RVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRR----ESS------LKYQTRCVRCYPNGTGYALSSVE--------  209 (342)
Q Consensus       148 ~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~----~~~------~~~~~~~v~~~~~~~~~~~~s~~--------  209 (342)
                         .+...++..+..+..|+|.+.|+..........    ...      -+....-++++++++.+++....        
T Consensus       200 ---~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~  276 (352)
T TIGR02658       200 ---AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKT  276 (352)
T ss_pred             ---ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccC
Confidence               233323344555666999999965432211100    000      01111238899999888775422        


Q ss_pred             CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEec-CCCeEEEEeCCCceeeecc
Q 019384          210 GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGG-CDGFVNVWDGNNKKRLYQY  281 (342)
Q Consensus       210 ~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs-~Dg~I~iWd~~~~~~~~~~  281 (342)
                      +...++++|..+.+....... +           ..+..++|+||++ .|++.. .++.|.+.|..+++.+.++
T Consensus       277 ~~~~V~ViD~~t~kvi~~i~v-G-----------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       277 ASRFLFVVDAKTGKRLRKIEL-G-----------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCCEEEEEECCCCeEEEEEeC-C-----------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            224677888854432222111 1           1477899999999 776555 6889999999999888776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=8.9e-08  Score=89.32  Aligned_cols=209  Identities=11%  Similarity=0.056  Sum_probs=119.1

Q ss_pred             cEEEEEeccCceeecccCCcceeEEEEeCCCCE--E-EEeeCCC--cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC
Q 019384           82 TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--V-ITGSWDK--SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG  156 (342)
Q Consensus        82 ~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~--l-~sgs~D~--~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~  156 (342)
                      .|.+.|.+..+...+......+.+=+|+|||+.  + +.+..++  .|.+.++.++..   ..+...........+++++
T Consensus       166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~---~~lt~~~g~~~~p~wSPDG  242 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG---KKILALQGNQLMPTFSPRK  242 (428)
T ss_pred             eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc---eEeecCCCCccceEECCCC
Confidence            455555555555545445556677799999875  2 2444444  466667765432   2233333333345688888


Q ss_pred             CeEEEEEc-CC----eEEEEeCCCCC--CcccccccccceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccc
Q 019384          157 NRLVVATA-GR----HVNVYDLRNMS--QPEQRRESSLKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKY  228 (342)
Q Consensus       157 ~~~~~~s~-d~----~v~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~  228 (342)
                      +.|+..+. ++    .+.+||+..+.  .+.. ............+|+|||+.++..+ .++...+++++....... ..
T Consensus       243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~-lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~-~~  320 (428)
T PRK01029        243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRR-LLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS-PR  320 (428)
T ss_pred             CEEEEEECCCCCcceeEEEeecccCCCCcceE-eecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc-eE
Confidence            88876653 22    24447766431  1111 1111111223568999999877665 456566666665321110 11


Q ss_pred             eeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC---CeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          229 AFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD---GFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       229 ~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D---g~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                      .+..+.         ..+...+|||||+.|+..+.+   ..|++||..+++.. .+......+....|+|||++|+..+.
T Consensus       321 ~lt~~~---------~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        321 LLTKKY---------RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             EeccCC---------CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEEC
Confidence            111110         134567899999988765432   37999999877643 33333445788999999998886554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.01  E-value=1.7e-06  Score=77.55  Aligned_cols=250  Identities=14%  Similarity=0.055  Sum_probs=134.8

Q ss_pred             CcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEec----------CCcEEEEEeccCcee-ecc-c------CCc
Q 019384           41 KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSASA----------DHTVRRLVFSHGKED-ILG-K------HDA  101 (342)
Q Consensus        41 gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~----------D~~i~~w~~~~~~~~-~~~-~------h~~  101 (342)
                      ++|.|.|..+.+.+.++.-......+ ++++++ ++.|..          +..|.+||..+.+.. .+. +      ...
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~  105 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT  105 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence            89999999998877766544333444 777665 445444          678999999988742 111 1      123


Q ss_pred             ceeEEEEeCCCCEEEEee-C-CCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCc
Q 019384          102 PVRCIEYSYAAGQVITGS-W-DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQP  179 (342)
Q Consensus       102 ~V~~~~~~~~~~~l~sgs-~-D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~  179 (342)
                      .-..++++|||+.|+..- . +..+-+.|+.+..-     +.....+.+..-+....+.+.+-+.|+......+......
T Consensus       106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-----v~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~  180 (352)
T TIGR02658       106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-----VRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP  180 (352)
T ss_pred             ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-----EEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCce
Confidence            345789999999887654 3 68999999875432     2211111111111122222222333443333222211110


Q ss_pred             cccccc-------ccceeeEEEEEee-CCceEEEEccCCeEEEEEeechhhhhc--ccceeeeEEecCCCCceeeeeeEE
Q 019384          180 EQRRES-------SLKYQTRCVRCYP-NGTGYALSSVEGRVAMEFFDLSEASQA--KKYAFKCHRKSEAGRDIVYPVNAI  249 (342)
Q Consensus       180 ~~~~~~-------~~~~~~~~v~~~~-~~~~~~~~s~~~~~~i~~~d~~~~~~~--~~~~~~~h~~~~~~~~~~~~v~~v  249 (342)
                      ......       .+..+.   .+.+ ++..+.+... |++  ...|++.....  ..+.+..-.....+.. .+...-+
T Consensus       181 ~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e-G~V--~~id~~~~~~~~~~~~~~~~~~~~~~~wr-P~g~q~i  253 (352)
T TIGR02658       181 KIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT-GKI--FQIDLSSGDAKFLPAIEAFTEAEKADGWR-PGGWQQV  253 (352)
T ss_pred             EEeeeeeecCCccccccCC---ceEcCCCcEEEEecC-CeE--EEEecCCCcceecceeeeccccccccccC-CCcceeE
Confidence            000000       000011   2344 6666655555 655  45775332111  1111110000000000 1123348


Q ss_pred             EEcCCCCeEEEec----------CCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCC-EEEEEE
Q 019384          250 AFHPIYGTFATGG----------CDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGR-LLAVAS  304 (342)
Q Consensus       250 ~~sp~~~~l~sgs----------~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~-~las~s  304 (342)
                      +++|+++.+....          ..+.|.++|..+++.+..+.- ...++.++|||||+ +|.+..
T Consensus       254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn  318 (352)
T TIGR02658       254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALS  318 (352)
T ss_pred             EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeC
Confidence            9999999887743          224799999999998877652 34789999999999 766655

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=1.1e-07  Score=89.30  Aligned_cols=197  Identities=15%  Similarity=0.096  Sum_probs=123.1

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCC---CcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE--EEecCC--cEEEEEec
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWD---KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF--SASADH--TVRRLVFS   89 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~D---gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~--s~s~D~--~i~~w~~~   89 (342)
                      .+...+.+.+|||||++|+..+.+   ..|.+||+.++.........+.+....|+|++..+  +.+.++  .|.++++.
T Consensus       196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~  275 (430)
T PRK00178        196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA  275 (430)
T ss_pred             cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence            445678999999999999877654   36888999877654443344556678899877643  444455  46777888


Q ss_pred             cCceeecccCCcceeEEEEeCCCCEEEEeeC-CC--cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC-
Q 019384           90 HGKEDILGKHDAPVRCIEYSYAAGQVITGSW-DK--SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG-  165 (342)
Q Consensus        90 ~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~-D~--~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d-  165 (342)
                      ++....+..+........|+||++.|+..+. ++  .|.++|+.++..  .. +...........++.+++.++..+.. 
T Consensus       276 ~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~--~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~  352 (430)
T PRK00178        276 SRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA--ER-VTFVGNYNARPRLSADGKTLVMVHRQD  352 (430)
T ss_pred             CCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE--EE-eecCCCCccceEECCCCCEEEEEEccC
Confidence            7776556666666777899999988765543 33  466677654332  11 11111112234577788887766543 


Q ss_pred             C--eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeech
Q 019384          166 R--HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLS  220 (342)
Q Consensus       166 ~--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~  220 (342)
                      +  .|.++|+.++.....  ... . ......++|+|+.++..+. ++...+++++..
T Consensus       353 ~~~~l~~~dl~tg~~~~l--t~~-~-~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        353 GNFHVAAQDLQRGSVRIL--TDT-S-LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             CceEEEEEECCCCCEEEc--cCC-C-CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            2  478889877532111  111 1 1124578999998876654 344556666663

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.00  E-value=4.2e-08  Score=85.55  Aligned_cols=233  Identities=15%  Similarity=0.138  Sum_probs=148.7

Q ss_pred             cCCceEEEEEeCCC--CeEEEe-cCCcEEEEEeccCcee-------ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEc
Q 019384           59 HGGPVLDCCFHDDS--SGFSAS-ADHTVRRLVFSHGKED-------ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD  128 (342)
Q Consensus        59 h~~~V~~~~~~~~~--~~~s~s-~D~~i~~w~~~~~~~~-------~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd  128 (342)
                      -...|..++|..++  .++.+. .|..+...++......       ....-+.+|..++..  +..|++|-.+|.+.+|.
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence            34567788886443  344444 7777776666544311       223345667666553  45788889999999998


Q ss_pred             CCCCCC--cceeeeeecCCCCcEEEEeccCCeEEEEEcC--CeEEEEeCCCCCCccc-------ccccccceeeEEEEEe
Q 019384          129 PRGASG--QERTLVGTYPQPERVYSLSLVGNRLVVATAG--RHVNVYDLRNMSQPEQ-------RRESSLKYQTRCVRCY  197 (342)
Q Consensus       129 ~~~~~~--~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d--~~v~iwd~~~~~~~~~-------~~~~~~~~~~~~v~~~  197 (342)
                      .+.+..  .....+........+-.....++.+++|+..  ..+++||+....+..+       .....++..++.+.|.
T Consensus       132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl  211 (412)
T KOG3881|consen  132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL  211 (412)
T ss_pred             ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence            763321  1111122111111111122234566667777  6799999976532211       1111223345566777


Q ss_pred             eC--CceEEEEccCCeEEEEEeechhhhh-cccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384          198 PN--GTGYALSSVEGRVAMEFFDLSEASQ-AKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       198 ~~--~~~~~~~s~~~~~~i~~~d~~~~~~-~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~  274 (342)
                      +.  ...+++++.-+.+  ++||.+.... ...+.+.           .++++++...|.++++.+|..-|.+..+|.+.
T Consensus       212 ~g~~~~~fat~T~~hqv--R~YDt~~qRRPV~~fd~~-----------E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~  278 (412)
T KOG3881|consen  212 EGSPNYKFATITRYHQV--RLYDTRHQRRPVAQFDFL-----------ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG  278 (412)
T ss_pred             CCCCCceEEEEecceeE--EEecCcccCcceeEeccc-----------cCcceeeeecCCCcEEEEecccchhheecccC
Confidence            76  6778888877765  5699863211 1112111           24799999999999999999999999999999


Q ss_pred             ceeeec-cCCCCcceEEEEECCCCCEEEEEEec
Q 019384          275 KKRLYQ-YSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       275 ~~~~~~-~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      ++.+.. +.+..+.|.++...|.+++||+++-+
T Consensus       279 ~kl~g~~~kg~tGsirsih~hp~~~~las~GLD  311 (412)
T KOG3881|consen  279 GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD  311 (412)
T ss_pred             ceeeccccCCccCCcceEEEcCCCceEEeeccc
Confidence            887754 88999999999999999999999864

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=3.6e-07  Score=83.23  Aligned_cols=267  Identities=15%  Similarity=0.201  Sum_probs=151.9

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCC-----------CcEEEEECCCceeeeeeec---CCceE-EEEEeCCCCeEEEecCC
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWD-----------KSVRLYDASANVLRGEFMH---GGPVL-DCCFHDDSSGFSASADH   81 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~D-----------gti~vwd~~~~~~~~~~~h---~~~V~-~~~~~~~~~~~s~s~D~   81 (342)
                      ...-+|..+.|||..++|+|=|..           ..++|||+.+|.+...+..   ...++ -..|+.++..++.-.-.
T Consensus       247 F~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~  326 (698)
T KOG2314|consen  247 FYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN  326 (698)
T ss_pred             ccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc
Confidence            334689999999999999985532           6789999999876544322   22232 45678677666555557


Q ss_pred             cEEEEEeccCceeeccc---CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCc--------E-
Q 019384           82 TVRRLVFSHGKEDILGK---HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPER--------V-  149 (342)
Q Consensus        82 ~i~~w~~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~--------v-  149 (342)
                      +|.+++...-.  ++.+   --..|....|+|.+..         |..|-.++.....+..+........        | 
T Consensus       327 sisIyEtpsf~--lld~Kslki~gIr~FswsP~~~l---------lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVs  395 (698)
T KOG2314|consen  327 SISIYETPSFM--LLDKKSLKISGIRDFSWSPTSNL---------LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVS  395 (698)
T ss_pred             eEEEEecCcee--eecccccCCccccCcccCCCcce---------EEEEcccccCCcceEEEEecCccceeeeccceeee
Confidence            77788755421  2221   1245788889996544         3455444322211111111111000        1 


Q ss_pred             -EEEec--cCCeEEEEE----------cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc-cCCeEEEE
Q 019384          150 -YSLSL--VGNRLVVAT----------AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS-VEGRVAME  215 (342)
Q Consensus       150 -~~~s~--~~~~~~~~s----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~  215 (342)
                       +.+-+  +|+++..-.          .=..+.|+.++....+....  .++..+..++|-|.|..+++.+ ......+.
T Consensus       396 DckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v--elke~vi~FaWEP~gdkF~vi~g~~~k~tvs  473 (698)
T KOG2314|consen  396 DCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV--ELKESVIAFAWEPHGDKFAVISGNTVKNTVS  473 (698)
T ss_pred             ccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee--ecchheeeeeeccCCCeEEEEEcccccccee
Confidence             11111  334332111          01135667776654443332  3445567788999998887664 44455667


Q ss_pred             EeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEe---cCCCeEEEEeCCCceee-eccCCCCcceEEE
Q 019384          216 FFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATG---GCDGFVNVWDGNNKKRL-YQYSKYPTSIAAL  291 (342)
Q Consensus       216 ~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sg---s~Dg~I~iWd~~~~~~~-~~~~~~~~~V~~v  291 (342)
                      +|-................         ...+.+.|+|.|++++.+   |..|.+..+|.....+. .....|. .-+.+
T Consensus       474 fY~~e~~~~~~~lVk~~dk---------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~v  543 (698)
T KOG2314|consen  474 FYAVETNIKKPSLVKELDK---------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEV  543 (698)
T ss_pred             EEEeecCCCchhhhhhhcc---------cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccc
Confidence            7776531111111000000         136789999999998775   45789999998742221 1223343 34789


Q ss_pred             EECCCCCEEEEEEec
Q 019384          292 SFSRDGRLLAVASSY  306 (342)
Q Consensus       292 ~~spdg~~las~s~~  306 (342)
                      .|.|.|+|++++|+.
T Consensus       544 eWDPtGRYvvT~ss~  558 (698)
T KOG2314|consen  544 EWDPTGRYVVTSSSS  558 (698)
T ss_pred             eECCCCCEEEEeeeh
Confidence            999999999999874

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.96  E-value=1.1e-07  Score=89.01  Aligned_cols=274  Identities=12%  Similarity=0.155  Sum_probs=169.3

Q ss_pred             ccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc----ee------------eeeeecCCceEEEEEeCCCCeE
Q 019384           12 RELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN----VL------------RGEFMHGGPVLDCCFHDDSSGF   75 (342)
Q Consensus        12 ~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~----~~------------~~~~~h~~~V~~~~~~~~~~~~   75 (342)
                      ++++-+-.....+++|+.+..++|.|+.||.++|-.+.+.    ..            .+.-+|++.|.-+.|....+.+
T Consensus         7 kki~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL   86 (1189)
T KOG2041|consen    7 KKIGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL   86 (1189)
T ss_pred             cccCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc
Confidence            4455555667899999999999999999999999997532    11            1223699999999998766666


Q ss_pred             EE-ecCCcEEEEEeccCc--eeeccc-CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeee-ecCC-CCcE
Q 019384           76 SA-SADHTVRRLVFSHGK--EDILGK-HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVG-TYPQ-PERV  149 (342)
Q Consensus        76 s~-s~D~~i~~w~~~~~~--~~~~~~-h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~-~~~v  149 (342)
                      +. -.+|.|.+|.+-.+.  +.++.. -.+.|.++.|+.||+.|+....||.|.+=.++...     +++ ..+. ...-
T Consensus        87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-----IwgKeLkg~~l~h  161 (1189)
T KOG2041|consen   87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-----IWGKELKGQLLAH  161 (1189)
T ss_pred             cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-----ecchhcchheccc
Confidence            54 468899999988776  334433 34668899999999999888888877654433211     000 0000 0111


Q ss_pred             EEEeccCCeEEEEEcCCeEEEEeCCCCCCccccc--c-------cccceeeEEEE--------EeeCCceEEEEccCCeE
Q 019384          150 YSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRR--E-------SSLKYQTRCVR--------CYPNGTGYALSSVEGRV  212 (342)
Q Consensus       150 ~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~--~-------~~~~~~~~~v~--------~~~~~~~~~~~s~~~~~  212 (342)
                      +.++.+.+.++.+-+.|.+.++|....-......  +       ...+..+..+.        .-|+...++++-.+|.+
T Consensus       162 v~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~  241 (1189)
T KOG2041|consen  162 VLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRM  241 (1189)
T ss_pred             eeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCcee
Confidence            2345455566667777889999975421100000  0       00011111222        22566667777777765


Q ss_pred             EEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCC---------eEEEEeCCCceeeeccCC
Q 019384          213 AMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDG---------FVNVWDGNNKKRLYQYSK  283 (342)
Q Consensus       213 ~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg---------~I~iWd~~~~~~~~~~~~  283 (342)
                      .|  .--..+..+-.            .+....+..+.|+++|..||.++.|.         .|..|..- |+.+.+++-
T Consensus       242 Qi--MR~eND~~Pvv------------~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkv  306 (1189)
T KOG2041|consen  242 QI--MRSENDPEPVV------------VDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKV  306 (1189)
T ss_pred             hh--hhhcCCCCCeE------------EecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEec
Confidence            43  11100000000            01112466789999999999988543         45555433 456667776


Q ss_pred             CCcceEEEEECCCCCEEEEEEe
Q 019384          284 YPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       284 ~~~~V~~v~~spdg~~las~s~  305 (342)
                      ....|++++|--.|-.+|.+-.
T Consensus       307 pg~~It~lsWEg~gLriA~Avd  328 (1189)
T KOG2041|consen  307 PGSCITGLSWEGTGLRIAIAVD  328 (1189)
T ss_pred             CCceeeeeEEcCCceEEEEEec
Confidence            6778999999888887776653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.94  E-value=3e-07  Score=76.74  Aligned_cols=200  Identities=16%  Similarity=0.058  Sum_probs=123.1

Q ss_pred             EEEEcC-----CCCeEEEEeCCCcEEEEECCCcee--eeeeecCCceEEEEE-e-CCCCeEEEecCCcEEEEEeccCcee
Q 019384           24 NLRFSN-----HSDHLLVSSWDKSVRLYDASANVL--RGEFMHGGPVLDCCF-H-DDSSGFSASADHTVRRLVFSHGKED   94 (342)
Q Consensus        24 ~l~fs~-----~~~~l~s~s~Dgti~vwd~~~~~~--~~~~~h~~~V~~~~~-~-~~~~~~s~s~D~~i~~w~~~~~~~~   94 (342)
                      .+.|-|     ...+||.|+.-|...+|...+...  ..--.|...|.-+.= . ....++.++.|.++++++++.+..+
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~  151 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK  151 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence            356665     346899999999999999875432  111234443322111 1 1224678999999999998765432


Q ss_pred             ecccCCcc--eeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCC-cceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEE
Q 019384           95 ILGKHDAP--VRCIEYSYAAGQVITGSWDKSLKCWDPRGASG-QERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVY  171 (342)
Q Consensus        95 ~~~~h~~~--V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~-~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iw  171 (342)
                       ...|...  +.++++++|++.+++.+....|-.|.+..... .............-..+++.....++++++||++.||
T Consensus       152 -~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~  230 (344)
T KOG4532|consen  152 -FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIY  230 (344)
T ss_pred             -ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEE
Confidence             2234443  78999999999999999989999997754322 1111122222223334455556689999999999999


Q ss_pred             eCCCCCCcc---cccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh
Q 019384          172 DLRNMSQPE---QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ  224 (342)
Q Consensus       172 d~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~  224 (342)
                      |+|....+-   .....+.++.+..+.|++.|..=+.--.++.-.+.+.|++....
T Consensus       231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN  286 (344)
T ss_pred             EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence            999875542   22223455667777788765431111222333456688765433

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.87  E-value=1.8e-07  Score=78.92  Aligned_cols=178  Identities=17%  Similarity=0.173  Sum_probs=109.4

Q ss_pred             CCCeEEEEEcC---CCC-eEEEEeCCCcEEEEECCCcee----eeeeecCCc---eEEEEEeCCCC-eEEEecCCcEEEE
Q 019384           19 SDGISNLRFSN---HSD-HLLVSSWDKSVRLYDASANVL----RGEFMHGGP---VLDCCFHDDSS-GFSASADHTVRRL   86 (342)
Q Consensus        19 ~~~V~~l~fs~---~~~-~l~s~s~Dgti~vwd~~~~~~----~~~~~h~~~---V~~~~~~~~~~-~~s~s~D~~i~~w   86 (342)
                      ...++.+.|..   +|. .|+-+-.+|.|.++.......    +......-.   -.++.|++.+. +++.-.+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            34455566653   445 566677889999998764321    111111111   23455665444 4555566666533


Q ss_pred             EeccCc---eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeee-ecCCCCcEEEEecc---CCe
Q 019384           87 VFSHGK---EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVG-TYPQPERVYSLSLV---GNR  158 (342)
Q Consensus        87 ~~~~~~---~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~~~~v~~~s~~---~~~  158 (342)
                      +.....   ...+..|.-..+.+.|+... +.++||+.|+.+.-||+|....   ..+. ...+...|+++..+   +..
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~---~i~~n~kvH~~GV~SI~ss~~~~~~  225 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT---FIWHNSKVHTSGVVSIYSSPPKPTY  225 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc---eeeecceeeecceEEEecCCCCCce
Confidence            322222   22567899999999998644 6889999999999999984322   1121 11234456666554   458


Q ss_pred             EEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCc
Q 019384          159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGT  201 (342)
Q Consensus       159 ~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  201 (342)
                      +++|++|..|++||.|+...+.-  ..++.+-+..+..+|...
T Consensus       226 I~TGsYDe~i~~~DtRnm~kPl~--~~~v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  226 IATGSYDECIRVLDTRNMGKPLF--KAKVGGGVWRIKHHPEIF  266 (339)
T ss_pred             EEEeccccceeeeehhcccCccc--cCccccceEEEEecchhh
Confidence            99999999999999998655532  223345566777777543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.87  E-value=5.2e-06  Score=85.48  Aligned_cols=242  Identities=12%  Similarity=0.092  Sum_probs=130.8

Q ss_pred             EEEEEcCC-CCeEEEEeCCCcEEEEECCCceeeeeee--cC------------CceEEEEEeCCC-CeEEEe-cCCcEEE
Q 019384           23 SNLRFSNH-SDHLLVSSWDKSVRLYDASANVLRGEFM--HG------------GPVLDCCFHDDS-SGFSAS-ADHTVRR   85 (342)
Q Consensus        23 ~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~~~~~~~~--h~------------~~V~~~~~~~~~-~~~s~s-~D~~i~~   85 (342)
                      ..+++++. ++.+++-+..+.|++||..+........  ..            ....++++.+++ .++.+- ..+.|+.
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~  650 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE  650 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence            46788875 6677777888999999987543322111  11            124678887554 455543 4567888


Q ss_pred             EEeccCceeecccC-----------------CcceeEEEEeCC-CCEEEEeeCCCcEEEEcCCCCCCcceeeeee-----
Q 019384           86 LVFSHGKEDILGKH-----------------DAPVRCIEYSYA-AGQVITGSWDKSLKCWDPRGASGQERTLVGT-----  142 (342)
Q Consensus        86 w~~~~~~~~~~~~h-----------------~~~V~~~~~~~~-~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~-----  142 (342)
                      +++.++...++.+-                 -..-+.++++|+ +..+++.+.++.|++||..++..  ......     
T Consensus       651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v--~~~~G~G~~~~  728 (1057)
T PLN02919        651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT--RVFSGDGYERN  728 (1057)
T ss_pred             EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE--EEEecCCcccc
Confidence            88877654433210                 012357899994 55567778889999999764321  000000     


Q ss_pred             ----------cCCCCcEEEEeccCCeEE-EEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC--
Q 019384          143 ----------YPQPERVYSLSLVGNRLV-VATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE--  209 (342)
Q Consensus       143 ----------~~~~~~v~~~s~~~~~~~-~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~--  209 (342)
                                ... ..-+.++.+++.++ +-+.++.|++||+.++...                       ++.+...  
T Consensus       729 ~~g~~~~~~~~~~-P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~-----------------------~~~gg~~~~  784 (1057)
T PLN02919        729 LNGSSGTSTSFAQ-PSGISLSPDLKELYIADSESSSIRALDLKTGGSR-----------------------LLAGGDPTF  784 (1057)
T ss_pred             CCCCccccccccC-ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE-----------------------EEEeccccc
Confidence                      000 01123344444333 3344456666766543100                       0000000  


Q ss_pred             CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeecc--------
Q 019384          210 GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQY--------  281 (342)
Q Consensus       210 ~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~--------  281 (342)
                      ......+.+......  .             ........++++++|..+++-+.+++|++||..++......        
T Consensus       785 ~~~l~~fG~~dG~g~--~-------------~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~  849 (1057)
T PLN02919        785 SDNLFKFGDHDGVGS--E-------------VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFK  849 (1057)
T ss_pred             CcccccccCCCCchh--h-------------hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCC
Confidence            000000000000000  0             00001347899999999999999999999999876543211        


Q ss_pred             -----CCCCcceEEEEECCCCCEEEEEEe
Q 019384          282 -----SKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       282 -----~~~~~~V~~v~~spdg~~las~s~  305 (342)
                           .........|++++||+++++-+.
T Consensus       850 dG~~~~a~l~~P~GIavd~dG~lyVaDt~  878 (1057)
T PLN02919        850 DGKALKAQLSEPAGLALGENGRLFVADTN  878 (1057)
T ss_pred             CCcccccccCCceEEEEeCCCCEEEEECC
Confidence                 112235689999999997765443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.85  E-value=2.5e-07  Score=79.62  Aligned_cols=155  Identities=18%  Similarity=0.292  Sum_probs=106.1

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-----eeeeeeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccC-
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-----VLRGEFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHG-   91 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-----~~~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~-   91 (342)
                      ...++++.+.++..+|..|-..|++.=+-++..     .++....|...|.++.|+ +...+++++-|.-+.-.-.+.+ 
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~  147 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN  147 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence            357889999999999999999999988887532     234445788899888887 4445567776654421111100 


Q ss_pred             ----------------------------c-------------eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCC
Q 019384           92 ----------------------------K-------------EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR  130 (342)
Q Consensus        92 ----------------------------~-------------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~  130 (342)
                                                  .             ...+.+|.+.+.+++|.+...+|.+|+.|..+.+||+.
T Consensus       148 ~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig  227 (404)
T KOG1409|consen  148 RLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG  227 (404)
T ss_pred             cccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence                                        0             01245799999999999988999999999999999986


Q ss_pred             CCCCcceeeeeecCCCCcEEEEecc--CCeEEEEEcCCeEEEEeCCCC
Q 019384          131 GASGQERTLVGTYPQPERVYSLSLV--GNRLVVATAGRHVNVYDLRNM  176 (342)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~d~~v~iwd~~~~  176 (342)
                      ...+..   .....+...+-.++.-  -..+.++..|+.|.+||+...
T Consensus       228 g~~g~~---~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  228 GRKGTA---YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             CCccee---eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            433321   1111222333334332  347889999999999998754

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.85  E-value=1.4e-06  Score=80.30  Aligned_cols=254  Identities=15%  Similarity=0.075  Sum_probs=139.4

Q ss_pred             CCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecccCCcce------
Q 019384           30 HSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPV------  103 (342)
Q Consensus        30 ~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V------  103 (342)
                      ++..++.++.|+.+..+|..+++++......+.+.+.....++.++.++.++.+..+|..+++..-........      
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~  183 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS  183 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence            45677888899999999998887665544444443322224566777888999999998877643111111111      


Q ss_pred             eEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC---c---E-EEEeccCCeEEEEEcCCeEEEEeCCCC
Q 019384          104 RCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE---R---V-YSLSLVGNRLVVATAGRHVNVYDLRNM  176 (342)
Q Consensus       104 ~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~---~---v-~~~s~~~~~~~~~s~d~~v~iwd~~~~  176 (342)
                      .+....  ++.++.++.++.+..+|++++...............   .   + ......++.+++++.++.+..||..++
T Consensus       184 ~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG  261 (377)
T TIGR03300       184 ASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG  261 (377)
T ss_pred             CCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence            011111  346778888899999998765421111010000000   0   0 011123567888888999999999877


Q ss_pred             CCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC
Q 019384          177 SQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG  256 (342)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~  256 (342)
                      +..-...   ... ...  ....+..+++++.++.+  ..+|..+...  .|....   .. . .   ...+...  .+.
T Consensus       262 ~~~W~~~---~~~-~~~--p~~~~~~vyv~~~~G~l--~~~d~~tG~~--~W~~~~---~~-~-~---~~ssp~i--~g~  321 (377)
T TIGR03300       262 RVLWKRD---ASS-YQG--PAVDDNRLYVTDADGVV--VALDRRSGSE--LWKNDE---LK-Y-R---QLTAPAV--VGG  321 (377)
T ss_pred             cEEEeec---cCC-ccC--ceEeCCEEEEECCCCeE--EEEECCCCcE--EEcccc---cc-C-C---ccccCEE--ECC
Confidence            4322111   100 011  11234556667767754  4577643322  121110   00 0 0   0111111  367


Q ss_pred             eEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          257 TFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       257 ~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      .|++++.||.|+++|.++++.+.+++.+...+..--...+++++ .++.+
T Consensus       322 ~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~-v~~~d  370 (377)
T TIGR03300       322 YLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLL-VQTRD  370 (377)
T ss_pred             EEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEE-EEeCC
Confidence            88899999999999999999888776555443333233445543 44433

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.83  E-value=6.8e-08  Score=88.15  Aligned_cols=165  Identities=16%  Similarity=0.218  Sum_probs=114.8

Q ss_pred             cCCCCCCCccCCCC--CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee-------ecCC-----ceEEEEEe
Q 019384            4 VHPPPTSGRELGNP--PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF-------MHGG-----PVLDCCFH   69 (342)
Q Consensus         4 ~~~~~~~~~~~~~~--~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~-------~h~~-----~V~~~~~~   69 (342)
                      |--|..+|+.|...  .+.+++++..++.-.+|+.|..||+|..||.........+       .|.+     .|+++.|.
T Consensus       158 YRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~  237 (703)
T KOG2321|consen  158 YRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR  237 (703)
T ss_pred             EEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEec
Confidence            34467889999843  3579999999998889999999999999998654322221       2333     39999999


Q ss_pred             CCCC-eEEEecCCcEEEEEeccCceeecccCC--cceeEEEEeCCC--CEEEEeeCCCcEEEEcCCCCCCcceeeeeecC
Q 019384           70 DDSS-GFSASADHTVRRLVFSHGKEDILGKHD--APVRCIEYSYAA--GQVITGSWDKSLKCWDPRGASGQERTLVGTYP  144 (342)
Q Consensus        70 ~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~h~--~~V~~~~~~~~~--~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~  144 (342)
                      +++. +..|+.+|.+.++|+.+........|.  -+|..++|.+.+  ..++|. ....++|||..++..     +...+
T Consensus       238 d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~-----~asiE  311 (703)
T KOG2321|consen  238 DDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKP-----MASIE  311 (703)
T ss_pred             CCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCc-----eeecc
Confidence            7664 457889999999999998877777776  468899997753  345543 335789999765443     12222


Q ss_pred             CCCcEEEEe--ccCCeEEEEEcCCeEEEEeCC
Q 019384          145 QPERVYSLS--LVGNRLVVATAGRHVNVYDLR  174 (342)
Q Consensus       145 ~~~~v~~~s--~~~~~~~~~s~d~~v~iwd~~  174 (342)
                      ....+..++  ++...+++|-.+..+..|=+.
T Consensus       312 pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  312 PTSDLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             ccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence            222233344  445577788777777766554

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.83  E-value=2.6e-05  Score=70.85  Aligned_cols=250  Identities=16%  Similarity=0.153  Sum_probs=138.9

Q ss_pred             CCeEEEEEcCCCCeEEEEeC----CCcEEEEECCC--cee--eeeee-cCCceEEEEEeCCCCe-EEEe-cCCcEEEEEe
Q 019384           20 DGISNLRFSNHSDHLLVSSW----DKSVRLYDASA--NVL--RGEFM-HGGPVLDCCFHDDSSG-FSAS-ADHTVRRLVF   88 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~----Dgti~vwd~~~--~~~--~~~~~-h~~~V~~~~~~~~~~~-~s~s-~D~~i~~w~~   88 (342)
                      .....|+++|++++|.+...    ++.|..|++..  +.+  +.... .......+++.+++.. +++. .++.+.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            44567889999999988766    57999999865  333  22222 3344456778777665 4554 4889999998


Q ss_pred             ccC-cee----ec----------ccCCcceeEEEEeCCCCEEEEee-CCCcEEEEcCCCCCCccee--eeeecC-CCCcE
Q 019384           89 SHG-KED----IL----------GKHDAPVRCIEYSYAAGQVITGS-WDKSLKCWDPRGASGQERT--LVGTYP-QPERV  149 (342)
Q Consensus        89 ~~~-~~~----~~----------~~h~~~V~~~~~~~~~~~l~sgs-~D~~I~iWd~~~~~~~~~~--~~~~~~-~~~~v  149 (342)
                      ... ...    .+          .+-.....++.++|++++++... ....|.+|++.........  .+.... ...+-
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            763 211    11          11234477999999999876643 3347999988654421111  111111 12234


Q ss_pred             EEEeccCCeEEE-EEcCCeEEEEeCCCCCCc--cccccc----ccc--eeeEEEEEeeCCceEEEEccCCeEEEEEeech
Q 019384          150 YSLSLVGNRLVV-ATAGRHVNVYDLRNMSQP--EQRRES----SLK--YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLS  220 (342)
Q Consensus       150 ~~~s~~~~~~~~-~s~d~~v~iwd~~~~~~~--~~~~~~----~~~--~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~  220 (342)
                      ..|+.+++.+.+ .-.+++|.++++....-.  ......    ...  .....+.++|+++.+.++....+ .|.+|++.
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~-sI~vf~~d  275 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN-SISVFDLD  275 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT-EEEEEEEC
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC-EEEEEEEe
Confidence            556666666544 455678999988722111  000000    011  13567889999998877654332 33457763


Q ss_pred             hhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEec-CCCeEEEEeC--CCcee
Q 019384          221 EASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGG-CDGFVNVWDG--NNKKR  277 (342)
Q Consensus       221 ~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs-~Dg~I~iWd~--~~~~~  277 (342)
                      .......  ....... .+.    ..+.++++|+|++|+++. .++.|.+|++  +++.+
T Consensus       276 ~~~g~l~--~~~~~~~-~G~----~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l  328 (345)
T PF10282_consen  276 PATGTLT--LVQTVPT-GGK----FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL  328 (345)
T ss_dssp             TTTTTEE--EEEEEEE-SSS----SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             cCCCceE--EEEEEeC-CCC----CccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence            2211111  1111111 010    256799999999987665 6679999976  45554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.80  E-value=5e-08  Score=83.86  Aligned_cols=200  Identities=13%  Similarity=0.275  Sum_probs=119.1

Q ss_pred             CcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCC-Cc--ceeeeeecC----------CCCcEEEEec----cCCeEEEE
Q 019384          100 DAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS-GQ--ERTLVGTYP----------QPERVYSLSL----VGNRLVVA  162 (342)
Q Consensus       100 ~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~-~~--~~~~~~~~~----------~~~~v~~~s~----~~~~~~~~  162 (342)
                      .+.|.++.|...|.+|+||..+|.+-++.-.... .+  ....++.+.          ...++..+-+    ....++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            3568899999999999999999999999643211 11  111111111          1122333333    23478889


Q ss_pred             EcCCeEEEEeCCCCCC----------------------------------cccccccccceeeEEEEEeeCCceEEEEcc
Q 019384          163 TAGRHVNVYDLRNMSQ----------------------------------PEQRRESSLKYQTRCVRCYPNGTGYALSSV  208 (342)
Q Consensus       163 s~d~~v~iwd~~~~~~----------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~  208 (342)
                      +.|++|++|.++....                                  +.+.....+.++++++++..|...+++ +.
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS-AD  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS-AD  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee-cc
Confidence            9999999998764211                                  011223345677888888888776654 34


Q ss_pred             CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC-CCeEEEecCCCeEEEEeCCCce------eeec-
Q 019384          209 EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI-YGTFATGGCDGFVNVWDGNNKK------RLYQ-  280 (342)
Q Consensus       209 ~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~-~~~l~sgs~Dg~I~iWd~~~~~------~~~~-  280 (342)
                      |-  +|.+|++.-..  +.+.+..=.. ..-.+....|++..|||. ..+++-.+..|+|++-|++...      .+.. 
T Consensus       184 dL--RINLWnlei~d--~sFnIVDIKP-~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe  258 (433)
T KOG1354|consen  184 DL--RINLWNLEIID--QSFNIVDIKP-ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE  258 (433)
T ss_pred             ce--eeeeccccccC--CceeEEEccc-cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence            44  44567764221  1121111000 000122335788899997 4567888899999999987311      1111 


Q ss_pred             ---------cCCCCcceEEEEECCCCCEEEEEEe
Q 019384          281 ---------YSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       281 ---------~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                               +.+--+.|.++.||++|+|+++=+.
T Consensus       259 pedp~~rsffseiIsSISDvKFs~sGryilsRDy  292 (433)
T KOG1354|consen  259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY  292 (433)
T ss_pred             ccCCcchhhHHHHhhhhhceEEccCCcEEEEecc
Confidence                     1122357899999999999998664

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.79  E-value=7.2e-05  Score=65.33  Aligned_cols=262  Identities=13%  Similarity=0.111  Sum_probs=151.0

Q ss_pred             CCcEEEEECCC--ce--eeeeeecCCceEEEEEeCCCC-eEEEec---CCcEEEEEecc--Cceeecc---cCCcceeEE
Q 019384           40 DKSVRLYDASA--NV--LRGEFMHGGPVLDCCFHDDSS-GFSASA---DHTVRRLVFSH--GKEDILG---KHDAPVRCI  106 (342)
Q Consensus        40 Dgti~vwd~~~--~~--~~~~~~h~~~V~~~~~~~~~~-~~s~s~---D~~i~~w~~~~--~~~~~~~---~h~~~V~~~  106 (342)
                      ++-|.+|++.+  ++  ...+..+.+.++-++|.++++ ++++-.   ++.+..+.++.  ++...+.   .-..+-..+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            56799999863  22  333445777888899987764 556544   46677777665  3322221   112233778


Q ss_pred             EEeCCCCEEEEeeCC-CcEEEEcCCCCCCcceeeeeecCCC------------CcEEEEeccCCeEEEEEcC-CeEEEEe
Q 019384          107 EYSYAAGQVITGSWD-KSLKCWDPRGASGQERTLVGTYPQP------------ERVYSLSLVGNRLVVATAG-RHVNVYD  172 (342)
Q Consensus       107 ~~~~~~~~l~sgs~D-~~I~iWd~~~~~~~~~~~~~~~~~~------------~~v~~~s~~~~~~~~~s~d-~~v~iwd  172 (342)
                      ++++++++++++... +.|.++-++.. +......+...+.            .-...+.++++.+++..-+ .+|.+|+
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~  173 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD  173 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence            899999998887665 68999987642 2111111111110            1123466666666665433 4699999


Q ss_pred             CCCCCCcccc-cccccceeeEEEEEeeCCceEE-EEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384          173 LRNMSQPEQR-RESSLKYQTRCVRCYPNGTGYA-LSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA  250 (342)
Q Consensus       173 ~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  250 (342)
                      +..+...... .......-..-+.|+|+++... +...+++|.++-+|.....   .-.++.+........-.....+|.
T Consensus       174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~---~~~lQ~i~tlP~dF~g~~~~aaIh  250 (346)
T COG2706         174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK---FEELQTIDTLPEDFTGTNWAAAIH  250 (346)
T ss_pred             cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce---EEEeeeeccCccccCCCCceeEEE
Confidence            9865432111 1111223356688999999764 4457787776555543111   111222222111111122467789


Q ss_pred             EcCCCCeEEEec-CCCeEEEEeCCC--cee--eeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          251 FHPIYGTFATGG-CDGFVNVWDGNN--KKR--LYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       251 ~sp~~~~l~sgs-~Dg~I~iWd~~~--~~~--~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                      .+|||++|..+- -...|-++.+..  +++  +.....+...-....|+|+|++|+++..
T Consensus       251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence            999999987653 223788887653  332  2223334334589999999999998764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.79  E-value=2e-07  Score=81.77  Aligned_cols=156  Identities=16%  Similarity=0.105  Sum_probs=101.8

Q ss_pred             CeEEEEEcCCCCeEEEEeCCCcEEEEECCCc----eeeeeeecCCceEEEEEe-CCCCeE---EEecCCcEEEEEeccCc
Q 019384           21 GISNLRFSNHSDHLLVSSWDKSVRLYDASAN----VLRGEFMHGGPVLDCCFH-DDSSGF---SASADHTVRRLVFSHGK   92 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~----~~~~~~~h~~~V~~~~~~-~~~~~~---s~s~D~~i~~w~~~~~~   92 (342)
                      .+..+..++.+++||.+-.++...+++....    +++...--...-+++.|. .+...+   .++....+.+|....+.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            4456667788888888877777767776432    222222222333455554 333333   33444455566555555


Q ss_pred             eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC-eEEEEEcCCeEEEE
Q 019384           93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN-RLVVATAGRHVNVY  171 (342)
Q Consensus        93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~-~~~~~s~d~~v~iw  171 (342)
                      .+.+-+|-..++.++++||++.|+|+.-|..||+-......-....++   .|..-|-.++...+ .++++++|+++++|
T Consensus       144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl---GH~eFVS~isl~~~~~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL---GHKEFVSTISLTDNYLLLSGSGDKTLRLW  220 (390)
T ss_pred             cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc---ccHhheeeeeeccCceeeecCCCCcEEEE
Confidence            667789999999999999999999999999999865432111111111   24444556666444 57999999999999


Q ss_pred             eCCCCCCc
Q 019384          172 DLRNMSQP  179 (342)
Q Consensus       172 d~~~~~~~  179 (342)
                      |+++++.+
T Consensus       221 d~~sgk~L  228 (390)
T KOG3914|consen  221 DITSGKLL  228 (390)
T ss_pred             ecccCCcc
Confidence            99998764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.73  E-value=1.4e-05  Score=69.68  Aligned_cols=216  Identities=16%  Similarity=0.151  Sum_probs=128.9

Q ss_pred             CCcEEEEEeccCce----eecccCCcceeEEEEeCCCCEEEEeeCC---CcEEEEcCCCCCCcceeeeee---cCCCCcE
Q 019384           80 DHTVRRLVFSHGKE----DILGKHDAPVRCIEYSYAAGQVITGSWD---KSLKCWDPRGASGQERTLVGT---YPQPERV  149 (342)
Q Consensus        80 D~~i~~w~~~~~~~----~~~~~h~~~V~~~~~~~~~~~l~sgs~D---~~I~iWd~~~~~~~~~~~~~~---~~~~~~v  149 (342)
                      ++-|..|++.+...    ..+..+....+-++|+|+++.|+++-.+   +.|..|.++...+.. ..+..   ...+.+-
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln~~~~~g~~p~y   93 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLNRQTLPGSPPCY   93 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEeeccccCCCCCeE
Confidence            45688898875432    2234566788899999999999887554   677776654322211 11211   1122245


Q ss_pred             EEEeccCCeEEEEEcC-CeEEEEeCCCCCCcc---ccccccc--------ceeeEEEEEeeCCceEEEEccCCeEEEEEe
Q 019384          150 YSLSLVGNRLVVATAG-RHVNVYDLRNMSQPE---QRRESSL--------KYQTRCVRCYPNGTGYALSSVEGRVAMEFF  217 (342)
Q Consensus       150 ~~~s~~~~~~~~~s~d-~~v~iwd~~~~~~~~---~~~~~~~--------~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~  217 (342)
                      ++++.++..++++.+. +.|.++-++..-...   +...+..        ..+.-+..+.|+++.+++.....+ ++.+|
T Consensus        94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y  172 (346)
T COG2706          94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLY  172 (346)
T ss_pred             EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEE
Confidence            5677777777777665 679998886521110   1000000        011334567899998888776554 56778


Q ss_pred             echhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeE-EEecCCCeEEEEeCCCc----eeeeccC----CC--Cc
Q 019384          218 DLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTF-ATGGCDGFVNVWDGNNK----KRLYQYS----KY--PT  286 (342)
Q Consensus       218 d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l-~sgs~Dg~I~iWd~~~~----~~~~~~~----~~--~~  286 (342)
                      ++.+........  ..-+  .+.    .-+-|+|||++++. +.+=.+++|-+|..++.    +.++.+.    ..  ..
T Consensus       173 ~~~dg~L~~~~~--~~v~--~G~----GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~  244 (346)
T COG2706         173 DLDDGKLTPADP--AEVK--PGA----GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN  244 (346)
T ss_pred             EcccCccccccc--cccC--CCC----CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence            886432221111  1111  111    24568999999975 55667999999998763    2233221    12  34


Q ss_pred             ceEEEEECCCCCEEEEEEe
Q 019384          287 SIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       287 ~V~~v~~spdg~~las~s~  305 (342)
                      ...++..+|||++|-++-.
T Consensus       245 ~~aaIhis~dGrFLYasNR  263 (346)
T COG2706         245 WAAAIHISPDGRFLYASNR  263 (346)
T ss_pred             ceeEEEECCCCCEEEEecC
Confidence            6788999999999987654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.72  E-value=5.2e-07  Score=76.79  Aligned_cols=244  Identities=18%  Similarity=0.269  Sum_probs=146.2

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-----eeeee-eecC------------CceEEEEEeCCC---CeEE
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-----VLRGE-FMHG------------GPVLDCCFHDDS---SGFS   76 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-----~~~~~-~~h~------------~~V~~~~~~~~~---~~~s   76 (342)
                      ..+-|++|-|...|.+|++|...|+|-+|.-...     +..++ .+|.            ..|..+.|..+.   .++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            3578999999999999999988899999986432     12222 2332            357888887443   3567


Q ss_pred             EecCCcEEEEEeccCcee-------------------------------------------ec-ccCCcceeEEEEeCCC
Q 019384           77 ASADHTVRRLVFSHGKED-------------------------------------------IL-GKHDAPVRCIEYSYAA  112 (342)
Q Consensus        77 ~s~D~~i~~w~~~~~~~~-------------------------------------------~~-~~h~~~V~~~~~~~~~  112 (342)
                      .+.|.+|++|-+..+...                                           .. ..|.--|+++.|+.|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            889999999987544100                                           00 1355668889998877


Q ss_pred             CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCC-----CcEEEEeccC---CeEEEEEcCCeEEEEeCCCCCCcccccc
Q 019384          113 GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQP-----ERVYSLSLVG---NRLVVATAGRHVNVYDLRNMSQPEQRRE  184 (342)
Q Consensus       113 ~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~-----~~v~~~s~~~---~~~~~~s~d~~v~iwd~~~~~~~~~~~~  184 (342)
                      +.++| +.|=.|.+|+++...+. ..++...++.     .-+.+-.+.+   +.+...+..|+|++-|+|.......   
T Consensus       185 et~lS-aDdLrINLWnl~i~D~s-FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn---  259 (460)
T COG5170         185 ETLLS-ADDLRINLWNLEIIDGS-FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN---  259 (460)
T ss_pred             heeee-ccceeeeeccccccCCc-eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC---
Confidence            66665 56789999998743331 1222211110     0111222222   3566677778899999875321000   


Q ss_pred             cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC
Q 019384          185 SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD  264 (342)
Q Consensus       185 ~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D  264 (342)
                       +     .        ..+. -..|+. ..-++.                      .....|+.+.|+++|+++++-+. 
T Consensus       260 -~-----~--------klfe-~~~D~v-~~~ff~----------------------eivsSISD~kFs~ngryIlsRdy-  300 (460)
T COG5170         260 -S-----K--------KLFE-LTIDGV-DVDFFE----------------------EIVSSISDFKFSDNGRYILSRDY-  300 (460)
T ss_pred             -c-----h--------hhhh-hccCcc-cchhHH----------------------HHhhhhcceEEcCCCcEEEEecc-
Confidence             0     0        0000 000000 000000                      11125788999999999988765 


Q ss_pred             CeEEEEeCCC-ceeeeccCCC------------Ccce---EEEEECCCCCEEEEEEe
Q 019384          265 GFVNVWDGNN-KKRLYQYSKY------------PTSI---AALSFSRDGRLLAVASS  305 (342)
Q Consensus       265 g~I~iWd~~~-~~~~~~~~~~------------~~~V---~~v~~spdg~~las~s~  305 (342)
                      -+|+|||++. ..++.+...|            ...|   ..+.||-|.+.+.+||.
T Consensus       301 ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy  357 (460)
T COG5170         301 LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY  357 (460)
T ss_pred             ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc
Confidence            4899999874 3345544322            1222   56899999999999986

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.66  E-value=2.9e-07  Score=86.51  Aligned_cols=272  Identities=15%  Similarity=0.206  Sum_probs=159.4

Q ss_pred             CCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-eeeeeeecCCc--eEEEEEeC---CCCeEEEecCC
Q 019384            8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-VLRGEFMHGGP--VLDCCFHD---DSSGFSASADH   81 (342)
Q Consensus         8 ~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-~~~~~~~h~~~--V~~~~~~~---~~~~~s~s~D~   81 (342)
                      |+-|+.|--.-..++.++..+|-|+-+|.++.-| +.+-|+... .....+-|..+  |-.+.|++   ....+.....+
T Consensus        13 ~tf~kslsl~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~q   91 (1081)
T KOG0309|consen   13 PTFGKSLSLKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQ   91 (1081)
T ss_pred             CccCceeEEEecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcc
Confidence            6667778777788999999999999998887776 455577653 22223335443  45666763   22344433444


Q ss_pred             cEEEEEeccCc----eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC
Q 019384           82 TVRRLVFSHGK----EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG  156 (342)
Q Consensus        82 ~i~~w~~~~~~----~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~  156 (342)
                      .-.+|.+....    +.++-+|+.+|+.+.|+|.. ..+++++.|-.+-.||+++.....-. .........-+.+....
T Consensus        92 kaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys-~~~w~s~asqVkwnyk~  170 (1081)
T KOG0309|consen   92 KAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS-TSSWRSAASQVKWNYKD  170 (1081)
T ss_pred             hhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee-eecccccCceeeecccC
Confidence            44578775543    45678999999999999866 57899999999999999875432111 11111222233455533


Q ss_pred             CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEE---EEEee-CCceEEEEccCCeEEEEEeechhhhhcccceeee
Q 019384          157 NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRC---VRCYP-NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKC  232 (342)
Q Consensus       157 ~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~---v~~~~-~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~  232 (342)
                      -.+++.+-++.|++||++.+..+....    +.++..   +.+.. .-..+...+.|+++  ++||.........+....
T Consensus       171 p~vlasshg~~i~vwd~r~gs~pl~s~----K~~vs~vn~~~fnr~~~s~~~s~~~d~tv--kfw~y~kSt~e~~~~vtt  244 (1081)
T KOG0309|consen  171 PNVLASSHGNDIFVWDLRKGSTPLCSL----KGHVSSVNSIDFNRFKYSEIMSSSNDGTV--KFWDYSKSTTESKRTVTT  244 (1081)
T ss_pred             cchhhhccCCceEEEeccCCCcceEEe----cccceeeehHHHhhhhhhhhcccCCCCce--eeecccccccccceeccc
Confidence            345556777889999999887653322    222222   22211 11235666777765  568875433222221111


Q ss_pred             EEecCCCCceeeeeeEEEEcCCCCeEEE--ecCCCeEEEEeCC---------C-ceeeeccCCCCcceEEEEECCCC
Q 019384          233 HRKSEAGRDIVYPVNAIAFHPIYGTFAT--GGCDGFVNVWDGN---------N-KKRLYQYSKYPTSIAALSFSRDG  297 (342)
Q Consensus       233 h~~~~~~~~~~~~v~~v~~sp~~~~l~s--gs~Dg~I~iWd~~---------~-~~~~~~~~~~~~~V~~v~~spdg  297 (342)
                                .++|.--+|-|-|+-+++  .--+..+.+++.+         + .+.+..|.||...|....|-..+
T Consensus       245 ----------~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~  311 (1081)
T KOG0309|consen  245 ----------NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRK  311 (1081)
T ss_pred             ----------cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcc
Confidence                      124555555555442222  1112245555433         2 34577888998888766665433

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=4.1e-08  Score=89.26  Aligned_cols=180  Identities=15%  Similarity=0.177  Sum_probs=107.5

Q ss_pred             ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCc---ceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEE
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ---ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVY  171 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~---~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iw  171 (342)
                      .+.+|+..|+.++-..+.+.++++|.|+++|+|.++...-.   ....+....+...+.++-+-.+.-.+++.|+.|.+|
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlW  809 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLW  809 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceee
Confidence            46799999998876666778999999999999988642110   001112222344454554444433557888999999


Q ss_pred             eCCCCCCcccccccccceeeEEEEEeeC-CceEE--EEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384          172 DLRNMSQPEQRRESSLKYQTRCVRCYPN-GTGYA--LSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA  248 (342)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  248 (342)
                      |--.+....+....+-.....-+.+.++ ...++  .++...++  +++|.+.......+...      +......-+++
T Consensus       810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTV--Kl~DaRsce~~~E~kVc------na~~Pna~~R~  881 (1034)
T KOG4190|consen  810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTV--KLFDARSCEWTCELKVC------NAPGPNALTRA  881 (1034)
T ss_pred             cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhh--eeeecccccceeeEEec------cCCCCchheeE
Confidence            9654432222221111112223333443 23333  33455544  56888654433332211      11111124788


Q ss_pred             EEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC
Q 019384          249 IAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS  282 (342)
Q Consensus       249 v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  282 (342)
                      ++.-|.|++++.|-..|.|-+-|.++++.+..+.
T Consensus       882 iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  882 IAVADKGNKLAAALSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             EEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence            9999999999999999999999999998766443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=5.2e-07  Score=82.26  Aligned_cols=161  Identities=19%  Similarity=0.206  Sum_probs=109.6

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-------ee-eeeeecCCceEEEEEeCCCCeEEEecCCcEEEEE
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-------VL-RGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLV   87 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-------~~-~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~   87 (342)
                      .+|.+.|.+++--.+.+.++++|.|+||++|.+...       .+ .+...|+.+|.++.|..+.+ ..++.|+.+.+||
T Consensus       732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~ScD~giHlWD  810 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASCDGGIHLWD  810 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeeccCcceeec
Confidence            367788888877778889999999999999998531       12 33347999999999975543 5667899999999


Q ss_pred             eccCcee--ec----ccCCcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCCCcceeeeeecCC---CCcEEEEeccCC
Q 019384           88 FSHGKED--IL----GKHDAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGASGQERTLVGTYPQ---PERVYSLSLVGN  157 (342)
Q Consensus        88 ~~~~~~~--~~----~~h~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~---~~~v~~~s~~~~  157 (342)
                      .--++..  +.    .+-...|.|+.-. +...+ +-|+.+.++|++|.+.+.-.....+-....   ..+...+...|+
T Consensus       811 PFigr~Laq~~dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN  889 (1034)
T KOG4190|consen  811 PFIGRLLAQMEDAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGN  889 (1034)
T ss_pred             ccccchhHhhhcCcccCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcc
Confidence            6544421  11    1223456666432 33344 445889999999988654221111111112   234455666788


Q ss_pred             eEEEEEcCCeEEEEeCCCCCC
Q 019384          158 RLVVATAGRHVNVYDLRNMSQ  178 (342)
Q Consensus       158 ~~~~~s~d~~v~iwd~~~~~~  178 (342)
                      .++.+-..|+|.+.|.|++..
T Consensus       890 ~lAa~LSnGci~~LDaR~G~v  910 (1034)
T KOG4190|consen  890 KLAAALSNGCIAILDARNGKV  910 (1034)
T ss_pred             hhhHHhcCCcEEEEecCCCce
Confidence            999999999999999999863

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.64  E-value=2.1e-05  Score=72.44  Aligned_cols=232  Identities=18%  Similarity=0.101  Sum_probs=127.5

Q ss_pred             CCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEe
Q 019384           30 HSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYS  109 (342)
Q Consensus        30 ~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~  109 (342)
                      .++++..++.+|.+.-+|..+++.+....-.+.+.+.-...++.++.++.++.+..+|..+++..-...-...+.+....
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v  143 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV  143 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE
Confidence            35688889999999999998887665443333433222234667788889999999998887743211111222221111


Q ss_pred             CCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCc---EEEEeccCCeEEEEEcCCeEEEEeCCCCCCccccccc-
Q 019384          110 YAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPER---VYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRES-  185 (342)
Q Consensus       110 ~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~---v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~-  185 (342)
                       .++.++.++.|+.|..||.+++...  ...........   ..+....++.++.++.++.+..+|+++++...+.... 
T Consensus       144 -~~~~v~v~~~~g~l~a~d~~tG~~~--W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~  220 (377)
T TIGR03300       144 -ANGLVVVRTNDGRLTALDAATGERL--WTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVAL  220 (377)
T ss_pred             -ECCEEEEECCCCeEEEEEcCCCcee--eEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence             2456777888999999998765431  11110000000   0011112356777888889999999887533211100 


Q ss_pred             ccc-ee---eEEEEEee--CCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEE
Q 019384          186 SLK-YQ---TRCVRCYP--NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFA  259 (342)
Q Consensus       186 ~~~-~~---~~~v~~~~--~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~  259 (342)
                      ... ..   ...+...|  .+..+++++.++.+  +.+|..+..  ..|....      .     .....+  .++..++
T Consensus       221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l--~a~d~~tG~--~~W~~~~------~-----~~~~p~--~~~~~vy  283 (377)
T TIGR03300       221 PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRV--AALDLRSGR--VLWKRDA------S-----SYQGPA--VDDNRLY  283 (377)
T ss_pred             CCCCCchhhhhccCCccEEECCEEEEEEcCCEE--EEEECCCCc--EEEeecc------C-----CccCce--EeCCEEE
Confidence            000 00   00000011  23456666666654  457764332  2222110      0     011111  2467788


Q ss_pred             EecCCCeEEEEeCCCceeeecc
Q 019384          260 TGGCDGFVNVWDGNNKKRLYQY  281 (342)
Q Consensus       260 sgs~Dg~I~iWd~~~~~~~~~~  281 (342)
                      .++.||.|+.+|..+++.+.+.
T Consensus       284 v~~~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       284 VTDADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             EECCCCeEEEEECCCCcEEEcc
Confidence            8889999999999998877655

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.62  E-value=4.5e-06  Score=76.71  Aligned_cols=174  Identities=18%  Similarity=0.129  Sum_probs=114.4

Q ss_pred             cCCCCeEEEEeCCCcEEEEECCCceeeeeeec----CCceEEEEEe--CC-----------------CC--eEEEecCCc
Q 019384           28 SNHSDHLLVSSWDKSVRLYDASANVLRGEFMH----GGPVLDCCFH--DD-----------------SS--GFSASADHT   82 (342)
Q Consensus        28 s~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h----~~~V~~~~~~--~~-----------------~~--~~s~s~D~~   82 (342)
                      +|-..++|....||.+|+||...+.++.++..    ++..++..|.  .+                 ++  ++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            45678999999999999999998887776642    2333444442  11                 11  346677888


Q ss_pred             EEEEEeccCcee-ec--ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeE
Q 019384           83 VRRLVFSHGKED-IL--GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRL  159 (342)
Q Consensus        83 i~~w~~~~~~~~-~~--~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~  159 (342)
                      |.+++...++.. .+  ..|-+.|.++-++.+-..|.|++.|..+..|+......  ......  .+..+.++++.++.-
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~--~~~~~~--~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI--IRIWKE--QKPLVSSLCISPDGK  157 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee--eeeecc--CCCccceEEEcCCCC
Confidence            888888777742 22  57999999999998888999999999999999764321  112221  223344555554433


Q ss_pred             EEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeC-----CceEEEEc
Q 019384          160 VVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN-----GTGYALSS  207 (342)
Q Consensus       160 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~s  207 (342)
                      ..+++.+.|++||+.+.+......  ++...+.+++|--.     |.+++++.
T Consensus       158 ~l~~as~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa  208 (541)
T KOG4547|consen  158 ILLTASRQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSA  208 (541)
T ss_pred             EEEeccceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeecc
Confidence            334555789999999875443332  34455677776554     45555443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.62  E-value=1.1e-07  Score=56.71  Aligned_cols=35  Identities=23%  Similarity=0.507  Sum_probs=32.8

Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEc
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD  128 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd  128 (342)
                      ..+.+|...|++++|+|++..|+||+.|++|++||
T Consensus         5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            35789999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.61  E-value=8.5e-08  Score=57.19  Aligned_cols=32  Identities=25%  Similarity=0.429  Sum_probs=30.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEE
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYD   47 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd   47 (342)
                      +.|.+.|++|+|+|++++|+|++.|++|+|||
T Consensus         8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57899999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.60  E-value=2e-06  Score=74.25  Aligned_cols=241  Identities=16%  Similarity=0.211  Sum_probs=144.5

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC-ceeeeeeecC--CceEEEEEeCCCCeE-EEecCCcEEEEEeccC
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHG--GPVLDCCFHDDSSGF-SASADHTVRRLVFSHG   91 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~-~~~~~~~~h~--~~V~~~~~~~~~~~~-s~s~D~~i~~w~~~~~   91 (342)
                      ++|.+.|++...-|-.+-+++.+.|.++|||--.+ +.....+-|.  .++++..+......+ .+=..+++.-+.+...
T Consensus        21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed  100 (404)
T KOG1409|consen   21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED  100 (404)
T ss_pred             cCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhh
Confidence            68889999988888888999999999999997533 3322222233  456777777655544 4444556655544322


Q ss_pred             c-----eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC
Q 019384           92 K-----EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR  166 (342)
Q Consensus        92 ~-----~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~  166 (342)
                      -     .+....|...|..+-|+-..+.+++.+.|+.+.---.+++..     ++.+........+.++-.....+-..+
T Consensus       101 fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~-----lg~Y~~~~~~t~~~~d~~~~fvGd~~g  175 (404)
T KOG1409|consen  101 FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR-----LGGYNFETPASALQFDALYAFVGDHSG  175 (404)
T ss_pred             hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc-----ccceEeeccCCCCceeeEEEEeccccc
Confidence            1     234457999999999998888999999998764322222211     111110000000000000111122223


Q ss_pred             eEEEEeCCCCCC-cccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384          167 HVNVYDLRNMSQ-PEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP  245 (342)
Q Consensus       167 ~v~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~  245 (342)
                      .|....+..... ++... .++...+.+++|.+....+.+++.+..+.+  ||+... ....+.+.+|.+         .
T Consensus       176 qvt~lr~~~~~~~~i~~~-~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~--wdigg~-~g~~~el~gh~~---------k  242 (404)
T KOG1409|consen  176 QITMLKLEQNGCQLITTF-NGHTGEVTCLKWDPGQRLLFSGASDHSVIM--WDIGGR-KGTAYELQGHND---------K  242 (404)
T ss_pred             ceEEEEEeecCCceEEEE-cCcccceEEEEEcCCCcEEEeccccCceEE--EeccCC-cceeeeeccchh---------h
Confidence            333222211111 12221 233456788889999888999999988754  887432 223345555544         4


Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384          246 VNAIAFHPIYGTFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~  274 (342)
                      |.++.+-+.-+.|.++++||-|.+|+.+.
T Consensus       243 V~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  243 VQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            77777777788899999999999999764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.59  E-value=5e-07  Score=92.33  Aligned_cols=193  Identities=16%  Similarity=0.228  Sum_probs=127.1

Q ss_pred             CceEEEEEeCCC-CeEEEecCCcEEEEEeccCcee-ec-ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcce
Q 019384           61 GPVLDCCFHDDS-SGFSASADHTVRRLVFSHGKED-IL-GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQER  137 (342)
Q Consensus        61 ~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~~~~-~~-~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~  137 (342)
                      ..|.++.=+|.. ..+|++.||.+++|.+..+... .+ ..-...|+.+.|+.+|+.+..+..||.|.+|-..   +...
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~---pk~~ 2285 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS---PKPY 2285 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC---Ccce
Confidence            445555544443 3479999999999999887632 22 1222788999999999999999999999999864   1111


Q ss_pred             eeeeecCCCCcEEEEeccCCeEEEEE---cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEE
Q 019384          138 TLVGTYPQPERVYSLSLVGNRLVVAT---AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAM  214 (342)
Q Consensus       138 ~~~~~~~~~~~v~~~s~~~~~~~~~s---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i  214 (342)
                      ...+.  +......|.+-+..+++++   .++.+.+||..-........ ..+....+++++-|..+.+++|+.+|.+. 
T Consensus      2286 ~s~qc--hnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~- 2361 (2439)
T KOG1064|consen 2286 TSWQC--HNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVC- 2361 (2439)
T ss_pred             ecccc--CCccccceeeeehhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEE-
Confidence            11222  2223334555455555543   33579999965432211111 22334568899999999999999999874 


Q ss_pred             EEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC
Q 019384          215 EFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS  282 (342)
Q Consensus       215 ~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  282 (342)
                       +||++..+....+.                  +  ++ ...++++|+..|+|+||++.....+..+.
T Consensus      2362 -l~D~rqrql~h~~~------------------~--~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2362 -LFDIRQRQLRHTFQ------------------A--LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             -EeehHHHHHHHHhh------------------h--hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence             59997654433221                  1  33 46789999999999999998766555543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.58  E-value=2.8e-05  Score=65.93  Aligned_cols=104  Identities=13%  Similarity=0.105  Sum_probs=71.9

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee-------ecCCceEEEEEeCCC-------CeEEEecCCcEE
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF-------MHGGPVLDCCFHDDS-------SGFSASADHTVR   84 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~-------~h~~~V~~~~~~~~~-------~~~s~s~D~~i~   84 (342)
                      .-...-|+||||+..||-+...|+|++||+.+..+....       .-..+|-++.|.+-.       +++.-..+|.++
T Consensus        43 ~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   43 NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             CchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence            345678999999999999999999999999765432211       123456777785322       456778888888


Q ss_pred             EEEeccCc-----e---eecc-cCCcceeEEEEeCCCCEEEEeeCCC
Q 019384           85 RLVFSHGK-----E---DILG-KHDAPVRCIEYSYAAGQVITGSWDK  122 (342)
Q Consensus        85 ~w~~~~~~-----~---~~~~-~h~~~V~~~~~~~~~~~l~sgs~D~  122 (342)
                      -+-+..+.     +   ..+. .+...|.++.++|..++|+.|+...
T Consensus       123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~  169 (282)
T PF15492_consen  123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ  169 (282)
T ss_pred             eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCC
Confidence            77764332     1   1122 2356799999999888887766543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.58  E-value=2.9e-05  Score=66.49  Aligned_cols=223  Identities=18%  Similarity=0.143  Sum_probs=123.0

Q ss_pred             CCCcEEEEECCCceeeeeeecC---CceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEE
Q 019384           39 WDKSVRLYDASANVLRGEFMHG---GPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQV  115 (342)
Q Consensus        39 ~Dgti~vwd~~~~~~~~~~~h~---~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l  115 (342)
                      .+|+|..||..+++.+......   +...+.....++.+++++.++.+..||..+++..--..-...+.... ...++.+
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v   79 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV   79 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence            3789999999888766655442   22222234467778888899999999998887431111111111111 1245677


Q ss_pred             EEeeCCCcEEEEcCCCCCCcceeeeeecCC-C-CcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccc--ee-
Q 019384          116 ITGSWDKSLKCWDPRGASGQERTLVGTYPQ-P-ERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLK--YQ-  190 (342)
Q Consensus       116 ~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~-~-~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~--~~-  190 (342)
                      +.++.|+.|..+|.+++...........+. . .........++.++++..++.|..+|+++++...........  .+ 
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~  159 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI  159 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred             ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence            777788899999987654321101111010 1 112234444778888888999999999988543222111101  00 


Q ss_pred             -----eEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCC
Q 019384          191 -----TRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDG  265 (342)
Q Consensus       191 -----~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg  265 (342)
                           ...-....++ .+.++..++.+ +.+ |..+...  .|....           ..+.. ...+++..|+.++.++
T Consensus       160 ~~~~~~~~~~~~~~~-~v~~~~~~g~~-~~~-d~~tg~~--~w~~~~-----------~~~~~-~~~~~~~~l~~~~~~~  222 (238)
T PF13360_consen  160 SSFSDINGSPVISDG-RVYVSSGDGRV-VAV-DLATGEK--LWSKPI-----------SGIYS-LPSVDGGTLYVTSSDG  222 (238)
T ss_dssp             EEETTEEEEEECCTT-EEEEECCTSSE-EEE-ETTTTEE--EEEECS-----------S-ECE-CEECCCTEEEEEETTT
T ss_pred             eeecccccceEEECC-EEEEEcCCCeE-EEE-ECCCCCE--EEEecC-----------CCccC-CceeeCCEEEEEeCCC
Confidence                 0111122234 56666666652 223 6654331  121110           01111 1345678888877999


Q ss_pred             eEEEEeCCCceeee
Q 019384          266 FVNVWDGNNKKRLY  279 (342)
Q Consensus       266 ~I~iWd~~~~~~~~  279 (342)
                      .|..||.++++.+.
T Consensus       223 ~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  223 RLYALDLKTGKVVW  236 (238)
T ss_dssp             EEEEEETTTTEEEE
T ss_pred             EEEEEECCCCCEEe
Confidence            99999999998764

...

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.58  E-value=3.8e-05  Score=79.24  Aligned_cols=112  Identities=17%  Similarity=0.231  Sum_probs=74.7

Q ss_pred             CCeEEEEEcCCCCeEEEE-eCCCcEEEEECCCceeeeeeec-----------------CCceEEEEEeC-CCCeE-EEec
Q 019384           20 DGISNLRFSNHSDHLLVS-SWDKSVRLYDASANVLRGEFMH-----------------GGPVLDCCFHD-DSSGF-SASA   79 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~-s~Dgti~vwd~~~~~~~~~~~h-----------------~~~V~~~~~~~-~~~~~-s~s~   79 (342)
                      +.-..|+++++++.|..+ ...+.|+++|..++......+-                 -....+++|++ ++.++ +.+.
T Consensus       624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~  703 (1057)
T PLN02919        624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG  703 (1057)
T ss_pred             CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence            345789999988866554 4557899999877654333210                 01235788986 55554 5567


Q ss_pred             CCcEEEEEeccCceeecccC---------------CcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCC
Q 019384           80 DHTVRRLVFSHGKEDILGKH---------------DAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRG  131 (342)
Q Consensus        80 D~~i~~w~~~~~~~~~~~~h---------------~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~  131 (342)
                      ++.|++|+...+....+.+.               -.....++++|+++.| ++-+.++.|++||+++
T Consensus       704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t  771 (1057)
T PLN02919        704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT  771 (1057)
T ss_pred             CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence            78899999876654322211               1234579999998844 5667779999999864

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.57  E-value=0.00017  Score=73.25  Aligned_cols=277  Identities=14%  Similarity=0.171  Sum_probs=156.7

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEE----ECCCceeeeeeecCCceEEEEEeCCCCeE-EEecCCcEEEEEecc-
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLY----DASANVLRGEFMHGGPVLDCCFHDDSSGF-SASADHTVRRLVFSH-   90 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vw----d~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s~D~~i~~w~~~~-   90 (342)
                      ...+.|.++.|-++...|..+..+|-|-+.    |.....+-..-.-..+|.+++|+||..++ .++.++.+.++...- 
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd  152 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD  152 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence            446789999999999999999999999999    55544333323457899999999998865 566677765443211 


Q ss_pred             ------------C----------c-eeeccc------------------------CCcceeEEEEeCCCCEEEEeeC---
Q 019384           91 ------------G----------K-EDILGK------------------------HDAPVRCIEYSYAAGQVITGSW---  120 (342)
Q Consensus        91 ------------~----------~-~~~~~~------------------------h~~~V~~~~~~~~~~~l~sgs~---  120 (342)
                                  +          + +.-+.|                        +.+.-..++|-.||.+||..+.   
T Consensus       153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~  232 (928)
T PF04762_consen  153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE  232 (928)
T ss_pred             EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence                        0          0 000100                        1123346778889999988775   


Q ss_pred             C---CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc---CCeEEEEeCCCCCCcc-cccccccceeeEE
Q 019384          121 D---KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA---GRHVNVYDLRNMSQPE-QRRESSLKYQTRC  193 (342)
Q Consensus       121 D---~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~---d~~v~iwd~~~~~~~~-~~~~~~~~~~~~~  193 (342)
                      +   +.||+|+-+   +..........+-....++.++|+.|++.-.   ...|.+|.-...+... ..........+..
T Consensus       233 ~~~~R~iRVy~Re---G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~  309 (928)
T PF04762_consen  233 TGSRRVIRVYSRE---GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE  309 (928)
T ss_pred             CCceeEEEEECCC---ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence            2   479999964   2211111111222334455667777766543   1346677533221111 0000112345678


Q ss_pred             EEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeC
Q 019384          194 VRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDG  272 (342)
Q Consensus       194 v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~  272 (342)
                      +.|.+++..+++...+.   +.+|....    ..|.++........    ..+..+.|+|... .|.....+|.+..++.
T Consensus       310 l~Wn~ds~iLAv~~~~~---vqLWt~~N----YHWYLKqei~~~~~----~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  310 LAWNSDSEILAVWLEDR---VQLWTRSN----YHWYLKQEIRFSSS----ESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             EEECCCCCEEEEEecCC---ceEEEeeC----CEEEEEEEEEccCC----CCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            99999999988876554   56676632    22222221111110    1234478887533 3555444444444331


Q ss_pred             ----C----------------Ccee--eeccC-------------CCCcceEEEEECCCCCEEEEEEecc
Q 019384          273 ----N----------------NKKR--LYQYS-------------KYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       273 ----~----------------~~~~--~~~~~-------------~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                          .                +|..  ++.|.             .....|.+++|++++..+|+-.+++
T Consensus       379 ~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~  448 (928)
T PF04762_consen  379 AWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDG  448 (928)
T ss_pred             EEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCC
Confidence                1                0111  11111             2357899999999998777766654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.57  E-value=1.9e-05  Score=73.42  Aligned_cols=201  Identities=10%  Similarity=0.044  Sum_probs=113.5

Q ss_pred             cEEEEEeccCceeecccCCcceeEEEEeCCCCE-EEEeeCC---CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC
Q 019384           82 TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ-VITGSWD---KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN  157 (342)
Q Consensus        82 ~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~sgs~D---~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~  157 (342)
                      .|.+-|.+..+...+.... .+..-.|+||++. ++-.+.+   ..|.++|+.++..   ..+...........++++++
T Consensus       170 ~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~---~~lt~~~g~~~~~~~SPDG~  245 (419)
T PRK04043        170 NIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK---EKIASSQGMLVVSDVSKDGS  245 (419)
T ss_pred             eEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---EEEecCCCcEEeeEECCCCC
Confidence            3444444444444333333 6778999999984 5544444   4588888865432   22322222233456788887


Q ss_pred             eEEEE-EcC--CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeE
Q 019384          158 RLVVA-TAG--RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCH  233 (342)
Q Consensus       158 ~~~~~-s~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h  233 (342)
                      .++.. +.+  ..|.++|+..+....  .. ..........|+|||+.++..+. .+...|+.+|.......+ ....  
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~~--LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-lt~~--  319 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLTQ--IT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-VVFH--  319 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEEE--cc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-CccC--
Confidence            66543 333  357777887653211  11 11111223469999988877663 455567778875432211 1110  


Q ss_pred             EecCCCCceeeeeeEEEEcCCCCeEEEecCC---------CeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEE
Q 019384          234 RKSEAGRDIVYPVNAIAFHPIYGTFATGGCD---------GFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       234 ~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D---------g~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s  304 (342)
                           +      .....|+|+|+.|+-.+..         ..|.+.|++++.. +.++.. ......+|||||+.|+-.+
T Consensus       320 -----g------~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~  386 (419)
T PRK04043        320 -----G------KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIK  386 (419)
T ss_pred             -----C------CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEE
Confidence                 1      0123799999987655432         3678888876643 334332 2334689999999888775


Q ss_pred             e
Q 019384          305 S  305 (342)
Q Consensus       305 ~  305 (342)
                      .
T Consensus       387 ~  387 (419)
T PRK04043        387 Y  387 (419)
T ss_pred             c
Confidence            4

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.56  E-value=0.00012  Score=66.60  Aligned_cols=269  Identities=15%  Similarity=0.147  Sum_probs=148.8

Q ss_pred             CCCCCCCCeEEEEEcCCCCeEEEEeCCC---------------cEEEEECCCceeeeee-ecCCc--eE-EEEEeCCCCe
Q 019384           14 LGNPPSDGISNLRFSNHSDHLLVSSWDK---------------SVRLYDASANVLRGEF-MHGGP--VL-DCCFHDDSSG   74 (342)
Q Consensus        14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dg---------------ti~vwd~~~~~~~~~~-~h~~~--V~-~~~~~~~~~~   74 (342)
                      |.......|..+.|||.+.+|.|=+...               .+.+||+.++.+...+ ....+  .+ -+.|+-++.+
T Consensus        66 l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y  145 (561)
T COG5354          66 LVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKY  145 (561)
T ss_pred             eeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchh
Confidence            3344557899999999999999865544               4999999988765443 33333  34 5667644333


Q ss_pred             EEEecCCcEEEEEeccCceeecccC---CcceeEEEEeCCCC--EEE-----EeeCCCcEEEEcCCCCCCcceeeeeecC
Q 019384           75 FSASADHTVRRLVFSHGKEDILGKH---DAPVRCIEYSYAAG--QVI-----TGSWDKSLKCWDPRGASGQERTLVGTYP  144 (342)
Q Consensus        75 ~s~s~D~~i~~w~~~~~~~~~~~~h---~~~V~~~~~~~~~~--~l~-----sgs~D~~I~iWd~~~~~~~~~~~~~~~~  144 (342)
                      +.--....+.++++ +.+.....-|   ...|....|+|.++  .|+     ....++++++|.+..........+  ++
T Consensus       146 ~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l--fk  222 (561)
T COG5354         146 VARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL--FK  222 (561)
T ss_pred             hhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee--Ee
Confidence            22123346777776 4332111111   24467777887532  232     245566777776642221111101  01


Q ss_pred             CCCcEEEEeccCCeEEEE----E-------cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEE
Q 019384          145 QPERVYSLSLVGNRLVVA----T-------AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA  213 (342)
Q Consensus       145 ~~~~v~~~s~~~~~~~~~----s-------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~  213 (342)
                      ....-+.+...++.++.-    .       +...+.|++++..+.+...   .+...+-.+.|.|.+..+++.+.-....
T Consensus       223 ~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~---~~~~pVhdf~W~p~S~~F~vi~g~~pa~  299 (561)
T COG5354         223 VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK---DLKDPVHDFTWEPLSSRFAVISGYMPAS  299 (561)
T ss_pred             ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec---cccccceeeeecccCCceeEEecccccc
Confidence            111111112223322211    1       1134677777654333321   2344566788999988887776333334


Q ss_pred             EEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC---CeEEEEeCCCceeee-ccCCCCcceE
Q 019384          214 MEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD---GFVNVWDGNNKKRLY-QYSKYPTSIA  289 (342)
Q Consensus       214 i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D---g~I~iWd~~~~~~~~-~~~~~~~~V~  289 (342)
                      +.++|++..  . .+.+.-           .+=+.+.|+|.+++++.++-|   |.|-+||..+...+. .+.+-  ...
T Consensus       300 ~s~~~lr~N--l-~~~~Pe-----------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s  363 (561)
T COG5354         300 VSVFDLRGN--L-RFYFPE-----------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTS  363 (561)
T ss_pred             eeecccccc--e-EEecCC-----------cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--Cce
Confidence            456777532  1 111110           023568899999999887654   579999988655443 44433  245


Q ss_pred             EEEECCCCCEEEEEE
Q 019384          290 ALSFSRDGRLLAVAS  304 (342)
Q Consensus       290 ~v~~spdg~~las~s  304 (342)
                      -+.|||||+++-+.-
T Consensus       364 ~~~wspd~qF~~~~~  378 (561)
T COG5354         364 YCDWSPDGQFYDTDT  378 (561)
T ss_pred             EeeccCCceEEEecC
Confidence            678999999887654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.55  E-value=3.6e-07  Score=80.18  Aligned_cols=98  Identities=20%  Similarity=0.179  Sum_probs=76.2

Q ss_pred             EEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc--eeecccCCcceeEEEEeCCC
Q 019384           36 VSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK--EDILGKHDAPVRCIEYSYAA  112 (342)
Q Consensus        36 s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~--~~~~~~h~~~V~~~~~~~~~  112 (342)
                      .++....+.+|....+..+.+.+|-.-+++++|++|++. +++--|..||+-......  ....-||+..|..++..+ +
T Consensus       127 kagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~  205 (390)
T KOG3914|consen  127 KAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-N  205 (390)
T ss_pred             ecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-C
Confidence            345556666776666677777889999999999977765 588888888877665543  234578999999999885 4


Q ss_pred             CEEEEeeCCCcEEEEcCCCCCC
Q 019384          113 GQVITGSWDKSLKCWDPRGASG  134 (342)
Q Consensus       113 ~~l~sgs~D~~I~iWd~~~~~~  134 (342)
                      ..|+|||.|++|++||.+++..
T Consensus       206 ~~LlS~sGD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  206 YLLLSGSGDKTLRLWDITSGKL  227 (390)
T ss_pred             ceeeecCCCCcEEEEecccCCc
Confidence            5689999999999999987643

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.54  E-value=0.00024  Score=61.27  Aligned_cols=230  Identities=16%  Similarity=0.112  Sum_probs=123.1

Q ss_pred             EEEEcC-CCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCceeecc----
Q 019384           24 NLRFSN-HSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKEDILG----   97 (342)
Q Consensus        24 ~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~~~~~----   97 (342)
                      .++|.+ ++.++++--..+.|..|+..++...... ..+ ..++.+. +++.++.+..++ +.++|..+++...+.    
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~   80 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPD   80 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEET
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccC
Confidence            578888 6777777778899999999887654322 222 6677776 677777766544 455588777643321    


Q ss_pred             -c-CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCC
Q 019384           98 -K-HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRN  175 (342)
Q Consensus        98 -~-h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~  175 (342)
                       . .....+.+++.++|...++........        .     .    ....+..+...          +.+....-  
T Consensus        81 ~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~--------~-----~----~~g~v~~~~~~----------~~~~~~~~--  131 (246)
T PF08450_consen   81 GGVPFNRPNDVAVDPDGNLYVTDSGGGGAS--------G-----I----DPGSVYRIDPD----------GKVTVVAD--  131 (246)
T ss_dssp             TCSCTEEEEEEEE-TTS-EEEEEECCBCTT--------C-----G----GSEEEEEEETT----------SEEEEEEE--
T ss_pred             CCcccCCCceEEEcCCCCEEEEecCCCccc--------c-----c----cccceEEECCC----------CeEEEEec--
Confidence             1 335577888888887656544321100        0     0    00111112211          11111100  


Q ss_pred             CCCcccccccccceeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhh-cccceeeeEEecCCCCceeeeeeEEEEcC
Q 019384          176 MSQPEQRRESSLKYQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQ-AKKYAFKCHRKSEAGRDIVYPVNAIAFHP  253 (342)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~-~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  253 (342)
                                .+ ...+.++++|+++.+++. +..+.  |+.++...... ......-.+....     .+....+++..
T Consensus       132 ----------~~-~~pNGi~~s~dg~~lyv~ds~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~-----~g~pDG~~vD~  193 (246)
T PF08450_consen  132 ----------GL-GFPNGIAFSPDGKTLYVADSFNGR--IWRFDLDADGGELSNRRVFIDFPGG-----PGYPDGLAVDS  193 (246)
T ss_dssp             ----------EE-SSEEEEEEETTSSEEEEEETTTTE--EEEEEEETTTCCEEEEEEEEE-SSS-----SCEEEEEEEBT
T ss_pred             ----------Cc-ccccceEECCcchheeecccccce--eEEEeccccccceeeeeeEEEcCCC-----CcCCCcceEcC
Confidence                      00 123556666666655433 33343  33444432111 0000000111000     01255688999


Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEE-CCCCCEEEEEE
Q 019384          254 IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSF-SRDGRLLAVAS  304 (342)
Q Consensus       254 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~-spdg~~las~s  304 (342)
                      +|+.+++....+.|.++|.+ ++.+..+.--...+++++| .||.+.|-+.+
T Consensus       194 ~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  194 DGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             TS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            99888877778899999988 7766655433458999999 58877555544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.52  E-value=1e-06  Score=90.22  Aligned_cols=184  Identities=15%  Similarity=0.124  Sum_probs=119.4

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee---eeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCceee
Q 019384           20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG---EFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKEDI   95 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~---~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~~~   95 (342)
                      ..|..+.=.|.-.+-+||+.||.|++|....+....   +.+. ..|+.+.|+ .++..-.+-.||.+.+|.........
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s 2287 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTS 2287 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCcceec
Confidence            455555555666788999999999999986554222   2233 678889997 55555577789999999877433334


Q ss_pred             cccCCcceeEEEEeCCCCEEEEe---eCCCcEEEEcCCCCCCcceeee-eecCCCCcEEEEeccCCeEEEEEcCCeEEEE
Q 019384           96 LGKHDAPVRCIEYSYAAGQVITG---SWDKSLKCWDPRGASGQERTLV-GTYPQPERVYSLSLVGNRLVVATAGRHVNVY  171 (342)
Q Consensus        96 ~~~h~~~V~~~~~~~~~~~l~sg---s~D~~I~iWd~~~~~~~~~~~~-~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iw  171 (342)
                      ..-|......+.|..  ..++++   +.++.+.+||.--....  ..+ ..|.+..++....+.-..+++|+.+|.|++|
T Consensus      2288 ~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~--s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~ 2363 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN--SLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLF 2363 (2439)
T ss_pred             cccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc--ceeeeecCCCceEEEEcCcceEEEecCCcCcEEEe
Confidence            456887777777764  556653   55678999996533221  112 3333344444444444578999999999999


Q ss_pred             eCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhh
Q 019384          172 DLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEA  222 (342)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~  222 (342)
                      |++..+....     ..      +++ ...+++.++..|.+.  +|+..+.
T Consensus      2364 D~rqrql~h~-----~~------~~~-~~~~f~~~ss~g~ik--Iw~~s~~ 2400 (2439)
T KOG1064|consen 2364 DIRQRQLRHT-----FQ------ALD-TREYFVTGSSEGNIK--IWRLSEF 2400 (2439)
T ss_pred             ehHHHHHHHH-----hh------hhh-hhheeeccCcccceE--EEEcccc
Confidence            9985321111     11      022 445688888888765  5887654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.51  E-value=1.8e-06  Score=73.03  Aligned_cols=110  Identities=20%  Similarity=0.164  Sum_probs=86.9

Q ss_pred             eEEEEEcCCCCeEEEEeCCCcEEEEECCCceee---eeeecCCceEEEEEe--CCCCeEEEecCCcEEEEEeccCceee-
Q 019384           22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR---GEFMHGGPVLDCCFH--DDSSGFSASADHTVRRLVFSHGKEDI-   95 (342)
Q Consensus        22 V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~---~~~~h~~~V~~~~~~--~~~~~~s~s~D~~i~~w~~~~~~~~~-   95 (342)
                      -.++.|++-+..++++-.+|.+-+-+.....+.   ....|+-+.+.+.|+  ....+++||.|+.+.-||++..+... 
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            357888999999999989999986665544332   234699999999997  34556899999999999998554333 


Q ss_pred             --cccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCC
Q 019384           96 --LGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRG  131 (342)
Q Consensus        96 --~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~  131 (342)
                        ...|...|.|+.-+| +..+|+||+.|-.|++||+|+
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn  242 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN  242 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence              346889999998776 457899999999999999984

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.49  E-value=5.9e-05  Score=68.02  Aligned_cols=211  Identities=16%  Similarity=0.142  Sum_probs=124.0

Q ss_pred             CCeEEEecCCcEEEEEeccCceeecc-------cCC-----cceeEEE-EeC-CCCEEEEeeCCCcEEEEcCCCCCCcce
Q 019384           72 SSGFSASADHTVRRLVFSHGKEDILG-------KHD-----APVRCIE-YSY-AAGQVITGSWDKSLKCWDPRGASGQER  137 (342)
Q Consensus        72 ~~~~s~s~D~~i~~w~~~~~~~~~~~-------~h~-----~~V~~~~-~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~  137 (342)
                      ++.+.-+.-|.|.++|.++.+...+.       ...     .++.-+. |++ +|++++..|- |...|.+.-.  +. .
T Consensus       278 GkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~--~~-~  353 (668)
T COG4946         278 GKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD--GY-S  353 (668)
T ss_pred             CcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC--Ce-e
Confidence            44455556677778887766533221       111     1111121 332 5677777765 3333333211  11 1


Q ss_pred             eeeeecCCCCcEEEEeccCCeEEEEEcCC-eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEE
Q 019384          138 TLVGTYPQPERVYSLSLVGNRLVVATAGR-HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEF  216 (342)
Q Consensus       138 ~~~~~~~~~~~v~~~s~~~~~~~~~s~d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~  216 (342)
                      ..+. .....+-..+..+++.++.++.|+ .+-++|.+++...  +.+..+ ..+..++.+++|+.++++....  .+++
T Consensus       354 iqv~-~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k--r~e~~l-g~I~av~vs~dGK~~vvaNdr~--el~v  427 (668)
T COG4946         354 IQVG-KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK--RIEKDL-GNIEAVKVSPDGKKVVVANDRF--ELWV  427 (668)
T ss_pred             EEcC-CCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE--EeeCCc-cceEEEEEcCCCcEEEEEcCce--EEEE
Confidence            1111 112233345666677889999998 6999999886432  222222 3578899999999888776544  5677


Q ss_pred             eechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCC----eEEEEeCCCceeeeccCCCCcceEEEE
Q 019384          217 FDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDG----FVNVWDGNNKKRLYQYSKYPTSIAALS  292 (342)
Q Consensus       217 ~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg----~I~iWd~~~~~~~~~~~~~~~~V~~v~  292 (342)
                      +|+..... +.  +...+        .+-|..+.|||+++++|-+--+|    .|+++|..+++....- ...+.=.+-|
T Consensus       428 ididngnv-~~--idkS~--------~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPa  495 (668)
T COG4946         428 IDIDNGNV-RL--IDKSE--------YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPA  495 (668)
T ss_pred             EEecCCCe-eE--ecccc--------cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcc
Confidence            88754422 11  11000        12488899999999999887766    5999999987754322 2222336789


Q ss_pred             ECCCCCEEEEEE
Q 019384          293 FSRDGRLLAVAS  304 (342)
Q Consensus       293 ~spdg~~las~s  304 (342)
                      |.|||++|---|
T Consensus       496 FD~d~ryLYfLs  507 (668)
T COG4946         496 FDPDGRYLYFLS  507 (668)
T ss_pred             cCCCCcEEEEEe
Confidence            999999775444

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.48  E-value=0.00015  Score=65.50  Aligned_cols=125  Identities=13%  Similarity=0.178  Sum_probs=99.1

Q ss_pred             CCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCC-cEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCC-cEEE
Q 019384            8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDK-SVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADH-TVRR   85 (342)
Q Consensus         8 ~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dg-ti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~-~i~~   85 (342)
                      |.-|-.+--++..+|.-.++..++..++.|-.|| .+-|+|..+++.......-+.|.++..++++..+..+.|. .+.+
T Consensus       348 ~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~v  427 (668)
T COG4946         348 PWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWV  427 (668)
T ss_pred             CCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence            3344444557778899999999999999999999 9999999998876666667889999999988866555554 6777


Q ss_pred             EEeccCceeecccC-CcceeEEEEeCCCCEEEEeeCCC----cEEEEcCCCC
Q 019384           86 LVFSHGKEDILGKH-DAPVRCIEYSYAAGQVITGSWDK----SLKCWDPRGA  132 (342)
Q Consensus        86 w~~~~~~~~~~~~h-~~~V~~~~~~~~~~~l~sgs~D~----~I~iWd~~~~  132 (342)
                      .|+++++.+.+... .+-|+.++|+|++..||=+--+|    .|+++|..++
T Consensus       428 ididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         428 IDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             EEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence            78899988776543 46799999999999888665554    7999998753

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.47  E-value=2.6e-06  Score=80.31  Aligned_cols=258  Identities=14%  Similarity=0.159  Sum_probs=141.8

Q ss_pred             ccCCCCCCCCeEEEEEcCCC--CeEEEEeCCCcEEEEECCCc--eee--eeeecCCceEEEEEeC--CCCeEEEecCCcE
Q 019384           12 RELGNPPSDGISNLRFSNHS--DHLLVSSWDKSVRLYDASAN--VLR--GEFMHGGPVLDCCFHD--DSSGFSASADHTV   83 (342)
Q Consensus        12 ~~~~~~~~~~V~~l~fs~~~--~~l~s~s~Dgti~vwd~~~~--~~~--~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i   83 (342)
                      +-|++...=.|..+.|+++.  ++-+..-......+|++...  ..+  -+-+|+.+|+++.|.+  ..-+.+++.|..+
T Consensus        60 r~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~v  139 (1081)
T KOG0309|consen   60 RWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYV  139 (1081)
T ss_pred             eeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccc
Confidence            33444444567788888864  34333334455678997532  222  2347889999999973  3456799999999


Q ss_pred             EEEEeccCceee--cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC---Ce
Q 019384           84 RRLVFSHGKEDI--LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG---NR  158 (342)
Q Consensus        84 ~~w~~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~---~~  158 (342)
                      ..||+.......  +..-...-..++|+-....++..+.-+-|++||++.+.... ..+..  +...+..+.++.   ..
T Consensus       140 h~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl-~s~K~--~vs~vn~~~fnr~~~s~  216 (1081)
T KOG0309|consen  140 HAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPL-CSLKG--HVSSVNSIDFNRFKYSE  216 (1081)
T ss_pred             eeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcce-EEecc--cceeeehHHHhhhhhhh
Confidence            999998876332  22223445678888766667777777889999998654422 22222  233344455543   36


Q ss_pred             EEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhh--------hhccccee
Q 019384          159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEA--------SQAKKYAF  230 (342)
Q Consensus       159 ~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~--------~~~~~~~~  230 (342)
                      +.+.+.|++|++||..+.... -......++.+..-.+.|=|....+--+.|.+.+..++-+..        .....+.+
T Consensus       217 ~~s~~~d~tvkfw~y~kSt~e-~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F  295 (1081)
T KOG0309|consen  217 IMSSSNDGTVKFWDYSKSTTE-SKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF  295 (1081)
T ss_pred             hcccCCCCceeeecccccccc-cceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee
Confidence            889999999999998753221 111112222222223344444433332222222222222111        01123455


Q ss_pred             eeEEecCCCCceeeeeeEEEEcCCCC--eEEEecCCCeEEEEeCCC
Q 019384          231 KCHRKSEAGRDIVYPVNAIAFHPIYG--TFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       231 ~~h~~~~~~~~~~~~v~~v~~sp~~~--~l~sgs~Dg~I~iWd~~~  274 (342)
                      .+|.......-=. .=-.+.+..+.+  .|+|-|.|.++|+|-+.+
T Consensus       296 ~GH~D~V~eFlWR-~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  296 VGHDDVVLEFLWR-KRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cCcchHHHHHhhh-hcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            5664421000000 000112222322  489999999999997653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.46  E-value=7.4e-06  Score=68.57  Aligned_cols=174  Identities=11%  Similarity=0.011  Sum_probs=103.6

Q ss_pred             CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcE-EEEeccCCeEEEEEcCCeEEEEeCCCCCCccccccccccee
Q 019384          112 AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERV-YSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQ  190 (342)
Q Consensus       112 ~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v-~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~  190 (342)
                      ...|+.|+.-|...+|.+.+...-... ........++ ...+-..-.+..++.|.++++.++...........+.  ..
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~-cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~--~~  160 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQ-CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN--LT  160 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceee-ecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc--cc
Confidence            457889999999999998654321111 1111111111 1112222357788999999999886543322211111  22


Q ss_pred             eEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEE
Q 019384          191 TRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVW  270 (342)
Q Consensus       191 ~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iW  270 (342)
                      ...++.++++...++.+...++.  +|.+.....   +..+.-.+  ...++.   -+..|+.....+|++..||++-||
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf--~y~id~~se---y~~~~~~a--~t~D~g---F~~S~s~~~~~FAv~~Qdg~~~I~  230 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVF--RYAIDDESE---YIENIYEA--PTSDHG---FYNSFSENDLQFAVVFQDGTCAIY  230 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcce--EEEeCCccc---eeeeeEec--ccCCCc---eeeeeccCcceEEEEecCCcEEEE
Confidence            56778899999888777766654  455432221   11110000  011211   256788888999999999999999


Q ss_pred             eCCCceee-----eccCCCCcceEEEEECCCCC
Q 019384          271 DGNNKKRL-----YQYSKYPTSIAALSFSRDGR  298 (342)
Q Consensus       271 d~~~~~~~-----~~~~~~~~~V~~v~~spdg~  298 (342)
                      |++.....     .+-..|.+.+..+.|||-|.
T Consensus       231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             EecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence            99864322     23345889999999998766

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.44  E-value=6.2e-06  Score=77.58  Aligned_cols=235  Identities=14%  Similarity=0.140  Sum_probs=139.3

Q ss_pred             CceEEEEEe-CCCCeEEEecCCcEEEEEeccCce----------------eecccCCcceeEEEEeCCCCEEEEeeCCCc
Q 019384           61 GPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKE----------------DILGKHDAPVRCIEYSYAAGQVITGSWDKS  123 (342)
Q Consensus        61 ~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~----------------~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~  123 (342)
                      ....++.|. ..+.++.|+.||.+++.-+.+...                .++.||...|.-+.|+.+.+.|-|+..+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            345788997 555667889999999987765431                246799999999999988889999999999


Q ss_pred             EEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEEEeCCCCCCcccccccccc-eeeEEEEEeeCC
Q 019384          124 LKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLK-YQTRCVRCYPNG  200 (342)
Q Consensus       124 I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~  200 (342)
                      |.+|-+-.+.=..  .+........+.++++  +|..|.++-.||.|.+=.+...+.    ....++ .+..-+.|++|.
T Consensus        95 IiVWmlykgsW~E--EMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI----wgKeLkg~~l~hv~ws~D~  168 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCE--EMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI----WGKELKGQLLAHVLWSEDL  168 (1189)
T ss_pred             EEEEeeecccHHH--HHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee----cchhcchheccceeecccH
Confidence            9999875432111  0111122334556666  456777777777655433322110    001111 123456688887


Q ss_pred             ceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCC-CceeeeeeEEEE--------cCCCCeEEEecCCCeEEEEe
Q 019384          201 TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAG-RDIVYPVNAIAF--------HPIYGTFATGGCDGFVNVWD  271 (342)
Q Consensus       201 ~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~-~~~~~~v~~v~~--------sp~~~~l~sgs~Dg~I~iWd  271 (342)
                      ..++.+-..+..  .++|...... ++..+.+.-..... ..-...|..+.|        -|+...|+.+-..|.+.|-.
T Consensus       169 ~~~Lf~~ange~--hlydnqgnF~-~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR  245 (1189)
T KOG2041|consen  169 EQALFKKANGET--HLYDNQGNFE-RKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR  245 (1189)
T ss_pred             HHHHhhhcCCcE--EEecccccHH-HhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence            766666666654  4477543221 11111110000000 000011223332        25788999999999998875


Q ss_pred             CCC-ceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          272 GNN-KKRLYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       272 ~~~-~~~~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      -++ ..++-.-.+  -.|..+.|+++|..||+++.+
T Consensus       246 ~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  246 SENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             hcCCCCCeEEecc--cEeecceecCCCcEEEEccCc
Confidence            443 222221122  468899999999999998864

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.42  E-value=8.8e-05  Score=69.04  Aligned_cols=191  Identities=9%  Similarity=-0.011  Sum_probs=113.5

Q ss_pred             CeEEEEEcCCCCe-EEEEeCC---CcEEEEECCCceeeeeeecCCceEEEEEeCCCCe--EEEecCC--cEEEEEeccCc
Q 019384           21 GISNLRFSNHSDH-LLVSSWD---KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG--FSASADH--TVRRLVFSHGK   92 (342)
Q Consensus        21 ~V~~l~fs~~~~~-l~s~s~D---gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~--~s~s~D~--~i~~w~~~~~~   92 (342)
                      .+..-+|||||+. ++-.+.+   ..|.++|+.+++........+......|+||+..  ++.+.++  .|.++++.++.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            5678999999985 6644544   4688888888765555445666777889988753  2444444  46566666666


Q ss_pred             eeecccCCcceeEEEEeCCCCEEEEee-CCC--cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC----
Q 019384           93 EDILGKHDAPVRCIEYSYAAGQVITGS-WDK--SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG----  165 (342)
Q Consensus        93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs-~D~--~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d----  165 (342)
                      ...+..+........|+|||+.|+-.+ ..+  .|.+.|+.++..  ......  .. ....++++++.++..+..    
T Consensus       269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~--g~-~~~~~SPDG~~Ia~~~~~~~~~  343 (419)
T PRK04043        269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFH--GK-NNSSVSTYKNYIVYSSRETNNE  343 (419)
T ss_pred             EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeCccC--CC-cCceECCCCCEEEEEEcCCCcc
Confidence            554544443334567999998775444 333  566667764332  111111  11 123688888877766543    


Q ss_pred             -----CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeech
Q 019384          166 -----RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLS  220 (342)
Q Consensus       166 -----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~  220 (342)
                           ..|.+.|+.++....  ....  .......|+|+|+.++..+. .+...+..+++.
T Consensus       344 ~~~~~~~I~v~d~~~g~~~~--LT~~--~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        344 FGKNTFNLYLISTNSDYIRR--LTAN--GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             cCCCCcEEEEEECCCCCeEE--CCCC--CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence                 257778887653221  1111  12234679999998766553 344445555553

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.41  E-value=0.00028  Score=71.75  Aligned_cols=264  Identities=19%  Similarity=0.203  Sum_probs=142.2

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeC---C---CcEEEEECCCceeeeeeec-CCceEEEEEeCCCCeEEEecC----CcEEEE
Q 019384           18 PSDGISNLRFSNHSDHLLVSSW---D---KSVRLYDASANVLRGEFMH-GGPVLDCCFHDDSSGFSASAD----HTVRRL   86 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~---D---gti~vwd~~~~~~~~~~~h-~~~V~~~~~~~~~~~~s~s~D----~~i~~w   86 (342)
                      ..++-..|+|-.||.++|..+.   +   .++|||+-. |.+...... .+--.+++|-|.+.+++++.-    ..|..|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence            4567788999999999998775   3   578899876 444332211 111246788888887765532    233333


Q ss_pred             EeccCc--eeec--ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---CCeE
Q 019384           87 VFSHGK--EDIL--GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---GNRL  159 (342)
Q Consensus        87 ~~~~~~--~~~~--~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~~~~  159 (342)
                      .-..-+  +..+  ......|..++|+.|++.||..-.|. |.+|-..+..=...+.+. +.....+..+.++   +..+
T Consensus       287 ErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~-~~~~~~~~~~~Wdpe~p~~L  364 (928)
T PF04762_consen  287 ERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR-FSSSESVNFVKWDPEKPLRL  364 (928)
T ss_pred             ecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE-ccCCCCCCceEECCCCCCEE
Confidence            322111  1122  24556799999999999888766555 999986543210011111 1112222224444   4467


Q ss_pred             EEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCC
Q 019384          160 VVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAG  239 (342)
Q Consensus       160 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~  239 (342)
                      ...+.++.+..+++.-.-.    .         +-...|++...+....+.++.  +..++..--+.-.   ++...   
T Consensus       365 ~v~t~~g~~~~~~~~~~v~----~---------s~~~~~~D~g~vaVIDG~~ll--lTpf~~a~VPPPM---s~~~l---  423 (928)
T PF04762_consen  365 HVLTSNGQYEIYDFAWDVS----R---------SPGSSPNDNGTVAVIDGNKLL--LTPFRRAVVPPPM---SSYEL---  423 (928)
T ss_pred             EEEecCCcEEEEEEEEEEE----e---------cCCCCccCceEEEEEeCCeEE--EecccccCCCchH---hceEE---
Confidence            7777767766655421000    0         000112222222222233332  3333222111110   01110   


Q ss_pred             CceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCce--------eeeccC----------CCCcceEEEEECCCCCEEE
Q 019384          240 RDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK--------RLYQYS----------KYPTSIAALSFSRDGRLLA  301 (342)
Q Consensus       240 ~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~--------~~~~~~----------~~~~~V~~v~~spdg~~la  301 (342)
                       ....+|++++|++++..+++-..||+|.+|......        ....+.          .-...+..++|-.+..+++
T Consensus       424 -~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (928)
T PF04762_consen  424 -ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLV  502 (928)
T ss_pred             -cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEE
Confidence             112369999999999889999999999999843221        111111          1234578899988887776


Q ss_pred             EEEec
Q 019384          302 VASSY  306 (342)
Q Consensus       302 s~s~~  306 (342)
                      ..+..
T Consensus       503 ~~~~~  507 (928)
T PF04762_consen  503 LSDSD  507 (928)
T ss_pred             EEecC
Confidence            66553

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.39  E-value=3.6e-06  Score=71.78  Aligned_cols=199  Identities=14%  Similarity=0.275  Sum_probs=115.1

Q ss_pred             CcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceee---eeecC----------CCCcEEEEecc----CCeEEEE
Q 019384          100 DAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTL---VGTYP----------QPERVYSLSLV----GNRLVVA  162 (342)
Q Consensus       100 ~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~---~~~~~----------~~~~v~~~s~~----~~~~~~~  162 (342)
                      .+.|+++.|...|.+|+||...|.+.++.-+...+.....   ++.+.          ....+..+.+.    .+.++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            3568999999888999999888999999754322211111   12111          11223333332    2478889


Q ss_pred             EcCCeEEEEeCCCCCC------------------c-----------------------ccccccccceeeEEEEEeeCCc
Q 019384          163 TAGRHVNVYDLRNMSQ------------------P-----------------------EQRRESSLKYQTRCVRCYPNGT  201 (342)
Q Consensus       163 s~d~~v~iwd~~~~~~------------------~-----------------------~~~~~~~~~~~~~~v~~~~~~~  201 (342)
                      +.|++|++|.+.....                  +                       .+.....++++++++++..+.+
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            9999999998865310                  0                       0011123445566777666655


Q ss_pred             eEEEEccCCeEEEEEeechhhhhcc-cceeeeEEecCCCCceeeeeeEEEEcCCC-CeEEEecCCCeEEEEeCCCc----
Q 019384          202 GYALSSVEGRVAMEFFDLSEASQAK-KYAFKCHRKSEAGRDIVYPVNAIAFHPIY-GTFATGGCDGFVNVWDGNNK----  275 (342)
Q Consensus       202 ~~~~~s~~~~~~i~~~d~~~~~~~~-~~~~~~h~~~~~~~~~~~~v~~v~~sp~~-~~l~sgs~Dg~I~iWd~~~~----  275 (342)
                      .++ .+.+-  +|.+|++.-..+.. ...++.|.-    .+.+..|++..|||.. ..+.-.+..|+|++-|++..    
T Consensus       186 t~l-SaDdL--rINLWnl~i~D~sFnIVDiKP~nm----eeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd  258 (460)
T COG5170         186 TLL-SADDL--RINLWNLEIIDGSFNIVDIKPHNM----EELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD  258 (460)
T ss_pred             eee-eccce--eeeeccccccCCceEEEeccCccH----HHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence            444 34444  44557764221110 011111110    1223357888999974 45666778999999998721    


Q ss_pred             --eeeec----------cCCCCcceEEEEECCCCCEEEEEEe
Q 019384          276 --KRLYQ----------YSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       276 --~~~~~----------~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                        +.+..          +.+-.+.|.++.|||.|+|+++-+.
T Consensus       259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy  300 (460)
T COG5170         259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY  300 (460)
T ss_pred             CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc
Confidence              11111          1233467899999999999988765

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=4.2e-06  Score=74.69  Aligned_cols=218  Identities=14%  Similarity=0.044  Sum_probs=131.8

Q ss_pred             eecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc----eeecccCCcceeEEEEeCCCCEEEEeeC-CCcEEEEcCCC
Q 019384           57 FMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK----EDILGKHDAPVRCIEYSYAAGQVITGSW-DKSLKCWDPRG  131 (342)
Q Consensus        57 ~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~----~~~~~~h~~~V~~~~~~~~~~~l~sgs~-D~~I~iWd~~~  131 (342)
                      +.|.+.|+-|.-....-.++|+.||.++.|--..-.    ...+..|-..|.+++.+.++-++.|.+. |+.+|++|+++
T Consensus         6 ymhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    6 YMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             hcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            458888877776666667899999999999644312    1235668888999999999988999777 99999999875


Q ss_pred             CCCcceeeeeecCCCCcEEEEecc-CC---eEEEE-EcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEE
Q 019384          132 ASGQERTLVGTYPQPERVYSLSLV-GN---RLVVA-TAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS  206 (342)
Q Consensus       132 ~~~~~~~~~~~~~~~~~v~~~s~~-~~---~~~~~-s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  206 (342)
                      ..-..  .+...-.+..+ ++... ++   .+++. ..++.+.++|-+...++......-+..++.++...+.+..+++.
T Consensus        86 ~Dmin--miKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi  162 (558)
T KOG0882|consen   86 FDMIN--MIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI  162 (558)
T ss_pred             cchhh--hcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence            33211  11111122222 23222 22   33333 34467999997765433222222222345666777777777766


Q ss_pred             ccCCeEEEEEeechhhhhcc----cceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeee
Q 019384          207 SVEGRVAMEFFDLSEASQAK----KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLY  279 (342)
Q Consensus       207 s~~~~~~i~~~d~~~~~~~~----~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~  279 (342)
                      ...|.+  ..|......+..    .+.++...........-....++.|+|++..+.+-+.|..|++++..+++.++
T Consensus       163 D~~gmV--EyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq  237 (558)
T KOG0882|consen  163 DISGMV--EYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ  237 (558)
T ss_pred             ccccee--EeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence            666654  678875321111    11111100000000000135678999999999999999999999988765544

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.35  E-value=1.1e-06  Score=84.28  Aligned_cols=214  Identities=16%  Similarity=0.189  Sum_probs=137.2

Q ss_pred             eeecCCceEEEEEe-CCCCeEEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEe-eCCC-cEEEEcCCC
Q 019384           56 EFMHGGPVLDCCFH-DDSSGFSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITG-SWDK-SLKCWDPRG  131 (342)
Q Consensus        56 ~~~h~~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sg-s~D~-~I~iWd~~~  131 (342)
                      ...|....+|++|+ ....++.|+..|.|+++.+.++. +.....|..+|+-+.-+.+|...++. ++.. -..+|+..+
T Consensus      1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred             hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence            34577888999998 45567799999999999998887 45677899999999988898766554 4444 468999865


Q ss_pred             CCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccc--cccceeeEEEEEeeCCceEEEEccC
Q 019384          132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRE--SSLKYQTRCVRCYPNGTGYALSSVE  209 (342)
Q Consensus       132 ~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~s~~  209 (342)
                      . ...+..+.    ....+.|+-.-..-+.++......+||+.+.........  ....+.-++..|+|++..++-   |
T Consensus      1177 ~-~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---d 1248 (1516)
T KOG1832|consen 1177 T-GGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---D 1248 (1516)
T ss_pred             c-cCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---C
Confidence            2 22111111    122333443322334566667789999998754322121  122334467789999876653   2


Q ss_pred             CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceE
Q 019384          210 GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIA  289 (342)
Q Consensus       210 ~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~  289 (342)
                      |    -+||.+......++.--.-            --.=.|||.|..++.-++     |||+++.+.++....-.  =.
T Consensus      1249 G----vLWDvR~~~aIh~FD~ft~------------~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc 1305 (1516)
T KOG1832|consen 1249 G----VLWDVRIPEAIHRFDQFTD------------YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QC 1305 (1516)
T ss_pred             c----eeeeeccHHHHhhhhhhee------------cccccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ce
Confidence            3    3699876544443321100            001259999999988874     89999987776554322  25


Q ss_pred             EEEECCCCCEE
Q 019384          290 ALSFSRDGRLL  300 (342)
Q Consensus       290 ~v~~spdg~~l  300 (342)
                      .+.|+..|..+
T Consensus      1306 ~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1306 AVTFNSTGDVM 1316 (1516)
T ss_pred             EEEeccCccch
Confidence            77888887754

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.31  E-value=0.0003  Score=64.74  Aligned_cols=195  Identities=16%  Similarity=0.212  Sum_probs=115.6

Q ss_pred             CCCCCCeEEEEEcCCC--CeEE-----EEeCCCcEEEEECCCceeeee-----eecCCceEEEEEeCCCC--eEEEec--
Q 019384           16 NPPSDGISNLRFSNHS--DHLL-----VSSWDKSVRLYDASANVLRGE-----FMHGGPVLDCCFHDDSS--GFSASA--   79 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~--~~l~-----s~s~Dgti~vwd~~~~~~~~~-----~~h~~~V~~~~~~~~~~--~~s~s~--   79 (342)
                      ..|..+|+.+.+||.+  ..+|     +.|.=..+|||....+.....     +...+. ....|...++  ++.++.  
T Consensus       162 kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadk-vqm~WN~~gt~LLvLastdV  240 (566)
T KOG2315|consen  162 KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADK-VQMKWNKLGTALLVLASTDV  240 (566)
T ss_pred             eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccce-eEEEeccCCceEEEEEEEee
Confidence            3567899999999863  3454     356778999999863221111     111112 2344543332  233332  


Q ss_pred             C---------CcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEe--eCCCcEEEEcCCCCCCcceeeeeecCCCCc
Q 019384           80 D---------HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITG--SWDKSLKCWDPRGASGQERTLVGTYPQPER  148 (342)
Q Consensus        80 D---------~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg--s~D~~I~iWd~~~~~~~~~~~~~~~~~~~~  148 (342)
                      |         .++.++.+.......-..-.++|.++.|++++..|+.+  -.=.++.|+|++.   ..  .+...+.+..
T Consensus       241 Dktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~---~~--v~df~egpRN  315 (566)
T KOG2315|consen  241 DKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG---KP--VFDFPEGPRN  315 (566)
T ss_pred             cCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC---CE--eEeCCCCCcc
Confidence            2         23455555422222222336899999999999887654  4446899999863   11  1222233444


Q ss_pred             EEEEeccCCeEEEEEcC---CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEE----EEEeech
Q 019384          149 VYSLSLVGNRLVVATAG---RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA----MEFFDLS  220 (342)
Q Consensus       149 v~~~s~~~~~~~~~s~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~----i~~~d~~  220 (342)
                      ..-+++.++.++.|+-+   |.|-+||+.+.+.. .+...   ...+-+.|+|+|.++++++..-+.+    +++|+..
T Consensus       316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i-~~~~a---~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI-AKFKA---ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             ceEECCCCCEEEEeecCCCCCceEEEeccchhhc-ccccc---CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            45577888888888777   68999999885332 11111   2345678999999999887653322    2556653

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.30  E-value=0.0002  Score=66.40  Aligned_cols=230  Identities=15%  Similarity=0.094  Sum_probs=122.7

Q ss_pred             CCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecccCCcc------ee
Q 019384           31 SDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAP------VR  104 (342)
Q Consensus        31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~------V~  104 (342)
                      +..+..++.+|.+.-+|..+++++....-.+.+.+.-...++.++.++.++.+..+|..+++..--.....+      ..
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~  199 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGES  199 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCC
Confidence            456777888999999999988766554444444332222356677788888888888888774311110000      00


Q ss_pred             EEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCc------E-EEEeccCCeEEEEEcCCeEEEEeCCCCC
Q 019384          105 CIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPER------V-YSLSLVGNRLVVATAGRHVNVYDLRNMS  177 (342)
Q Consensus       105 ~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~------v-~~~s~~~~~~~~~s~d~~v~iwd~~~~~  177 (342)
                      +-..  .++.++.++.++.+...|.+++...-............      + ..-...++.+++++.++.+..+|+.+++
T Consensus       200 sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~  277 (394)
T PRK11138        200 APAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ  277 (394)
T ss_pred             CCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence            1111  23456677788988888877543211111100000000      0 0111235677778888999999998875


Q ss_pred             CcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCe
Q 019384          178 QPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGT  257 (342)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~  257 (342)
                      ..-......    ...+  ...+..+++.+.++.+  ..+|..+...  .|....  .  ...    ...+.+.  .+..
T Consensus       278 ~~W~~~~~~----~~~~--~~~~~~vy~~~~~g~l--~ald~~tG~~--~W~~~~--~--~~~----~~~sp~v--~~g~  337 (394)
T PRK11138        278 IVWKREYGS----VNDF--AVDGGRIYLVDQNDRV--YALDTRGGVE--LWSQSD--L--LHR----LLTAPVL--YNGY  337 (394)
T ss_pred             EEEeecCCC----ccCc--EEECCEEEEEcCCCeE--EEEECCCCcE--EEcccc--c--CCC----cccCCEE--ECCE
Confidence            432211110    0011  1234455566666654  3466543321  121100  0  000    0111111  2567


Q ss_pred             EEEecCCCeEEEEeCCCceeeeccC
Q 019384          258 FATGGCDGFVNVWDGNNKKRLYQYS  282 (342)
Q Consensus       258 l~sgs~Dg~I~iWd~~~~~~~~~~~  282 (342)
                      |+.++.||.|++.|..+++.+.+..
T Consensus       338 l~v~~~~G~l~~ld~~tG~~~~~~~  362 (394)
T PRK11138        338 LVVGDSEGYLHWINREDGRFVAQQK  362 (394)
T ss_pred             EEEEeCCCEEEEEECCCCCEEEEEE
Confidence            8889999999999999998876654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=5.3e-06  Score=74.05  Aligned_cols=196  Identities=18%  Similarity=0.167  Sum_probs=115.4

Q ss_pred             cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeee---cCCCCcEEEEeccCCeEEEEEc-CCeEEEEeC
Q 019384           98 KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGT---YPQPERVYSLSLVGNRLVVATA-GRHVNVYDL  173 (342)
Q Consensus        98 ~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~---~~~~~~v~~~s~~~~~~~~~s~-d~~v~iwd~  173 (342)
                      -|.+.|+-+..+ ..+.++++|.||.+|.|....-.+.  ..+..   +.......+++.++-.+.+... |..++++|+
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGv--EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGV--EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccce--eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence            377778777655 4678999999999999985421221  11111   1112222344555556666555 889999999


Q ss_pred             CCCCCcccccccccceeeEEEEEeeCC-ceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384          174 RNMSQPEQRRESSLKYQTRCVRCYPNG-TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH  252 (342)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  252 (342)
                      .+...........++...+++ .++.. ...+..+.-.+..+.++|.........+.-         ..|..||..+.+.
T Consensus        84 En~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk---------klH~sPV~~i~y~  153 (558)
T KOG0882|consen   84 ENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK---------KLHFSPVKKIRYN  153 (558)
T ss_pred             eccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceec---------ccccCceEEEEee
Confidence            886554322222233222222 12221 112222322233455688654432222211         1334489999999


Q ss_pred             CCCCeEEEecCCCeEEEEeCCC------cee---------eeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          253 PIYGTFATGGCDGFVNVWDGNN------KKR---------LYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       253 p~~~~l~sgs~Dg~I~iWd~~~------~~~---------~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      |.+..+++....|.|..|..+.      .+.         +..+..-.....++.|+|+|..+++-+.+
T Consensus       154 qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D  222 (558)
T KOG0882|consen  154 QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD  222 (558)
T ss_pred             ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence            9999999999999999998762      111         11223345677899999999999887653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.27  E-value=0.0017  Score=65.27  Aligned_cols=199  Identities=10%  Similarity=0.087  Sum_probs=114.6

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EEecCCcEEEEEecc-------
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SASADHTVRRLVFSH-------   90 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s~D~~i~~w~~~~-------   90 (342)
                      .+.|.++.|-.+...+..+..+|.|.+-|..+..+...-.-.+.|.+++|+++.+++ .++.++++.+....-       
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            369999999999999999999999999998776543333467889999999888764 566666664433210       


Q ss_pred             ----------------Cc-eeeccc------------CCc---------ceeEEEEeCCCCEEEE-----eeCCCcEEEE
Q 019384           91 ----------------GK-EDILGK------------HDA---------PVRCIEYSYAAGQVIT-----GSWDKSLKCW  127 (342)
Q Consensus        91 ----------------~~-~~~~~~------------h~~---------~V~~~~~~~~~~~l~s-----gs~D~~I~iW  127 (342)
                                      ++ +.-+.|            |..         .=.++.|-.||++|+.     ....+.|++|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence                            00 000110            111         1135888889988876     3333799999


Q ss_pred             cCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEE---EcCCeEEEEeCCCCCCccccccccccee-eEEEEEeeCCceE
Q 019384          128 DPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVA---TAGRHVNVYDLRNMSQPEQRRESSLKYQ-TRCVRCYPNGTGY  203 (342)
Q Consensus       128 d~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~---s~d~~v~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~  203 (342)
                      |.+ +..  ..............++-+.|..+++.   +.|++|.+|.-.......-...-+.... +..++|..++..+
T Consensus       228 drE-g~L--ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiL  304 (1265)
T KOG1920|consen  228 DRE-GAL--NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDIL  304 (1265)
T ss_pred             ccc-chh--hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCce
Confidence            965 211  11111111223344555556655543   4445788887433221111111112222 5678898888877


Q ss_pred             EEEccCCe-EEEEEeech
Q 019384          204 ALSSVEGR-VAMEFFDLS  220 (342)
Q Consensus       204 ~~~s~~~~-~~i~~~d~~  220 (342)
                      ++-..... -.+++|.+.
T Consensus       305 Av~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  305 AVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             eeeecccccceEEEEEec
Confidence            76322211 125677763

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.17  E-value=0.00059  Score=62.26  Aligned_cols=261  Identities=14%  Similarity=0.129  Sum_probs=136.6

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeeeecCCceEEEEEeCCCCeE-EEecC---------------C
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEFMHGGPVLDCCFHDDSSGF-SASAD---------------H   81 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~~h~~~V~~~~~~~~~~~~-s~s~D---------------~   81 (342)
                      .-.+..++|||-|.+|++.-.-| |.+|+-.... +..+ -| ..|..+.|+|.+..+ +-+..               +
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~-~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n  108 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF-RH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN  108 (561)
T ss_pred             CcchhheeecCcchheehhhccc-eEEccccchhheeee-ec-CCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence            34678899999999998765554 8899875543 3332 23 456777777766544 32222               2


Q ss_pred             cEEEEEeccCce-eecccCCcc--ee-EEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC
Q 019384           82 TVRRLVFSHGKE-DILGKHDAP--VR-CIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN  157 (342)
Q Consensus        82 ~i~~w~~~~~~~-~~~~~h~~~--V~-~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~  157 (342)
                      .+.+||..++.. ..+.+-..+  .+ -+.|+.++.++|-. .-..+.++++ ++... ...+.... ...+..+++++.
T Consensus       109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~-~~p~~~lr-~~gi~dFsisP~  184 (561)
T COG5354         109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE-EHPFKNLR-PVGILDFSISPE  184 (561)
T ss_pred             ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc-cCchhhcc-ccceeeEEecCC
Confidence            367888887763 233333323  44 57788777766433 2346888885 22111 11111111 123344444332


Q ss_pred             ----eEEE-----EEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC---------CeEEEEEeec
Q 019384          158 ----RLVV-----ATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE---------GRVAMEFFDL  219 (342)
Q Consensus       158 ----~~~~-----~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~---------~~~~i~~~d~  219 (342)
                          .|+.     ......+++|.+...+...++.  -....-..+.|.+.|..+++-..-         +...++++++
T Consensus       185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~--lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~  262 (561)
T COG5354         185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN--LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI  262 (561)
T ss_pred             CCCceEEEEccccCCCCcEEEEEEccCCCeeeeee--eEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence                3333     2334578888876443222111  111122345677777766543221         1123455555


Q ss_pred             hhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEec--CCCeEEEEeCCCceeeeccCCCCcceEEEEECCCC
Q 019384          220 SEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGG--CDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDG  297 (342)
Q Consensus       220 ~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs--~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg  297 (342)
                      .+.      .++...      +...+|...+|.|.+..+++.+  .+-.+.++|++.. ....+..  ..=+.+-|||.+
T Consensus       263 ~e~------~i~V~~------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe--~~rNT~~fsp~~  327 (561)
T COG5354         263 TER------SIPVEK------DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPE--QKRNTIFFSPHE  327 (561)
T ss_pred             ccc------ccceec------cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCC--cccccccccCcc
Confidence            321      111110      1224799999999998776544  6778888887753 2222221  111344455555


Q ss_pred             CEEEEE
Q 019384          298 RLLAVA  303 (342)
Q Consensus       298 ~~las~  303 (342)
                      +|++.+
T Consensus       328 r~il~a  333 (561)
T COG5354         328 RYILFA  333 (561)
T ss_pred             cEEEEe
Confidence            554443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.17  E-value=5.8e-06  Score=71.47  Aligned_cols=142  Identities=12%  Similarity=0.139  Sum_probs=97.5

Q ss_pred             CCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeC-CCCeEEEecCCcEEEEEeccCcee-----ecccCCccee
Q 019384           31 SDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHD-DSSGFSASADHTVRRLVFSHGKED-----ILGKHDAPVR  104 (342)
Q Consensus        31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~-~~~~~s~s~D~~i~~w~~~~~~~~-----~~~~h~~~V~  104 (342)
                      +.+ ++.+.+.-|-|-|+.++.... +..++.|.+..|.. +..++.|+-.|.|...|+..+...     ...-|...|+
T Consensus       225 gyh-fs~G~sqqv~L~nvetg~~qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvt  302 (425)
T KOG2695|consen  225 GYH-FSVGLSQQVLLTNVETGHQQS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVT  302 (425)
T ss_pred             eee-ecccccceeEEEEeecccccc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchh
Confidence            444 667778888888888764333 33677899999974 666778899999999999876421     2234888999


Q ss_pred             EEEEeC-CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC----cE-EEEeccCCeEEEEEcCCeEEEEeCCCC
Q 019384          105 CIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE----RV-YSLSLVGNRLVVATAGRHVNVYDLRNM  176 (342)
Q Consensus       105 ~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~----~v-~~~s~~~~~~~~~s~d~~v~iwd~~~~  176 (342)
                      |+..-. +++.|++++.+|+|++||++.....  ..+..++.+.    .. .-+......+++++.|-..|||.++.+
T Consensus       303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~--~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g  378 (425)
T KOG2695|consen  303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCK--KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG  378 (425)
T ss_pred             hhhhhccccceEeeccCcCceeEeeehhhhcc--cceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence            987766 6788999999999999999853221  1122222211    11 112222336777888888999999875

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.15  E-value=1.9e-05  Score=65.85  Aligned_cols=147  Identities=16%  Similarity=0.169  Sum_probs=86.0

Q ss_pred             CCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeE----EEEEeechh
Q 019384          146 PERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRV----AMEFFDLSE  221 (342)
Q Consensus       146 ~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~----~i~~~d~~~  221 (342)
                      +.....++.-++.++++..|+.+.+++.++..+. ..+.........+.+....+..+.++... .+    ..+.|++..
T Consensus        91 p~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~-~~~i~~~~~~~as~~~~~~~~~i~s~~~g-~~n~~d~~~a~~~~p  168 (319)
T KOG4714|consen   91 IDPNDACTMTDNRVCIGYADGSLAVFSTDKDLAL-MSRIPSIHSGSASRKICRHGNSILSGGCG-NWNAQDNFYANTLDP  168 (319)
T ss_pred             CCCcccccccCCceEecCCCceEEEEechHHHhh-hhhcccccccccccceeecccEEecCCcc-eEeeccceeeecccc
Confidence            3334445556778999999999999998763211 11111111111112222233333222211 11    123455432


Q ss_pred             hhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCCceee-eccCCCCcceEEEEECC-CCC
Q 019384          222 ASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNNKKRL-YQYSKYPTSIAALSFSR-DGR  298 (342)
Q Consensus       222 ~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~~~~~-~~~~~~~~~V~~v~~sp-dg~  298 (342)
                      .    ...+..+...       ..|.+++-+|..+ .+++|+.||.+.+||.++.... -.++.|..+++-+-|.| ++.
T Consensus       169 ~----~t~~~~~~~~-------~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~  237 (319)
T KOG4714|consen  169 I----KTLIPSKKAL-------DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE  237 (319)
T ss_pred             c----cccccccccc-------ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch
Confidence            1    1112222221       1488999999865 5688899999999999987544 35678999999999998 566


Q ss_pred             EEEEEEe
Q 019384          299 LLAVASS  305 (342)
Q Consensus       299 ~las~s~  305 (342)
                      .|.+++.
T Consensus       238 ~Lft~se  244 (319)
T KOG4714|consen  238 HLFTCSE  244 (319)
T ss_pred             heeEecC
Confidence            8888876

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.13  E-value=0.0018  Score=59.02  Aligned_cols=100  Identities=13%  Similarity=0.106  Sum_probs=63.9

Q ss_pred             cCCCCeEEEE---------eCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecc-
Q 019384           28 SNHSDHLLVS---------SWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILG-   97 (342)
Q Consensus        28 s~~~~~l~s~---------s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~-   97 (342)
                      |||+++++..         +..+.+.|||+.+++..........+....|+|++..+.-..++.|.+.+..++....+. 
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~   80 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTT   80 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEecc
Confidence            5777776652         345788999999887665544466788999999999888888888888877665432221 


Q ss_pred             -c-------C---------CcceeEEEEeCCCCEEEEeeCC-CcEEEE
Q 019384           98 -K-------H---------DAPVRCIEYSYAAGQVITGSWD-KSLKCW  127 (342)
Q Consensus        98 -~-------h---------~~~V~~~~~~~~~~~l~sgs~D-~~I~iW  127 (342)
                       +       -         -+.-..+-|+||+++|+....| ..++.+
T Consensus        81 dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~  128 (353)
T PF00930_consen   81 DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY  128 (353)
T ss_dssp             --TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred             ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceE
Confidence             1       0         1122457899999988765554 344443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.12  E-value=0.0043  Score=52.89  Aligned_cols=107  Identities=10%  Similarity=0.075  Sum_probs=60.2

Q ss_pred             cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC----CCCcEEEEecc--------CCeEEEEEcCCeE
Q 019384          101 APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP----QPERVYSLSLV--------GNRLVVATAGRHV  168 (342)
Q Consensus       101 ~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~----~~~~v~~~s~~--------~~~~~~~s~d~~v  168 (342)
                      .+=+-++|+||+..||.+...|+|+++|+.....  ...-....    ....+..+.+-        ...+++....|.+
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l--f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L  121 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL--FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL  121 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEeccccee--EEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence            4456799999999999999999999999863221  11101110    01112222221        1256777788888


Q ss_pred             EEEeCCCCCCcccc------cccccceeeEEEEEeeCCceEEEEccC
Q 019384          169 NVYDLRNMSQPEQR------RESSLKYQTRCVRCYPNGTGYALSSVE  209 (342)
Q Consensus       169 ~iwd~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~s~~  209 (342)
                      +-|-+..+....-.      .....+..++++.++|..+.+++++..
T Consensus       122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~  168 (282)
T PF15492_consen  122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCE  168 (282)
T ss_pred             eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccC
Confidence            77765332111000      011223346777788887777766543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=0.0006  Score=65.96  Aligned_cols=205  Identities=15%  Similarity=0.138  Sum_probs=111.7

Q ss_pred             CCCCeEEEecCCcEEEEEeccCceeecccCCcc-eeEEEEeCCCCEEEEeeCCC-----cEEEEcCCCCCCcc-eeee--
Q 019384           70 DDSSGFSASADHTVRRLVFSHGKEDILGKHDAP-VRCIEYSYAAGQVITGSWDK-----SLKCWDPRGASGQE-RTLV--  140 (342)
Q Consensus        70 ~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~-V~~~~~~~~~~~l~sgs~D~-----~I~iWd~~~~~~~~-~~~~--  140 (342)
                      ..+.++.|+.+|.|.+++-......-+..+... |..+-...+...|+|.+.|.     .+++||++...+.. ...+  
T Consensus        34 ~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~  113 (933)
T KOG2114|consen   34 STGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYE  113 (933)
T ss_pred             CCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeee
Confidence            445567888888876655433222334444433 44443333345778877775     48999987542221 1222  


Q ss_pred             ---eec-----CCCCcEEEEeccCCeEEEEEcCCeEEEEe--CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCC
Q 019384          141 ---GTY-----PQPERVYSLSLVGNRLVVATAGRHVNVYD--LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEG  210 (342)
Q Consensus       141 ---~~~-----~~~~~v~~~s~~~~~~~~~s~d~~v~iwd--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~  210 (342)
                         ...     ..+..+..++.+-..+++|..+|.|.++.  +...+.......+..+..++.+++..+++.++....-.
T Consensus       114 ~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~  193 (933)
T KOG2114|consen  114 HRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTE  193 (933)
T ss_pred             eeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecc
Confidence               111     12334455555666899999999988874  21111112222334556788888887777633333333


Q ss_pred             eEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC-CCCcc
Q 019384          211 RVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS-KYPTS  287 (342)
Q Consensus       211 ~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~-~~~~~  287 (342)
                      .|.  .|.+.... +..-.+.         .+..+++|..|++....+++|+ +.-+.+||....+.-..+. +|...
T Consensus       194 ~V~--~y~l~gr~-p~~~~ld---------~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~  258 (933)
T KOG2114|consen  194 QVM--LYSLSGRT-PSLKVLD---------NNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKE  258 (933)
T ss_pred             eeE--EEEecCCC-cceeeec---------cCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEE
Confidence            443  45554221 1111111         1223688999998766344443 2379999988655555555 66543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.0021  Score=62.41  Aligned_cols=192  Identities=16%  Similarity=0.215  Sum_probs=116.8

Q ss_pred             CeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCC--CeEEEecCC-----cEEEEEeccCc-
Q 019384           21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDS--SGFSASADH-----TVRRLVFSHGK-   92 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~--~~~s~s~D~-----~i~~w~~~~~~-   92 (342)
                      .|.  +|++.+..++-|+.||.|-+.+-.-..+....++...+....+..++  .+++.+.|.     .+++|+++..+ 
T Consensus        27 ~is--c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~  104 (933)
T KOG2114|consen   27 AIS--CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK  104 (933)
T ss_pred             cee--EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence            555  45788999999999999888876544445566676664444444343  345656554     48999987542 


Q ss_pred             ---eeec-----cc-----CCcceeEEEEeCCCCEEEEeeCCCcEEEEc--CCCCCCcceeeeeecCCCCcEEEEec--c
Q 019384           93 ---EDIL-----GK-----HDAPVRCIEYSYAAGQVITGSWDKSLKCWD--PRGASGQERTLVGTYPQPERVYSLSL--V  155 (342)
Q Consensus        93 ---~~~~-----~~-----h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd--~~~~~~~~~~~~~~~~~~~~v~~~s~--~  155 (342)
                         ...+     ..     -..++.+++.+.+-+.++.|-.+|.|..+.  +-...+. +. .-.+.....++.+.+  +
T Consensus       105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~-~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-RQ-DYSHRGKEPITGLALRSD  182 (933)
T ss_pred             CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-ce-eeeccCCCCceeeEEecC
Confidence               1111     12     235678899998888899999999998873  2111111 11 122334445555555  4


Q ss_pred             CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeech
Q 019384          156 GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLS  220 (342)
Q Consensus       156 ~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~  220 (342)
                      +...+.+.....|.+|.+.... +........+...+|.++++....++++..+   .+++||..
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~e---~l~fY~sd  243 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAGSE---FLYFYDSD  243 (933)
T ss_pred             CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEecCc---eEEEEcCC
Confidence            4443444555679999998433 3333333445567787777665545555433   45788874

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.00  E-value=0.00017  Score=69.95  Aligned_cols=180  Identities=19%  Similarity=0.259  Sum_probs=109.9

Q ss_pred             eEEEecCCcEEEEEeccCceeeccc-CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE
Q 019384           74 GFSASADHTVRRLVFSHGKEDILGK-HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL  152 (342)
Q Consensus        74 ~~s~s~D~~i~~w~~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~  152 (342)
                      ++-|+....+...|+.+..+..... -...|.=+.  .+++.+.+|..-|+|.+-|+++...  ...+.  .+...+..+
T Consensus       150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~--iht~~--aHs~siSDf  223 (1118)
T KOG1275|consen  150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFET--IHTFD--AHSGSISDF  223 (1118)
T ss_pred             eeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCce--eeeee--ccccceeee
Confidence            3445555555566666554322211 112243333  3567889999999999999876432  22333  355667889


Q ss_pred             eccCCeEEEEEcCCe---------EEEEeCCCCCCcccccccccceeeEEEEEeeC-CceEEEEccCCeEEEEEeechhh
Q 019384          153 SLVGNRLVVATAGRH---------VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN-GTGYALSSVEGRVAMEFFDLSEA  222 (342)
Q Consensus       153 s~~~~~~~~~s~d~~---------v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~s~~~~~~i~~~d~~~~  222 (342)
                      +..|+.+++|+..+.         |++||+|+.+...-   ..+......+.++|. ...+++++..|...  +.|..+-
T Consensus       224 Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P---I~~~~~P~flrf~Psl~t~~~V~S~sGq~q--~vd~~~l  298 (1118)
T KOG1275|consen  224 DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP---IQFPYGPQFLRFHPSLTTRLAVTSQSGQFQ--FVDTATL  298 (1118)
T ss_pred             eccCCeEEEeecccccccccccchhhhhhhhhhhccCC---cccccCchhhhhcccccceEEEEeccccee--ecccccc
Confidence            999999999988754         78999998754211   112222345566765 23466777777653  4664332


Q ss_pred             hhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEe
Q 019384          223 SQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWD  271 (342)
Q Consensus       223 ~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd  271 (342)
                      ..+..-....|..       ..-+.++.++++++.+|.|..+|.|.+|.
T Consensus       299 sNP~~~~~~v~p~-------~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  299 SNPPAGVKMVNPN-------GSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CCCccceeEEccC-------CCcceeEEecCCCceEEEecccCcEeeec
Confidence            2221111111111       01278899999999999999999999996

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=0.0011  Score=58.95  Aligned_cols=80  Identities=14%  Similarity=0.292  Sum_probs=64.3

Q ss_pred             cCCCCCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEe-CCCC-eEEEecCCcEEEEEec
Q 019384           13 ELGNPPSDGISNLRFSNHSD-HLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFH-DDSS-GFSASADHTVRRLVFS   89 (342)
Q Consensus        13 ~~~~~~~~~V~~l~fs~~~~-~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~-~~~~-~~s~s~D~~i~~w~~~   89 (342)
                      .+...+...|..++|||..+ +|..++.+.+|+|.|+.+......+.-...+++|+|. ++.. ++.|-..|.|.++|++
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            35567778999999999876 7888999999999999887766655444899999997 4444 4566788899999998


Q ss_pred             cCc
Q 019384           90 HGK   92 (342)
Q Consensus        90 ~~~   92 (342)
                      ..+
T Consensus       267 ~~~  269 (463)
T KOG1645|consen  267 QPE  269 (463)
T ss_pred             CCC
Confidence            765

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.92  E-value=0.0058  Score=56.61  Aligned_cols=258  Identities=14%  Similarity=0.136  Sum_probs=133.6

Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEecC-----------CcEEEEEecc
Q 019384           23 SNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSASAD-----------HTVRRLVFSH   90 (342)
Q Consensus        23 ~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D-----------~~i~~w~~~~   90 (342)
                      +-+.|||.|.+|+|=-.-| |.+|--.+-....-+.|. .|.-+.|+|... ++|-|..           ..+++||+.+
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t  291 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT  291 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence            4699999999999977766 789976543333334454 466778887554 4444421           4589999999


Q ss_pred             Ccee-eccc--CCccee-EEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-CCCcEEEEeccC--CeEEEEE
Q 019384           91 GKED-ILGK--HDAPVR-CIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP-QPERVYSLSLVG--NRLVVAT  163 (342)
Q Consensus        91 ~~~~-~~~~--h~~~V~-~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~v~~~s~~~--~~~~~~s  163 (342)
                      +... .+.-  ....++ -..|+.|++++|.-.. .+|.|++..+-     ..+.... ....+-.|++++  +.|+.-+
T Consensus       292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf-----~lld~Kslki~gIr~FswsP~~~llAYwt  365 (698)
T KOG2314|consen  292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF-----MLLDKKSLKISGIRDFSWSPTSNLLAYWT  365 (698)
T ss_pred             cchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce-----eeecccccCCccccCcccCCCcceEEEEc
Confidence            8732 2221  223334 3589999999887655 67888885431     1121111 011233344443  3333222


Q ss_pred             cC-----CeEEEEeCCCCCCcccccccccceeeE--EEEEeeCCceEEEEcc-------CCe-EEEEEeechhhhhcccc
Q 019384          164 AG-----RHVNVYDLRNMSQPEQRRESSLKYQTR--CVRCYPNGTGYALSSV-------EGR-VAMEFFDLSEASQAKKY  228 (342)
Q Consensus       164 ~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~s~-------~~~-~~i~~~d~~~~~~~~~~  228 (342)
                      ..     -++-|..+-+.+....+   .+ .++.  .+-|-.+|.++++--.       .+. -++.++-+++...    
T Consensus       366 pe~~~~parvtL~evPs~~~iRt~---nl-fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI----  437 (698)
T KOG2314|consen  366 PETNNIPARVTLMEVPSKREIRTK---NL-FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI----  437 (698)
T ss_pred             ccccCCcceEEEEecCccceeeec---cc-eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC----
Confidence            11     12333333222111000   00 1111  1223344554432211       000 0112222211100    


Q ss_pred             eeeeEEecCCCCceeeeeeEEEEcCCCCeEEEec---CCCeEEEEeCCC-c---eeeeccCCCCcceEEEEECCCCCEEE
Q 019384          229 AFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGG---CDGFVNVWDGNN-K---KRLYQYSKYPTSIAALSFSRDGRLLA  301 (342)
Q Consensus       229 ~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs---~Dg~I~iWd~~~-~---~~~~~~~~~~~~V~~v~~spdg~~la  301 (342)
                        .     ....++..+|-..+|-|.|..+++-+   .-.++.+|-+++ .   +++..+..  ...+.+-|||.|++++
T Consensus       438 --p-----ve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvv  508 (698)
T KOG2314|consen  438 --P-----VEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVV  508 (698)
T ss_pred             --C-----ceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEE
Confidence              0     00111123577789999999876543   234799998773 2   23334432  4578999999999999


Q ss_pred             EEEe
Q 019384          302 VASS  305 (342)
Q Consensus       302 s~s~  305 (342)
                      ++.-
T Consensus       509 va~l  512 (698)
T KOG2314|consen  509 VAAL  512 (698)
T ss_pred             EEEe
Confidence            8763

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.91  E-value=7.5e-05  Score=62.42  Aligned_cols=75  Identities=19%  Similarity=0.169  Sum_probs=57.0

Q ss_pred             CCCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEECCCcee--eeeeecCCceEEEEEeC--CCCeEEEecCCcEEEEEecc
Q 019384           16 NPPSDGISNLRFSNHS-DHLLVSSWDKSVRLYDASANVL--RGEFMHGGPVLDCCFHD--DSSGFSASADHTVRRLVFSH   90 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~-~~l~s~s~Dgti~vwd~~~~~~--~~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i~~w~~~~   90 (342)
                      ....++|.+++-.|.. ++++.|+.||.+-|||......  .....|+.+++-+.|+|  ...+++++.||.+..||-.+
T Consensus       176 ~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  176 KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            3445679999988865 4566788899999999876532  22347999999999974  45689999999998887554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.90  E-value=0.0012  Score=48.50  Aligned_cols=100  Identities=20%  Similarity=0.194  Sum_probs=70.3

Q ss_pred             eEEEEEcC---CC-CeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecc
Q 019384           22 ISNLRFSN---HS-DHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILG   97 (342)
Q Consensus        22 V~~l~fs~---~~-~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~   97 (342)
                      |+++++..   || +.|+.||.|..||||+-.  .++.+....+.|..++-...++++.+..+|+|-+|+-..+..+.-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKS   79 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKS   79 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeecc
Confidence            67777765   33 579999999999999875  4666777788898888877778888889999888865443333223


Q ss_pred             cCCcceeEEEEeC---CC-CEEEEeeCCCcEE
Q 019384           98 KHDAPVRCIEYSY---AA-GQVITGSWDKSLK  125 (342)
Q Consensus        98 ~h~~~V~~~~~~~---~~-~~l~sgs~D~~I~  125 (342)
                      +|  .+.++++..   || ..|++|-.+|.|-
T Consensus        80 K~--~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   80 KN--QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             CC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            33  366665543   23 2588888888764

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=0.0014  Score=62.98  Aligned_cols=142  Identities=12%  Similarity=0.109  Sum_probs=88.8

Q ss_pred             CCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCC------CCeEEEecCCcEEEEEe---ccCceeecccCC
Q 019384           30 HSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD------SSGFSASADHTVRRLVF---SHGKEDILGKHD  100 (342)
Q Consensus        30 ~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~------~~~~s~s~D~~i~~w~~---~~~~~~~~~~h~  100 (342)
                      +|.+++|||.||+|.|--+-+....+....+-++.+++++|+      ++.++|+.-| +.+..-   .......+..-.
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e  160 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE  160 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence            499999999999999999887777777778889999999876      4567888777 433321   111122344556


Q ss_pred             cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeee--eecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCC
Q 019384          101 APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLV--GTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRN  175 (342)
Q Consensus       101 ~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~--~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~  175 (342)
                      ++|.++.|.  |++||=++ |-.|+++|+.+.........  .......-...+.+.++..++.+-+.+|++..++.
T Consensus       161 G~I~~i~W~--g~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~~  234 (846)
T KOG2066|consen  161 GPIHSIKWR--GNLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIKK  234 (846)
T ss_pred             cceEEEEec--CcEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEec
Confidence            889999985  66676655 45589999864321100000  00000011123445444344455556889888873

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.81  E-value=4.5e-05  Score=66.14  Aligned_cols=115  Identities=9%  Similarity=0.094  Sum_probs=86.8

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-----eeeeeeecCCceEEEEEeC--CCCeEEEecCCcEEEEEeccC
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-----VLRGEFMHGGPVLDCCFHD--DSSGFSASADHTVRRLVFSHG   91 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-----~~~~~~~h~~~V~~~~~~~--~~~~~s~s~D~~i~~w~~~~~   91 (342)
                      +..|.++.|...++++..|+..|.|-..|+..+     ....-+-|...|+++....  +..+++.+.+|+|++||....
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~  331 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT  331 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence            568999999998999999999999999998643     2334456999999988753  444567789999999998765


Q ss_pred             ce----eecccCCcceeEEE--EeCCCCEEEEeeCCCcEEEEcCCCCC
Q 019384           92 KE----DILGKHDAPVRCIE--YSYAAGQVITGSWDKSLKCWDPRGAS  133 (342)
Q Consensus        92 ~~----~~~~~h~~~V~~~~--~~~~~~~l~sgs~D~~I~iWd~~~~~  133 (342)
                      +.    ..+.+|...-.-+-  ..+....+++++.|-.-|||.++.+.
T Consensus       332 K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  332 KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence            43    34677754332222  23455688999999999999987654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.81  E-value=0.0021  Score=54.81  Aligned_cols=185  Identities=16%  Similarity=0.105  Sum_probs=106.2

Q ss_pred             cCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeec--ccC---Ccc
Q 019384           28 SNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDIL--GKH---DAP  102 (342)
Q Consensus        28 s~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~--~~h---~~~  102 (342)
                      .+++.++++++.++.+..||..+++.+..+...+.+.......++.++.++.|+.+..+|..+++..--  ...   ...
T Consensus        33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             EEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             EEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            336677888899999999999998876665545544333344566777888888898899888774311  111   011


Q ss_pred             eeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCC--C-------cEEEEeccCCeEEEEEcCCe-EEEEe
Q 019384          103 VRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQP--E-------RVYSLSLVGNRLVVATAGRH-VNVYD  172 (342)
Q Consensus       103 V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~--~-------~v~~~s~~~~~~~~~s~d~~-v~iwd  172 (342)
                      ........+++.++.+..++.|..+|++++...  .........  .       ....+...++.+..++.++. +.+ |
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d  189 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLL--WKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-D  189 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEEETTTTEEE--EEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-E
T ss_pred             ccccCceEecCEEEEEeccCcEEEEecCCCcEE--EEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-E
Confidence            122222223778888888999999998765331  111111101  0       01233334456777777775 555 9


Q ss_pred             CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhh
Q 019384          173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEA  222 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~  222 (342)
                      +.+++.....   .... ... .....+..+++.+.++.+  ..+|.++.
T Consensus       190 ~~tg~~~w~~---~~~~-~~~-~~~~~~~~l~~~~~~~~l--~~~d~~tG  232 (238)
T PF13360_consen  190 LATGEKLWSK---PISG-IYS-LPSVDGGTLYVTSSDGRL--YALDLKTG  232 (238)
T ss_dssp             TTTTEEEEEE---CSS--ECE-CEECCCTEEEEEETTTEE--EEEETTTT
T ss_pred             CCCCCEEEEe---cCCC-ccC-CceeeCCEEEEEeCCCEE--EEEECCCC
Confidence            9887522111   1111 111 134566667777666654  45887543

...

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.79  E-value=0.021  Score=49.98  Aligned_cols=237  Identities=12%  Similarity=0.078  Sum_probs=125.5

Q ss_pred             cCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceee------------
Q 019384           28 SNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDI------------   95 (342)
Q Consensus        28 s~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~------------   95 (342)
                      ...++.|+.|..+| +.+++...........+...|..+...+.-.++..=.|+.+.++++..-....            
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccccccc
Confidence            34678899999998 89999843333333334455888888776666655567999999876543211            


Q ss_pred             ---cccCCcceeEEE--EeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEE
Q 019384           96 ---LGKHDAPVRCIE--YSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNV  170 (342)
Q Consensus        96 ---~~~h~~~V~~~~--~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~i  170 (342)
                         .......+..++  -...+...+.....++|.+|..................+..+..+.+.++.++.+..+ ...+
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~-~f~~  161 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSK-GFYL  161 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCC-ceEE
Confidence               011223344444  1224445566667779999876542111102233334445566777777887777654 5778


Q ss_pred             EeCCCCCCccccccccc---------ceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCc
Q 019384          171 YDLRNMSQPEQRRESSL---------KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRD  241 (342)
Q Consensus       171 wd~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~  241 (342)
                      .|+.++...........         ......+...+++. ++.+..+.-   .+.|.... ..+...+.-      .  
T Consensus       162 idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~Ll~~~~~g---~fv~~~G~-~~r~~~i~W------~--  228 (275)
T PF00780_consen  162 IDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNE-FLLCYDNIG---VFVNKNGE-PSRKSTIQW------S--  228 (275)
T ss_pred             EecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCce-EEEEecceE---EEEcCCCC-cCcccEEEc------C--
Confidence            88886533211000000         00112222223333 333322211   23444221 111111111      0  


Q ss_pred             eeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCC
Q 019384          242 IVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKY  284 (342)
Q Consensus       242 ~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~  284 (342)
                        ....++++.  ..+|+.-.. +.|.||++.+++.++.+...
T Consensus       229 --~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  229 --SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             --CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence              124456664  345655554 56999999999888776543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.75  E-value=0.0011  Score=61.91  Aligned_cols=111  Identities=17%  Similarity=0.215  Sum_probs=79.9

Q ss_pred             CCCeEEEEEcC-CCCeEEE----EeCCCcEE----EEECCCceeee----eeecCCceEEEEEeCC-CCeEEEecCCcEE
Q 019384           19 SDGISNLRFSN-HSDHLLV----SSWDKSVR----LYDASANVLRG----EFMHGGPVLDCCFHDD-SSGFSASADHTVR   84 (342)
Q Consensus        19 ~~~V~~l~fs~-~~~~l~s----~s~Dgti~----vwd~~~~~~~~----~~~h~~~V~~~~~~~~-~~~~s~s~D~~i~   84 (342)
                      +....++.||- +.+.+.|    .+.+|.+.    +|++...++..    .+-....|.+++++++ ..++.|+.||+|.
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii  284 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII  284 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence            34557888886 4445543    44555544    66665554322    3356788999999865 4567999999999


Q ss_pred             EEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCC
Q 019384           85 RLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR  130 (342)
Q Consensus        85 ~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~  130 (342)
                      +||...+.. .+..+.-..+.++|+|+|..|+.|+.-|.|.+||+.
T Consensus       285 LyD~~~~~t-~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  285 LYDTTRGVT-LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             EEEcCCCee-eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            999866532 233445567889999999999999999999999975

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.72  E-value=0.031  Score=56.62  Aligned_cols=228  Identities=11%  Similarity=0.108  Sum_probs=124.2

Q ss_pred             CceEEEEEe-CCCCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceee
Q 019384           61 GPVLDCCFH-DDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTL  139 (342)
Q Consensus        61 ~~V~~~~~~-~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~  139 (342)
                      +.|.++.|. ...+++.+..+|+|.+-|.++........-...|.+.+|+||.+.++-.+.++++-+=+.. -.......
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD-FEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchhccc
Confidence            578999997 5556778889999988888777655566667889999999999998877777776553211 00000000


Q ss_pred             eeec-CCCCcEEEEeccCC-eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEE---ccCCeEEE
Q 019384          140 VGTY-PQPERVYSLSLVGN-RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS---SVEGRVAM  214 (342)
Q Consensus       140 ~~~~-~~~~~v~~~s~~~~-~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---s~~~~~~i  214 (342)
                      +... ......+.+-+..+ +-+-|+.+ .....+.........  ......+-+.+.|--||+++++.   ...+..++
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~g-r~~~~~~~~~ek~~~--~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki  224 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEG-RQAARQKIEKEKALE--QIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI  224 (1265)
T ss_pred             cccccccccccceecccccceeeecchh-hhccccccccccccc--chhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence            1000 00011112222111 11111111 111111110000000  00111234567788889888774   23444567


Q ss_pred             EEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEe---cCCCeEEEEeCCCce---eeeccCCCCcce
Q 019384          215 EFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATG---GCDGFVNVWDGNNKK---RLYQYSKYPTSI  288 (342)
Q Consensus       215 ~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sg---s~Dg~I~iWd~~~~~---~~~~~~~~~~~V  288 (342)
                      ++||-...  .....     .     ...+-=.+++|=|.|..+++-   ..|+.|.++..+...   ....+..-..+|
T Consensus       225 rV~drEg~--Lns~s-----e-----~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~v  292 (1265)
T KOG1920|consen  225 RVYDREGA--LNSTS-----E-----PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEV  292 (1265)
T ss_pred             EEecccch--hhccc-----C-----cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccch
Confidence            88987521  10000     0     000112468899999888874   356689999865422   122233333459


Q ss_pred             EEEEECCCCCEEEEEE
Q 019384          289 AALSFSRDGRLLAVAS  304 (342)
Q Consensus       289 ~~v~~spdg~~las~s  304 (342)
                      ..++|+.++..||+--
T Consensus       293 e~L~Wns~sdiLAv~~  308 (1265)
T KOG1920|consen  293 EELAWNSNSDILAVVT  308 (1265)
T ss_pred             heeeecCCCCceeeee
Confidence            9999999999999843

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.71  E-value=0.02  Score=53.13  Aligned_cols=230  Identities=14%  Similarity=0.033  Sum_probs=118.7

Q ss_pred             CCCeEEEEeCCCcEEEEECCCceeeeeeecCC-----------ceEEEEEeCCCCeEEEecCCcEEEEEeccCceeeccc
Q 019384           30 HSDHLLVSSWDKSVRLYDASANVLRGEFMHGG-----------PVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGK   98 (342)
Q Consensus        30 ~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~-----------~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~   98 (342)
                      .+.++..++.+|.+.-+|..+++.+......+           .+.+-....++.++.++.++.+.-+|.++++..--..
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            35677888889999999998887554432211           1111111235567788888999899988877431111


Q ss_pred             CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCc----EEEEeccCCeEEEEEcCCeEEEEeCC
Q 019384           99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPER----VYSLSLVGNRLVVATAGRHVNVYDLR  174 (342)
Q Consensus        99 h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~----v~~~s~~~~~~~~~s~d~~v~iwd~~  174 (342)
                      -...+.+--.. .++.++.++.++.|..+|.+++...  ..... ..+..    ..+-...++.++.++.++.+..+|..
T Consensus       148 ~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~--W~~~~-~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~  223 (394)
T PRK11138        148 VAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVK--WTVNL-DVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME  223 (394)
T ss_pred             CCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEe--eeecC-CCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence            11222221111 2456777888899999998765431  11110 00000    00001123467778888888888888


Q ss_pred             CCCCccccccc-ccc-ee---eEEEEEee--CCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384          175 NMSQPEQRRES-SLK-YQ---TRCVRCYP--NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN  247 (342)
Q Consensus       175 ~~~~~~~~~~~-~~~-~~---~~~v~~~~--~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  247 (342)
                      +++..-+.... ... ..   ...+...|  .+..+++++.++.+  ..+|..+.+.  .|....      +     ...
T Consensus       224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l--~ald~~tG~~--~W~~~~------~-----~~~  288 (394)
T PRK11138        224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNL--VALDLRSGQI--VWKREY------G-----SVN  288 (394)
T ss_pred             CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeE--EEEECCCCCE--EEeecC------C-----Ccc
Confidence            76542211100 000 00   00000111  23345555555543  4466643322  221110      0     011


Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEeCCCceeeec
Q 019384          248 AIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQ  280 (342)
Q Consensus       248 ~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~  280 (342)
                      .+..  .+..|..++.||.+...|.++++.+..
T Consensus       289 ~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~  319 (394)
T PRK11138        289 DFAV--DGGRIYLVDQNDRVYALDTRGGVELWS  319 (394)
T ss_pred             CcEE--ECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence            1111  356777788899999999998876654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.70  E-value=0.0016  Score=60.71  Aligned_cols=112  Identities=16%  Similarity=0.102  Sum_probs=72.4

Q ss_pred             CCceEEEEEe--CCCCeE----EEecCCcE----EEEEeccCcee----ecccCCcceeEEEEeCCCCEEEEeeCCCcEE
Q 019384           60 GGPVLDCCFH--DDSSGF----SASADHTV----RRLVFSHGKED----ILGKHDAPVRCIEYSYAAGQVITGSWDKSLK  125 (342)
Q Consensus        60 ~~~V~~~~~~--~~~~~~----s~s~D~~i----~~w~~~~~~~~----~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~  125 (342)
                      +....++.|+  .+.++.    +.+.++.+    .+|+....+..    +-......|.|++++|+.+.|+.|..||+|.
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii  284 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII  284 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence            4455778886  333443    34455542    45555544322    1234667899999999999999999999999


Q ss_pred             EEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCC
Q 019384          126 CWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRN  175 (342)
Q Consensus       126 iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~  175 (342)
                      +||...+...    .....-.....++.+++..+++|+.-|.+.+||+.-
T Consensus       285 LyD~~~~~t~----~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  285 LYDTTRGVTL----LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEEcCCCeee----eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            9997643221    111111222334444566888999999999999864

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.67  E-value=0.017  Score=55.86  Aligned_cols=112  Identities=12%  Similarity=0.083  Sum_probs=71.3

Q ss_pred             CCCCCCeEEEEEcCCC------------CeEEEEeCCCcEEEEECCCceeeeee-ecCCceEEEEEe---CCC--CeEEE
Q 019384           16 NPPSDGISNLRFSNHS------------DHLLVSSWDKSVRLYDASANVLRGEF-MHGGPVLDCCFH---DDS--SGFSA   77 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~------------~~l~s~s~Dgti~vwd~~~~~~~~~~-~h~~~V~~~~~~---~~~--~~~s~   77 (342)
                      +.|...|+.|+|.|..            -+||++.-.|.|.|||...+..+..+ .|.+++..++|.   ++.  .++.-
T Consensus        52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI  131 (1062)
T KOG1912|consen   52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAI  131 (1062)
T ss_pred             ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEe
Confidence            4677899999999742            13556666699999998776544444 467889999985   333  23455


Q ss_pred             ecCCcEEEEEeccCceee--cccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEc
Q 019384           78 SADHTVRRLVFSHGKEDI--LGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWD  128 (342)
Q Consensus        78 s~D~~i~~w~~~~~~~~~--~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd  128 (342)
                      ....++-+|+..+++..-  -..| ....|+.+.| |...|.--+..|.+-+-+
T Consensus       132 h~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~l~s~g~vl~~~  184 (1062)
T KOG1912|consen  132 HGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCVLGSKGFVLSCK  184 (1062)
T ss_pred             cCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCcceEEEEccCceEEEEe
Confidence            677789999888876321  1122 3445677777 334444444455554443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.66  E-value=0.019  Score=50.98  Aligned_cols=261  Identities=15%  Similarity=0.097  Sum_probs=135.8

Q ss_pred             CCCCccCCCCCCCCeEEEEEcCCCCeEEEEe----------CCCcEEEEECCCceeeeeeecCC--------ceEEEEEe
Q 019384            8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSS----------WDKSVRLYDASANVLRGEFMHGG--------PVLDCCFH   69 (342)
Q Consensus         8 ~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s----------~Dgti~vwd~~~~~~~~~~~h~~--------~V~~~~~~   69 (342)
                      +++++-|+.-..+-.-.+..||+++.+.++.          ..-.|.+||..+-....++.--.        ......++
T Consensus        24 ~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls  103 (342)
T PF06433_consen   24 ADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALS  103 (342)
T ss_dssp             TTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-
T ss_pred             CCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEc
Confidence            4566777776667677788999999887643          34578999998755444332111        11234555


Q ss_pred             CCCCeE---EEecCCcEEEEEeccCceeecccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-
Q 019384           70 DDSSGF---SASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP-  144 (342)
Q Consensus        70 ~~~~~~---s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-  144 (342)
                      .+++.+   -.+-...|.+.|+..++...... .  --|.-..| ....|.+-+.||++....+....+..+.....+. 
T Consensus       104 ~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~-~--PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~  180 (342)
T PF06433_consen  104 ADGKFLYVQNFTPATSVTVVDLAAKKVVGEID-T--PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDP  180 (342)
T ss_dssp             TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE-G--TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESST
T ss_pred             cCCcEEEEEccCCCCeEEEEECCCCceeeeec-C--CCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCC
Confidence            555432   34555566777776665321000 0  01222223 2356888888998877776543332211111111 


Q ss_pred             CCCcEE---EEeccCCeEEEEEcCCeEEEEeCCCCCCccccccccc----------ceeeEEEEEeeCCceEEEEc----
Q 019384          145 QPERVY---SLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSL----------KYQTRCVRCYPNGTGYALSS----  207 (342)
Q Consensus       145 ~~~~v~---~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~s----  207 (342)
                      ....++   ..+..++.++..+..|.|.-.|+..........-...          +.--.-+++++..+.+.+..    
T Consensus       181 ~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~  260 (342)
T PF06433_consen  181 DDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGG  260 (342)
T ss_dssp             TTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred             CCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCC
Confidence            111121   1233445677788888888888865432111000000          00001234454333333222    


Q ss_pred             ----cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEE-EecCCCeEEEEeCCCceeeecc
Q 019384          208 ----VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFA-TGGCDGFVNVWDGNNKKRLYQY  281 (342)
Q Consensus       208 ----~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~-sgs~Dg~I~iWd~~~~~~~~~~  281 (342)
                          .+..-.||.+|..+.+...++.+.            .++.+|+.+.+.+ .|. ....++.+.+||..+++.+.++
T Consensus       261 ~gsHKdpgteVWv~D~~t~krv~Ri~l~------------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  261 EGSHKDPGTEVWVYDLKTHKRVARIPLE------------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             TT-TTS-EEEEEEEETTTTEEEEEEEEE------------EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             CCCccCCceEEEEEECCCCeEEEEEeCC------------CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence                233446777887654444443332            2578899988765 554 4567899999999999988776


Q ss_pred             CC
Q 019384          282 SK  283 (342)
Q Consensus       282 ~~  283 (342)
                      .+
T Consensus       329 ~~  330 (342)
T PF06433_consen  329 EQ  330 (342)
T ss_dssp             --
T ss_pred             hc
Confidence            54

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.64  E-value=9.1e-05  Score=71.66  Aligned_cols=197  Identities=15%  Similarity=0.240  Sum_probs=118.2

Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC-C-eEEEE
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG-R-HVNVY  171 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d-~-~v~iw  171 (342)
                      +.+..|+...+|++|+-+.+.|+.|+..|.|++++..++.-.  .....|....+.+.-+.++...++.++- . ..-+|
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e--~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME--ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc--ccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            356678889999999998899999999999999998765321  1122233332333334456655544433 3 46789


Q ss_pred             eCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEE
Q 019384          172 DLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF  251 (342)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  251 (342)
                      ++...-.+...+.     .-.++.|+..-+.-+++......  .+||+.+......|. ..      .....+.=+++.|
T Consensus      1173 ~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a--~~YDvqT~~~l~tyl-t~------~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDA--LLYDVQTCSPLQTYL-TD------TVTSSYSNNLAHF 1238 (1516)
T ss_pred             ccccccCcccccc-----ccceeehhhhHHHHHhcccccce--EEEecccCcHHHHhc-Cc------chhhhhhcccccc
Confidence            9876322221111     12456666654444555554443  469987654433321 11      0111223367889


Q ss_pred             cCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe-ccccCCC
Q 019384          252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS-YTFEEGD  312 (342)
Q Consensus       252 sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~-~~~~~~~  312 (342)
                      +|+...+.   +||  -+||++..+.++.|...... -.=.|.|.|.-++.-+. |++++=+
T Consensus      1239 sP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSEIwD~RTF~ 1294 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSEIWDMRTFK 1294 (1516)
T ss_pred             CCCcceEe---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeechhhhhHHHH
Confidence            99887665   344  37999988777776655422 23468999998877765 5555433

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.63  E-value=0.033  Score=47.90  Aligned_cols=178  Identities=15%  Similarity=0.151  Sum_probs=96.8

Q ss_pred             eEEEEEc-CCCCeEEEEeCCCcEEEEECCCceeeeeee------cCCceEEEEEeCCCCeEEEecC---------CcEEE
Q 019384           22 ISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFM------HGGPVLDCCFHDDSSGFSASAD---------HTVRR   85 (342)
Q Consensus        22 V~~l~fs-~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~------h~~~V~~~~~~~~~~~~s~s~D---------~~i~~   85 (342)
                      ...+++. ++ ..|+.+..++ +.++|..+++......      .....+++++.+++.++.+...         +.+..
T Consensus        42 ~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            6778888 56 4555555554 5556988876544332      2235678999888877654432         22444


Q ss_pred             EEeccCceeecccCCcceeEEEEeCCCCEEE-EeeCCCcEEEEcCCCCCC--cceeeeeecCCCC-cE--EEEeccCCeE
Q 019384           86 LVFSHGKEDILGKHDAPVRCIEYSYAAGQVI-TGSWDKSLKCWDPRGASG--QERTLVGTYPQPE-RV--YSLSLVGNRL  159 (342)
Q Consensus        86 w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-sgs~D~~I~iWd~~~~~~--~~~~~~~~~~~~~-~v--~~~s~~~~~~  159 (342)
                      ++.. ++...+...-...+.++|+|+++.|+ +-+..+.|..+|+.....  .....+....... ..  ++++.+++..
T Consensus       120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~  198 (246)
T PF08450_consen  120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLW  198 (246)
T ss_dssp             EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EE
T ss_pred             ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEE
Confidence            4444 33333333345578999999998765 667788899888754332  1112222222221 23  3344456666


Q ss_pred             EEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEE-eeCCceEEE
Q 019384          160 VVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRC-YPNGTGYAL  205 (342)
Q Consensus       160 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~  205 (342)
                      ++....+.|.++|.. ++... ....+.. .+++++| -++.+.+.+
T Consensus       199 va~~~~~~I~~~~p~-G~~~~-~i~~p~~-~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  199 VADWGGGRIVVFDPD-GKLLR-EIELPVP-RPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             EEEETTTEEEEEETT-SCEEE-EEE-SSS-SEEEEEEESTTSSEEEE
T ss_pred             EEEcCCCEEEEECCC-ccEEE-EEcCCCC-CEEEEEEECCCCCEEEE
Confidence            666677899999987 43221 1112222 4566665 345444433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.57  E-value=0.0025  Score=62.31  Aligned_cols=180  Identities=14%  Similarity=0.147  Sum_probs=112.0

Q ss_pred             CCeEEEEeCCCcEEEEECCCceeeeeeecC-CceEEEEEeCCCCeEEEecCCcEEEEEeccCc-eeecccCCcceeEEEE
Q 019384           31 SDHLLVSSWDKSVRLYDASANVLRGEFMHG-GPVLDCCFHDDSSGFSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEY  108 (342)
Q Consensus        31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~-~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~  108 (342)
                      +..++-|+--..+..+|+.+.+......-+ +.|.=++. .+..+++|...|+|.+-|..+-+ ...+..|++.|..++.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~-Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv  225 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY-NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV  225 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe-cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence            445666777777888888776544433222 23433333 34455688889999999988766 4578899999977765


Q ss_pred             eCCCCEEEEeeCC---------CcEEEEcCCCCCCcceeeeeecCCCCcEEEEec-cCCeEEEEEcCCeEEEEeCCCCCC
Q 019384          109 SYAAGQVITGSWD---------KSLKCWDPRGASGQERTLVGTYPQPERVYSLSL-VGNRLVVATAGRHVNVYDLRNMSQ  178 (342)
Q Consensus       109 ~~~~~~l~sgs~D---------~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~-~~~~~~~~s~d~~v~iwd~~~~~~  178 (342)
                        .|+.|+||+..         ..|++||+|+-....  .+.....+ ....|-+ -...+++++..|...+-|..+...
T Consensus       226 --~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  226 --QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             --cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence              57888888754         578999998532211  11111111 1222222 235788899999999998332222


Q ss_pred             c-cccc-ccccceeeEEEEEeeCCceEEEEccCCeEEEEEee
Q 019384          179 P-EQRR-ESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFD  218 (342)
Q Consensus       179 ~-~~~~-~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d  218 (342)
                      + .... .......+..+.++++++.++.+..++.+.+  |.
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~--wa  340 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL--WA  340 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecccCcEee--ec
Confidence            2 1111 1122223567778999999999999998766  54

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.51  E-value=0.057  Score=47.36  Aligned_cols=55  Identities=22%  Similarity=0.259  Sum_probs=41.8

Q ss_pred             eeEEEEcCCCCeEEEecC-CCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEE
Q 019384          246 VNAIAFHPIYGTFATGGC-DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVA  303 (342)
Q Consensus       246 v~~v~~sp~~~~l~sgs~-Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~  303 (342)
                      +-+|++++++.+++..+- -+.+.+||..+++.+....  ...+..++-.+++ ++++.
T Consensus       219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ss  274 (305)
T PF07433_consen  219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSS  274 (305)
T ss_pred             eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeC
Confidence            678999999988866654 5689999999998876543  3467888888888 44443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.012  Score=52.48  Aligned_cols=76  Identities=12%  Similarity=0.058  Sum_probs=61.4

Q ss_pred             ecCCceEEEEEeCCCC--eEEEecCCcEEEEEeccCce-eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCC
Q 019384           58 MHGGPVLDCCFHDDSS--GFSASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGAS  133 (342)
Q Consensus        58 ~h~~~V~~~~~~~~~~--~~s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~  133 (342)
                      .|...|.+++|+|...  +..++.+.+|++.|+++... ..+..| .++++|+|..+. ..|+.|-..|.|.++|++..+
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            3566789999986544  56899999999999998764 344555 889999999866 578899999999999998765


Q ss_pred             C
Q 019384          134 G  134 (342)
Q Consensus       134 ~  134 (342)
                      +
T Consensus       270 ~  270 (463)
T KOG1645|consen  270 G  270 (463)
T ss_pred             c
Confidence            4

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.46  E-value=0.0057  Score=59.46  Aligned_cols=111  Identities=14%  Similarity=0.206  Sum_probs=77.5

Q ss_pred             CCCeEE-EEEcCCCCeEEEEeC----CCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EEecCCcEEEEEeccCc
Q 019384           19 SDGISN-LRFSNHSDHLLVSSW----DKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SASADHTVRRLVFSHGK   92 (342)
Q Consensus        19 ~~~V~~-l~fs~~~~~l~s~s~----Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s~D~~i~~w~~~~~~   92 (342)
                      +++|.. .+|.|...++|.++.    .|.|.||--. |+...-..-.=.+.++||+|...++ .+-.-|.+.+|...+.+
T Consensus        14 sdavsti~SWHPsePlfAVA~fS~er~GSVtIfadt-GEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e   92 (1416)
T KOG3617|consen   14 SDAVSTISSWHPSEPLFAVASFSPERGGSVTIFADT-GEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE   92 (1416)
T ss_pred             ccccccccccCCCCceeEEEEecCCCCceEEEEecC-CCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCce
Confidence            445544 678998899888764    3888888543 3322211111123568998876654 55556778888776655


Q ss_pred             e-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCC
Q 019384           93 E-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR  130 (342)
Q Consensus        93 ~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~  130 (342)
                      . .+...|..+|.-+.|+++|+.++|+..=|.+.+|...
T Consensus        93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            3 3456799999999999999999999998999999654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.0023  Score=61.61  Aligned_cols=145  Identities=18%  Similarity=0.143  Sum_probs=99.1

Q ss_pred             CeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecccCC
Q 019384           21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHD  100 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~  100 (342)
                      .+++.+++  +..|+-|.-+|.|++++.+... ...+.|+..     -..+..+++||.||++.+-.+.+.+..+.....
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~  112 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK  112 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc-----ccCCceEEEecCCCcEEEeeccCCccceeEecC
Confidence            44444444  4678889999999999987653 444445443     113445679999999988888777765544556


Q ss_pred             cceeEEEEeCC-----CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCC
Q 019384          101 APVRCIEYSYA-----AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRN  175 (342)
Q Consensus       101 ~~V~~~~~~~~-----~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~  175 (342)
                      .++.+++++|+     .+++++|+.-| +-++..+--...  ..+..+...+.+.++++.++.|+-++.+| |++||...
T Consensus       113 rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk--~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~  188 (846)
T KOG2066|consen  113 RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK--DSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPT  188 (846)
T ss_pred             CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc--cceeeecCccceEEEEecCcEEEEecCCC-cEEEeccc
Confidence            78999999997     45799999888 777653311111  11122345667889999999877666554 99999876


Q ss_pred             CC
Q 019384          176 MS  177 (342)
Q Consensus       176 ~~  177 (342)
                      .+
T Consensus       189 ~~  190 (846)
T KOG2066|consen  189 RQ  190 (846)
T ss_pred             cc
Confidence            53

>smart00320 WD40 WD40 repeats

Probab=97.43  E-value=0.00027  Score=40.41  Aligned_cols=31  Identities=23%  Similarity=0.378  Sum_probs=28.6

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEE
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYD   47 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd   47 (342)
                      .|...|.+++|.+++..+++++.|+.+++||
T Consensus        10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            5677899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.37  E-value=0.00043  Score=39.50  Aligned_cols=33  Identities=30%  Similarity=0.530  Sum_probs=29.7

Q ss_pred             cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEc
Q 019384           96 LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD  128 (342)
Q Consensus        96 ~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd  128 (342)
                      +..|...|.++.|.+++..+++++.|+.+++||
T Consensus         8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            456788999999999889999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.36  E-value=7.4e-05  Score=69.82  Aligned_cols=168  Identities=15%  Similarity=0.249  Sum_probs=104.1

Q ss_pred             CCCCCccCCCCCCCCeEEEEEcC-CCCeEEEEe----CCCcEEEEECCCce--eee---ee-ecCCceEEEEEeCCCCe-
Q 019384            7 PPTSGRELGNPPSDGISNLRFSN-HSDHLLVSS----WDKSVRLYDASANV--LRG---EF-MHGGPVLDCCFHDDSSG-   74 (342)
Q Consensus         7 ~~~~~~~~~~~~~~~V~~l~fs~-~~~~l~s~s----~Dgti~vwd~~~~~--~~~---~~-~h~~~V~~~~~~~~~~~-   74 (342)
                      |-+.+.|..+++....++++|++ |.+.||.|-    .|..+.|||+.+..  ...   +. +-......+||..+..+ 
T Consensus        90 ~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klv  169 (783)
T KOG1008|consen   90 PHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLV  169 (783)
T ss_pred             cccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchh
Confidence            44556777788888899999998 667777663    45789999987641  110   11 12344567888754444 


Q ss_pred             EEEecCCcEEEEEeccCceeecccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEc-CCCCCCcceeeeeec-CCCCcEEE
Q 019384           75 FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWD-PRGASGQERTLVGTY-PQPERVYS  151 (342)
Q Consensus        75 ~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd-~~~~~~~~~~~~~~~-~~~~~v~~  151 (342)
                      ++|.....+.++|+++.....-.--+..|..+...| ..+++++-+ |+.|.+|| .++-+...+..+... ..+..+..
T Consensus       170 laGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~  248 (783)
T KOG1008|consen  170 LAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFA  248 (783)
T ss_pred             hcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceee
Confidence            577777789999887654333223344566677777 667777655 99999999 333222212212111 12234666


Q ss_pred             EeccCC---eEEEEEcC-CeEEEEeCCC
Q 019384          152 LSLVGN---RLVVATAG-RHVNVYDLRN  175 (342)
Q Consensus       152 ~s~~~~---~~~~~s~d-~~v~iwd~~~  175 (342)
                      +.+.+.   .+++.+.| ++|+++|+..
T Consensus       249 ~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  249 LAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             EEeccCCcchhhhhccCcceEEEecccc
Confidence            666542   45555555 6899999864

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.30  E-value=0.17  Score=48.30  Aligned_cols=49  Identities=20%  Similarity=0.563  Sum_probs=33.7

Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeccCCCCcce--EEEEECCCCC-EEEEE
Q 019384          254 IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSI--AALSFSRDGR-LLAVA  303 (342)
Q Consensus       254 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V--~~v~~spdg~-~las~  303 (342)
                      .+..|+.++.||.|+.+|.++++.+.+++- .+.+  .-+.|..+|+ |+++.
T Consensus       405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~-~~~~~a~P~~~~~~g~~yv~~~  456 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATTGKELWKFRT-PSGIQATPMTYEVNGKQYVGVM  456 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCCCceeeEEEC-CCCceEcCEEEEeCCEEEEEEE
Confidence            357788899999999999999998876542 2222  3344556777 44443

The alignment model contains an 8-bladed beta-propeller.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.26  E-value=0.00029  Score=66.00  Aligned_cols=199  Identities=14%  Similarity=0.147  Sum_probs=124.8

Q ss_pred             CCCeEEEEEcCCC--CeEEEEeCCCcEEEEECCCce---eeeeeecCCceEEEEEeC-CCCeEEEecC-----CcEEEEE
Q 019384           19 SDGISNLRFSNHS--DHLLVSSWDKSVRLYDASANV---LRGEFMHGGPVLDCCFHD-DSSGFSASAD-----HTVRRLV   87 (342)
Q Consensus        19 ~~~V~~l~fs~~~--~~l~s~s~Dgti~vwd~~~~~---~~~~~~h~~~V~~~~~~~-~~~~~s~s~D-----~~i~~w~   87 (342)
                      ...+.+++++-+.  ..++.|..+|.|-+-......   ...+..|....++++|.+ |...+.+|.|     ..+.+||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            4567777776544  468889999999988775321   222335667788999974 4455666644     4688999


Q ss_pred             eccCc----e-eecc-cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec-cCCeEE
Q 019384           88 FSHGK----E-DILG-KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL-VGNRLV  160 (342)
Q Consensus        88 ~~~~~----~-~~~~-~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~-~~~~~~  160 (342)
                      +.++-    + ..+. +-.....+++|-.+.+.+++|...+.++++|+|...... ..+.. +. ..-..+++ .+++++
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~svnT-k~-vqG~tVdp~~~nY~c  212 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVNT-KY-VQGITVDPFSPNYFC  212 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-hhhhh-hh-cccceecCCCCCcee
Confidence            98762    1 1222 233456688888888889999999999999998321111 11111 00 11123444 566665


Q ss_pred             EEEcCCeEEEEe-CCCCCCccccc---ccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechh
Q 019384          161 VATAGRHVNVYD-LRNMSQPEQRR---ESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSE  221 (342)
Q Consensus       161 ~~s~d~~v~iwd-~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~  221 (342)
                      + ..|+.|-+|| .++.+.+.+..   ......+...+++.|....+...-......|+.+|...
T Consensus       213 s-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  213 S-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             c-cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            4 4589999999 66655443222   12223357788999987776655555566778888753

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.16  E-value=0.0048  Score=59.38  Aligned_cols=100  Identities=20%  Similarity=0.197  Sum_probs=78.3

Q ss_pred             eEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCCeEEEecCC----------cEEEEEeccCceeecc----
Q 019384           33 HLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSGFSASADH----------TVRRLVFSHGKEDILG----   97 (342)
Q Consensus        33 ~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~~~s~s~D~----------~i~~w~~~~~~~~~~~----   97 (342)
                      ++|.|-..|||-|+|+.++.+.. +-.|...|.++.|....++++.+...          .+.+-|+.++..+.++    
T Consensus       439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~  518 (1062)
T KOG1912|consen  439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK  518 (1062)
T ss_pred             eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence            56788899999999998876543 44699999999998777777666442          3556677777644443    


Q ss_pred             cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCC
Q 019384           98 KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA  132 (342)
Q Consensus        98 ~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~  132 (342)
                      ....+|+.+..+.-+.+|+..-.|.-+.+||+++.
T Consensus       519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~  553 (1062)
T KOG1912|consen  519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL  553 (1062)
T ss_pred             CCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence            34578999999999999999999999999998653

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.15  E-value=0.034  Score=40.90  Aligned_cols=64  Identities=25%  Similarity=0.342  Sum_probs=43.3

Q ss_pred             eeEEEEeC---CC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec-cCCeEEEEEcCCeEEEEeC
Q 019384          103 VRCIEYSY---AA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL-VGNRLVVATAGRHVNVYDL  173 (342)
Q Consensus       103 V~~~~~~~---~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~-~~~~~~~~s~d~~v~iwd~  173 (342)
                      |+++++..   +| +.|+.||.|..||+|+-+.       .+.....+..+..+.. .+..++.+.+.|+|.+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence            45555443   33 5799999999999998431       2223333455666665 3568999999999988875

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.14  E-value=0.092  Score=46.10  Aligned_cols=52  Identities=23%  Similarity=0.238  Sum_probs=35.2

Q ss_pred             EEEEcCCCCeEEEEe-----CCCcEEEEECCC-ceeeeee-ecCCceEEEEEeCCCCeE
Q 019384           24 NLRFSNHSDHLLVSS-----WDKSVRLYDASA-NVLRGEF-MHGGPVLDCCFHDDSSGF   75 (342)
Q Consensus        24 ~l~fs~~~~~l~s~s-----~Dgti~vwd~~~-~~~~~~~-~h~~~V~~~~~~~~~~~~   75 (342)
                      .-.||+||++|.|.=     ..|.|-|||... -..+.++ .|.=....+.+.+++..+
T Consensus        55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tL  113 (305)
T PF07433_consen   55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETL  113 (305)
T ss_pred             CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEE
Confidence            468999999998854     349999999983 3344443 343344567777777433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.14  E-value=0.0011  Score=64.30  Aligned_cols=60  Identities=23%  Similarity=0.323  Sum_probs=51.8

Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                      +.+++|||..-.|+.|-.-|.+.+|...+.+.-.....|+.+|..+.|||||..|.++..
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~  121 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDN  121 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCC
Confidence            467999998778899999999999998876655555679999999999999999999865

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.13  E-value=0.039  Score=54.80  Aligned_cols=129  Identities=16%  Similarity=0.173  Sum_probs=79.2

Q ss_pred             ecCCcEEEEEeccCce-eecccCCc-ceeEEEEeC-----CCCEEEEeeCCCcEEEEcCCCCCCc-ceeeeeecCCCCcE
Q 019384           78 SADHTVRRLVFSHGKE-DILGKHDA-PVRCIEYSY-----AAGQVITGSWDKSLKCWDPRGASGQ-ERTLVGTYPQPERV  149 (342)
Q Consensus        78 s~D~~i~~w~~~~~~~-~~~~~h~~-~V~~~~~~~-----~~~~l~sgs~D~~I~iWd~~~~~~~-~~~~~~~~~~~~~v  149 (342)
                      .....+..+|++.++. ..+.-|.. +|..++-..     .....+.|-.+..+..||+|-.... .......+......
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            3456788889988874 33444443 365554321     1335677888999999999853221 11111222233334


Q ss_pred             EEEeccC-CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc
Q 019384          150 YSLSLVG-NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV  208 (342)
Q Consensus       150 ~~~s~~~-~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~  208 (342)
                      .+++..+ ..|++|+.+|.||+||- .+.. .....+.++.++..|.++.||++++..+.
T Consensus       581 s~~aTt~~G~iavgs~~G~IRLyd~-~g~~-AKT~lp~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  581 SCFATTEDGYIAVGSNKGDIRLYDR-LGKR-AKTALPGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             eEEEecCCceEEEEeCCCcEEeecc-cchh-hhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence            4555544 47999999999999994 3222 22223456678899999999998765554

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.13  E-value=0.005  Score=58.60  Aligned_cols=150  Identities=13%  Similarity=0.055  Sum_probs=98.2

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee--cCCceEEEEEeCCCCeE-EEecCCcEEEEEeccCc
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM--HGGPVLDCCFHDDSSGF-SASADHTVRRLVFSHGK   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~--h~~~V~~~~~~~~~~~~-s~s~D~~i~~w~~~~~~   92 (342)
                      ..+...|.--+++..+.+|+-|+.-|.+.+|+-.++..+....  -.+.+..++.++...++ .|+..+.|.++-+....
T Consensus        30 ~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   30 GFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             ccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence            4667788888999999999999999999999987765443322  33445556667666665 55566667666554432


Q ss_pred             e--eec-----ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeee-eecCCCCcEEEEeccCCeEEEEEc
Q 019384           93 E--DIL-----GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLV-GTYPQPERVYSLSLVGNRLVVATA  164 (342)
Q Consensus        93 ~--~~~-----~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~-~~~~~~~~v~~~s~~~~~~~~~s~  164 (342)
                      .  ..+     ..|...|++++|++++.+|++|..-|+|-+-.+.+. ....... .-......|+.++.....+++++.
T Consensus       110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl  188 (726)
T KOG3621|consen  110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAFLSKSQEILSEDSEIVQLDYLQSYLLVSTL  188 (726)
T ss_pred             CCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechh-hhhccccceeeccCcceEEeecccceehHhhh
Confidence            1  111     237889999999999999999999999987766541 1100000 011123456777776555555554


Q ss_pred             CC
Q 019384          165 GR  166 (342)
Q Consensus       165 d~  166 (342)
                      -+
T Consensus       189 ~r  190 (726)
T KOG3621|consen  189 TR  190 (726)
T ss_pred             hh
Confidence            43

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.05  E-value=0.0051  Score=58.56  Aligned_cols=148  Identities=14%  Similarity=0.146  Sum_probs=93.9

Q ss_pred             cEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccc
Q 019384          148 RVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK  227 (342)
Q Consensus       148 ~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~  227 (342)
                      ...+++...+.++.|+.-|.+.+|+-..+.......+. ....+.....+++...++.++..+.|.+...+.+ ......
T Consensus        37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~-~p~~~~  114 (726)
T KOG3621|consen   37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE-LPRDLD  114 (726)
T ss_pred             EEEEeecCCceEEEecccceEEEEecCchhhhcccccC-ccceEEEEEecchhHhhhhhcCCceEEeehhhcc-CCCcce
Confidence            34567777889999999999999987665433322221 1123344456788888889999988766333321 111222


Q ss_pred             ceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCc----eeeeccCCCCcceEEEEECCCCCEEEEE
Q 019384          228 YAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNK----KRLYQYSKYPTSIAALSFSRDGRLLAVA  303 (342)
Q Consensus       228 ~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~----~~~~~~~~~~~~V~~v~~spdg~~las~  303 (342)
                      +.-.+|..      |...|+|++|++++..|.+|..-|.|.+-.+...    ...+.+....+.|-.+.+ -++.+|++.
T Consensus       115 ~~t~~d~~------~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~-~q~~LLVSt  187 (726)
T KOG3621|consen  115 YVTPCDKS------HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDY-LQSYLLVST  187 (726)
T ss_pred             eecccccc------CCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeec-ccceehHhh
Confidence            22223221      2236999999999999999999999999877661    112333445567777777 455555554


Q ss_pred             E
Q 019384          304 S  304 (342)
Q Consensus       304 s  304 (342)
                      .
T Consensus       188 l  188 (726)
T KOG3621|consen  188 L  188 (726)
T ss_pred             h
Confidence            4

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.02  E-value=0.037  Score=53.14  Aligned_cols=139  Identities=17%  Similarity=0.159  Sum_probs=80.4

Q ss_pred             cCCeEEEEEcCCeEEEEeCCC----CCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcc---
Q 019384          155 VGNRLVVATAGRHVNVYDLRN----MSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAK---  226 (342)
Q Consensus       155 ~~~~~~~~s~d~~v~iwd~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~---  226 (342)
                      +++....  .+++|.++|.++    ...  .....+.+...-.+.++|||+++++++. +.++  .++|+.......   
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~--v~~yIPVGKsPHGV~vSPDGkylyVanklS~tV--SVIDv~k~k~~~~~~  360 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSA--LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTV--TVIDVRKLDDLFDGK  360 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcc--eEEEEECCCCccceEECCCCCEEEEeCCCCCcE--EEEEChhhhhhhhcc
Confidence            4554443  367899999987    211  1111233344567889999998877764 5555  458875432110   


Q ss_pred             ---cceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC----------ceeeeccC-----CCCcce
Q 019384          227 ---KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN----------KKRLYQYS-----KYPTSI  288 (342)
Q Consensus       227 ---~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~----------~~~~~~~~-----~~~~~V  288 (342)
                         +-.+.+..+.  +.   +| .-.+|.++|..+.|--.|..|-.|++..          ...+..+.     +|....
T Consensus       361 ~~~~~~vvaevev--Gl---GP-LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~  434 (635)
T PRK02888        361 IKPRDAVVAEPEL--GL---GP-LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHAS  434 (635)
T ss_pred             CCccceEEEeecc--CC---Cc-ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeec
Confidence               0111111111  11   12 2358999998888888999999999875          22233332     343322


Q ss_pred             EEEEECCCCCEEEEEEe
Q 019384          289 AALSFSRDGRLLAVASS  305 (342)
Q Consensus       289 ~~v~~spdg~~las~s~  305 (342)
                      ..=.-.|||+||++...
T Consensus       435 ~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        435 MGETKEADGKWLVSLNK  451 (635)
T ss_pred             CCCcCCCCCCEEEEccc
Confidence            33344799999998774

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.84  E-value=0.02  Score=53.35  Aligned_cols=123  Identities=16%  Similarity=0.167  Sum_probs=74.2

Q ss_pred             eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384          167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP  245 (342)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~  245 (342)
                      .+.++|+.++......   ........-+|+|+|+.++.. ..++...|+++|+......+.....+             
T Consensus       219 ~i~~~~l~~g~~~~i~---~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~g-------------  282 (425)
T COG0823         219 RIYYLDLNTGKRPVIL---NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFG-------------  282 (425)
T ss_pred             eEEEEeccCCccceee---ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCc-------------
Confidence            5888899876543221   122223345689999887655 56788889999986554222111111             


Q ss_pred             ee-EEEEcCCCCeEEEecC-CC--eEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          246 VN-AIAFHPIYGTFATGGC-DG--FVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       246 v~-~v~~sp~~~~l~sgs~-Dg--~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      ++ .=.|+|||+.++-.+. .|  .|.+.+.+.... +.++.....-..-.|||||++|+..+..
T Consensus       283 i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~  346 (425)
T COG0823         283 INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSS  346 (425)
T ss_pred             cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEecc
Confidence            11 1258999998765543 44  466667765443 2222222222388899999999988843

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.73  E-value=0.075  Score=49.54  Aligned_cols=194  Identities=12%  Similarity=0.132  Sum_probs=110.2

Q ss_pred             ecccCCcceeEEEEeCCCCEEEEe-eCC---CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc-CC--e
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITG-SWD---KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA-GR--H  167 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sg-s~D---~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~-d~--~  167 (342)
                      .+..-...+..-+|+|+++.++-. -..   ..|.++|++++...   .+...........+++++..++.++. |+  .
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~---~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~  263 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP---VILNFNGNNGAPAFSPDGSKLAFSSSRDGSPD  263 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc---eeeccCCccCCccCCCCCCEEEEEECCCCCcc
Confidence            333334556667888888765432 122   34888898765432   22333444455678888887765544 34  4


Q ss_pred             EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384          168 VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV  246 (342)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v  246 (342)
                      |-+.|+.......  .... ......=+++|+|+.++..+ ..+.-.|++++...... .+.....-           .=
T Consensus       264 iy~~dl~~~~~~~--Lt~~-~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~-----------~~  328 (425)
T COG0823         264 IYLMDLDGKNLPR--LTNG-FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGG-----------GN  328 (425)
T ss_pred             EEEEcCCCCccee--cccC-CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCC-----------CC
Confidence            7777887654222  1111 11112345889999876654 55666777777654322 22211110           01


Q ss_pred             eEEEEcCCCCeEEEecC-CCe--EEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          247 NAIAFHPIYGTFATGGC-DGF--VNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       247 ~~v~~sp~~~~l~sgs~-Dg~--I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      ..-.++|||.+++..+. +|.  |.+.|..++..++.+. .......-+|+|+|+.|.-.+...
T Consensus       329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence            13468999998877654 344  6666666554333332 333456778899999887666544

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.71  E-value=0.45  Score=44.02  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=73.8

Q ss_pred             CeEEEEEcCCCCeEEEEeCCCcEEEEECCCce----------e---------------e-------------e------e
Q 019384           21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANV----------L---------------R-------------G------E   56 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~----------~---------------~-------------~------~   56 (342)
                      .|++++|.++..-|+.|-..|.|-||.....+          +               +             .      .
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58999999999999999999999999852110          0               0             0      0


Q ss_pred             eecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCcee---eccc------CCcceeEEEEeC-----CC---CEEEEee
Q 019384           57 FMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKED---ILGK------HDAPVRCIEYSY-----AA---GQVITGS  119 (342)
Q Consensus        57 ~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~---~~~~------h~~~V~~~~~~~-----~~---~~l~sgs  119 (342)
                      ....++|++++.++-+-++.|..+|.+.+.|++.....   .+..      ....|+++.|..     |+   -.++.|.
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            01357899999988777788889999999999766532   1222      335688888873     22   2568889


Q ss_pred             CCCcEEEEcCC
Q 019384          120 WDKSLKCWDPR  130 (342)
Q Consensus       120 ~D~~I~iWd~~  130 (342)
                      ..|.+.+|.+-
T Consensus       163 n~G~v~~fkIl  173 (395)
T PF08596_consen  163 NSGNVLTFKIL  173 (395)
T ss_dssp             TTSEEEEEEEE
T ss_pred             CCCCEEEEEEe
Confidence            99999999764

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=0.039  Score=51.19  Aligned_cols=142  Identities=13%  Similarity=0.142  Sum_probs=89.9

Q ss_pred             CCCeEE-EEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCC--------CeEEEecCCcEEEEEeccCceee---cc
Q 019384           30 HSDHLL-VSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDS--------SGFSASADHTVRRLVFSHGKEDI---LG   97 (342)
Q Consensus        30 ~~~~l~-s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~--------~~~s~s~D~~i~~w~~~~~~~~~---~~   97 (342)
                      +.+.|+ ++..-..+.=-|+..|+++.+......|.-+.+.|+.        +.+.|-.|..+..||.+-.....   ..
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q  423 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ  423 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence            334443 4444455666677888888877656667777776543        33667788899999986543211   12


Q ss_pred             cCC----cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeC
Q 019384           98 KHD----APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDL  173 (342)
Q Consensus        98 ~h~----~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~  173 (342)
                      +|.    ....|.+-.-+ .+|+.||.+|.||+||. .+. ...+.+.....+...+.++.+|+.|+ |+.+..+.+.|.
T Consensus       424 ~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~-~AKTAlPgLG~~I~hVdvtadGKwil-~Tc~tyLlLi~t  499 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGR-RAKTALPGLGDAIKHVDVTADGKWIL-ATCKTYLLLIDT  499 (644)
T ss_pred             ccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhh-hhhhcccccCCceeeEEeeccCcEEE-EecccEEEEEEE
Confidence            232    34566766644 58999999999999995 211 11223344444555667777887654 777778888886


Q ss_pred             CC
Q 019384          174 RN  175 (342)
Q Consensus       174 ~~  175 (342)
                      .-
T Consensus       500 ~~  501 (644)
T KOG2395|consen  500 LI  501 (644)
T ss_pred             ec
Confidence            53

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.67  E-value=0.061  Score=53.46  Aligned_cols=133  Identities=14%  Similarity=0.160  Sum_probs=84.0

Q ss_pred             eCCCcEEEEECCCceeeeeeecCC--ceEEEEEe------CCCCeEEEecCCcEEEEEeccCceeec------ccCCcce
Q 019384           38 SWDKSVRLYDASANVLRGEFMHGG--PVLDCCFH------DDSSGFSASADHTVRRLVFSHGKEDIL------GKHDAPV  103 (342)
Q Consensus        38 s~Dgti~vwd~~~~~~~~~~~h~~--~V~~~~~~------~~~~~~s~s~D~~i~~w~~~~~~~~~~------~~h~~~V  103 (342)
                      .....+.-.|+..|++..+..-..  +|..++-.      .+.+.+.|-.+..+..||.+-....+.      .......
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            455778888888888877764332  34544432      133568888899999999876431111      1234557


Q ss_pred             eEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCC
Q 019384          104 RCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLR  174 (342)
Q Consensus       104 ~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~  174 (342)
                      .|++-+.+| +||.||.+|.||+||.- + ....+.+.....+...+.++.+|..++ |+.+..+.|++..
T Consensus       581 s~~aTt~~G-~iavgs~~G~IRLyd~~-g-~~AKT~lp~lG~pI~~iDvt~DGkwil-aTc~tyLlLi~t~  647 (794)
T PF08553_consen  581 SCFATTEDG-YIAVGSNKGDIRLYDRL-G-KRAKTALPGLGDPIIGIDVTADGKWIL-ATCKTYLLLIDTL  647 (794)
T ss_pred             eEEEecCCc-eEEEEeCCCcEEeeccc-c-hhhhhcCCCCCCCeeEEEecCCCcEEE-EeecceEEEEEEe
Confidence            788877554 89999999999999942 2 112223333344444455566676544 6777788888863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.0097  Score=56.06  Aligned_cols=92  Identities=16%  Similarity=0.225  Sum_probs=64.9

Q ss_pred             eeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee-EEEEcCCCCeEEEecCCCeEE
Q 019384          190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN-AIAFHPIYGTFATGGCDGFVN  268 (342)
Q Consensus       190 ~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~-~v~~sp~~~~l~sgs~Dg~I~  268 (342)
                      .+..+.|.|.-..+|.+..+|.+.++-.+     ..+.|.+..|..         ++. +++|.|||+.||.|-.||+|+
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-----~qRlwtip~p~~---------~v~~sL~W~~DGkllaVg~kdG~I~   87 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-----WQRLWTIPIPGE---------NVTASLCWRPDGKLLAVGFKDGTIR   87 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-----cceeEeccCCCC---------ccceeeeecCCCCEEEEEecCCeEE
Confidence            35566788888888888888877653322     123344443322         344 899999999999999999999


Q ss_pred             EEeCCCceeeeccC-CCCcceEEEEECC
Q 019384          269 VWDGNNKKRLYQYS-KYPTSIAALSFSR  295 (342)
Q Consensus       269 iWd~~~~~~~~~~~-~~~~~V~~v~~sp  295 (342)
                      +-|++++..+..+. -....|.++-|+|
T Consensus        88 L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   88 LHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EEEccCCCceeccccccccchheeeccc
Confidence            99999988776632 1234677777763

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.55  E-value=0.67  Score=43.19  Aligned_cols=54  Identities=15%  Similarity=0.159  Sum_probs=36.5

Q ss_pred             eeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCC-CcceEEEEECCCCC
Q 019384          245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKY-PTSIAALSFSRDGR  298 (342)
Q Consensus       245 ~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-~~~V~~v~~spdg~  298 (342)
                      ++..++.||++++||.-..+|++.+.+.+-.+.+..+... ......|.|.-+..
T Consensus       218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence            6899999999999999999999999976544444333221 22344555544433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.54  E-value=0.36  Score=43.38  Aligned_cols=150  Identities=12%  Similarity=0.142  Sum_probs=91.0

Q ss_pred             CCeEEEEEcCC----CCeEEEEeC----------CCcEEEEECCCc-----e--eeeeeecCCceEEEEEeCCCCeEEEe
Q 019384           20 DGISNLRFSNH----SDHLLVSSW----------DKSVRLYDASAN-----V--LRGEFMHGGPVLDCCFHDDSSGFSAS   78 (342)
Q Consensus        20 ~~V~~l~fs~~----~~~l~s~s~----------Dgti~vwd~~~~-----~--~~~~~~h~~~V~~~~~~~~~~~~s~s   78 (342)
                      ..+..+.|..+    ..+|+.|..          .|.|.++++...     +  +.......++|++++-..+ . +.++
T Consensus        27 ~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~-~-lv~~  104 (321)
T PF03178_consen   27 TSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNG-R-LVVA  104 (321)
T ss_dssp             EEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETT-E-EEEE
T ss_pred             EEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCC-E-EEEe
Confidence            34455666654    456665532          299999999773     3  3344567899999987733 3 5555


Q ss_pred             cCCcEEEEEeccCc-eeecccC--CcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec-
Q 019384           79 ADHTVRRLVFSHGK-EDILGKH--DAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL-  154 (342)
Q Consensus        79 ~D~~i~~w~~~~~~-~~~~~~h--~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~-  154 (342)
                      ..+.+.+|++...+ ......+  ...+.++...  +++|+.|..-+.+.++..+. .......+.....+..+.++.+ 
T Consensus       105 ~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~-~~~~l~~va~d~~~~~v~~~~~l  181 (321)
T PF03178_consen  105 VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDE-ENNKLILVARDYQPRWVTAAEFL  181 (321)
T ss_dssp             ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEET-TTE-EEEEEEESS-BEEEEEEEE
T ss_pred             ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEc-cCCEEEEEEecCCCccEEEEEEe
Confidence            56899999998877 3322222  2356666655  56899998888887763322 1111222333233444555444 


Q ss_pred             -cCCeEEEEEcCCeEEEEeCC
Q 019384          155 -VGNRLVVATAGRHVNVYDLR  174 (342)
Q Consensus       155 -~~~~~~~~s~d~~v~iwd~~  174 (342)
                       +++.++.+..+|.+.++...
T Consensus       182 ~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  182 VDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             -SSSEEEEEETTSEEEEEEE-
T ss_pred             cCCcEEEEEcCCCeEEEEEEC
Confidence             44688888888999988775

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.52  E-value=0.0074  Score=37.13  Aligned_cols=32  Identities=31%  Similarity=0.388  Sum_probs=28.5

Q ss_pred             eeeEEEEcCCCCeEEEecCCCeEEEEeCCCcee
Q 019384          245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKR  277 (342)
Q Consensus       245 ~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~  277 (342)
                      .|.+++|+|....||.|..||.|.|+.+ +++.
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            5889999999999999999999999988 4443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.46  E-value=0.49  Score=40.67  Aligned_cols=200  Identities=9%  Similarity=0.052  Sum_probs=91.1

Q ss_pred             cccCCcceeEEEEeCCCCEEEE-eeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC-CeEEEEEc-CCeEEEEe
Q 019384           96 LGKHDAPVRCIEYSYAAGQVIT-GSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG-NRLVVATA-GRHVNVYD  172 (342)
Q Consensus        96 ~~~h~~~V~~~~~~~~~~~l~s-gs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~-~~~~~~s~-d~~v~iwd  172 (342)
                      +.+-...+..++|+|+.+.|++ ....+.|...+++ +.......+..   ....-.+...+ +.++.... ++++.+++
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g---~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG---FGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS----SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC---CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            3444456899999998765544 5555677666754 22211111221   22233444433 45555443 57788887


Q ss_pred             CCCCCCcc-----cccccc----cceeeEEEEEeeCCceEEEEccCCeEEEEEeechhh-hhcccceeeeEEecCCCCce
Q 019384          173 LRNMSQPE-----QRRESS----LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEA-SQAKKYAFKCHRKSEAGRDI  242 (342)
Q Consensus       173 ~~~~~~~~-----~~~~~~----~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~-~~~~~~~~~~h~~~~~~~~~  242 (342)
                      +.......     +.....    .+.-...+++.+.++.++++-...-..++-++.-.. ..........+..   ....
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~  169 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD---DKLF  169 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH----HT--
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc---ccce
Confidence            74321110     111111    112257889999877777665444444433332000 0000000000110   0011


Q ss_pred             eeeeeEEEEcCCC-CeEEEecCCCeEEEEeCCCceeee--ccCC-------CCcceEEEEECCCCCEEEEE
Q 019384          243 VYPVNAIAFHPIY-GTFATGGCDGFVNVWDGNNKKRLY--QYSK-------YPTSIAALSFSRDGRLLAVA  303 (342)
Q Consensus       243 ~~~v~~v~~sp~~-~~l~sgs~Dg~I~iWd~~~~~~~~--~~~~-------~~~~V~~v~~spdg~~las~  303 (342)
                      +..+++++|+|.. .+++....+..|..+|.+ ++.+.  .+..       .-..--.|+|.+||++.+++
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            2247889999975 567788889999999954 44433  2222       11356899999999987765

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.38  E-value=0.014  Score=35.94  Aligned_cols=33  Identities=15%  Similarity=0.224  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN   51 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~   51 (342)
                      .+.|..++|+|..++||.+..||.|.|++++..
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence            456999999999999999999999999999543

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.10  E-value=1.3  Score=42.98  Aligned_cols=75  Identities=11%  Similarity=0.081  Sum_probs=47.9

Q ss_pred             cceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCCC------cce-eeeeecCC--CCcEEEEeccCCeEEEEEcCCeEEE
Q 019384          101 APVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGASG------QER-TLVGTYPQ--PERVYSLSLVGNRLVVATAGRHVNV  170 (342)
Q Consensus       101 ~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~~------~~~-~~~~~~~~--~~~v~~~s~~~~~~~~~s~d~~v~i  170 (342)
                      .....++++|||+++ +++..+.++.+.|+++...      ..+ ......+.  ......|+-.++...+...|..|..
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~k  400 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVK  400 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEE
Confidence            445679999999987 5667789999999875221      000 11111111  1123455555666777888999999


Q ss_pred             EeCCC
Q 019384          171 YDLRN  175 (342)
Q Consensus       171 wd~~~  175 (342)
                      ||+..
T Consensus       401 wn~~~  405 (635)
T PRK02888        401 WNIEA  405 (635)
T ss_pred             EehHH
Confidence            99865

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.10  E-value=0.38  Score=44.97  Aligned_cols=182  Identities=16%  Similarity=0.180  Sum_probs=99.9

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCc--------------eE------EEEEeCCCCe--EE
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGP--------------VL------DCCFHDDSSG--FS   76 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~--------------V~------~~~~~~~~~~--~s   76 (342)
                      .++|.++++..-++.+++.++.. +.|..-..   ++.+.|...              ..      .+....+..+  .+
T Consensus       276 ~~~i~sl~~~a~~NS~Lvv~~~n-s~V~Rn~~---iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnlil~~  351 (644)
T KOG2395|consen  276 EGGIGSLDEGALDNSFLVVGYGN-SYVTRNNR---IGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLILMD  351 (644)
T ss_pred             hcccchhhhcccCCceEEecccc-eEEEecce---eeeeccCCceEEEeccCcccCCCccccCcchhhhhccccceEeeC
Confidence            46788899987666666665443 66655322   122222111              11      1111122222  24


Q ss_pred             EecCCcEEEEEeccCcee-ecccCCcceeEEEEeCCCC-------EEEEeeCCCcEEEEcCCCCCCcceeeeee--cCCC
Q 019384           77 ASADHTVRRLVFSHGKED-ILGKHDAPVRCIEYSYAAG-------QVITGSWDKSLKCWDPRGASGQERTLVGT--YPQP  146 (342)
Q Consensus        77 ~s~D~~i~~w~~~~~~~~-~~~~h~~~V~~~~~~~~~~-------~l~sgs~D~~I~iWd~~~~~~~~~~~~~~--~~~~  146 (342)
                      +.....+..+|++.++.. ...-|.+ |.-+.+.|+.+       .-+.|-.|..|.-||+|-.........+.  +...
T Consensus       352 ~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k  430 (644)
T KOG2395|consen  352 GGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTK  430 (644)
T ss_pred             CCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccc
Confidence            555566778888887743 2333333 77777777543       23557788999999998432211111111  1111


Q ss_pred             CcEEEEecc-CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc
Q 019384          147 ERVYSLSLV-GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS  207 (342)
Q Consensus       147 ~~v~~~s~~-~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s  207 (342)
                      ...-++... ...|++|+.+|.||+||- .+.+. ....+.+...+..|....+|+.++..+
T Consensus       431 ~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~A-KTAlPgLG~~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  431 NNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRA-KTALPGLGDAIKHVDVTADGKWILATC  490 (644)
T ss_pred             cccceeeecCCceEEEeecCCcEEeehh-hhhhh-hhcccccCCceeeEEeeccCcEEEEec
Confidence            222233333 347999999999999996 22221 122345556677788888888765444

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.95  E-value=0.025  Score=46.87  Aligned_cols=100  Identities=20%  Similarity=0.261  Sum_probs=56.7

Q ss_pred             CCeEEEEeCCCcEEEEECCCc-eeeeeeecCCceEEEEEe--CCC-CeEEEecCCcEEEEEeccCc-eeecccCC-ccee
Q 019384           31 SDHLLVSSWDKSVRLYDASAN-VLRGEFMHGGPVLDCCFH--DDS-SGFSASADHTVRRLVFSHGK-EDILGKHD-APVR  104 (342)
Q Consensus        31 ~~~l~s~s~Dgti~vwd~~~~-~~~~~~~h~~~V~~~~~~--~~~-~~~s~s~D~~i~~w~~~~~~-~~~~~~h~-~~V~  104 (342)
                      +..|+.|..||.|.+|+.... .....+.-......+.++  .++ ...+++.|+.|+.|...-.+ .....+|+ ..+.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            356788999999999998631 111111111222334443  232 34688999999999876655 33455666 3444


Q ss_pred             EEEEeCCCCEEEEe--eCCCcEEEEcCC
Q 019384          105 CIEYSYAAGQVITG--SWDKSLKCWDPR  130 (342)
Q Consensus       105 ~~~~~~~~~~l~sg--s~D~~I~iWd~~  130 (342)
                      .+..+..+..|...  |.|..++.|+++
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchh
Confidence            44444444445444  555555555543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.94  E-value=0.046  Score=51.68  Aligned_cols=69  Identities=25%  Similarity=0.323  Sum_probs=57.6

Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceE-EEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEE
Q 019384          246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIA-ALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRS  324 (342)
Q Consensus       246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~-~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~  324 (342)
                      +--+.|+|.-..+|.+.++|.|-+.... .+++.++.-+...+. +++|.|||+.||+|-.++           .|.++.
T Consensus        23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG-----------~I~L~D   90 (665)
T KOG4640|consen   23 IKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDG-----------TIRLHD   90 (665)
T ss_pred             eEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCC-----------eEEEEE
Confidence            4557899998999999999999999877 677888877777777 999999999999997765           377776


Q ss_pred             cc
Q 019384          325 VN  326 (342)
Q Consensus       325 ~~  326 (342)
                      ++
T Consensus        91 ve   92 (665)
T KOG4640|consen   91 VE   92 (665)
T ss_pred             cc
Confidence            66

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.74  E-value=1.5  Score=39.88  Aligned_cols=88  Identities=14%  Similarity=0.146  Sum_probs=39.9

Q ss_pred             CeEEEEEcCCCCeEEEE-eCCCc--EEEEECCCceeeeeeecCC-ceEEEEEeCCCC-eEEEecCCcEEEEEeccCceee
Q 019384           21 GISNLRFSNHSDHLLVS-SWDKS--VRLYDASANVLRGEFMHGG-PVLDCCFHDDSS-GFSASADHTVRRLVFSHGKEDI   95 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~-s~Dgt--i~vwd~~~~~~~~~~~h~~-~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~   95 (342)
                      ..+.=+|.+||++|+-+ ..||.  +.+-|+.+++...+-...+ .......++++. ++-.-....++..++++.++..
T Consensus        37 YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~  116 (386)
T PF14583_consen   37 YFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV  116 (386)
T ss_dssp             -TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred             eecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence            44455788999776644 44654  5555677777655443332 233444555444 3445556678888888887543


Q ss_pred             -cccCCcceeEEEE
Q 019384           96 -LGKHDAPVRCIEY  108 (342)
Q Consensus        96 -~~~h~~~V~~~~~  108 (342)
                       +.-...-+-...|
T Consensus       117 vy~~p~~~~g~gt~  130 (386)
T PF14583_consen  117 VYEVPDDWKGYGTW  130 (386)
T ss_dssp             EEE--TTEEEEEEE
T ss_pred             EEECCcccccccce
Confidence             3333333433444

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.62  E-value=0.78  Score=43.09  Aligned_cols=156  Identities=17%  Similarity=0.113  Sum_probs=72.0

Q ss_pred             CCCCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee----------------eeecCCce-------
Q 019384            7 PPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG----------------EFMHGGPV-------   63 (342)
Q Consensus         7 ~~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~----------------~~~h~~~V-------   63 (342)
                      +|..-++++. .......++++|+|+.++. +.||.-.|+.....+-..                ...-...|       
T Consensus        21 ~~l~~k~lg~-~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~   98 (443)
T PF04053_consen   21 LPLSVKELGS-CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFK   98 (443)
T ss_dssp             B----EEEEE--SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTE
T ss_pred             eeEEeccCCC-CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCc
Confidence            3444455552 2334688999999988876 677788888743211000                00000000       


Q ss_pred             ----EEEE-------EeCCCCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCC
Q 019384           64 ----LDCC-------FHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA  132 (342)
Q Consensus        64 ----~~~~-------~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~  132 (342)
                          ..+.       ... +.++....++.|.+||+++++...-... .+|..+.|++++++++-.+.| +|.+++....
T Consensus        99 ~~~~k~i~~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v-~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~  175 (443)
T PF04053_consen   99 NEVVKSIKLPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDV-SAVKYVIWSDDGELVALVTKD-SIYILKYNLE  175 (443)
T ss_dssp             E-TT-----SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred             cccceEEcCCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEec-CCCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence                0001       011 5556555666899999998874322222 248999999999988777654 5666653211


Q ss_pred             -------CCc--ceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEE
Q 019384          133 -------SGQ--ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNV  170 (342)
Q Consensus       133 -------~~~--~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~i  170 (342)
                             .+.  ....+.  +...+|.+..|.++.++-.+.. +++.
T Consensus       176 ~~~~~~~~g~e~~f~~~~--E~~~~IkSg~W~~d~fiYtT~~-~lkY  219 (443)
T PF04053_consen  176 AVAAIPEEGVEDAFELIH--EISERIKSGCWVEDCFIYTTSN-HLKY  219 (443)
T ss_dssp             HHHHBTTTB-GGGEEEEE--EE-S--SEEEEETTEEEEE-TT-EEEE
T ss_pred             hcccccccCchhceEEEE--EecceeEEEEEEcCEEEEEcCC-eEEE
Confidence                   111  111121  1134555667777766666655 6665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.57  E-value=1.4  Score=38.32  Aligned_cols=144  Identities=13%  Similarity=0.122  Sum_probs=78.7

Q ss_pred             CCCCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCccee-e---------
Q 019384           70 DDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERT-L---------  139 (342)
Q Consensus        70 ~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~-~---------  139 (342)
                      .+..++.|+.+| +.+++...........+...|..+...++-+.++.-+ |+.+.++++..-...... .         
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence            345677887777 7777773322222222333499999998877766554 599999998643221100 0         


Q ss_pred             eeecCCCCcEEEEe----ccCCeEEEEEcCCeEEEEeCCCCCCc--ccccccccceeeEEEEEeeCCceEEEEccCCeEE
Q 019384          140 VGTYPQPERVYSLS----LVGNRLVVATAGRHVNVYDLRNMSQP--EQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA  213 (342)
Q Consensus       140 ~~~~~~~~~v~~~s----~~~~~~~~~s~d~~v~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~  213 (342)
                      .........+..++    ..+...+.+...++|.+|.+......  ....+..++..+..+.+.  ++.++++..++-  
T Consensus        84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f--  159 (275)
T PF00780_consen   84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKGF--  159 (275)
T ss_pred             cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCce--
Confidence            00111122333444    12345566677779999888663211  122233344456666666  456777765543  


Q ss_pred             EEEeech
Q 019384          214 MEFFDLS  220 (342)
Q Consensus       214 i~~~d~~  220 (342)
                       .+.|+.
T Consensus       160 -~~idl~  165 (275)
T PF00780_consen  160 -YLIDLN  165 (275)
T ss_pred             -EEEecC
Confidence             345654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.56  E-value=0.042  Score=45.61  Aligned_cols=96  Identities=14%  Similarity=0.088  Sum_probs=54.7

Q ss_pred             eEEEEeCCCcEEEEECCCce--eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc--eeecccCCccee-EEE
Q 019384           33 HLLVSSWDKSVRLYDASANV--LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK--EDILGKHDAPVR-CIE  107 (342)
Q Consensus        33 ~l~s~s~Dgti~vwd~~~~~--~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~--~~~~~~h~~~V~-~~~  107 (342)
                      .|...|.||+|+=+++...+  .+.+..|... ..+ .--+..++.++.++.+.+|.+..-.  ......-...|. .+.
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v-~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEG-QRV-VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcc-eee-cccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            34556778888877775432  2333333322 111 1134567889999999998876322  111111112222 233


Q ss_pred             EeCCCCEEEEeeCCCcEEEEcCC
Q 019384          108 YSYAAGQVITGSWDKSLKCWDPR  130 (342)
Q Consensus       108 ~~~~~~~l~sgs~D~~I~iWd~~  130 (342)
                      -..++.+..++++|+.||.|...
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~  132 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIK  132 (238)
T ss_pred             cccccceeEEeccCCceeeeccc
Confidence            33345577899999999999975

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.37  E-value=1.9  Score=38.43  Aligned_cols=108  Identities=16%  Similarity=0.123  Sum_probs=60.8

Q ss_pred             eeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhh-hcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCC-e
Q 019384          190 QTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEAS-QAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDG-F  266 (342)
Q Consensus       190 ~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~-~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg-~  266 (342)
                      ..+.++|+|+++.+..+.. .+.+  +-|+..... .........+.....+     ..-.++...+|.+.+++-.+| .
T Consensus       164 ~~NGla~SpDg~tly~aDT~~~~i--~r~~~d~~~g~~~~~~~~~~~~~~~G-----~PDG~~vDadG~lw~~a~~~g~~  236 (307)
T COG3386         164 IPNGLAFSPDGKTLYVADTPANRI--HRYDLDPATGPIGGRRGFVDFDEEPG-----LPDGMAVDADGNLWVAAVWGGGR  236 (307)
T ss_pred             ecCceEECCCCCEEEEEeCCCCeE--EEEecCcccCccCCcceEEEccCCCC-----CCCceEEeCCCCEEEecccCCce
Confidence            3578999999987766643 3444  334432100 0000000000000011     123455666676655555554 8


Q ss_pred             EEEEeCCCceeeeccCCCCcceEEEEE-CCCCCEEEEEEe
Q 019384          267 VNVWDGNNKKRLYQYSKYPTSIAALSF-SRDGRLLAVASS  305 (342)
Q Consensus       267 I~iWd~~~~~~~~~~~~~~~~V~~v~~-spdg~~las~s~  305 (342)
                      |.+|+.+ ++.+..+.-....+.+++| .|+.+.|-+.+.
T Consensus       237 v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         237 VVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             EEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            9999988 7777776655577899999 777776555554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.20  E-value=1.2  Score=41.97  Aligned_cols=133  Identities=17%  Similarity=0.145  Sum_probs=66.9

Q ss_pred             CCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccC------------ceeeccc
Q 019384           31 SDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHG------------KEDILGK   98 (342)
Q Consensus        31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~------------~~~~~~~   98 (342)
                      |.+|+..+.+ .|.+||+.++++...+... +|..+.|++++..+....+..+.++.....            ....+..
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E  194 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHE  194 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEE
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEE
Confidence            7777766555 8999999998887776655 389999999888877666778877776544            1122222


Q ss_pred             CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeC
Q 019384           99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDL  173 (342)
Q Consensus        99 h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~  173 (342)
                      -...|.+..|.-+ -.++|...  .|+.+-  .+..   ..+.+...+..+.......+.+.....++.+..+.+
T Consensus       195 ~~~~IkSg~W~~d-~fiYtT~~--~lkYl~--~Ge~---~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  195 ISERIKSGCWVED-CFIYTTSN--HLKYLV--NGET---GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYEL  261 (443)
T ss_dssp             E-S--SEEEEETT-EEEEE-TT--EEEEEE--TTEE---EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred             ecceeEEEEEEcC-EEEEEcCC--eEEEEE--cCCc---ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence            2467778888754 34455433  666642  1111   123333333334444433355665566666665554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.19  E-value=2.2  Score=38.07  Aligned_cols=153  Identities=16%  Similarity=0.143  Sum_probs=75.5

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee---ec---CCceEEEEEeCCCCeEEEecC-----C-----cE
Q 019384           20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF---MH---GGPVLDCCFHDDSSGFSASAD-----H-----TV   83 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~---~h---~~~V~~~~~~~~~~~~s~s~D-----~-----~i   83 (342)
                      +.+.++..-..+..|+++  +.-+.+++...+..+...   ..   ....+.+...+++.+..+...     .     .-
T Consensus        66 ~~~~~~~~~d~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G  143 (307)
T COG3386          66 GGFSSGALIDAGGRLIAC--EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG  143 (307)
T ss_pred             CCcccceeecCCCeEEEE--ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc
Confidence            334444433344455544  334666676544442221   11   123456666666776554443     1     11


Q ss_pred             EEEEec-cCc-eeecccCCcceeEEEEeCCCCEEEEe-eCCCcEEEEcCCCCCC---cceeeeeecCCCCc--EEEEecc
Q 019384           84 RRLVFS-HGK-EDILGKHDAPVRCIEYSYAAGQVITG-SWDKSLKCWDPRGASG---QERTLVGTYPQPER--VYSLSLV  155 (342)
Q Consensus        84 ~~w~~~-~~~-~~~~~~h~~~V~~~~~~~~~~~l~sg-s~D~~I~iWd~~~~~~---~~~~~~~~~~~~~~--v~~~s~~  155 (342)
                      .+|-++ .+. ...+..|-..-+.++|+||++.|+-. +..+.|..+++.....   .....+........  -.+++.+
T Consensus       144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad  223 (307)
T COG3386         144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD  223 (307)
T ss_pred             eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC
Confidence            344444 222 44555555666789999999877655 4447787777642111   11111111111111  2234444


Q ss_pred             CCeEEEEEcC-CeEEEEeCC
Q 019384          156 GNRLVVATAG-RHVNVYDLR  174 (342)
Q Consensus       156 ~~~~~~~s~d-~~v~iwd~~  174 (342)
                      ++..+++-.+ +.|..|+..
T Consensus       224 G~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         224 GNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             CCEEEecccCCceEEEECCC
Confidence            5544333333 388888876

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.10  E-value=0.9  Score=38.76  Aligned_cols=127  Identities=18%  Similarity=0.136  Sum_probs=73.3

Q ss_pred             CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEec
Q 019384          157 NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKS  236 (342)
Q Consensus       157 ~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~  236 (342)
                      ..++.++-.+.+.-.|..+++..-   +.-+..++.+-+.- -|+.++++...+.+  ++.+..+..+...+.....-+ 
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~W---e~ilg~RiE~sa~v-vgdfVV~GCy~g~l--Yfl~~~tGs~~w~f~~~~~vk-   96 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIW---EAILGVRIECSAIV-VGDFVVLGCYSGGL--YFLCVKTGSQIWNFVILETVK-   96 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEe---ehhhCceeeeeeEE-ECCEEEEEEccCcE--EEEEecchhheeeeeehhhhc-
Confidence            355666777777777776664321   22233445544433 34567888777754  566665554433332211110 


Q ss_pred             CCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECC-CCCEE
Q 019384          237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSR-DGRLL  300 (342)
Q Consensus       237 ~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~sp-dg~~l  300 (342)
                               + .....+++..+..|+.|++.+.-|..+..++.+.+--.+.-.+-+..| |+.+.
T Consensus        97 ---------~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly  151 (354)
T KOG4649|consen   97 ---------V-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLY  151 (354)
T ss_pred             ---------c-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEE
Confidence                     1 123467899999999999999999998888876542222223344455 55533

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.99  E-value=0.066  Score=53.75  Aligned_cols=63  Identities=22%  Similarity=0.296  Sum_probs=46.0

Q ss_pred             eeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcce---EEEEECCCCCEEEEEE
Q 019384          242 IVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSI---AALSFSRDGRLLAVAS  304 (342)
Q Consensus       242 ~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V---~~v~~spdg~~las~s  304 (342)
                      ..++|.+++|+.+|.+++.|-.+|.|.+||...++.++.+..|..++   .-+-+..++..+.++.
T Consensus       129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D  194 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSD  194 (1206)
T ss_pred             cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEcc
Confidence            34689999999999999999999999999999888777665544433   3333344445455443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.86  E-value=2.2  Score=36.49  Aligned_cols=101  Identities=15%  Similarity=0.098  Sum_probs=71.6

Q ss_pred             CCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce-eecccCCcceeE-EEE
Q 019384           31 SDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-DILGKHDAPVRC-IEY  108 (342)
Q Consensus        31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~-~~~  108 (342)
                      ..+++-||..+.++--|.+++++..+..-.+.|.+-+..-++.++.|+..+.+...+..++.. -.+.. -+.|.+ ...
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~-~~~vk~~a~~  101 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVI-LETVKVRAQC  101 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeee-hhhhccceEE
Confidence            467778999999999999998877765556666554443455678999999998888888752 12211 112221 223


Q ss_pred             eCCCCEEEEeeCCCcEEEEcCCCC
Q 019384          109 SYAAGQVITGSWDKSLKCWDPRGA  132 (342)
Q Consensus       109 ~~~~~~l~sgs~D~~I~iWd~~~~  132 (342)
                      .++++.|..|+.|++....|.++.
T Consensus       102 d~~~glIycgshd~~~yalD~~~~  125 (354)
T KOG4649|consen  102 DFDGGLIYCGSHDGNFYALDPKTY  125 (354)
T ss_pred             cCCCceEEEecCCCcEEEeccccc
Confidence            457889999999999999998753

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.77  E-value=3.5  Score=38.36  Aligned_cols=196  Identities=16%  Similarity=0.181  Sum_probs=98.2

Q ss_pred             eEEEEEcCCCCeEEEE-eCC----CcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEecCC-----------cEE
Q 019384           22 ISNLRFSNHSDHLLVS-SWD----KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADH-----------TVR   84 (342)
Q Consensus        22 V~~l~fs~~~~~l~s~-s~D----gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~-----------~i~   84 (342)
                      +...++||++++||-+ +..    -+++++|+.+++.............+.|.++++. +....+.           .+.
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            3367899999998733 333    5699999998876543212112223889877554 4443332           256


Q ss_pred             EEEeccCce---eecccCCcc--eeEEEEeCCCCEEEE-eeCC---CcEEEEcCCCC---CCcceeeeeecCCCCcEEEE
Q 019384           85 RLVFSHGKE---DILGKHDAP--VRCIEYSYAAGQVIT-GSWD---KSLKCWDPRGA---SGQERTLVGTYPQPERVYSL  152 (342)
Q Consensus        85 ~w~~~~~~~---~~~~~h~~~--V~~~~~~~~~~~l~s-gs~D---~~I~iWd~~~~---~~~~~~~~~~~~~~~~v~~~  152 (342)
                      +|.+.+...   .++......  ...+..++|++.|+. ....   ..+.+-|+...   .... ..+.. ........+
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~-~~l~~-~~~~~~~~v  283 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKP-KLLSP-REDGVEYYV  283 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SE-EEEEE-SSSS-EEEE
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCc-EEEeC-CCCceEEEE
Confidence            666666542   344443333  567888999988653 2222   34667777653   1111 22211 111222334


Q ss_pred             eccCCeEEEEEcC----CeEEEEeCCCCCCcccc-cccccc--eeeEEEEEeeCCceEEEEccCCeEEEEEeech
Q 019384          153 SLVGNRLVVATAG----RHVNVYDLRNMSQPEQR-RESSLK--YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLS  220 (342)
Q Consensus       153 s~~~~~~~~~s~d----~~v~iwd~~~~~~~~~~-~~~~~~--~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~  220 (342)
                      ...++.+...+.+    +.|...++.+....... ......  ..+..+... .+..++....++.-.|.+++..
T Consensus       284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEECCccEEEEEECC
Confidence            4446655554444    35666777665321111 111111  122222222 2233445567777788888885

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=94.69  E-value=3.1  Score=37.32  Aligned_cols=133  Identities=13%  Similarity=0.128  Sum_probs=77.2

Q ss_pred             CcEEEEEeccC-----ceeec--ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEe
Q 019384           81 HTVRRLVFSHG-----KEDIL--GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLS  153 (342)
Q Consensus        81 ~~i~~w~~~~~-----~~~~~--~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s  153 (342)
                      |.+.++.+...     +...+  ....++|++++-. ++ +|+.+ ..+.|.+|++.....  ............+.++.
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~--l~~~~~~~~~~~i~sl~  136 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKT--LLKKAFYDSPFYITSLS  136 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSS--EEEEEEE-BSSSEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCccc--chhhheecceEEEEEEe
Confidence            67888888774     22222  3456889998766 33 44443 347999999875431  12222333344677888


Q ss_pred             ccCCeEEEEEcCCeEEEEeCCCCCC-cccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEee
Q 019384          154 LVGNRLVVATAGRHVNVYDLRNMSQ-PEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFD  218 (342)
Q Consensus       154 ~~~~~~~~~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d  218 (342)
                      ..++.++++..-+.+.++.++.... .........+..+.++.+.+++..++++..++.+.+.-++
T Consensus       137 ~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  137 VFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             ccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            8888999998888888775443211 1111111123345666677566678888888887665554

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.64  E-value=0.12  Score=30.95  Aligned_cols=30  Identities=27%  Similarity=0.339  Sum_probs=25.1

Q ss_pred             eeeEEEEcCCCC---eEEEecCCCeEEEEeCCC
Q 019384          245 PVNAIAFHPIYG---TFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       245 ~v~~v~~sp~~~---~l~sgs~Dg~I~iWd~~~  274 (342)
                      +|.+|.|+|.+.   +|+-.-.-|.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            588999998644   788887888999999985

It contains a characteristic DLL sequence motif.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=94.53  E-value=2.8  Score=36.10  Aligned_cols=110  Identities=9%  Similarity=0.120  Sum_probs=64.6

Q ss_pred             CCeEEEEEcCCCCeEEE-EeCCCcEEEEECCCceeeeeee--cCCceEEEEEeCCCCeEEEec-CCcEEEEEeccCc---
Q 019384           20 DGISNLRFSNHSDHLLV-SSWDKSVRLYDASANVLRGEFM--HGGPVLDCCFHDDSSGFSASA-DHTVRRLVFSHGK---   92 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s-~s~Dgti~vwd~~~~~~~~~~~--h~~~V~~~~~~~~~~~~s~s~-D~~i~~w~~~~~~---   92 (342)
                      +.+..|+|+|+.+.|++ ....+.|.-.+.. ++++..+.  --+..-++++..++.++.... ++.+.+..+....   
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~  100 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL  100 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence            34999999998776654 4555776666654 44443332  235678889987776665553 6777777763321   


Q ss_pred             -e---e--ec---ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCC
Q 019384           93 -E---D--IL---GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR  130 (342)
Q Consensus        93 -~---~--~~---~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~  130 (342)
                       .   .  .+   ..+...+-.++|.+.++.|+.+-...-.+++.++
T Consensus       101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~  147 (248)
T PF06977_consen  101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVN  147 (248)
T ss_dssp             -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEc
Confidence             1   1  11   1355668999999988888777666666676554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.47  E-value=1.3  Score=43.25  Aligned_cols=106  Identities=13%  Similarity=0.158  Sum_probs=59.6

Q ss_pred             CeEEEEEcCCCCeEEEEeCC-CcEEEE-----------ECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEE---
Q 019384           21 GISNLRFSNHSDHLLVSSWD-KSVRLY-----------DASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRR---   85 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~D-gti~vw-----------d~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~---   85 (342)
                      ..+.-+|+|||+.|++.+.. ..+++.           ++..+....  ...+.|..+.|++|+..+....++.+.+   
T Consensus       398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~V  475 (591)
T PRK13616        398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVV  475 (591)
T ss_pred             CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEE
Confidence            46778999998888776533 223333           333333222  3456799999998887654444565544   


Q ss_pred             EEeccCceee-----c-ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcC
Q 019384           86 LVFSHGKEDI-----L-GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDP  129 (342)
Q Consensus        86 w~~~~~~~~~-----~-~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~  129 (342)
                      -....+...+     + .+-...+.+++|..++.+ +.+..+..-.+|-+
T Consensus       476 vr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v  524 (591)
T PRK13616        476 EQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYV  524 (591)
T ss_pred             EeCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEE
Confidence            2222232221     2 223344688999988774 44444444445543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.46  E-value=0.18  Score=51.11  Aligned_cols=133  Identities=17%  Similarity=0.146  Sum_probs=78.2

Q ss_pred             EEEEEeeCCceEEEEccCCeEEEEEeechhhhhcc---cceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeE
Q 019384          192 RCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAK---KYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFV  267 (342)
Q Consensus       192 ~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~---~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I  267 (342)
                      ..+.+.+|+...++....+...|..||+.+.....   ...+..|....   +...-..++.|.|.=. ..+.+..|+.|
T Consensus       104 ~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~---ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  104 VIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSF---EKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             eEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchh---ccccccccccccCCccchhhhhccccch
Confidence            33445566554444433334456789987543222   12233332211   1111245677887633 56788899999


Q ss_pred             EEEeCCCcee-eeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc--CCccccCCCCCCC
Q 019384          268 NVWDGNNKKR-LYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN--EIEVKPKPKAYPN  339 (342)
Q Consensus       268 ~iWd~~~~~~-~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  339 (342)
                      ++..+.-... +..+ ......++++|||.|+.++.|-..+           .+++|.-+  +-.+.|+|+-|+|
T Consensus       181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnG-----------t~vQy~P~leik~~ip~Pp~~e~  243 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNG-----------TEVQYEPSLEIKSEIPEPPVEEN  243 (1405)
T ss_pred             hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCC-----------eEEEeecccceeecccCCCcCCC
Confidence            9987653222 2222 3456789999999999999987766           56666432  3456677777763

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.81  E-value=7.3  Score=38.22  Aligned_cols=102  Identities=9%  Similarity=0.059  Sum_probs=56.0

Q ss_pred             CCeEEEEEcCCCCeEEEEe------CCCcEEEE--ECCCceeeeeeecCCceEEEEEeCCCC-eEEEecC----------
Q 019384           20 DGISNLRFSNHSDHLLVSS------WDKSVRLY--DASANVLRGEFMHGGPVLDCCFHDDSS-GFSASAD----------   80 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s------~Dgti~vw--d~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D----------   80 (342)
                      ..+.+.++||+|+.+|-.-      .|..-.||  +..... ... ........-.|++++. +.+.+..          
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~l-t~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQV-LEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eee-ecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            4678899999999887554      34444455  442222 211 1223366677877744 3333321          


Q ss_pred             C--cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEE
Q 019384           81 H--TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKC  126 (342)
Q Consensus        81 ~--~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~i  126 (342)
                      +  .+.+..++.+....  .....|..+.|+|||.+++--. ++.|.+
T Consensus       428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            1  12222332222111  3345799999999999886544 466555

>PHA02713 hypothetical protein; Provisional

Probab=93.63  E-value=7.6  Score=37.87  Aligned_cols=23  Identities=0%  Similarity=-0.065  Sum_probs=18.3

Q ss_pred             CCCeEEEecCCC--eEEEEeCCCce
Q 019384          254 IYGTFATGGCDG--FVNVWDGNNKK  276 (342)
Q Consensus       254 ~~~~l~sgs~Dg--~I~iWd~~~~~  276 (342)
                      ++..+++|+.|+  ++..||..+.+
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCEEEEEeeecceeehhhcCccccc
Confidence            578889999988  78888877643

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=93.54  E-value=6.1  Score=36.47  Aligned_cols=194  Identities=19%  Similarity=0.202  Sum_probs=110.6

Q ss_pred             EEEEEcCCCCe-EEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCC-CeEEEec---CCcEEEEEeccCceee-c
Q 019384           23 SNLRFSNHSDH-LLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDS-SGFSASA---DHTVRRLVFSHGKEDI-L   96 (342)
Q Consensus        23 ~~l~fs~~~~~-l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~-~~~s~s~---D~~i~~w~~~~~~~~~-~   96 (342)
                      ..++.++.+.. .++...+++|.+.|....+......-......+.+.+++ .++.+-.   ++++.+.|-.+..... .
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~  156 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI  156 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence            46788888874 455566799999997776665554444466788888666 4444333   5667666666555322 1


Q ss_pred             ccCCcceeEEEEeCCCCEEEE-eeCCCcEEEEcCCCCCCccee---eeeecCCCCcEEEEeccCCeEEEEEcC---CeEE
Q 019384           97 GKHDAPVRCIEYSYAAGQVIT-GSWDKSLKCWDPRGASGQERT---LVGTYPQPERVYSLSLVGNRLVVATAG---RHVN  169 (342)
Q Consensus        97 ~~h~~~V~~~~~~~~~~~l~s-gs~D~~I~iWd~~~~~~~~~~---~~~~~~~~~~v~~~s~~~~~~~~~s~d---~~v~  169 (342)
                      ..-..+ ..+++.|+++.++. -+.+++|.+.|..........   ....... .....++.++..+...-..   +.+.
T Consensus       157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~~~~~~~~v~  234 (381)
T COG3391         157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVANDGSGSNNVL  234 (381)
T ss_pred             ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCC-CceEEECCCCCEEEEEeccCCCceEE
Confidence            111123 78999999986654 457889999997643221000   0111111 1234566677654433333   4788


Q ss_pred             EEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC-CeEEEEEeechh
Q 019384          170 VYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE-GRVAMEFFDLSE  221 (342)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~-~~~~i~~~d~~~  221 (342)
                      ..|..+............. ....+...|++..+.+.... +.+  .+.|...
T Consensus       235 ~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V--~vid~~~  284 (381)
T COG3391         235 KIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTV--SVIDGAT  284 (381)
T ss_pred             EEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeE--EEEeCCC
Confidence            8888765332211111111 34456788998887766443 433  4455543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.48  E-value=2.4  Score=39.20  Aligned_cols=60  Identities=20%  Similarity=0.139  Sum_probs=32.8

Q ss_pred             eeEEEEcCCCCeE-EEecCCCeEEEEeCCCc---eeeeccC----------------CCCcceEEEEECCCCCEEEEEEe
Q 019384          246 VNAIAFHPIYGTF-ATGGCDGFVNVWDGNNK---KRLYQYS----------------KYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       246 v~~v~~sp~~~~l-~sgs~Dg~I~iWd~~~~---~~~~~~~----------------~~~~~V~~v~~spdg~~las~s~  305 (342)
                      |+.+..|.|.++| +++-.+|.||.||+.+.   +.+.+..                .-.+..+-|..|.||++|=...|
T Consensus       314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            6778999999987 66778999999998753   3332211                01123477899999998777666

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.29  E-value=5.4  Score=38.22  Aligned_cols=110  Identities=15%  Similarity=0.227  Sum_probs=67.0

Q ss_pred             CCeEEEEEcCC----CCeEEEEeCCCcEEEEECCC-----ceeee----eeecCCce--EEEEEeCCCCeEEEecCCcEE
Q 019384           20 DGISNLRFSNH----SDHLLVSSWDKSVRLYDASA-----NVLRG----EFMHGGPV--LDCCFHDDSSGFSASADHTVR   84 (342)
Q Consensus        20 ~~V~~l~fs~~----~~~l~s~s~Dgti~vwd~~~-----~~~~~----~~~h~~~V--~~~~~~~~~~~~s~s~D~~i~   84 (342)
                      +-|..++|.|-    ...|++....+.|.||.+.-     .++..    ++...-+|  .+|.|+|...+++.=....+.
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            57899999985    44677788889999999841     22221    11222233  468888877765443333332


Q ss_pred             -EEEeccCc--eeecccCCcceeEEEEeCCCCEEEEe-eCCCcEEEEcC
Q 019384           85 -RLVFSHGK--EDILGKHDAPVRCIEYSYAAGQVITG-SWDKSLKCWDP  129 (342)
Q Consensus        85 -~w~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~sg-s~D~~I~iWd~  129 (342)
                       +.++....  ...=..-.+-|.|.+|.+||++|+.+ +..=.-.+||-
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence             23333222  22222455779999999999887543 33335689984

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=93.23  E-value=7.2  Score=36.40  Aligned_cols=182  Identities=16%  Similarity=0.149  Sum_probs=93.4

Q ss_pred             EEEcCCCCeEEEEeCC-----------CcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce
Q 019384           25 LRFSNHSDHLLVSSWD-----------KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        25 l~fs~~~~~l~s~s~D-----------gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~   93 (342)
                      ++.+|.|.-+|....+           ..|+||+..+..+....--.+.|.++.|..+..++....||.++++++.....
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~  113 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQ  113 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCcee
Confidence            4556666666655444           25999998876554432223899999999888899999999999999853321


Q ss_pred             eecc-------cCCcceeEEEEeCCCCEEEEeeCCCcEEEE-cCCCCCCcce--eee---e---ecCCCCcEEEEeccCC
Q 019384           94 DILG-------KHDAPVRCIEYSYAAGQVITGSWDKSLKCW-DPRGASGQER--TLV---G---TYPQPERVYSLSLVGN  157 (342)
Q Consensus        94 ~~~~-------~h~~~V~~~~~~~~~~~l~sgs~D~~I~iW-d~~~~~~~~~--~~~---~---~~~~~~~v~~~s~~~~  157 (342)
                      ..+.       -....+....+...|-.++++  ++.|.+- +.........  ...   .   .......+..++.+..
T Consensus       114 fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~  191 (410)
T PF04841_consen  114 FSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV  191 (410)
T ss_pred             echhhhccccCcccccccccccCCCCEEEECC--CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc
Confidence            1110       011112222222233223333  3333222 2111000000  000   0   0000111222333444


Q ss_pred             eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEE
Q 019384          158 RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAM  214 (342)
Q Consensus       158 ~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i  214 (342)
                      ..+....++.+.+.+-.....      .....++..++++|+++.++.-..++.+.+
T Consensus       192 ~~i~~~~g~~i~~i~~~~~~~------i~~~~~i~~iavSpng~~iAl~t~~g~l~v  242 (410)
T PF04841_consen  192 VEILLANGETIYIIDENSFKQ------IDSDGPIIKIAVSPNGKFIALFTDSGNLWV  242 (410)
T ss_pred             eEEEEecCCEEEEEEcccccc------ccCCCCeEEEEECCCCCEEEEEECCCCEEE
Confidence            455556666677555432211      011235778889999999998888887644

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.18  E-value=8.3  Score=36.93  Aligned_cols=64  Identities=16%  Similarity=0.176  Sum_probs=41.4

Q ss_pred             CCeEEEEeCCCcEEEEECCCceeeeeeecCCc-------eE--EEEEeCCCCeEEEecCCcEEEEEeccCcee
Q 019384           31 SDHLLVSSWDKSVRLYDASANVLRGEFMHGGP-------VL--DCCFHDDSSGFSASADHTVRRLVFSHGKED   94 (342)
Q Consensus        31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~-------V~--~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~   94 (342)
                      +..+..++.|+.+.-.|..+++.+-.+.-...       +.  .+....+++++.++.++.+.-+|.++++..
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~  133 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQV  133 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEe
Confidence            35666788899999999988775443321111       11  112222267788888999999998888743

The alignment model contains an 8-bladed beta-propeller.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.11  E-value=9.3  Score=37.36  Aligned_cols=225  Identities=18%  Similarity=0.207  Sum_probs=108.0

Q ss_pred             cCCCCeEEEEeCC------CcEEEEECCCceeeee--eecCCceEEEEEeCCCCeEEEecC-C-----cEEEEEeccCce
Q 019384           28 SNHSDHLLVSSWD------KSVRLYDASANVLRGE--FMHGGPVLDCCFHDDSSGFSASAD-H-----TVRRLVFSHGKE   93 (342)
Q Consensus        28 s~~~~~l~s~s~D------gti~vwd~~~~~~~~~--~~h~~~V~~~~~~~~~~~~s~s~D-~-----~i~~w~~~~~~~   93 (342)
                      +..+.+++.||.+      .++..+|..++.....  ......-.++++..+...++||.| +     ++..||..+...
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence            3345667778777      4778888877643221  112223345555555444578878 3     355666666553


Q ss_pred             eecc---c--CCcceeEEEEeCCCCEEEEeeCCC-----cEEEEcCCCCCCcceeeeeecCCCCc-EEEEeccCCeEEEE
Q 019384           94 DILG---K--HDAPVRCIEYSYAAGQVITGSWDK-----SLKCWDPRGASGQERTLVGTYPQPER-VYSLSLVGNRLVVA  162 (342)
Q Consensus        94 ~~~~---~--h~~~V~~~~~~~~~~~l~sgs~D~-----~I~iWd~~~~~~~~~~~~~~~~~~~~-v~~~s~~~~~~~~~  162 (342)
                      ..+.   .  +.-.+..+    +|...+.|+.||     +|..||.++..=   ........... .......+...++|
T Consensus       362 ~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W---~~va~m~~~r~~~gv~~~~g~iYi~G  434 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKW---TPVAPMLTRRSGHGVAVLGGKLYIIG  434 (571)
T ss_pred             eccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcc---cccCCCCcceeeeEEEEECCEEEEEc
Confidence            3211   1  11222222    466678888886     577888764321   11111111111 12233455555666


Q ss_pred             EcCC------eEEEEeCCCCCCccccccccccee--eEEEEEeeCCceEEEEccCCe---EEEEEeechhhhhcccceee
Q 019384          163 TAGR------HVNVYDLRNMSQPEQRRESSLKYQ--TRCVRCYPNGTGYALSSVEGR---VAMEFFDLSEASQAKKYAFK  231 (342)
Q Consensus       163 s~d~------~v~iwd~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~s~~~~---~~i~~~d~~~~~~~~~~~~~  231 (342)
                      +.++      .+..||-.+..=..   ..+....  ...+ ..-++..+++|+.++.   -.+..||....+....-.+.
T Consensus       435 G~~~~~~~l~sve~YDP~t~~W~~---~~~M~~~R~~~g~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~  510 (571)
T KOG4441|consen  435 GGDGSSNCLNSVECYDPETNTWTL---IAPMNTRRSGFGV-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT  510 (571)
T ss_pred             CcCCCccccceEEEEcCCCCceee---cCCcccccccceE-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence            6453      47778876642110   0011100  0111 2335566677776652   22456776443221111111


Q ss_pred             eEEecCCCCceeeeeeEEEEc-CCCCeEEEecCCC-----eEEEEeCCCc
Q 019384          232 CHRKSEAGRDIVYPVNAIAFH-PIYGTFATGGCDG-----FVNVWDGNNK  275 (342)
Q Consensus       232 ~h~~~~~~~~~~~~v~~v~~s-p~~~~l~sgs~Dg-----~I~iWd~~~~  275 (342)
                      .            +...+... -++..++.|+.||     +|..||..+.
T Consensus       511 ~------------~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  511 S------------PRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             c------------ccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence            0            11111111 2466778888877     5777776543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=92.95  E-value=7.5  Score=35.86  Aligned_cols=264  Identities=11%  Similarity=0.057  Sum_probs=138.3

Q ss_pred             CeEEEEEcCCCCeE-EEEeCCCcEEEEECCCceeeeeeecC-CceEEEEEeCCCC-eE-EEecCCcEEEEEeccCceeec
Q 019384           21 GISNLRFSNHSDHL-LVSSWDKSVRLYDASANVLRGEFMHG-GPVLDCCFHDDSS-GF-SASADHTVRRLVFSHGKEDIL   96 (342)
Q Consensus        21 ~V~~l~fs~~~~~l-~s~s~Dgti~vwd~~~~~~~~~~~h~-~~V~~~~~~~~~~-~~-s~s~D~~i~~w~~~~~~~~~~   96 (342)
                      ....+...+++..+ ++-....++.+.+...........-. .....+++++.+. ++ ....++.+.+.|..+......
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            45567778887544 33333335555554421111111111 2224556655444 44 444467888888666553322


Q ss_pred             ccCCcceeEEEEeCCCCEEEEeeC---CCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEE-EcCCeEEEEe
Q 019384           97 GKHDAPVRCIEYSYAAGQVITGSW---DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVA-TAGRHVNVYD  172 (342)
Q Consensus        97 ~~h~~~V~~~~~~~~~~~l~sgs~---D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~-s~d~~v~iwd  172 (342)
                      ..-...-..++++++++.++.+..   ++++-+.|..+....  .....-..+ .-..++.+++.++.+ ..++++.++|
T Consensus       112 ~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~--~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~  188 (381)
T COG3391         112 IPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT--ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID  188 (381)
T ss_pred             eeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE--EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence            222225668999999987765444   678888886543321  111110112 334566677755544 4678999999


Q ss_pred             CCCCCCccccc---ccccceeeEEEEEeeCCceEEEEccCC-eEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384          173 LRNMSQPEQRR---ESSLKYQTRCVRCYPNGTGYALSSVEG-RVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA  248 (342)
Q Consensus       173 ~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~s~~~-~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  248 (342)
                      ........ ..   ..........+.+.|++..+.+..... +..+...|......... ....        ... ....
T Consensus       189 ~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~-~~~~--------~~~-~~~~  257 (381)
T COG3391         189 TSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT-DLPV--------GSG-APRG  257 (381)
T ss_pred             CCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe-cccc--------ccC-CCCc
Confidence            76542211 00   011112235577889988665554332 13344455543211100 0000        000 1335


Q ss_pred             EEEcCCCCeEEEe-cCCCeEEEEeCCCceeeeccCCC---CcceEEEEECCCCC
Q 019384          249 IAFHPIYGTFATG-GCDGFVNVWDGNNKKRLYQYSKY---PTSIAALSFSRDGR  298 (342)
Q Consensus       249 v~~sp~~~~l~sg-s~Dg~I~iWd~~~~~~~~~~~~~---~~~V~~v~~spdg~  298 (342)
                      ++++|+|..+.+. +..+++.+-|..+..........   ...+..+++.+...
T Consensus       258 v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  311 (381)
T COG3391         258 VAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYD  311 (381)
T ss_pred             eeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeecc
Confidence            7899999988776 44589999998876555433222   23456666666543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.87  E-value=1.2  Score=41.16  Aligned_cols=99  Identities=13%  Similarity=0.171  Sum_probs=66.1

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee--e---cCCceEEEEEeCCCCeEEEecCCcEEEEEec-
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF--M---HGGPVLDCCFHDDSSGFSASADHTVRRLVFS-   89 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~--~---h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~-   89 (342)
                      -...+.|.++.||+|.+.||.--.|++|.+++..........  .   .+..|.+.+|.+...++..+..| +.++-.. 
T Consensus        63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~p  141 (657)
T KOG2377|consen   63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLP  141 (657)
T ss_pred             ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEch
Confidence            344679999999999999999999999999997433211111  1   23458899998776555444433 3344332 


Q ss_pred             -cCceeecccCCcceeEEEEeCCCCEE
Q 019384           90 -HGKEDILGKHDAPVRCIEYSYAAGQV  115 (342)
Q Consensus        90 -~~~~~~~~~h~~~V~~~~~~~~~~~l  115 (342)
                       ....+....|.-.|+=-.|+++...+
T Consensus       142 ekrslRlVks~~~nvnWy~yc~et~v~  168 (657)
T KOG2377|consen  142 EKRSLRLVKSHNLNVNWYMYCPETAVI  168 (657)
T ss_pred             hhhhhhhhhhcccCccEEEEccccceE
Confidence             22234556677788888888877654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=92.82  E-value=8  Score=35.85  Aligned_cols=196  Identities=13%  Similarity=0.136  Sum_probs=94.7

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee---------cCCceEEEEEe-----CCC----CeEEEecC
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM---------HGGPVLDCCFH-----DDS----SGFSASAD   80 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~---------h~~~V~~~~~~-----~~~----~~~s~s~D   80 (342)
                      .+.|++++.|.- ..+|.|..||++.|.|+.+..++....         ....|+++.|.     .|+    .++.|...
T Consensus        86 ~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~  164 (395)
T PF08596_consen   86 QGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS  164 (395)
T ss_dssp             S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred             CCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence            689999998744 589999999999999998776544321         12357778775     233    24678888


Q ss_pred             CcEEEEEec--c-Cce-----eecccCCcceeEEE-EeCCC--------------------CEEEEeeCCCcEEEEcCCC
Q 019384           81 HTVRRLVFS--H-GKE-----DILGKHDAPVRCIE-YSYAA--------------------GQVITGSWDKSLKCWDPRG  131 (342)
Q Consensus        81 ~~i~~w~~~--~-~~~-----~~~~~h~~~V~~~~-~~~~~--------------------~~l~sgs~D~~I~iWd~~~  131 (342)
                      |.+..|.+-  . +..     .....+.++|..+. ++.+.                    ..++....+..||++.+-+
T Consensus       165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~  244 (395)
T PF08596_consen  165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK  244 (395)
T ss_dssp             SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred             CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence            988877653  1 111     11224556666655 32221                    1233344578899998754


Q ss_pred             CCCcceeeeeecCCCCcE--EEEe-----ccCCeEEEEEcCCeEEEEeCCCCCCccccccc-ccce-eeEEEEEeeCCce
Q 019384          132 ASGQERTLVGTYPQPERV--YSLS-----LVGNRLVVATAGRHVNVYDLRNMSQPEQRRES-SLKY-QTRCVRCYPNGTG  202 (342)
Q Consensus       132 ~~~~~~~~~~~~~~~~~v--~~~s-----~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~-~~~~-~~~~v~~~~~~~~  202 (342)
                      ... ..   ..+..+..+  ..+.     ..+..+++-..+|.++++-+-..+........ .... ......+.++|..
T Consensus       245 ~k~-~~---K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi  320 (395)
T PF08596_consen  245 SKG-AH---KSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDI  320 (395)
T ss_dssp             --E-EE---EE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-E
T ss_pred             Ccc-cc---eeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCE
Confidence            322 11   111111111  1121     12346777899999999998664322111100 0000 0112345777776


Q ss_pred             EEEEccCCeEEEEEeec
Q 019384          203 YALSSVEGRVAMEFFDL  219 (342)
Q Consensus       203 ~~~~s~~~~~~i~~~d~  219 (342)
                      ++..+...-..+.+|..
T Consensus       321 ~~~~gpsE~~l~sv~~~  337 (395)
T PF08596_consen  321 FYWTGPSEIQLFSVWGE  337 (395)
T ss_dssp             EEE-SSSEEEEEEEES-
T ss_pred             EEEeCcccEEEEEEEcc
Confidence            66665554444444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.23  E-value=0.73  Score=46.75  Aligned_cols=64  Identities=19%  Similarity=0.292  Sum_probs=47.1

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEe---CCCC-eEEEecCCc
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFH---DDSS-GFSASADHT   82 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~---~~~~-~~s~s~D~~   82 (342)
                      ...|++++|+.+|..++.|-.+|.|.+||...++.... ..|..++.++-+.   .++. ++++-.-|.
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence            56899999999999999999999999999998765544 3466666555543   3334 455555554

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.89  E-value=0.11  Score=51.31  Aligned_cols=117  Identities=15%  Similarity=0.158  Sum_probs=72.4

Q ss_pred             ccCCCCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECC--Cceeeeee-----e-cCCc---eEEEEEeCCCCeEE-Ee
Q 019384           12 RELGNPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDAS--ANVLRGEF-----M-HGGP---VLDCCFHDDSSGFS-AS   78 (342)
Q Consensus        12 ~~~~~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~--~~~~~~~~-----~-h~~~---V~~~~~~~~~~~~s-~s   78 (342)
                      ++|..+..++|-.|+|.. +..+++  -.=|..-|||++  .|++...+     . ....   |..|-|......+. +-
T Consensus       125 ~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~  202 (1283)
T KOG1916|consen  125 NELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGL  202 (1283)
T ss_pred             HHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeecc
Confidence            356677788999999875 333443  222788999975  34432221     1 1222   33333434443333 33


Q ss_pred             cCCcEEEEEeccCceeecccCCcceeEE-----------EEeCCCCEEEEeeCCCcEEEEcCC
Q 019384           79 ADHTVRRLVFSHGKEDILGKHDAPVRCI-----------EYSYAAGQVITGSWDKSLKCWDPR  130 (342)
Q Consensus        79 ~D~~i~~w~~~~~~~~~~~~h~~~V~~~-----------~~~~~~~~l~sgs~D~~I~iWd~~  130 (342)
                      .++++++..+.+....++.+|...+..+           ..+|||+.|+..+.||.++.|-+.
T Consensus       203 ~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  203 KGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             CCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            5668998888776666677787554432           257899999999999988888653

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=91.54  E-value=14  Score=35.78  Aligned_cols=52  Identities=17%  Similarity=0.375  Sum_probs=34.5

Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeccCCCCc-ceEEEEECCCCC-EEEEEEe
Q 019384          254 IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPT-SIAALSFSRDGR-LLAVASS  305 (342)
Q Consensus       254 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~-~V~~v~~spdg~-~las~s~  305 (342)
                      .+..++.+..||.++.+|.++++.+.++.-... .-.-+.|.-||+ |++..+.
T Consensus       471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv~~~~G  524 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVAVLSG  524 (527)
T ss_pred             CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEEEEEec
Confidence            355677788899999999999998876543221 113344556777 5554443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.78  E-value=20  Score=36.12  Aligned_cols=95  Identities=15%  Similarity=0.169  Sum_probs=57.2

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-eeeeeeec-CCceEEEEEeCCCCeEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-VLRGEFMH-GGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-~~~~~~~h-~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~   93 (342)
                      +...-.|..|.++++|.+||-.|..|.+.+ .+... ...+.+.. ...|.|=.+.=+..++                  
T Consensus        81 ~~~~f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~------------------  141 (717)
T PF10168_consen   81 NPPLFEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFF------------------  141 (717)
T ss_pred             CCCceeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhc------------------
Confidence            344568999999999999998888765444 33211 00111111 1223333332121111                  


Q ss_pred             eecccCCcceeEEEEeCC---CCEEEEeeCCCcEEEEcCCC
Q 019384           94 DILGKHDAPVRCIEYSYA---AGQVITGSWDKSLKCWDPRG  131 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~---~~~l~sgs~D~~I~iWd~~~  131 (342)
                        ...+...|..+.|+|.   +..|+.=..|++||+||+..
T Consensus       142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence              1233456889999985   46777778899999999864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=90.76  E-value=17  Score=35.26  Aligned_cols=106  Identities=21%  Similarity=0.224  Sum_probs=53.7

Q ss_pred             CCCeEEEecCCcEEEEEeccCceee---cccCC--cce-------eEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCccee
Q 019384           71 DSSGFSASADHTVRRLVFSHGKEDI---LGKHD--APV-------RCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERT  138 (342)
Q Consensus        71 ~~~~~s~s~D~~i~~w~~~~~~~~~---~~~h~--~~V-------~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~  138 (342)
                      ++.++.++.++.+.-+|..+++..-   .....  ..+       ..+++.  +..++.++.|+.+.-.|.++++..-..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            5566777777777777777766321   11100  011       112222  356777888999998898765432111


Q ss_pred             eeeecCCCCcEEE-EeccCCeEEEEEc------CCeEEEEeCCCCCC
Q 019384          139 LVGTYPQPERVYS-LSLVGNRLVVATA------GRHVNVYDLRNMSQ  178 (342)
Q Consensus       139 ~~~~~~~~~~v~~-~s~~~~~~~~~s~------d~~v~iwd~~~~~~  178 (342)
                      ..........+.+ -...++.+++++.      ++.|.-+|+++++.
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~  193 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL  193 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce
Confidence            1110000000100 0112345555543      56788888887754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.64  E-value=14  Score=34.28  Aligned_cols=112  Identities=16%  Similarity=0.151  Sum_probs=56.7

Q ss_pred             EEEEeCCCCeE--EEecCC----cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCC-----------cEEEE
Q 019384           65 DCCFHDDSSGF--SASADH----TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDK-----------SLKCW  127 (342)
Q Consensus        65 ~~~~~~~~~~~--s~s~D~----~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~-----------~I~iW  127 (342)
                      ...++|++..+  +.+..|    .++++|+.+++...-.-....-.++.|.++++.|+-...|.           .|.+|
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~  207 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH  207 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence            45667777653  334444    48899998875321110111123499999987765444333           37888


Q ss_pred             cCCCCCCcceeeeeecCCCCcEE--EEeccCCeEEEEEcCC----eEEEEeCCCC
Q 019384          128 DPRGASGQERTLVGTYPQPERVY--SLSLVGNRLVVATAGR----HVNVYDLRNM  176 (342)
Q Consensus       128 d~~~~~~~~~~~~~~~~~~~~v~--~~s~~~~~~~~~s~d~----~v~iwd~~~~  176 (342)
                      ++.+.......++.........+  ..+.+++.+++.+..+    .+.+.|+...
T Consensus       208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            87654332122333222222122  3445566655433332    4777787764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=90.11  E-value=16  Score=34.02  Aligned_cols=95  Identities=17%  Similarity=0.255  Sum_probs=49.6

Q ss_pred             CCCcEEEEECCCceeeeeeecC---CceEEEEEe--CCCC-eE-EEecCCcEEEEEe-ccCc---eeecc-------cC-
Q 019384           39 WDKSVRLYDASANVLRGEFMHG---GPVLDCCFH--DDSS-GF-SASADHTVRRLVF-SHGK---EDILG-------KH-   99 (342)
Q Consensus        39 ~Dgti~vwd~~~~~~~~~~~h~---~~V~~~~~~--~~~~-~~-s~s~D~~i~~w~~-~~~~---~~~~~-------~h-   99 (342)
                      +-.++.+||+.+.+++..+.-.   ..+.-+.|.  |+.. -+ .+.-...|.+|.- +.+.   +.++.       +- 
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence            4578999999998877766433   346788886  3333 23 3344445544433 2222   11110       00 


Q ss_pred             -----------CcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCC
Q 019384          100 -----------DAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGAS  133 (342)
Q Consensus       100 -----------~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~  133 (342)
                                 -.-|+.|..+.|+++| +++-.+|.||.||+....
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence                       1347888999999888 567788999999986543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.83  E-value=3.3  Score=34.93  Aligned_cols=28  Identities=7%  Similarity=0.038  Sum_probs=23.2

Q ss_pred             EEcCCCCeEEEEeCCCcEEEEECCCcee
Q 019384           26 RFSNHSDHLLVSSWDKSVRLYDASANVL   53 (342)
Q Consensus        26 ~fs~~~~~l~s~s~Dgti~vwd~~~~~~   53 (342)
                      .+...+.+|+.-..+|.+++||+.+++.
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~   44 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKA   44 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCee
Confidence            3456788899999999999999987654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=89.80  E-value=11  Score=31.86  Aligned_cols=78  Identities=13%  Similarity=0.088  Sum_probs=47.1

Q ss_pred             eeEEEEeCCCCEE-EEeeCCCcEEEEc--CCCCCCcce-eeeeec-----CC-CCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384          103 VRCIEYSYAAGQV-ITGSWDKSLKCWD--PRGASGQER-TLVGTY-----PQ-PERVYSLSLVGNRLVVATAGRHVNVYD  172 (342)
Q Consensus       103 V~~~~~~~~~~~l-~sgs~D~~I~iWd--~~~~~~~~~-~~~~~~-----~~-~~~v~~~s~~~~~~~~~s~d~~v~iwd  172 (342)
                      -+.++|+.+.+.+ ++-+.+-+|.-||  ..++....+ ..+.-.     .+ ...-.+++..++..+++-.+++|..+|
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            3468888777766 5678888998898  433321111 111110     11 111234455677778888889999999


Q ss_pred             CCCCCCcc
Q 019384          173 LRNMSQPE  180 (342)
Q Consensus       173 ~~~~~~~~  180 (342)
                      ..+++...
T Consensus       240 p~tGK~L~  247 (310)
T KOG4499|consen  240 PTTGKILL  247 (310)
T ss_pred             CCCCcEEE
Confidence            99886543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=89.77  E-value=16  Score=33.50  Aligned_cols=37  Identities=11%  Similarity=0.021  Sum_probs=21.9

Q ss_pred             CeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEE
Q 019384          265 GFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAV  302 (342)
Q Consensus       265 g~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las  302 (342)
                      |.|.-++...++......++ ...+.++|+|+|+++++
T Consensus       164 g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       164 GGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFC  200 (367)
T ss_pred             ceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEE
Confidence            44555555543322222343 33579999999998765

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.75  E-value=13  Score=32.47  Aligned_cols=53  Identities=23%  Similarity=0.271  Sum_probs=33.8

Q ss_pred             EEcCCCCeEEEEeCC-----CcEEEEECCCce-eeee-eecCCceEEEEEeCCCCeEEEe
Q 019384           26 RFSNHSDHLLVSSWD-----KSVRLYDASANV-LRGE-FMHGGPVLDCCFHDDSSGFSAS   78 (342)
Q Consensus        26 ~fs~~~~~l~s~s~D-----gti~vwd~~~~~-~~~~-~~h~~~V~~~~~~~~~~~~s~s   78 (342)
                      .||+||.+|...=.|     |.|-|||...+. ...+ ..|.-....+.+.+|++++...
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva  179 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA  179 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe
Confidence            588999888765444     888899987432 2222 2455555677777777665433

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.04  E-value=6.8  Score=32.66  Aligned_cols=122  Identities=18%  Similarity=0.155  Sum_probs=66.6

Q ss_pred             EEeccC-CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeE------EEE-Eeech-h
Q 019384          151 SLSLVG-NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRV------AME-FFDLS-E  221 (342)
Q Consensus       151 ~~s~~~-~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~------~i~-~~d~~-~  221 (342)
                      .++..+ +.++.++.+..|..|++.....+.... -+.-..+..+..+..|+++++...+...      +++ -|... +
T Consensus        22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~-F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~  100 (215)
T PF14761_consen   22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCT-FSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE  100 (215)
T ss_pred             eeeccCCceEEEEcCCCEEEEEEcccCCCceeEE-EcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence            344445 677677888899999998433222111 1112346677888889998887654322      221 23322 1


Q ss_pred             hhhcccceeeeEEecCCC------------CceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384          222 ASQAKKYAFKCHRKSEAG------------RDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       222 ~~~~~~~~~~~h~~~~~~------------~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~  274 (342)
                      ....-...+.+|.-....            .....++.+++..|-...|+.|+ ++.+.||....
T Consensus       101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~  164 (215)
T PF14761_consen  101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY  164 (215)
T ss_pred             cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence            111111123343221110            01123577889888877777776 45889997653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.03  E-value=4  Score=34.46  Aligned_cols=55  Identities=15%  Similarity=0.220  Sum_probs=42.5

Q ss_pred             EcCCCCeEEEecCCCeEEEEeCCCceeeec-------cC-------CCCcceEEEEECCCCCEEEEEEe
Q 019384          251 FHPIYGTFATGGCDGFVNVWDGNNKKRLYQ-------YS-------KYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       251 ~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~-------~~-------~~~~~V~~v~~spdg~~las~s~  305 (342)
                      +...+.+|++-..+|.+++||+.+++.+..       +.       .....|..+.++.+|.-|++-+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn   86 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN   86 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC
Confidence            445688899999999999999998765432       12       24567899999999998887663

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=88.80  E-value=11  Score=37.12  Aligned_cols=105  Identities=18%  Similarity=0.182  Sum_probs=66.8

Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee--eecCCceEEEEEe--CCCC-eEEEecCCcEEEEEec-----cC-
Q 019384           23 SNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE--FMHGGPVLDCCFH--DDSS-GFSASADHTVRRLVFS-----HG-   91 (342)
Q Consensus        23 ~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~--~~h~~~V~~~~~~--~~~~-~~s~s~D~~i~~w~~~-----~~-   91 (342)
                      .-++-|+-++..+.-+.-.++.|||...+.+..+  +...+.|.++.|.  ++++ +++.|..+.|.++---     .. 
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~  112 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG  112 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence            3344444444444444557899999988764433  3457899999995  6665 4688999988777421     11 


Q ss_pred             c------eeecccCC-cceeEEEEeCCCCEEEEeeCCCcEEEEcC
Q 019384           92 K------EDILGKHD-APVRCIEYSYAAGQVITGSWDKSLKCWDP  129 (342)
Q Consensus        92 ~------~~~~~~h~-~~V~~~~~~~~~~~l~sgs~D~~I~iWd~  129 (342)
                      .      ..-+..|+ .+|....|.++|..++.+  ++.+.|+|.
T Consensus       113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             cccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            0      01134555 678999999888665543  357888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=88.79  E-value=31  Score=35.43  Aligned_cols=291  Identities=15%  Similarity=0.082  Sum_probs=130.3

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee--ecCCceEEEEEeC--CC-----CeEEEecCCcEEEEEe-c
Q 019384           20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF--MHGGPVLDCCFHD--DS-----SGFSASADHTVRRLVF-S   89 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~--~h~~~V~~~~~~~--~~-----~~~s~s~D~~i~~w~~-~   89 (342)
                      .+++..+-+.+...++.++.++.+...++..+.++...  .-...|.|+.++|  +.     .++.|.++..+.+.-. .
T Consensus       488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p  567 (1096)
T KOG1897|consen  488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP  567 (1096)
T ss_pred             CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence            33443333444445666666666666666544432222  2346788888873  22     2346666666544432 2


Q ss_pred             cCceee---cccC--CcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC--CCCcEEEEeccCCeEEEE
Q 019384           90 HGKEDI---LGKH--DAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP--QPERVYSLSLVGNRLVVA  162 (342)
Q Consensus        90 ~~~~~~---~~~h--~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~v~~~s~~~~~~~~~  162 (342)
                      ......   +.+-  -..|.-..+--|..+|+++..||.+..+-+...+++.......+-  .+.....++.....-+.|
T Consensus       568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa  647 (1096)
T KOG1897|consen  568 DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFA  647 (1096)
T ss_pred             CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEE
Confidence            211111   1110  012334444445778999999999887755433332111110010  122333454444444555


Q ss_pred             EcCCeEEEEeCCCCCCcccccccccce-eeEEEEEeeC-CceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCC
Q 019384          163 TAGRHVNVYDLRNMSQPEQRRESSLKY-QTRCVRCYPN-GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGR  240 (342)
Q Consensus       163 s~d~~v~iwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~  240 (342)
                      ..|+-..+|--+.. .....  ...+. ...|-..++. ...++++.. +.+.  +..+.+........+.         
T Consensus       648 ~sdrP~viY~~n~k-Lv~sp--ls~kev~~~c~f~s~a~~d~l~~~~~-~~l~--i~tid~iqkl~irtvp---------  712 (1096)
T KOG1897|consen  648 LSDRPTVIYSSNGK-LVYSP--LSLKEVNHMCPFNSDAYPDSLASANG-GALT--IGTIDEIQKLHIRTVP---------  712 (1096)
T ss_pred             eCCCCEEEEecCCc-EEEec--cchHHhhhhcccccccCCceEEEecC-CceE--EEEecchhhcceeeec---------
Confidence            56655555543321 00000  00000 0011101111 123344333 3332  2333222111111111         


Q ss_pred             ceeeeeeEEEEcCCCCeEEEecC-----------C---CeEEEEeCCCceeeeccC--CC--CcceEEEEECCC-CCEEE
Q 019384          241 DIVYPVNAIAFHPIYGTFATGGC-----------D---GFVNVWDGNNKKRLYQYS--KY--PTSIAALSFSRD-GRLLA  301 (342)
Q Consensus       241 ~~~~~v~~v~~sp~~~~l~sgs~-----------D---g~I~iWd~~~~~~~~~~~--~~--~~~V~~v~~spd-g~~la  301 (342)
                       ..++...+++.+....+++.+.           .   ..++++|-++.+.+..++  ..  .-.|.++.|..| +.+++
T Consensus       713 -l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~v  791 (1096)
T KOG1897|consen  713 -LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYV  791 (1096)
T ss_pred             -CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEE
Confidence             1124566777764444443321           1   137778877765554322  11  124666679888 88999


Q ss_pred             EEEeccccCCCCCCCCCcEEEEEccC
Q 019384          302 VASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       302 s~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      +|.+..+.+-..+ ..--|++++.++
T Consensus       792 VGT~~v~Pde~ep-~~GRIivfe~~e  816 (1096)
T KOG1897|consen  792 VGTGLVYPDENEP-VNGRIIVFEFEE  816 (1096)
T ss_pred             EEEEeeccCCCCc-ccceEEEEEEec
Confidence            9998543322211 111377776665

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.65  E-value=15  Score=34.21  Aligned_cols=109  Identities=10%  Similarity=0.163  Sum_probs=63.2

Q ss_pred             EEEEeCCCCeEEEecCCcEEEEEeccCceee---c-ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeee
Q 019384           65 DCCFHDDSSGFSASADHTVRRLVFSHGKEDI---L-GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLV  140 (342)
Q Consensus        65 ~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~---~-~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~  140 (342)
                      .+-|.+.++++.|...+-+.-|.....+...   + -...++|.++.|++|.+.||.--.|.+|.+.......... ...
T Consensus        27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l-~~~  105 (657)
T KOG2377|consen   27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL-EYT  105 (657)
T ss_pred             ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh-HHH
Confidence            3444455555555555666666655443221   1 1244699999999999999999999999999864322111 111


Q ss_pred             eecC-CCCcEEEEeccCC-eEEEEEcCCeEEEEeCCC
Q 019384          141 GTYP-QPERVYSLSLVGN-RLVVATAGRHVNVYDLRN  175 (342)
Q Consensus       141 ~~~~-~~~~v~~~s~~~~-~~~~~s~d~~v~iwd~~~  175 (342)
                      ..++ ....+..|.|..+ .++..+..| +-+|-...
T Consensus       106 ~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~p  141 (657)
T KOG2377|consen  106 QECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLP  141 (657)
T ss_pred             HHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEch
Confidence            1111 2334677777544 455555443 66665543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=88.50  E-value=1.9  Score=40.45  Aligned_cols=53  Identities=13%  Similarity=0.214  Sum_probs=42.8

Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          254 IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       254 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      .+.++|.||..|-||+||.-....-.-+++....|..+..+.+|++|++.|..
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence            35789999999999999976544444567777889999999999988877764

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.50  E-value=1.1  Score=25.98  Aligned_cols=25  Identities=20%  Similarity=0.341  Sum_probs=17.7

Q ss_pred             CCCCcceEEEEECCCCCEEEEEEec
Q 019384          282 SKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       282 ~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      ......-...+|||||++|+-++..
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~   29 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNR   29 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEEC
T ss_pred             ccCCccccCEEEecCCCEEEEEecC
Confidence            3344567899999999999877653

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=88.38  E-value=16  Score=31.66  Aligned_cols=118  Identities=18%  Similarity=0.211  Sum_probs=63.1

Q ss_pred             eeeeeecCCc--eEEEEEeCCCCeE-EEecCC--cEEEEEeccCceee---cccCCcceeEEEEeCCCCEEEEeeCCCcE
Q 019384           53 LRGEFMHGGP--VLDCCFHDDSSGF-SASADH--TVRRLVFSHGKEDI---LGKHDAPVRCIEYSYAAGQVITGSWDKSL  124 (342)
Q Consensus        53 ~~~~~~h~~~--V~~~~~~~~~~~~-s~s~D~--~i~~w~~~~~~~~~---~~~h~~~V~~~~~~~~~~~l~sgs~D~~I  124 (342)
                      +...+.|...  ..++.|.+++.++ +.+.-|  .++.+++.+++...   +.. .--=-.++.. +++...-.-.+++.
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~-~d~l~qLTWk~~~~  112 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITIL-GDKLYQLTWKEGTG  112 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEE-TTEEEEEESSSSEE
T ss_pred             EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEE-CCEEEEEEecCCeE
Confidence            4455567654  3467786666665 666555  68999999887321   111 0001122222 22222333456788


Q ss_pred             EEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCC
Q 019384          125 KCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMS  177 (342)
Q Consensus       125 ~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~  177 (342)
                      .+||..+-.     .+..+.....-..++.+++.++....+..+.++|..+.+
T Consensus       113 f~yd~~tl~-----~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~  160 (264)
T PF05096_consen  113 FVYDPNTLK-----KIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFK  160 (264)
T ss_dssp             EEEETTTTE-----EEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred             EEEccccce-----EEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccc
Confidence            899986432     222333334455677888888877777889999987764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=88.25  E-value=18  Score=32.16  Aligned_cols=108  Identities=13%  Similarity=0.082  Sum_probs=58.0

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-eeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce--
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-VLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE--   93 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~--   93 (342)
                      +....++.+..++||++++.++.-...+-||.-.. -......-...|..+.|.+++.+...+..+.++.=+......  
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w  221 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETW  221 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccc
Confidence            44578899999999999988877777778886433 233334456789999999888876666777776555111111  


Q ss_pred             -e-ec--ccCCcceeEEEEeCCCCEEEEeeCCCcEE
Q 019384           94 -D-IL--GKHDAPVRCIEYSYAAGQVITGSWDKSLK  125 (342)
Q Consensus        94 -~-~~--~~h~~~V~~~~~~~~~~~l~sgs~D~~I~  125 (342)
                       . ..  ..-.-.+..++|.+++...++|+ .|++.
T Consensus       222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~  256 (302)
T PF14870_consen  222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL  256 (302)
T ss_dssp             ---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE
T ss_pred             ccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE
Confidence             0 11  11223378899998877666555 44443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=88.20  E-value=26  Score=34.55  Aligned_cols=94  Identities=11%  Similarity=0.185  Sum_probs=56.2

Q ss_pred             CcEEEEEeccCceeecc--cCCcceeEEEEe--CCCCEEEEeeCCCcEEEEcCC----CCCCcceeeeee---cC-CCCc
Q 019384           81 HTVRRLVFSHGKEDILG--KHDAPVRCIEYS--YAAGQVITGSWDKSLKCWDPR----GASGQERTLVGT---YP-QPER  148 (342)
Q Consensus        81 ~~i~~w~~~~~~~~~~~--~h~~~V~~~~~~--~~~~~l~sgs~D~~I~iWd~~----~~~~~~~~~~~~---~~-~~~~  148 (342)
                      ..+.+||...+....-.  ...+.|..++|.  |+++.+++.+..+.|.++--.    .........+..   .. .+..
T Consensus        51 ~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~  130 (631)
T PF12234_consen   51 SELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHP  130 (631)
T ss_pred             CEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCC
Confidence            35889998877633222  346789999986  588899999999999998421    001110111111   11 1133


Q ss_pred             EEEEeccCCeEEEEEcCCeEEEEeCC
Q 019384          149 VYSLSLVGNRLVVATAGRHVNVYDLR  174 (342)
Q Consensus       149 v~~~s~~~~~~~~~s~d~~v~iwd~~  174 (342)
                      +.+..+.++..++.+.++.+.++|-.
T Consensus       131 Igds~Wl~~G~LvV~sGNqlfv~dk~  156 (631)
T PF12234_consen  131 IGDSIWLKDGTLVVGSGNQLFVFDKW  156 (631)
T ss_pred             ccceeEecCCeEEEEeCCEEEEECCC
Confidence            44556655555556667788888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.09  E-value=30  Score=34.43  Aligned_cols=52  Identities=13%  Similarity=0.109  Sum_probs=36.4

Q ss_pred             eeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC--CCCcceEEEEECCCC
Q 019384          245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS--KYPTSIAALSFSRDG  297 (342)
Q Consensus       245 ~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~--~~~~~V~~v~~spdg  297 (342)
                      .+..+..||+.++|+-=..+|.|.+-+.+..++...+.  .|..+ ..++|.-+.
T Consensus       218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p-~qm~Wcgnd  271 (829)
T KOG2280|consen  218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPP-KQMAWCGND  271 (829)
T ss_pred             eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCch-HhceeecCC
Confidence            46778999999999999999999999888666555443  33222 255664433

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=87.59  E-value=3.3  Score=24.76  Aligned_cols=31  Identities=19%  Similarity=0.292  Sum_probs=24.7

Q ss_pred             CCeEEEEEcCCC---CeEEEEeCCCcEEEEECCC
Q 019384           20 DGISNLRFSNHS---DHLLVSSWDKSVRLYDASA   50 (342)
Q Consensus        20 ~~V~~l~fs~~~---~~l~s~s~Dgti~vwd~~~   50 (342)
                      ++|.+++|||+.   ++|+-+=.-|.|-|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   4777766669999999974

It contains a characteristic DLL sequence motif.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=87.46  E-value=18  Score=31.31  Aligned_cols=112  Identities=11%  Similarity=-0.113  Sum_probs=60.3

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCC--cEEEEECCCceeeeeeecCCce--EEEEEeCCCCeEEEecCCcEEEEEeccCcee
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDK--SVRLYDASANVLRGEFMHGGPV--LDCCFHDDSSGFSASADHTVRRLVFSHGKED   94 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dg--ti~vwd~~~~~~~~~~~h~~~V--~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~   94 (342)
                      ......+.|..++.++-|.+.-|  .|+.+|+.+++......-....  -.++...+......=.++...+||..+-+..
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEE
Confidence            34455688877888888877655  8999999988755433222222  2333333322223334566667777654422


Q ss_pred             ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCC
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA  132 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~  132 (342)
                      .--.....=+.++  .+++.|+.+.....|..+|.++-
T Consensus       124 ~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f  159 (264)
T PF05096_consen  124 GTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF  159 (264)
T ss_dssp             EEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-
T ss_pred             EEEecCCcceEEE--cCCCEEEEECCccceEEECCccc
Confidence            1111112334555  35667777666778999997653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=87.41  E-value=7.6  Score=36.15  Aligned_cols=102  Identities=14%  Similarity=0.235  Sum_probs=55.8

Q ss_pred             EEEEeeCCceEEEEccCCeEEE-EEeechhhh-hcccceeeeEEecCCCC-ceeeeeeEEEE--------cCCCCeEEEe
Q 019384          193 CVRCYPNGTGYALSSVEGRVAM-EFFDLSEAS-QAKKYAFKCHRKSEAGR-DIVYPVNAIAF--------HPIYGTFATG  261 (342)
Q Consensus       193 ~v~~~~~~~~~~~~s~~~~~~i-~~~d~~~~~-~~~~~~~~~h~~~~~~~-~~~~~v~~v~~--------sp~~~~l~sg  261 (342)
                      .++.+|++..++++-.+.-+.+ ..|+..... ....+.+..+....... +....+.++-+        .||...++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4567788887777765544332 345442211 22233333332222111 22233444444        2456789999


Q ss_pred             cCCCeEEEEeCCCceeeeccCCCCcceEEEEECC
Q 019384          262 GCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSR  295 (342)
Q Consensus       262 s~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~sp  295 (342)
                      -.+|.|++|.-. +.++..-.-|..+|..+.+-.
T Consensus        86 ~ssG~vrfyte~-G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   86 TSSGYVRFYTEN-GVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             ecccEEEEEecc-chHHHHHhcCccceEEEEecc
Confidence            999999999764 555443334677777777633

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=87.36  E-value=36  Score=34.61  Aligned_cols=63  Identities=16%  Similarity=0.068  Sum_probs=41.7

Q ss_pred             CCeEEEEeCCCcEEEEECCCceeeeeeecCCce---------EEEEEe-----------------CCCCeEEEecCCcEE
Q 019384           31 SDHLLVSSWDKSVRLYDASANVLRGEFMHGGPV---------LDCCFH-----------------DDSSGFSASADHTVR   84 (342)
Q Consensus        31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V---------~~~~~~-----------------~~~~~~s~s~D~~i~   84 (342)
                      ++.|..++.++.|.=.|..+++.+-.+..+..+         ..+.+.                 .+++++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            567777888899998999888766554333221         123332                 123567888899888


Q ss_pred             EEEeccCce
Q 019384           85 RLVFSHGKE   93 (342)
Q Consensus        85 ~w~~~~~~~   93 (342)
                      -.|.++++.
T Consensus       274 ALDA~TGk~  282 (764)
T TIGR03074       274 ALDADTGKL  282 (764)
T ss_pred             EEECCCCCE
Confidence            888877764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=87.14  E-value=19  Score=31.11  Aligned_cols=63  Identities=19%  Similarity=0.159  Sum_probs=42.6

Q ss_pred             eeeEEEEcCCCCeEEEec---CCCeEEEEeCC---Cc--eee----eccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          245 PVNAIAFHPIYGTFATGG---CDGFVNVWDGN---NK--KRL----YQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       245 ~v~~v~~sp~~~~l~sgs---~Dg~I~iWd~~---~~--~~~----~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      .|.++.+||||..+|.-.   .++.|.|=-+.   ++  ..+    .........+.+++|.+++.+++.+...+
T Consensus       113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence            589999999999876544   45677776432   22  111    12223346889999999999888776544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.40  E-value=26  Score=31.92  Aligned_cols=50  Identities=12%  Similarity=-0.013  Sum_probs=35.6

Q ss_pred             CcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCC
Q 019384           81 HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG  131 (342)
Q Consensus        81 ~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~  131 (342)
                      +.+.++|+.++....+......+....|+|+++.++-.. ++-|.+++..+
T Consensus        23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~   72 (353)
T PF00930_consen   23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLAT   72 (353)
T ss_dssp             EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTT
T ss_pred             eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCC
Confidence            456788888877555544466788899999999887664 57788888653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.92  E-value=2.7  Score=36.56  Aligned_cols=56  Identities=23%  Similarity=0.351  Sum_probs=44.4

Q ss_pred             EEcCCCCeEEEec-----CCCeEEEEeCCCc-eeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          250 AFHPIYGTFATGG-----CDGFVNVWDGNNK-KRLYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       250 ~~sp~~~~l~sgs-----~Dg~I~iWd~~~~-~~~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                      +|||||.+|...-     .-|.|-|||.+.+ ..+.++..|.---..|.+.+||+.|+.+..
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence            5899999875532     3568999998754 457788888877799999999999887765

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.20  E-value=10  Score=35.91  Aligned_cols=107  Identities=11%  Similarity=0.067  Sum_probs=64.0

Q ss_pred             CCCCCCccCCCCC----------CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCc-eEEEEEeCCCCe
Q 019384            6 PPPTSGRELGNPP----------SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGP-VLDCCFHDDSSG   74 (342)
Q Consensus         6 ~~~~~~~~~~~~~----------~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~-V~~~~~~~~~~~   74 (342)
                      +||-.+.++.+..          .-.|..|..++.|..+|-+|-||.+.++=...-..-+.+.-+.+ |+|-.|+-+.++
T Consensus        80 ~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~  159 (741)
T KOG4460|consen   80 GPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERF  159 (741)
T ss_pred             cCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccccee
Confidence            4566666665433          34788899999999999999999776654221111122222223 444445444454


Q ss_pred             EEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCC---CEEEEeeCCCcEEEEcCCCC
Q 019384           75 FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAA---GQVITGSWDKSLKCWDPRGA  132 (342)
Q Consensus        75 ~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~---~~l~sgs~D~~I~iWd~~~~  132 (342)
                      ++.+..                    -.+..++|+|+.   ..|..-+.|.+||+||+...
T Consensus       160 ftss~~--------------------ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  160 FTSSTS--------------------LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP  200 (741)
T ss_pred             eccCCc--------------------eeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence            443311                    124567788854   45666678899999997643

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=84.67  E-value=4.3  Score=23.56  Aligned_cols=30  Identities=20%  Similarity=0.145  Sum_probs=21.3

Q ss_pred             CCCCeE-EEecCCCeEEEEeCCCceeeeccC
Q 019384          253 PIYGTF-ATGGCDGFVNVWDGNNKKRLYQYS  282 (342)
Q Consensus       253 p~~~~l-~sgs~Dg~I~iWd~~~~~~~~~~~  282 (342)
                      |++++| ++...+++|.++|..+++.+..+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            466655 445568899999998877665544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=83.79  E-value=31  Score=30.68  Aligned_cols=224  Identities=17%  Similarity=0.180  Sum_probs=93.5

Q ss_pred             cCCceEEEEEeCCCCeEEEecCCcEEEEEecc-Cc-ee--ecccC---CcceeEEEEeCCCCEEEEeeCCCcEEEEcCCC
Q 019384           59 HGGPVLDCCFHDDSSGFSASADHTVRRLVFSH-GK-ED--ILGKH---DAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG  131 (342)
Q Consensus        59 h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~-~~-~~--~~~~h---~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~  131 (342)
                      -...+.++.|.++..-+..+..+.|  +.... ++ -.  .....   .-...++.|.. ...++. +..+.|..-. +.
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~iv-G~~g~ll~T~-Dg   89 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIV-GEPGLLLHTT-DG   89 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE-----S-----EEEEEEEET-TEEEEE-EETTEEEEES-ST
T ss_pred             CCCceEEEEEecCCEEEEEecCCEE--EEECCCCccccccccCCCccceeeEEEEEecC-CceEEE-cCCceEEEec-CC
Confidence            3557889999866666666666754  22222 11 11  11111   12356777764 334444 4455433221 22


Q ss_pred             CCCcceeeee-ecCCCCcEEEEec-cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC
Q 019384          132 ASGQERTLVG-TYPQPERVYSLSL-VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE  209 (342)
Q Consensus       132 ~~~~~~~~~~-~~~~~~~v~~~s~-~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~  209 (342)
                      +..  -..+. ....+.....+.. .++....++..+.  +|--.++-..-+.........+..+...++|.++++++..
T Consensus        90 G~t--W~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G  165 (302)
T PF14870_consen   90 GKT--WERVPLSSKLPGSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG  165 (302)
T ss_dssp             TSS---EE----TT-SS-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred             CCC--cEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence            211  11111 0111222222222 2333333443332  3333322221111111222345566678899877777654


Q ss_pred             CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEe-CCCceeeec----cCCC
Q 019384          210 GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWD-GNNKKRLYQ----YSKY  284 (342)
Q Consensus       210 ~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd-~~~~~~~~~----~~~~  284 (342)
                      . +. .-||....    .  ...|....     ...|.++.|.|++...+.+ ..|.|+.=+ ..+......    ...-
T Consensus       166 ~-~~-~s~~~G~~----~--w~~~~r~~-----~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~  231 (302)
T PF14870_consen  166 N-FY-SSWDPGQT----T--WQPHNRNS-----SRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTN  231 (302)
T ss_dssp             S-EE-EEE-TT-S----S---EEEE--S-----SS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS-
T ss_pred             c-EE-EEecCCCc----c--ceEEccCc-----cceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccC
Confidence            4 32 22443211    1  12232211     1258999999997765544 788888877 233222221    1112


Q ss_pred             CcceEEEEECCCCCEEEEEEe
Q 019384          285 PTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       285 ~~~V~~v~~spdg~~las~s~  305 (342)
                      .-.+.+++|.+++...|+|++
T Consensus       232 ~~~~ld~a~~~~~~~wa~gg~  252 (302)
T PF14870_consen  232 GYGILDLAYRPPNEIWAVGGS  252 (302)
T ss_dssp             -S-EEEEEESSSS-EEEEEST
T ss_pred             ceeeEEEEecCCCCEEEEeCC
Confidence            224899999999998887765

>PHA02713 hypothetical protein; Provisional

Probab=83.19  E-value=48  Score=32.40  Aligned_cols=52  Identities=4%  Similarity=0.081  Sum_probs=30.9

Q ss_pred             CCCeEEEecCC------CeEEEEeCCC-c--eeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          254 IYGTFATGGCD------GFVNVWDGNN-K--KRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       254 ~~~~l~sgs~D------g~I~iWd~~~-~--~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      ++..++.|+.+      ..+..||.++ .  ..+..+.........++  -+|++.++|+.++
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~  523 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYES  523 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecc
Confidence            46777778764      2477899876 3  33444443333333333  3889888888544

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=83.00  E-value=6.9  Score=32.64  Aligned_cols=49  Identities=18%  Similarity=0.237  Sum_probs=37.0

Q ss_pred             CeEEEecCCCeEEEEeCCC--ceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          256 GTFATGGCDGFVNVWDGNN--KKRLYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       256 ~~l~sgs~Dg~I~iWd~~~--~~~~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                      +.|..+...+.|.+|+++.  ...+.++..- +.|..+.++.-|.||++=-.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~   79 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE   79 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence            5555556677899999883  3445666654 78999999999999998654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=82.69  E-value=55  Score=32.76  Aligned_cols=106  Identities=15%  Similarity=0.080  Sum_probs=64.1

Q ss_pred             CeEEEEEcCCeEEEEeCCCCC-----------Ccccc------cccccceeeEEEEEe--eCCceEEEEccCCeEEEEEe
Q 019384          157 NRLVVATAGRHVNVYDLRNMS-----------QPEQR------RESSLKYQTRCVRCY--PNGTGYALSSVEGRVAMEFF  217 (342)
Q Consensus       157 ~~~~~~s~d~~v~iwd~~~~~-----------~~~~~------~~~~~~~~~~~v~~~--~~~~~~~~~s~~~~~~i~~~  217 (342)
                      +.++.|..||.|.+|......           ....+      ....+......++++  .....+|+++....|.+..+
T Consensus       115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf  194 (717)
T PF08728_consen  115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF  194 (717)
T ss_pred             eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence            367888999999999753210           00000      001112234567777  67778888888888888666


Q ss_pred             echhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC------CeEEEecCCCeEEEEeC
Q 019384          218 DLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY------GTFATGGCDGFVNVWDG  272 (342)
Q Consensus       218 d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~------~~l~sgs~Dg~I~iWd~  272 (342)
                      .....   +.+....|       .+.+.|.+|+|-++.      .+|++++=.|.+.+|++
T Consensus       195 ~l~~~---r~~~~~s~-------~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  195 ALVDE---RFYHVPSH-------QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ecccc---cccccccc-------ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            66321   11111111       123468899997653      27888889999888877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.50  E-value=64  Score=33.91  Aligned_cols=61  Identities=10%  Similarity=0.127  Sum_probs=44.6

Q ss_pred             eeeEEEEcCCCCeEEEecCCCeEEEEeCCCc--eeeeccCC-CCcceEEEEECCCCCEEEEEEe
Q 019384          245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNK--KRLYQYSK-YPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       245 ~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~--~~~~~~~~-~~~~V~~v~~spdg~~las~s~  305 (342)
                      .+.|++|+|.|..++.|-..|++.-|...-.  +.+....- -..+|.+|.|--.-.+|++-+.
T Consensus       200 ~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~n  263 (1405)
T KOG3630|consen  200 SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYGN  263 (1405)
T ss_pred             ceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEecc
Confidence            5789999999999999999999999865432  22222111 1468999999877777776553

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=81.42  E-value=30  Score=31.22  Aligned_cols=101  Identities=12%  Similarity=0.140  Sum_probs=53.2

Q ss_pred             CeEEEEEcCCCCeEEEEeCCCcEEEEECCCce--eeeee-----ecCCceEEEEEeCC----CCeEEEec-C--------
Q 019384           21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANV--LRGEF-----MHGGPVLDCCFHDD----SSGFSASA-D--------   80 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~--~~~~~-----~h~~~V~~~~~~~~----~~~~s~s~-D--------   80 (342)
                      .-++++|.|||+.|++ -..|+|++++.....  .....     ........+++.|+    +.++.+.. .        
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            3578999999987775 459999999943322  11111     12345788999863    45543332 1        


Q ss_pred             CcEEEEEeccC--c----eeec---cc---CCcceeEEEEeCCCCEEEEeeCCC
Q 019384           81 HTVRRLVFSHG--K----EDIL---GK---HDAPVRCIEYSYAAGQVITGSWDK  122 (342)
Q Consensus        81 ~~i~~w~~~~~--~----~~~~---~~---h~~~V~~~~~~~~~~~l~sgs~D~  122 (342)
                      ..|..|.....  .    ..++   ..   ..-.-..++|.||+.+.++.+..+
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence            13444444433  1    1111   11   122345699999996656555433

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=81.34  E-value=8.2  Score=22.30  Aligned_cols=29  Identities=21%  Similarity=0.277  Sum_probs=19.9

Q ss_pred             CCCCeEEE-EeCCCcEEEEECCCceeeeee
Q 019384           29 NHSDHLLV-SSWDKSVRLYDASANVLRGEF   57 (342)
Q Consensus        29 ~~~~~l~s-~s~Dgti~vwd~~~~~~~~~~   57 (342)
                      |++++|.. .-.+++|.++|..+.+.....
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i   30 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATI   30 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            56666655 446799999999776655443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=81.25  E-value=35  Score=29.45  Aligned_cols=97  Identities=14%  Similarity=0.104  Sum_probs=54.4

Q ss_pred             CeEEEEEcCCCCeEEEEe-CC--CcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEe-cCCcEEEEE-eccCce--
Q 019384           21 GISNLRFSNHSDHLLVSS-WD--KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSAS-ADHTVRRLV-FSHGKE--   93 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s-~D--gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s-~D~~i~~w~-~~~~~~--   93 (342)
                      .+.+.+.|++++.+|... .+  ..+.++..........  -...+..-.|.+++.+.+.. .+...+++. ...+..  
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            788999999999887655 33  4444444333221111  23356666777666655443 344444443 222221  


Q ss_pred             eecc--cCCcceeEEEEeCCCCEEEEee
Q 019384           94 DILG--KHDAPVRCIEYSYAAGQVITGS  119 (342)
Q Consensus        94 ~~~~--~h~~~V~~~~~~~~~~~l~sgs  119 (342)
                      ..+.  .-...|..++++|||.+++--.
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEE
Confidence            1111  1112899999999999876443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=80.84  E-value=53  Score=33.13  Aligned_cols=90  Identities=14%  Similarity=0.250  Sum_probs=51.0

Q ss_pred             ccceeeEEEEEeeCCceEEEEccCCeEEEEE---eechhhhhcccceeeeEEe--c--CCCCceeeeeeEEEEcCC---C
Q 019384          186 SLKYQTRCVRCYPNGTGYALSSVEGRVAMEF---FDLSEASQAKKYAFKCHRK--S--EAGRDIVYPVNAIAFHPI---Y  255 (342)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~---~d~~~~~~~~~~~~~~h~~--~--~~~~~~~~~v~~v~~sp~---~  255 (342)
                      +..+.+..+.++|+|..+++.+..+-..+.+   |-.........-.+.+-.-  .  .......-.|..+.|||.   +
T Consensus        82 ~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   82 PPLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             CCceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            3446678888999999988887766544333   1100000000001111000  0  000111235888999997   4


Q ss_pred             CeEEEecCCCeEEEEeCCCc
Q 019384          256 GTFATGGCDGFVNVWDGNNK  275 (342)
Q Consensus       256 ~~l~sgs~Dg~I~iWd~~~~  275 (342)
                      ..|+.=..|+++|+||+...
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CeEEEEecCCEEEEEecCCC
Confidence            68888888999999998753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=80.54  E-value=11  Score=26.65  Aligned_cols=47  Identities=17%  Similarity=0.124  Sum_probs=29.9

Q ss_pred             EecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          260 TGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       260 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      .+..+|.+.-||..+++...-+.+ -..-+.|++|||+.+|+.+-...
T Consensus        32 e~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~~   78 (89)
T PF03088_consen   32 EGRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETGR   78 (89)
T ss_dssp             HT---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGGG
T ss_pred             cCCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEeccC
Confidence            345678999999998764222221 12358999999999999876554

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=80.40  E-value=4.6  Score=39.26  Aligned_cols=37  Identities=19%  Similarity=0.258  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcC----CCCeEEEEeCCCcEEEEECCCceeee
Q 019384           19 SDGISNLRFSN----HSDHLLVSSWDKSVRLYDASANVLRG   55 (342)
Q Consensus        19 ~~~V~~l~fs~----~~~~l~s~s~Dgti~vwd~~~~~~~~   55 (342)
                      ...+.+++.+.    +..+|++-+.|+++|+||+.++.+..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~  254 (547)
T PF11715_consen  214 SSVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLA  254 (547)
T ss_dssp             ---EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEE
T ss_pred             CCccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence            45566677776    77899999999999999999887644

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	342
3mmy_A	368	Structural And Functional Analysis Of The Interacti		1e-50
1yfq_A	342	High Resolution S. Cerevisiae Bub3 Mitotic Checkpoi		1e-25
2i3t_A	341	Bub3 Complex With Mad3 (Bubr1) Glebs Motif Length =		1e-25
2i3s_A	349	Bub3 Complex With Bub1 Glebs Motif Length = 349		2e-25
1u4c_A	349	Structure Of Spindle Checkpoint Protein Bub3 Length		4e-25
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-07
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-06
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-06
2h9l_A	329	Wdr5delta23 Length = 329		2e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-06
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-05
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-04
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-05
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		9e-05
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-04

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score =  196 bits (498), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 182/340 (53%), Gaps = 27/340 (7%)
Query: 8   PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGG 61
           P    E+ + P D I  L FS  +   + L+  SW   VR +   D+   + + + MH G
Sbjct: 28  PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG 87
Query: 62  PVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITG 118
           PVLD C+ DD S  F+AS D T +    S  +   + +HDAPV+ I +  A     V+TG
Sbjct: 88  PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 119 SWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQ 178
           SWDK+LK WD R ++      +     PER Y   ++    VVATA R + VY L N   
Sbjct: 148 SWDKTLKFWDTRSSNPMMVLQL-----PERCYCADVIYPMAVVATAERGLIVYQLENQPS 202
Query: 179 PEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR 234
             +R ES LK+Q RCV  + +     TG+AL S+EGRVA+ + +    ++   + FKCHR
Sbjct: 203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCHR 261
Query: 235 ----KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
                + A +DI Y VN IAFHP++GT AT G DG  + WD + + +L    +    I+A
Sbjct: 262 SNGTNTSAPQDI-YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA 320
Query: 291 LSFSRDGRLLAVASSYTFEEGDK---PHEPDAIFVRSVNE 327
             F+ +G + A ASSY + +G +   P + + IF+R+  E
Sbjct: 321 CCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE 360

>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint Protein Length = 342

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 140/313 (44%), Gaps = 16/313 (5%)
Query: 13  ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYD---ASANV-LRGEFMHGGPVLDCCF 68
           ++   P D IS+++       LL++SWD S+ +Y     + NV L     +  P+L C F
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 69  HD--DSSGFSASADHTVRR--LVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSL 124
            D  D   +  +    + +  L+ S   + +         C    Y   ++I  SWD  +
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124
Query: 125 KCWDPR----GASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 180
           +  DPR    G    +           +++++    +RL+V      V  + L       
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184
Query: 181 -QRRESSLKYQTRCVRCYPN-GTGYALSSVEGRVAMEFFDLS--EASQAKKYAFKCHRKS 236
               ES LKYQ R V   P    GYA SS++GRVA+EFFD    + + +K++AF+CHR +
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244
Query: 237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRD 296
               ++ YPVN+I F P +    T G DG ++ W+   +K++  ++K+           D
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
Query: 297 GRLLAVASSYTFE 309
             L    S  TF+
Sbjct: 305 NILCLATSDDTFK 317

>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif Length = 341

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 140/313 (44%), Gaps = 16/313 (5%)
Query: 13  ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYD---ASANV-LRGEFMHGGPVLDCCF 68
           ++   P D IS+++       LL++SWD S+ +Y     + NV L     +  P+L C F
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 69  HD--DSSGFSASADHTVRR--LVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSL 124
            D  D   +  +    + +  L+ S   + +         C    Y   ++I  SWD  +
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124
Query: 125 KCWDPR----GASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 180
           +  DPR    G    +           +++++    +RL+V      V  + L       
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184
Query: 181 -QRRESSLKYQTRCVRCYPN-GTGYALSSVEGRVAMEFFDLS--EASQAKKYAFKCHRKS 236
               ES LKYQ R V   P    GYA SS++GRVA+EFFD    + + +K++AF+CHR +
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244
Query: 237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRD 296
               ++ YPVN+I F P +    T G DG ++ W+   +K++  ++K+           D
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
Query: 297 GRLLAVASSYTFE 309
             L    S  TF+
Sbjct: 305 NILCLATSDDTFK 317

>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif Length = 349

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 140/313 (44%), Gaps = 16/313 (5%)
Query: 13  ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYD---ASANV-LRGEFMHGGPVLDCCF 68
           ++   P D IS+++       LL++SWD S+ +Y     + NV L     +  P+L C F
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 69  HD--DSSGFSASADHTVRR--LVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSL 124
            D  D   +  +    + +  L+ S   + +         C    Y   ++I  SWD  +
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124
Query: 125 KCWDPR----GASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 180
           +  DPR    G    +           +++++    +RL+V      V  + L       
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184
Query: 181 -QRRESSLKYQTRCVRCYPN-GTGYALSSVEGRVAMEFFDLS--EASQAKKYAFKCHRKS 236
               ES LKYQ R V   P    GYA SS++GRVA+EFFD    + + +K++AF+CHR +
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244
Query: 237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRD 296
               ++ YPVN+I F P +    T G DG ++ W+   +K++  ++K+           D
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
Query: 297 GRLLAVASSYTFE 309
             L    S  TF+
Sbjct: 305 NILCLATSDDTFK 317

>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3 Length = 349

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 139/313 (44%), Gaps = 16/313 (5%)
Query: 13  ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYD---ASANV-LRGEFMHGGPVLDCCF 68
           ++   P D IS+++       LL++SWD S+ +Y     + NV L     +  P+L C F
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 69  HD--DSSGFSASADHTVRR--LVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSL 124
            D  D   +  +    + +  L+ S   + +         C    Y   ++I  SWD  +
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124
Query: 125 KCWDPR----GASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPE 180
           +  DPR    G    +           ++++     +RL+V      V  + L       
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTXDTNSSRLIVGXNNSQVQWFRLPLCEDDN 184
Query: 181 -QRRESSLKYQTRCVRCYPN-GTGYALSSVEGRVAMEFFDLS--EASQAKKYAFKCHRKS 236
               ES LKYQ R V   P    GYA SS++GRVA+EFFD    + + +K++AF+CHR +
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244
Query: 237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRD 296
               ++ YPVN+I F P +    T G DG ++ W+   +K++  ++K+           D
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
Query: 297 GRLLAVASSYTFE 309
             L    S  TF+
Sbjct: 305 NILCLATSDDTFK 317

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 122/289 (42%), Gaps = 27/289 (9%)
Query: 40  DKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-DILGK 98
           DK+V+L++ +  +L+    H   V    F  D    ++++D    +L   +G+    L  
Sbjct: 37  DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 96
Query: 99  HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA-----SGQERTLVGTYPQP------- 146
           H + VR + +S     + + S DK++K W+  G      +G   ++ G    P       
Sbjct: 97  HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 156
Query: 147 ---ERVYSLSLVGNRLVVATAGRHVNVYDLR----NMSQPEQRRESSLKYQTRCVRCYPN 199
              ++   L     +L+    G   +V+ +       +      + ++K   R  +    
Sbjct: 157 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 216
Query: 200 GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKC-HRKSEAGRDIV---YPVNAIAFHPIY 255
            TG++ SSV G VA      + AS +     K  +R  +  + +      VN +AF P  
Sbjct: 217 LTGHS-SSVRG-VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDG 274
Query: 256 GTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
            T A+   D  V +W+  N + L   + + +S+  ++FS DG+ +A AS
Sbjct: 275 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 322

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21  GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
           GIS++ +S+ S+ L+ +S DK+++++D S+   L+    H   V  C F+  S+   S S
Sbjct: 89  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Query: 79  ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
            D +VR      GK    L  H  PV  + ++     +++ S+D   + WD   ASGQ  
Sbjct: 149 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 206
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
           +TL+     P      S  G  ++ AT    + ++D
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21  GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
           GIS++ +S+ S+ L+ +S DK+++++D S+   L+    H   V  C F+  S+   S S
Sbjct: 91  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 150
Query: 79  ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
            D +VR      GK    L  H  PV  + ++     +++ S+D   + WD   ASGQ  
Sbjct: 151 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 208
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
           +TL+     P      S  G  ++ AT    + ++D
Sbjct: 209 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 244

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21  GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
           GIS++ +S+ S+ L+ +S DK+++++D S+   L+    H   V  C F+  S+   S S
Sbjct: 73  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 79  ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
            D +VR      GK    L  H  PV  + ++     +++ S+D   + WD   ASGQ  
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 190
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
           +TL+     P      S  G  ++ AT    + ++D
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21  GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
           GIS++ +S+ S+ L+ +S DK+++++D S+   L+    H   V  C F+  S+   S S
Sbjct: 67  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 79  ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
            D +VR      GK    L  H  PV  + ++     +++ S+D   + WD   ASGQ  
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 184
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
           +TL+     P      S  G  ++ AT    + ++D
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21  GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
           GIS++ +S+ S+ L+ +S DK+++++D S+   L+    H   V  C F+  S+   S S
Sbjct: 67  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 79  ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
            D +VR      GK    L  H  PV  + ++     +++ S+D   + WD   ASGQ  
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 184
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
           +TL+     P      S  G  ++ AT    + ++D
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21  GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
           GIS++ +S+ S+ L+ +S DK+++++D S+   L+    H   V  C F+  S+   S S
Sbjct: 73  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 79  ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
            D +VR      GK    L  H  PV  + ++     +++ S+D   + WD   ASGQ  
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 190
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
           +TL+     P      S  G  ++ AT    + ++D
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21  GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
           GIS++ +S+ S+ L+ +S DK+++++D S+   L+    H   V  C F+  S+   S S
Sbjct: 84  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 143
Query: 79  ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
            D +VR      GK    L  H  PV  + ++     +++ S+D   + WD   ASGQ  
Sbjct: 144 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 201
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
           +TL+     P      S  G  ++ AT    + ++D
Sbjct: 202 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 237

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21  GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
           GIS++ +S+ S+ L+ +S DK+++++D S+   L+    H   V  C F+  S+   S S
Sbjct: 68  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 127
Query: 79  ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
            D +VR      GK    L  H  PV  + ++     +++ S+D   + WD   ASGQ  
Sbjct: 128 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 185
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
           +TL+     P      S  G  ++ AT    + ++D
Sbjct: 186 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21  GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
           GIS++ +S+ S+ L+ +S DK+++++D S+   L+    H   V  C F+  S+   S S
Sbjct: 66  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 125
Query: 79  ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
            D +VR      GK    L  H  PV  + ++     +++ S+D   + WD   ASGQ  
Sbjct: 126 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 183
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
           +TL+     P      S  G  ++ AT    + ++D
Sbjct: 184 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21  GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
           GIS++ +S+ S+ L+ +S DK+++++D S+   L+    H   V  C F+  S+   S S
Sbjct: 73  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 79  ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
            D +VR      GK    L  H  PV  + ++     +++ S+D   + WD   ASGQ  
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 190
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
           +TL+     P      S  G  ++ AT    + ++D
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21  GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
           GIS++ +S+ S+ L+ +S DK+++++D S+   L+    H   V  C F+  S+   S S
Sbjct: 63  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 122
Query: 79  ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
            D +VR      GK    L  H  PV  + ++     +++ S+D   + WD   ASGQ  
Sbjct: 123 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 180
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
           +TL+     P      S  G  ++ AT    + ++D
Sbjct: 181 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21  GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
           GIS++ +S+ S+ L+ +S DK+++++D S+   L+    H   V  C F+  S+   S S
Sbjct: 72  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 131
Query: 79  ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
            D +VR      GK    L  H  PV  + ++     +++ S+D   + WD   ASGQ  
Sbjct: 132 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 189
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
           +TL+     P      S  G  ++ AT    + ++D
Sbjct: 190 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 225

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21  GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
           GIS++ +S+ S+ L+ +S DK+++++D S+   L+    H   V  C F+  S+   S S
Sbjct: 70  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 79  ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
            D +VR      GK    L  H  PV  + ++     +++ S+D   + WD   ASGQ  
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 187
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
           +TL+     P      S  G  ++ AT    + ++D
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21  GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
           GIS++ +S+ S+ L+ +S DK+++++D S+   L+    H   V  C F+  S+   S S
Sbjct: 70  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 79  ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
            D +VR      GK    L  H  PV  + ++     +++ S+D   + WD   ASGQ  
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 187
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
           +TL+     P      S  G  ++ AT    + ++D
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 21  GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
           GIS++ +S+ S+ L+ +S DK+++++D S+   L+    H   V  C F+  S+   S S
Sbjct: 70  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 79  ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
            D +VR      GK    L  H  PV  + ++     +++ S+D   + WD   ASGQ  
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 187
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
           +TL+     P      S  G  ++ AT    + ++D
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Query: 21  GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
           GIS++ +S+ S+ L+ +S DK+++++D S+   L+    H   V  C F+  S+   S S
Sbjct: 70  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 79  ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
            D +VR      G     L  H  PV  + ++     +++ S+D   + WD   ASGQ  
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 187
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
           +TL+     P      S  G  ++ AT    + ++D
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Query: 21  GISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
           GIS++ +S+ S+ L+ +S DK+++++D S+   L+    H   V  C F+  S+   S S
Sbjct: 70  GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 79  ADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-E 136
            D +VR      G     L  H  PV  + ++     +++ S+D   + WD   ASGQ  
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCL 187
Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
           +TL+     P      S  G  ++ AT    + ++D
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
Query: 22  ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFH-DDSSGFSASA 79
           + ++  S+     L  SWD  +RL+D +A V    F+ H   VL   F  D+    SAS 
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 80  DHTVR--------RLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWD 128
           D T++        +   S G E     H   V C+ +S    Q  +++ SWDK++K W+
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEG----HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 93/232 (40%), Gaps = 29/232 (12%)
Query: 84  RRLV-FSHGKEDILGKHDAPVRCIEYSYAAGQ-VITGSWDKSLKCWDPRGASGQERTLVG 141
           RRL   SH  ED++   D            GQ  ++GSWD  L+ WD   A    R  VG
Sbjct: 424 RRLTGHSHFVEDVVLSSD------------GQFALSGSWDGELRLWD-LAAGVSTRRFVG 470
Query: 142 TYPQPERVYSLSLVGNRLVVATAGRHVNVYD-LRNMSQPEQRRESSLKYQTRCVRCYPNG 200
            + +     + SL   ++V A+  R + +++ L              +    CVR  PN 
Sbjct: 471 -HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529
Query: 201 TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFAT 260
               + S      ++ ++LS           C  +S       Y V+ +A  P     A+
Sbjct: 530 LQPTIVSASWDKTVKVWNLSN----------CKLRSTLAGHTGY-VSTVAVSPDGSLCAS 578
Query: 261 GGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGD 312
           GG DG V +WD    K+LY   +  + I AL FS +   L  A+ +  +  D
Sbjct: 579 GGKDGVVLLWDLAEGKKLYSL-EANSVIHALCFSPNRYWLCAATEHGIKIWD 629

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 28  SNHSDHLLVS-SWDKSVRLYDASANVLRGEFMHG----GPVLDCCFHDDSSGFSASADHT 82
           S   D++++S S D+++++++A      GE +H        + C    +    S S D T
Sbjct: 165 SQMRDNIIISGSTDRTLKVWNAET----GECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 220
Query: 83  VRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVG 141
           +R      G+   +L  H A VRC++Y     +V++G++D  +K WDP      E  L  
Sbjct: 221 LRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPE----TETCLHT 274
Query: 142 TYPQPERVYSLSLVGNRLVVATAGRHVNVYDL 173
                 RVYSL   G  +V  +    + V+D+
Sbjct: 275 LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV 306

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 108/255 (42%), Gaps = 18/255 (7%)
Query: 22  ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFH-DDSSGFSASA 79
           +S++  SN+ +  + +SWD S+RL++      + +F+ H   VL   F  D+    S   
Sbjct: 70  VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 80  DHTVRRLVFSHGKEDIL--GKHDAPVRCIEY--SYAAGQVITGSWDKSLKCWDPRGASGQ 135
           D+ +R           L  G H   V C+ +  S  A  +++G WD  +K WD   A+G 
Sbjct: 130 DNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDL--ATG- 186
Query: 136 ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVR 195
            R +         V S+++  +  + A++ +   V  L ++++ E   E +       + 
Sbjct: 187 -RLVTDLKGHTNYVTSVTVSPDGSLCASSDKD-GVARLWDLTKGEALSEMAAGAPINQIC 244
Query: 196 CYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY 255
             PN      ++ +G   +  FDL    + K    +   + +  + IV    +IA+    
Sbjct: 245 FSPNRYWMCAATEKG---IRIFDL----ENKDIIVELAPEHQGSKKIVPECVSIAWSADG 297
Query: 256 GTFATGGCDGFVNVW 270
            T  +G  D  + VW
Sbjct: 298 STLYSGYTDNVIRVW 312

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 115 VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL-VGNRLVVATAGR---HVNV 170
           V+TGS D  +K W  R     ER  +    +  ++  +S+ + + L +A +     H+ +
Sbjct: 51  VVTGSLDDLVKVWKWR----DERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106
Query: 171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAF 230
           +DL N  Q +      +   T      P+    A  +  G+V +        S  K+Y+ 
Sbjct: 107 WDLENGKQIKSIDAGPVDAWTLAFS--PDSQYLATGTHVGKVNI----FGVESGKKEYSL 160
Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
               K          + +IA+ P     A+G  DG +N++D    K L+    +   I +
Sbjct: 161 DTRGKF---------ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRS 211
Query: 291 LSFSRDGRLLAVAS 304
           L+FS D +LL  AS
Sbjct: 212 LTFSPDSQLLVTAS 225

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 24/178 (13%)
Query: 28  SNHSDHLLVSSWDKSVRLYDASANVLRGEFM--------HGGPVLDCCFH-DDSSGFSAS 78
           SN S HLL +S D +V L+D +A    G+ +        H   V D  +H    S F + 
Sbjct: 189 SNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSV 248
Query: 79  ADHTVRRLVFSHGKEDILGK-------HDAPVRCIEYS-YAAGQVITGSWDKSLKCWDPR 130
           AD   ++L+    + +   K       H A V C+ ++ Y+   + TGS DK++  WD R
Sbjct: 249 ADD--QKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 131 GASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG--RHVNVYDLRNMSQPEQRRESS 186
               +  T      +  +V+      N  ++A++G  R +NV+DL  + + EQ  E +
Sbjct: 307 NLKLKLHTFESHKDEIFQVHWSP--HNETILASSGTDRRLNVWDLSKIGE-EQSAEDA 361

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 24/178 (13%)
Query: 28  SNHSDHLLVSSWDKSVRLYDASANVLRGEFM--------HGGPVLDCCFH-DDSSGFSAS 78
           SN S HLL +S D +V L+D +A    G+ +        H   V D  +H    S F + 
Sbjct: 189 SNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSV 248
Query: 79  ADHTVRRLVFSHGKEDILGK-------HDAPVRCIEYS-YAAGQVITGSWDKSLKCWDPR 130
           AD   ++L     + +   K       H A V C+ ++ Y+   + TGS DK++  WD R
Sbjct: 249 ADD--QKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Query: 131 GASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG--RHVNVYDLRNMSQPEQRRESS 186
               +  T      +  +V+      N  ++A++G  R +NV+DL  + + EQ  E +
Sbjct: 307 NLKLKLHTFESHKDEIFQVHWSP--HNETILASSGTDRRLNVWDLSKIGE-EQSAEDA 361

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 109/268 (40%), Gaps = 35/268 (13%)
Query: 22  ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFH-DDSSGFSASA 79
           +S+L  S  +   + SSWDK++RL+D         F+ H   V    F  D+    SA A
Sbjct: 79  VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA 138
Query: 80  DHTVR------RLVFSHGKEDILGKHDAPVRCIEYS---YAAGQV-------ITGSWDKS 123
           +  ++         FS  +++    H   V C+ YS    +A +V        +  WD  
Sbjct: 139 EREIKLWNILGECKFSSAEKE---NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195
Query: 124 LKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG--RHVNVYDLRNMSQPEQ 181
           LK W+    + Q R     +     V  LS+  N   +AT G  + + ++D+ N++ P+ 
Sbjct: 196 LKVWN---TNFQIRYTFKAH--ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ- 249
Query: 182 RRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH--RKSEAG 239
            RE         +   P     A+ + +G   ++ F+L   S+A     +     K+E  
Sbjct: 250 -REFDAGSTINQIAFNPKLQWVAVGTDQG---VKIFNLMTQSKAPVCTIEAEPITKAEGQ 305
Query: 240 RDIVYPVNAIAFHPIYGTFATGGCDGFV 267
           +       ++A++ +      G  DG +
Sbjct: 306 KGKNPQCTSLAWNALGKKLFAGFTDGVI 333

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.98
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.98
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.98
3jro_A	753	Fusion protein of protein transport protein SEC13	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
3jro_A	753	Fusion protein of protein transport protein SEC13	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.84
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.83
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.82
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.8
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.77
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.73
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.73
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.71
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.71
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.69
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.68
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.68
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.65
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.63
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.62
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.6
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.59
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.58
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.57
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.55
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.54
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.54
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.52
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.52
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.52
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.5
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.5
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.49
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.48
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.46
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.46
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.45
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.44
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.42
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.4
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.39
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.39
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.37
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.36
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.34
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.32
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.32
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.29
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.29
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.24
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.23
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.22
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.2
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.19
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.17
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.12
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.11
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.1
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.09
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.09
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.07
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.04
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.03
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.0
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.0
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.95
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.9
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.81
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.74
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.73
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.71
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.7
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.67
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.63
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.61
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.61
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.57
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.55
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.51
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.46
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.45
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.45
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.41
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.41
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.39
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.38
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.37
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.37
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.36
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.35
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.35
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.35
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.33
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.27
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.24
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.24
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.2
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.18
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.18
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.17
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.15
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.1
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.06
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.04
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.01
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.73
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.61
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.61
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.61
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.58
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.52
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.49
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.45
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.42
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.41
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.34
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.33
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.33
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.33
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.27
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.19
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.14
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.03
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.01
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.99
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.81
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.79
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.76
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.75
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.71
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.68
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.6
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.53
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.45
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.16
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.12
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.02
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	95.94
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.9
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	95.84
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.67
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.45
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.32
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.99
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	94.96
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	94.96
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.81
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.58
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.54
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.22
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.05
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.38
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.32
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.16
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.09
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.04
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	92.97
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	92.5
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.97
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.66
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	91.31
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	91.29
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	90.87
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	90.49
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	89.38
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	88.55
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	88.49
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	88.25
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	88.25
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	87.33
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	86.89
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	86.2
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	85.28
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	84.53
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	83.04
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	83.03
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	82.37
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	82.33

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.8e-42  Score=305.10  Aligned_cols=283  Identities=17%  Similarity=0.215  Sum_probs=223.3

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~   93 (342)
                      ..|.+.|++++|+|++++|+|++.||+|+|||+.++... ....|..+|.+++|++++. +++++.|++|++|++.+++.
T Consensus        10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~   89 (304)
T 2ynn_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK   89 (304)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred             cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE
Confidence            468899999999999999999999999999999887644 4457899999999997665 57999999999999988774


Q ss_pred             -eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---CCeEEEEEcCCeEE
Q 019384           94 -DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---GNRLVVATAGRHVN  169 (342)
Q Consensus        94 -~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~~~~~~~s~d~~v~  169 (342)
                       ..+.+|...|.+++|+|++.+|+||+.|++|++||+++.... ...+..  +...+.++.++   +..+++++.|++|+
T Consensus        90 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-~~~~~~--h~~~v~~v~~~p~~~~~l~sgs~D~~v~  166 (304)
T 2ynn_A           90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL-EQTFEG--HEHFVMCVAFNPKDPSTFASGCLDRTVK  166 (304)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEE-EEEECC--CCSCEEEEEECTTCTTEEEEEETTSEEE
T ss_pred             EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcch-hhhhcc--cCCcEEEEEECCCCCCEEEEEeCCCeEE
Confidence             467899999999999999999999999999999998753221 122222  34445555554   45899999999999


Q ss_pred             EEeCCCCCCcccccccccceeeEEEEEee--CCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384          170 VYDLRNMSQPEQRRESSLKYQTRCVRCYP--NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN  247 (342)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  247 (342)
                      +||++........ .......+.++.+.|  ++..+++++.|+.++  +||.+...  ....+.+|..         .|.
T Consensus       167 iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~--iWd~~~~~--~~~~~~~h~~---------~v~  232 (304)
T 2ynn_A          167 VWSLGQSTPNFTL-TTGQERGVNYVDYYPLPDKPYMITASDDLTIK--IWDYQTKS--CVATLEGHMS---------NVS  232 (304)
T ss_dssp             EEETTCSSCSEEE-ECCCTTCEEEEEECCSTTCCEEEEEETTSEEE--EEETTTTE--EEEEEECCSS---------CEE
T ss_pred             EEECCCCCcccee-ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEE--EEeCCCCc--cceeeCCCCC---------CEE
Confidence            9999875432221 112223456677765  677899999999764  59986532  2234445543         699


Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCC--EEEEEEeccccCCCCCCCCCcEEEEEc
Q 019384          248 AIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGR--LLAVASSYTFEEGDKPHEPDAIFVRSV  325 (342)
Q Consensus       248 ~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~--~las~s~~~~~~~~~~~~~~~~~~~~~  325 (342)
                      +++|+|++++|++|+.||+|++||.++++.+.++..|...+++++|+|++.  +||+|+.++            ++++.+
T Consensus       233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g------------~~~~~~  300 (304)
T 2ynn_A          233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG------------FTVLSL  300 (304)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE------------EEEEEC
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc------------eEEEEe
Confidence            999999999999999999999999999999999999999999999999986  577776554            777766


Q ss_pred             cC
Q 019384          326 NE  327 (342)
Q Consensus       326 ~~  327 (342)
                      .+
T Consensus       301 ~~  302 (304)
T 2ynn_A          301 GN  302 (304)
T ss_dssp             C-
T ss_pred             cc
Confidence            53

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.7e-42  Score=312.15  Aligned_cols=281  Identities=16%  Similarity=0.142  Sum_probs=213.0

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC------------ceeeeeeecCCceEEEEEeCCCCeEEEecCCcEE
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA------------NVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVR   84 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~------------~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~   84 (342)
                      .+...|.+++|+|||++|++++ |+++|+||...            +.......|...|.+++|++++.+++|+.|++|+
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~  106 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVE  106 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEE
Confidence            3466799999999999999887 77888887321            1223344578899999999999999999999999


Q ss_pred             EEEeccCcee-----ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cC-
Q 019384           85 RLVFSHGKED-----ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VG-  156 (342)
Q Consensus        85 ~w~~~~~~~~-----~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~-  156 (342)
                      +||+.+++..     .+.+|...|++++|+|++++|+||+.|++|++||++++..  ...+..  +...+.++.+  ++ 
T Consensus       107 lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~--~~~~~~--h~~~V~~~~~~~~~~  182 (344)
T 4gqb_B          107 LWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV--LSSYRA--HAAQVTCVAASPHKD  182 (344)
T ss_dssp             EEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECC--CSSCEEEEEECSSCT
T ss_pred             EEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE--EEEEcC--cCCceEEEEecCCCC
Confidence            9999887632     3458999999999999999999999999999999976432  222332  3445555555  44 


Q ss_pred             CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCC-ceEEEEccCCeEEEEEeechhhhhcccceeeeEEe
Q 019384          157 NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG-TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK  235 (342)
Q Consensus       157 ~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~  235 (342)
                      ..+++++.|++|++||+++++.............+.+++++|++ ..+++++.|+.+  ++||.+....  ...+.+|..
T Consensus       183 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v--~~wd~~~~~~--~~~~~~h~~  258 (344)
T 4gqb_B          183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV--SLVDTKSTSC--VLSSAVHSQ  258 (344)
T ss_dssp             TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEE--EEEESCC--C--CEEEECCSS
T ss_pred             CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcE--EEEECCCCcE--EEEEcCCCC
Confidence            36789999999999999987543322222223456789999864 567888999976  4599865432  334555543


Q ss_pred             cCCCCceeeeeeEEEEcCCC-CeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCE-EEEEEeccccCCCC
Q 019384          236 SEAGRDIVYPVNAIAFHPIY-GTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRL-LAVASSYTFEEGDK  313 (342)
Q Consensus       236 ~~~~~~~~~~v~~v~~sp~~-~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~-las~s~~~~~~~~~  313 (342)
                               +|++++|+|++ .+|++|+.|++|+|||.++++++ .+.+|.+.|++++||||++. |++++.+.      
T Consensus       259 ---------~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~------  322 (344)
T 4gqb_B          259 ---------CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDH------  322 (344)
T ss_dssp             ---------CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTS------
T ss_pred             ---------CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCC------
Confidence                     69999999998 47999999999999999988754 56899999999999999975 55666555      


Q ss_pred             CCCCCcEEEEEccC
Q 019384          314 PHEPDAIFVRSVNE  327 (342)
Q Consensus       314 ~~~~~~~~~~~~~~  327 (342)
                           .|++|.+.+
T Consensus       323 -----~v~~w~v~~  331 (344)
T 4gqb_B          323 -----QVVHHVVPT  331 (344)
T ss_dssp             -----CEEEEECCC
T ss_pred             -----eEEEEECCC
Confidence                 599998743

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.8e-42  Score=312.77  Aligned_cols=282  Identities=14%  Similarity=0.142  Sum_probs=215.2

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeC------CCcEEEEECCCce-----eeeeeecCCceEEEEEeCCCCeEEEecCCcEE
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSW------DKSVRLYDASANV-----LRGEFMHGGPVLDCCFHDDSSGFSASADHTVR   84 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~------Dgti~vwd~~~~~-----~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~   84 (342)
                      ..|...|++|+|||||++|||||.      |++|++|+..++.     ......|.+.|.+++|++++.+++++.|++|+
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~  118 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVE  118 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEE
Confidence            358899999999999999999997      7889999986643     23445799999999999999999999999999


Q ss_pred             EEEeccCcee-----ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCC
Q 019384           85 RLVFSHGKED-----ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGN  157 (342)
Q Consensus        85 ~w~~~~~~~~-----~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~  157 (342)
                      +||+.+++..     ...+|...|++++|+|++++|++|+.|++|++||++++..  ...+..  +...+.++.+  +++
T Consensus       119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~--~~~~~~--h~~~v~~v~~s~~~~  194 (357)
T 4g56_B          119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV--LKSYNA--HSSEVNCVAACPGKD  194 (357)
T ss_dssp             EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE--EEEECC--CSSCEEEEEECTTCS
T ss_pred             EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE--EEEEcC--CCCCEEEEEEccCCC
Confidence            9999877632     2357999999999999999999999999999999875422  222222  3344555544  443


Q ss_pred             -eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCC-ceEEEEccCCeEEEEEeechhhhhcccceeeeEEe
Q 019384          158 -RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG-TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK  235 (342)
Q Consensus       158 -~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~  235 (342)
                       .+++++.|++|++||+++++.............+.+++++|++ ..+++++.++.+.  +||++.....  ..+..|. 
T Consensus       195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~--~wd~~~~~~~--~~~~~~~-  269 (357)
T 4g56_B          195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVS--LVNIKNPDSA--QTSAVHS-  269 (357)
T ss_dssp             SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEE--EEESSCGGGC--EEECCCS-
T ss_pred             ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccccee--EEECCCCcEe--EEEeccc-
Confidence             6889999999999999887543322222334457899999975 5678888888764  5998654332  2334443 


Q ss_pred             cCCCCceeeeeeEEEEcCCC-CeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECC-CCCEEEEEEeccccCCCC
Q 019384          236 SEAGRDIVYPVNAIAFHPIY-GTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSR-DGRLLAVASSYTFEEGDK  313 (342)
Q Consensus       236 ~~~~~~~~~~v~~v~~sp~~-~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~sp-dg~~las~s~~~~~~~~~  313 (342)
                              .+|++++|+|++ ++|++|+.|++|+|||+++++.+..+ +|...|++|+||| |+++||+++.++      
T Consensus       270 --------~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg------  334 (357)
T 4g56_B          270 --------QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDH------  334 (357)
T ss_dssp             --------SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTS------
T ss_pred             --------eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCC------
Confidence                    269999999997 57899999999999999998877654 7999999999999 899999998766      


Q ss_pred             CCCCCcEEEEEcc
Q 019384          314 PHEPDAIFVRSVN  326 (342)
Q Consensus       314 ~~~~~~~~~~~~~  326 (342)
                           .|.+|.+.
T Consensus       335 -----~v~iW~~~  342 (357)
T 4g56_B          335 -----KVLHHHLP  342 (357)
T ss_dssp             -----CEEEEECC
T ss_pred             -----eEEEEECC
Confidence                 59999875

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-41  Score=315.12  Aligned_cols=282  Identities=16%  Similarity=0.197  Sum_probs=228.1

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~   93 (342)
                      .+|.+.|++++|+|++++|+||+.||+|+|||+.++... ...+|.+.|.+++|++++. +++|+.|++|++||+.+.+.
T Consensus       105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~  184 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC  184 (410)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE
T ss_pred             cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Confidence            478999999999999999999999999999999887644 4557999999999997665 56999999999999988763


Q ss_pred             -eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384           94 -DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD  172 (342)
Q Consensus        94 -~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd  172 (342)
                       ..+.+|...|.+++|+|+++.|++|+.|++|++||++++..  ...+..+......+.++.++..+++++.|++|++||
T Consensus       185 ~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd  262 (410)
T 1vyh_C          185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC--VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV  262 (410)
T ss_dssp             EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence             56789999999999999999999999999999999986432  222333322233334455667899999999999999


Q ss_pred             CCCCCCcccccccccceeeEEEEEeeC--------------------CceEEEEccCCeEEEEEeechhhhhcccceeee
Q 019384          173 LRNMSQPEQRRESSLKYQTRCVRCYPN--------------------GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKC  232 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~--------------------~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~  232 (342)
                      +++.......  ......+.+++++|+                    +..+++++.|+.+  ++||.+....  ...+.+
T Consensus       263 ~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i--~iwd~~~~~~--~~~~~~  336 (410)
T 1vyh_C          263 VATKECKAEL--REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI--KMWDVSTGMC--LMTLVG  336 (410)
T ss_dssp             TTTCCEEEEE--CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE--EEEETTTTEE--EEEEEC
T ss_pred             CCCCceeeEe--cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE--EEEECCCCce--EEEEEC
Confidence            9876432221  223445788999886                    5679999999976  5699865432  233444


Q ss_pred             EEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCC
Q 019384          233 HRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGD  312 (342)
Q Consensus       233 h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~  312 (342)
                      |.         ..|.+++|+|++.+|++|+.||+|++||..+++++..+.+|...|++++|+|++.+|++|+.+.     
T Consensus       337 h~---------~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~-----  402 (410)
T 1vyh_C          337 HD---------NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ-----  402 (410)
T ss_dssp             CS---------SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTS-----
T ss_pred             CC---------CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCC-----
Confidence            43         2699999999999999999999999999999999999999999999999999999999999876     


Q ss_pred             CCCCCCcEEEEEc
Q 019384          313 KPHEPDAIFVRSV  325 (342)
Q Consensus       313 ~~~~~~~~~~~~~  325 (342)
                            .|.+|++
T Consensus       403 ------~i~vW~~  409 (410)
T 1vyh_C          403 ------TVKVWEC  409 (410)
T ss_dssp             ------EEEEEC-
T ss_pred             ------cEEEEeC
Confidence                  5777753

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.9e-40  Score=300.11  Aligned_cols=322  Identities=38%  Similarity=0.665  Sum_probs=252.4

Q ss_pred             CCCCCCccCCCCCCCCeEEEEEcCC---CCeEEEEeCCCcEEEEECCC-cee--eeeeecCCceEEEEEeCCCC-eEEEe
Q 019384            6 PPPTSGRELGNPPSDGISNLRFSNH---SDHLLVSSWDKSVRLYDASA-NVL--RGEFMHGGPVLDCCFHDDSS-GFSAS   78 (342)
Q Consensus         6 ~~~~~~~~~~~~~~~~V~~l~fs~~---~~~l~s~s~Dgti~vwd~~~-~~~--~~~~~h~~~V~~~~~~~~~~-~~s~s   78 (342)
                      ..|..-..+...|.+.|++++|+|+   |++|++|+.||+|+|||+.+ +..  .....|.+.|.+++|++++. +++++
T Consensus        26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  105 (368)
T 3mmy_A           26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS  105 (368)
T ss_dssp             SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence            3455556667899999999999999   69999999999999999986 433  44567999999999997765 57899


Q ss_pred             cCCcEEEEEeccCceeecccCCcceeEEEE--eCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC
Q 019384           79 ADHTVRRLVFSHGKEDILGKHDAPVRCIEY--SYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG  156 (342)
Q Consensus        79 ~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~--~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~  156 (342)
                      .|+.|++|++.++....+.+|...|.+++|  ++++..|++++.|++|++||+++....  ..+   .....+.++.+.+
T Consensus       106 ~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~---~~~~~~~~~~~~~  180 (368)
T 3mmy_A          106 CDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM--MVL---QLPERCYCADVIY  180 (368)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCS--EEE---ECSSCEEEEEEET
T ss_pred             CCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEE--EEE---ecCCCceEEEecC
Confidence            999999999998887777889999999999  888889999999999999999864331  122   2334567777778


Q ss_pred             CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce----EEEEccCCeEEEEEeechhhhh-cccceee
Q 019384          157 NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG----YALSSVEGRVAMEFFDLSEASQ-AKKYAFK  231 (342)
Q Consensus       157 ~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~s~~~~~~i~~~d~~~~~~-~~~~~~~  231 (342)
                      +.+++++.++.+++||++..................++.+.++...    +++++.++.+.+  ||...... .....+.
T Consensus       181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i--~~~~~~~~~~~~~~~~  258 (368)
T 3mmy_A          181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI--HYINPPNPAKDNFTFK  258 (368)
T ss_dssp             TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE--EESSCSCHHHHSEEEE
T ss_pred             CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE--EecCCCCccccceeee
Confidence            8899999999999999987644333333333345566666665544    899999998754  77754322 2334455


Q ss_pred             eEEecC---CCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccc
Q 019384          232 CHRKSE---AGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTF  308 (342)
Q Consensus       232 ~h~~~~---~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~  308 (342)
                      .|....   ....+..+|.+++|+|++++|++|+.||.|++||+++++++..+.+|...|.+++|+|||++|++++.+++
T Consensus       259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~  338 (368)
T 3mmy_A          259 CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDW  338 (368)
T ss_dssp             CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred             eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccc
Confidence            554321   11222336999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCCC---CCCCCcEEEEEccCCccccCCC
Q 019384          309 EEGDK---PHEPDAIFVRSVNEIEVKPKPK  335 (342)
Q Consensus       309 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~  335 (342)
                      ..+-.   ...++.++++++.+ +++||++
T Consensus       339 ~~~~~~~~~~~~~~i~~~~~~~-~~~p~~~  367 (368)
T 3mmy_A          339 SKGHEFYNPQKKNYIFLRNAAE-ELKPRNK  367 (368)
T ss_dssp             TTCGGGCCTTSCCEEEEECCTT-TTSBC--
T ss_pred             cccccccCCCccceeeehhcCc-ccCcccC
Confidence            77665   34555899998877 9999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.7e-41  Score=299.78  Aligned_cols=282  Identities=15%  Similarity=0.191  Sum_probs=224.9

Q ss_pred             CCCCCCeEEEEEcCC----CCeEEEEeCCCcEEEEECCCcee---eeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEE
Q 019384           16 NPPSDGISNLRFSNH----SDHLLVSSWDKSVRLYDASANVL---RGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLV   87 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~----~~~l~s~s~Dgti~vwd~~~~~~---~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~   87 (342)
                      ..|.+.|++|+|+|+    +++|+|||.|++|||||+..+..   ....+|...|.++.|++++. +++++.|++|++||
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd  108 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD  108 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            479999999999985    67899999999999999976543   23457999999999987665 46999999999999


Q ss_pred             eccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC
Q 019384           88 FSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR  166 (342)
Q Consensus        88 ~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~  166 (342)
                      +.+++. ..+..|...+.+++|+|++++|++|+.|++|++||+++...  ...+..+......+.++++++.+++++.|+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~--~~~~~~~~~~v~~~~~spdg~~lasg~~dg  186 (321)
T 3ow8_A          109 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK--EYSLDTRGKFILSIAYSPDGKYLASGAIDG  186 (321)
T ss_dssp             TTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE--EEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce--eEEecCCCceEEEEEECCCCCEEEEEcCCC
Confidence            988774 45677888999999999999999999999999999976432  122222222233345556677999999999


Q ss_pred             eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384          167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV  246 (342)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v  246 (342)
                      .|++||+++++....  .......+.+++++|+++.+++++.|+.+.  +||.+....  ...+.+|.         ..|
T Consensus       187 ~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd~~~l~s~s~dg~i~--iwd~~~~~~--~~~~~~h~---------~~v  251 (321)
T 3ow8_A          187 IINIFDIATGKLLHT--LEGHAMPIRSLTFSPDSQLLVTASDDGYIK--IYDVQHANL--AGTLSGHA---------SWV  251 (321)
T ss_dssp             CEEEEETTTTEEEEE--ECCCSSCCCEEEECTTSCEEEEECTTSCEE--EEETTTCCE--EEEECCCS---------SCE
T ss_pred             eEEEEECCCCcEEEE--EcccCCceeEEEEcCCCCEEEEEcCCCeEE--EEECCCcce--eEEEcCCC---------Cce
Confidence            999999987643221  122344578999999999999999999865  599864322  22334443         269


Q ss_pred             eEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEc
Q 019384          247 NAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSV  325 (342)
Q Consensus       247 ~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~  325 (342)
                      .+++|+|++.+|++|+.|++|+|||+.+++++.++.+|...|++++|+|||++|++++.+.           .|.+|+.
T Consensus       252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~-----------~i~vwd~  319 (321)
T 3ow8_A          252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ-----------EIHIYDC  319 (321)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC-----------CEEEEEC
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCC-----------eEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999998766           4888864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1e-40  Score=301.18  Aligned_cols=274  Identities=19%  Similarity=0.265  Sum_probs=219.5

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc-
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK-   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~-   92 (342)
                      .+|.+.|++++|+|++++|+||+.||+|+|||..++... ....|...|.+++|++++.. ++++.|+.+++|++.+.. 
T Consensus        52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~  131 (340)
T 1got_B           52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG  131 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC
Confidence            689999999999999999999999999999999876543 44578999999999977664 689999999999997753 


Q ss_pred             ----eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCC
Q 019384           93 ----EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGR  166 (342)
Q Consensus        93 ----~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~  166 (342)
                          ...+.+|...|.++.|++++ .+++++.|++|++||++++..  ...+..  +...+.++.+  ++..+++++.|+
T Consensus       132 ~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~--~~~~~~--h~~~v~~~~~~~~~~~l~sg~~d~  206 (340)
T 1got_B          132 NVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQ--TTTFTG--HTGDVMSLSLAPDTRLFVSGACDA  206 (340)
T ss_dssp             SCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEE--EEEECC--CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcE--EEEEcC--CCCceEEEEECCCCCEEEEEeCCC
Confidence                23467899999999999866 599999999999999975432  222222  3344555544  566899999999


Q ss_pred             eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384          167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV  246 (342)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v  246 (342)
                      +|++||+++......  .......+.+++++|++..+++++.|+.+.  +||.+.......+.   |.      .....|
T Consensus       207 ~v~~wd~~~~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~--iwd~~~~~~~~~~~---~~------~~~~~v  273 (340)
T 1got_B          207 SAKLWDVREGMCRQT--FTGHESDINAICFFPNGNAFATGSDDATCR--LFDLRADQELMTYS---HD------NIICGI  273 (340)
T ss_dssp             CEEEEETTTCSEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSCEE--EEETTTTEEEEEEC---CT------TCCSCE
T ss_pred             cEEEEECCCCeeEEE--EcCCcCCEEEEEEcCCCCEEEEEcCCCcEE--EEECCCCcEEEEEc---cC------Ccccce
Confidence            999999987643221  122345688999999999999999999875  59986543221111   11      112358


Q ss_pred             eEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          247 NAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       247 ~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      .+++|+|++.+|++|+.||+|++||..+++.+..+.+|...|.+++|+|||++||+|+.+.
T Consensus       274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~  334 (340)
T 1got_B          274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence            9999999999999999999999999999888889999999999999999999999998766

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.4e-40  Score=298.90  Aligned_cols=309  Identities=24%  Similarity=0.433  Sum_probs=250.7

Q ss_pred             ccCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce----eeeeeecCCceEEEEEeCCCC--eEEEecCCcEEE
Q 019384           12 RELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV----LRGEFMHGGPVLDCCFHDDSS--GFSASADHTVRR   85 (342)
Q Consensus        12 ~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~----~~~~~~h~~~V~~~~~~~~~~--~~s~s~D~~i~~   85 (342)
                      .++..+|.+.|++++|+|++++|++++.||+|+|||+..+.    ......|.+.|.+++|++++.  +++++.|+.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            45677899999999999999999999999999999997765    666778999999999997666  679999999999


Q ss_pred             EEe-ccCceeeccc--CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcc----eeeeeecCCCCcEEEEeccCCe
Q 019384           86 LVF-SHGKEDILGK--HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQE----RTLVGTYPQPERVYSLSLVGNR  158 (342)
Q Consensus        86 w~~-~~~~~~~~~~--h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~----~~~~~~~~~~~~v~~~s~~~~~  158 (342)
                      |++ .++....+.+  |...|.+++|+| ++.|++++.|++|++||+++.....    ...+....+...+.++.++++.
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  162 (342)
T 1yfq_A           84 VDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR  162 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred             EEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc
Confidence            999 8888777888  999999999999 9999999999999999986410000    0112222345667888888888


Q ss_pred             EEEEEcCCeEEEEeCCC-CCCcccccccccceeeEEEEEee-CCceEEEEccCCeEEEEEeechhh--h--hcccceeee
Q 019384          159 LVVATAGRHVNVYDLRN-MSQPEQRRESSLKYQTRCVRCYP-NGTGYALSSVEGRVAMEFFDLSEA--S--QAKKYAFKC  232 (342)
Q Consensus       159 ~~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~s~~~~~~i~~~d~~~~--~--~~~~~~~~~  232 (342)
                      +++++.++.|++||+++ ...............+.+++++| ++..+++++.++.+.+  |+....  .  ......+..
T Consensus       163 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i--~~~~~~~~~~~~~~~~~~~~  240 (342)
T 1yfq_A          163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAV--EFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEE--EECCTTCCSTTCTTCEEEEC
T ss_pred             EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEE--EEEcCCCcccccccceeeec
Confidence            99999999999999988 54333333334455788999999 9999999999998766  555332  1  133445666


Q ss_pred             EEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCC-CcceEEEEECCCCCEEEEEEeccc-cC
Q 019384          233 HRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKY-PTSIAALSFSRDGRLLAVASSYTF-EE  310 (342)
Q Consensus       233 h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-~~~V~~v~~spdg~~las~s~~~~-~~  310 (342)
                      |.....+..+.++|.+++|+|++++|++|+.||.|++||+++++.+..+.+| ...|.+++  |||++|++++.+++ ++
T Consensus       241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~  318 (342)
T 1yfq_A          241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKT  318 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHH
T ss_pred             ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccc
Confidence            6543333344557999999999999999999999999999999999999998 99999999  99999999999998 77


Q ss_pred             CCC-----CCCCCcEEEEE-c
Q 019384          311 GDK-----PHEPDAIFVRS-V  325 (342)
Q Consensus       311 ~~~-----~~~~~~~~~~~-~  325 (342)
                      +.+     +..++.|+++. +
T Consensus       319 ~~~~~~~~~~~~~~i~~~~~~  339 (342)
T 1yfq_A          319 NAAIDQTIELNASSIYIIFDY  339 (342)
T ss_dssp             CSSSCTTSCCCCCEEEEEETC
T ss_pred             cccccccCCCCCceEEEeccc
Confidence            665     67778999987 5

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.1e-40  Score=300.88  Aligned_cols=277  Identities=17%  Similarity=0.240  Sum_probs=219.8

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc-
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK-   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~-   92 (342)
                      .+|.+.|++++|+|++++|||||.||+|+|||..+++. .....|...|.+++|+|++.. ++++.|+.+++|++.... 
T Consensus        61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~  140 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKN  140 (354)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTT
T ss_pred             cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccc
Confidence            57999999999999999999999999999999877654 344568889999999987765 689999999999986542 


Q ss_pred             ------eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc--CCeEEEEEc
Q 019384           93 ------EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV--GNRLVVATA  164 (342)
Q Consensus        93 ------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~  164 (342)
                            ...+.+|...|.+++|+|++..|++++.|++|++||++++..  ...+..+........++++  ++.+++++.
T Consensus       141 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~  218 (354)
T 2pbi_B          141 ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL--LQSFHGHGADVLCLDLAPSETGNTFVSGGC  218 (354)
T ss_dssp             CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECCCSSCCEEEEEET
T ss_pred             ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEcCCCCCeEEEEEEeCCCCCEEEEEeC
Confidence                  234568999999999999999999999999999999976432  2223333222223344443  468999999


Q ss_pred             CCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceee
Q 019384          165 GRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVY  244 (342)
Q Consensus       165 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~  244 (342)
                      |++|++||++++..... . ..+...+.+++++|++..+++++.|+.++  +||++.......+  ..       ..+..
T Consensus       219 Dg~v~~wd~~~~~~~~~-~-~~h~~~v~~v~~~p~~~~l~s~s~D~~v~--lwd~~~~~~~~~~--~~-------~~~~~  285 (354)
T 2pbi_B          219 DKKAMVWDMRSGQCVQA-F-ETHESDVNSVRYYPSGDAFASGSDDATCR--LYDLRADREVAIY--SK-------ESIIF  285 (354)
T ss_dssp             TSCEEEEETTTCCEEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSCEE--EEETTTTEEEEEE--CC-------TTCCS
T ss_pred             CCeEEEEECCCCcEEEE-e-cCCCCCeEEEEEeCCCCEEEEEeCCCeEE--EEECCCCcEEEEE--cC-------CCccc
Confidence            99999999998643221 1 22345688999999999999999999875  5998654222111  10       01123


Q ss_pred             eeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       245 ~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      .+.+++|+|++.+|++|+.|++|++||+.+++.+..+.+|...|.+++|+|||++||+|+.+.
T Consensus       286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~  348 (354)
T 2pbi_B          286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH  348 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence            588999999999999999999999999999988889999999999999999999999999776

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-40  Score=300.49  Aligned_cols=294  Identities=16%  Similarity=0.133  Sum_probs=218.6

Q ss_pred             CCCCC-CeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee----eeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEec
Q 019384           16 NPPSD-GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR----GEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFS   89 (342)
Q Consensus        16 ~~~~~-~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~----~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~   89 (342)
                      ..|.+ .|++++|+|++++||||+.|++|+|||+.++...    ...+|.+.|.+++|+|++. +++++.|+++++|+..
T Consensus        12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~   91 (345)
T 3fm0_A           12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN   91 (345)
T ss_dssp             CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred             cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEcc
Confidence            35766 8999999999999999999999999999876432    1247999999999997765 5699999999999998


Q ss_pred             cCc---eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcc-eeeeeecCCCCcEEE--EeccCCeEEEEE
Q 019384           90 HGK---EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQE-RTLVGTYPQPERVYS--LSLVGNRLVVAT  163 (342)
Q Consensus        90 ~~~---~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~-~~~~~~~~~~~~v~~--~s~~~~~~~~~s  163 (342)
                      ...   ...+.+|...|.+++|+|++++|++|+.|++|++||++...... ...+..  +...+.+  ++++++.+++++
T Consensus        92 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s~s  169 (345)
T 3fm0_A           92 QDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS--HTQDVKHVVWHPSQELLASAS  169 (345)
T ss_dssp             CC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC--CCSCEEEEEECSSSSCEEEEE
T ss_pred             CCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC--cCCCeEEEEECCCCCEEEEEe
Confidence            765   34578999999999999999999999999999999987543211 111222  3344544  455667899999


Q ss_pred             cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccccee-------eeEEec
Q 019384          164 AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAF-------KCHRKS  236 (342)
Q Consensus       164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~-------~~h~~~  236 (342)
                      .|++|++||++............+...+.+++++|+++.+++++.|+.+++  |+............       .+-...
T Consensus       170 ~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~i--W~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (345)
T 3fm0_A          170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRI--WRQYLPGNEQGVACSGSDPSWKCICTL  247 (345)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE--EEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEE--eccccCCCCccceeeccCCccceeEEe
Confidence            999999999876532111112233456889999999999999999998755  77532211111000       000000


Q ss_pred             CCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCce---------eeeccCCCCcceEEEEECCCCC-EEEEEEec
Q 019384          237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK---------RLYQYSKYPTSIAALSFSRDGR-LLAVASSY  306 (342)
Q Consensus       237 ~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~---------~~~~~~~~~~~V~~v~~spdg~-~las~s~~  306 (342)
                        ...+...|.+++|+|++..|++++.|++|++|+.+...         ....+.+|...|++++|+|++. +||+|+.+
T Consensus       248 --~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D  325 (345)
T 3fm0_A          248 --SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD  325 (345)
T ss_dssp             --CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT
T ss_pred             --cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCC
Confidence              01123468999999999999999999999999976432         1223468999999999999985 89988877


Q ss_pred             cccCCCCCCCCCcEEEEEcc
Q 019384          307 TFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~  326 (342)
                      .           .|.+|++.
T Consensus       326 g-----------~v~~W~~~  334 (345)
T 3fm0_A          326 G-----------EVAFWKYQ  334 (345)
T ss_dssp             S-----------CEEEEEEC
T ss_pred             C-----------cEEEEEec
Confidence            6           59999774

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.7e-40  Score=304.23  Aligned_cols=292  Identities=19%  Similarity=0.292  Sum_probs=226.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc-
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK-   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~-   92 (342)
                      .+|.+.|++++|+|++++|+||+.||+|+|||+.++.. .....|...|.+++|++++.. ++++.|+.+++|++.... 
T Consensus        63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~  142 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD  142 (380)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSS
T ss_pred             cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcc
Confidence            68999999999999999999999999999999987754 445579999999999977764 689999999999987532 


Q ss_pred             -------eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeee---cCCCCcEEEEec---cCCe
Q 019384           93 -------EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGT---YPQPERVYSLSL---VGNR  158 (342)
Q Consensus        93 -------~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~---~~~~~~v~~~s~---~~~~  158 (342)
                             ...+.+|...|.+++|.|++ ..|+||+.|++|++||++++...  ..+..   ..+...+.++++   +++.
T Consensus       143 ~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~  220 (380)
T 3iz6_a          143 RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI--SIFGSEFPSGHTADVLSLSINSLNANM  220 (380)
T ss_dssp             CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE--EEECCCSSSSCCSCEEEEEECSSSCCE
T ss_pred             ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE--EEeecccCCCCccCeEEEEeecCCCCE
Confidence                   23567999999999999974 57999999999999999864321  11211   124455666665   4578


Q ss_pred             EEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384          159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA  238 (342)
Q Consensus       159 ~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~  238 (342)
                      +++++.|++|++||++......... ..+...+.+++++|++..+++++.|+.++  +||.+.......+  ..+...  
T Consensus       221 l~sgs~D~~v~~wd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~--lwd~~~~~~~~~~--~~~~~~--  293 (380)
T 3iz6_a          221 FISGSCDTTVRLWDLRITSRAVRTY-HGHEGDINSVKFFPDGQRFGTGSDDGTCR--LFDMRTGHQLQVY--NREPDR--  293 (380)
T ss_dssp             EEEEETTSCEEEEETTTTCCCCEEE-CCCSSCCCEEEECTTSSEEEEECSSSCEE--EEETTTTEEEEEE--CCCCSS--
T ss_pred             EEEEECCCeEEEEECCCCCcceEEE-CCcCCCeEEEEEecCCCeEEEEcCCCeEE--EEECCCCcEEEEe--cccccc--
Confidence            9999999999999998543322221 23445688999999999999999999875  5998754332221  111110  


Q ss_pred             CCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeecc----CCCCcceEEEEECCCCCEEEEEEeccccCCCCC
Q 019384          239 GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQY----SKYPTSIAALSFSRDGRLLAVASSYTFEEGDKP  314 (342)
Q Consensus       239 ~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~----~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~  314 (342)
                      .......|.+++|+|+|++|++|+.||.|++||..+++.+..+    .+|...|.+++|+|||++|++|+.+.       
T Consensus       294 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~-------  366 (380)
T 3iz6_a          294 NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK-------  366 (380)
T ss_dssp             SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS-------
T ss_pred             cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC-------
Confidence            0111224889999999999999999999999999887776555    67999999999999999999998776       


Q ss_pred             CCCCcEEEEEccC
Q 019384          315 HEPDAIFVRSVNE  327 (342)
Q Consensus       315 ~~~~~~~~~~~~~  327 (342)
                          .|.+|+++.
T Consensus       367 ----~i~iW~~~~  375 (380)
T 3iz6_a          367 ----NLKIWAFSG  375 (380)
T ss_dssp             ----CEEEEECCS
T ss_pred             ----CEEEEecCC
Confidence                588998753

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.5e-39  Score=311.93  Aligned_cols=289  Identities=18%  Similarity=0.231  Sum_probs=218.5

Q ss_pred             CCCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc
Q 019384           16 NPPSDGISNLRFSNHSD-HLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~-~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~   92 (342)
                      ..|...|++++|+|++. +|+||+.|++|+|||...+++.. ..+|.+.|.+++|+|++.+ ++++.|++|++|+..+++
T Consensus       144 ~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~  223 (611)
T 1nr0_A          144 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT  223 (611)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc
Confidence            57899999999999987 59999999999999998776544 4579999999999987764 699999999999988776


Q ss_pred             ee-ec-c------cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCccee--------------------------
Q 019384           93 ED-IL-G------KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERT--------------------------  138 (342)
Q Consensus        93 ~~-~~-~------~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~--------------------------  138 (342)
                      .. .+ .      +|...|.+++|+|++++|+|++.|++|++||++++......                          
T Consensus       224 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d  303 (611)
T 1nr0_A          224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN  303 (611)
T ss_dssp             EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred             EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC
Confidence            42 33 2      79999999999999999999999999999998754211000                          


Q ss_pred             ------------eee-ecCCCCcEEEE--eccCCeEEEEEcCCeEEEEeCCCCCCcccccc-------------------
Q 019384          139 ------------LVG-TYPQPERVYSL--SLVGNRLVVATAGRHVNVYDLRNMSQPEQRRE-------------------  184 (342)
Q Consensus       139 ------------~~~-~~~~~~~v~~~--s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~-------------------  184 (342)
                                  ... ...+...+.++  +++++.+++++.|++|++||+.++........                   
T Consensus       304 ~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s  383 (611)
T 1nr0_A          304 GFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT  383 (611)
T ss_dssp             CCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE
T ss_pred             CcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEE
Confidence                        000 01233345444  45667999999999999999876432100000                   


Q ss_pred             -------------------------------------------------------------cccceeeEEEEEeeCCceE
Q 019384          185 -------------------------------------------------------------SSLKYQTRCVRCYPNGTGY  203 (342)
Q Consensus       185 -------------------------------------------------------------~~~~~~~~~v~~~~~~~~~  203 (342)
                                                                                   ..+...+.+++++|+++.+
T Consensus       384 ~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~l  463 (611)
T 1nr0_A          384 VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFV  463 (611)
T ss_dssp             EETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEE
T ss_pred             EEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEE
Confidence                                                                         0001224678899999999


Q ss_pred             EEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC-ceeeec--
Q 019384          204 ALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN-KKRLYQ--  280 (342)
Q Consensus       204 ~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~-~~~~~~--  280 (342)
                      ++++.|+.+.  +||........ .....|.         ..|++|+|+|+|++|++++.|++|++||+.+ ++.+..  
T Consensus       464 asgs~D~~v~--lwd~~~~~~~~-~~~~~h~---------~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~  531 (611)
T 1nr0_A          464 AVGGQDSKVH--VYKLSGASVSE-VKTIVHP---------AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS  531 (611)
T ss_dssp             EEEETTSEEE--EEEEETTEEEE-EEEEECS---------SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred             EEeCCCCeEE--EEEccCCceee-eeccCCC---------CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee
Confidence            9999999765  58875421111 1112232         3699999999999999999999999999987 565543  


Q ss_pred             cCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          281 YSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       281 ~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      +..|...|++++|||||++||+++.+.           .|.+|+++.
T Consensus       532 ~~~H~~~V~~v~fspdg~~lasgs~D~-----------~v~lW~~~~  567 (611)
T 1nr0_A          532 WTFHTAKVACVSWSPDNVRLATGSLDN-----------SVIVWNMNK  567 (611)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETTS-----------CEEEEETTC
T ss_pred             eeecccceeEEEECCCCCEEEEEECCC-----------cEEEEECCC
Confidence            345999999999999999999999776           588887764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.8e-38  Score=282.55  Aligned_cols=289  Identities=18%  Similarity=0.242  Sum_probs=222.9

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCc-
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK-   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~-   92 (342)
                      .+|.+.|++++|+|++++|++++.||+|+|||+.+++... ...|...|.+++|++++. +++++.|+.|++|++.+++ 
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~   99 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC   99 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE
Confidence            6899999999999999999999999999999998776544 457999999999997765 5689999999999998877 


Q ss_pred             eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384           93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD  172 (342)
Q Consensus        93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd  172 (342)
                      ...+.+|...|.+++|+|++++|++|+.|++|++||+++...  ...+..+......+.++.+++.+++++.|+.|++||
T Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  177 (312)
T 4ery_A          100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  177 (312)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE--EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence            456788999999999999999999999999999999975432  122222222223334455667899999999999999


Q ss_pred             CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384          173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH  252 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  252 (342)
                      +++...... ........+.+++++|+++.+++++.++.+  ++||.......  ..+..|...      ...+......
T Consensus       178 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i--~iwd~~~~~~~--~~~~~~~~~------~~~~~~~~~~  246 (312)
T 4ery_A          178 TASGQCLKT-LIDDDNPPVSFVKFSPNGKYILAATLDNTL--KLWDYSKGKCL--KTYTGHKNE------KYCIFANFSV  246 (312)
T ss_dssp             TTTCCEEEE-ECCSSCCCEEEEEECTTSSEEEEEETTTEE--EEEETTTTEEE--EEECSSCCS------SSCCCEEEEC
T ss_pred             CCCCceeeE-EeccCCCceEEEEECCCCCEEEEEcCCCeE--EEEECCCCcEE--EEEEecCCc------eEEEEEEEEe
Confidence            987643222 112223457789999999999999999976  45998654322  222333221      0112333344


Q ss_pred             CCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384          253 PIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       253 p~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                      +++.+|++|+.||+|++||+++++.+..+.+|...|.+++|+|++.+|++++...  ++       .|.+|+.+
T Consensus       247 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~--d~-------~i~~W~~d  311 (312)
T 4ery_A          247 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN--DK-------TIKLWKSD  311 (312)
T ss_dssp             SSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTT--TC-------CEEEEECC
T ss_pred             CCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccC--Cc-------cEEEecCC
Confidence            6788999999999999999999999999999999999999999999999987421  12       48888753

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.2e-39  Score=313.64  Aligned_cols=286  Identities=17%  Similarity=0.215  Sum_probs=219.0

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee--------ecCCceEEEEEeCCCC-eEEEecCCcEEEE
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF--------MHGGPVLDCCFHDDSS-GFSASADHTVRRL   86 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~--------~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w   86 (342)
                      .+|.+.|++++|+|++++||||+.|++|+|||+.+++....+        +|.+.|.+++|+|++. +++++.|++|++|
T Consensus       187 ~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lW  266 (611)
T 1nr0_A          187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW  266 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            579999999999999999999999999999999877655444        6999999999998776 5699999999999


Q ss_pred             EeccCce--------------------------------------------eecccCCcceeEEEEeCCCCEEEEeeCCC
Q 019384           87 VFSHGKE--------------------------------------------DILGKHDAPVRCIEYSYAAGQVITGSWDK  122 (342)
Q Consensus        87 ~~~~~~~--------------------------------------------~~~~~h~~~V~~~~~~~~~~~l~sgs~D~  122 (342)
                      |+.+++.                                            ..+.+|...|++++|+|++++|++++.|+
T Consensus       267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~  346 (611)
T 1nr0_A          267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG  346 (611)
T ss_dssp             ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence            9876542                                            12357999999999999999999999999


Q ss_pred             cEEEEcCCCCCCccee---------eee----------------------------------------------------
Q 019384          123 SLKCWDPRGASGQERT---------LVG----------------------------------------------------  141 (342)
Q Consensus       123 ~I~iWd~~~~~~~~~~---------~~~----------------------------------------------------  141 (342)
                      +|++||++++......         .+.                                                    
T Consensus       347 ~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~  426 (611)
T 1nr0_A          347 HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA  426 (611)
T ss_dssp             CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE
T ss_pred             cEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEE
Confidence            9999998753210000         000                                                    


Q ss_pred             -------------------ecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce
Q 019384          142 -------------------TYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG  202 (342)
Q Consensus       142 -------------------~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  202 (342)
                                         .+......+++++++..+++++.|++|++||+.......... ..+...+.+++|+|+++.
T Consensus       427 ~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~  505 (611)
T 1nr0_A          427 VAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAF  505 (611)
T ss_dssp             EEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSE
T ss_pred             EEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCE
Confidence                               000011223455667799999999999999997642211111 233456889999999999


Q ss_pred             EEEEccCCeEEEEEeechhhhhcccc-eeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCce-ee-e
Q 019384          203 YALSSVEGRVAMEFFDLSEASQAKKY-AFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK-RL-Y  279 (342)
Q Consensus       203 ~~~~s~~~~~~i~~~d~~~~~~~~~~-~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~-~~-~  279 (342)
                      +++++.|+.+.  +||.......... ....|.         ..|.+|+|+|++++|++|+.|++|+|||++++. .+ .
T Consensus       506 las~s~d~~v~--~w~~~~~~~~~~~~~~~~H~---------~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~  574 (611)
T 1nr0_A          506 LVATDQSRKVI--PYSVANNFELAHTNSWTFHT---------AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII  574 (611)
T ss_dssp             EEEEETTSCEE--EEEGGGTTEESCCCCCCCCS---------SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred             EEEEcCCCCEE--EEEcCCCCceeeeeeeeecc---------cceeEEEECCCCCEEEEEECCCcEEEEECCCcccccch
Confidence            99999999875  5888642221111 112233         369999999999999999999999999998754 33 5


Q ss_pred             ccCCC-CcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEc
Q 019384          280 QYSKY-PTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSV  325 (342)
Q Consensus       280 ~~~~~-~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~  325 (342)
                      .+.+| ...|++++|+||++ |++++.+.           .|.+|++
T Consensus       575 ~~~~h~~~~v~~v~fs~d~~-l~s~~~D~-----------~i~lW~~  609 (611)
T 1nr0_A          575 IKGAHAMSSVNSVIWLNETT-IVSAGQDS-----------NIKFWNV  609 (611)
T ss_dssp             ETTSSTTSCEEEEEEEETTE-EEEEETTS-----------CEEEEEC
T ss_pred             hhccCcccCeeEEEEcCCCE-EEEecCCC-----------CEEEEec
Confidence            67789 89999999999999 89888766           5888875

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.8e-38  Score=286.77  Aligned_cols=282  Identities=17%  Similarity=0.190  Sum_probs=212.1

Q ss_pred             CCCCCCeEEEEE-----cC-CCCeEEEEeCCCcEEEEECCCce--------eeeeeecCCceEEEEEeCCCC-eEEEecC
Q 019384           16 NPPSDGISNLRF-----SN-HSDHLLVSSWDKSVRLYDASANV--------LRGEFMHGGPVLDCCFHDDSS-GFSASAD   80 (342)
Q Consensus        16 ~~~~~~V~~l~f-----s~-~~~~l~s~s~Dgti~vwd~~~~~--------~~~~~~h~~~V~~~~~~~~~~-~~s~s~D   80 (342)
                      .+|.+.|++++|     ++ ++++|+||+.|++|+|||+..+.        .....+|.+.|.+++|++++. +++++.|
T Consensus        18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D   97 (343)
T 2xzm_R           18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD   97 (343)
T ss_dssp             ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETT
T ss_pred             ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCC
Confidence            579999999999     76 89999999999999999986431        233457999999999997766 4699999


Q ss_pred             CcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC---
Q 019384           81 HTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG---  156 (342)
Q Consensus        81 ~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~---  156 (342)
                      ++|++||+.+++. ..+.+|...|.+++|+|++++|++++.|++|++||+.....  ........+...+.++.+.+   
T Consensus        98 ~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~  175 (343)
T 2xzm_R           98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK--FSSAEKENHSDWVSCVRYSPIMK  175 (343)
T ss_dssp             SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE--EECCTTTSCSSCEEEEEECCCCC
T ss_pred             CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce--eeeecccCCCceeeeeeeccccc
Confidence            9999999988774 46789999999999999999999999999999999863211  11111112333455554433   


Q ss_pred             ---------CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccc
Q 019384          157 ---------NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK  227 (342)
Q Consensus       157 ---------~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~  227 (342)
                               ..+++++.|++|++||....  . ......+...+.+++++|+++.+++++.|+.+.  +||+....... 
T Consensus       176 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~-~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~--iwd~~~~~~~~-  249 (343)
T 2xzm_R          176 SANKVQPFAPYFASVGWDGRLKVWNTNFQ--I-RYTFKAHESNVNHLSISPNGKYIATGGKDKKLL--IWDILNLTYPQ-  249 (343)
T ss_dssp             SCSCCCSSCCEEEEEETTSEEEEEETTTE--E-EEEEECCSSCEEEEEECTTSSEEEEEETTCEEE--EEESSCCSSCS-
T ss_pred             cccccCCCCCEEEEEcCCCEEEEEcCCCc--e-eEEEcCccccceEEEECCCCCEEEEEcCCCeEE--EEECCCCcccc-
Confidence                     47899999999999995321  1 111123345688999999999999999999764  59974321111 


Q ss_pred             ceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeee--ccC-----------CCCcceEEEEEC
Q 019384          228 YAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLY--QYS-----------KYPTSIAALSFS  294 (342)
Q Consensus       228 ~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~--~~~-----------~~~~~V~~v~~s  294 (342)
                      ..+. +         ...|.+++|+|++.+|++| .|+.|++||+.+++...  .+.           +|...|.+++|+
T Consensus       250 ~~~~-~---------~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  318 (343)
T 2xzm_R          250 REFD-A---------GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN  318 (343)
T ss_dssp             EEEE-C---------SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred             eeec-C---------CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence            1111 1         1258999999999877655 58899999988755432  332           688899999999


Q ss_pred             CCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          295 RDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       295 pdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      |||++|++|+.++           .|.+|+++.
T Consensus       319 p~g~~l~sg~~Dg-----------~v~~w~~~~  340 (343)
T 2xzm_R          319 ALGKKLFAGFTDG-----------VIRTFSFET  340 (343)
T ss_dssp             SSSCCEEEEETTS-----------EEEEEEEEE
T ss_pred             CCCCeEEEecCCc-----------eEEEEEEEc
Confidence            9999999998776           588887753

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.6e-38  Score=282.04  Aligned_cols=278  Identities=21%  Similarity=0.273  Sum_probs=215.6

Q ss_pred             CCCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEECCCc------eeeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEE
Q 019384           16 NPPSDGISNLRFSNHS-DHLLVSSWDKSVRLYDASAN------VLRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLV   87 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~-~~l~s~s~Dgti~vwd~~~~------~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~   87 (342)
                      .+|.+.|++|+|+|++ ++|+|||.|++|++||+...      .+....+|.+.|.+++|++++. +++++.|++|++||
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd   93 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD   93 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            6899999999999965 89999999999999998532      1334568999999999997765 56999999999999


Q ss_pred             eccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC--------Ce
Q 019384           88 FSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG--------NR  158 (342)
Q Consensus        88 ~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~--------~~  158 (342)
                      +.+++. ..+.+|...|.+++|+|++..|++|+.|++|++||++..   ....+.  .+...+..+.+.+        ..
T Consensus        94 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~---~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~  168 (319)
T 3frx_A           94 VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ---CLATLL--GHNDWVSQVRVVPNEKADDDSVT  168 (319)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC---EEEEEC--CCSSCEEEEEECCC------CCE
T ss_pred             CCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEe--ccCCcEEEEEEccCCCCCCCccE
Confidence            998874 567899999999999999999999999999999998632   112222  2334454454432        37


Q ss_pred             EEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384          159 LVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA  238 (342)
Q Consensus       159 ~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~  238 (342)
                      +++++.|++|++||+++......  ...+...+.+++++|+++.+++++.|+.+.  +||.......  ..+..+     
T Consensus       169 l~s~~~d~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~--iwd~~~~~~~--~~~~~~-----  237 (319)
T 3frx_A          169 IISAGNDKMVKAWNLNQFQIEAD--FIGHNSNINTLTASPDGTLIASAGKDGEIM--LWNLAAKKAM--YTLSAQ-----  237 (319)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEE--ECCCCSCEEEEEECTTSSEEEEEETTCEEE--EEETTTTEEE--EEEECC-----
T ss_pred             EEEEeCCCEEEEEECCcchhhee--ecCCCCcEEEEEEcCCCCEEEEEeCCCeEE--EEECCCCcEE--EEecCC-----
Confidence            89999999999999987532211  123345688999999999999999999764  5998654322  222221     


Q ss_pred             CCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC--------CCCcceEEEEECCCCCEEEEEEeccccC
Q 019384          239 GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS--------KYPTSIAALSFSRDGRLLAVASSYTFEE  310 (342)
Q Consensus       239 ~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~--------~~~~~V~~v~~spdg~~las~s~~~~~~  310 (342)
                           .+|.+++|+|++.+|++++.+ .+++|+.+....+..+.        .|...+.+++|||||++|++|+.+.   
T Consensus       238 -----~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg---  308 (319)
T 3frx_A          238 -----DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN---  308 (319)
T ss_dssp             -----SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS---
T ss_pred             -----CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCc---
Confidence                 258999999999999888754 69999998776554432        2456789999999999999998776   


Q ss_pred             CCCCCCCCcEEEEEcc
Q 019384          311 GDKPHEPDAIFVRSVN  326 (342)
Q Consensus       311 ~~~~~~~~~~~~~~~~  326 (342)
                              .|.+|++.
T Consensus       309 --------~i~vWd~~  316 (319)
T 3frx_A          309 --------VIRVWQVM  316 (319)
T ss_dssp             --------CEEEEEEE
T ss_pred             --------eEEEEEEe
Confidence                    58888764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.3e-38  Score=290.40  Aligned_cols=285  Identities=18%  Similarity=0.242  Sum_probs=219.1

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee-ec------------------CCceEEEEEeCCCC-eEE
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF-MH------------------GGPVLDCCFHDDSS-GFS   76 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~-~h------------------~~~V~~~~~~~~~~-~~s   76 (342)
                      .|...|++++|+|||++||+|+ |++++||++.++.....+ .|                  ...|.+++|++++. +++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            4889999999999999999876 789999999887654433 22                  22489999997765 568


Q ss_pred             EecCCcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec-
Q 019384           77 ASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL-  154 (342)
Q Consensus        77 ~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~-  154 (342)
                      ++.|++|++||+.+++. ..+.+|...|.+++|+|++++|++++.|++|++||++++..  ...+. .........++. 
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~-~~~~v~~~~~~~~  217 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC--SLTLS-IEDGVTTVAVSPG  217 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--EEEEE-CSSCEEEEEECST
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee--EEEEE-cCCCcEEEEEECC
Confidence            99999999999988774 46789999999999999999999999999999999976432  11121 222223334444 


Q ss_pred             cCCeEEEEEcCCeEEEEeCCCCCCccccc-----ccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcc---
Q 019384          155 VGNRLVVATAGRHVNVYDLRNMSQPEQRR-----ESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAK---  226 (342)
Q Consensus       155 ~~~~~~~~s~d~~v~iwd~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~---  226 (342)
                      +++.+++++.|+.|++||++++.......     ...+...+.+++++|+++.+++++.|+.+.  +||+.......   
T Consensus       218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~--~wd~~~~~~~~~~~  295 (393)
T 1erj_A          218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK--LWNLQNANNKSDSK  295 (393)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE--EEEC----------
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEE--EEECCCCCCccccc
Confidence            56789999999999999998764321110     012344688999999999999999999865  58876432111   


Q ss_pred             -------cceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECC----
Q 019384          227 -------KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSR----  295 (342)
Q Consensus       227 -------~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~sp----  295 (342)
                             ...+.+|.         ..|.+++|+|++.+|++|+.|++|++||.++++.+..+.+|...|.+++|+|    
T Consensus       296 ~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~  366 (393)
T 1erj_A          296 TPNSGTCEVTYIGHK---------DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL  366 (393)
T ss_dssp             -----CEEEEEECCS---------SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred             CCCCCcceEEEeccc---------CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCc
Confidence                   11222232         3589999999999999999999999999999999999999999999999986    


Q ss_pred             --CCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          296 --DGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       296 --dg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                        ++.+||+|+.+.           .|.+|++..
T Consensus       367 ~p~~~~l~sgs~Dg-----------~i~iW~~~~  389 (393)
T 1erj_A          367 GPEYNVFATGSGDC-----------KARIWKYKK  389 (393)
T ss_dssp             CTTCEEEEEEETTS-----------EEEEEEEEE
T ss_pred             CCCCCEEEEECCCC-----------cEEECcccc
Confidence              788999999877           689998753

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-38  Score=281.42  Aligned_cols=291  Identities=14%  Similarity=0.128  Sum_probs=203.8

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc--eeeeee--e-cCCceEEEEEeCCCC-eEEEecCCcEEEEEec
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN--VLRGEF--M-HGGPVLDCCFHDDSS-GFSASADHTVRRLVFS   89 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~--~~~~~~--~-h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~   89 (342)
                      ..|.+.|++++|+++  +||||+.|++|+|||+..+  .+...+  . |.+.|.+++|+|++. +++++.|++|++|++.
T Consensus        11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~   88 (330)
T 2hes_X           11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE   88 (330)
T ss_dssp             ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred             ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence            579999999999987  9999999999999999764  333332  3 999999999998776 4689999999999985


Q ss_pred             cCc--------eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCC--cceeeeeecCCCCcEEEEe--ccCC
Q 019384           90 HGK--------EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASG--QERTLVGTYPQPERVYSLS--LVGN  157 (342)
Q Consensus        90 ~~~--------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~--~~~~~~~~~~~~~~v~~~s--~~~~  157 (342)
                      ...        ...+.+|...|.+++|+|++++|+||+.|++|++||++....  .....+..  +...+.++.  ++++
T Consensus        89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~  166 (330)
T 2hes_X           89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE--HSQDVKHVIWHPSEA  166 (330)
T ss_dssp             ------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC--CSSCEEEEEECSSSS
T ss_pred             cCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc--CCCceEEEEECCCCC
Confidence            321        235678999999999999999999999999999999853221  11112222  334455544  4567


Q ss_pred             eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeC--CceEEEEccCCeEEEEEeechhhhhcccceeeeEEe
Q 019384          158 RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN--GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK  235 (342)
Q Consensus       158 ~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~  235 (342)
                      .+++++.|++|++||+++...........+...+.+++++|+  +..+++++.|+.+++  ||.................
T Consensus       167 ~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~i--w~~~~~~~~~~~~~~~~~~  244 (330)
T 2hes_X          167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV--WKYMGDDEDDQQEWVCEAI  244 (330)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEE--EEEEEECTTSCEEEEEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEE--EEecCCCccccceeEEeee
Confidence            899999999999999875421111111233456788999998  667899999998754  8875431111000000000


Q ss_pred             cCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCce--ee-eccCCCCc-ceEEEEECC--CCCEEEEEEecccc
Q 019384          236 SEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK--RL-YQYSKYPT-SIAALSFSR--DGRLLAVASSYTFE  309 (342)
Q Consensus       236 ~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~--~~-~~~~~~~~-~V~~v~~sp--dg~~las~s~~~~~  309 (342)
                      .  ...+..+|.+++|+++ .+|++|+.||+|+|||..++.  .+ ..+.+|.. .|++++|+|  |+++||+|+.+.  
T Consensus       245 ~--~~~h~~~v~~v~~s~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg--  319 (330)
T 2hes_X          245 L--PDVHKRQVYNVAWGFN-GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG--  319 (330)
T ss_dssp             C--CSCCSSCEEEEEECTT-SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS--
T ss_pred             c--ccccccceEEEEEcCC-CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC--
Confidence            0  0112346999999975 489999999999999988763  33 23467887 899999999  799999999876  


Q ss_pred             CCCCCCCCCcEEEEEcc
Q 019384          310 EGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       310 ~~~~~~~~~~~~~~~~~  326 (342)
                               .|.+|+++
T Consensus       320 ---------~v~~W~~~  327 (330)
T 2hes_X          320 ---------IVNFWSLE  327 (330)
T ss_dssp             ---------EEEEEEC-
T ss_pred             ---------cEEEEEec
Confidence                     58889875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.5e-37  Score=297.31  Aligned_cols=271  Identities=23%  Similarity=0.278  Sum_probs=218.6

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCcee
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKED   94 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~~   94 (342)
                      ..|...|++++|+|++++|++++.|++|++||.....+.....|...|.+++|++++.. ++++.|+.+++|+.......
T Consensus       300 ~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~  379 (577)
T 2ymu_A          300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ  379 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEE
T ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEE
Confidence            57889999999999999999999999999999988777777889999999999987765 68899999999997655456


Q ss_pred             ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCC
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLR  174 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~  174 (342)
                      .+.+|...|.+++|+|++++|++++.|++|++||...   .....+..+......+.+++++..+++++.|++|++||+.
T Consensus       380 ~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~---~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~  456 (577)
T 2ymu_A          380 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN  456 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC---CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence            7788999999999999999999999999999999642   1122233333232334455566789999999999999974


Q ss_pred             CCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC
Q 019384          175 NMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI  254 (342)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~  254 (342)
                      .. .. . ........+.+++++|+++.+++++.|+.+.  +||...   .....+.+|..         +|++++|+|+
T Consensus       457 ~~-~~-~-~~~~~~~~v~~~~~spd~~~las~~~d~~i~--iw~~~~---~~~~~~~~h~~---------~v~~l~~s~d  519 (577)
T 2ymu_A          457 GQ-LL-Q-TLTGHSSSVRGVAFSPDGQTIASASDDKTVK--LWNRNG---QLLQTLTGHSS---------SVRGVAFSPD  519 (577)
T ss_dssp             SC-EE-E-EEECCSSCEEEEEECTTSCEEEEEETTSEEE--EEETTS---CEEEEEECCSS---------CEEEEEECTT
T ss_pred             CC-EE-E-EEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE--EEcCCC---CEEEEEeCCCC---------CEEEEEEcCC
Confidence            32 11 1 1123345678999999999999999999765  588531   22233444432         6999999999


Q ss_pred             CCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          255 YGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       255 ~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      +++|++++.||+|+|||. +++++..+.+|...|++++|+|||++|++++.+.
T Consensus       520 g~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~  571 (577)
T 2ymu_A          520 GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDK  571 (577)
T ss_dssp             SSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             CCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            999999999999999996 5678888999999999999999999999998766

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.1e-36  Score=269.53  Aligned_cols=252  Identities=17%  Similarity=0.235  Sum_probs=186.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc--e-eeeeeecCCceEEEEEeC---CCCeEEEecCCcEEEEEec
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN--V-LRGEFMHGGPVLDCCFHD---DSSGFSASADHTVRRLVFS   89 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~--~-~~~~~~h~~~V~~~~~~~---~~~~~s~s~D~~i~~w~~~   89 (342)
                      .+|.+.|++++|+|+|++||||+.|++|+|||+..+  + +....+|.++|.+++|++   +..+++++.|++|++|++.
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~   85 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE   85 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence            579999999999999999999999999999999643  3 345568999999999974   3456799999999999998


Q ss_pred             cCc---eeecccCCcceeEEEEeCC--CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC--------
Q 019384           90 HGK---EDILGKHDAPVRCIEYSYA--AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG--------  156 (342)
Q Consensus        90 ~~~---~~~~~~h~~~V~~~~~~~~--~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~--------  156 (342)
                      ++.   ...+.+|...|.+++|+|+  +..|++++.|++|++||++.........+.  .+...+.++++.+        
T Consensus        86 ~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~~~~  163 (297)
T 2pm7_B           86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID--AHAIGVNSASWAPATIEEDGE  163 (297)
T ss_dssp             SSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE--CCSSCEEEEEECCCC------
T ss_pred             CCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee--cccCccceEeecCCccccccc
Confidence            764   2346789999999999997  789999999999999998754221112222  2334455555543        


Q ss_pred             -------CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccce
Q 019384          157 -------NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA  229 (342)
Q Consensus       157 -------~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~  229 (342)
                             ..+++++.|++|++||+++....                                            ......
T Consensus       164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~--------------------------------------------~~~~~~  199 (297)
T 2pm7_B          164 HNGTKESRKFVTGGADNLVKIWKYNSDAQT--------------------------------------------YVLEST  199 (297)
T ss_dssp             ------CCEEEEEETTSCEEEEEEETTTTE--------------------------------------------EEEEEE
T ss_pred             CCCCCCcceEEEEcCCCcEEEEEEcCCCce--------------------------------------------EEEEEE
Confidence                   35666666666777766442100                                            000011


Q ss_pred             eeeEEecCCCCceeeeeeEEEEcCCC---CeEEEecCCCeEEEEeCCCce---eeecc--CCCCcceEEEEECCCCCEEE
Q 019384          230 FKCHRKSEAGRDIVYPVNAIAFHPIY---GTFATGGCDGFVNVWDGNNKK---RLYQY--SKYPTSIAALSFSRDGRLLA  301 (342)
Q Consensus       230 ~~~h~~~~~~~~~~~~v~~v~~sp~~---~~l~sgs~Dg~I~iWd~~~~~---~~~~~--~~~~~~V~~v~~spdg~~la  301 (342)
                      +.+|.         .+|.+|+|+|++   .+|++|+.|++|+|||.++..   ....+  .+|...|++++|+|||++||
T Consensus       200 l~~H~---------~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~la  270 (297)
T 2pm7_B          200 LEGHS---------DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA  270 (297)
T ss_dssp             ECCCS---------SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred             ecCCC---------CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEE
Confidence            23333         269999999984   789999999999999987632   11222  57888999999999999999


Q ss_pred             EEEeccccCCCCCCCCCcEEEEEcc-CCccccC
Q 019384          302 VASSYTFEEGDKPHEPDAIFVRSVN-EIEVKPK  333 (342)
Q Consensus       302 s~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  333 (342)
                      +++.+.           .|.+|+.. ++.+++.
T Consensus       271 s~~~D~-----------~v~lw~~~~~g~w~~~  292 (297)
T 2pm7_B          271 LSGGDN-----------KVTLWKENLEGKWEPA  292 (297)
T ss_dssp             EEETTS-----------CEEEEEECTTSCEEEC
T ss_pred             EEcCCC-----------cEEEEEECCCCcEEec
Confidence            998766           58899876 4555543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.7e-36  Score=267.17  Aligned_cols=282  Identities=21%  Similarity=0.281  Sum_probs=214.1

Q ss_pred             CCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCCce------eeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEE
Q 019384           16 NPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASANV------LRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLV   87 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~~------~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~   87 (342)
                      .+|.+.|++|+|+|+ +++|||||.|++|+|||+....      .....+|.+.|.+++|++++. +++++.|+.+++|+
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~  114 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD  114 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence            579999999999997 6899999999999999986532      234457999999999997766 56999999999999


Q ss_pred             eccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEE--EEeccC--CeEEEE
Q 019384           88 FSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVY--SLSLVG--NRLVVA  162 (342)
Q Consensus        88 ~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~--~~s~~~--~~~~~~  162 (342)
                      ...... .....+...+..+.+++++..|++++.|+.+++||+.....   .......+...+.  .++.++  ..++++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~s~  191 (340)
T 4aow_A          115 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK---YTVQDESHSEWVSCVRFSPNSSNPIIVSC  191 (340)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE---EEECSSSCSSCEEEEEECSCSSSCEEEEE
T ss_pred             ecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce---EEEEeccccCcccceEEccCCCCcEEEEE
Confidence            887764 34566778889999999999999999999999999864321   1111122233343  444443  357889


Q ss_pred             EcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCce
Q 019384          163 TAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDI  242 (342)
Q Consensus       163 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~  242 (342)
                      +.|+.|++||+++......  .......+.+++++|+++.+++++.|+.+.  +||.......  ..+..+         
T Consensus       192 ~~d~~i~i~d~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~--iwd~~~~~~~--~~~~~~---------  256 (340)
T 4aow_A          192 GWDKLVKVWNLANCKLKTN--HIGHTGYLNTVTVSPDGSLCASGGKDGQAM--LWDLNEGKHL--YTLDGG---------  256 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTCEEE--EEETTTTEEE--EEEECS---------
T ss_pred             cCCCEEEEEECCCCceeeE--ecCCCCcEEEEEECCCCCEEEEEeCCCeEE--EEEeccCcee--eeecCC---------
Confidence            9999999999987643221  123345688999999999999999999764  5998654322  122211         


Q ss_pred             eeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeecc---------CCCCcceEEEEECCCCCEEEEEEeccccCCCC
Q 019384          243 VYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQY---------SKYPTSIAALSFSRDGRLLAVASSYTFEEGDK  313 (342)
Q Consensus       243 ~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~---------~~~~~~V~~v~~spdg~~las~s~~~~~~~~~  313 (342)
                       ..|.+++|+|++. +++++.|++|++||++++..+..+         .+|...|++++|+|||++|++|+.+.      
T Consensus       257 -~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg------  328 (340)
T 4aow_A          257 -DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN------  328 (340)
T ss_dssp             -SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS------
T ss_pred             -ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC------
Confidence             2588999999765 556667999999999887655443         46888999999999999999998776      


Q ss_pred             CCCCCcEEEEEccCC
Q 019384          314 PHEPDAIFVRSVNEI  328 (342)
Q Consensus       314 ~~~~~~~~~~~~~~~  328 (342)
                           .|.+|+++.+
T Consensus       329 -----~v~iW~~~tG  338 (340)
T 4aow_A          329 -----LVRVWQVTIG  338 (340)
T ss_dssp             -----CEEEEEEEC-
T ss_pred             -----EEEEEeCCCc
Confidence                 5999988654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.2e-36  Score=271.59  Aligned_cols=293  Identities=17%  Similarity=0.240  Sum_probs=220.0

Q ss_pred             cCCCCCCCCeEEEEEcCCCCeEE-EEeC---CCcEEEEECCCceee--eeeecCCceEEEEEeCC----CCeEEEecCCc
Q 019384           13 ELGNPPSDGISNLRFSNHSDHLL-VSSW---DKSVRLYDASANVLR--GEFMHGGPVLDCCFHDD----SSGFSASADHT   82 (342)
Q Consensus        13 ~~~~~~~~~V~~l~fs~~~~~l~-s~s~---Dgti~vwd~~~~~~~--~~~~h~~~V~~~~~~~~----~~~~s~s~D~~   82 (342)
                      .+...|.+.|++++|+|++..++ +++.   |++|+|||+.++...  ....|.+.|.+++|+++    ..+++++.|+.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            34456999999999999997655 5655   999999999887643  34579999999999876    56789999999


Q ss_pred             EEEEEeccCc--eeecccCCcceeEEEE------eCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCC--CCcEEEE
Q 019384           83 VRRLVFSHGK--EDILGKHDAPVRCIEY------SYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ--PERVYSL  152 (342)
Q Consensus        83 i~~w~~~~~~--~~~~~~h~~~V~~~~~------~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~v~~~  152 (342)
                      |++|++.+++  ...+.+|...|.+++|      +|+++.|++++.|++|++||+++..... ..+..+..  ...+.++
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~v~~~  170 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPV-ANMEPVQGENKRDCWTV  170 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCS-EEECCCTTSCCCCEEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcc-eeccccCCCCCCceEEE
Confidence            9999998776  4467889999999965      6788999999999999999998654221 22222221  2245554


Q ss_pred             e------ccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEee---CCceEEEEccCCeEEEEEeechhhh
Q 019384          153 S------LVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYP---NGTGYALSSVEGRVAMEFFDLSEAS  223 (342)
Q Consensus       153 s------~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~s~~~~~~i~~~d~~~~~  223 (342)
                      .      .+++.+++++.|+.|++||+++....   ........+.+++++|   ++..+++++.++.+.  +||.+...
T Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~--i~d~~~~~  245 (357)
T 3i2n_A          171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR---WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH--VFDMRTQH  245 (357)
T ss_dssp             EEECCCC-CCCEEEEEETTSEEEEEETTTTEEE---EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEE--EEEEEEEE
T ss_pred             EEEeccCCCCCEEEEEccCCeEEEEECccCcee---eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEE--EEeCcCCC
Confidence            4      46678999999999999999886432   1123345688999999   899999999999764  58886543


Q ss_pred             hcccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCCc-------------------eeeeccCC
Q 019384          224 QAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNNK-------------------KRLYQYSK  283 (342)
Q Consensus       224 ~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~~-------------------~~~~~~~~  283 (342)
                      ....+......      .+..+|.+++|+|++. +|++|+.||.|++||++++                   +.+..+.+
T Consensus       246 ~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  319 (357)
T 3i2n_A          246 PTKGFASVSEK------AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL  319 (357)
T ss_dssp             TTTEEEEEEEE------CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred             cccceeeeccC------CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence            33222211000      1123699999999998 8999999999999998743                   35667888


Q ss_pred             CCcceEEEEECCCCCEEE-EEEeccccCCCCCCCCCcEEEEEccCC
Q 019384          284 YPTSIAALSFSRDGRLLA-VASSYTFEEGDKPHEPDAIFVRSVNEI  328 (342)
Q Consensus       284 ~~~~V~~v~~spdg~~la-s~s~~~~~~~~~~~~~~~~~~~~~~~~  328 (342)
                      |...|.+++|+|||++|+ +++.+.           .|.+|++...
T Consensus       320 ~~~~v~~~~~s~~~~~l~~s~~~d~-----------~i~iw~~~~~  354 (357)
T 3i2n_A          320 STQPISSLDWSPDKRGLCVCSSFDQ-----------TVRVLIVTKL  354 (357)
T ss_dssp             CSSCEEEEEECSSSTTEEEEEETTS-----------EEEEEEECC-
T ss_pred             CCCCeeEEEEcCCCCeEEEEecCCC-----------cEEEEECCCc
Confidence            999999999999999998 566555           5888987643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-35  Score=266.76  Aligned_cols=296  Identities=16%  Similarity=0.149  Sum_probs=230.8

Q ss_pred             CCCCCCccCC----CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeCCCC-eEEEec
Q 019384            6 PPPTSGRELG----NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHDDSS-GFSASA   79 (342)
Q Consensus         6 ~~~~~~~~~~----~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~~~~-~~s~s~   79 (342)
                      +++..|..+.    .+|.+.|++++|+|++++|++++.||+|+|||+.+++.... ..|.+.|.+++|++++. +++++.
T Consensus        15 ~~~~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   94 (369)
T 3zwl_B           15 NLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA   94 (369)
T ss_dssp             CCCSSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeC
Confidence            4444555444    48899999999999999999999999999999988765544 46999999999997665 568999


Q ss_pred             CCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCC-----CcEEEEcCCCCCCcce---------eeeeecCC
Q 019384           80 DHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWD-----KSLKCWDPRGASGQER---------TLVGTYPQ  145 (342)
Q Consensus        80 D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D-----~~I~iWd~~~~~~~~~---------~~~~~~~~  145 (342)
                      |+.|++|++.+++......|...|.+++|+|++..|++++.+     +.|++||++.......         ..+..+..
T Consensus        95 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (369)
T 3zwl_B           95 DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG  174 (369)
T ss_dssp             TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred             CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence            999999999988755444488999999999999999999999     9999999865432110         11111112


Q ss_pred             --CCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhh
Q 019384          146 --PERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAS  223 (342)
Q Consensus       146 --~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~  223 (342)
                        ......++.+++.+++++.|+.|++||+++........ ......+.+++++|++..+++++.++.+  ++||.....
T Consensus       175 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i--~v~d~~~~~  251 (369)
T 3zwl_B          175 LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI-DLHEKSISDMQFSPDLTYFITSSRDTNS--FLVDVSTLQ  251 (369)
T ss_dssp             CCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEE--EEEETTTCC
T ss_pred             ccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEE-ecCCCceeEEEECCCCCEEEEecCCceE--EEEECCCCc
Confidence              22233455567789999999999999998732222222 1234467899999999999999999976  569986533


Q ss_pred             hcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCC--------------eEEEEeCCCceeeeccCCCCcceE
Q 019384          224 QAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDG--------------FVNVWDGNNKKRLYQYSKYPTSIA  289 (342)
Q Consensus       224 ~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg--------------~I~iWd~~~~~~~~~~~~~~~~V~  289 (342)
                      ....+  . +         ..++.+++|+|+++++++++.++              .+++||..+++.+..+.+|...|.
T Consensus       252 ~~~~~--~-~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~  319 (369)
T 3zwl_B          252 VLKKY--E-T---------DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLN  319 (369)
T ss_dssp             EEEEE--E-C---------SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             eeeee--c-C---------CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEE
Confidence            22221  1 1         12588999999999999999988              899999999999999999999999


Q ss_pred             EEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          290 ALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       290 ~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      +++|+|||++|++++.++           .|.+|+++.
T Consensus       320 ~~~~s~~~~~l~s~~~dg-----------~v~iw~~~~  346 (369)
T 3zwl_B          320 TVAISPQGTSYASGGEDG-----------FIRLHHFEK  346 (369)
T ss_dssp             EEEECTTSSEEEEEETTS-----------EEEEEEECH
T ss_pred             EEEECCCCCEEEEEcCCC-----------eEEEEECcc
Confidence            999999999999998776           588998864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.8e-36  Score=276.11  Aligned_cols=281  Identities=8%  Similarity=0.042  Sum_probs=202.6

Q ss_pred             CeEEEEEcCCCCeEEEEeCCC-------cEEEEECCCce------e-----eeeeecCCceEEEEEeCCCCeE-------
Q 019384           21 GISNLRFSNHSDHLLVSSWDK-------SVRLYDASANV------L-----RGEFMHGGPVLDCCFHDDSSGF-------   75 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~Dg-------ti~vwd~~~~~------~-----~~~~~h~~~V~~~~~~~~~~~~-------   75 (342)
                      .|++++|+||+++|++||.|.       +|+||++....      +     ..+..|.+.|.++.+..+ .++       
T Consensus        16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~-~~~~g~~~~~   94 (365)
T 4h5i_A           16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG-IILVGCNENS   94 (365)
T ss_dssp             CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT-EEEEECCCCH
T ss_pred             CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC-EEEEEECCCc
Confidence            599999999999999998754       59999986432      1     112357778888887533 223       


Q ss_pred             ----EEecCCcEEEEEeccCcee----------ecccCCcceeEEEEeCCCCEEE--EeeCCCcEEEEcCCCCCCcceee
Q 019384           76 ----SASADHTVRRLVFSHGKED----------ILGKHDAPVRCIEYSYAAGQVI--TGSWDKSLKCWDPRGASGQERTL  139 (342)
Q Consensus        76 ----s~s~D~~i~~w~~~~~~~~----------~~~~h~~~V~~~~~~~~~~~l~--sgs~D~~I~iWd~~~~~~~~~~~  139 (342)
                          +++.|+.+|+|++......          ....+...+++++|+|||++++  +++.|++|+|||+++...  ...
T Consensus        95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~--~~~  172 (365)
T 4h5i_A           95 TKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE--KFE  172 (365)
T ss_dssp             HHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE--EEE
T ss_pred             cEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE--EEE
Confidence                3456788999998765421          1124556799999999999875  566899999999976432  122


Q ss_pred             eeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCe--EEEEEe
Q 019384          140 VGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR--VAMEFF  217 (342)
Q Consensus       140 ~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~--~~i~~~  217 (342)
                      +. +......+++++++..+++++. +.+++|+..++..............+.+++|+|+++.+++++.++.  +.++.|
T Consensus       173 ~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~  250 (365)
T 4h5i_A          173 IE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI  250 (365)
T ss_dssp             EE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred             eC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence            22 3333444556666778887774 5577777766544333223334556889999999999999887764  456678


Q ss_pred             echhhhhcc--cceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeec-cCCCCcceEEEEEC
Q 019384          218 DLSEASQAK--KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQ-YSKYPTSIAALSFS  294 (342)
Q Consensus       218 d~~~~~~~~--~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~-~~~~~~~V~~v~~s  294 (342)
                      +........  ...+..|         ..+|++++|+|+|++||+|+.|++|+|||+++++++.+ +.+|...|++|+||
T Consensus       251 ~~~~~~~~~~~~~~~~~~---------~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fS  321 (365)
T 4h5i_A          251 SIKSGNTSVLRSKQVTNR---------FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTIS  321 (365)
T ss_dssp             EEETTEEEEEEEEEEESS---------CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEEC
T ss_pred             ccccceecceeeeeecCC---------CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEEC
Confidence            764332111  1122222         23699999999999999999999999999999998877 57899999999999


Q ss_pred             CCCCEEEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384          295 RDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       295 pdg~~las~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                      |||++||+||.+.           .|.||++.
T Consensus       322 pdg~~laS~S~D~-----------tvrvw~ip  342 (365)
T 4h5i_A          322 PDSTYVASVSAAN-----------TIHIIKLP  342 (365)
T ss_dssp             TTSCEEEEEETTS-----------EEEEEECC
T ss_pred             CCCCEEEEEeCCC-----------eEEEEEcC
Confidence            9999999999877           68899873

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.1e-35  Score=283.89  Aligned_cols=271  Identities=22%  Similarity=0.277  Sum_probs=218.4

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCcee
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKED   94 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~   94 (342)
                      ..|...|++++|+|+++.|++++.|++|++||.....+....+|.+.|.+++|++++. +++++.|+++++|+.......
T Consensus       259 ~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~  338 (577)
T 2ymu_A          259 TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ  338 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE
T ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE
Confidence            5688999999999999999999999999999987766666678999999999998765 568999999999998877777


Q ss_pred             ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCC
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLR  174 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~  174 (342)
                      .+.+|...|.+++|+|+++.|++++.|++|++||...   .....+..+......+.++.+++.+++++.|+.|++||..
T Consensus       339 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~---~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~  415 (577)
T 2ymu_A          339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  415 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC---CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence            7889999999999999999999999999999999642   1122233333333334555667789999999999999964


Q ss_pred             CCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC
Q 019384          175 NMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI  254 (342)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~  254 (342)
                      . +.. .. .......+.+++++|+++.+++++.|+.+.  +||...   .....+..|.         .+|.+++|+|+
T Consensus       416 ~-~~~-~~-~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~--~w~~~~---~~~~~~~~~~---------~~v~~~~~spd  478 (577)
T 2ymu_A          416 G-QLL-QT-LTGHSSSVWGVAFSPDDQTIASASDDKTVK--LWNRNG---QLLQTLTGHS---------SSVRGVAFSPD  478 (577)
T ss_dssp             C-CEE-EE-EECCSSCEEEEEECTTSSEEEEEETTSEEE--EEETTS---CEEEEEECCS---------SCEEEEEECTT
T ss_pred             C-CEE-EE-ecCCCCCeEEEEECCCCCEEEEEcCCCEEE--EEECCC---CEEEEEcCCC---------CCEEEEEEcCC
Confidence            3 221 11 123344678899999999999999999764  588632   1222333343         26999999999


Q ss_pred             CCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          255 YGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       255 ~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      +++|++++.|++|++||. +++.+..+.+|...|++++|||||++||+++.+.
T Consensus       479 ~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg  530 (577)
T 2ymu_A          479 GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK  530 (577)
T ss_dssp             SCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             CCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcC
Confidence            999999999999999995 5678888999999999999999999999998754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.1e-35  Score=292.82  Aligned_cols=281  Identities=20%  Similarity=0.257  Sum_probs=215.8

Q ss_pred             CCCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEECCCce------eeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEE
Q 019384           16 NPPSDGISNLRFSNHS-DHLLVSSWDKSVRLYDASANV------LRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLV   87 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~-~~l~s~s~Dgti~vwd~~~~~------~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~   87 (342)
                      ..|.+.|++|+|++++ ++|+|||.|++|+|||+....      .....+|.+.|.+++|++++. +++++.|++|++||
T Consensus       379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd  458 (694)
T 3dm0_A          379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD  458 (694)
T ss_dssp             ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            5899999999999864 789999999999999986531      234568999999999997766 56999999999999


Q ss_pred             eccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeee-ecCCCCcEEEEeccC----CeEEE
Q 019384           88 FSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVG-TYPQPERVYSLSLVG----NRLVV  161 (342)
Q Consensus        88 ~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~~~~v~~~s~~~----~~~~~  161 (342)
                      +.++. ...+.+|...|.+++|+|++++|+||+.|++|++||+.....  ..... ...+...+.++.+++    ..+++
T Consensus       459 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  536 (694)
T 3dm0_A          459 LAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK--YTISEGGEGHRDWVSCVRFSPNTLQPTIVS  536 (694)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE--EEECSSTTSCSSCEEEEEECSCSSSCEEEE
T ss_pred             CCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc--eeeccCCCCCCCcEEEEEEeCCCCcceEEE
Confidence            98876 356789999999999999999999999999999999753211  11111 112334455555543    36899


Q ss_pred             EEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCc
Q 019384          162 ATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRD  241 (342)
Q Consensus       162 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~  241 (342)
                      ++.|++|++||+++......  ...+...+.+++++|++..+++++.|+.+.  +||+.......  .+..         
T Consensus       537 ~s~d~~v~vwd~~~~~~~~~--~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~--iwd~~~~~~~~--~~~~---------  601 (694)
T 3dm0_A          537 ASWDKTVKVWNLSNCKLRST--LAGHTGYVSTVAVSPDGSLCASGGKDGVVL--LWDLAEGKKLY--SLEA---------  601 (694)
T ss_dssp             EETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSBCE--EEETTTTEEEE--CCBC---------
T ss_pred             EeCCCeEEEEECCCCcEEEE--EcCCCCCEEEEEEeCCCCEEEEEeCCCeEE--EEECCCCceEE--EecC---------
Confidence            99999999999987643221  223445688999999999999999999875  59986543221  1111         


Q ss_pred             eeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCC-------------------CcceEEEEECCCCCEEEE
Q 019384          242 IVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKY-------------------PTSIAALSFSRDGRLLAV  302 (342)
Q Consensus       242 ~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-------------------~~~V~~v~~spdg~~las  302 (342)
                       ...|.+++|+|++.+|++++ |+.|+|||+++++.+..+..+                   ...|.+++|||||++|++
T Consensus       602 -~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~s  679 (694)
T 3dm0_A          602 -NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS  679 (694)
T ss_dssp             -SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEE
T ss_pred             -CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEE
Confidence             12588999999988887765 567999999988877655422                   124789999999999999


Q ss_pred             EEeccccCCCCCCCCCcEEEEEcc
Q 019384          303 ASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       303 ~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                      |+.++           .|.+|++.
T Consensus       680 gs~Dg-----------~i~iW~i~  692 (694)
T 3dm0_A          680 GYTDG-----------VIRVWGIG  692 (694)
T ss_dssp             EETTS-----------EEEEEEC-
T ss_pred             EcCCC-----------eEEEEecc
Confidence            99877           68889875

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.3e-35  Score=269.75  Aligned_cols=288  Identities=15%  Similarity=0.149  Sum_probs=215.9

Q ss_pred             CCCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEECCCceeeeee---ecCCceEEEEEeC-C-CCeEEEecCCcEEEEEec
Q 019384           16 NPPSDGISNLRFSNHS-DHLLVSSWDKSVRLYDASANVLRGEF---MHGGPVLDCCFHD-D-SSGFSASADHTVRRLVFS   89 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~-~~l~s~s~Dgti~vwd~~~~~~~~~~---~h~~~V~~~~~~~-~-~~~~s~s~D~~i~~w~~~   89 (342)
                      .+|...|++++|+|++ ++|++|+.||+|+|||+.++......   +|.+.|.+++|++ + ..+++++.|+.|++|++.
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS  149 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence            5789999999999999 99999999999999999876544433   5999999999997 4 356799999999999998


Q ss_pred             cCceeecc---cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCC-eEEEEE
Q 019384           90 HGKEDILG---KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGN-RLVVAT  163 (342)
Q Consensus        90 ~~~~~~~~---~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~-~~~~~s  163 (342)
                      ......+.   .|...|.+++|+|+++.|++|+.|++|++||++.   .....+..  +...+.++.+  ++. .+++++
T Consensus       150 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~  224 (383)
T 3ei3_B          150 GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG---HEIFKEKL--HKAKVTHAEFNPRCDWLMATSS  224 (383)
T ss_dssp             SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS---CEEEEEEC--SSSCEEEEEECSSCTTEEEEEE
T ss_pred             CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC---CEEEEecc--CCCcEEEEEECCCCCCEEEEEe
Confidence            75554443   4558899999999999999999999999999842   12222333  3344555555  455 799999


Q ss_pred             cCCeEEEEeCCCCCCcc-cccccccceeeEEEEEee-CCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCC--
Q 019384          164 AGRHVNVYDLRNMSQPE-QRRESSLKYQTRCVRCYP-NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAG--  239 (342)
Q Consensus       164 ~d~~v~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~-~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~--  239 (342)
                      .|+.|++||+++..... ..........+.+++++| ++..+++++.|+.+  ++||++.....  ..+..|......  
T Consensus       225 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i--~iwd~~~~~~~--~~~~~~~~~~~~~~  300 (383)
T 3ei3_B          225 VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEI--RVYSSYDWSKP--DQIIIHPHRQFQHL  300 (383)
T ss_dssp             TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEE--EEEETTBTTSC--SEEEECCBCCCTTS
T ss_pred             CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcE--EEEECCCCccc--cccccccccccccc
Confidence            99999999998743211 111112345688999999 99999999999876  56998654332  223333221100  


Q ss_pred             Cc------eeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCC--CCcceEEEEECCCCCEEEEEEeccccCC
Q 019384          240 RD------IVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSK--YPTSIAALSFSRDGRLLAVASSYTFEEG  311 (342)
Q Consensus       240 ~~------~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~--~~~~V~~v~~spdg~~las~s~~~~~~~  311 (342)
                      ..      ..+.+..++|+|++++  +|+.|++|++||+.+++.+..+.+  |...+.+++|+|||++|++++ ++    
T Consensus       301 ~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~----  373 (383)
T 3ei3_B          301 TPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF----  373 (383)
T ss_dssp             CCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT----
T ss_pred             cceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC----
Confidence            00      0123455788888877  889999999999999998888876  457788889999999999996 43    


Q ss_pred             CCCCCCCcEEEEEcc
Q 019384          312 DKPHEPDAIFVRSVN  326 (342)
Q Consensus       312 ~~~~~~~~~~~~~~~  326 (342)
                             .|.+|+++
T Consensus       374 -------~i~iw~~~  381 (383)
T 3ei3_B          374 -------NILIWNRE  381 (383)
T ss_dssp             -------EEEEEECC
T ss_pred             -------cEEEEecC
Confidence                   48999875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.5e-35  Score=271.64  Aligned_cols=296  Identities=13%  Similarity=0.133  Sum_probs=222.6

Q ss_pred             CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-------eeeeeecCCceEEEEEeCC----C----CeEEEe
Q 019384           14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-------LRGEFMHGGPVLDCCFHDD----S----SGFSAS   78 (342)
Q Consensus        14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-------~~~~~~h~~~V~~~~~~~~----~----~~~s~s   78 (342)
                      ....|.+.|++++|+|  ++|++|+.||+|+|||+.++.       ......|...|.+++|+++    +    .+++++
T Consensus        11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~   88 (397)
T 1sq9_A           11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   88 (397)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence            3468999999999998  899999999999999998765       5566689999999999976    5    567999


Q ss_pred             cCCcEEEEEeccCc------eeecccC-----CcceeEEEEe----CCCCE-EEEeeCCCcEEEEcCCC------CCCcc
Q 019384           79 ADHTVRRLVFSHGK------EDILGKH-----DAPVRCIEYS----YAAGQ-VITGSWDKSLKCWDPRG------ASGQE  136 (342)
Q Consensus        79 ~D~~i~~w~~~~~~------~~~~~~h-----~~~V~~~~~~----~~~~~-l~sgs~D~~I~iWd~~~------~~~~~  136 (342)
                      .|+.|++|++.++.      ...+..|     ...|.+++|+    |+++. |++++.|+.|++||+++      .....
T Consensus        89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  168 (397)
T 1sq9_A           89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  168 (397)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee
Confidence            99999999998877      4566778     5899999999    99999 99999999999999875      32211


Q ss_pred             ee---eeee-------cCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccc-ccc---ceeeEEEEEeeCCce
Q 019384          137 RT---LVGT-------YPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRE-SSL---KYQTRCVRCYPNGTG  202 (342)
Q Consensus       137 ~~---~~~~-------~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~-~~~---~~~~~~v~~~~~~~~  202 (342)
                      ..   .+..       +......+.++.++ .+++++.|+.|++||+++.+....... ...   ...+.+++++|++..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~  247 (397)
T 1sq9_A          169 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL  247 (397)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred             ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCE
Confidence            00   1211       22333444555566 899999999999999987533221111 002   456889999999999


Q ss_pred             EEEEccC---CeEEEEEeechhhhhcccceeeeEE--e--cCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCc
Q 019384          203 YALSSVE---GRVAMEFFDLSEASQAKKYAFKCHR--K--SEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNK  275 (342)
Q Consensus       203 ~~~~s~~---~~~~i~~~d~~~~~~~~~~~~~~h~--~--~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~  275 (342)
                      +++++.+   +.+  ++||.......  ..+....  .  ......+..+|.+++|+|++++|++|+.||.|++||++++
T Consensus       248 l~~~~~d~~~g~i--~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          248 LAIAHDSNSFGCI--TLYETEFGERI--GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             EEEEEEETTEEEE--EEEETTTCCEE--EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             EEEEecCCCCceE--EEEECCCCccc--ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999887   654  56998654322  2222200  0  0000002236999999999999999999999999999999


Q ss_pred             eeeeccC------CC---------------CcceEEEEECCCC----------CEEEEEEeccccCCCCCCCCCcEEEEE
Q 019384          276 KRLYQYS------KY---------------PTSIAALSFSRDG----------RLLAVASSYTFEEGDKPHEPDAIFVRS  324 (342)
Q Consensus       276 ~~~~~~~------~~---------------~~~V~~v~~spdg----------~~las~s~~~~~~~~~~~~~~~~~~~~  324 (342)
                      +.+..+.      +|               ...|.+++|+|||          ++|++++.++           .|.+|+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg-----------~i~iw~  392 (397)
T 1sq9_A          324 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR-----------SIRWFR  392 (397)
T ss_dssp             EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT-----------EEEEEE
T ss_pred             ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC-----------cEEEEE
Confidence            9888888      77               8999999999999          7999998776           588888


Q ss_pred             ccC
Q 019384          325 VNE  327 (342)
Q Consensus       325 ~~~  327 (342)
                      +..
T Consensus       393 ~~~  395 (397)
T 1sq9_A          393 EAG  395 (397)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            753

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.9e-35  Score=259.85  Aligned_cols=276  Identities=17%  Similarity=0.204  Sum_probs=217.0

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee----eee--eecCCceEEEEEeCCCC-eEEEecCCcEEEEEe
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL----RGE--FMHGGPVLDCCFHDDSS-GFSASADHTVRRLVF   88 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~----~~~--~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~   88 (342)
                      ..|.+.|++++|+|++++|++++ ||+|+|||+.++..    ...  ..|.+.|.+++|++++. +++++.|+.+++|++
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~  126 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence            36889999999999999999998 99999999976431    111  26899999999997776 568899999999999


Q ss_pred             ccCc---eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE--eccCCeEEEEE
Q 019384           89 SHGK---EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL--SLVGNRLVVAT  163 (342)
Q Consensus        89 ~~~~---~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~--s~~~~~~~~~s  163 (342)
                      .+++   ...+..|...|.+++|+|+++.|++++.|+.|++||+++...  ...+..  +...+.++  +.+++.+++++
T Consensus       127 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~--~~~~~~--~~~~i~~~~~~~~~~~l~~~~  202 (337)
T 1gxr_A          127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL--VRQFQG--HTDGASCIDISNDGTKLWTGG  202 (337)
T ss_dssp             CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECC--CSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce--eeeeec--ccCceEEEEECCCCCEEEEEe
Confidence            8876   235678999999999999999999999999999999975422  122222  33345444  44667899999


Q ss_pred             cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384          164 AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV  243 (342)
Q Consensus       164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~  243 (342)
                      .|+.|++||+++.+....   ......+.+++++|+++.+++++.++.+.  +||.....   ...+..|.         
T Consensus       203 ~dg~i~~~d~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~~~~i~--~~~~~~~~---~~~~~~~~---------  265 (337)
T 1gxr_A          203 LDNTVRSWDLREGRQLQQ---HDFTSQIFSLGYCPTGEWLAVGMESSNVE--VLHVNKPD---KYQLHLHE---------  265 (337)
T ss_dssp             TTSEEEEEETTTTEEEEE---EECSSCEEEEEECTTSSEEEEEETTSCEE--EEETTSSC---EEEECCCS---------
T ss_pred             cCCcEEEEECCCCceEee---ecCCCceEEEEECCCCCEEEEEcCCCcEE--EEECCCCC---eEEEcCCc---------
Confidence            999999999987643221   12334578899999999999999998764  58885432   12233332         


Q ss_pred             eeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEE
Q 019384          244 YPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVR  323 (342)
Q Consensus       244 ~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~  323 (342)
                      .+|.+++|+|++++|++++.||.|++||.++++.+... .|...|.+++|+||+++|++++.++           .|.+|
T Consensus       266 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg-----------~i~iw  333 (337)
T 1gxr_A          266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDK-----------KATVY  333 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTS-----------CEEEE
T ss_pred             cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCC-----------eEEEE
Confidence            36999999999999999999999999999988776443 4788999999999999999998765           47777


Q ss_pred             Ec
Q 019384          324 SV  325 (342)
Q Consensus       324 ~~  325 (342)
                      ++
T Consensus       334 ~~  335 (337)
T 1gxr_A          334 EV  335 (337)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-36  Score=276.42  Aligned_cols=287  Identities=14%  Similarity=0.159  Sum_probs=220.5

Q ss_pred             CCCCeEEEEEcCCCC-eEEEE----------eCCCcEEEEECCCce---eeeeeecCCceEEEEEeCCCC-eEEEecCCc
Q 019384           18 PSDGISNLRFSNHSD-HLLVS----------SWDKSVRLYDASANV---LRGEFMHGGPVLDCCFHDDSS-GFSASADHT   82 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~-~l~s~----------s~Dgti~vwd~~~~~---~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~   82 (342)
                      +...|.+++|+|+++ +|+++          +.|++|+|||+.++.   ......|.+.|.+++|++++. +++++.|+.
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS   90 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence            345789999999987 89999          899999999998764   455567999999999997665 568899999


Q ss_pred             EEEEEecc----C-ceeecccCCcceeEEEEeCC-CCEEEEeeCCCcEEEEcCCCCCC-----cceee--eeecCCCCcE
Q 019384           83 VRRLVFSH----G-KEDILGKHDAPVRCIEYSYA-AGQVITGSWDKSLKCWDPRGASG-----QERTL--VGTYPQPERV  149 (342)
Q Consensus        83 i~~w~~~~----~-~~~~~~~h~~~V~~~~~~~~-~~~l~sgs~D~~I~iWd~~~~~~-----~~~~~--~~~~~~~~~v  149 (342)
                      |++|++..    . ....+.+|...|.+++|+|+ +.+|++++.|++|++||+++...     .....  ...+......
T Consensus        91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  170 (416)
T 2pm9_A           91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS  170 (416)
T ss_dssp             EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred             EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence            99999987    2 24567889999999999998 78999999999999999986541     01111  1122223334


Q ss_pred             EEEecc-CCeEEEEEcCCeEEEEeCCCCCCccccccccc-----ceeeEEEEEeeCC-ceEEEEccCC---eEEEEEeec
Q 019384          150 YSLSLV-GNRLVVATAGRHVNVYDLRNMSQPEQRRESSL-----KYQTRCVRCYPNG-TGYALSSVEG---RVAMEFFDL  219 (342)
Q Consensus       150 ~~~s~~-~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~-~~~~~~s~~~---~~~i~~~d~  219 (342)
                      +.++.+ +..+++++.|+.|++||+++.+..... ....     ...+.+++++|++ ..+++++.++   .+  ++||.
T Consensus       171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i--~~~d~  247 (416)
T 2pm9_A          171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHL-SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI--LIWDL  247 (416)
T ss_dssp             EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEE-CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC--CEEET
T ss_pred             EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEE-eccccccccCCceEEEEECCCCCCEEEEEECCCCCceE--EEEeC
Confidence            445555 568899999999999999876432221 1111     4568899999997 5788888876   65  56998


Q ss_pred             hhhhhcccceee-eEEecCCCCceeeeeeEEEEcC-CCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCC
Q 019384          220 SEASQAKKYAFK-CHRKSEAGRDIVYPVNAIAFHP-IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDG  297 (342)
Q Consensus       220 ~~~~~~~~~~~~-~h~~~~~~~~~~~~v~~v~~sp-~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg  297 (342)
                      +.... ....+. .|.         ..|.+++|+| ++.+|++|+.||+|++||+++++.+..+.+|...|.+++|+||+
T Consensus       248 ~~~~~-~~~~~~~~~~---------~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~  317 (416)
T 2pm9_A          248 RNANT-PLQTLNQGHQ---------KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEA  317 (416)
T ss_dssp             TSTTS-CSBCCCSCCS---------SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTC
T ss_pred             CCCCC-CcEEeecCcc---------CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCC
Confidence            65322 122233 333         3699999999 89999999999999999999999999999999999999999999


Q ss_pred             -CEEEEEEeccccCCCCCCCCCcEEEEEccCC
Q 019384          298 -RLLAVASSYTFEEGDKPHEPDAIFVRSVNEI  328 (342)
Q Consensus       298 -~~las~s~~~~~~~~~~~~~~~~~~~~~~~~  328 (342)
                       ++|++++.+.           .|.+|++...
T Consensus       318 ~~~l~s~~~d~-----------~i~iw~~~~~  338 (416)
T 2pm9_A          318 PDLFACASFDN-----------KIEVQTLQNL  338 (416)
T ss_dssp             TTEEEECCSSS-----------EEEEEESCCC
T ss_pred             CCEEEEEecCC-----------cEEEEEccCC
Confidence             7999888765           4777877643

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=7.3e-36  Score=278.29  Aligned_cols=289  Identities=18%  Similarity=0.216  Sum_probs=205.0

Q ss_pred             CCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCce---eeeeeecCCceEEEEEeC-CC-CeEEEecCCcEEEEEec
Q 019384           16 NPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANV---LRGEFMHGGPVLDCCFHD-DS-SGFSASADHTVRRLVFS   89 (342)
Q Consensus        16 ~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~---~~~~~~h~~~V~~~~~~~-~~-~~~s~s~D~~i~~w~~~   89 (342)
                      .+|...|++|+|+| ++++||+|+.||+|+|||+.++.   .....+|.+.|++++|+| ++ .+++|+.|++|++||++
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~  195 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK  195 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence            46788999999999 56789999999999999997653   333457999999999985 44 56799999999999998


Q ss_pred             cCceeecc---cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc--CC-eEEEEE
Q 019384           90 HGKEDILG---KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV--GN-RLVVAT  163 (342)
Q Consensus        90 ~~~~~~~~---~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~--~~-~~~~~s  163 (342)
                      +.....+.   .+...+.+++|+|++.+|++|+.|++|++||++...   ...+..  +...+.++.++  ++ .+++++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~---~~~~~~--h~~~v~~v~~~p~~~~~~~s~s  270 (435)
T 4e54_B          196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE---LWNLRM--HKKKVTHVALNPCCDWFLATAS  270 (435)
T ss_dssp             SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB---CCCSBC--CSSCEEEEEECTTCSSEEEEEE
T ss_pred             CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce---eEEEec--ccceEEeeeecCCCceEEEEec
Confidence            76644433   234567899999999999999999999999986421   112222  34456666654  33 678899


Q ss_pred             cCCeEEEEeCCCCCCccccc-ccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCce
Q 019384          164 AGRHVNVYDLRNMSQPEQRR-ESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDI  242 (342)
Q Consensus       164 ~d~~v~iwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~  242 (342)
                      .|++|++||+++........ ...+...+.+++|+|++..+++++.|+.+.  +||.......  ..+..|.....  ..
T Consensus       271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~--iwd~~~~~~~--~~~~~~~~~~~--~~  344 (435)
T 4e54_B          271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIR--VYSASQWDCP--LGLIPHPHRHF--QH  344 (435)
T ss_dssp             TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEE--EEESSSSSSE--EEECCCCCCCC--SS
T ss_pred             CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEE--EEECCCCccc--eEEeccccccc--cc
Confidence            99999999998765432211 123345678999999999999999999875  5988643222  11222221100  00


Q ss_pred             eeeeeEEEEcCCCCeEEEec------------CCCeEEEEeCCCceeeeccC-CCCcceEEE-EECCCCCEEEEEEeccc
Q 019384          243 VYPVNAIAFHPIYGTFATGG------------CDGFVNVWDGNNKKRLYQYS-KYPTSIAAL-SFSRDGRLLAVASSYTF  308 (342)
Q Consensus       243 ~~~v~~v~~sp~~~~l~sgs------------~Dg~I~iWd~~~~~~~~~~~-~~~~~V~~v-~~spdg~~las~s~~~~  308 (342)
                      . .+..++|+|++..+++++            .+++|++||..+++.+..+. +|...|.++ +|||||++||+|+ ++ 
T Consensus       345 ~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~-  421 (435)
T 4e54_B          345 L-TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GY-  421 (435)
T ss_dssp             S-CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SS-
T ss_pred             c-eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CC-
Confidence            0 122334555555544442            45689999999998887654 688888887 6999999999875 33 


Q ss_pred             cCCCCCCCCCcEEEEEccCC
Q 019384          309 EEGDKPHEPDAIFVRSVNEI  328 (342)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~  328 (342)
                                .|.+|+++++
T Consensus       422 ----------~i~iW~~~~g  431 (435)
T 4e54_B          422 ----------HILIWSQQEA  431 (435)
T ss_dssp             ----------EEEECCCC--
T ss_pred             ----------cEEEEECCcC
Confidence                      4889988654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.5e-35  Score=266.40  Aligned_cols=241  Identities=18%  Similarity=0.183  Sum_probs=181.9

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-----eeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEecc
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-----GEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSH   90 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-----~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~   90 (342)
                      .+..+|++++|+|++ +|++|+.||+|+|||+.+++..     ...+|.+.|.+++|++++. +++++.|++|++||+.+
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            346789999999985 7889999999999999876422     2347999999999997765 56999999999999998


Q ss_pred             Cce-eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---CCeEEEEEcC
Q 019384           91 GKE-DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---GNRLVVATAG  165 (342)
Q Consensus        91 ~~~-~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~~~~~~~s~d  165 (342)
                      ++. ..+.+|...|++++|++++ ..|+||+.|++|++||++++...  ..+....+...+.++.+.   ++.+++++.|
T Consensus       159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d  236 (344)
T 4gqb_B          159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA--SQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN  236 (344)
T ss_dssp             TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE--EECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred             CcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccccee--eeeecceeeccceeeeecCCCCcceEEeccC
Confidence            874 5678999999999999987 47899999999999999865432  222222222334455543   3468889999


Q ss_pred             CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCc-eEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceee
Q 019384          166 RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGT-GYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVY  244 (342)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~  244 (342)
                      ++|++||+++++.....  ..+...+.+++|+|++. .+++++.|+.++  +||.....   ...+.+|.         .
T Consensus       237 g~v~~wd~~~~~~~~~~--~~h~~~v~~v~fsp~g~~~lasgs~D~~i~--vwd~~~~~---~~~~~~H~---------~  300 (344)
T 4gqb_B          237 GTVSLVDTKSTSCVLSS--AVHSQCVTGLVFSPHSVPFLASLSEDCSLA--VLDSSLSE---LFRSQAHR---------D  300 (344)
T ss_dssp             SEEEEEESCC--CCEEE--ECCSSCEEEEEECSSSSCCEEEEETTSCEE--EECTTCCE---EEEECCCS---------S
T ss_pred             CcEEEEECCCCcEEEEE--cCCCCCEEEEEEccCCCeEEEEEeCCCeEE--EEECCCCc---EEEEcCCC---------C
Confidence            99999999987543222  23345688999999984 688999999875  59985432   22334443         3


Q ss_pred             eeeEEEEcCCCC-eEEEecCCCeEEEEeCCCce
Q 019384          245 PVNAIAFHPIYG-TFATGGCDGFVNVWDGNNKK  276 (342)
Q Consensus       245 ~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~~~  276 (342)
                      .|++|+|+|+++ +|++|+.|++|++|++.+..
T Consensus       301 ~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          301 FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             CEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            699999999987 56799999999999988643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.6e-35  Score=267.67  Aligned_cols=293  Identities=15%  Similarity=0.178  Sum_probs=215.9

Q ss_pred             CCCCCc---cCCCCCCCCeEEEEEcCC----CCeEEEEeCCCcEEEEECCCceeeeee------ecCCceEEEEEeCCC-
Q 019384            7 PPTSGR---ELGNPPSDGISNLRFSNH----SDHLLVSSWDKSVRLYDASANVLRGEF------MHGGPVLDCCFHDDS-   72 (342)
Q Consensus         7 ~~~~~~---~~~~~~~~~V~~l~fs~~----~~~l~s~s~Dgti~vwd~~~~~~~~~~------~h~~~V~~~~~~~~~-   72 (342)
                      ||...+   .+.+.|...|++++|+|+    ...+++++.|+.|+|||+.++.....+      .|.+.|.+++|+++. 
T Consensus         3 ~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   82 (366)
T 3k26_A            3 CKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSN   82 (366)
T ss_dssp             --CCCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTT
T ss_pred             ceeEEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCC
Confidence            555555   456789999999999984    456777777889999999865433222      266889999998662 


Q ss_pred             ----CeEEEecCCcEEEEEeccCce-eecccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCCCCcceeeeee-cCC
Q 019384           73 ----SGFSASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERTLVGT-YPQ  145 (342)
Q Consensus        73 ----~~~s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~-~~~  145 (342)
                          .+++++.|+.|++|++.+++. ..+.+|...|.+++|+| ++..|++|+.|++|++||+++...  ...+.. ..+
T Consensus        83 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~  160 (366)
T 3k26_A           83 TSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL--VAIFGGVEGH  160 (366)
T ss_dssp             TCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE--EEEECSTTSC
T ss_pred             CCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE--EEEecccccc
Confidence                367999999999999988773 45778999999999999 889999999999999999975432  122211 123


Q ss_pred             CCcEEEEec--cCCeEEEEEcCCeEEEEeCCCCCCcccccc--------------------------cccceeeEEEEEe
Q 019384          146 PERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQPEQRRE--------------------------SSLKYQTRCVRCY  197 (342)
Q Consensus       146 ~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~--------------------------~~~~~~~~~v~~~  197 (342)
                      ...+.++.+  +++.+++++.|+.|++||+++.+.......                          ......+.+++++
T Consensus       161 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  240 (366)
T 3k26_A          161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL  240 (366)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred             cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence            445555554  567899999999999999986532111000                          0033456778777


Q ss_pred             eCCceEEEEccCCeEEEEEeechhhhhcc------------cceeeeEEecCCCCceeeeeeEEEEcCC--CCeEEEecC
Q 019384          198 PNGTGYALSSVEGRVAMEFFDLSEASQAK------------KYAFKCHRKSEAGRDIVYPVNAIAFHPI--YGTFATGGC  263 (342)
Q Consensus       198 ~~~~~~~~~s~~~~~~i~~~d~~~~~~~~------------~~~~~~h~~~~~~~~~~~~v~~v~~sp~--~~~l~sgs~  263 (342)
                        +..+++++.++.+.  +||........            ...+..         +..+|.+++|+|+  +++|++|+.
T Consensus       241 --~~~l~~~~~d~~i~--~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~~~l~~~~~  307 (366)
T 3k26_A          241 --GDLILSKSCENAIV--CWKPGKMEDDIDKIKPSESNVTILGRFDY---------SQCDIWYMRFSMDFWQKMLALGNQ  307 (366)
T ss_dssp             --TTEEEEECSSSEEE--EEEESSTTCCGGGCCTTCCCEEEEEEEEC---------SSCCSSCCCCEECTTSSEEEEECT
T ss_pred             --CCEEEEEecCCEEE--EEeCCCccccccccccCCcchheeccccc---------cCCcEEEEEEcCCCCCcEEEEEec
Confidence              67899999999764  58875432211            011111         1235889999999  999999999


Q ss_pred             CCeEEEEeCCCceee----eccCCC--CcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEc
Q 019384          264 DGFVNVWDGNNKKRL----YQYSKY--PTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSV  325 (342)
Q Consensus       264 Dg~I~iWd~~~~~~~----~~~~~~--~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~  325 (342)
                      ||.|++||+++++..    ..+.+|  ...|.+++|+|||++|++++.++           .|.+|++
T Consensus       308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----------~i~iwd~  364 (366)
T 3k26_A          308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA-----------SIWRWDR  364 (366)
T ss_dssp             TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS-----------EEEEEEC
T ss_pred             CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCC-----------EEEEEEe
Confidence            999999999986533    366777  78999999999999999998776           5888876

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.9e-35  Score=273.05  Aligned_cols=285  Identities=13%  Similarity=0.168  Sum_probs=204.5

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce------------eeeeeecC------------CceEEEEEeCCC
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV------------LRGEFMHG------------GPVLDCCFHDDS   72 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~------------~~~~~~h~------------~~V~~~~~~~~~   72 (342)
                      .+.+.|++++|+|++++||+|+.||+|+|||+.++.            .....+|.            +.|.+++|++++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            457899999999999999999999999999997654            33445787            889999999764


Q ss_pred             ---CeEEEecCCcEEEEEeccCce-----------------------------------------eecccCCcceeEEEE
Q 019384           73 ---SGFSASADHTVRRLVFSHGKE-----------------------------------------DILGKHDAPVRCIEY  108 (342)
Q Consensus        73 ---~~~s~s~D~~i~~w~~~~~~~-----------------------------------------~~~~~h~~~V~~~~~  108 (342)
                         .+++++.|++|++|++..+..                                         ....+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence               568999999999999876432                                         113679999999999


Q ss_pred             eCCCCEEEEeeCCCcEEEEcCCCCCCcceeee-----eecCCCCcEEEEec--cC-CeEEEEEcCCeEEEEeCCCCCCc-
Q 019384          109 SYAAGQVITGSWDKSLKCWDPRGASGQERTLV-----GTYPQPERVYSLSL--VG-NRLVVATAGRHVNVYDLRNMSQP-  179 (342)
Q Consensus       109 ~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~-----~~~~~~~~v~~~s~--~~-~~~~~~s~d~~v~iwd~~~~~~~-  179 (342)
                      +|+++.|++| .|++|++||++..... ...+     ....+...+.++.+  ++ +.+++++.|+.|++||+++.... 
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRS-FNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEE-EEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCce-eeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            9999999998 7999999998732211 1111     01123344555555  44 68999999999999999986531 


Q ss_pred             --ccccccccc-----------eeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCC------C
Q 019384          180 --EQRRESSLK-----------YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAG------R  240 (342)
Q Consensus       180 --~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~------~  240 (342)
                        ......+..           ..+.+++++|+++.+++++. +.+  ++||.+... .....+..|......      .
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v--~iwd~~~~~-~~~~~~~~~~~~~~~l~~~~~~  339 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSV--KVWDLNMEN-RPVETYQVHEYLRSKLCSLYEN  339 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEE--EEEETTCCS-SCSCCEESCGGGTTTHHHHHHT
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeE--EEEeCCCCc-cccceeeccccccccccccccc
Confidence              111111111           16789999999999998887 765  569986421 122334444321100      0


Q ss_pred             ceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeec--------------------------------cCCCCcce
Q 019384          241 DIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQ--------------------------------YSKYPTSI  288 (342)
Q Consensus       241 ~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~--------------------------------~~~~~~~V  288 (342)
                      .....+..++|+|++++|++|+.||.|++||+++++.+..                                ...+...|
T Consensus       340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  419 (447)
T 3dw8_B          340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKI  419 (447)
T ss_dssp             SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCC
T ss_pred             cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCce
Confidence            0011133499999999999999999999999988765420                                11345678


Q ss_pred             EEEEECCCCCEEEEEEecc
Q 019384          289 AALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       289 ~~v~~spdg~~las~s~~~  307 (342)
                      .+++|+|+|.+||+++.+.
T Consensus       420 ~~~~~~p~~~~la~~~~~~  438 (447)
T 3dw8_B          420 LHTAWHPKENIIAVATTNN  438 (447)
T ss_dssp             CEEEECSSSSEEEEECSSC
T ss_pred             eEEEECCCCCEEEEEecce
Confidence            9999999999999998755

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-34  Score=253.74  Aligned_cols=279  Identities=17%  Similarity=0.251  Sum_probs=215.8

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCc-
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK-   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~-   92 (342)
                      ..|.+.|++++| +++++|++++.||+|+|||+.++... ....|.+.|.+++|++++. +++++.|+.+++|++.... 
T Consensus        15 ~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~   93 (313)
T 3odt_A           15 KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG   93 (313)
T ss_dssp             CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT
T ss_pred             hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC
Confidence            789999999999 99999999999999999999877644 4457899999999997765 5689999999999987653 


Q ss_pred             ---eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEe--c-cCCeEEEEEcCC
Q 019384           93 ---EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLS--L-VGNRLVVATAGR  166 (342)
Q Consensus        93 ---~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s--~-~~~~~~~~s~d~  166 (342)
                         ...+.+|...|.+++|  +++.|++++.|++|++||..  .  ....+..  +...+.++.  . +++.+++++.|+
T Consensus        94 ~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~--~--~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~  165 (313)
T 3odt_A           94 EDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG--S--LVYNLQA--HNASVWDAKVVSFSENKFLTASADK  165 (313)
T ss_dssp             SCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT--E--EEEEEEC--CSSCEEEEEEEETTTTEEEEEETTS
T ss_pred             CCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC--c--EEEeccc--CCCceeEEEEccCCCCEEEEEECCC
Confidence               3456789999999999  46799999999999999932  1  1122222  333344433  3 678999999999


Q ss_pred             eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384          167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV  246 (342)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v  246 (342)
                      .|++||....   ...........+.+++++|++. +++++.++.+  ++||.+....  ...+..|.         .+|
T Consensus       166 ~i~i~d~~~~---~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i--~i~d~~~~~~--~~~~~~~~---------~~i  228 (313)
T 3odt_A          166 TIKLWQNDKV---IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLI--KLVDMHTGDV--LRTYEGHE---------SFV  228 (313)
T ss_dssp             CEEEEETTEE---EEEECSSCSSCEEEEEEEETTE-EEEEETTSEE--EEEETTTCCE--EEEEECCS---------SCE
T ss_pred             CEEEEecCce---EEEEeccCcccEEEEEEcCCCe-EEEccCCCeE--EEEECCchhh--hhhhhcCC---------ceE
Confidence            9999995432   2222222445688999999988 8889999876  5699864322  22333333         369


Q ss_pred             eEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384          247 NAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       247 ~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                      .+++|+|++ .|++|+.||.|++||+++++.+..+..|...|.+++|+|||+++ +++.++           .|.+|+++
T Consensus       229 ~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~dg-----------~i~iw~~~  295 (313)
T 3odt_A          229 YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDII-VGSSDN-----------LVRIFSQE  295 (313)
T ss_dssp             EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEE-EEETTS-----------CEEEEESC
T ss_pred             EEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEE-EEeCCC-----------cEEEEeCC
Confidence            999999998 69999999999999999999998999999999999999999954 566554           59999887


Q ss_pred             CCccccC
Q 019384          327 EIEVKPK  333 (342)
Q Consensus       327 ~~~~~~~  333 (342)
                      ......+
T Consensus       296 ~~~~~~~  302 (313)
T 3odt_A          296 KSRWASE  302 (313)
T ss_dssp             GGGCCC-
T ss_pred             CCceeeh
Confidence            6544443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5e-35  Score=263.88  Aligned_cols=241  Identities=17%  Similarity=0.218  Sum_probs=190.6

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-----eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEecc
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-----LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSH   90 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-----~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~   90 (342)
                      ..|...|.+++|+|++++|++|+.|++|+|||+.+..     .....+|.+.|.++.|++++.+++++.|++|++||+.+
T Consensus        94 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~  173 (340)
T 1got_B           94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET  173 (340)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCC
Confidence            4578899999999999999999999999999997642     23345799999999999888899999999999999988


Q ss_pred             Cce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEE
Q 019384           91 GKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVN  169 (342)
Q Consensus        91 ~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~  169 (342)
                      +.. ..+.+|...|.+++|+|++.+|++|+.|++|++||+++...  ...+..+......++++++++.+++++.|++|+
T Consensus       174 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~  251 (340)
T 1got_B          174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC--RQTFTGHESDINAICFFPNGNAFATGSDDATCR  251 (340)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCee--EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEE
Confidence            774 46788999999999999999999999999999999976432  222333333333344555677999999999999


Q ss_pred             EEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE
Q 019384          170 VYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI  249 (342)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v  249 (342)
                      +||+++...............+.+++++|+++.+++++.|+.+.  +||.....  ....+.+|..         +|.++
T Consensus       252 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~--vwd~~~~~--~~~~~~~h~~---------~v~~~  318 (340)
T 1got_B          252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN--VWDALKAD--RAGVLAGHDN---------RVSCL  318 (340)
T ss_dssp             EEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEE--EEETTTCC--EEEEEECCSS---------CEEEE
T ss_pred             EEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEE--EEEcccCc--EeeEeecCCC---------cEEEE
Confidence            99998753322111112223578999999999999999999764  59975432  2233444543         69999


Q ss_pred             EEcCCCCeEEEecCCCeEEEEe
Q 019384          250 AFHPIYGTFATGGCDGFVNVWD  271 (342)
Q Consensus       250 ~~sp~~~~l~sgs~Dg~I~iWd  271 (342)
                      +|+|++.+|++|+.|++|+|||
T Consensus       319 ~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          319 GVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECTTSSCEEEEETTSCEEEEC
T ss_pred             EEcCCCCEEEEEcCCccEEecC
Confidence            9999999999999999999997

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.6e-34  Score=262.19  Aligned_cols=289  Identities=15%  Similarity=0.100  Sum_probs=218.9

Q ss_pred             CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce---eeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEec
Q 019384           14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV---LRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFS   89 (342)
Q Consensus        14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~---~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~   89 (342)
                      +...|.+.|++++|+|++++|++++.|++|+|||+.+++   ......|.+.|.+++|++++. +++++.|+.+++|++.
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            445688999999999999999999999999999998874   344457999999999997665 5689999999999998


Q ss_pred             cCce---eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEc
Q 019384           90 HGKE---DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATA  164 (342)
Q Consensus        90 ~~~~---~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~  164 (342)
                      +++.   ..+..|...|.+++|+|++++|++++.|+.|++||++..............+...+.++.+  +++.+++++.
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence            8762   3457799999999999999999999999999999987643211111111223444555555  5668999999


Q ss_pred             CCeEEEEeCCCCC----------------CcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccc
Q 019384          165 GRHVNVYDLRNMS----------------QPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKY  228 (342)
Q Consensus       165 d~~v~iwd~~~~~----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~  228 (342)
                      |+.|++||++...                .............+.+++++|++..+++++.++.+  ++||.......  .
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i--~i~d~~~~~~~--~  238 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV--CLADADKKMAV--A  238 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE--EEEEGGGTTEE--E
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEE--EEEECCCCcee--E
Confidence            9999999975211                01111111233457899999999999999999976  45998654322  2


Q ss_pred             eeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC--ce--ee--------------------------
Q 019384          229 AFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN--KK--RL--------------------------  278 (342)
Q Consensus       229 ~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~--~~--~~--------------------------  278 (342)
                      .+..|.         .+|.+++|+|++.+|++| .|+.|++|+..+  ++  .+                          
T Consensus       239 ~~~~~~---------~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
T 1k8k_C          239 TLASET---------LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK  308 (372)
T ss_dssp             EEECSS---------CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred             EEccCC---------CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence            233332         268999999999988888 899999999877  32  00                          


Q ss_pred             ----------ecc-CCCCcceEEEEEC-CCC---CEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          279 ----------YQY-SKYPTSIAALSFS-RDG---RLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       279 ----------~~~-~~~~~~V~~v~~s-pdg---~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                                ..+ .+|...|++++|+ +||   ++|++++.++           .|.+|++..
T Consensus       309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg-----------~i~~W~~~~  361 (372)
T 1k8k_C          309 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG-----------GMSIWDVRS  361 (372)
T ss_dssp             C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTS-----------EEEEEEHHH
T ss_pred             cccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCC-----------ceEEEEecC
Confidence                      223 4899999999965 777   9999999777           699998864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-36  Score=285.12  Aligned_cols=238  Identities=12%  Similarity=0.132  Sum_probs=170.3

Q ss_pred             CCCCeEEEEEcCCC---------CeEEE-------------------EeCCCcEEEEECCCcee-----eeeeecCCceE
Q 019384           18 PSDGISNLRFSNHS---------DHLLV-------------------SSWDKSVRLYDASANVL-----RGEFMHGGPVL   64 (342)
Q Consensus        18 ~~~~V~~l~fs~~~---------~~l~s-------------------~s~Dgti~vwd~~~~~~-----~~~~~h~~~V~   64 (342)
                      +...|++|+|+|++         ++||+                   ++.|++|+|||+.++++     .....|.+.|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            35678888888875         45554                   66889999999976543     12335678999


Q ss_pred             EEEEeCC-------CCeEEEecCCcEEEEEeccCce------------eecccCCcceeEEEEeCCCCEEEEeeCCCcEE
Q 019384           65 DCCFHDD-------SSGFSASADHTVRRLVFSHGKE------------DILGKHDAPVRCIEYSYAAGQVITGSWDKSLK  125 (342)
Q Consensus        65 ~~~~~~~-------~~~~s~s~D~~i~~w~~~~~~~------------~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~  125 (342)
                      +++|+|+       +.+++++.|++|++|++..+..            ..+.+|...|.+++|+++ +.|++|+.||+|+
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~  290 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA  290 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence            9999875       3567899999999999976531            246789999999999985 5899999999999


Q ss_pred             EEcCCCCCCcceeeeeecCCCCcEEEE--ec--cC-CeEEEEEcCCeEEEEeCCCCCCcccccccccc-eeeEEEEEeeC
Q 019384          126 CWDPRGASGQERTLVGTYPQPERVYSL--SL--VG-NRLVVATAGRHVNVYDLRNMSQPEQRRESSLK-YQTRCVRCYPN  199 (342)
Q Consensus       126 iWd~~~~~~~~~~~~~~~~~~~~v~~~--s~--~~-~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~  199 (342)
                      +||++++... ...+..  +...|.++  .+  ++ ..+++++.|++|++||+++.+...... .+.. ..+.+++++|+
T Consensus       291 lWD~~~~~~~-~~~~~~--H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~~~~~~v~~v~fsp~  366 (524)
T 2j04_B          291 EFDLTDPEVP-SFYDQV--HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SRFRGSNLVPVVYCPQ  366 (524)
T ss_dssp             EEETTBCSSC-SEEEEC--SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EECSCCSCCCEEEETT
T ss_pred             EEECCCCCCc-eEEeec--ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-cccccCcccceEeCCC
Confidence            9999754221 122333  33456555  33  34 578999999999999998753221111 1111 13567899999


Q ss_pred             CceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          200 GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       200 ~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      ++.+++++.++.+  ++||.+....  ...+.+|..         +|++|+|+|++++|++|+.||+|++||..
T Consensus       367 ~~~l~s~~~d~tv--~lwd~~~~~~--~~~l~gH~~---------~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          367 IYSYIYSDGASSL--RAVPSRAAFA--VHPLVSRET---------TITAIGVSRLHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             TTEEEEECSSSEE--EEEETTCTTC--CEEEEECSS---------CEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred             cCeEEEeCCCCcE--EEEECccccc--ceeeecCCC---------ceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence            9999999988875  5699865322  233445543         69999999999999999999999999853

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.8e-35  Score=262.58  Aligned_cols=259  Identities=14%  Similarity=0.178  Sum_probs=188.1

Q ss_pred             CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce---eeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEecc
Q 019384           15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV---LRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSH   90 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~---~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~   90 (342)
                      ..+|...|++++|+|++++||+|+.|++|+|||...+.   .....+|.+.|.+++|+|++. +++++.|++|++|++..
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence            36799999999999999999999999999999987653   334557999999999997765 56999999999999987


Q ss_pred             Cc----eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE--eccCCeEEEEEc
Q 019384           91 GK----EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL--SLVGNRLVVATA  164 (342)
Q Consensus        91 ~~----~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~--s~~~~~~~~~s~  164 (342)
                      ..    ...+.+|...|.+++|+|++++|++|+.|++|++||.+.........+..  +...+.++  +++++.+++++.
T Consensus       137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~--h~~~v~~l~~sp~g~~l~s~s~  214 (345)
T 3fm0_A          137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEG--HESTVWSLAFDPSGQRLASCSD  214 (345)
T ss_dssp             TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECC--CSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecC--CCCceEEEEECCCCCEEEEEeC
Confidence            64    23567899999999999999999999999999999986532111112222  33445544  455678999999


Q ss_pred             CCeEEEEeCCCCCCccc--------------ccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh--cccc
Q 019384          165 GRHVNVYDLRNMSQPEQ--------------RRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ--AKKY  228 (342)
Q Consensus       165 d~~v~iwd~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~--~~~~  228 (342)
                      |++|++||.........              .........+.+++++|++..+++++.|+.+++  |+......  ...+
T Consensus       215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~v--w~~~~~~~~~~~~~  292 (345)
T 3fm0_A          215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRV--FQEDPNSDPQQPTF  292 (345)
T ss_dssp             TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEE--EEECTTSCTTSCCE
T ss_pred             CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEE--EEeCCCCCcceeeE
Confidence            99999999743321100              000112335778999999999999999998765  66543221  1222


Q ss_pred             eeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCCceeeecc
Q 019384          229 AFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNNKKRLYQY  281 (342)
Q Consensus       229 ~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~~~~~~~~  281 (342)
                      .+..|...    .|...|++|+|+|++. +||+|+.||+|++|+..+++....+
T Consensus       293 ~~~~~~~~----~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          293 SLTAHLHQ----AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             EEEEEETT----SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             EEEeeecc----cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            23333211    2334699999999984 8999999999999999887665443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-34  Score=263.76  Aligned_cols=282  Identities=15%  Similarity=0.131  Sum_probs=213.9

Q ss_pred             CCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEEC----CCce------eeeeee-----------cCCceEEEEEeCCCC-
Q 019384           17 PPSDGISNLRFSNHSD-HLLVSSWDKSVRLYDA----SANV------LRGEFM-----------HGGPVLDCCFHDDSS-   73 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~-~l~s~s~Dgti~vwd~----~~~~------~~~~~~-----------h~~~V~~~~~~~~~~-   73 (342)
                      .|.+.|++++|+|+++ +||+|+.||+|+|||+    .++.      ....+.           |.+.|.+++|++++. 
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  122 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS  122 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence            3458999999999999 9999999999999999    7765      222222           577999999997765 


Q ss_pred             eEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCccee---------------
Q 019384           74 GFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERT---------------  138 (342)
Q Consensus        74 ~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~---------------  138 (342)
                      +++++.|+.|++|+........+.+|...|.+++|+|+++.|++++.|+.|++||+++.......               
T Consensus       123 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  202 (425)
T 1r5m_A          123 IVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH  202 (425)
T ss_dssp             EEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------------
T ss_pred             EEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccc
Confidence            56899999999999544445667889999999999999999999999999999998653211000               


Q ss_pred             ------------------------------------eeeec-CCCCcEEE--EeccCCeEEEEEcCCeEEEEeCCCCCCc
Q 019384          139 ------------------------------------LVGTY-PQPERVYS--LSLVGNRLVVATAGRHVNVYDLRNMSQP  179 (342)
Q Consensus       139 ------------------------------------~~~~~-~~~~~v~~--~s~~~~~~~~~s~d~~v~iwd~~~~~~~  179 (342)
                                                          ..... .+...+.+  ++.+++.+++++.|+.|++||+++....
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  282 (425)
T 1r5m_A          203 SGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ  282 (425)
T ss_dssp             ---CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS
T ss_pred             cCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc
Confidence                                                00000 12233444  4445678999999999999999876433


Q ss_pred             ccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEE
Q 019384          180 EQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFA  259 (342)
Q Consensus       180 ~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~  259 (342)
                      ...  ......+.++.++|++ .+++++.++.+  ++||.......  ..+..|.         .+|.+++|+|++++|+
T Consensus       283 ~~~--~~~~~~i~~~~~~~~~-~l~~~~~d~~i--~i~d~~~~~~~--~~~~~~~---------~~i~~~~~s~~~~~l~  346 (425)
T 1r5m_A          283 NCF--YGHSQSIVSASWVGDD-KVISCSMDGSV--RLWSLKQNTLL--ALSIVDG---------VPIFAGRISQDGQKYA  346 (425)
T ss_dssp             EEE--CCCSSCEEEEEEETTT-EEEEEETTSEE--EEEETTTTEEE--EEEECTT---------CCEEEEEECTTSSEEE
T ss_pred             eEe--cCCCccEEEEEECCCC-EEEEEeCCCcE--EEEECCCCcEe--EecccCC---------ccEEEEEEcCCCCEEE
Confidence            222  2234567899999999 88899999876  56998643221  2222222         2689999999999999


Q ss_pred             EecCCCeEEEEeCCCce--------------------eeeccCCCCc--ceEEEEECCCCCEEEEEEeccccCCCCCCCC
Q 019384          260 TGGCDGFVNVWDGNNKK--------------------RLYQYSKYPT--SIAALSFSRDGRLLAVASSYTFEEGDKPHEP  317 (342)
Q Consensus       260 sgs~Dg~I~iWd~~~~~--------------------~~~~~~~~~~--~V~~v~~spdg~~las~s~~~~~~~~~~~~~  317 (342)
                      +|+.||.|++||+.+++                    .+..+.+|..  .|.+++|+||+++|++++.++          
T Consensus       347 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----------  416 (425)
T 1r5m_A          347 VAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQ----------  416 (425)
T ss_dssp             EEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSS----------
T ss_pred             EEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCc----------
Confidence            99999999999998877                    7888899976  999999999999999998766          


Q ss_pred             CcEEEEEc
Q 019384          318 DAIFVRSV  325 (342)
Q Consensus       318 ~~~~~~~~  325 (342)
                       .|.+|++
T Consensus       417 -~i~iw~~  423 (425)
T 1r5m_A          417 -EGSVVAI  423 (425)
T ss_dssp             -CCEEEEC
T ss_pred             -eEEEEee
Confidence             4888876

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-35  Score=271.17  Aligned_cols=285  Identities=13%  Similarity=0.115  Sum_probs=215.3

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC----c-eeeeeeecCCceEEEEEeCC-C-CeEEEecCCcEEEEEe
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA----N-VLRGEFMHGGPVLDCCFHDD-S-SGFSASADHTVRRLVF   88 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~----~-~~~~~~~h~~~V~~~~~~~~-~-~~~s~s~D~~i~~w~~   88 (342)
                      ..|...|++++|+|++++|++++.||+|+|||+..    . .......|.+.|.+++|+++ + .+++++.|+.|++|++
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            35788999999999999999999999999999976    2 34455679999999999865 4 5679999999999999


Q ss_pred             ccCc------ee----ecccCCcceeEEEEeCC-CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC----CCCcEEEEe
Q 019384           89 SHGK------ED----ILGKHDAPVRCIEYSYA-AGQVITGSWDKSLKCWDPRGASGQERTLVGTYP----QPERVYSLS  153 (342)
Q Consensus        89 ~~~~------~~----~~~~h~~~V~~~~~~~~-~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~----~~~~v~~~s  153 (342)
                      .+..      ..    .+..|...|.+++|+|+ +.+|++++.|+.|++||+++...  ...+....    +...+.++.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~  221 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE--VIHLSYTSPNSGIKQQLSVVE  221 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE--EEEECCCCCSSCCCCCEEEEE
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc--ceEEeccccccccCCceEEEE
Confidence            8765      21    23579999999999998 68999999999999999976432  11222110    034455555


Q ss_pred             cc--C-CeEEEEEcCC---eEEEEeCCCCCCcccccccccceeeEEEEEee-CCceEEEEccCCeEEEEEeechhhhhcc
Q 019384          154 LV--G-NRLVVATAGR---HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYP-NGTGYALSSVEGRVAMEFFDLSEASQAK  226 (342)
Q Consensus       154 ~~--~-~~~~~~s~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~s~~~~~~i~~~d~~~~~~~~  226 (342)
                      ++  + ..+++++.|+   .|++||+++...+...........+.+++++| ++..+++++.|+.+  ++||......  
T Consensus       222 ~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v--~~wd~~~~~~--  297 (416)
T 2pm9_A          222 WHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTV--LLWNPESAEQ--  297 (416)
T ss_dssp             ECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEE--EEECSSSCCE--
T ss_pred             ECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCE--EEeeCCCCcc--
Confidence            54  3 4788899998   99999999864333322213445688999999 88999999999976  4699864322  


Q ss_pred             cceeeeEEecCCCCceeeeeeEEEEcCCC-CeEEEecCCCeEEEEeCCCceeeeccC-----------------------
Q 019384          227 KYAFKCHRKSEAGRDIVYPVNAIAFHPIY-GTFATGGCDGFVNVWDGNNKKRLYQYS-----------------------  282 (342)
Q Consensus       227 ~~~~~~h~~~~~~~~~~~~v~~v~~sp~~-~~l~sgs~Dg~I~iWd~~~~~~~~~~~-----------------------  282 (342)
                      ...+..|.         .+|.+++|+|++ .+|++++.||+|++||+.+........                       
T Consensus       298 ~~~~~~~~---------~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (416)
T 2pm9_A          298 LSQFPARG---------NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESK  368 (416)
T ss_dssp             EEEEECSS---------SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CC
T ss_pred             ceeecCCC---------CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccc
Confidence            22333333         268999999998 799999999999999998655332211                       


Q ss_pred             ------------CCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384          283 ------------KYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       283 ------------~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                                  .|...+.+++|||||++||+++.+.           .|.+|+++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~-----------~v~~w~~~  413 (416)
T 2pm9_A          369 EKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGK-----------GVSITNPK  413 (416)
T ss_dssp             SCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSS-----------CBCCBCCC
T ss_pred             cccccccccCCccccCCccceEEeeCCeEEEEeCCCC-----------eEEEEEec
Confidence                        1677888999999999999887544           37777664

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-34  Score=269.96  Aligned_cols=284  Identities=11%  Similarity=0.060  Sum_probs=205.8

Q ss_pred             CCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCC---ce---eeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEE
Q 019384           16 NPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASA---NV---LRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLV   87 (342)
Q Consensus        16 ~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~---~~---~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~   87 (342)
                      ..|.+.|++++|+| ++++||||+.||+|+|||+.+   +.   ....+.|.+.|.+++|++++. +++++.|+.|++|+
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd  139 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLK  139 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence            67889999999999 999999999999999999865   32   234457999999999997655 57999999999999


Q ss_pred             ec---cCce-ee----------ccc--CCcceeEEE--EeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcE
Q 019384           88 FS---HGKE-DI----------LGK--HDAPVRCIE--YSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERV  149 (342)
Q Consensus        88 ~~---~~~~-~~----------~~~--h~~~V~~~~--~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v  149 (342)
                      +.   .++. ..          +..  +...+.++.  +++++..|++|+.|++|++||+++...  ...+....+...+
T Consensus       140 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~h~~~v  217 (437)
T 3gre_A          140 VNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER--LQIIENSPRHGAV  217 (437)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE--EEEEECCGGGCCE
T ss_pred             eccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee--eEEEccCCCCCce
Confidence            95   3331 11          112  566677777  557888999999999999999976432  2223321123345


Q ss_pred             EEE--eccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEe----eCCceEEEEccCCeEEEEEeechhhh
Q 019384          150 YSL--SLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCY----PNGTGYALSSVEGRVAMEFFDLSEAS  223 (342)
Q Consensus       150 ~~~--s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~s~~~~~~i~~~d~~~~~  223 (342)
                      .++  +.+++.+++++.|+.|++||+++.... ..........+.+++++    +++..+++++.|+.+  ++||.....
T Consensus       218 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i--~iwd~~~~~  294 (437)
T 3gre_A          218 SSICIDEECCVLILGTTRGIIDIWDIRFNVLI-RSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL--TIWNFVKGH  294 (437)
T ss_dssp             EEEEECTTSCEEEEEETTSCEEEEETTTTEEE-EEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE--EEEETTTTE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEEcCCccEE-EEEecCCCCceEEEEeccccCCCccEEEEEcCCCcE--EEEEcCCCc
Confidence            554  446678999999999999999875322 22111233467788555    467788999998866  569986543


Q ss_pred             hcccceeeeEEec-----------------CCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCC---
Q 019384          224 QAKKYAFKCHRKS-----------------EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSK---  283 (342)
Q Consensus       224 ~~~~~~~~~h~~~-----------------~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~---  283 (342)
                      ...  .+..|...                 ..+..+..+|.+++|+ ++++|++|+.||+|++||+.+++.+..+.+   
T Consensus       295 ~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~  371 (437)
T 3gre_A          295 CQY--AFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSR  371 (437)
T ss_dssp             EEE--EEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--
T ss_pred             EEE--EEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccc
Confidence            221  22222110                 0011244579999999 778999999999999999998876665554   


Q ss_pred             ----------------------------------CCcceEEEEECCC--CCEEEEEEecc
Q 019384          284 ----------------------------------YPTSIAALSFSRD--GRLLAVASSYT  307 (342)
Q Consensus       284 ----------------------------------~~~~V~~v~~spd--g~~las~s~~~  307 (342)
                                                        |...|++++|+++  +.+|++|+.++
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG  431 (437)
T 3gre_A          372 FSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSG  431 (437)
T ss_dssp             CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTS
T ss_pred             cCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCc
Confidence                                              8899999999998  77999998877

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.2e-33  Score=248.13  Aligned_cols=277  Identities=15%  Similarity=0.158  Sum_probs=205.2

Q ss_pred             eEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee---ecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCce-eec
Q 019384           22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF---MHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKE-DIL   96 (342)
Q Consensus        22 V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~---~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~-~~~   96 (342)
                      .+.|+||+++ +||+ +.|++|+|||+.++++...+   .|...|.+++|++++. +++|+.|++|++|++.+++. ..+
T Consensus        28 ~~~l~WS~~~-~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            5779999885 6665 46999999999988765443   5788899999997765 56999999999999998874 567


Q ss_pred             ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCC
Q 019384           97 GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNM  176 (342)
Q Consensus        97 ~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~  176 (342)
                      .+|...+.++.+.  +..+++++.++.+++|+....... ...+..+........+...++.+++++.|++|++||++++
T Consensus       106 ~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          106 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHH-VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             ECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE-EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred             cCccceEEEeecC--CCEEEEEecCCceEeeecCCCcee-EEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence            8899888877664  578999999999999997654331 1222333333334445556789999999999999999876


Q ss_pred             CCccc--ccccccceeeEEEEEeeCCceE-E--EEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEE
Q 019384          177 SQPEQ--RRESSLKYQTRCVRCYPNGTGY-A--LSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF  251 (342)
Q Consensus       177 ~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~--~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  251 (342)
                      +....  .........+.++.+.|.+..+ .  .++.++.  +++||........   ...+         ...+..++|
T Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--i~lwd~~~~~~~~---~~~~---------~~~v~~~~~  248 (318)
T 4ggc_A          183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH--IRIWNVCSGACLS---AVDA---------HSQVCSILW  248 (318)
T ss_dssp             TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE--EEEEETTTCCEEE---EEEC---------SSCEEEEEE
T ss_pred             cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCE--EEEEecccccccc---cccc---------eeeeeeeee
Confidence            43211  1112233456778888876543 3  3344554  5679875432111   1111         125888999


Q ss_pred             cCCCCeEEEe--cCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccCC
Q 019384          252 HPIYGTFATG--GCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEI  328 (342)
Q Consensus       252 sp~~~~l~sg--s~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~  328 (342)
                      +|++..++++  +.|++|+|||+++++++.++.+|.+.|++++|+|||++||+||.+.           .|.+|++.|.
T Consensus       249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~-----------~v~iWd~~~~  316 (318)
T 4ggc_A          249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE-----------TLRLWRCFEL  316 (318)
T ss_dssp             ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTT-----------EEEEECCSCC
T ss_pred             cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCC-----------eEEEEECCCC
Confidence            9999987654  5899999999999999999999999999999999999999999776           6999988664

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.3e-33  Score=259.07  Aligned_cols=279  Identities=16%  Similarity=0.185  Sum_probs=210.3

Q ss_pred             CeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee---ecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCc-eee
Q 019384           21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF---MHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK-EDI   95 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~---~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~-~~~   95 (342)
                      ..+.|+||++ +.||+| .|++|+|||+.++++....   .|.+.|++++|++++. +++|+.|++|++|++.+++ ...
T Consensus       107 y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             TCBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            4567999975 466665 5999999999988755443   5778899999997766 4699999999999999887 456


Q ss_pred             cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCC
Q 019384           96 LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRN  175 (342)
Q Consensus        96 ~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~  175 (342)
                      +.+|...|.+++++  +..|++|+.|+++++||.+..... ...+..+........+...+..+++++.|+.+++||+.+
T Consensus       185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~-~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~  261 (420)
T 4gga_A          185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHH-VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  261 (420)
T ss_dssp             ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE-EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccccee-eEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence            78999999999875  578999999999999998754332 122333333333444555677999999999999999987


Q ss_pred             CCCccc--ccccccceeeEEEEEeeCCceE-EEE--ccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384          176 MSQPEQ--RRESSLKYQTRCVRCYPNGTGY-ALS--SVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA  250 (342)
Q Consensus       176 ~~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~--s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  250 (342)
                      .+....  .........+.+++++|.+..+ +++  +.|+.+  ++||+.......  .+..|          ..+.++.
T Consensus       262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I--~iwd~~t~~~~~--~~~~~----------~~v~~~~  327 (420)
T 4gga_A          262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI--RIWNVCSGACLS--AVDAH----------SQVCSIL  327 (420)
T ss_dssp             CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEE--EEEETTTTEEEE--EEECS----------SCEEEEE
T ss_pred             ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEE--EEEeCCccccce--eeccc----------cceeeee
Confidence            643211  1122334457888999876544 443  456654  679986543221  12221          1478899


Q ss_pred             EcCCCCeEEEec--CCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccCC
Q 019384          251 FHPIYGTFATGG--CDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEI  328 (342)
Q Consensus       251 ~sp~~~~l~sgs--~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~  328 (342)
                      |+|+++.+++++  .|++|+|||..+++++.++.+|.+.|++++|||||++||+|+.+.           .|.+|++.+.
T Consensus       328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~-----------tvriWdv~~~  396 (420)
T 4gga_A          328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE-----------TLRLWRCFEL  396 (420)
T ss_dssp             EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTT-----------EEEEECCSCS
T ss_pred             ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCC-----------eEEEEECCCC
Confidence            999999887654  899999999999999999999999999999999999999999876           6899988764


Q ss_pred             c
Q 019384          329 E  329 (342)
Q Consensus       329 ~  329 (342)
                      +
T Consensus       397 ~  397 (420)
T 4gga_A          397 D  397 (420)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.4e-33  Score=258.96  Aligned_cols=280  Identities=13%  Similarity=0.131  Sum_probs=208.6

Q ss_pred             CeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCc-eeecc
Q 019384           21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK-EDILG   97 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~-~~~~~   97 (342)
                      .+....|++++++||+|+.||+|+|||+.++..... ..|.+.|.+++|++++. +++++.|+.|++|++.+++ ...+.
T Consensus        99 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  178 (420)
T 3vl1_A           99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI  178 (420)
T ss_dssp             EEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE
T ss_pred             ceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc
Confidence            344457899999999999999999999998877666 48999999999997765 5699999999999998876 45678


Q ss_pred             cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeec-CCCCcEEE-----------------------Ee
Q 019384           98 KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTY-PQPERVYS-----------------------LS  153 (342)
Q Consensus        98 ~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~-~~~~~v~~-----------------------~s  153 (342)
                      +|...|.+++|+|+++.|++++.|++|++||++++..  ...+... .....+.+                       ++
T Consensus       179 ~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s  256 (420)
T 3vl1_A          179 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT--IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG  256 (420)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE--EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce--eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence            8999999999999999999999999999999975432  1122111 11112222                       23


Q ss_pred             ccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCc-eEEEEccCCeEEEEEeechhhhhcccceeee
Q 019384          154 LVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGT-GYALSSVEGRVAMEFFDLSEASQAKKYAFKC  232 (342)
Q Consensus       154 ~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~  232 (342)
                      .+++.+++++.|+.|++||+++....... .......+.+++++|++. .+++++.++.+  ++||++..... ...+..
T Consensus       257 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i--~vwd~~~~~~~-~~~~~~  332 (420)
T 3vl1_A          257 TYGKYVIAGHVSGVITVHNVFSKEQTIQL-PSKFTCSCNSLTVDGNNANYIYAGYENGML--AQWDLRSPECP-VGEFLI  332 (420)
T ss_dssp             CTTEEEEEEETTSCEEEEETTTCCEEEEE-CCTTSSCEEEEEECSSCTTEEEEEETTSEE--EEEETTCTTSC-SEEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCceeEEc-ccccCCCceeEEEeCCCCCEEEEEeCCCeE--EEEEcCCCcCc-hhhhhc
Confidence            35568999999999999999886543222 223345688999999998 89999999976  56998654321 222333


Q ss_pred             EEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCce---------eeeccCCCCcceEEEEECCCCC---EE
Q 019384          233 HRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK---------RLYQYSKYPTSIAALSFSRDGR---LL  300 (342)
Q Consensus       233 h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~---------~~~~~~~~~~~V~~v~~spdg~---~l  300 (342)
                      |..        .+|.++.+ |++++|++++.|++|++||+.+..         ....+..|...|.+++|+||++   .|
T Consensus       333 ~~~--------~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l  403 (420)
T 3vl1_A          333 NEG--------TPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEV  403 (420)
T ss_dssp             STT--------SCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEE
T ss_pred             cCC--------CCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceE
Confidence            211        25777755 578899999999999999987531         1223457888999999999999   55


Q ss_pred             EEEEeccccCCCCCCCCCcEEEEEcc
Q 019384          301 AVASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       301 as~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                      ++++.++           .+.+|+++
T Consensus       404 ~a~g~~g-----------~~~~~~~~  418 (420)
T 3vl1_A          404 LEVGKNN-----------FCALYNLS  418 (420)
T ss_dssp             EEEETTT-----------EEEEEESC
T ss_pred             EEEcCCc-----------eEEEEecc
Confidence            5555544           37778774

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.2e-34  Score=258.83  Aligned_cols=248  Identities=18%  Similarity=0.176  Sum_probs=179.5

Q ss_pred             CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce---eeeeeecCCceEEEEEeC---CCCeEEEecCCcEEEEEe
Q 019384           15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV---LRGEFMHGGPVLDCCFHD---DSSGFSASADHTVRRLVF   88 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~---~~~~~~h~~~V~~~~~~~---~~~~~s~s~D~~i~~w~~   88 (342)
                      ..+|.+.|++++|+|+|++||||+.|++|+|||+.++.   +....+|.+.|.+++|++   +..+++|+.|++|++||+
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~   88 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE   88 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence            36799999999999999999999999999999997653   334568999999999963   456789999999999999


Q ss_pred             ccCc---eeecccCCcceeEEEEeCC--CCEEEEeeCCCcEEEEcCCCCCCcc-eeeeeecCCCCcEEEEecc-------
Q 019384           89 SHGK---EDILGKHDAPVRCIEYSYA--AGQVITGSWDKSLKCWDPRGASGQE-RTLVGTYPQPERVYSLSLV-------  155 (342)
Q Consensus        89 ~~~~---~~~~~~h~~~V~~~~~~~~--~~~l~sgs~D~~I~iWd~~~~~~~~-~~~~~~~~~~~~v~~~s~~-------  155 (342)
                      .++.   ...+.+|...|++++|+|+  +.+|++|+.|++|++||++...... ...+..+......+.++++       
T Consensus        89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  168 (316)
T 3bg1_A           89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI  168 (316)
T ss_dssp             SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC----
T ss_pred             CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccc
Confidence            8764   2356789999999999997  6789999999999999987532110 0111112112222233332       


Q ss_pred             ----------CCeEEEEEcCCeEEEEeCCCCCCc-ccccccccceeeEEEEEeeCC----ceEEEEccCCeEEEEEeech
Q 019384          156 ----------GNRLVVATAGRHVNVYDLRNMSQP-EQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAMEFFDLS  220 (342)
Q Consensus       156 ----------~~~~~~~s~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~----~~~~~~s~~~~~~i~~~d~~  220 (342)
                                +..+++++.|++|++||++..... .......+...+.+++|+|++    ..+++++.|+.+.  +|+..
T Consensus       169 ~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~--iw~~~  246 (316)
T 3bg1_A          169 DHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF--IWTCD  246 (316)
T ss_dssp             --CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEE--EEECS
T ss_pred             ccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEE--EEEcc
Confidence                      247899999999999999754211 111112334468899999986    7799999999875  58875


Q ss_pred             hhhh--cccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          221 EASQ--AKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       221 ~~~~--~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      ....  .....+..|.         ..|.+++|+|++++|++|+.|++|+||+..
T Consensus       247 ~~~~~~~~~~~~~~~~---------~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          247 DASSNTWSPKLLHKFN---------DVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             STTCCCCBCCEEEECS---------SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CccccchhhhhhhcCC---------CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            4211  1111223332         269999999999999999999999999965

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.1e-34  Score=262.95  Aligned_cols=239  Identities=17%  Similarity=0.198  Sum_probs=190.4

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~   93 (342)
                      ..|.+.|++++|+|++++|+||+.|++|+|||+.++... ...+|.+.|.+++|+|++. +++++.|++|++||+.++..
T Consensus       147 ~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~  226 (410)
T 1vyh_C          147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC  226 (410)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred             eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            578999999999999999999999999999999886644 4467999999999997665 67999999999999988773


Q ss_pred             -eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc-----------------
Q 019384           94 -DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV-----------------  155 (342)
Q Consensus        94 -~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~-----------------  155 (342)
                       ..+.+|...|.++++++++..|++|+.|++|++||+++...  ...+..  +...+.++.+.                 
T Consensus       227 ~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~--~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~~~  302 (410)
T 1vyh_C          227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC--KAELRE--HRHVVECISWAPESSYSSISEATGSETK  302 (410)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--EEEECC--CSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred             EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCce--eeEecC--CCceEEEEEEcCcccccchhhhcccccc
Confidence             56789999999999999999999999999999999976432  122222  33344444443                 


Q ss_pred             -----CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccccee
Q 019384          156 -----GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAF  230 (342)
Q Consensus       156 -----~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~  230 (342)
                           +..+++++.|++|++||++++......  ..+...+.+++++|++..+++++.|+.++  +||.....  ....+
T Consensus       303 ~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~--~~h~~~v~~v~~~~~g~~l~s~s~D~~i~--vwd~~~~~--~~~~~  376 (410)
T 1vyh_C          303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL--VGHDNWVRGVLFHSGGKFILSCADDKTLR--VWDYKNKR--CMKTL  376 (410)
T ss_dssp             -----CCEEEEEETTSEEEEEETTTTEEEEEE--ECCSSCEEEEEECSSSSCEEEEETTTEEE--EECCTTSC--CCEEE
T ss_pred             ccCCCCCEEEEEeCCCeEEEEECCCCceEEEE--ECCCCcEEEEEEcCCCCEEEEEeCCCeEE--EEECCCCc--eEEEE
Confidence                 347999999999999999876432211  22344678999999999999999999765  59985432  22334


Q ss_pred             eeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       231 ~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      .+|..         .|.+++|+|++.+|++|+.||+|+||+.+
T Consensus       377 ~~h~~---------~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          377 NAHEH---------FVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             ECCSS---------CEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             cCCCC---------cEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            45543         69999999999999999999999999863

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.8e-33  Score=249.70  Aligned_cols=246  Identities=13%  Similarity=0.164  Sum_probs=190.8

Q ss_pred             eeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCC
Q 019384           54 RGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG  131 (342)
Q Consensus        54 ~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~  131 (342)
                      ....+|.+.|.+++|+|++. +++++.|++|++|++.++. ...+..|...|.+++|+|+++.|++|+.|++|++||+++
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~   86 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT   86 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            34567999999999998776 5699999999999998876 356788999999999999999999999999999999976


Q ss_pred             CCCcceeeeeecCCCCcEEEE--eccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEee-CCceEEEEcc
Q 019384          132 ASGQERTLVGTYPQPERVYSL--SLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYP-NGTGYALSSV  208 (342)
Q Consensus       132 ~~~~~~~~~~~~~~~~~v~~~--s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~s~  208 (342)
                      +..  ...+..  +...+.++  ++++..+++++.|++|++||+++....... .......+.+++++| ++..+++++.
T Consensus        87 ~~~--~~~~~~--h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           87 GEK--VVDFEA--HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-FEGHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             CCE--EEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE-ECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred             CcE--EEEEeC--CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh-hcccCCcEEEEEECCCCCCEEEEEeC
Confidence            432  222333  33445544  455668999999999999999875332222 123345688999999 5678999999


Q ss_pred             CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcC--CCCeEEEecCCCeEEEEeCCCceeeeccCCCCc
Q 019384          209 EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP--IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPT  286 (342)
Q Consensus       209 ~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp--~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~  286 (342)
                      |+.+.  +||.+....  ...+..+.        ...+..++|+|  ++.+|++|+.|++|++||+++++++..+.+|..
T Consensus       162 D~~v~--iwd~~~~~~--~~~~~~~~--------~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~  229 (304)
T 2ynn_A          162 DRTVK--VWSLGQSTP--NFTLTTGQ--------ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS  229 (304)
T ss_dssp             TSEEE--EEETTCSSC--SEEEECCC--------TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             CCeEE--EEECCCCCc--cceeccCC--------cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC
Confidence            99765  599854322  12222111        12578888876  678999999999999999999999999999999


Q ss_pred             ceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          287 SIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       287 ~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      .|.+++|+|++.+|++|+.+.           .|.+|++..
T Consensus       230 ~v~~~~~~p~~~~l~s~s~Dg-----------~i~iWd~~~  259 (304)
T 2ynn_A          230 NVSFAVFHPTLPIIISGSEDG-----------TLKIWNSST  259 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTS-----------CEEEEETTT
T ss_pred             CEEEEEECCCCCEEEEEcCCC-----------eEEEEECCC
Confidence            999999999999999999765           466666543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7.4e-33  Score=253.82  Aligned_cols=295  Identities=13%  Similarity=0.093  Sum_probs=218.4

Q ss_pred             CccCCCCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCceeeeee--------------ecCCceEEEEEeC-CC-C
Q 019384           11 GRELGNPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANVLRGEF--------------MHGGPVLDCCFHD-DS-S   73 (342)
Q Consensus        11 ~~~~~~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~~~~~~--------------~h~~~V~~~~~~~-~~-~   73 (342)
                      .......|.+.|++++|+| ++++||+|+.||+|+|||+.++......              +|.+.|.+++|++ ++ .
T Consensus        35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence            3445567999999999999 9999999999999999999876433222              3999999999987 54 4


Q ss_pred             eEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCC---CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEE
Q 019384           74 GFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAA---GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVY  150 (342)
Q Consensus        74 ~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~---~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~  150 (342)
                      +++++.|+.+++|++.++.......+...+.++++++.+   ..+++++.|+.|++||+++....  ..+..  +...+.
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~~~--~~~~v~  190 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS--HILQG--HRQEIL  190 (408)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC--EEECC--CCSCEE
T ss_pred             EEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee--eeecC--CCCcEE
Confidence            678999999999999988765555578889999999844   48999999999999999764331  22322  334455


Q ss_pred             EEec--cCC-eEEEEEcCCeEEEEeCCCCCCccccc--------------ccccceeeEEEEEeeCCceEEEEccCCeEE
Q 019384          151 SLSL--VGN-RLVVATAGRHVNVYDLRNMSQPEQRR--------------ESSLKYQTRCVRCYPNGTGYALSSVEGRVA  213 (342)
Q Consensus       151 ~~s~--~~~-~~~~~s~d~~v~iwd~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~  213 (342)
                      ++.+  +++ .+++++.|+.|++||+++........              .......+.+++++|+++.+++++.++.+ 
T Consensus       191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i-  269 (408)
T 4a11_B          191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM-  269 (408)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCE-
T ss_pred             EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeE-
Confidence            5555  445 48899999999999998764221111              02234567899999999999999999986 


Q ss_pred             EEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEE
Q 019384          214 MEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSF  293 (342)
Q Consensus       214 i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~  293 (342)
                       ++||..........  ..+....    ....+........+..++.++.|+.|++||..+++.+..+.+|...|.+++|
T Consensus       270 -~vwd~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~  342 (408)
T 4a11_B          270 -RLWNSSNGENTLVN--YGKVCNN----SKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVF  342 (408)
T ss_dssp             -EEEETTTCCBCCCC--CCCCCCC----CSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             -EEEECCCCccceec--ccccccc----ccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEE
Confidence             45998654332221  1111000    0011222233344567778888999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEeccccCCCCCCCCCcEEEEEccCC
Q 019384          294 SRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEI  328 (342)
Q Consensus       294 spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~  328 (342)
                      +||+++|++++.++           .|.+|+++..
T Consensus       343 s~~~~~l~s~~~dg-----------~i~iw~~~~~  366 (408)
T 4a11_B          343 QSNFQELYSGSRDC-----------NILAWVPSLY  366 (408)
T ss_dssp             ETTTTEEEEEETTS-----------CEEEEEECC-
T ss_pred             cCCCCEEEEECCCC-----------eEEEEeCCCC
Confidence            99999999998766           4777777643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.8e-33  Score=279.53  Aligned_cols=273  Identities=17%  Similarity=0.214  Sum_probs=217.8

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~   93 (342)
                      ..|.+.|.+++|+|++++||+++.||+|+|||+.++.... ...|.++|.+++|++++. +++++.|+.|++|++.+++.
T Consensus        10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~   89 (814)
T 3mkq_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK   89 (814)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            4688999999999999999999999999999998876544 456999999999997765 56899999999999988774


Q ss_pred             -eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec---cCCeEEEEEcCCeEE
Q 019384           94 -DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL---VGNRLVVATAGRHVN  169 (342)
Q Consensus        94 -~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~---~~~~~~~~s~d~~v~  169 (342)
                       ..+.+|...|++++|+|+++.|++++.|++|++||+++... ....+..  +...+.++.+   +++.+++++.|++|+
T Consensus        90 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~v~  166 (814)
T 3mkq_A           90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-LEQTFEG--HEHFVMCVAFNPKDPSTFASGCLDRTVK  166 (814)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE-EEEEEEC--CSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred             EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce-EEEEEcC--CCCcEEEEEEEcCCCCEEEEEeCCCeEE
Confidence             46788999999999999999999999999999999875322 1122222  3344555555   445899999999999


Q ss_pred             EEeCCCCCCcccccccccceeeEEEEEee--CCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384          170 VYDLRNMSQPEQRRESSLKYQTRCVRCYP--NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN  247 (342)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  247 (342)
                      +||+.+...... ........+.+++++|  ++..+++++.++.+  ++||......  ...+..|.         .+|.
T Consensus       167 vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i--~~~d~~~~~~--~~~~~~~~---------~~v~  232 (814)
T 3mkq_A          167 VWSLGQSTPNFT-LTTGQERGVNYVDYYPLPDKPYMITASDDLTI--KIWDYQTKSC--VATLEGHM---------SNVS  232 (814)
T ss_dssp             EEETTCSSCSEE-EECCCTTCCCEEEECCSTTCCEEEEECTTSEE--EEEETTTTEE--EEEEECCS---------SCEE
T ss_pred             EEECCCCcceeE-EecCCCCCEEEEEEEECCCCCEEEEEeCCCEE--EEEECCCCcE--EEEEcCCC---------CCEE
Confidence            999987643322 2222224567888998  89999999999976  5599854322  22233332         3699


Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCC--EEEEEEe
Q 019384          248 AIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGR--LLAVASS  305 (342)
Q Consensus       248 ~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~--~las~s~  305 (342)
                      +++|+|++.+|++|+.||+|++||..+++.+..+..|...|++++|+|+|.  ++++++.
T Consensus       233 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  292 (814)
T 3mkq_A          233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD  292 (814)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEET
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeC
Confidence            999999999999999999999999999998989999999999999999998  4666654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3e-33  Score=250.42  Aligned_cols=240  Identities=18%  Similarity=0.158  Sum_probs=192.8

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~   93 (342)
                      .+|...|.+++|++++.+++|++.|++|+|||+.+++... ...|...+.+++|+|++.. ++++.|+.+++|++.+++.
T Consensus        77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~  156 (321)
T 3ow8_A           77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK  156 (321)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce
Confidence            6799999999999999999999999999999998876544 4467888999999987764 6889999999999988774


Q ss_pred             -eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384           94 -DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD  172 (342)
Q Consensus        94 -~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd  172 (342)
                       ..+..|...|.+++|+|++++|++|+.|++|++||++++..  ...+..+......+.+++++..+++++.|++|++||
T Consensus       157 ~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd  234 (321)
T 3ow8_A          157 EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL--LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD  234 (321)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred             eEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE--EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEE
Confidence             45678889999999999999999999999999999975422  222333334445556666778999999999999999


Q ss_pred             CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384          173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH  252 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  252 (342)
                      +++......  .......+.+++++|++..+++++.|+.+.  +||+.....  ...+..|.         .+|.+++|+
T Consensus       235 ~~~~~~~~~--~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~--iwd~~~~~~--~~~~~~h~---------~~v~~v~~s  299 (321)
T 3ow8_A          235 VQHANLAGT--LSGHASWVLNVAFCPDDTHFVSSSSDKSVK--VWDVGTRTC--VHTFFDHQ---------DQVWGVKYN  299 (321)
T ss_dssp             TTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSCEE--EEETTTTEE--EEEECCCS---------SCEEEEEEC
T ss_pred             CCCcceeEE--EcCCCCceEEEEECCCCCEEEEEeCCCcEE--EEeCCCCEE--EEEEcCCC---------CcEEEEEEC
Confidence            987643221  123344578999999999999999999875  599864322  22333443         269999999


Q ss_pred             CCCCeEEEecCCCeEEEEeC
Q 019384          253 PIYGTFATGGCDGFVNVWDG  272 (342)
Q Consensus       253 p~~~~l~sgs~Dg~I~iWd~  272 (342)
                      |++.+|++++.||+|+|||.
T Consensus       300 ~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          300 GNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             TTSSEEEEEETTCCEEEEEC
T ss_pred             CCCCEEEEEeCCCeEEEEeC
Confidence            99999999999999999995

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.8e-33  Score=255.54  Aligned_cols=242  Identities=16%  Similarity=0.181  Sum_probs=178.3

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-----eeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEec
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-----RGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFS   89 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-----~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~   89 (342)
                      ..|..+|++++|+|++. +++++.||+|+|||+.+++.     ....+|.+.|.+++|++++. +++++.|+.|++||+.
T Consensus        91 ~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~  169 (357)
T 4g56_B           91 VQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS  169 (357)
T ss_dssp             EECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             CCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            36788999999999974 56789999999999977542     23347999999999997765 5699999999999999


Q ss_pred             cCce-eecccCCcceeEEEEeCCCC-EEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---CCeEEEEEc
Q 019384           90 HGKE-DILGKHDAPVRCIEYSYAAG-QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---GNRLVVATA  164 (342)
Q Consensus        90 ~~~~-~~~~~h~~~V~~~~~~~~~~-~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~~~~~~~s~  164 (342)
                      +++. ..+.+|...|++++|++++. .+++++.|++|++||++++....  .+....+...+.++.++   +..+++++.
T Consensus       170 ~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~--~~~~~~~~~~v~~v~~sp~~~~~la~g~~  247 (357)
T 4g56_B          170 QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT--RIDFCASDTIPTSVTWHPEKDDTFACGDE  247 (357)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC--BCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred             CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee--eeeeccccccccchhhhhcccceEEEeec
Confidence            8874 46789999999999999874 78999999999999998654321  12222233445555553   346888999


Q ss_pred             CCeEEEEeCCCCCCcccccccccceeeEEEEEeeCC-ceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384          165 GRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG-TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV  243 (342)
Q Consensus       165 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~  243 (342)
                      |+.|++||+++.+....  .......+.+++++|++ +.+++++.|+.++  +||......   ....+|.         
T Consensus       248 d~~i~~wd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~--iwd~~~~~~---~~~~~H~---------  311 (357)
T 4g56_B          248 TGNVSLVNIKNPDSAQT--SAVHSQNITGLAYSYHSSPFLASISEDCTVA--VLDADFSEV---FRDLSHR---------  311 (357)
T ss_dssp             SSCEEEEESSCGGGCEE--ECCCSSCEEEEEECSSSSCCEEEEETTSCEE--EECTTSCEE---EEECCCS---------
T ss_pred             ccceeEEECCCCcEeEE--EeccceeEEEEEEcCCCCCEEEEEeCCCEEE--EEECCCCcE---eEECCCC---------
Confidence            99999999987643221  12334567899999987 4688899999865  599854321   2222343         


Q ss_pred             eeeeEEEEcC-CCCeEEEecCCCeEEEEeCCCce
Q 019384          244 YPVNAIAFHP-IYGTFATGGCDGFVNVWDGNNKK  276 (342)
Q Consensus       244 ~~v~~v~~sp-~~~~l~sgs~Dg~I~iWd~~~~~  276 (342)
                      .+|++|+|+| ++.+|+||+.||+|++|++....
T Consensus       312 ~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          312 DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             SCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            3699999999 78899999999999999987543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.2e-33  Score=249.94  Aligned_cols=248  Identities=17%  Similarity=0.156  Sum_probs=184.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~   93 (342)
                      ..|...|++++|+|++++|+||+.|++|||||+.+++.. ...+|.+.|.+++|++++. +++++.|++|++|++.....
T Consensus        62 ~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~  141 (319)
T 3frx_A           62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL  141 (319)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEE
T ss_pred             eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            478999999999999999999999999999999887654 4568999999999997665 57999999999999987666


Q ss_pred             eecccCCcceeEEEEeCC------CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCe
Q 019384           94 DILGKHDAPVRCIEYSYA------AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRH  167 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~------~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~  167 (342)
                      ..+.+|...|.+++|.|.      +..|++++.|++|++||+++...  ...+..+......+.++++++.+++++.|++
T Consensus       142 ~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~  219 (319)
T 3frx_A          142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIASAGKDGE  219 (319)
T ss_dssp             EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE--EEEECCCCSCEEEEEECTTSSEEEEEETTCE
T ss_pred             EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh--heeecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            778899999999999984      34899999999999999975322  1122222223333445556678999999999


Q ss_pred             EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384          168 VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN  247 (342)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  247 (342)
                      |++||+++.+.....   .....+.+++++|++..++++..++ +  ++|+........  .+..+... ....+...+.
T Consensus       220 i~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~~~la~~~~~~-i--~v~~~~~~~~~~--~~~~~~~~-~~~~~~~~v~  290 (319)
T 3frx_A          220 IMLWNLAAKKAMYTL---SAQDEVFSLAFSPNRYWLAAATATG-I--KVFSLDPQYLVD--DLRPEFAG-YSKAAEPHAV  290 (319)
T ss_dssp             EEEEETTTTEEEEEE---ECCSCEEEEEECSSSSEEEEEETTE-E--EEEEETTEEEEE--EECCCCTT-CCGGGCCCEE
T ss_pred             EEEEECCCCcEEEEe---cCCCcEEEEEEcCCCCEEEEEcCCC-c--EEEEeCcCeeee--ccCccccc-cccCcCccee
Confidence            999999876432211   1224578899999999888776553 3  557764321111  11111000 0011223588


Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384          248 AIAFHPIYGTFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       248 ~v~~sp~~~~l~sgs~Dg~I~iWd~~~  274 (342)
                      +++|+|+|++|++|+.||+|+|||+.+
T Consensus       291 ~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          291 SLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             EEEECCCCCEEEEeecCceEEEEEEee
Confidence            999999999999999999999999865

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6.6e-33  Score=250.24  Aligned_cols=252  Identities=19%  Similarity=0.261  Sum_probs=183.0

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~   93 (342)
                      .+|...|++++|+|++.+|+||+.|++|+|||+.+++.. ...+|.+.|.+++|+|++. +++++.|++|++|++.....
T Consensus        73 ~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~  152 (343)
T 2xzm_R           73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK  152 (343)
T ss_dssp             CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce
Confidence            578999999999999999999999999999999887654 4557999999999997765 57999999999999975433


Q ss_pred             eec---ccCCcceeEEEEeCCC----------CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEE
Q 019384           94 DIL---GKHDAPVRCIEYSYAA----------GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLV  160 (342)
Q Consensus        94 ~~~---~~h~~~V~~~~~~~~~----------~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~  160 (342)
                      ...   .+|...|.+++|+|++          .+|++++.|++|++||.+.   .....+..+......++++++++.++
T Consensus       153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~h~~~v~~~~~s~~g~~l~  229 (343)
T 2xzm_R          153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF---QIRYTFKAHESNVNHLSISPNGKYIA  229 (343)
T ss_dssp             EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT---EEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC---ceeEEEcCccccceEEEECCCCCEEE
Confidence            322   3799999999999986          6899999999999999532   11222333333333344555677999


Q ss_pred             EEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEe--cCC
Q 019384          161 VATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK--SEA  238 (342)
Q Consensus       161 ~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~--~~~  238 (342)
                      +++.|++|++||++..........  ....+.+++++|++..++++ .++.+  ++||...........+..+..  ...
T Consensus       230 sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~~~la~~-~d~~v--~iw~~~~~~~~~~~~~~~~~~~~~~~  304 (343)
T 2xzm_R          230 TGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVAVG-TDQGV--KIFNLMTQSKAPVCTIEAEPITKAEG  304 (343)
T ss_dssp             EEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSSSCEEEEE-ESSCE--EEEESSSCCSCSEEECCCCSGGGBTT
T ss_pred             EEcCCCeEEEEECCCCcccceeec--CCCcEEEEEECCCCCEEEEE-CCCCE--EEEEeCCCCCCceEEeecCcchhhhh
Confidence            999999999999965433322221  22357899999998877655 45554  568875432222111211100  000


Q ss_pred             CCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCc
Q 019384          239 GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNK  275 (342)
Q Consensus       239 ~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~  275 (342)
                      ...+...|.+++|+|++++|++|+.||+|++|+.+++
T Consensus       305 ~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          305 QKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             BCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             hcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            0123346899999999999999999999999998754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.6e-34  Score=264.54  Aligned_cols=282  Identities=12%  Similarity=0.115  Sum_probs=204.9

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCcee-ecc
Q 019384           20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKED-ILG   97 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~-~~~   97 (342)
                      ..+++++|+|++++|++++.|++|++||+.++...........+....|++++. +++++.|+.|++|++.++... .+.
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  136 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ  136 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence            345689999999999999999999999998765443332333444455666554 568999999999999877754 457


Q ss_pred             cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCC
Q 019384           98 KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMS  177 (342)
Q Consensus        98 ~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~  177 (342)
                      +|...|.+++|+|++++|++|+.|++|++||+++....  ..+..+......+.++.+++.+++++.|++|++||+++.+
T Consensus       137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP--RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC--EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc--eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence            99999999999999999999999999999999765432  2233333333334455567789999999999999998764


Q ss_pred             Cccccccc-ccc---------------------eeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEe
Q 019384          178 QPEQRRES-SLK---------------------YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK  235 (342)
Q Consensus       178 ~~~~~~~~-~~~---------------------~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~  235 (342)
                      ........ ...                     ..+.+++++|+++.+++++.++.+.  +||.+.......  +..   
T Consensus       215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~--i~d~~~~~~~~~--~~~---  287 (420)
T 3vl1_A          215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVIT--VHNVFSKEQTIQ--LPS---  287 (420)
T ss_dssp             EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEE--EEETTTCCEEEE--ECC---
T ss_pred             eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEE--EEECCCCceeEE--ccc---
Confidence            32211110 111                     1223345678899999999999864  599865422211  111   


Q ss_pred             cCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCCcee-eeccCC-CCcceEEEEECCCCCEEEEEEeccccCCC
Q 019384          236 SEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNNKKR-LYQYSK-YPTSIAALSFSRDGRLLAVASSYTFEEGD  312 (342)
Q Consensus       236 ~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~~~~-~~~~~~-~~~~V~~v~~spdg~~las~s~~~~~~~~  312 (342)
                           .+..+|.+++|+|++. +|++|+.||.|++||+++++. +..+.. |...|.++.| |++++|++++.+.     
T Consensus       288 -----~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~-----  356 (420)
T 3vl1_A          288 -----KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDT-----  356 (420)
T ss_dssp             -----TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTE-----
T ss_pred             -----ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCc-----
Confidence                 1223699999999999 999999999999999998654 566665 6677888855 6888999988665     


Q ss_pred             CCCCCCcEEEEEccC
Q 019384          313 KPHEPDAIFVRSVNE  327 (342)
Q Consensus       313 ~~~~~~~~~~~~~~~  327 (342)
                            .|.+|++..
T Consensus       357 ------~v~iw~~~~  365 (420)
T 3vl1_A          357 ------SIKLDIISD  365 (420)
T ss_dssp             ------EEEEEEECC
T ss_pred             ------cEEEEeccC
Confidence                  477777654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-34  Score=262.58  Aligned_cols=247  Identities=15%  Similarity=0.090  Sum_probs=177.4

Q ss_pred             CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc--ee-eeeeecCCceEEEEEeCCC-CeEEEecCCcEEEEEec
Q 019384           14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN--VL-RGEFMHGGPVLDCCFHDDS-SGFSASADHTVRRLVFS   89 (342)
Q Consensus        14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~--~~-~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~   89 (342)
                      +...+.+.|++++|+|++++||+|+.|++|+|||+.++  .. ....+|.+.|.+++|++++ .+++++.|++|++|++.
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            34456779999999999999999999999999999876  33 3345799999999999765 56799999999999998


Q ss_pred             cCc----eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCc-ceeeeeecCCCCcEEEEec--cCCeEEEE
Q 019384           90 HGK----EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ-ERTLVGTYPQPERVYSLSL--VGNRLVVA  162 (342)
Q Consensus        90 ~~~----~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~-~~~~~~~~~~~~~v~~~s~--~~~~~~~~  162 (342)
                      ++.    ...+.+|...|.+++|+|+++.|++++.|++|++||+++.... ....+.. .+...+.++.+  +++.++++
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~  164 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPNNVLLAAG  164 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS-SCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec-ccCCCeEEEEEcCCCCEEEEE
Confidence            876    4456789999999999999999999999999999999764321 1112221 13444555554  56689999


Q ss_pred             EcCCeEEEEeCCCCCCcc---------------cccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcc-
Q 019384          163 TAGRHVNVYDLRNMSQPE---------------QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAK-  226 (342)
Q Consensus       163 s~d~~v~iwd~~~~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~-  226 (342)
                      +.|++|++||++......               ..........+.+++++|+++.+++++.|+.+  ++||........ 
T Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i--~iwd~~~~~~~~~  242 (377)
T 3dwl_C          165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSV--TIAYPSAPEQPPR  242 (377)
T ss_dssp             ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEE--C-CEECSTTSCEE
T ss_pred             eCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcE--EEEECCCCCCcce
Confidence            999999999986432100               00000333457899999999999999999976  459986543311 


Q ss_pred             -cceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          227 -KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       227 -~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                       ...+..|.         .+|.+++|+|++++|++|+.|+.+ +|+..
T Consensus       243 ~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          243 ALITVKLSQ---------LPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             ECCCEECSS---------SCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             eeEeecCCC---------CceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence             23334443         269999999999999999877777 56543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.5e-33  Score=255.10  Aligned_cols=283  Identities=16%  Similarity=0.211  Sum_probs=205.2

Q ss_pred             eEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee--ecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCc-eeecc
Q 019384           22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF--MHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK-EDILG   97 (342)
Q Consensus        22 V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~--~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~-~~~~~   97 (342)
                      +.+++|++  +.+++++.|++|+|||+.++......  .|.+.|.+++|++++. +++++.|+.+++|++.+++ ...+.
T Consensus        96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  173 (401)
T 4aez_A           96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA  173 (401)
T ss_dssp             CBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec
Confidence            44466664  67889999999999999887655443  3789999999997765 5688999999999998876 45677


Q ss_pred             cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEe--ccCCeEEEEEcCCeEEEEeCCC
Q 019384           98 KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLS--LVGNRLVVATAGRHVNVYDLRN  175 (342)
Q Consensus        98 ~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s--~~~~~~~~~s~d~~v~iwd~~~  175 (342)
                      +|...|.+++|+  ++.|++|+.|+.|++||++..... ...+..  +...+.++.  .+++.+++++.|+.|++||+++
T Consensus       174 ~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~  248 (401)
T 4aez_A          174 GHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQ-IGTLQG--HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS  248 (401)
T ss_dssp             CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE-EEEEEC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             CCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcce-eeEEcC--CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence            999999999995  579999999999999999743321 222333  334455544  4567899999999999999987


Q ss_pred             CCCcccccccccceeeEEEEEeeCCceE-EEEc--cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384          176 MSQPEQRRESSLKYQTRCVRCYPNGTGY-ALSS--VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH  252 (342)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~s--~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  252 (342)
                      .......  ......+.+++++|++..+ ++++  .++.+  ++||........  .+. +         ...|.+++|+
T Consensus       249 ~~~~~~~--~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i--~i~d~~~~~~~~--~~~-~---------~~~v~~~~~s  312 (401)
T 4aez_A          249 SIPKFTK--TNHNAAVKAVAWCPWQSNLLATGGGTMDKQI--HFWNAATGARVN--TVD-A---------GSQVTSLIWS  312 (401)
T ss_dssp             SSEEEEE--CCCSSCCCEEEECTTSTTEEEEECCTTTCEE--EEEETTTCCEEE--EEE-C---------SSCEEEEEEC
T ss_pred             CCccEEe--cCCcceEEEEEECCCCCCEEEEecCCCCCEE--EEEECCCCCEEE--EEe-C---------CCcEEEEEEC
Confidence            5432211  2234467899999977554 4443  57765  569986442221  111 1         1258999999


Q ss_pred             CCCCeEEE--ecCCCeEEEEeCCCceee--eccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccCC
Q 019384          253 PIYGTFAT--GGCDGFVNVWDGNNKKRL--YQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEI  328 (342)
Q Consensus       253 p~~~~l~s--gs~Dg~I~iWd~~~~~~~--~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~  328 (342)
                      |++..|++  |+.||.|++||..+++..  ..+.+|...|.+++|+|||++|++++.++           .|.+|++...
T Consensus       313 ~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg-----------~i~iw~~~~~  381 (401)
T 4aez_A          313 PHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE-----------NLKFWRVYDG  381 (401)
T ss_dssp             SSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS-----------EEEEEECCC-
T ss_pred             CCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC-----------cEEEEECCCC
Confidence            99999988  669999999999886544  45678999999999999999999998766           5889999876


Q ss_pred             ccccCCCCCC
Q 019384          329 EVKPKPKAYP  338 (342)
Q Consensus       329 ~~~~~~~~~~  338 (342)
                      ....+....+
T Consensus       382 ~~~~~~~~~~  391 (401)
T 4aez_A          382 DHVKRPIPIT  391 (401)
T ss_dssp             ----------
T ss_pred             cccccccccc
Confidence            6665554443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-33  Score=279.47  Aligned_cols=117  Identities=13%  Similarity=0.044  Sum_probs=100.4

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceee
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDI   95 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~   95 (342)
                      .+|.+.|++++|+|++++||+|+.||+|+|||..+........|...|.+++|+++..+++++.|++|++||+.+++...
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~   93 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLT   93 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEE
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEE
Confidence            46889999999999999999999999999999988776666678899999999994447899999999999998876432


Q ss_pred             cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCC
Q 019384           96 LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA  132 (342)
Q Consensus        96 ~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~  132 (342)
                      ...|...|++++|+|++++|++|+.|++|++||+++.
T Consensus        94 ~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~  130 (902)
T 2oaj_A           94 TVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD  130 (902)
T ss_dssp             EEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT
T ss_pred             EEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence            2236678999999999999999999999999998653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.1e-32  Score=255.15  Aligned_cols=284  Identities=19%  Similarity=0.251  Sum_probs=219.1

Q ss_pred             CCCCCC-eEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDG-ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~-V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~   93 (342)
                      .+|.+. +.++.|  ++++|++|+.||+|+|||+.+++.... .+|.+.|.+++|++++.+++++.|++|++|++.+++.
T Consensus       118 ~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~  195 (464)
T 3v7d_B          118 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCC  195 (464)
T ss_dssp             ECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEE
T ss_pred             cCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcE
Confidence            467776 466666  567999999999999999988775544 4799999999999888888999999999999988774


Q ss_pred             -eecccCCcceeEEEEe--CCCCEEEEeeCCCcEEEEcCCCCCCccee-------------------eeeecCCCCcEEE
Q 019384           94 -DILGKHDAPVRCIEYS--YAAGQVITGSWDKSLKCWDPRGASGQERT-------------------LVGTYPQPERVYS  151 (342)
Q Consensus        94 -~~~~~h~~~V~~~~~~--~~~~~l~sgs~D~~I~iWd~~~~~~~~~~-------------------~~~~~~~~~~v~~  151 (342)
                       ..+.+|...|.+++|+  +++..|++|+.|++|++||+++.......                   ......+...+.+
T Consensus       196 ~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  275 (464)
T 3v7d_B          196 THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT  275 (464)
T ss_dssp             EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEE
T ss_pred             EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEE
Confidence             4678899999999999  46788999999999999998764321100                   1111234456778


Q ss_pred             EeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceee
Q 019384          152 LSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFK  231 (342)
Q Consensus       152 ~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~  231 (342)
                      ++.+++.+++++.|+.|++||+++.+.....  ......+.+++++|++..+++++.|+.+.  +||......  ...+.
T Consensus       276 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~sg~~dg~i~--vwd~~~~~~--~~~~~  349 (464)
T 3v7d_B          276 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL--SGHTDRIYSTIYDHERKRCISASMDTTIR--IWDLENGEL--MYTLQ  349 (464)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEEETTTTEEEEEETTSCEE--EEETTTTEE--EEEEC
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcEEEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCcEE--EEECCCCcE--EEEEe
Confidence            8888999999999999999999876432211  22345688999999999999999999865  599865432  23334


Q ss_pred             eEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCC
Q 019384          232 CHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEG  311 (342)
Q Consensus       232 ~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~  311 (342)
                      +|.         .+|.+++|+  +.+|++|+.||+|++||..++...... .+...+..++|+|++++|++++ ++    
T Consensus       350 ~h~---------~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg----  412 (464)
T 3v7d_B          350 GHT---------ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-EN----  412 (464)
T ss_dssp             CCS---------SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TT----
T ss_pred             CCC---------CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CC----
Confidence            443         268899997  578999999999999999987665544 3566788999999999999987 33    


Q ss_pred             CCCCCCCcEEEEEccCCccc
Q 019384          312 DKPHEPDAIFVRSVNEIEVK  331 (342)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~  331 (342)
                             .|.+|+++.+...
T Consensus       413 -------~i~iwd~~~g~~~  425 (464)
T 3v7d_B          413 -------QFNIYNLRSGKLV  425 (464)
T ss_dssp             -------EEEEEETTTCCEE
T ss_pred             -------eEEEEECCCCcEE
Confidence                   3777877654433

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-33  Score=252.81  Aligned_cols=245  Identities=19%  Similarity=0.247  Sum_probs=170.6

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-------e-eeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEE
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-------V-LRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLV   87 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-------~-~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~   87 (342)
                      .|...|++|+|+|++++||+|+.|++|+|||+...       . +....+|.+.|.+++|+|++. +++|+.|++|++|+
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            38999999999999999999999999999998431       2 233457999999999997765 56999999999999


Q ss_pred             eccC-c----eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC----Ce
Q 019384           88 FSHG-K----EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG----NR  158 (342)
Q Consensus        88 ~~~~-~----~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~----~~  158 (342)
                      +... .    ...+.+|...|.+++|+|++.+|+||+.|++|++||.++........+.  .+...+.++.+++    ..
T Consensus       136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~  213 (330)
T 2hes_X          136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN--GHEGTVWSSDFDKTEGVFR  213 (330)
T ss_dssp             CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCSSSSCE
T ss_pred             ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc--CCCCcEEEEEecCCCCeeE
Confidence            9532 2    2356889999999999999999999999999999997643211112222  2344566655543    36


Q ss_pred             EEEEEcCCeEEEEeCCCCCCc-------ccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccc-cee
Q 019384          159 LVVATAGRHVNVYDLRNMSQP-------EQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK-YAF  230 (342)
Q Consensus       159 ~~~~s~d~~v~iwd~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~-~~~  230 (342)
                      +++++.|++|++||++.....       ...........+.++++++++ .+++++.|+.+.  +||......... ..+
T Consensus       214 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~--iw~~~~~~~~~~~~~~  290 (330)
T 2hes_X          214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLA--VYEEVDGEWKVFAKRA  290 (330)
T ss_dssp             EEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEE--EEEEETTEEEEEEEES
T ss_pred             EEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEE--EEEcCCCceEEEeccc
Confidence            899999999999998653211       001111134467888898654 788999999875  488643211000 001


Q ss_pred             eeEEecCCCCceeeeeeEEEEcC--CCCeEEEecCCCeEEEEeCCC
Q 019384          231 KCHRKSEAGRDIVYPVNAIAFHP--IYGTFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       231 ~~h~~~~~~~~~~~~v~~v~~sp--~~~~l~sgs~Dg~I~iWd~~~  274 (342)
                      .+|..        ..|++++|+|  ++.+|++|+.||+|+|||++.
T Consensus       291 ~~h~~--------~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          291 LCHGV--------YEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             CTTTT--------SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ccccc--------ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            11211        1589999999  688999999999999999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.9e-33  Score=247.97  Aligned_cols=272  Identities=15%  Similarity=0.165  Sum_probs=208.3

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC-ceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCcee-
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKED-   94 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~-~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~-   94 (342)
                      .+.+.|.+++|+|||+.++++..++.+.+|+... ........|.+.|.+++|++++.++.++.|+.+++|++.+.... 
T Consensus         7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCS
T ss_pred             ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCcee
Confidence            3456789999999999999988888777776544 34555668999999999998887765445999999999876521 


Q ss_pred             ---ec--ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEE--EeccCCeEEEEEcCCe
Q 019384           95 ---IL--GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYS--LSLVGNRLVVATAGRH  167 (342)
Q Consensus        95 ---~~--~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~--~s~~~~~~~~~s~d~~  167 (342)
                         .+  .+|...|.+++|+|+++.|++++.|+.|++||+++........+..  +...+.+  ++.+++.+++++.|+.
T Consensus        87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~  164 (337)
T 1gxr_A           87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS--SAPACYALAISPDSKVCFSCCSDGN  164 (337)
T ss_dssp             CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC--SSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeeccc--CCCceEEEEECCCCCEEEEEeCCCc
Confidence               22  2799999999999999999999999999999997654222222222  3334444  4456678999999999


Q ss_pred             EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384          168 VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN  247 (342)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  247 (342)
                      |++||+++.+....  .......+.+++++|++..+++++.++.+  ++||.+.......+   .|         ..++.
T Consensus       165 v~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i--~~~d~~~~~~~~~~---~~---------~~~v~  228 (337)
T 1gxr_A          165 IAVWDLHNQTLVRQ--FQGHTDGASCIDISNDGTKLWTGGLDNTV--RSWDLREGRQLQQH---DF---------TSQIF  228 (337)
T ss_dssp             EEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSEE--EEEETTTTEEEEEE---EC---------SSCEE
T ss_pred             EEEEeCCCCceeee--eecccCceEEEEECCCCCEEEEEecCCcE--EEEECCCCceEeee---cC---------CCceE
Confidence            99999987633221  12234567899999999999999999976  46998654322111   11         12588


Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          248 AIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       248 ~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      +++|+|++++|++++.|+.|++||.++++. ..+..|...|.+++|+||+++|++++.++
T Consensus       229 ~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  287 (337)
T 1gxr_A          229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDN  287 (337)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCC
Confidence            999999999999999999999999998764 45678999999999999999999998654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6e-33  Score=251.79  Aligned_cols=239  Identities=18%  Similarity=0.268  Sum_probs=186.1

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-------eeeeeeecCCceEEEEEeCCC-CeEEEecCCcEEEEE
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-------VLRGEFMHGGPVLDCCFHDDS-SGFSASADHTVRRLV   87 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-------~~~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~i~~w~   87 (342)
                      ..|...|.+++|+|++.+|++|+.|+++++|++...       .......|.+.|.++.|++++ .+++++.|++|++||
T Consensus       103 ~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd  182 (354)
T 2pbi_B          103 TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWD  182 (354)
T ss_dssp             ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEe
Confidence            456788999999999999999999999999998532       234445799999999998766 567999999999999


Q ss_pred             eccCce-eecccCCcceeEEEEeC--CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEE--EeccCCeEEEE
Q 019384           88 FSHGKE-DILGKHDAPVRCIEYSY--AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYS--LSLVGNRLVVA  162 (342)
Q Consensus        88 ~~~~~~-~~~~~h~~~V~~~~~~~--~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~--~s~~~~~~~~~  162 (342)
                      +.+++. ..+.+|...|.+++|+|  ++..|++|+.|++|++||++++..  ...+..  +...+.+  ++++++.++++
T Consensus       183 ~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~--~~~~~~--h~~~v~~v~~~p~~~~l~s~  258 (354)
T 2pbi_B          183 VESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC--VQAFET--HESDVNSVRYYPSGDAFASG  258 (354)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE--EEEECC--CSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE--EEEecC--CCCCeEEEEEeCCCCEEEEE
Confidence            988874 56789999999999987  467999999999999999986432  222322  3344544  44567799999


Q ss_pred             EcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCce
Q 019384          163 TAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDI  242 (342)
Q Consensus       163 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~  242 (342)
                      +.|++|++||++................+.+++++|++..+++++.|+.+.  +||......  ...+.+|.        
T Consensus       259 s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~--vwd~~~~~~--~~~l~~h~--------  326 (354)
T 2pbi_B          259 SDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN--VWDVLKGSR--VSILFGHE--------  326 (354)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEE--EEETTTCSE--EEEECCCS--------
T ss_pred             eCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEE--EEECCCCce--EEEEECCC--------
Confidence            999999999998753221111112223467899999999999999999875  599854322  22334443        


Q ss_pred             eeeeeEEEEcCCCCeEEEecCCCeEEEEe
Q 019384          243 VYPVNAIAFHPIYGTFATGGCDGFVNVWD  271 (342)
Q Consensus       243 ~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd  271 (342)
                       .+|.+++|+|++.+|++|+.||+|+||+
T Consensus       327 -~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          327 -NRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             -SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             -CcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence             3699999999999999999999999996

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=249.60  Aligned_cols=245  Identities=18%  Similarity=0.242  Sum_probs=187.6

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC--cee-eeeeecCCceEEEEEeC---CCCeEEEecCCcEEEEEec
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA--NVL-RGEFMHGGPVLDCCFHD---DSSGFSASADHTVRRLVFS   89 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~--~~~-~~~~~h~~~V~~~~~~~---~~~~~s~s~D~~i~~w~~~   89 (342)
                      +.|.+.|++++|+|++++||+|+.||+|+|||+..  ... .....|.+.|.+++|++   +..+++++.|+.|++|++.
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   87 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE   87 (379)
T ss_dssp             EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE
T ss_pred             cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC
Confidence            67999999999999999999999999999999973  333 34457999999999974   3456799999999999999


Q ss_pred             cCc---eeecccCCcceeEEEEeCC--CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---------
Q 019384           90 HGK---EDILGKHDAPVRCIEYSYA--AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---------  155 (342)
Q Consensus        90 ~~~---~~~~~~h~~~V~~~~~~~~--~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---------  155 (342)
                      +++   ...+..|...|.+++|+|+  +..|++++.|++|++||++.........+..  +...+.++.+.         
T Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~  165 (379)
T 3jrp_A           88 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA--HAIGVNSASWAPATIEEDGE  165 (379)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC--CTTCEEEEEECCCC------
T ss_pred             CCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC--CCCceEEEEEcCcccccccc
Confidence            875   3456789999999999999  8999999999999999998653322222222  33445555543         


Q ss_pred             ------CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccce
Q 019384          156 ------GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA  229 (342)
Q Consensus       156 ------~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~  229 (342)
                            ++.+++++.|+.|++||+++.....           ..                                 ...
T Consensus       166 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----------~~---------------------------------~~~  201 (379)
T 3jrp_A          166 HNGTKESRKFVTGGADNLVKIWKYNSDAQTY-----------VL---------------------------------EST  201 (379)
T ss_dssp             ----CTTCEEEEEETTSCEEEEEEETTTTEE-----------EE---------------------------------EEE
T ss_pred             ccCCCCCCEEEEEeCCCeEEEEEecCCCcce-----------ee---------------------------------EEE
Confidence                  4577888888888888876532100           00                                 001


Q ss_pred             eeeEEecCCCCceeeeeeEEEEcCC---CCeEEEecCCCeEEEEeCCCce-----eeeccCCCCcceEEEEECCCCCEEE
Q 019384          230 FKCHRKSEAGRDIVYPVNAIAFHPI---YGTFATGGCDGFVNVWDGNNKK-----RLYQYSKYPTSIAALSFSRDGRLLA  301 (342)
Q Consensus       230 ~~~h~~~~~~~~~~~~v~~v~~sp~---~~~l~sgs~Dg~I~iWd~~~~~-----~~~~~~~~~~~V~~v~~spdg~~la  301 (342)
                      +..|.         .+|.+++|+|+   +.+|++++.||+|++||++++.     .+.....|...|++++|+|||++|+
T Consensus       202 ~~~h~---------~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  272 (379)
T 3jrp_A          202 LEGHS---------DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA  272 (379)
T ss_dssp             ECCCS---------SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred             Eeccc---------CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEE
Confidence            11222         25899999999   8999999999999999998752     3334456889999999999999999


Q ss_pred             EEEeccccCCCCCCCCCcEEEEEcc
Q 019384          302 VASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       302 s~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                      +++.++           .|.+|++.
T Consensus       273 ~~~~dg-----------~i~iw~~~  286 (379)
T 3jrp_A          273 LSGGDN-----------KVTLWKEN  286 (379)
T ss_dssp             EEESSS-----------SEEEEEEE
T ss_pred             EecCCC-----------cEEEEeCC
Confidence            998755           47777765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.5e-33  Score=256.62  Aligned_cols=251  Identities=16%  Similarity=0.167  Sum_probs=188.5

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce--------eeeeeecCCceEEEEEeCC--CCeEEEecCCcEEE
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV--------LRGEFMHGGPVLDCCFHDD--SSGFSASADHTVRR   85 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~--------~~~~~~h~~~V~~~~~~~~--~~~~s~s~D~~i~~   85 (342)
                      ..|...|.+++|+|++++||+|+.|++++|||+....        .....+|.+.|.++.|.++  ..+++|+.|++|++
T Consensus       105 ~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~  184 (380)
T 3iz6_a          105 KLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVL  184 (380)
T ss_dssp             ECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEE
T ss_pred             ecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEE
Confidence            4678899999999999999999999999999986421        2334579999999999864  35789999999999


Q ss_pred             EEeccCcee-ec-----ccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCe
Q 019384           86 LVFSHGKED-IL-----GKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR  158 (342)
Q Consensus        86 w~~~~~~~~-~~-----~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~  158 (342)
                      ||+.++... .+     .+|...|.+++|++ ++..|++|+.|++|++||++..... ...+..+......+.++++++.
T Consensus       185 wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~-~~~~~~h~~~v~~v~~~p~~~~  263 (380)
T 3iz6_a          185 WDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA-VRTYHGHEGDINSVKFFPDGQR  263 (380)
T ss_dssp             ECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC-CEEECCCSSCCCEEEECTTSSE
T ss_pred             EEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc-eEEECCcCCCeEEEEEecCCCe
Confidence            999887743 22     57999999999987 7789999999999999999743221 2223334444445566667789


Q ss_pred             EEEEEcCCeEEEEeCCCCCCcccccccc-----cceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeE
Q 019384          159 LVVATAGRHVNVYDLRNMSQPEQRRESS-----LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH  233 (342)
Q Consensus       159 ~~~~s~d~~v~iwd~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h  233 (342)
                      +++++.|++|++||++++..........     ....+.+++++|++..+++++.++.+.  +||........  .+.  
T Consensus       264 l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~--vwd~~~~~~~~--~~~--  337 (380)
T 3iz6_a          264 FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCY--VWDTLLAEMVL--NLG--  337 (380)
T ss_dssp             EEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEE--EEETTTCCEEE--EEC--
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEE--EEECCCCceEE--EEe--
Confidence            9999999999999998764321111100     011257899999999999999999865  59975432211  110  


Q ss_pred             EecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCce
Q 019384          234 RKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKK  276 (342)
Q Consensus       234 ~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~  276 (342)
                         .....|...|++++|+|+|.+|++|+.||+|+||++...+
T Consensus       338 ---~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          338 ---TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             ---CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             ---cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence               0001233479999999999999999999999999987643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-32  Score=275.25  Aligned_cols=277  Identities=14%  Similarity=0.138  Sum_probs=201.0

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee------------eeeecCCceEEEEEeCC--CCeEEEecCCcE
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR------------GEFMHGGPVLDCCFHDD--SSGFSASADHTV   83 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~------------~~~~h~~~V~~~~~~~~--~~~~s~s~D~~i   83 (342)
                      |...|++++|+|++++|++|+.||+|++||+.++.+.            ...+|.+.|.+++|+|+  ..+++++.|+.+
T Consensus        97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v  176 (902)
T 2oaj_A           97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL  176 (902)
T ss_dssp             CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE
T ss_pred             CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE
Confidence            5578999999999999999999999999999887643            12458899999999975  356799999999


Q ss_pred             EEEEeccCce-eeccc------------------CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcc--------
Q 019384           84 RRLVFSHGKE-DILGK------------------HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQE--------  136 (342)
Q Consensus        84 ~~w~~~~~~~-~~~~~------------------h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~--------  136 (342)
                       +||+.+++. ..+..                  |...|++++|+|++.+|+||+.|++|++||++++....        
T Consensus       177 -lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~  255 (902)
T 2oaj_A          177 -TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETE  255 (902)
T ss_dssp             -EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSC
T ss_pred             -EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccc
Confidence             999988763 23333                  46789999999999999999999999999986432100        


Q ss_pred             ---------------e-----------------eee--eecC--------------------------------------
Q 019384          137 ---------------R-----------------TLV--GTYP--------------------------------------  144 (342)
Q Consensus       137 ---------------~-----------------~~~--~~~~--------------------------------------  144 (342)
                                     .                 ..+  ....                                      
T Consensus       256 ~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  335 (902)
T 2oaj_A          256 INVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMK  335 (902)
T ss_dssp             TTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEE
T ss_pred             cCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceE
Confidence                           0                 000  0000                                      


Q ss_pred             -----CC-------------------------------CcEEEE------------------------------------
Q 019384          145 -----QP-------------------------------ERVYSL------------------------------------  152 (342)
Q Consensus       145 -----~~-------------------------------~~v~~~------------------------------------  152 (342)
                           ..                               ..+..+                                    
T Consensus       336 ~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~  415 (902)
T 2oaj_A          336 IFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNK  415 (902)
T ss_dssp             EECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHH
T ss_pred             EEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHH
Confidence                 00                               000000                                    


Q ss_pred             ----------------------------eccCCeEEEEEcCCeEEEEeCCCCCCcccc-cc--------cccceeeEEEE
Q 019384          153 ----------------------------SLVGNRLVVATAGRHVNVYDLRNMSQPEQR-RE--------SSLKYQTRCVR  195 (342)
Q Consensus       153 ----------------------------s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~-~~--------~~~~~~~~~v~  195 (342)
                                                  +.+++.+++++.|++|++||+.++...... ..        ......+.+++
T Consensus       416 ~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sva  495 (902)
T 2oaj_A          416 LWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKIS  495 (902)
T ss_dssp             HHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEE
T ss_pred             HHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEE
Confidence                                        112336788899999999998776321100 00        02334688999


Q ss_pred             EeeCCceEEEEccCCeEEEEEeechhhhh----------c---------------------------------ccceeee
Q 019384          196 CYPNGTGYALSSVEGRVAMEFFDLSEASQ----------A---------------------------------KKYAFKC  232 (342)
Q Consensus       196 ~~~~~~~~~~~s~~~~~~i~~~d~~~~~~----------~---------------------------------~~~~~~~  232 (342)
                      |+|+++.+++++.|+++++  ||+.....          .                                 ....+. 
T Consensus       496 fspdg~~LAsgs~DgtV~l--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-  572 (902)
T 2oaj_A          496 FAAETLELAVSIETGDVVL--FKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH-  572 (902)
T ss_dssp             EETTTTEEEEEETTSCEEE--EEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC-
T ss_pred             ecCCCCeEEEEecCcEEEE--EEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEE-
Confidence            9999999999999998865  66543210          0                                 001111 


Q ss_pred             EEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceee-----eccC-CCCcceEEEEEC-----CCC---C
Q 019384          233 HRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRL-----YQYS-KYPTSIAALSFS-----RDG---R  298 (342)
Q Consensus       233 h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~-----~~~~-~~~~~V~~v~~s-----pdg---~  298 (342)
                              .|..+|++|+|+|+| +||+|+.|++|+|||++++..+     ..+. +|.+.|++|+||     |||   +
T Consensus       573 --------~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~  643 (902)
T 2oaj_A          573 --------ANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSI  643 (902)
T ss_dssp             --------CCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEE
T ss_pred             --------cCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcce
Confidence                    234479999999999 9999999999999999887654     2454 899999999999     886   8


Q ss_pred             EEEEEEecc
Q 019384          299 LLAVASSYT  307 (342)
Q Consensus       299 ~las~s~~~  307 (342)
                      +|++|+.+.
T Consensus       644 ~l~sgs~D~  652 (902)
T 2oaj_A          644 LMVCGTDMG  652 (902)
T ss_dssp             EEEEEETTS
T ss_pred             EEEEEecCC
Confidence            999998765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.5e-32  Score=253.23  Aligned_cols=275  Identities=19%  Similarity=0.257  Sum_probs=212.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce-
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~-   93 (342)
                      ..|...|++++|  ++++|++|+.||+|+|||+.+++... ..+|.+.|.+++| ++..+++|+.|++|++|++.+++. 
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~  206 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEML  206 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCCcEE
Confidence            567788999987  78999999999999999998876544 4579999999999 555678999999999999988774 


Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeC
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDL  173 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~  173 (342)
                      ..+.+|...|.+++|+  ++.|++|+.|++|++||+++...... ......+...+.++.++++.+++++.|+.|++||+
T Consensus       207 ~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~  283 (435)
T 1p22_A          207 NTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITL-RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNT  283 (435)
T ss_dssp             EEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEE-EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred             EEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCcee-eeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEEC
Confidence            4677899999999997  46999999999999999976443211 11122345567788888999999999999999999


Q ss_pred             CCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcC
Q 019384          174 RNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP  253 (342)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  253 (342)
                      ++.......  ......+.++.+  ++..+++++.|+.+.  +||.+....  ...+.+|.         .+|.+++|  
T Consensus       284 ~~~~~~~~~--~~~~~~v~~~~~--~~~~l~~g~~dg~i~--iwd~~~~~~--~~~~~~h~---------~~v~~~~~--  344 (435)
T 1p22_A          284 STCEFVRTL--NGHKRGIACLQY--RDRLVVSGSSDNTIR--LWDIECGAC--LRVLEGHE---------ELVRCIRF--  344 (435)
T ss_dssp             TTCCEEEEE--ECCSSCEEEEEE--ETTEEEEEETTSCEE--EEETTTCCE--EEEECCCS---------SCEEEEEC--
T ss_pred             CcCcEEEEE--cCCCCcEEEEEe--CCCEEEEEeCCCeEE--EEECCCCCE--EEEEeCCc---------CcEEEEEe--
Confidence            886433221  122334666666  567899999999875  599865322  22333343         26889988  


Q ss_pred             CCCeEEEecCCCeEEEEeCCCce---------eeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEE
Q 019384          254 IYGTFATGGCDGFVNVWDGNNKK---------RLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRS  324 (342)
Q Consensus       254 ~~~~l~sgs~Dg~I~iWd~~~~~---------~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~  324 (342)
                      ++.+|++|+.||+|++||+.++.         ++..+.+|...|.+++|  |+++|++++.++           .|.+|+
T Consensus       345 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg-----------~i~iwd  411 (435)
T 1p22_A          345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD-----------TILIWD  411 (435)
T ss_dssp             CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS-----------EEEEEC
T ss_pred             cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCC-----------EEEEEE
Confidence            78899999999999999987654         67788999999999999  889999988766           599998


Q ss_pred             ccCC
Q 019384          325 VNEI  328 (342)
Q Consensus       325 ~~~~  328 (342)
                      +...
T Consensus       412 ~~~~  415 (435)
T 1p22_A          412 FLND  415 (435)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            8654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.5e-32  Score=283.60  Aligned_cols=285  Identities=19%  Similarity=0.267  Sum_probs=221.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~   93 (342)
                      .+|.+.|++++|+|++++||+|+.||+|+|||+.++... ...+|.+.|.+++|++++. +++++.|+.|++||+.+++.
T Consensus       612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~  691 (1249)
T 3sfz_A          612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL  691 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             ecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce
Confidence            478999999999999999999999999999999887644 4457999999999997765 56899999999999998873


Q ss_pred             -eecccCCcceeEEEEeCC--CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEE
Q 019384           94 -DILGKHDAPVRCIEYSYA--AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNV  170 (342)
Q Consensus        94 -~~~~~h~~~V~~~~~~~~--~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~i  170 (342)
                       ..+.+|...|.+++|+|+  +..+++|+.|++|++||++++..  ...+..+......+.++.+++.+++++.|++|++
T Consensus       692 ~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~--~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v  769 (1249)
T 3sfz_A          692 VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC--RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL  769 (1249)
T ss_dssp             EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE--EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred             EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch--hheecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence             467899999999999994  45889999999999999976432  2223333333333445556779999999999999


Q ss_pred             EeCCCCCCccccc-----------ccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCC
Q 019384          171 YDLRNMSQPEQRR-----------ESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAG  239 (342)
Q Consensus       171 wd~~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~  239 (342)
                      ||+++........           .......+.+++++|++..+++++ ++.  +.+||.......... ...|      
T Consensus       770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~--v~~~d~~~~~~~~~~-~~~~------  839 (1249)
T 3sfz_A          770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNK--VLLFDIHTSGLLAEI-HTGH------  839 (1249)
T ss_dssp             EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTE--EEEEETTTCCEEEEE-ECSS------
T ss_pred             EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCc--EEEEEecCCCceeEE-cCCC------
Confidence            9998653211110           001112456788999999888877 454  456988644322111 1122      


Q ss_pred             CceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCc
Q 019384          240 RDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDA  319 (342)
Q Consensus       240 ~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~  319 (342)
                         ...|.+++|+|++.++++|+.||+|++||..++..+..+.+|...|.+++|+|||++|++++.+.           .
T Consensus       840 ---~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg-----------~  905 (1249)
T 3sfz_A          840 ---HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQ-----------T  905 (1249)
T ss_dssp             ---SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----------C
T ss_pred             ---CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCC-----------e
Confidence               23689999999999999999999999999999999999999999999999999999999998765           4


Q ss_pred             EEEEEcc
Q 019384          320 IFVRSVN  326 (342)
Q Consensus       320 ~~~~~~~  326 (342)
                      +.+|++.
T Consensus       906 v~vw~~~  912 (1249)
T 3sfz_A          906 IRVWETK  912 (1249)
T ss_dssp             EEEEEHH
T ss_pred             EEEEEcc
Confidence            6677654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=8e-32  Score=240.87  Aligned_cols=263  Identities=13%  Similarity=0.121  Sum_probs=188.6

Q ss_pred             CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc----ee-eeeeecCCceEEEEEeC---CCCeEEEecCCcEEE
Q 019384           14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN----VL-RGEFMHGGPVLDCCFHD---DSSGFSASADHTVRR   85 (342)
Q Consensus        14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~----~~-~~~~~h~~~V~~~~~~~---~~~~~s~s~D~~i~~   85 (342)
                      +..+|.+.|++++|+|++++||+|+.||+|+|||+.++    .+ .....|.+.|.+++|++   +..+++++.|+.|++
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            34689999999999999999999999999999999764    22 33457999999999986   445679999999999


Q ss_pred             EEeccCc----------eeecccCCcceeEEEEeCC--CCEEEEeeCCCcEEEEcCCCCCCcceeee---------eecC
Q 019384           86 LVFSHGK----------EDILGKHDAPVRCIEYSYA--AGQVITGSWDKSLKCWDPRGASGQERTLV---------GTYP  144 (342)
Q Consensus        86 w~~~~~~----------~~~~~~h~~~V~~~~~~~~--~~~l~sgs~D~~I~iWd~~~~~~~~~~~~---------~~~~  144 (342)
                      |++..+.          ...+..|...|.+++|+|+  +.+|++++.|++|++||+++.........         ....
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  165 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN  165 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence            9998753          3356789999999999999  99999999999999999876543211110         0001


Q ss_pred             CCCcEEE--Eecc---CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCC----ceEEEEccCCeEEEE
Q 019384          145 QPERVYS--LSLV---GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNG----TGYALSSVEGRVAME  215 (342)
Q Consensus       145 ~~~~v~~--~s~~---~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~s~~~~~~i~  215 (342)
                      +...+.+  ++++   ++.+++++.++.+.+|+..................+.+++++|++    ..+++++.|+.+.  
T Consensus       166 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~--  243 (351)
T 3f3f_A          166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR--  243 (351)
T ss_dssp             CSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE--
T ss_pred             cccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE--
Confidence            2223344  4443   668999999999988887665322122222344568899999998    7899999999875  


Q ss_pred             Eeechhhhhcccc-----------------------------------eeeeEEecCCCCceeeeeeEEEEcCCCCeEEE
Q 019384          216 FFDLSEASQAKKY-----------------------------------AFKCHRKSEAGRDIVYPVNAIAFHPIYGTFAT  260 (342)
Q Consensus       216 ~~d~~~~~~~~~~-----------------------------------~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~s  260 (342)
                      +||.+........                                   .............+..+|++++|+|++++|++
T Consensus       244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s  323 (351)
T 3f3f_A          244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS  323 (351)
T ss_dssp             EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred             EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence            5887542110000                                   00000000000123347999999999999999


Q ss_pred             ecCCCeEEEEeCCCceee
Q 019384          261 GGCDGFVNVWDGNNKKRL  278 (342)
Q Consensus       261 gs~Dg~I~iWd~~~~~~~  278 (342)
                      |+.||.|+|||+.+++.+
T Consensus       324 ~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          324 AGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             EETTSCEEEEEECTTSCE
T ss_pred             ecCCCcEEEEecCcCcch
Confidence            999999999999876543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.1e-31  Score=255.27  Aligned_cols=296  Identities=14%  Similarity=0.132  Sum_probs=210.2

Q ss_pred             CCCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEECCCceeeee-eecCC---ceEEEEEeCC-CC-eEEEecCCcEEEEEe
Q 019384           16 NPPSDGISNLRFSNHSD-HLLVSSWDKSVRLYDASANVLRGE-FMHGG---PVLDCCFHDD-SS-GFSASADHTVRRLVF   88 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~-~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~---~V~~~~~~~~-~~-~~s~s~D~~i~~w~~   88 (342)
                      ..|...|++++|+|+++ +|++++.|++|++||+..++.... ..|.+   .|.+++|+++ +. +++++.|+.|++|++
T Consensus       157 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~  236 (615)
T 1pgu_A          157 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG  236 (615)
T ss_dssp             CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred             ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence            56889999999999998 799999999999999988765544 46888   9999999977 65 568999999999999


Q ss_pred             ccCcee-ec-c---cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC--CCCcEEEEec-cCCeEE
Q 019384           89 SHGKED-IL-G---KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP--QPERVYSLSL-VGNRLV  160 (342)
Q Consensus        89 ~~~~~~-~~-~---~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~v~~~s~-~~~~~~  160 (342)
                      .+++.. .+ .   .|...|.+++|+ +++.|++++.|++|++||+++...  ...+....  ....+..+.+ +++.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~  313 (615)
T 1pgu_A          237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC--VQKWTLDKQQLGNQQVGVVATGNGRII  313 (615)
T ss_dssp             TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE--EEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred             CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE--EEEEcCCCCcccCceeEEEeCCCCeEE
Confidence            887743 44 4   899999999999 999999999999999999975432  11122110  1122333333 667888


Q ss_pred             EEEcCCeEEEEeCCCCCCcccccc-------------------------------cccceeeEEEEEeeCCceEEEEccC
Q 019384          161 VATAGRHVNVYDLRNMSQPEQRRE-------------------------------SSLKYQTRCVRCYPNGTGYALSSVE  209 (342)
Q Consensus       161 ~~s~d~~v~iwd~~~~~~~~~~~~-------------------------------~~~~~~~~~v~~~~~~~~~~~~s~~  209 (342)
                      +++.++.|++||+.+.........                               ......+.++++ +++..+++++.+
T Consensus       314 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d  392 (615)
T 1pgu_A          314 SLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWD  392 (615)
T ss_dssp             EEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETT
T ss_pred             EEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCC
Confidence            888888899998875321110000                               011122344444 335556666666


Q ss_pred             CeEEEEEeechhhh---------------------------------------------------------------hcc
Q 019384          210 GRVAMEFFDLSEAS---------------------------------------------------------------QAK  226 (342)
Q Consensus       210 ~~~~i~~~d~~~~~---------------------------------------------------------------~~~  226 (342)
                      +.+.  +||.....                                                               ..+
T Consensus       393 ~~i~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~  470 (615)
T 1pgu_A          393 DTLK--VNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ  470 (615)
T ss_dssp             TEEE--ETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred             CCEE--EEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEE
Confidence            6543  35543210                                                               000


Q ss_pred             cceeeeEEec-CCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCC-CCcceEEEEECC---------
Q 019384          227 KYAFKCHRKS-EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSK-YPTSIAALSFSR---------  295 (342)
Q Consensus       227 ~~~~~~h~~~-~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~-~~~~V~~v~~sp---------  295 (342)
                      .|.+...... .....+..+|.+++|+|++++|++|+.||.|++||+++++.+..+.+ |...|.+++|+|         
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~  550 (615)
T 1pgu_A          471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE  550 (615)
T ss_dssp             EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------C
T ss_pred             EEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccc
Confidence            0000000000 01122345799999999999999999999999999999999998888 999999999999         


Q ss_pred             -CCCEEEEEEeccccCCCCCCCCCcEEEEEccCC
Q 019384          296 -DGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEI  328 (342)
Q Consensus       296 -dg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~  328 (342)
                       |+++||+++.+.           .|.+|+++..
T Consensus       551 ~~~~~l~~~~~dg-----------~i~iw~~~~~  573 (615)
T 1pgu_A          551 IEEDLVATGSLDT-----------NIFIYSVKRP  573 (615)
T ss_dssp             CSCCEEEEEETTS-----------CEEEEESSCT
T ss_pred             cCCCEEEEEcCCC-----------cEEEEECCCC
Confidence             999999998765           5778877643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3e-31  Score=247.49  Aligned_cols=279  Identities=19%  Similarity=0.284  Sum_probs=214.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce-
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~-   93 (342)
                      ..|...|++++|+  +++|++|+.||+|++||+.+++... ..+|.+.|.++.|. +..+++++.|+.+++|++.+++. 
T Consensus       156 ~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~  232 (445)
T 2ovr_B          156 VGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETGQCL  232 (445)
T ss_dssp             CCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEESSSCCEE
T ss_pred             cCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec-CCEEEEEeCCCEEEEEECCCCcEE
Confidence            5788999999998  5699999999999999998876544 45799999999996 44678999999999999988773 


Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeC
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDL  173 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~  173 (342)
                      ..+.+|...|.+++|  +++.|++|+.|++|++||+++...  ...+.  .+...+.++.+++..+++++.|+.|++||+
T Consensus       233 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~--~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~  306 (445)
T 2ovr_B          233 HVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETC--LHTLQ--GHTNRVYSLQFDGIHVVSGSLDTSIRVWDV  306 (445)
T ss_dssp             EEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEE--EEEEC--CCSSCEEEEEECSSEEEEEETTSCEEEEET
T ss_pred             EEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcE--eEEec--CCCCceEEEEECCCEEEEEeCCCeEEEEEC
Confidence            467789999999998  678999999999999999875322  11122  244567788888899999999999999999


Q ss_pred             CCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcC
Q 019384          174 RNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP  253 (342)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  253 (342)
                      ++++.....  ......+.++.  +++..+++++.|+.+.  +||.......  ..+..+      ..+..+|.+++|+ 
T Consensus       307 ~~~~~~~~~--~~~~~~v~~~~--~~~~~l~~~~~dg~i~--vwd~~~~~~~--~~~~~~------~~~~~~v~~~~~~-  371 (445)
T 2ovr_B          307 ETGNCIHTL--TGHQSLTSGME--LKDNILVSGNADSTVK--IWDIKTGQCL--QTLQGP------NKHQSAVTCLQFN-  371 (445)
T ss_dssp             TTCCEEEEE--CCCCSCEEEEE--EETTEEEEEETTSCEE--EEETTTCCEE--EEECST------TSCSSCEEEEEEC-
T ss_pred             CCCCEEEEE--cCCcccEEEEE--EeCCEEEEEeCCCeEE--EEECCCCcEE--EEEccC------CCCCCCEEEEEEC-
Confidence            886433221  11222344444  4677899999999865  5998543222  122221      1123368999995 


Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeecc-----CCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384          254 IYGTFATGGCDGFVNVWDGNNKKRLYQY-----SKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       254 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~-----~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                       +.+|++|+.||+|++||..+++.+..+     .+|.+.|++++|+|+|.+||+|+.++.+...       +++++.+
T Consensus       372 -~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~-------l~v~df~  441 (445)
T 2ovr_B          372 -KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK-------LLVLDFD  441 (445)
T ss_dssp             -SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCE-------EEEEECC
T ss_pred             -CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccE-------EEEEECC
Confidence             579999999999999999998887766     4678899999999999999999888744443       8888764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-31  Score=246.29  Aligned_cols=241  Identities=20%  Similarity=0.248  Sum_probs=180.8

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCceeec
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKEDIL   96 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~   96 (342)
                      ...|++++|+|++++||+|+.|++|+|||+.+++... ..+|.+.|.+++|++++. +++++.|+++++||+.+++....
T Consensus       123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~  202 (393)
T 1erj_A          123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT  202 (393)
T ss_dssp             CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEE
Confidence            3459999999999999999999999999998876544 457999999999997665 57999999999999998875544


Q ss_pred             ccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCCCCcceeeeee-----cCCCCcEEEEe--ccCCeEEEEEcCCeE
Q 019384           97 GKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERTLVGT-----YPQPERVYSLS--LVGNRLVVATAGRHV  168 (342)
Q Consensus        97 ~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~-----~~~~~~v~~~s--~~~~~~~~~s~d~~v  168 (342)
                      ..|...|.+++|+| ++.+|++|+.|++|++||++++...  ..+..     ..+...+.++.  .++..+++++.|++|
T Consensus       203 ~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~--~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v  280 (393)
T 1erj_A          203 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV--ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV  280 (393)
T ss_dssp             EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEE--EEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEE--EeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence            45677899999999 8899999999999999998764321  11110     12334455554  456789999999999


Q ss_pred             EEEeCCCCCCccc----------ccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384          169 NVYDLRNMSQPEQ----------RRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA  238 (342)
Q Consensus       169 ~iwd~~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~  238 (342)
                      ++||+++......          .....+...+.+++++|++..+++++.|+.+  ++||......  ...+.+|..   
T Consensus       281 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v--~iwd~~~~~~--~~~l~~h~~---  353 (393)
T 1erj_A          281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV--LFWDKKSGNP--LLMLQGHRN---  353 (393)
T ss_dssp             EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEE--EEEETTTCCE--EEEEECCSS---
T ss_pred             EEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeE--EEEECCCCeE--EEEECCCCC---
Confidence            9999986432110          0011223346789999999999999999976  4699864322  234455543   


Q ss_pred             CCceeeeeeEEEEcC------CCCeEEEecCCCeEEEEeCCC
Q 019384          239 GRDIVYPVNAIAFHP------IYGTFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       239 ~~~~~~~v~~v~~sp------~~~~l~sgs~Dg~I~iWd~~~  274 (342)
                            .|.+++|+|      ++.+|++|+.||+|+||+.+.
T Consensus       354 ------~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          354 ------SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             ------CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             ------CEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence                  588999876      678999999999999999754

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.1e-32  Score=244.31  Aligned_cols=248  Identities=15%  Similarity=0.206  Sum_probs=176.9

Q ss_pred             eecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCce---eecccCCcceeEEEEeC--CCCEEEEeeCCCcEEEEcCC
Q 019384           57 FMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKE---DILGKHDAPVRCIEYSY--AAGQVITGSWDKSLKCWDPR  130 (342)
Q Consensus        57 ~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~---~~~~~h~~~V~~~~~~~--~~~~l~sgs~D~~I~iWd~~  130 (342)
                      .+|.+.|.+++|++++. +++|+.|++|++|++.++..   ..+.+|...|++++|++  ++++|+||+.|++|++||++
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~   89 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE   89 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred             ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence            46999999999987655 57999999999999987642   35789999999999986  47899999999999999997


Q ss_pred             CCCCcceeeeeecCCCCcEEEEecc--CCeEEEEEcCCeEEEEeCCCCCCcc-cccccccceeeEEEEEeeC--------
Q 019384          131 GASGQERTLVGTYPQPERVYSLSLV--GNRLVVATAGRHVNVYDLRNMSQPE-QRRESSLKYQTRCVRCYPN--------  199 (342)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~d~~v~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~--------  199 (342)
                      ++.......+..+......++++++  +..+++++.|++|++||++...... ..........+.+++++|+        
T Consensus        90 ~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  169 (316)
T 3bg1_A           90 NGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID  169 (316)
T ss_dssp             SSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-----
T ss_pred             CCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccc
Confidence            5432221222223333334445554  4579999999999999998642211 1111122334667788886        


Q ss_pred             ---------CceEEEEccCCeEEEEEeechhhhh-cccceeeeEEecCCCCceeeeeeEEEEcCCC----CeEEEecCCC
Q 019384          200 ---------GTGYALSSVEGRVAMEFFDLSEASQ-AKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY----GTFATGGCDG  265 (342)
Q Consensus       200 ---------~~~~~~~s~~~~~~i~~~d~~~~~~-~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~----~~l~sgs~Dg  265 (342)
                               +..+++++.|+.++  +||...... .....+.+|.         .+|.+++|+|++    .+|++|+.|+
T Consensus       170 ~~~~~~~~~~~~l~sgs~D~~v~--lWd~~~~~~~~~~~~l~~h~---------~~V~~v~~sp~~~~~~~~las~s~D~  238 (316)
T 3bg1_A          170 HPSGQKPNYIKRFASGGCDNLIK--LWKEEEDGQWKEEQKLEAHS---------DWVRDVAWAPSIGLPTSTIASCSQDG  238 (316)
T ss_dssp             -CCSCCCCCCCBEECCBTTSBCC--EEEECTTSCEEEEECCBCCS---------SCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred             cccccCccccceEEEecCCCeEE--EEEeCCCCccceeeecccCC---------CceEEEEecCCCCCCCceEEEEcCCC
Confidence                     36789999999875  588753211 1122334443         369999999987    7899999999


Q ss_pred             eEEEEeCCCc---e-eeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384          266 FVNVWDGNNK---K-RLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       266 ~I~iWd~~~~---~-~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                      +|+|||.++.   . ....+.+|...|++++|+|||++||+++.+.           .|.+|+..
T Consensus       239 ~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~-----------~v~lw~~~  292 (316)
T 3bg1_A          239 RVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN-----------KVTLWKES  292 (316)
T ss_dssp             EEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS-----------CEEEEEEC
T ss_pred             eEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC-----------eEEEEEEC
Confidence            9999998762   1 1233456888999999999999999998766           47778764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.5e-31  Score=245.42  Aligned_cols=260  Identities=15%  Similarity=0.177  Sum_probs=187.0

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc--
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK--   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~--   92 (342)
                      ..|.+.|++|+|+|+|++||+|+.||+|+|||+.+++.. ...+|...|.++.+. +..+++++.|+.+++|+.....  
T Consensus       144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~-~~~l~sgs~d~~i~~~d~~~~~~~  222 (420)
T 4gga_A          144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHH  222 (420)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCE
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC-CCEEEEEeCCCceeEeeeccccee
Confidence            467889999999999999999999999999999887654 456799999998885 3456799999999999987765  


Q ss_pred             eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---CCeEEEE--EcCCe
Q 019384           93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---GNRLVVA--TAGRH  167 (342)
Q Consensus        93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~~~~~~~--s~d~~  167 (342)
                      ...+.+|...+.++.++|++..+++++.|+.|++||..+.............+...+.++.+.   ++.++++  +.|++
T Consensus       223 ~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~  302 (420)
T 4gga_A          223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH  302 (420)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE
T ss_pred             eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE
Confidence            346789999999999999999999999999999999876543221112222333445555443   3355554  46899


Q ss_pred             EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc--cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384          168 VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS--VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP  245 (342)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s--~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~  245 (342)
                      |++||++++......   .....+.++.+++++..+++++  .++.+  ++||.....  ....+.+|..         +
T Consensus       303 I~iwd~~t~~~~~~~---~~~~~v~~~~~~~~~~~lv~~sg~~d~~I--~iwd~~~~~--~v~~l~gH~~---------~  366 (420)
T 4gga_A          303 IRIWNVCSGACLSAV---DAHSQVCSILWSPHYKELISGHGFAQNQL--VIWKYPTMA--KVAELKGHTS---------R  366 (420)
T ss_dssp             EEEEETTTTEEEEEE---ECSSCEEEEEEETTTTEEEEEECTTTCCE--EEEETTTCC--EEEEECCCSS---------C
T ss_pred             EEEEeCCccccceee---ccccceeeeeecCCCCeEEEEEecCCCEE--EEEECCCCc--EEEEEcCCCC---------C
Confidence            999999886432221   1223567788999999888765  55655  569986433  2344555643         6


Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEE
Q 019384          246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALS  292 (342)
Q Consensus       246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~  292 (342)
                      |.+|+|+|+|.+|+||+.|++|+|||+.........+.+...+....
T Consensus       367 V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s  413 (420)
T 4gga_A          367 VLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSS  413 (420)
T ss_dssp             EEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--------------
T ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccc
Confidence            99999999999999999999999999877655555554544443333

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.4e-31  Score=274.62  Aligned_cols=288  Identities=16%  Similarity=0.186  Sum_probs=219.1

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCC--CC-eEEEecCCcEEEEEeccC
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDD--SS-GFSASADHTVRRLVFSHG   91 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~--~~-~~s~s~D~~i~~w~~~~~   91 (342)
                      ..|.+.|.+++|+|++++|++++.||+|+|||+.+++... ...|.+.|.+++|+++  .. +++++.|+.|++||+.++
T Consensus       654 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~  733 (1249)
T 3sfz_A          654 KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK  733 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS
T ss_pred             ccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc
Confidence            5789999999999999999999999999999998876544 4579999999999864  33 468999999999999988


Q ss_pred             ce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceee-------------------------------
Q 019384           92 KE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTL-------------------------------  139 (342)
Q Consensus        92 ~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~-------------------------------  139 (342)
                      .. ..+.+|...|.+++|+|+++.|++++.|++|++||+++........                               
T Consensus       734 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  813 (1249)
T 3sfz_A          734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI  813 (1249)
T ss_dssp             SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEE
T ss_pred             chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEE
Confidence            74 4678999999999999999999999999999999986432100000                               


Q ss_pred             ---------------------e-eecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEe
Q 019384          140 ---------------------V-GTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCY  197 (342)
Q Consensus       140 ---------------------~-~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  197 (342)
                                           + ..+........++.++..+++++.++.|++||+.+......  .......+.+++++
T Consensus       814 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~--~~~h~~~v~~v~~s  891 (1249)
T 3sfz_A          814 IVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD--CRGHLSWVHGVMFS  891 (1249)
T ss_dssp             EEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEE--ECCCSSCEEEEEEC
T ss_pred             EEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeee--cCCCccceEEEEEC
Confidence                                 0 01112223345556677899999999999999987532211  12334568899999


Q ss_pred             eCCceEEEEccCCeEEEEEeechhhhhcccceeeeE------------------------EecCCC--CceeeeeeEEEE
Q 019384          198 PNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH------------------------RKSEAG--RDIVYPVNAIAF  251 (342)
Q Consensus       198 ~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h------------------------~~~~~~--~~~~~~v~~v~~  251 (342)
                      |++..+++++.|+.+.  +||...............                        ......  .....++.+++|
T Consensus       892 pdg~~l~s~s~dg~v~--vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  969 (1249)
T 3sfz_A          892 PDGSSFLTASDDQTIR--VWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL  969 (1249)
T ss_dssp             TTSSEEEEEETTSCEE--EEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEE
T ss_pred             CCCCEEEEEeCCCeEE--EEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEE
Confidence            9999999999999875  588754322111100000                        000000  001135889999


Q ss_pred             cCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          252 HPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       252 sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      +|+++++++|+.||.|++||..+++.+..+.+|...|.+++|+|||++|++++.+.
T Consensus       970 sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg 1025 (1249)
T 3sfz_A          970 SPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDS 1025 (1249)
T ss_dssp             CTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSS
T ss_pred             cCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCC
Confidence            99999999999999999999999988888999999999999999999999998654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.3e-31  Score=233.70  Aligned_cols=244  Identities=21%  Similarity=0.296  Sum_probs=183.3

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCc-
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK-   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~-   92 (342)
                      ..|...|.+++|+|++++|++++.|++|+|||+.+++.. ....|.+.|.++.|++++. +++++.|+.|++||+.+++ 
T Consensus        62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  141 (312)
T 4ery_A           62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC  141 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred             ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE
Confidence            578899999999999999999999999999999887644 4457999999999997665 5689999999999998876 


Q ss_pred             eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384           93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD  172 (342)
Q Consensus        93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd  172 (342)
                      ...+..|...|.+++|+|+++.|++++.|+.|++||+++.... ...............++.+++.+++++.|+.|++||
T Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd  220 (312)
T 4ery_A          142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  220 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-EEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-eEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence            3567889999999999999999999999999999999764321 111111112233445666777999999999999999


Q ss_pred             CCCCCCcccccccccc-eeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEE
Q 019384          173 LRNMSQPEQRRESSLK-YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF  251 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  251 (342)
                      +++.+.......+... ..+......+++..+++++.|+.+.  +||......  ...+.+|..         .|.+++|
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~--vwd~~~~~~--~~~~~~h~~---------~v~~~~~  287 (312)
T 4ery_A          221 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY--IWNLQTKEI--VQKLQGHTD---------VVISTAC  287 (312)
T ss_dssp             TTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEE--EEETTTCCE--EEEECCCSS---------CEEEEEE
T ss_pred             CCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEE--EEECCCchh--hhhhhccCC---------cEEEEee
Confidence            9876432211111111 1111222346678889999999865  599864322  223444432         6899999


Q ss_pred             cCCCCeEEEec--CCCeEEEEeCC
Q 019384          252 HPIYGTFATGG--CDGFVNVWDGN  273 (342)
Q Consensus       252 sp~~~~l~sgs--~Dg~I~iWd~~  273 (342)
                      +|++.+|++++  .|++|++|+.+
T Consensus       288 ~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          288 HPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CSSSSEEEEEECTTTCCEEEEECC
T ss_pred             cCcCCceEEEEccCCccEEEecCC
Confidence            99999999986  69999999864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-32  Score=254.38  Aligned_cols=261  Identities=10%  Similarity=0.054  Sum_probs=192.0

Q ss_pred             CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCcee
Q 019384           15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKED   94 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~   94 (342)
                      +.+-..+|.+|+|||||+++||+|.|+|||  |...++..  .+|.+.|.+++|+|++      .++.+.+|+.+... .
T Consensus        11 ~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l--~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~~-~   79 (588)
T 2j04_A           11 RKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI--NCNSKNLFHVKEFPLE------FENKLDFELAQQNG-L   79 (588)
T ss_dssp             SCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC--SSBGGGTEEEEEECCC------CCCTTTTSCCCSSC-S
T ss_pred             HhHhhccEEEEEECCCCCEEEEEcCCceee--ccccccee--cCCCccEEEEEECCCC------CcceEEEEeCCCce-E
Confidence            355679999999999999999999999999  76554433  4799999999999987      46665555433222 1


Q ss_pred             ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCC-----CCcEEEEeccCCeEEEEEcCCeEE
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ-----PERVYSLSLVGNRLVVATAGRHVN  169 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~-----~~~v~~~s~~~~~~~~~s~d~~v~  169 (342)
                      .-..|...|.+++|+|+|+.||+++.||+|++||.++    ....+. +..     ....++++++++.+++++.||+|+
T Consensus        80 ~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk  154 (588)
T 2j04_A           80 LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ  154 (588)
T ss_dssp             STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence            2226688999999999999999999999999999542    111122 211     133455667788999999999999


Q ss_pred             EEeCCCCCC--c----ccccc---cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcc-ccee-eeEEecCC
Q 019384          170 VYDLRNMSQ--P----EQRRE---SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAK-KYAF-KCHRKSEA  238 (342)
Q Consensus       170 iwd~~~~~~--~----~~~~~---~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~-~~~~-~~h~~~~~  238 (342)
                      +||+..+..  +    .....   ..+...+.+++|+|++  +++++.|+.++  +||........ ...+ .+|+.   
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVr--lWd~~~~~~~~~~~tL~~~h~~---  227 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVF--SMTVSASSHQPVSRMIQNASRR---  227 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEE--EECCCSSSSCCCEEEEECCCSS---
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEE--EEECCCCccccceeeecccccC---
Confidence            999987642  0    11110   1223468899999998  77888888775  58885433110 0122 23332   


Q ss_pred             CCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEE--CCCCCEEEEEEecc
Q 019384          239 GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSF--SRDGRLLAVASSYT  307 (342)
Q Consensus       239 ~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~--spdg~~las~s~~~  307 (342)
                            .|.+|+|+  ++.||+++ |++|++||..+++......+|...|++++|  |||+..|++++.++
T Consensus       228 ------~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG  289 (588)
T 2j04_A          228 ------KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTS  289 (588)
T ss_dssp             ------CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCE
T ss_pred             ------cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCC
Confidence                  58999999  68999997 699999999988774433489999999999  99999999988666

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3e-31  Score=256.23  Aligned_cols=282  Identities=17%  Similarity=0.235  Sum_probs=207.5

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee-c----CCceEEEEEeCCCCeEEEecCCcEEEEEeccC
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-H----GGPVLDCCFHDDSSGFSASADHTVRRLVFSHG   91 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~-h----~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~   91 (342)
                      .|...|++++|+ ++++|++++.|++|++||+.+++....+. +    ...+.++.|+.+..+++++.|+.+++|++.++
T Consensus       251 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  329 (615)
T 1pgu_A          251 PVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHD  329 (615)
T ss_dssp             CCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEE
T ss_pred             ccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCC
Confidence            788999999999 99999999999999999998876555443 3    36778888876667789999999999998775


Q ss_pred             ce-eecccCCcceeEEEEeCC---------------------------------CCEEEEeeCCCcEEEEcCCCCCCc--
Q 019384           92 KE-DILGKHDAPVRCIEYSYA---------------------------------AGQVITGSWDKSLKCWDPRGASGQ--  135 (342)
Q Consensus        92 ~~-~~~~~h~~~V~~~~~~~~---------------------------------~~~l~sgs~D~~I~iWd~~~~~~~--  135 (342)
                      +. ..+.+|...|.+++| |+                                 ++.|++++.|+.|++||+++....  
T Consensus       330 ~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  408 (615)
T 1pgu_A          330 EVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQ  408 (615)
T ss_dssp             EEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSC
T ss_pred             cEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCC
Confidence            52 344555555555555 43                                 556666666777777765421100  


Q ss_pred             ---------------------------ceeeeeecCCCCcEEEEeccCCeEEEEEc-CCeEEEEeCCCCCCccccccccc
Q 019384          136 ---------------------------ERTLVGTYPQPERVYSLSLVGNRLVVATA-GRHVNVYDLRNMSQPEQRRESSL  187 (342)
Q Consensus       136 ---------------------------~~~~~~~~~~~~~v~~~s~~~~~~~~~s~-d~~v~iwd~~~~~~~~~~~~~~~  187 (342)
                                                 ....+....+...+.++.+.++.+++++. |+.|++||+.+..... ......
T Consensus       409 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~  487 (615)
T 1pgu_A          409 PKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPL  487 (615)
T ss_dssp             EEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE-ECSSCC
T ss_pred             ceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc-cccCCc
Confidence                                       00001111122334555555778999999 9999999998653211 122234


Q ss_pred             ceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeee-EEecCCCCceeeeeeEEEEcC----------CCC
Q 019384          188 KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKC-HRKSEAGRDIVYPVNAIAFHP----------IYG  256 (342)
Q Consensus       188 ~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~-h~~~~~~~~~~~~v~~v~~sp----------~~~  256 (342)
                      ...+.+++++|+++.+++++.++.+.  +||........  .+.+ |         ..+|++++|+|          +++
T Consensus       488 ~~~v~~~~~s~~g~~l~~~~~dg~i~--iw~~~~~~~~~--~~~~~h---------~~~v~~~~~sp~~~~~~~~~~~~~  554 (615)
T 1pgu_A          488 RAKPSYISISPSETYIAAGDVMGKIL--LYDLQSREVKT--SRWAFR---------TSKINAISWKPAEKGANEEEIEED  554 (615)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEE--EEETTTTEEEE--CCSCCC---------SSCEEEEEECCCC------CCSCC
T ss_pred             cCceEEEEECCCCCEEEEcCCCCeEE--EeeCCCCccee--EeecCC---------CCceeEEEEcCccccccccccCCC
Confidence            45688999999999999999999865  59986543221  1222 3         23699999999          999


Q ss_pred             eEEEecCCCeEEEEeCCCc-eeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384          257 TFATGGCDGFVNVWDGNNK-KRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       257 ~l~sgs~Dg~I~iWd~~~~-~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                      +|++|+.||+|++||++++ +.+..+.+|...|.+++|+|||+ |++++.+.           .|.+|+++
T Consensus       555 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~-----------~v~iw~~~  613 (615)
T 1pgu_A          555 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADA-----------CIKRWNVV  613 (615)
T ss_dssp             EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTS-----------CEEEEEEC
T ss_pred             EEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCc-----------eEEEEeee
Confidence            9999999999999999987 77888999999999999999999 99988776           69999874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.1e-32  Score=250.89  Aligned_cols=270  Identities=16%  Similarity=0.141  Sum_probs=195.0

Q ss_pred             CeEEEEEcCCCCeEE-EEeCCCcEEEEECCCc-e----eeeeeecCCceEEEEEeC-CCC-eEEEecCCcEEEEEeccCc
Q 019384           21 GISNLRFSNHSDHLL-VSSWDKSVRLYDASAN-V----LRGEFMHGGPVLDCCFHD-DSS-GFSASADHTVRRLVFSHGK   92 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~-s~s~Dgti~vwd~~~~-~----~~~~~~h~~~V~~~~~~~-~~~-~~s~s~D~~i~~w~~~~~~   92 (342)
                      ....++++|+...++ +++.||+|+|||+... +    .....+|.+.|.+++|++ ++. +++++.|++|++|++.++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            445688998875544 6789999999998653 2    223457999999999987 555 5689999999999998763


Q ss_pred             --------eeecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEE
Q 019384           93 --------EDILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVV  161 (342)
Q Consensus        93 --------~~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~  161 (342)
                              ...+.+|...|.+++|+|++ ..|++++.|++|++||++++..  ...+....+...+.++.+  +++.+++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~  193 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA--VLTLGPDVHPDTIYSVDWSRDGALICT  193 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE--EEEECTTTCCSCEEEEEECTTSSCEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc--cEEEecCCCCCceEEEEECCCCCEEEE
Confidence                    34567899999999999998 6999999999999999975432  122210223444555554  5678999


Q ss_pred             EEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEE---ccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384          162 ATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS---SVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA  238 (342)
Q Consensus       162 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~  238 (342)
                      ++.|+.|++||++++.........+....+.++.++|++..++++   +.++.+  .+||.+........ ...      
T Consensus       194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i--~iwd~~~~~~~~~~-~~~------  264 (402)
T 2aq5_A          194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQV--ALWDTKHLEEPLSL-QEL------  264 (402)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEE--EEEETTBCSSCSEE-EEC------
T ss_pred             EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceE--EEEcCccccCCceE-Eec------
Confidence            999999999999886432221111222236788899999988888   566654  66998653321111 110      


Q ss_pred             CCceeeeeeEEEEcCCCCeEE-EecCCCeEEEEeCCCcee-eeccCC--CCcceEEEEECCCCCEEEEE
Q 019384          239 GRDIVYPVNAIAFHPIYGTFA-TGGCDGFVNVWDGNNKKR-LYQYSK--YPTSIAALSFSRDGRLLAVA  303 (342)
Q Consensus       239 ~~~~~~~v~~v~~sp~~~~l~-sgs~Dg~I~iWd~~~~~~-~~~~~~--~~~~V~~v~~spdg~~las~  303 (342)
                        .+...+.+++|+|++++|+ +|+.||.|++||+.+++. +..+..  |...|.+++|+||+.+++++
T Consensus       265 --~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~  331 (402)
T 2aq5_A          265 --DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK  331 (402)
T ss_dssp             --CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred             --cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec
Confidence              1112588999999999885 667899999999988763 333332  56899999999999998754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-30  Score=238.87  Aligned_cols=248  Identities=13%  Similarity=0.132  Sum_probs=186.0

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc--e
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK--E   93 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~--~   93 (342)
                      .|...|++++|+|++++|++|+.||+|+|||+.+++.. ....|.+.|.+++|. +..+++++.|+.|++|++....  .
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~  210 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN-RHVLSSGSRSGAIHHHDVRIANHQI  210 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEE
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC-CCEEEEEcCCCCEEEEecccCccee
Confidence            47889999999999999999999999999999877644 445799999999994 4567899999999999998544  4


Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC-eEEEEE--cCCeEEE
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN-RLVVAT--AGRHVNV  170 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~-~~~~~s--~d~~v~i  170 (342)
                      ..+.+|...|.+++|+|++..|++|+.|++|++||+++...  ...+..+......+.++.++. .+++++  .|+.|++
T Consensus       211 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i  288 (401)
T 4aez_A          211 GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP--KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF  288 (401)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE--EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred             eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc--cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence            56788999999999999999999999999999999975332  222223333334445555444 455554  6999999


Q ss_pred             EeCCCCCCcccccccccceeeEEEEEeeCCceEEEE--ccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384          171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS--SVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA  248 (342)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  248 (342)
                      ||++++..... .  .....+.+++++|++..++++  ..++.+  ++||...........+..|.         ..|.+
T Consensus       289 ~d~~~~~~~~~-~--~~~~~v~~~~~s~~~~~l~~~~g~~dg~i--~v~~~~~~~~~~~~~~~~h~---------~~v~~  354 (401)
T 4aez_A          289 WNAATGARVNT-V--DAGSQVTSLIWSPHSKEIMSTHGFPDNNL--SIWSYSSSGLTKQVDIPAHD---------TRVLY  354 (401)
T ss_dssp             EETTTCCEEEE-E--ECSSCEEEEEECSSSSEEEEEECTTTCEE--EEEEEETTEEEEEEEEECCS---------SCCCE
T ss_pred             EECCCCCEEEE-E--eCCCcEEEEEECCCCCeEEEEeecCCCcE--EEEecCCccceeEEEecCCC---------CCEEE
Confidence            99988643222 1  233468899999999999884  467765  56888654333333344443         26999


Q ss_pred             EEEcCCCCeEEEecCCCeEEEEeCCCceeeecc
Q 019384          249 IAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQY  281 (342)
Q Consensus       249 v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  281 (342)
                      ++|+|++.+|++++.||+|++||+.+++.+...
T Consensus       355 ~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          355 SALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            999999999999999999999999988766543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-31  Score=251.71  Aligned_cols=252  Identities=8%  Similarity=0.006  Sum_probs=183.6

Q ss_pred             CCCCCeEEEEEcCC------CCeEEEEeCCCcEEEEECCCcee------------eeeeecCCceEEEEEeCCCCeEEEe
Q 019384           17 PPSDGISNLRFSNH------SDHLLVSSWDKSVRLYDASANVL------------RGEFMHGGPVLDCCFHDDSSGFSAS   78 (342)
Q Consensus        17 ~~~~~V~~l~fs~~------~~~l~s~s~Dgti~vwd~~~~~~------------~~~~~h~~~V~~~~~~~~~~~~s~s   78 (342)
                      .|.+.|++|+|+|+      +.+|||++.||+|+|||+..+..            ....+|.+.|.+++|++++.+++|+
T Consensus       205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs  284 (524)
T 2j04_B          205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGF  284 (524)
T ss_dssp             ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEE
T ss_pred             ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEe
Confidence            35678999999997      57999999999999999976531            1344689999999998777888999


Q ss_pred             cCCcEEEEEeccCce--eecccCCcceeEE--EEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCC--CCcEEE
Q 019384           79 ADHTVRRLVFSHGKE--DILGKHDAPVRCI--EYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ--PERVYS  151 (342)
Q Consensus        79 ~D~~i~~w~~~~~~~--~~~~~h~~~V~~~--~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~v~~  151 (342)
                      .|++|++||+.++..  ..+.+|...|+++  +|++++ .+|+|||.|++|+|||+++...  ...+..+..  ....++
T Consensus       285 ~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~--~~~~~~~~~~~~v~~v~  362 (524)
T 2j04_B          285 KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT--TKTTVSRFRGSNLVPVV  362 (524)
T ss_dssp             TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH--HCEEEEECSCCSCCCEE
T ss_pred             CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc--ccccccccccCcccceE
Confidence            999999999987642  3578999999999  567777 8899999999999999875322  112222211  123356


Q ss_pred             EeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhc------
Q 019384          152 LSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQA------  225 (342)
Q Consensus       152 ~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~------  225 (342)
                      +++++..+++++.|++|++||+++........  .+...+.+++++|+++.+++++.|+++++  ||.......      
T Consensus       363 fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~--gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~l--wd~~~~~~~~~~~~~  438 (524)
T 2j04_B          363 YCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV--SRETTITAIGVSRLHPMVLAGSADGSLII--TNAARRLLHGIKNSS  438 (524)
T ss_dssp             EETTTTEEEEECSSSEEEEEETTCTTCCEEEE--ECSSCEEEEECCSSCCBCEEEETTTEEEC--CBSCSSTTTCC----
T ss_pred             eCCCcCeEEEeCCCCcEEEEECcccccceeee--cCCCceEEEEeCCCCCeEEEEECCCEEEE--EechHhhccccccCc
Confidence            77777789999999999999999865432211  23456889999999999999999998754  775321000      


Q ss_pred             ------ccceeeeEEe---------------------cCCCCceeeeeeEEEEcCCCC---eEEEecCCCeEEEEeCCC
Q 019384          226 ------KKYAFKCHRK---------------------SEAGRDIVYPVNAIAFHPIYG---TFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       226 ------~~~~~~~h~~---------------------~~~~~~~~~~v~~v~~sp~~~---~l~sgs~Dg~I~iWd~~~  274 (342)
                            ..+.+.....                     .....++..+|++|+|+|+++   +||+|+.||+|+||+++.
T Consensus       439 ~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          439 ATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             --CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             cceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence                  0001110000                     000123345799999999964   899999999999999774

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.2e-29  Score=237.51  Aligned_cols=264  Identities=19%  Similarity=0.247  Sum_probs=199.2

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEe--CCC-CeEEEecCCcEEEEEeccC
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFH--DDS-SGFSASADHTVRRLVFSHG   91 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~--~~~-~~~s~s~D~~i~~w~~~~~   91 (342)
                      ..|.+.|++++|++++ +|++|+.||+|+|||+.+++.... .+|.+.|.+++|.  +++ .+++++.|+.+++|++.+.
T Consensus       159 ~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~  237 (464)
T 3v7d_B          159 SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE  237 (464)
T ss_dssp             CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCC
T ss_pred             eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCC
Confidence            4789999999999988 999999999999999988765544 4699999999997  343 4679999999999999876


Q ss_pred             c------------------------eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC
Q 019384           92 K------------------------EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE  147 (342)
Q Consensus        92 ~------------------------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~  147 (342)
                      .                        ...+.+|...|.++  +++++.|++|+.|++|++||+++...  ...+..  +..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~--~~~  311 (464)
T 3v7d_B          238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC--LYILSG--HTD  311 (464)
T ss_dssp             CCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE--EEEECC--CSS
T ss_pred             cccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE--EEEecC--CCC
Confidence            4                        12456788888887  45688999999999999999975432  122222  334


Q ss_pred             cEEE--EeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhc
Q 019384          148 RVYS--LSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQA  225 (342)
Q Consensus       148 ~v~~--~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~  225 (342)
                      .+.+  ++.+++.+++++.|+.|++||+++++.....  ......+.++.++  +..+++++.|+.+  ++||.......
T Consensus       312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~--~~~l~s~s~dg~v--~vwd~~~~~~~  385 (464)
T 3v7d_B          312 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL--QGHTALVGLLRLS--DKFLVSAAADGSI--RGWDANDYSRK  385 (464)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEEC--SSEEEEEETTSEE--EEEETTTCCEE
T ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE--eCCCCcEEEEEEc--CCEEEEEeCCCcE--EEEECCCCcee
Confidence            4544  4556679999999999999999886432221  1233456777765  5789999999976  45998643211


Q ss_pred             ccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeec-cCCCCcceEEEEECCCCCEEEEEE
Q 019384          226 KKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQ-YSKYPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       226 ~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~-~~~~~~~V~~v~~spdg~~las~s  304 (342)
                          ...+..        ..+..++|+|++.+|++|+ ||+|++||+++++.+.. +..|...|++++|+  ++.+++++
T Consensus       386 ----~~~~~~--------~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~  450 (464)
T 3v7d_B          386 ----FSYHHT--------NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAV  450 (464)
T ss_dssp             ----EEEECT--------TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEE
T ss_pred             ----eeecCC--------CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEE
Confidence                112211        1467789999999999998 99999999999998875 67889999999997  55555555


Q ss_pred             ecc
Q 019384          305 SYT  307 (342)
Q Consensus       305 ~~~  307 (342)
                      +.+
T Consensus       451 ~~~  453 (464)
T 3v7d_B          451 EKD  453 (464)
T ss_dssp             EET
T ss_pred             EeC
Confidence            443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.98  E-value=4.3e-31  Score=238.61  Aligned_cols=246  Identities=15%  Similarity=0.180  Sum_probs=185.4

Q ss_pred             CCCCCeEEEEEcCC----CCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeC-CCC-eEEEecCCcEEEEEec
Q 019384           17 PPSDGISNLRFSNH----SDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHD-DSS-GFSASADHTVRRLVFS   89 (342)
Q Consensus        17 ~~~~~V~~l~fs~~----~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~-~~~-~~s~s~D~~i~~w~~~   89 (342)
                      .|...|++++|+|+    +++|++|+.||+|+|||+.+++.... ..|.+.|.+++|++ ++. +++++.|+.|++|++.
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~  146 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ  146 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence            36788999999999    66899999999999999988765554 46999999999987 655 5689999999999998


Q ss_pred             cCcee-ec---ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeee------------------------
Q 019384           90 HGKED-IL---GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVG------------------------  141 (342)
Q Consensus        90 ~~~~~-~~---~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~------------------------  141 (342)
                      +++.. .+   .+|...|.+++|+|+++.|++++.|+.|++||+++....  ..+.                        
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (366)
T 3k26_A          147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM--NAIKESYDYNPNKTNRPFISQKIHFPDF  224 (366)
T ss_dssp             TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHH--HHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred             cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccc--cccceeEEecCCCCcccccceeeccCcc
Confidence            87743 33   689999999999999999999999999999998753211  0000                        


Q ss_pred             --ecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCccccc------------ccccceeeEEEEEeeC--CceEEE
Q 019384          142 --TYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRR------------ESSLKYQTRCVRCYPN--GTGYAL  205 (342)
Q Consensus       142 --~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~------------~~~~~~~~~~v~~~~~--~~~~~~  205 (342)
                        ...+...+.++.++++.+++++.|+.|++||+++........            .......+.+++++|+  +..+++
T Consensus       225 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~  304 (366)
T 3k26_A          225 STRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL  304 (366)
T ss_dssp             EECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE
T ss_pred             ccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE
Confidence              001334455666668899999999999999998764421111            0111223556788898  999999


Q ss_pred             EccCCeEEEEEeechhhhhcc--cceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          206 SSVEGRVAMEFFDLSEASQAK--KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       206 ~s~~~~~~i~~~d~~~~~~~~--~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      ++.++.+.  +||........  ...+..|.       +..+|.+++|+|++++|++|+.||.|++||+.
T Consensus       305 ~~~dg~i~--vwd~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          305 GNQVGKLY--VWDLEVEDPHKAKCTTLTHHK-------CGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             ECTTSCEE--EEECCSSSGGGCEEEEECCTT-------CCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EecCCcEE--EEECCCCCCccccceEEcccc-------cCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            99999865  58886543221  11233331       12369999999999999999999999999975

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.98  E-value=2.5e-30  Score=254.58  Aligned_cols=248  Identities=22%  Similarity=0.266  Sum_probs=181.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eeeeecCCceEEEEEeCCC-CeEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGEFMHGGPVLDCCFHDDS-SGFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~i~~w~~~~~~~   93 (342)
                      ..|...|++++|+|++++|+||+.||+|+|||+.++.. ....+|.+.|.+++|++++ .+++++.|++|++|+......
T Consensus       427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~  506 (694)
T 3dm0_A          427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK  506 (694)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc
Confidence            57899999999999999999999999999999988764 4456899999999999765 567999999999999765443


Q ss_pred             ee----cccCCcceeEEEEeCCC--CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCe
Q 019384           94 DI----LGKHDAPVRCIEYSYAA--GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRH  167 (342)
Q Consensus        94 ~~----~~~h~~~V~~~~~~~~~--~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~  167 (342)
                      ..    ..+|...|.+++|+|++  ..|++|+.|++|++||+++...  ...+..+......++++.+++.+++++.|++
T Consensus       507 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~--~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~  584 (694)
T 3dm0_A          507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--RSTLAGHTGYVSTVAVSPDGSLCASGGKDGV  584 (694)
T ss_dssp             EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSB
T ss_pred             eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE--EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence            22    25799999999999986  5799999999999999975432  2223333333333445556779999999999


Q ss_pred             EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEec----------C
Q 019384          168 VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKS----------E  237 (342)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~----------~  237 (342)
                      |++||+++++.....   .....+.+++++|++..++++. ++.  +++||+........+  ..+...          .
T Consensus       585 i~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~-~~~--i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~  656 (694)
T 3dm0_A          585 VLLWDLAEGKKLYSL---EANSVIHALCFSPNRYWLCAAT-EHG--IKIWDLESKSIVEDL--KVDLKAEAEKADNSGPA  656 (694)
T ss_dssp             CEEEETTTTEEEECC---BCSSCEEEEEECSSSSEEEEEE-TTE--EEEEETTTTEEEEEE--CCCCC------------
T ss_pred             EEEEECCCCceEEEe---cCCCcEEEEEEcCCCcEEEEEc-CCC--EEEEECCCCCChhhh--ccccccccccccccccc
Confidence            999999886432211   1233578899999988776655 444  567998654322211  111000          0


Q ss_pred             CCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          238 AGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       238 ~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      ........+++++|+|+|++|++|+.||+|+|||+.
T Consensus       657 ~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          657 ATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ----CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            001111237889999999999999999999999975

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.98  E-value=1.5e-29  Score=235.90  Aligned_cols=262  Identities=18%  Similarity=0.266  Sum_probs=201.6

Q ss_pred             CCCCCCe-EEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGI-SNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V-~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~   93 (342)
                      .+|.+.| .++  ++++++|++|+.||+|+|||+.+++.. ...+|.+.|.++.|. +..+++++.|++|++|++.+++.
T Consensus       115 ~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~  191 (445)
T 2ovr_B          115 KGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGEC  191 (445)
T ss_dssp             ECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEE
T ss_pred             cccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcE
Confidence            4677765 554  556899999999999999999887654 445799999999997 45778999999999999988773


Q ss_pred             -eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384           94 -DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD  172 (342)
Q Consensus        94 -~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd  172 (342)
                       ..+.+|...|.+++|+  ++.|++|+.|++|++||++++..  ...+.  .+...+.++.++++.+++++.|+.|++||
T Consensus       192 ~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~--~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~iwd  265 (445)
T 2ovr_B          192 IHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC--LHVLM--GHVAAVRCVQYDGRRVVSGAYDFMVKVWD  265 (445)
T ss_dssp             EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE--EEEEE--CCSSCEEEEEECSSCEEEEETTSCEEEEE
T ss_pred             EEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE--EEEEc--CCcccEEEEEECCCEEEEEcCCCEEEEEE
Confidence             4678899999999996  57899999999999999875432  12222  24456777888889999999999999999


Q ss_pred             CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384          173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH  252 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  252 (342)
                      +++.......  ......+.++.+  ++..+++++.|+.+.  +||.+....  ...+..|..         .+.++.+ 
T Consensus       266 ~~~~~~~~~~--~~~~~~v~~~~~--~~~~l~~~~~d~~i~--i~d~~~~~~--~~~~~~~~~---------~v~~~~~-  327 (445)
T 2ovr_B          266 PETETCLHTL--QGHTNRVYSLQF--DGIHVVSGSLDTSIR--VWDVETGNC--IHTLTGHQS---------LTSGMEL-  327 (445)
T ss_dssp             GGGTEEEEEE--CCCSSCEEEEEE--CSSEEEEEETTSCEE--EEETTTCCE--EEEECCCCS---------CEEEEEE-
T ss_pred             CCCCcEeEEe--cCCCCceEEEEE--CCCEEEEEeCCCeEE--EEECCCCCE--EEEEcCCcc---------cEEEEEE-
Confidence            9875332211  122334666666  788899999999865  599865432  222333322         4666666 


Q ss_pred             CCCCeEEEecCCCeEEEEeCCCceeeeccCC---CCcceEEEEECCCCCEEEEEEecc
Q 019384          253 PIYGTFATGGCDGFVNVWDGNNKKRLYQYSK---YPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       253 p~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~---~~~~V~~v~~spdg~~las~s~~~  307 (342)
                       ++.+|++|+.||+|++||.++++.+..+..   |...|.+++|+  +.+|++++.++
T Consensus       328 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg  382 (445)
T 2ovr_B          328 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG  382 (445)
T ss_dssp             -ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS
T ss_pred             -eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC
Confidence             467999999999999999999888887765   88899999995  58999998755

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=5e-30  Score=229.18  Aligned_cols=249  Identities=16%  Similarity=0.239  Sum_probs=185.4

Q ss_pred             eecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCc-----eeecccCCcceeEEEEeC--CCCEEEEeeCCCcEEEEc
Q 019384           57 FMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK-----EDILGKHDAPVRCIEYSY--AAGQVITGSWDKSLKCWD  128 (342)
Q Consensus        57 ~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~-----~~~~~~h~~~V~~~~~~~--~~~~l~sgs~D~~I~iWd  128 (342)
                      .+|.+.|.+++|++++. +++++.|+.|++|++.+..     ...+.+|...|.+++|+|  ++++|++|+.|++|++||
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd   87 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE   87 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence            46999999999997765 5689999999999998753     234578999999999999  589999999999999999


Q ss_pred             CCCCCCcc-----eeeeeecCCCCcEEEEec--c--CCeEEEEEcCCeEEEEeCCCCCCccccc-----------ccccc
Q 019384          129 PRGASGQE-----RTLVGTYPQPERVYSLSL--V--GNRLVVATAGRHVNVYDLRNMSQPEQRR-----------ESSLK  188 (342)
Q Consensus       129 ~~~~~~~~-----~~~~~~~~~~~~v~~~s~--~--~~~~~~~s~d~~v~iwd~~~~~~~~~~~-----------~~~~~  188 (342)
                      +++.....     ........+...+.++.+  +  ++.+++++.|+.|++||+++........           .....
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (351)
T 3f3f_A           88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL  167 (351)
T ss_dssp             ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred             cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc
Confidence            87643211     111111223444555555  4  6689999999999999998765321110           00223


Q ss_pred             eeeEEEEEeeC---CceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC----CeEEEe
Q 019384          189 YQTRCVRCYPN---GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY----GTFATG  261 (342)
Q Consensus       189 ~~~~~v~~~~~---~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~----~~l~sg  261 (342)
                      ..+.++.++|+   +..+++++.++.+  .+|+...........+.+|.         .+|.+++|+|++    .+|++|
T Consensus       168 ~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~---------~~i~~~~~~p~~~~~~~~l~s~  236 (351)
T 3f3f_A          168 QSDFCLSWCPSRFSPEKLAVSALEQAI--IYQRGKDGKLHVAAKLPGHK---------SLIRSISWAPSIGRWYQLIATG  236 (351)
T ss_dssp             CCCEEEEECCCSSSCCEEEEEETTEEE--EEEECTTSCEEEEEECCCCC---------SCEEEEEECCCSSCSSEEEEEE
T ss_pred             cceeEEEeccCCCCCcEEEEecCCCcE--EEEccCCCceeeeeecCCCC---------cceeEEEECCCCCCcceEEEEE
Confidence            45688999997   8889999888876  33444322211122333333         369999999998    799999


Q ss_pred             cCCCeEEEEeCCCc----------------------------------------------eeeeccCCCCcceEEEEECC
Q 019384          262 GCDGFVNVWDGNNK----------------------------------------------KRLYQYSKYPTSIAALSFSR  295 (342)
Q Consensus       262 s~Dg~I~iWd~~~~----------------------------------------------~~~~~~~~~~~~V~~v~~sp  295 (342)
                      +.||+|++||++.+                                              +.+..+.+|...|++++|+|
T Consensus       237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  316 (351)
T 3f3f_A          237 CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL  316 (351)
T ss_dssp             ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred             cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence            99999999998754                                              56677889999999999999


Q ss_pred             CCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          296 DGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       296 dg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      ||++|++++.++           .|.+|+++.
T Consensus       317 ~~~~l~s~~~dg-----------~v~iw~~~~  337 (351)
T 3f3f_A          317 TGTILSSAGDDG-----------KVRLWKATY  337 (351)
T ss_dssp             SSCCEEEEETTS-----------CEEEEEECT
T ss_pred             CCCEEEEecCCC-----------cEEEEecCc
Confidence            999999999766           588888763

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.98  E-value=1.6e-31  Score=243.40  Aligned_cols=244  Identities=13%  Similarity=0.188  Sum_probs=173.5

Q ss_pred             ecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc---eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCC
Q 019384           58 MHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK---EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS  133 (342)
Q Consensus        58 ~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~---~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~  133 (342)
                      .+.++|.+++|++++.+ ++++.|+.|++|++.++.   ...+.+|...|.+++|+|++++|++++.|++|++||+++..
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~   88 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG   88 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            36789999999987765 577899999999999873   34578899999999999999999999999999999997644


Q ss_pred             -CcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEEEeCCCCCC--cccccccccceeeEEEEEeeCCceEEEEcc
Q 019384          134 -GQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQ--PEQRRESSLKYQTRCVRCYPNGTGYALSSV  208 (342)
Q Consensus       134 -~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~  208 (342)
                       ......+.  .+...+.++.+  +++.+++++.|+.|++||++....  ........+...+.+++++|+++.+++++.
T Consensus        89 ~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~  166 (377)
T 3dwl_C           89 TWKQTLVLL--RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA  166 (377)
T ss_dssp             CCCCEEECC--CCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred             ceeeeeEec--ccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence             11111122  23445555555  566899999999999999987642  111222224556889999999999999999


Q ss_pred             CCeEEEEEeechhhhhccc-----c--eeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCcee----
Q 019384          209 EGRVAMEFFDLSEASQAKK-----Y--AFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKR----  277 (342)
Q Consensus       209 ~~~~~i~~~d~~~~~~~~~-----~--~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~----  277 (342)
                      |+.+.  +||+........     +  .+......... .+..+|.+++|+|++++|++|+.||+|++||+.+++.    
T Consensus       167 d~~i~--iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~  243 (377)
T 3dwl_C          167 DRKAY--VLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA  243 (377)
T ss_dssp             SSCEE--EEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred             CCEEE--EEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence            99875  588742110000     0  00000000000 3334699999999999999999999999999998876    


Q ss_pred             eeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          278 LYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       278 ~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      +..+.+|...|.+++|+|||++|++++.+
T Consensus       244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~  272 (377)
T 3dwl_C          244 LITVKLSQLPLRSLLWANESAIVAAGYNY  272 (377)
T ss_dssp             CCCEECSSSCEEEEEEEETTEEEEEESSS
T ss_pred             eEeecCCCCceEEEEEcCCCCEEEEEcCC
Confidence            78888999999999999999999988643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.98  E-value=8.7e-31  Score=260.08  Aligned_cols=247  Identities=18%  Similarity=0.243  Sum_probs=186.4

Q ss_pred             CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc--ee-eeeeecCCceEEEEEeCC---CCeEEEecCCcEEEEE
Q 019384           14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN--VL-RGEFMHGGPVLDCCFHDD---SSGFSASADHTVRRLV   87 (342)
Q Consensus        14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~--~~-~~~~~h~~~V~~~~~~~~---~~~~s~s~D~~i~~w~   87 (342)
                      +..+|.+.|++++|+|++++|++|+.||+|+|||+..+  .. ....+|.++|.+++|+++   ..+++++.|+.|++|+
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd   83 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK   83 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence            34689999999999999999999999999999999743  33 344579999999999754   4567999999999999


Q ss_pred             eccCc---eeecccCCcceeEEEEeCC--CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc-------
Q 019384           88 FSHGK---EDILGKHDAPVRCIEYSYA--AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV-------  155 (342)
Q Consensus        88 ~~~~~---~~~~~~h~~~V~~~~~~~~--~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~-------  155 (342)
                      +.++.   ...+.+|...|.+++|+|+  ++.|++|+.|++|++||+++........+..  +...+.++.+.       
T Consensus        84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~--~~~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA--HAIGVNSASWAPATIEED  161 (753)
T ss_dssp             EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC--CSSCEEEEEECCCC----
T ss_pred             CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec--CCCceEEEEecCcccccc
Confidence            99875   3456789999999999999  8999999999999999998653322222222  33445555543       


Q ss_pred             --------CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccc
Q 019384          156 --------GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK  227 (342)
Q Consensus       156 --------~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~  227 (342)
                              ++.+++++.|+.|++||+++.....           ..                                 .
T Consensus       162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~-----------~~---------------------------------~  197 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-----------VL---------------------------------E  197 (753)
T ss_dssp             -----CGGGCCEEEEETTSCEEEEEEETTTTEE-----------EE---------------------------------E
T ss_pred             cccccCCCCCEEEEEECCCeEEEEeccCCcccc-----------ee---------------------------------e
Confidence                    4578888888888888876532100           00                                 0


Q ss_pred             ceeeeEEecCCCCceeeeeeEEEEcCC---CCeEEEecCCCeEEEEeCCCce-----eeeccCCCCcceEEEEECCCCCE
Q 019384          228 YAFKCHRKSEAGRDIVYPVNAIAFHPI---YGTFATGGCDGFVNVWDGNNKK-----RLYQYSKYPTSIAALSFSRDGRL  299 (342)
Q Consensus       228 ~~~~~h~~~~~~~~~~~~v~~v~~sp~---~~~l~sgs~Dg~I~iWd~~~~~-----~~~~~~~~~~~V~~v~~spdg~~  299 (342)
                      ..+.+|.         .+|.+++|+|+   +.+|++|+.||+|++||..++.     .+.....|...|++++|+|||++
T Consensus       198 ~~~~~h~---------~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~  268 (753)
T 3jro_A          198 STLEGHS---------DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV  268 (753)
T ss_dssp             EEECCCS---------SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCC
T ss_pred             eeecCCC---------CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCE
Confidence            0111222         26899999999   8999999999999999998753     33445568899999999999999


Q ss_pred             EEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384          300 LAVASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       300 las~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                      |++++.++           .|.+|++.
T Consensus       269 l~s~s~Dg-----------~I~vwd~~  284 (753)
T 3jro_A          269 LALSGGDN-----------KVTLWKEN  284 (753)
T ss_dssp             EEEECSSS-----------CEECCBCC
T ss_pred             EEEEcCCC-----------EEEEEecC
Confidence            99998755           36666665

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=5.1e-30  Score=235.75  Aligned_cols=279  Identities=16%  Similarity=0.141  Sum_probs=180.7

Q ss_pred             CCeEEEEEc---CCCCeEEEEeCCCcEEEEECCCc----------eeeeeeecCCceEEEEEeC----------------
Q 019384           20 DGISNLRFS---NHSDHLLVSSWDKSVRLYDASAN----------VLRGEFMHGGPVLDCCFHD----------------   70 (342)
Q Consensus        20 ~~V~~l~fs---~~~~~l~s~s~Dgti~vwd~~~~----------~~~~~~~h~~~V~~~~~~~----------------   70 (342)
                      ...+.+.|.   +++..|++++.|+.|++|+....          ..+....+...+..+.|.+                
T Consensus        16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (393)
T 4gq1_A           16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVN   95 (393)
T ss_dssp             CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---------
T ss_pred             CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCccee
Confidence            355677774   45556777778999999986321          1122234455555555432                


Q ss_pred             ----CC-CeEEEecCCcEEEEEeccCce------eecccCCcceeEEEEeC--------CCCEEEEeeCCCcEEEEcCCC
Q 019384           71 ----DS-SGFSASADHTVRRLVFSHGKE------DILGKHDAPVRCIEYSY--------AAGQVITGSWDKSLKCWDPRG  131 (342)
Q Consensus        71 ----~~-~~~s~s~D~~i~~w~~~~~~~------~~~~~h~~~V~~~~~~~--------~~~~l~sgs~D~~I~iWd~~~  131 (342)
                          ++ .+++++.|++|++|+...+..      ..+.+|.+.|++++|+|        ++++|+|||.|++|||||+++
T Consensus        96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A           96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred             ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence                22 356899999999999988753      23679999999999997        788999999999999999865


Q ss_pred             CCCcceeeeeecCCCCcEEEEeccC---CeEEEEEcCCeEEEEeCCCCCCcccccc-----------------------c
Q 019384          132 ASGQERTLVGTYPQPERVYSLSLVG---NRLVVATAGRHVNVYDLRNMSQPEQRRE-----------------------S  185 (342)
Q Consensus       132 ~~~~~~~~~~~~~~~~~v~~~s~~~---~~~~~~s~d~~v~iwd~~~~~~~~~~~~-----------------------~  185 (342)
                      ...  .....  .+...+.++.+.+   +.+++++.|++|++||+++.........                       .
T Consensus       176 ~~~--~~~~~--~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  251 (393)
T 4gq1_A          176 EGP--ILAGY--PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS  251 (393)
T ss_dssp             TEE--EEEEE--ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred             Cce--eeeec--CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence            322  11122  2334555665543   3689999999999999987643211000                       0


Q ss_pred             ccceeeEEEEEe-eCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCC----------CceeeeeeEEEEcC-
Q 019384          186 SLKYQTRCVRCY-PNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAG----------RDIVYPVNAIAFHP-  253 (342)
Q Consensus       186 ~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~----------~~~~~~v~~v~~sp-  253 (342)
                      .....+.++.++ +++..+++++.|+.+.  +||+........  +..|......          .... ....+.|+| 
T Consensus       252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~--vwd~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  326 (393)
T 4gq1_A          252 GIASSLANVRWIGSDGSGILAMCKSGAWL--RWNLFANNDYNE--ISDSTMKLGPKNLLPNVQGISLFP-SLLGACPHPR  326 (393)
T ss_dssp             CCSSSCSEEEEETTTTCEEEEECTTSEEE--EEEC---------------------CCSCSEEEECSSC-CSSCCEECSS
T ss_pred             cccccceeeeeecCCCCEEEEEeCCCCEE--EEECccCCCCce--EeeecCccccEEEccccccccccC-cceeEEEccC
Confidence            111234566665 7899999999999765  588764332211  1222111000          0001 122334544 


Q ss_pred             -CCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          254 -IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       254 -~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                       ++.++++|+.||+|+|||..+++.+..+.+|...|.+++|||||++||+++.++
T Consensus       327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence             344678899999999999999888777778889999999999999999998665

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-31  Score=249.22  Aligned_cols=294  Identities=12%  Similarity=0.136  Sum_probs=198.1

Q ss_pred             cCCCCCCCccCCCCCCCCeEEEEE----------cCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeC-C
Q 019384            4 VHPPPTSGRELGNPPSDGISNLRF----------SNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHD-D   71 (342)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~V~~l~f----------s~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~-~   71 (342)
                      +|+||...+.-...+...+..+.+          +|+++.+++++      +|+.....+... .+|.+.|.+++|++ +
T Consensus         2 ~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~f~~~~~~~~~~~------~w~~~g~~~~~~~~~h~~~V~~~~~s~~~   75 (437)
T 3gre_A            2 GHHHHHHGEGDVESIEKFLSTFKILPPLRDYKEFGPIQEIVRSPN------MGNLRGKLIATLMENEPNSITSSAVSPGE   75 (437)
T ss_dssp             ------------CCCGGGTTCC-CCCCGGGCGGGCCCCCCCCCCC------GGGCCCCEEEEECTTTTSCEEEEEEECSS
T ss_pred             CccccccCCCChhHHHHHhccCCCCCChhchhhcCCccccccccc------cccccceEEeeeccCCCCceEEEEECCCC
Confidence            578888888777766665555554          55666676654      488665544455 57899999999998 6


Q ss_pred             CC-eEEEecCCcEEEEEecc---Cc---eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCC-CCcceeeee--
Q 019384           72 SS-GFSASADHTVRRLVFSH---GK---EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA-SGQERTLVG--  141 (342)
Q Consensus        72 ~~-~~s~s~D~~i~~w~~~~---~~---~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~-~~~~~~~~~--  141 (342)
                      +. +++|+.|++|++|++.+   +.   .....+|...|.+++|+|+++.|++|+.|++|++||++.. .+.......  
T Consensus        76 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  155 (437)
T 3gre_A           76 TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE  155 (437)
T ss_dssp             SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE
T ss_pred             CCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc
Confidence            64 57999999999999876   32   1222369999999999999999999999999999998411 111111111  


Q ss_pred             ---ec---C--CCCcEEEEe----ccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC
Q 019384          142 ---TY---P--QPERVYSLS----LVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE  209 (342)
Q Consensus       142 ---~~---~--~~~~v~~~s----~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~  209 (342)
                         ..   .  ....+.++.    .++..+++++.|+.|++||+++.+.............+.+++++|++..+++++.|
T Consensus       156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d  235 (437)
T 3gre_A          156 CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR  235 (437)
T ss_dssp             EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT
T ss_pred             eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC
Confidence               00   1  223344433    23668999999999999999886543222221134578999999999999999999


Q ss_pred             CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc----CCCCeEEEecCCCeEEEEeCCCceeeeccCC--
Q 019384          210 GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH----PIYGTFATGGCDGFVNVWDGNNKKRLYQYSK--  283 (342)
Q Consensus       210 ~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s----p~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~--  283 (342)
                      +.+.  +||++.......+.+ .         +..+|.+++|+    |++.+|++|+.||+|++||+++++++..+.+  
T Consensus       236 g~i~--iwd~~~~~~~~~~~~-~---------~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  303 (437)
T 3gre_A          236 GIID--IWDIRFNVLIRSWSF-G---------DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSD  303 (437)
T ss_dssp             SCEE--EEETTTTEEEEEEBC-T---------TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSS
T ss_pred             CeEE--EEEcCCccEEEEEec-C---------CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCC
Confidence            9865  599865332222111 1         12368999554    5688999999999999999998876655442  


Q ss_pred             ------------------------CCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          284 ------------------------YPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       284 ------------------------~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                                              |...|++++|+ ++++|++++.+.           .|.+|++..
T Consensus       304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~-----------~i~~wd~~~  359 (437)
T 3gre_A          304 EQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS-----------SIVMFSLNE  359 (437)
T ss_dssp             SCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT-----------EEEEEETTC
T ss_pred             CCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCC-----------eEEEEECCC
Confidence                                    55678899999 789999988765           477777654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-30  Score=244.40  Aligned_cols=259  Identities=13%  Similarity=0.086  Sum_probs=189.7

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCC-----ceEEEEEeCCCCe-EEEecCCcEEEEEecc
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGG-----PVLDCCFHDDSSG-FSASADHTVRRLVFSH   90 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~-----~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~   90 (342)
                      .|.+.|++++|||+|++||+++.||+|+|||..+  +...+.|..     .|.+++|+|+++. ++|+.|++|++|++..
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~  160 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK  160 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence            6688999999999999999999999999999654  444333665     4999999987765 6899999999999988


Q ss_pred             Cce--------eec----ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcc-eeeeeecCCCCcEEEEeccCC
Q 019384           91 GKE--------DIL----GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQE-RTLVGTYPQPERVYSLSLVGN  157 (342)
Q Consensus        91 ~~~--------~~~----~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~-~~~~~~~~~~~~v~~~s~~~~  157 (342)
                      +..        ..+    .+|...|.+++|+|++  +++++.|++|++||+.+..... ...+.. .+...|.++.+.++
T Consensus       161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~-~h~~~V~svaFsg~  237 (588)
T 2j04_A          161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN-ASRRKITDLKIVDY  237 (588)
T ss_dssp             CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC-CCSSCCCCEEEETT
T ss_pred             CccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc-cccCcEEEEEEECC
Confidence            742        333    6788999999999998  8889999999999987543210 111211 12233444444467


Q ss_pred             eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEE--eeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEe
Q 019384          158 RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRC--YPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK  235 (342)
Q Consensus       158 ~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~  235 (342)
                      .+++++ +++|++||+.+........  .+...+..+++  +|+++.++++..+|. ++  |...               
T Consensus       238 ~LASa~-~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~d~~~La~a~edG~-kl--w~~d---------------  296 (588)
T 2j04_A          238 KVVLTC-PGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEKESTILLMSNKTSY-KV--LLED---------------  296 (588)
T ss_dssp             EEEEEC-SSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCSSCEEEEECSSCEE-EE--EESS---------------
T ss_pred             EEEEEe-CCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCCCCCEEEEEcCCCC-EE--Eeec---------------
Confidence            777776 7999999998753312211  23345677889  999999999998887 55  4431               


Q ss_pred             cCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCC
Q 019384          236 SEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPH  315 (342)
Q Consensus       236 ~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~  315 (342)
                                  .++|+|++..+++.  |+++++|+...+. +..+.+ ...|++++|||||+.||+++.- -+-.-||.
T Consensus       297 ------------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~i-~~~~~~y~  359 (588)
T 2j04_A          297 ------------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVYDM-ERVAFKYK  359 (588)
T ss_dssp             ------------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEEEE-ECSSCCCC
T ss_pred             ------------cEEECCCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEEec-cCceeEEe
Confidence                        14589999888775  9999999876443 445544 6679999999999999999875 22223444


Q ss_pred             CCC
Q 019384          316 EPD  318 (342)
Q Consensus       316 ~~~  318 (342)
                      -++
T Consensus       360 i~s  362 (588)
T 2j04_A          360 IAS  362 (588)
T ss_dssp             CSS
T ss_pred             ecc
Confidence            444

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.9e-29  Score=223.77  Aligned_cols=243  Identities=15%  Similarity=0.176  Sum_probs=180.8

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc--
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK--   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~--   92 (342)
                      ..|...|++|+|+|++++||||+.||+|+|||+.+++.. ...+|...+.++.+. +..+++++.++.+++|+.....  
T Consensus        64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~-~~~l~s~~~~~~~~~~~~~~~~~~  142 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHH  142 (318)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCE
T ss_pred             cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC-CCEEEEEecCCceEeeecCCCcee
Confidence            567889999999999999999999999999999988754 445788888876664 3456799999999999987765  


Q ss_pred             eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cC-CeE--EEEEcCCe
Q 019384           93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VG-NRL--VVATAGRH  167 (342)
Q Consensus        93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~-~~~--~~~s~d~~  167 (342)
                      ...+.+|...+.++++.++++.|++++.|++|++||++++................+..+.+  .+ +.+  ++++.+++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  222 (318)
T 4ggc_A          143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH  222 (318)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE
T ss_pred             EEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCE
Confidence            34578899999999999999999999999999999998654322111222223334444443  33 333  34566789


Q ss_pred             EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc--cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384          168 VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS--VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP  245 (342)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s--~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~  245 (342)
                      |++||.+.......   ......+..+.+.|++..+++++  .++.+  ++||.....  ....+.+|..         +
T Consensus       223 i~lwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i--~iwd~~~~~--~~~~l~gH~~---------~  286 (318)
T 4ggc_A          223 IRIWNVCSGACLSA---VDAHSQVCSILWSPHYKELISGHGFAQNQL--VIWKYPTMA--KVAELKGHTS---------R  286 (318)
T ss_dssp             EEEEETTTCCEEEE---EECSSCEEEEEEETTTTEEEEEECTTTCCE--EEEETTTCC--EEEEECCCSS---------C
T ss_pred             EEEEeccccccccc---ccceeeeeeeeecccccceEEEEEcCCCEE--EEEECCCCc--EEEEEcCCCC---------C
Confidence            99999987643221   12233467788899988887765  56655  569986543  2334555543         6


Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEEeCCCc
Q 019384          246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNK  275 (342)
Q Consensus       246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~  275 (342)
                      |++|+|+|++++|+|||.||+|+|||+...
T Consensus       287 V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          287 VLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             EEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            999999999999999999999999998653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=9e-30  Score=232.58  Aligned_cols=243  Identities=17%  Similarity=0.221  Sum_probs=176.8

Q ss_pred             CCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCceeeeeee---cCCceEEEEEeCCCC-eEEEecCCcEEEEEeccC
Q 019384           17 PPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANVLRGEFM---HGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHG   91 (342)
Q Consensus        17 ~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~~~~~~~---h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~   91 (342)
                      .|...|++++|+| ++++|++++.|++|+|||+.+........   |...|.+++|++++. +++++.|+.|++||+...
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  195 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH  195 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC
Confidence            6899999999999 78999999999999999998765554443   447899999997665 568999999999999655


Q ss_pred             ceeecccCCcceeEEEEeCCCC-EEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE--ec-cCCeEEEEEcCCe
Q 019384           92 KEDILGKHDAPVRCIEYSYAAG-QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL--SL-VGNRLVVATAGRH  167 (342)
Q Consensus        92 ~~~~~~~h~~~V~~~~~~~~~~-~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~--s~-~~~~~~~~s~d~~  167 (342)
                      ....+.+|...|.+++|+|+++ +|++|+.|++|++||+++..... ..+....+...+.++  +. +++.+++++.|+.
T Consensus       196 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~  274 (383)
T 3ei3_B          196 EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN-SYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE  274 (383)
T ss_dssp             EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT-CEEEEEECSSCEEEEEECTTTSCEEEEEESSSE
T ss_pred             EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc-ceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc
Confidence            5667789999999999999998 89999999999999997533211 112212233445544  44 5678999999999


Q ss_pred             EEEEeCCCCCCcccccccc---------c------ceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeee
Q 019384          168 VNVYDLRNMSQPEQRRESS---------L------KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKC  232 (342)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~---------~------~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~  232 (342)
                      |++||+++...........         +      ......++++|+++.  +++.++.+  ++||.......  ..+..
T Consensus       275 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i--~iwd~~~~~~~--~~l~~  348 (383)
T 3ei3_B          275 IRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTI--DIYDANSGGLV--HQLRD  348 (383)
T ss_dssp             EEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCE--EEEETTTCCEE--EEECB
T ss_pred             EEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeE--EEEecCCCcee--eeecC
Confidence            9999998765432211110         0      012334556676665  66677766  56998654322  22222


Q ss_pred             EEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384          233 HRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       233 h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~  274 (342)
                      |.       +...+.+++|+|++.+|++|+ ||+|+|||+++
T Consensus       349 ~~-------~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          349 PN-------AAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TT-------BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CC-------CCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            11       122477789999999999997 99999999874

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=8.9e-30  Score=236.82  Aligned_cols=254  Identities=18%  Similarity=0.241  Sum_probs=188.2

Q ss_pred             CCCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCC-----------ceeeeeeecCCceEEEEEeCCCC--eEEEecCC
Q 019384           16 NPPSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASA-----------NVLRGEFMHGGPVLDCCFHDDSS--GFSASADH   81 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~-----------~~~~~~~~h~~~V~~~~~~~~~~--~~s~s~D~   81 (342)
                      ..|.+.|++++|+|+ +.+||+++.||+|+|||+..           ........|.+.|.+++|++++.  +++++.|+
T Consensus       125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  204 (430)
T 2xyi_A          125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH  204 (430)
T ss_dssp             EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred             EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence            467889999999997 78999999999999999864           22445567999999999997654  67899999


Q ss_pred             cEEEEEeccCc--------eeecccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCCCC-cceeeeeecCCCCcEEE
Q 019384           82 TVRRLVFSHGK--------EDILGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGASG-QERTLVGTYPQPERVYS  151 (342)
Q Consensus        82 ~i~~w~~~~~~--------~~~~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~-~~~~~~~~~~~~~~v~~  151 (342)
                      .|++|++....        ...+.+|...|.+++|+| ++..|++++.|+.|++||+++... .....+..  +...+.+
T Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~  282 (430)
T 2xyi_A          205 TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA--HTAEVNC  282 (430)
T ss_dssp             CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC--CSSCEEE
T ss_pred             eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec--CCCCeEE
Confidence            99999998732        124568999999999999 667899999999999999986421 11122222  3344555


Q ss_pred             Eecc--CC-eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccc
Q 019384          152 LSLV--GN-RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKY  228 (342)
Q Consensus       152 ~s~~--~~-~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~  228 (342)
                      ++++  +. .+++++.|+.|++||+++...+.                                               .
T Consensus       283 i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~-----------------------------------------------~  315 (430)
T 2xyi_A          283 LSFNPYSEFILATGSADKTVALWDLRNLKLKL-----------------------------------------------H  315 (430)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEETTCTTSCS-----------------------------------------------E
T ss_pred             EEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCe-----------------------------------------------E
Confidence            5554  43 57788889999999987632110                                               0


Q ss_pred             eeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCC--------------ceeeeccCCCCcceEEEEE
Q 019384          229 AFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNN--------------KKRLYQYSKYPTSIAALSF  293 (342)
Q Consensus       229 ~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~--------------~~~~~~~~~~~~~V~~v~~  293 (342)
                      .+..|.         .+|.+++|+|+++ +|++++.|++|+|||+..              ...+..+.+|...|.+++|
T Consensus       316 ~~~~h~---------~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  386 (430)
T 2xyi_A          316 SFESHK---------DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW  386 (430)
T ss_dssp             EEECCS---------SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred             EeecCC---------CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE
Confidence            011111         1588999999986 689999999999999876              2566778899999999999


Q ss_pred             CCCCC-EEEEEEeccccCCCCCCCCCcEEEEEccCCccccCCCCCC
Q 019384          294 SRDGR-LLAVASSYTFEEGDKPHEPDAIFVRSVNEIEVKPKPKAYP  338 (342)
Q Consensus       294 spdg~-~las~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      +|++. +|++++.++           .|.+|++.+.-+.+..+..|
T Consensus       387 ~p~~~~~l~s~s~dg-----------~i~iw~~~~~~~~~~~~~~~  421 (430)
T 2xyi_A          387 NPNEPWIICSVSEDN-----------IMQVWQMAENVYNDEEPEIP  421 (430)
T ss_dssp             CSSSTTEEEEEETTS-----------EEEEEEECHHHHCC------
T ss_pred             CCCCCCEEEEEECCC-----------CEEEeEcccccccCCCccCC
Confidence            99999 777777655           58899987655554444433

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4e-30  Score=231.92  Aligned_cols=261  Identities=10%  Similarity=0.005  Sum_probs=186.0

Q ss_pred             EEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEecc---------Cc-ee-
Q 019384           26 RFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSH---------GK-ED-   94 (342)
Q Consensus        26 ~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~---------~~-~~-   94 (342)
                      .+.+++.+|+||+.||+|+|||+.+++....+. .+.|.++.|++.  +++++.|+++++|+...         +. .. 
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~  119 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLRE  119 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEE
Confidence            344678899999999999999998877655443 567778888776  88999999999997653         22 11 


Q ss_pred             ecccCCcceeEEEEeC--CCCEEEEeeCCCcEEEEcCCCCCCcceeee-eecCCCCcEEEEeccCCeEEEEEcCCeEEEE
Q 019384           95 ILGKHDAPVRCIEYSY--AAGQVITGSWDKSLKCWDPRGASGQERTLV-GTYPQPERVYSLSLVGNRLVVATAGRHVNVY  171 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~--~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~-~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iw  171 (342)
                      ...+|...|.+++|+|  ++++|++|+.|++|++||++++..  .... .........+.+++++..+++++.|+.|++|
T Consensus       120 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw  197 (343)
T 3lrv_A          120 IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ--YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY  197 (343)
T ss_dssp             EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE--EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred             eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE--EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence            2236778999999999  999999999999999999976433  1111 1222234455666677789999999999999


Q ss_pred             eCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccce-eeeEEecCCCCceeeee--eE
Q 019384          172 DLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA-FKCHRKSEAGRDIVYPV--NA  248 (342)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~-~~~h~~~~~~~~~~~~v--~~  248 (342)
                      |++++..........+...+.+++|+|++..+++++ ++.  +++||++.......+. +..|.         .++  .+
T Consensus       198 d~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~--v~iwd~~~~~~~~~~~~~~~~~---------~~~~~~~  265 (343)
T 3lrv_A          198 NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQT--VVCFDLRKDVGTLAYPTYTIPE---------FKTGTVT  265 (343)
T ss_dssp             ESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSB--EEEEETTSSTTCBSSCCCBC--------------CCEE
T ss_pred             ECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCe--EEEEEcCCCCcceeeccccccc---------ccccceE
Confidence            999875541222222446789999999999999998 444  5679997653322211 11111         123  36


Q ss_pred             EEEcCCCCeEEEecC-CCeEEEEeCCCceeeeccCCCCcceEEEEECC---CCCEEEEEEecc
Q 019384          249 IAFHPIYGTFATGGC-DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSR---DGRLLAVASSYT  307 (342)
Q Consensus       249 v~~sp~~~~l~sgs~-Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~sp---dg~~las~s~~~  307 (342)
                      ++|+|++++|++++. |+.|+||+.+........    .++..++|+|   +++.|++++.++
T Consensus       266 ~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~  324 (343)
T 3lrv_A          266 YDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDG  324 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETT
T ss_pred             EEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCC
Confidence            999999999999988 999999998654332222    5677888888   888888888765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=4.1e-30  Score=239.41  Aligned_cols=249  Identities=17%  Similarity=0.211  Sum_probs=172.2

Q ss_pred             CCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCceeeeeee---cCCceEEEEEeCCCCe-EEEecCCcEEEEEecc
Q 019384           16 NPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANVLRGEFM---HGGPVLDCCFHDDSSG-FSASADHTVRRLVFSH   90 (342)
Q Consensus        16 ~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~~~~~~~---h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~   90 (342)
                      .+|.+.|++|+|+| ++++|+|||.||+|+|||+.++.+.....   +...+.+++|++++.+ ++|+.|+.|++||++.
T Consensus       161 ~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~  240 (435)
T 4e54_B          161 IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG  240 (435)
T ss_dssp             CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS
T ss_pred             cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc
Confidence            47899999999998 78999999999999999998766544433   2345788999877664 6899999999999987


Q ss_pred             CceeecccCCcceeEEEEeCCCC-EEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCe
Q 019384           91 GKEDILGKHDAPVRCIEYSYAAG-QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRH  167 (342)
Q Consensus        91 ~~~~~~~~h~~~V~~~~~~~~~~-~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~  167 (342)
                      .....+.+|...|.+++|+|++. +|++|+.|++|++||+++..... .......+...+.++++  ++..|++++.|++
T Consensus       241 ~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~  319 (435)
T 4e54_B          241 KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA-SFLYSLPHRHPVNAACFSPDGARLLTTDQKSE  319 (435)
T ss_dssp             CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS-CCSBCCBCSSCEEECCBCTTSSEEEEEESSSC
T ss_pred             ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc-eEEEeeeccccccceeECCCCCeeEEEcCCCE
Confidence            66667889999999999999875 67899999999999998654321 11222234445666555  5678999999999


Q ss_pred             EEEEeCCCCCCcccccccccc----eeeEEEEEeeCCceEEEEcc-----------CCeEEEEEeechhhhhcccceeee
Q 019384          168 VNVYDLRNMSQPEQRRESSLK----YQTRCVRCYPNGTGYALSSV-----------EGRVAMEFFDLSEASQAKKYAFKC  232 (342)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~s~-----------~~~~~i~~~d~~~~~~~~~~~~~~  232 (342)
                      |++||+++.........+...    .......++|++..++++..           ++. .|++||......... ....
T Consensus       320 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~i~iwd~~~g~~~~~-l~~~  397 (435)
T 4e54_B          320 IRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELR-TIDVFDGNSGKMMCQ-LYDP  397 (435)
T ss_dssp             EEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCC-CEEEECSSSCCEEEE-ECCS
T ss_pred             EEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCC-EEEEEECCCCcEEEE-EeCC
Confidence            999999886543222111100    01122345566555555432           211 346788754322111 0111


Q ss_pred             EEecCCCCceeeeeeEE-EEcCCCCeEEEecCCCeEEEEeCCCcee
Q 019384          233 HRKSEAGRDIVYPVNAI-AFHPIYGTFATGGCDGFVNVWDGNNKKR  277 (342)
Q Consensus       233 h~~~~~~~~~~~~v~~v-~~sp~~~~l~sgs~Dg~I~iWd~~~~~~  277 (342)
                      |         ...|.++ +|+|+|.+|++|+ |++|+|||+++++.
T Consensus       398 ~---------~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          398 E---------SSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             S---------CCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             C---------CCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            2         2247776 6999999999987 88999999988754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.5e-29  Score=224.78  Aligned_cols=247  Identities=13%  Similarity=0.124  Sum_probs=188.1

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEecC-----CcEEEEEec
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASAD-----HTVRRLVFS   89 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D-----~~i~~w~~~   89 (342)
                      ..|...|++++|+|++++|++++.||+|+|||+.+++....+.|...|.+++|++++.. ++++.+     +.+++|++.
T Consensus        71 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~  150 (369)
T 3zwl_B           71 DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE  150 (369)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred             hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec
Confidence            46889999999999999999999999999999998887777779999999999977765 577777     899999997


Q ss_pred             cCce------------eecccCCc--ceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc
Q 019384           90 HGKE------------DILGKHDA--PVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV  155 (342)
Q Consensus        90 ~~~~------------~~~~~h~~--~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~  155 (342)
                      ....            ..+..|..  .+.+++|+|+++.|++++.|+.|++||+++... ....+..+......+.++.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~  229 (369)
T 3zwl_B          151 RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE-YVDSIDLHEKSISDMQFSPD  229 (369)
T ss_dssp             ECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE-EEEEEECCSSCEEEEEECTT
T ss_pred             CCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE-eEEEEecCCCceeEEEECCC
Confidence            7641            12344555  899999999999999999999999999975322 12222222222233344556


Q ss_pred             CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeE------------EEEEeechhhh
Q 019384          156 GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRV------------AMEFFDLSEAS  223 (342)
Q Consensus       156 ~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~------------~i~~~d~~~~~  223 (342)
                      ++.+++++.|+.|++||+++.......   .....+.+++++|++..+++++.++..            .+++||.....
T Consensus       230 ~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  306 (369)
T 3zwl_B          230 LTYFITSSRDTNSFLVDVSTLQVLKKY---ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE  306 (369)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEE---ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred             CCEEEEecCCceEEEEECCCCceeeee---cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence            678999999999999999886433221   133457889999999999998877632            45668875432


Q ss_pred             hcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCcee
Q 019384          224 QAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKR  277 (342)
Q Consensus       224 ~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~  277 (342)
                      .  ...+..|.         .+|.+++|+|++++|++|+.||+|++|+++++..
T Consensus       307 ~--~~~~~~~~---------~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          307 E--IGRVQGHF---------GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             E--EEEEECCS---------SCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred             c--hhheeccc---------CcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence            2  22233333         3699999999999999999999999999986543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=7.6e-30  Score=231.25  Aligned_cols=245  Identities=13%  Similarity=0.136  Sum_probs=187.5

Q ss_pred             ecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc---eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCC
Q 019384           58 MHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK---EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS  133 (342)
Q Consensus        58 ~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~---~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~  133 (342)
                      .|.++|.+++|++++.+ ++++.|+.|++|++.+++   ...+.+|...|.+++|+|++++|++++.|++|++||+++..
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~   85 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   85 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence            38899999999987765 578899999999998884   45677899999999999999999999999999999986543


Q ss_pred             CcceeeeeecCCCCcEEEE--eccCCeEEEEEcCCeEEEEeCCCCCCc--ccccccccceeeEEEEEeeCCceEEEEccC
Q 019384          134 GQERTLVGTYPQPERVYSL--SLVGNRLVVATAGRHVNVYDLRNMSQP--EQRRESSLKYQTRCVRCYPNGTGYALSSVE  209 (342)
Q Consensus       134 ~~~~~~~~~~~~~~~v~~~--s~~~~~~~~~s~d~~v~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~  209 (342)
                      ..  .......+...+.++  +.+++.+++++.|+.|++||++.....  ...........+.+++++|++..+++++.+
T Consensus        86 ~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  163 (372)
T 1k8k_C           86 WK--PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  163 (372)
T ss_dssp             EE--EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             ee--eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence            21  111112233445444  445678999999999999999876431  111112334568899999999999999999


Q ss_pred             CeEEEEEeechhhh----------------hcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          210 GRVAMEFFDLSEAS----------------QAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       210 ~~~~i~~~d~~~~~----------------~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      +.+.  +||.....                ......+..         +..+|.+++|+|++.+|++++.||+|++||.+
T Consensus       164 g~i~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  232 (372)
T 1k8k_C          164 FKCR--IFSAYIKEVEERPAPTPWGSKMPFGELMFESSS---------SCGWVHGVCFSANGSRVAWVSHDSTVCLADAD  232 (372)
T ss_dssp             SCEE--EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC---------CSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             CCEE--EEEcccccccccccccccccccchhhheEecCC---------CCCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            9875  58863110                111111222         22369999999999999999999999999999


Q ss_pred             CceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          274 NKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       274 ~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      +++.+..+..|...|.+++|+||+++|+++ .++           .|.+|++..
T Consensus       233 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~-----------~i~i~~~~~  274 (372)
T 1k8k_C          233 KKMAVATLASETLPLLAVTFITESSLVAAG-HDC-----------FPVLFTYDS  274 (372)
T ss_dssp             GTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTS-----------SCEEEEEET
T ss_pred             CCceeEEEccCCCCeEEEEEecCCCEEEEE-eCC-----------eEEEEEccC
Confidence            998898999999999999999999999877 433           377887765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=5.4e-29  Score=225.82  Aligned_cols=268  Identities=13%  Similarity=0.080  Sum_probs=184.8

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC-e-EEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-G-FSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~-~s~s~D~~i~~w~~~~~~~   93 (342)
                      +.|.+.|++++|+|||++||+|+.|+ ++|||+..........+ ..+..+.+.++.. + ++++.|++|++||..+++.
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~   93 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM-RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD   93 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC-SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec-CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence            78899999999999999999988775 78999987655443333 3577777765443 3 4678889999999988875


Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEE--EEcCCeEEEE
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVV--ATAGRHVNVY  171 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~--~s~d~~v~iw  171 (342)
                      .....|...|.+++++++  .++.+ .|+.|++||+++..... ..+..   +..+.+++.  +.+++  ++.++.|++|
T Consensus        94 ~~~~~~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~-~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iw  164 (355)
T 3vu4_A           94 VSRIKVDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRI-TDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHIT  164 (355)
T ss_dssp             EEEEECSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBS-SCCEE---EEEEEEEET--TEEEEEESSCTTCEEEE
T ss_pred             EEEEECCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceee-EEecc---CCceEEEEc--cEEEEeCCCcCcEEEEE
Confidence            443447779999999874  34443 48899999997641111 11111   233444544  66666  4788999999


Q ss_pred             eCCCCCC--------------cccccccccceeeEEEEEeeCCceEEEEccCCe-EEEEEeechhhhhcccceee-e-EE
Q 019384          172 DLRNMSQ--------------PEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR-VAMEFFDLSEASQAKKYAFK-C-HR  234 (342)
Q Consensus       172 d~~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~~i~~~d~~~~~~~~~~~~~-~-h~  234 (342)
                      |+++...              +.......+...+.+++++|++..+++++.|++ ++  +||.......  ..+. + |.
T Consensus       165 d~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~--iwd~~~~~~~--~~~~~g~h~  240 (355)
T 3vu4_A          165 KLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIR--VFKTEDGVLV--REFRRGLDR  240 (355)
T ss_dssp             ECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEE--EEETTTCCEE--EEEECTTCC
T ss_pred             ECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEE--EEECCCCcEE--EEEEcCCCC
Confidence            9987531              001112234556899999999999999999997 64  5998654322  2232 1 32


Q ss_pred             ecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCcee--eeccC---------------------CCCcceEEE
Q 019384          235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKR--LYQYS---------------------KYPTSIAAL  291 (342)
Q Consensus       235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~--~~~~~---------------------~~~~~V~~v  291 (342)
                               .+|.+++|+|++++|++|+.|++|+|||++....  ...+.                     ........+
T Consensus       241 ---------~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (355)
T 3vu4_A          241 ---------ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKI  311 (355)
T ss_dssp             ---------SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEE
T ss_pred             ---------CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEE
Confidence                     3699999999999999999999999999875421  11111                     112234679


Q ss_pred             EECCCCCEEEEEEecc
Q 019384          292 SFSRDGRLLAVASSYT  307 (342)
Q Consensus       292 ~~spdg~~las~s~~~  307 (342)
                      +|+|||++|++++.++
T Consensus       312 a~~~d~~~l~~~~~dg  327 (355)
T 3vu4_A          312 AWISESSLVVVWPHTR  327 (355)
T ss_dssp             EESSSSEEEEEETTTT
T ss_pred             EEeCCCCEEEEEeCCC
Confidence            9999999999998644

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=1.4e-28  Score=220.25  Aligned_cols=249  Identities=18%  Similarity=0.204  Sum_probs=179.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCC-CCeEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDD-SSGFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~-~~~~s~s~D~~i~~w~~~~~~~   93 (342)
                      .+|...|.+++|+|++++|++++.|+.|++|+........ ...+...+..+.+.+. ..+++++.|+.+++|+......
T Consensus        83 ~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~  162 (340)
T 4aow_A           83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK  162 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce
Confidence            5789999999999999999999999999999998765443 3456777888888754 4567999999999999876653


Q ss_pred             --eecccCCcceeEEEEeCCC--CEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEE--EeccCCeEEEEEcCCe
Q 019384           94 --DILGKHDAPVRCIEYSYAA--GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYS--LSLVGNRLVVATAGRH  167 (342)
Q Consensus        94 --~~~~~h~~~V~~~~~~~~~--~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~--~s~~~~~~~~~s~d~~  167 (342)
                        ..+.+|...|.+++|++++  ..+++++.|++|++||+++...  ...+..  +...+.+  ++++++.+++++.|++
T Consensus       163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~--~~~~~~--h~~~v~~~~~s~~~~~l~s~s~Dg~  238 (340)
T 4aow_A          163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL--KTNHIG--HTGYLNTVTVSPDGSLCASGGKDGQ  238 (340)
T ss_dssp             EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE--EEEECC--CSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce--eeEecC--CCCcEEEEEECCCCCEEEEEeCCCe
Confidence              3457899999999999865  4678999999999999875432  122222  3344544  4556678999999999


Q ss_pred             EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384          168 VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN  247 (342)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  247 (342)
                      |++||+++...... .  .....+.++.++|++. +++++.++.+  ++||.......  ..+..+........+...|+
T Consensus       239 i~iwd~~~~~~~~~-~--~~~~~v~~~~~~~~~~-~~~~~~d~~i--~iwd~~~~~~~--~~~~~~~~~~~~~~h~~~v~  310 (340)
T 4aow_A          239 AMLWDLNEGKHLYT-L--DGGDIINALCFSPNRY-WLCAATGPSI--KIWDLEGKIIV--DELKQEVISTSSKAEPPQCT  310 (340)
T ss_dssp             EEEEETTTTEEEEE-E--ECSSCEEEEEECSSSS-EEEEEETTEE--EEEETTTTEEE--EEECCC-------CCCCCEE
T ss_pred             EEEEEeccCceeee-e--cCCceEEeeecCCCCc-eeeccCCCEE--EEEECCCCeEE--EeccccceeeeccCCCCCEE
Confidence            99999987643221 1  1223567888888876 4556667765  56887543221  11111111111122334799


Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEeCCCce
Q 019384          248 AIAFHPIYGTFATGGCDGFVNVWDGNNKK  276 (342)
Q Consensus       248 ~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~  276 (342)
                      +++|+|++++|++|+.||+|+|||+++|+
T Consensus       311 ~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          311 SLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            99999999999999999999999998875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=2.6e-29  Score=226.26  Aligned_cols=245  Identities=15%  Similarity=0.129  Sum_probs=179.5

Q ss_pred             CCCCCeEEEEEcCC---CCeEEEEeCCCcEEEEECCCce--eeeeeecCCceEEEEE------eCCC-CeEEEecCCcEE
Q 019384           17 PPSDGISNLRFSNH---SDHLLVSSWDKSVRLYDASANV--LRGEFMHGGPVLDCCF------HDDS-SGFSASADHTVR   84 (342)
Q Consensus        17 ~~~~~V~~l~fs~~---~~~l~s~s~Dgti~vwd~~~~~--~~~~~~h~~~V~~~~~------~~~~-~~~s~s~D~~i~   84 (342)
                      .|...|++++|+|+   +++|++++.||+|++||+.++.  ......|.+.|.++.|      ++++ .+++++.|+.++
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~  142 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK  142 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence            67889999999998   6999999999999999998765  4445579999999966      4444 467999999999


Q ss_pred             EEEeccCc--eeecccCC----cceeEEE----EeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec
Q 019384           85 RLVFSHGK--EDILGKHD----APVRCIE----YSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL  154 (342)
Q Consensus        85 ~w~~~~~~--~~~~~~h~----~~V~~~~----~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~  154 (342)
                      +|++.++.  ...+..|.    ..|.+++    |+|++..|++++.|+.|++||+++...   .....  +...+.++.+
T Consensus       143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~--~~~~v~~~~~  217 (357)
T 3i2n_A          143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL---RWETN--IKNGVCSLEF  217 (357)
T ss_dssp             EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE---EEEEE--CSSCEEEEEE
T ss_pred             EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce---eeecC--CCCceEEEEc
Confidence            99998865  23344333    4799998    678999999999999999999976432   11222  2334555544


Q ss_pred             -----cCCeEEEEEcCCeEEEEeCCCCCCccccc---ccccceeeEEEEEeeCCc-eEEEEccCCeEEEEEeechhhhhc
Q 019384          155 -----VGNRLVVATAGRHVNVYDLRNMSQPEQRR---ESSLKYQTRCVRCYPNGT-GYALSSVEGRVAMEFFDLSEASQA  225 (342)
Q Consensus       155 -----~~~~~~~~s~d~~v~iwd~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~-~~~~~s~~~~~~i~~~d~~~~~~~  225 (342)
                           +++.+++++.|+.|++||+++........   .......+.+++++|++. .+++++.|+.+.  +||+......
T Consensus       218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~--iwd~~~~~~~  295 (357)
T 3i2n_A          218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLH--LWKYEYPIQR  295 (357)
T ss_dssp             SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEE--EEEEECCSCC
T ss_pred             CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEE--EeecCCCccc
Confidence                 45789999999999999998753321111   013345688999999988 788999999765  5887543221


Q ss_pred             c-----------------cceeeeEEecCCCCceeeeeeEEEEcCCCCeEE-EecCCCeEEEEeCCCcee
Q 019384          226 K-----------------KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFA-TGGCDGFVNVWDGNNKKR  277 (342)
Q Consensus       226 ~-----------------~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~-sgs~Dg~I~iWd~~~~~~  277 (342)
                      .                 ...+..|         ..+|.+++|+|++++|+ +|+.||.|+|||+.+.+.
T Consensus       296 ~~~~~~g~~~~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          296 SKKDSEGIEMGVAGSVSLLQNVTLS---------TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             --CCTTSCCCCCCCEEEEEEEEECC---------SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             ccccCCCCccccccccceeeccccC---------CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            1                 1112222         23699999999999998 899999999999987543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=2.3e-28  Score=244.10  Aligned_cols=274  Identities=16%  Similarity=0.180  Sum_probs=204.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCc-
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK-   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~-   92 (342)
                      ..|...|++++|+|++++|++++.||+|+|||+.+++... ...|.+.|.+++|++++. +++++.|+.+++|++.++. 
T Consensus        52 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~  131 (814)
T 3mkq_A           52 QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA  131 (814)
T ss_dssp             ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE
T ss_pred             ecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce
Confidence            3688999999999999999999999999999998876544 456999999999997775 5789999999999998864 


Q ss_pred             -eeecccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeE
Q 019384           93 -EDILGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHV  168 (342)
Q Consensus        93 -~~~~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v  168 (342)
                       ...+.+|...|.+++|+| ++..|++++.|++|++||+++.... ...............+++  ++..+++++.|+.|
T Consensus       132 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i  210 (814)
T 3mkq_A          132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN-FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI  210 (814)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS-EEEECCCTTCCCEEEECCSTTCCEEEEECTTSEE
T ss_pred             EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce-eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEE
Confidence             346778999999999999 7889999999999999998754432 111122223344556666  66789999999999


Q ss_pred             EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384          169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA  248 (342)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  248 (342)
                      ++||+++.......  ......+.+++++|++..+++++.++.+.  +||......  ...+..|.         .++.+
T Consensus       211 ~~~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~v~--vwd~~~~~~--~~~~~~~~---------~~v~~  275 (814)
T 3mkq_A          211 KIWDYQTKSCVATL--EGHMSNVSFAVFHPTLPIIISGSEDGTLK--IWNSSTYKV--EKTLNVGL---------ERSWC  275 (814)
T ss_dssp             EEEETTTTEEEEEE--ECCSSCEEEEEECSSSSEEEEEETTSCEE--EEETTTCSE--EEEECCSS---------SSEEE
T ss_pred             EEEECCCCcEEEEE--cCCCCCEEEEEEcCCCCEEEEEeCCCeEE--EEECCCCcE--EEEeecCC---------CcEEE
Confidence            99999876432211  12334678999999999999999999865  588854322  12222221         26899


Q ss_pred             EEEcCCCCe-EEEecCCCeEEEEeCCCc----------eeee---------------------------------ccCCC
Q 019384          249 IAFHPIYGT-FATGGCDGFVNVWDGNNK----------KRLY---------------------------------QYSKY  284 (342)
Q Consensus       249 v~~sp~~~~-l~sgs~Dg~I~iWd~~~~----------~~~~---------------------------------~~~~~  284 (342)
                      ++|+|++.. +++++.|+.+.+|+....          +.+.                                 .+..+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (814)
T 3mkq_A          276 IATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSV  355 (814)
T ss_dssp             EEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCC
T ss_pred             EEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCC
Confidence            999999873 244445677888886432          1111                                 11234


Q ss_pred             CcceEEEEECCCCCEEEEEEe
Q 019384          285 PTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       285 ~~~V~~v~~spdg~~las~s~  305 (342)
                      ...+.+++|+|||++|++++.
T Consensus       356 ~~~~~~~~~spdg~~la~~~~  376 (814)
T 3mkq_A          356 DVFPQSLAHSPNGRFVTVVGD  376 (814)
T ss_dssp             SSCCSEEEECTTSSEEEEEET
T ss_pred             ccCCceeEECCCCCEEEEecC
Confidence            456899999999999999874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.8e-28  Score=229.17  Aligned_cols=275  Identities=10%  Similarity=0.013  Sum_probs=194.9

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce---eeeee---------------------------------------
Q 019384           20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANV---LRGEF---------------------------------------   57 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~---~~~~~---------------------------------------   57 (342)
                      ..|.+++|+++|++|+++ .++.|++||+.+++   .+...                                       
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            357899999999966554 68899999987765   33222                                       


Q ss_pred             ----------------ecCCceEEEEEeCCCCe--EEEecCCcEEEEEec--cCce-eecc--cCCcceeEEEEeCCCCE
Q 019384           58 ----------------MHGGPVLDCCFHDDSSG--FSASADHTVRRLVFS--HGKE-DILG--KHDAPVRCIEYSYAAGQ  114 (342)
Q Consensus        58 ----------------~h~~~V~~~~~~~~~~~--~s~s~D~~i~~w~~~--~~~~-~~~~--~h~~~V~~~~~~~~~~~  114 (342)
                                      .|.+.|.+++|++++..  ++++.|+.|++|++.  ++.. ..+.  .|...|.+++|+|++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                            23346999999987765  578899999999998  6553 3343  57789999999999999


Q ss_pred             EEEeeCCCcEEEEcCCCCCCcc--eeeeeecCCCCcEEEEecc---CCeEEEEEcCCeEEEEeCCCCCCcccccccccce
Q 019384          115 VITGSWDKSLKCWDPRGASGQE--RTLVGTYPQPERVYSLSLV---GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKY  189 (342)
Q Consensus       115 l~sgs~D~~I~iWd~~~~~~~~--~~~~~~~~~~~~v~~~s~~---~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~  189 (342)
                      |++|+.|+.|++||+.+.....  ...+..+......+.++.+   +..+++++.|++|++||+++...... .......
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~h~~  242 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK-WLFGHKH  242 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE-ECCCCSS
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee-eecCCCC
Confidence            9999999999999987543321  1122333333333445555   55899999999999999987643322 1223345


Q ss_pred             eeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEec----------------CCCCceeeeeeEEEEcC
Q 019384          190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKS----------------EAGRDIVYPVNAIAFHP  253 (342)
Q Consensus       190 ~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~----------------~~~~~~~~~v~~v~~sp  253 (342)
                      .+.+++++ ++..+++++.|+.+  ++||+........  +..+...                .........|.+++|+|
T Consensus       243 ~v~~~~~s-d~~~l~s~~~d~~v--~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  317 (450)
T 2vdu_B          243 FVSSICCG-KDYLLLSAGGDDKI--FAWDWKTGKNLST--FDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK  317 (450)
T ss_dssp             CEEEEEEC-STTEEEEEESSSEE--EEEETTTCCEEEE--EECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred             ceEEEEEC-CCCEEEEEeCCCeE--EEEECCCCcEeee--ecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence            67899999 99999999999976  4599865432222  1111000                00001123588999999


Q ss_pred             CCCeEEEec-CCCeEEEEeC--CCc---eeeeccCCCCcceEEEEECCCCCEEEE
Q 019384          254 IYGTFATGG-CDGFVNVWDG--NNK---KRLYQYSKYPTSIAALSFSRDGRLLAV  302 (342)
Q Consensus       254 ~~~~l~sgs-~Dg~I~iWd~--~~~---~~~~~~~~~~~~V~~v~~spdg~~las  302 (342)
                      ++++|++++ .|+.|+||++  .++   +.+..+..| ..|.+++|+|++.++++
T Consensus       318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~  371 (450)
T 2vdu_B          318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTL  371 (450)
T ss_dssp             SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEE
Confidence            999999988 8999999999  554   566777777 88999999996544433

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=8e-29  Score=226.82  Aligned_cols=249  Identities=14%  Similarity=0.120  Sum_probs=187.2

Q ss_pred             eeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc-------eeecccCCcceeEEEEeCC----C---CEEEEeeCC
Q 019384           56 EFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK-------EDILGKHDAPVRCIEYSYA----A---GQVITGSWD  121 (342)
Q Consensus        56 ~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~-------~~~~~~h~~~V~~~~~~~~----~---~~l~sgs~D  121 (342)
                      ..+|.+.|++++|++ ..+++++.|+.|++|++.+..       ...+.+|...|.+++|+|+    +   .+|++++.|
T Consensus        12 ~~~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d   90 (397)
T 1sq9_A           12 GKAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS   90 (397)
T ss_dssp             SSCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred             hhhhhcCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence            347999999999988 677899999999999998876       4567789999999999999    8   899999999


Q ss_pred             CcEEEEcCCCCCCcc---eeeeeecCC---CCcEEE--Ee----ccCCe-EEEEEcCCeEEEEeCCC------CCCcc--
Q 019384          122 KSLKCWDPRGASGQE---RTLVGTYPQ---PERVYS--LS----LVGNR-LVVATAGRHVNVYDLRN------MSQPE--  180 (342)
Q Consensus       122 ~~I~iWd~~~~~~~~---~~~~~~~~~---~~~v~~--~s----~~~~~-~~~~s~d~~v~iwd~~~------~~~~~--  180 (342)
                      +.|++||+++.....   ...+..+..   ...+.+  ++    .+++. +++++.|+.|++||+++      .....  
T Consensus        91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  170 (397)
T 1sq9_A           91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS  170 (397)
T ss_dssp             SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred             CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeecc
Confidence            999999987543211   112222210   144544  44    44668 99999999999999987      33221  


Q ss_pred             ---cccc-----cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeee---EEecCCCCceeeeeeEE
Q 019384          181 ---QRRE-----SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKC---HRKSEAGRDIVYPVNAI  249 (342)
Q Consensus       181 ---~~~~-----~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~---h~~~~~~~~~~~~v~~v  249 (342)
                         ....     ......+.+++++|++ .+++++.++.+  ++||.+....  ...+..   |...      ..+|.++
T Consensus       171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i--~i~d~~~~~~--~~~~~~~~~h~~~------~~~i~~i  239 (397)
T 1sq9_A          171 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTV--QISELSTLRP--LYNFESQHSMINN------SNSIRSV  239 (397)
T ss_dssp             CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEE--EEEETTTTEE--EEEEECCC---CC------CCCEEEE
T ss_pred             CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcE--EEEECCCCce--eEEEecccccccc------CCccceE
Confidence               1100     1224457889999999 99999999976  4599865322  223333   3100      2369999


Q ss_pred             EEcCCCCeEEEecCC---CeEEEEeCCCceeeeccCC-------------CCcceEEEEECCCCCEEEEEEeccccCCCC
Q 019384          250 AFHPIYGTFATGGCD---GFVNVWDGNNKKRLYQYSK-------------YPTSIAALSFSRDGRLLAVASSYTFEEGDK  313 (342)
Q Consensus       250 ~~sp~~~~l~sgs~D---g~I~iWd~~~~~~~~~~~~-------------~~~~V~~v~~spdg~~las~s~~~~~~~~~  313 (342)
                      +|+|++.+|++++.|   |.|++||+++++.+..+.+             |...|.+++|+||+++|++++.+.      
T Consensus       240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------  313 (397)
T 1sq9_A          240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG------  313 (397)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS------
T ss_pred             EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC------
Confidence            999999999999999   9999999999988888888             999999999999999999998654      


Q ss_pred             CCCCCcEEEEEccC
Q 019384          314 PHEPDAIFVRSVNE  327 (342)
Q Consensus       314 ~~~~~~~~~~~~~~  327 (342)
                           .|.+|++..
T Consensus       314 -----~i~iwd~~~  322 (397)
T 1sq9_A          314 -----KLRFWDVKT  322 (397)
T ss_dssp             -----EEEEEETTT
T ss_pred             -----eEEEEEcCC
Confidence                 466666643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=5e-29  Score=226.92  Aligned_cols=203  Identities=13%  Similarity=0.111  Sum_probs=148.6

Q ss_pred             CCCCCCeEEEEEcCCCCeEEE--EeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLV--SSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s--~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~   93 (342)
                      ..+.+.+.+++|||||++||+  ++.|++|||||+.+++.+..+.|.+.|.+++|+|+++++..+.++.+++|+..++..
T Consensus       130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~  209 (365)
T 4h5i_A          130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSC  209 (365)
T ss_dssp             CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCE
T ss_pred             CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcc
Confidence            345667999999999999865  457999999999998888888899999999999998887666677788888777663


Q ss_pred             ---eecccCCcceeEEEEeCCCCEEEEeeCCC----cEEEEcCCCCCCcceeeeeecCCCCcEE--EEeccCCeEEEEEc
Q 019384           94 ---DILGKHDAPVRCIEYSYAAGQVITGSWDK----SLKCWDPRGASGQERTLVGTYPQPERVY--SLSLVGNRLVVATA  164 (342)
Q Consensus        94 ---~~~~~h~~~V~~~~~~~~~~~l~sgs~D~----~I~iWd~~~~~~~~~~~~~~~~~~~~v~--~~s~~~~~~~~~s~  164 (342)
                         .....|...|.+++|+|+++.+++++.|+    ++++||+...............+...+.  +++++++.|++++.
T Consensus       210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~  289 (365)
T 4h5i_A          210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN  289 (365)
T ss_dssp             EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred             eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence               24567999999999999999999999887    6888887543211111111112223333  34445567777777


Q ss_pred             CCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceee
Q 019384          165 GRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVY  244 (342)
Q Consensus       165 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~  244 (342)
                      |++|+|||+++++.                                              .. ..+.+|.         .
T Consensus       290 D~~V~iwd~~~~~~----------------------------------------------~~-~~~~gH~---------~  313 (365)
T 4h5i_A          290 DNSIALVKLKDLSM----------------------------------------------SK-IFKQAHS---------F  313 (365)
T ss_dssp             TSCEEEEETTTTEE----------------------------------------------EE-EETTSSS---------S
T ss_pred             CCEEEEEECCCCcE----------------------------------------------EE-EecCccc---------C
Confidence            77777777765310                                              00 0012232         2


Q ss_pred             eeeEEEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384          245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       245 ~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~  274 (342)
                      +|++|+|+|||++|||||.|++|||||+..
T Consensus       314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          314 AITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            699999999999999999999999999853

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=9.4e-29  Score=227.57  Aligned_cols=248  Identities=13%  Similarity=0.128  Sum_probs=185.0

Q ss_pred             CCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCce--------eeeeeecCCceEEEEEeCCC--CeEEEecCCcEE
Q 019384           16 NPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANV--------LRGEFMHGGPVLDCCFHDDS--SGFSASADHTVR   84 (342)
Q Consensus        16 ~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~--------~~~~~~h~~~V~~~~~~~~~--~~~s~s~D~~i~   84 (342)
                      ..|.+.|++++|+| ++++|++|+.||+|+|||+.++.        +....+|.+.|.+++|++++  .+++++.|+.|+
T Consensus        78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~  157 (402)
T 2aq5_A           78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVIL  157 (402)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEE
T ss_pred             ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEE
Confidence            57899999999999 99999999999999999997752        34455799999999999775  467999999999


Q ss_pred             EEEeccCce-eec--ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeee-eecCCC-CcEEEEeccCCeE
Q 019384           85 RLVFSHGKE-DIL--GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLV-GTYPQP-ERVYSLSLVGNRL  159 (342)
Q Consensus        85 ~w~~~~~~~-~~~--~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~-~~~~~~-~~v~~~s~~~~~~  159 (342)
                      +||+.+++. ..+  ..|...|.+++|+|++++|++++.|++|++||+++...  ...+ ..+... .....++.++..+
T Consensus       158 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l  235 (402)
T 2aq5_A          158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV--VAEKDRPHEGTRPVHAVFVSEGKIL  235 (402)
T ss_dssp             EEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE--EEEEECSSCSSSCCEEEECSTTEEE
T ss_pred             EEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce--eeeeccCCCCCcceEEEEcCCCcEE
Confidence            999998774 345  68999999999999999999999999999999986432  1122 222221 2334555566677


Q ss_pred             EEE---EcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEE-EccCCeEEEEEeechhhhhcccceeeeEEe
Q 019384          160 VVA---TAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYAL-SSVEGRVAMEFFDLSEASQAKKYAFKCHRK  235 (342)
Q Consensus       160 ~~~---s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~  235 (342)
                      +++   +.|+.|++||+++...+...........+.+++++|++..+++ ++.|+.+.  +||...... ....+..|..
T Consensus       236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~--i~d~~~~~~-~~~~l~~~~~  312 (402)
T 2aq5_A          236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIR--YFEITSEAP-FLHYLSMFSS  312 (402)
T ss_dssp             EEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEE--EEEECSSTT-CEEEEEEECC
T ss_pred             EEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEE--EEEecCCCc-ceEeeccccc
Confidence            777   6889999999988654332222233345788899999998864 55688764  588864431 1222333321


Q ss_pred             cCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCcee
Q 019384          236 SEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKR  277 (342)
Q Consensus       236 ~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~  277 (342)
                             ..+|.+++|+|++.++++  .|+.+++|++.++..
T Consensus       313 -------~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          313 -------KESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             -------SSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             -------CCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence                   136999999999988765  466999999887543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=1.4e-27  Score=218.62  Aligned_cols=254  Identities=16%  Similarity=0.190  Sum_probs=181.1

Q ss_pred             CCCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCC----CeEEEecCCcEEEEEecc
Q 019384           16 NPPSDGISNLRFSN-HSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDS----SGFSASADHTVRRLVFSH   90 (342)
Q Consensus        16 ~~~~~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~----~~~s~s~D~~i~~w~~~~   90 (342)
                      ..|...|++++|+| ++++|++++.||+|++||+.++.......+...+.++.|.+..    .+++++.|+.+++|++.+
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  175 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS  175 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence            45899999999999 7889999999999999999998888888899999999997533    357899999999999988


Q ss_pred             Cc-eeecccCCcceeEEEEeCCCC-EEEEeeCCCcEEEEcCCCCCCcceeee------------eecCCCCcEEEEec--
Q 019384           91 GK-EDILGKHDAPVRCIEYSYAAG-QVITGSWDKSLKCWDPRGASGQERTLV------------GTYPQPERVYSLSL--  154 (342)
Q Consensus        91 ~~-~~~~~~h~~~V~~~~~~~~~~-~l~sgs~D~~I~iWd~~~~~~~~~~~~------------~~~~~~~~v~~~s~--  154 (342)
                      +. ...+..|...|.+++|+|++. .|++|+.|+.|++||+++.........            ....+...+.++.+  
T Consensus       176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  255 (408)
T 4a11_B          176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS  255 (408)
T ss_dssp             SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred             cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence            76 446778999999999999988 589999999999999976432111100            00123334555544  


Q ss_pred             cCCeEEEEEcCCeEEEEeCCCCCCccccccccc---ceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceee
Q 019384          155 VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSL---KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFK  231 (342)
Q Consensus       155 ~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~  231 (342)
                      +++.+++++.|+.|++||+++............   ............+..+++++.++.+  ++||......  ...+.
T Consensus       256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~v~d~~~~~~--~~~~~  331 (408)
T 4a11_B          256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTI--AVYTVYSGEQ--ITMLK  331 (408)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEE--EEEETTTCCE--EEEEC
T ss_pred             CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEE--EEEECcCCcc--eeeec
Confidence            566899999999999999988654221111100   0011111222334556677777765  5699864322  22334


Q ss_pred             eEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC
Q 019384          232 CHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS  282 (342)
Q Consensus       232 ~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  282 (342)
                      +|.         .+|.+++|+|++++|++|+.||.|++||+++++.+....
T Consensus       332 ~~~---------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  373 (408)
T 4a11_B          332 GHY---------KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD  373 (408)
T ss_dssp             CCS---------SCEEEEEEETTTTEEEEEETTSCEEEEEECC--------
T ss_pred             cCC---------CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence            443         369999999999999999999999999999887665443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=2.6e-28  Score=215.74  Aligned_cols=208  Identities=17%  Similarity=0.264  Sum_probs=155.1

Q ss_pred             ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc----CCeEEEEEcCCeEEE
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV----GNRLVVATAGRHVNV  170 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~----~~~~~~~s~d~~v~i  170 (342)
                      .+.+|...|++++|+|++++|+||+.|++|++||+..........+..  +...|.++.+.    ++.+++++.|++|++
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g--H~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG--HEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC--CSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc--ccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            457899999999999999999999999999999986432222222333  44556666553    578999999999999


Q ss_pred             EeCCCCCCcccccccccceeeEEEEEeeC--CceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384          171 YDLRNMSQPEQRRESSLKYQTRCVRCYPN--GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA  248 (342)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  248 (342)
                      ||++++..............+.+++++|+  +..+++++.|+.+.  +||.+.........+..|.         ..|.+
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~--~wd~~~~~~~~~~~~~~h~---------~~v~~  150 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS--VVEFKENGTTSPIIIDAHA---------IGVNS  150 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE--EEEBCSSSCBCCEEEECCS---------SCEEE
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEE--EEEecCCCceeeeeeeccc---------Cccce
Confidence            99987532111111223446889999997  78899999999875  5887643222223334443         26999


Q ss_pred             EEEcCC-------------CCeEEEecCCCeEEEEeCCCce----eeeccCCCCcceEEEEECCCC---CEEEEEEeccc
Q 019384          249 IAFHPI-------------YGTFATGGCDGFVNVWDGNNKK----RLYQYSKYPTSIAALSFSRDG---RLLAVASSYTF  308 (342)
Q Consensus       249 v~~sp~-------------~~~l~sgs~Dg~I~iWd~~~~~----~~~~~~~~~~~V~~v~~spdg---~~las~s~~~~  308 (342)
                      ++|+|+             +++|++|+.|++|+|||.++++    ....+.+|...|.+++|+|++   ++||+++.+. 
T Consensus       151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~-  229 (297)
T 2pm7_B          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR-  229 (297)
T ss_dssp             EEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS-
T ss_pred             EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC-
Confidence            999997             4689999999999999987654    556788999999999999995   8999998765 


Q ss_pred             cCCCCCCCCCcEEEEEcc
Q 019384          309 EEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~  326 (342)
                                .|.+|+++
T Consensus       230 ----------~v~iWd~~  237 (297)
T 2pm7_B          230 ----------TCIIWTQD  237 (297)
T ss_dssp             ----------CEEEEEES
T ss_pred             ----------cEEEEEeC
Confidence                      46677664

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=3.3e-28  Score=218.10  Aligned_cols=231  Identities=15%  Similarity=0.141  Sum_probs=175.7

Q ss_pred             ecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCc----eeecccCCcceeEEEEeCCCC-EEEEeeCCCcEEEEcC-C
Q 019384           58 MHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK----EDILGKHDAPVRCIEYSYAAG-QVITGSWDKSLKCWDP-R  130 (342)
Q Consensus        58 ~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~----~~~~~~h~~~V~~~~~~~~~~-~l~sgs~D~~I~iWd~-~  130 (342)
                      .|.+.|.+++|++++. +++++.|+.|++|++....    ...+.+|...|.+++|+|+++ .|++|+.|+.|++||+ +
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~   88 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence            6999999999997665 5789999999999998877    455678999999999999999 9999999999999998 6


Q ss_pred             CCCCcceeeeeecCCCCcEEEEecc-CCeEEEEEcCCeEEEEeCCC---------CCCcccccccccceeeEEEEEeeCC
Q 019384          131 GASGQERTLVGTYPQPERVYSLSLV-GNRLVVATAGRHVNVYDLRN---------MSQPEQRRESSLKYQTRCVRCYPNG  200 (342)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~v~~~s~~-~~~~~~~s~d~~v~iwd~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~  200 (342)
                      +...   ..+....+...+.++.+. ++.+++++.|+.|++||+++         .+.. ...  .....+.+++++|++
T Consensus        89 ~~~~---~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~--~~~~~v~~~~~~~~~  162 (342)
T 1yfq_A           89 SPSF---QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS-NNT--KVKNKIFTMDTNSSR  162 (342)
T ss_dssp             SSSE---EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCS-SSS--SSCCCEEEEEECSSE
T ss_pred             CCce---EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCee-eEE--eeCCceEEEEecCCc
Confidence            5422   222220033445444443 78999999999999999876         3221 111  244567889998876


Q ss_pred             ceEEEEccCCeEEEEEeechh-hhhcccceeeeEEecCCCCceeeeeeEEEEcC-CCCeEEEecCCCeEEEEeCCCc---
Q 019384          201 TGYALSSVEGRVAMEFFDLSE-ASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP-IYGTFATGGCDGFVNVWDGNNK---  275 (342)
Q Consensus       201 ~~~~~~s~~~~~~i~~~d~~~-~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp-~~~~l~sgs~Dg~I~iWd~~~~---  275 (342)
                        +++++.++.+  ++||.+. ...........         +..+|.+++|+| ++.+|++|+.||.|++|+.+..   
T Consensus       163 --l~~~~~d~~i--~i~d~~~~~~~~~~~~~~~---------~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~  229 (342)
T 1yfq_A          163 --LIVGMNNSQV--QWFRLPLCEDDNGTIEESG---------LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD  229 (342)
T ss_dssp             --EEEEESTTEE--EEEESSCCTTCCCEEEECS---------CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred             --EEEEeCCCeE--EEEECCccccccceeeecC---------CCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcc
Confidence              8888888876  4599864 22211111111         123689999999 9999999999999999998876   


Q ss_pred             ---eeeeccCCCCc---------ceEEEEECCCCCEEEEEEecc
Q 019384          276 ---KRLYQYSKYPT---------SIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       276 ---~~~~~~~~~~~---------~V~~v~~spdg~~las~s~~~  307 (342)
                         +....+..|..         .|.+++|+||+++|++++.++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  273 (342)
T 1yfq_A          230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG  273 (342)
T ss_dssp             TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred             cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc
Confidence               56666777755         999999999999999998754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.9e-27  Score=210.08  Aligned_cols=233  Identities=15%  Similarity=0.099  Sum_probs=179.5

Q ss_pred             eeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCC
Q 019384           54 RGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA  132 (342)
Q Consensus        54 ~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~  132 (342)
                      ....+|.+.|.+++|.++..+++++.|+.|++|++.+.. ...+..|...|.+++|+|+++.|++++.|+.|++|++...
T Consensus        12 ~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~   91 (313)
T 3odt_A           12 ATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT   91 (313)
T ss_dssp             EEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred             HHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence            345579999999999656667899999999999998776 3456789999999999999999999999999999998754


Q ss_pred             CCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEee-CCceEEEEccCCe
Q 019384          133 SGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYP-NGTGYALSSVEGR  211 (342)
Q Consensus       133 ~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~s~~~~  211 (342)
                      .... .......+...+.+++++++.+++++.|+.|++||...   .... .......+.++.++| ++..+++++.++.
T Consensus        92 ~~~~-~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~---~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  166 (313)
T 3odt_A           92 SGED-PLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGS---LVYN-LQAHNASVWDAKVVSFSENKFLTASADKT  166 (313)
T ss_dssp             TTSC-C-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTE---EEEE-EECCSSCEEEEEEEETTTTEEEEEETTSC
T ss_pred             CCCC-cccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCc---EEEe-cccCCCceeEEEEccCCCCEEEEEECCCC
Confidence            3211 11112234566778888889999999999999999321   1111 112334577888888 8899999999998


Q ss_pred             EEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEE
Q 019384          212 VAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAAL  291 (342)
Q Consensus       212 ~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v  291 (342)
                      +.  +||....    ...+..        .+...|.+++|+|++. |++|+.||.|++||.++++.+..+.+|...|.++
T Consensus       167 i~--i~d~~~~----~~~~~~--------~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  231 (313)
T 3odt_A          167 IK--LWQNDKV----IKTFSG--------IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCI  231 (313)
T ss_dssp             EE--EEETTEE----EEEECS--------SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EE--EEecCce----EEEEec--------cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEE
Confidence            75  5884221    111111        1223689999999988 9999999999999999999999999999999999


Q ss_pred             EECCCCCEEEEEEecc
Q 019384          292 SFSRDGRLLAVASSYT  307 (342)
Q Consensus       292 ~~spdg~~las~s~~~  307 (342)
                      +|+|++ .|++++.+.
T Consensus       232 ~~~~~~-~l~~~~~dg  246 (313)
T 3odt_A          232 KLLPNG-DIVSCGEDR  246 (313)
T ss_dssp             EECTTS-CEEEEETTS
T ss_pred             EEecCC-CEEEEecCC
Confidence            999999 477777644

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.8e-28  Score=221.73  Aligned_cols=243  Identities=13%  Similarity=0.187  Sum_probs=186.3

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee-ecCCc---------------eEEEEEeCCCCeEEEec
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF-MHGGP---------------VLDCCFHDDSSGFSASA   79 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~-~h~~~---------------V~~~~~~~~~~~~s~s~   79 (342)
                      ..|...|++++|+|++++|++++.|++|++||+.++.....+ .+...               +.+++|++++.+++++.
T Consensus       146 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (425)
T 1r5m_A          146 NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP  225 (425)
T ss_dssp             CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECG
T ss_pred             cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC
Confidence            468899999999999999999999999999999887655443 34444               89999998888999999


Q ss_pred             CCcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC-
Q 019384           80 DHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN-  157 (342)
Q Consensus        80 D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~-  157 (342)
                      |+.+++|++.++.. ..+..|...|.+++|+|+++.|++++.|+.|++||+++....  ..+..  +...+.++.+.++ 
T Consensus       226 ~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~--~~~~i~~~~~~~~~  301 (425)
T 1r5m_A          226 KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ--NCFYG--HSQSIVSASWVGDD  301 (425)
T ss_dssp             GGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS--EEECC--CSSCEEEEEEETTT
T ss_pred             CCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc--eEecC--CCccEEEEEECCCC
Confidence            99999999988763 456789999999999999999999999999999998754321  22222  3344555555433 


Q ss_pred             eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhc------------
Q 019384          158 RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQA------------  225 (342)
Q Consensus       158 ~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~------------  225 (342)
                      .+++++.|+.|++||+++.......  ......+.+++++|+++.+++++.++.+.  +||+......            
T Consensus       302 ~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~--i~~~~~~~~~~~~~~~~~~~~~  377 (425)
T 1r5m_A          302 KVISCSMDGSVRLWSLKQNTLLALS--IVDGVPIFAGRISQDGQKYAVAFMDGQVN--VYDLKKLNSKSRSLYGNRDGIL  377 (425)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEE--ECTTCCEEEEEECTTSSEEEEEETTSCEE--EEECHHHHC-------------
T ss_pred             EEEEEeCCCcEEEEECCCCcEeEec--ccCCccEEEEEEcCCCCEEEEEECCCeEE--EEECCCCccceeeeeccccccc
Confidence            8999999999999999876432211  12334678999999999999999999765  5888654311            


Q ss_pred             ------ccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          226 ------KKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       226 ------~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                            ....+..|..       ..+|.+++|+|++++|++|+.||.|++||++
T Consensus       378 ~~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          378 NPLPIPLYASYQSSQD-------NDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             -CEECCEEEEECCTTC-------CCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             CcccchhhhhhcCccc-------CCceEEEEccCCCceEEEEecCceEEEEeec
Confidence                  1111222210       0069999999999999999999999999975

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=1.3e-27  Score=222.26  Aligned_cols=252  Identities=15%  Similarity=0.236  Sum_probs=179.9

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce-
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~-   93 (342)
                      ..|...|.+++|  ++++|++|+.||+|+|||+.+++... ...|.+.|.++.|++ +.+++++.|+.|++|++.++.. 
T Consensus       170 ~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~  246 (435)
T 1p22_A          170 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDI  246 (435)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCC
T ss_pred             cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCc
Confidence            478899999999  78899999999999999998876544 457999999999964 4778999999999999987763 


Q ss_pred             ---eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEE
Q 019384           94 ---DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNV  170 (342)
Q Consensus        94 ---~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~i  170 (342)
                         ..+.+|...|.+++|  +++.|++|+.|++|++||+++...  ...+.  .+...+.++.++++.+++++.|+.|++
T Consensus       247 ~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~--~~~~~v~~~~~~~~~l~~g~~dg~i~i  320 (435)
T 1p22_A          247 TLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF--VRTLN--GHKRGIACLQYRDRLVVSGSSDNTIRL  320 (435)
T ss_dssp             EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCE--EEEEE--CCSSCEEEEEEETTEEEEEETTSCEEE
T ss_pred             eeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE--EEEEc--CCCCcEEEEEeCCCEEEEEeCCCeEEE
Confidence               456789999999999  578999999999999999976432  12222  244567788888899999999999999


Q ss_pred             EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhc-------ccceeeeEEecCCCCcee
Q 019384          171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQA-------KKYAFKCHRKSEAGRDIV  243 (342)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~-------~~~~~~~h~~~~~~~~~~  243 (342)
                      ||++++......  ......+.++++  ++..+++++.|+.+.  +||.......       ....+..|         .
T Consensus       321 wd~~~~~~~~~~--~~h~~~v~~~~~--~~~~l~sg~~dg~i~--vwd~~~~~~~~~~~~~~~~~~~~~h---------~  385 (435)
T 1p22_A          321 WDIECGACLRVL--EGHEELVRCIRF--DNKRIVSGAYDGKIK--VWDLVAALDPRAPAGTLCLRTLVEH---------S  385 (435)
T ss_dssp             EETTTCCEEEEE--CCCSSCEEEEEC--CSSEEEEEETTSCEE--EEEHHHHTSTTSCTTTTEEEEECCC---------S
T ss_pred             EECCCCCEEEEE--eCCcCcEEEEEe--cCCEEEEEeCCCcEE--EEECCCCCCccccccchheeeccCC---------C
Confidence            999986433221  123345677766  778899999999875  5998654321       11222233         2


Q ss_pred             eeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEEC
Q 019384          244 YPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFS  294 (342)
Q Consensus       244 ~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~s  294 (342)
                      .+|.+++|  ++.+|++|+.||+|++||+.+........ ...+..++.|.
T Consensus       386 ~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~  433 (435)
T 1p22_A          386 GRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYI  433 (435)
T ss_dssp             SCCCCEEE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred             CCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeee
Confidence            36889999  78899999999999999998765443322 22344555554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=3.6e-27  Score=218.51  Aligned_cols=275  Identities=14%  Similarity=0.079  Sum_probs=202.1

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee------eecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccC
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE------FMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHG   91 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~------~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~   91 (342)
                      ...+.+++|+|++.++++++.|++|++||+.+++....      ..|.+.|.+++|++++.+ ++++.|+.+++|++.++
T Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~  201 (433)
T 3bws_A          122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL  201 (433)
T ss_dssp             SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred             CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence            45677999999878888888999999999988765442      268889999999877665 58888999999999887


Q ss_pred             ce-eecccCCcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE--eccCCeEEEEE----
Q 019384           92 KE-DILGKHDAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL--SLVGNRLVVAT----  163 (342)
Q Consensus        92 ~~-~~~~~h~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~--s~~~~~~~~~s----  163 (342)
                      +. ..+..|...+.+++|+|+++.+ ++++.|+.|++||++++..     .........+..+  +.+++.+++++    
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  276 (433)
T 3bws_A          202 AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-----IRKTDKIGLPRGLLLSKDGKELYIAQFSAS  276 (433)
T ss_dssp             CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-----EEECCCCSEEEEEEECTTSSEEEEEEEESC
T ss_pred             eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-----EEEecCCCCceEEEEcCCCCEEEEEECCCC
Confidence            63 4566888999999999999887 4566899999999875322     2222222334444  44566788777    


Q ss_pred             ----cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceE-EEEccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384          164 ----AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGY-ALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA  238 (342)
Q Consensus       164 ----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~  238 (342)
                          .|+.|++||+++++....   ......+.+++++|+++.+ ++++.++.+  ++||........  .+. +     
T Consensus       277 ~~~~~dg~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~g~~l~~~~~~~~~v--~v~d~~~~~~~~--~~~-~-----  343 (433)
T 3bws_A          277 NQESGGGRLGIYSMDKEKLIDT---IGPPGNKRHIVSGNTENKIYVSDMCCSKI--EVYDLKEKKVQK--SIP-V-----  343 (433)
T ss_dssp             TTCSCCEEEEEEETTTTEEEEE---EEEEECEEEEEECSSTTEEEEEETTTTEE--EEEETTTTEEEE--EEE-C-----
T ss_pred             ccccCCCeEEEEECCCCcEEee---ccCCCCcceEEECCCCCEEEEEecCCCEE--EEEECCCCcEEE--Eec-C-----
Confidence                478999999987632211   1223356788999999765 455777765  569986432211  111 1     


Q ss_pred             CCceeeeeeEEEEcCCCCeEEEecC---------------CCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEE
Q 019384          239 GRDIVYPVNAIAFHPIYGTFATGGC---------------DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVA  303 (342)
Q Consensus       239 ~~~~~~~v~~v~~sp~~~~l~sgs~---------------Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~  303 (342)
                          ...+.+++|+|++++|++++.               ||.|++||..+++.+..+.. ...+.+++|+|||++|+++
T Consensus       344 ----~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          344 ----FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             ----SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEE
T ss_pred             ----CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEE
Confidence                124789999999998887765               57999999999888877765 4578999999999999988


Q ss_pred             EeccccCCCCCCCCCcEEEEEcc
Q 019384          304 SSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       304 s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                      +..+   +       .|.+|+++
T Consensus       419 ~~~d---~-------~i~v~~~~  431 (433)
T 3bws_A          419 DFLD---H-------QIRVYRRD  431 (433)
T ss_dssp             ETTT---T-------EEEEEEET
T ss_pred             ECCC---C-------eEEEEEec
Confidence            7532   1       58888875

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=3.1e-28  Score=226.33  Aligned_cols=256  Identities=13%  Similarity=0.144  Sum_probs=179.0

Q ss_pred             eecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCc------------eeecccCC------------cceeEEEEeCC
Q 019384           57 FMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK------------EDILGKHD------------APVRCIEYSYA  111 (342)
Q Consensus        57 ~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~------------~~~~~~h~------------~~V~~~~~~~~  111 (342)
                      ..|.+.|.+++|++++. +++|+.|+.|++|++.+..            ...+.+|.            ..|.+++|+|+
T Consensus        25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            45789999999998765 4689999999999998765            33567898            88999999999


Q ss_pred             C--CEEEEeeCCCcEEEEcCCCCCCcc--------------------------------------eeeeeecCCCCcEEE
Q 019384          112 A--GQVITGSWDKSLKCWDPRGASGQE--------------------------------------RTLVGTYPQPERVYS  151 (342)
Q Consensus       112 ~--~~l~sgs~D~~I~iWd~~~~~~~~--------------------------------------~~~~~~~~~~~~v~~  151 (342)
                      +  ..|++++.|++|++||+.......                                      ......+......+.
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            8  789999999999999975421100                                      000112222333445


Q ss_pred             EeccCCeEEEEEcCCeEEEEeCCCCCCcccc------cccccceeeEEEEEeeCC-ceEEEEccCCeEEEEEeechhhhh
Q 019384          152 LSLVGNRLVVATAGRHVNVYDLRNMSQPEQR------RESSLKYQTRCVRCYPNG-TGYALSSVEGRVAMEFFDLSEASQ  224 (342)
Q Consensus       152 ~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~------~~~~~~~~~~~v~~~~~~-~~~~~~s~~~~~~i~~~d~~~~~~  224 (342)
                      ++.+++.++++ .|+.|++||++........      ....+...+.+++++|++ ..+++++.|+.+.  +||.+....
T Consensus       185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~--iwd~~~~~~  261 (447)
T 3dw8_B          185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR--LCDMRASAL  261 (447)
T ss_dssp             ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE--EEETTTCSS
T ss_pred             EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE--EEECcCCcc
Confidence            55567788888 8999999999843222110      111334568899999998 8999999999765  599865432


Q ss_pred             cc--cceeeeEEecCCC---CceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC-ceeeeccCCCCcc-----------
Q 019384          225 AK--KYAFKCHRKSEAG---RDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN-KKRLYQYSKYPTS-----------  287 (342)
Q Consensus       225 ~~--~~~~~~h~~~~~~---~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~-~~~~~~~~~~~~~-----------  287 (342)
                      ..  ...+..|......   ..+..+|.+++|+|++++|++++. ++|++||+++ ++.+..+.+|...           
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~  340 (447)
T 3dw8_B          262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND  340 (447)
T ss_dssp             SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred             ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence            11  2233333320000   001126999999999999999999 9999999987 7778888877532           


Q ss_pred             ----eEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          288 ----IAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       288 ----V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                          +..++|+|||++|++++.+.           .|.+|++..
T Consensus       341 ~i~~~~~~~~s~~~~~l~s~s~dg-----------~v~iwd~~~  373 (447)
T 3dw8_B          341 CIFDKFECCWNGSDSVVMTGSYNN-----------FFRMFDRNT  373 (447)
T ss_dssp             GGGCCCCEEECTTSSEEEEECSTT-----------EEEEEETTT
T ss_pred             ccccceEEEECCCCCEEEEeccCC-----------EEEEEEcCC
Confidence                33499999999999988765           466666653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=8.8e-27  Score=211.23  Aligned_cols=238  Identities=17%  Similarity=0.153  Sum_probs=169.2

Q ss_pred             eeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCCC
Q 019384           56 EFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGASG  134 (342)
Q Consensus        56 ~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~~  134 (342)
                      ...|.+.|.+++|++++.+++++.+..+++|+.......... +...+..+++.++++.+ ++++.|++|++||.+++..
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~   93 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQ-EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD   93 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEE-ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeee-ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence            356999999999999988877666777899998766543222 22357888898888777 6788899999999875432


Q ss_pred             cceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEE--EccCCeE
Q 019384          135 QERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYAL--SSVEGRV  212 (342)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~s~~~~~  212 (342)
                           +........+.++.++++.++++ .++.|++||+.+.........    .....+++++  ..+++  ++.++.+
T Consensus        94 -----~~~~~~~~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~----~~~~~~~~s~--~~la~~sg~~~g~v  161 (355)
T 3vu4_A           94 -----VSRIKVDAPVKDLFLSREFIVVS-YGDVISVFKFGNPWKRITDDI----RFGGVCEFSN--GLLVYSNEFNLGQI  161 (355)
T ss_dssp             -----EEEEECSSCEEEEEECSSEEEEE-ETTEEEEEESSTTCCBSSCCE----EEEEEEEEET--TEEEEEESSCTTCE
T ss_pred             -----EEEEECCCceEEEEEcCCEEEEE-EcCEEEEEECCCCceeeEEec----cCCceEEEEc--cEEEEeCCCcCcEE
Confidence                 12222445678888888876655 578999999987622211111    1223344455  55555  4677876


Q ss_pred             EEEEeechhhhhc--------------ccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCe-EEEEeCCCcee
Q 019384          213 AMEFFDLSEASQA--------------KKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGF-VNVWDGNNKKR  277 (342)
Q Consensus       213 ~i~~~d~~~~~~~--------------~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~-I~iWd~~~~~~  277 (342)
                        ++||.......              ....+.+|.         .+|.+++|+|++.+|++|+.|++ |+|||++++++
T Consensus       162 --~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---------~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~  230 (355)
T 3vu4_A          162 --HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---------NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL  230 (355)
T ss_dssp             --EEEECCC------------------CCEEECCCS---------SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred             --EEEECCCCCccccccccccccccCcccEEEEccC---------CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence              45888643200              023344443         36999999999999999999998 99999999999


Q ss_pred             eeccC-C-CCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccCC
Q 019384          278 LYQYS-K-YPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEI  328 (342)
Q Consensus       278 ~~~~~-~-~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~  328 (342)
                      +..+. + |...|++++|+|||++|++++.+.           .|.+|++++.
T Consensus       231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~-----------~v~iw~~~~~  272 (355)
T 3vu4_A          231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKW-----------TLHVFEIFND  272 (355)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSCEEEEEETTC-----------EEEEEESSCC
T ss_pred             EEEEEcCCCCCcEEEEEECCCCCEEEEEECCC-----------EEEEEEccCC
Confidence            98887 5 999999999999999999998765           5777777543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=3.2e-26  Score=209.27  Aligned_cols=251  Identities=16%  Similarity=0.122  Sum_probs=182.4

Q ss_pred             CeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe--EEEecCCcEEEEEeccCceeecccCCcceeEEEEe
Q 019384           32 DHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG--FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYS  109 (342)
Q Consensus        32 ~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~--~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~  109 (342)
                      ..+++++.|++|++||+.++++...+.+...+.+++|++++..  ++++.|+.|++||+.+++......+...+.+++|+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~s   82 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVS   82 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEEC
Confidence            4678899999999999999887777766677999999988764  46668999999999887754333333489999999


Q ss_pred             CCCCEE-EEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEE--EeccCCeE-EEEEcCCeEEEEeCCCCCCccccccc
Q 019384          110 YAAGQV-ITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYS--LSLVGNRL-VVATAGRHVNVYDLRNMSQPEQRRES  185 (342)
Q Consensus       110 ~~~~~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~--~s~~~~~~-~~~s~d~~v~iwd~~~~~~~~~~~~~  185 (342)
                      |++++| ++++.|++|++||++++..  ...+.   ....+..  ++.+++.+ ++++.++.|++||+++++... ..  
T Consensus        83 pdg~~l~~~~~~~~~v~v~d~~~~~~--~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~--  154 (391)
T 1l0q_A           83 PDGKQVYVTNMASSTLSVIDTTSNTV--AGTVK---TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN-TV--  154 (391)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEE--EEEEE---CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EE--
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCeE--EEEEe---CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-EE--
Confidence            999977 4566779999999875432  11222   2233444  44455666 677778999999998763321 11  


Q ss_pred             ccceeeEEEEEeeCCceE-EEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEec--
Q 019384          186 SLKYQTRCVRCYPNGTGY-ALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGG--  262 (342)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~-~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs--  262 (342)
                      .....+.+++++|+++.+ ++++.++.+  ++||.+.......  +. +         ...+.+++|+|++++|++++  
T Consensus       155 ~~~~~~~~~~~~~dg~~l~~~~~~~~~v--~~~d~~~~~~~~~--~~-~---------~~~~~~~~~~~~g~~l~~~~~~  220 (391)
T 1l0q_A          155 SVGRSPKGIAVTPDGTKVYVANFDSMSI--SVIDTVTNSVIDT--VK-V---------EAAPSGIAVNPEGTKAYVTNVD  220 (391)
T ss_dssp             ECCSSEEEEEECTTSSEEEEEETTTTEE--EEEETTTTEEEEE--EE-C---------SSEEEEEEECTTSSEEEEEEEC
T ss_pred             ecCCCcceEEECCCCCEEEEEeCCCCEE--EEEECCCCeEEEE--Ee-c---------CCCccceEECCCCCEEEEEecC
Confidence            112345788999999877 455667765  5699865422111  11 1         11478899999999998887  


Q ss_pred             -CCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          263 -CDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       263 -~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                       .|+.|++||.++++.+..+..+. .+.+++|+|||++|+++++
T Consensus       221 ~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~  263 (391)
T 1l0q_A          221 KYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALS  263 (391)
T ss_dssp             SSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEET
T ss_pred             cCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcC
Confidence             68999999999988887777664 5789999999998865543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.1e-26  Score=212.59  Aligned_cols=243  Identities=13%  Similarity=0.040  Sum_probs=174.2

Q ss_pred             CCCCCeEEEEEcCCCCeE-EEEeCCCcEEEEECC--Cceeeeee---ecCCceEEEEEeCCCC-eEEEecCCcEEEEEec
Q 019384           17 PPSDGISNLRFSNHSDHL-LVSSWDKSVRLYDAS--ANVLRGEF---MHGGPVLDCCFHDDSS-GFSASADHTVRRLVFS   89 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l-~s~s~Dgti~vwd~~--~~~~~~~~---~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~   89 (342)
                      +|.+.|++++|+|++++| ++++.||+|+|||+.  ++.....+   .|...|.+++|++++. +++++.|+.+++|++.
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~  179 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN  179 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence            566789999999999996 899999999999998  66544443   5778999999997765 5688999999999987


Q ss_pred             cCcee-----ecccCCcceeEEEEeCC---CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEE
Q 019384           90 HGKED-----ILGKHDAPVRCIEYSYA---AGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVV  161 (342)
Q Consensus        90 ~~~~~-----~~~~h~~~V~~~~~~~~---~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~  161 (342)
                      .....     .+.+|...|.+++|+|+   +.+|++|+.|++|++||+++.... ......+......+.++ +++.+++
T Consensus       180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~-~~~~~~h~~~v~~~~~s-d~~~l~s  257 (450)
T 2vdu_B          180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV-DKWLFGHKHFVSSICCG-KDYLLLS  257 (450)
T ss_dssp             SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE-EEECCCCSSCEEEEEEC-STTEEEE
T ss_pred             CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee-eeeecCCCCceEEEEEC-CCCEEEE
Confidence            76533     56789999999999999   889999999999999998764331 11122222223334455 6889999


Q ss_pred             EEcCCeEEEEeCCCCCCccccccc-----------------------ccceeeEEEEEeeCCceEEEEc-cCCeEEEEEe
Q 019384          162 ATAGRHVNVYDLRNMSQPEQRRES-----------------------SLKYQTRCVRCYPNGTGYALSS-VEGRVAMEFF  217 (342)
Q Consensus       162 ~s~d~~v~iwd~~~~~~~~~~~~~-----------------------~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~  217 (342)
                      ++.|++|++||+++++........                       .....+..++++|+++.+++++ .++.+  ++|
T Consensus       258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i--~iw  335 (450)
T 2vdu_B          258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCI--IIL  335 (450)
T ss_dssp             EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEE--EEE
T ss_pred             EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeE--EEE
Confidence            999999999999987532211100                       1123467889999999998888 77765  568


Q ss_pred             ec--hhhhh-cccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecC------CCeEEEEeCC
Q 019384          218 DL--SEASQ-AKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGC------DGFVNVWDGN  273 (342)
Q Consensus       218 d~--~~~~~-~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~------Dg~I~iWd~~  273 (342)
                      ++  ..... .....+..|          ..|.+++|+|++.++++++.      +..|++|.+.
T Consensus       336 ~~~~~~~~~l~~~~~~~~~----------~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          336 EMSEKQKGDLALKQIITFP----------YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EECSSSTTCEEEEEEEECS----------SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             EeccCCCCceeeccEeccC----------CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            87  22211 111112222          25899999996444444443      5568888654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=9.3e-27  Score=213.99  Aligned_cols=239  Identities=13%  Similarity=-0.015  Sum_probs=151.7

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee------eeecCCceEEEEEeC--------CC-CeEEEecCCcE
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG------EFMHGGPVLDCCFHD--------DS-SGFSASADHTV   83 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~------~~~h~~~V~~~~~~~--------~~-~~~s~s~D~~i   83 (342)
                      ...+....+++++..||+++.|++|||||+..+....      ..+|.+.|++++|+|        ++ .+++||.|+++
T Consensus        89 ~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv  168 (393)
T 4gq1_A           89 DGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL  168 (393)
T ss_dssp             --------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred             CCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence            3344445556677889999999999999998764322      347999999999975        33 45799999999


Q ss_pred             EEEEeccCc-eeecccCCcceeEEEEeCCCC-EEEEeeCCCcEEEEcCCCCCCcceeee---------------------
Q 019384           84 RRLVFSHGK-EDILGKHDAPVRCIEYSYAAG-QVITGSWDKSLKCWDPRGASGQERTLV---------------------  140 (342)
Q Consensus        84 ~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~-~l~sgs~D~~I~iWd~~~~~~~~~~~~---------------------  140 (342)
                      ++||+.++. ...+.+|...|.+++|+|++. +|++|+.|++|++||++++........                     
T Consensus       169 ~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  248 (393)
T 4gq1_A          169 IIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC  248 (393)
T ss_dssp             EEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred             EEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence            999998765 445678889999999999874 799999999999999876432110000                     


Q ss_pred             --eecCCCCcEEEEe-ccCCeEEEEEcCCeEEEEeCCCCCCccccccc-----------------ccceeeEEEEEee--
Q 019384          141 --GTYPQPERVYSLS-LVGNRLVVATAGRHVNVYDLRNMSQPEQRRES-----------------SLKYQTRCVRCYP--  198 (342)
Q Consensus       141 --~~~~~~~~v~~~s-~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~-----------------~~~~~~~~v~~~~--  198 (342)
                        ..+......+.+. .++..+++++.|+++++||+............                 .... .....++|  
T Consensus       249 ~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  327 (393)
T 4gq1_A          249 HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPS-LLGACPHPRY  327 (393)
T ss_dssp             ---CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCC-SSCCEECSSC
T ss_pred             ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCc-ceeEEEccCC
Confidence              0011111222333 46778999999999999999765322111000                 0000 01122333  


Q ss_pred             CCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeC
Q 019384          199 NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDG  272 (342)
Q Consensus       199 ~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~  272 (342)
                      ++..+++++.|+.+  ++||......  ...+..|.         .+|.+|+|||||++||+++.|| +.+|.+
T Consensus       328 ~~~~~~sgs~Dg~V--~lwd~~~~~~--~~~~~~~~---------~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          328 MDYFATAHSQHGLI--QLINTYEKDS--NSIPIQLG---------MPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             TTEEEEEETTTTEE--EEEETTCTTC--CEEEEECS---------SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             CCEEEEEECCCCEE--EEEECCCCcE--EEEecCCC---------CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            33345667788876  5699864422  22222332         2699999999999999998776 555543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=2.9e-26  Score=206.81  Aligned_cols=241  Identities=13%  Similarity=0.169  Sum_probs=177.3

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEE--eCCCC-eEEEecCCcEEEEEeccCc
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCF--HDDSS-GFSASADHTVRRLVFSHGK   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~--~~~~~-~~s~s~D~~i~~w~~~~~~   92 (342)
                      ..|...|++++|+|++++|++++.||+|+|||+.++.......|.+.|.+++|  ++++. +++++.|+.|++||+.+++
T Consensus        83 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A           83 QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred             ccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence            46889999999999999999999999999999999888888899999999999  66655 6799999999999998876


Q ss_pred             ee-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC----eEEEEEcCCe
Q 019384           93 ED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN----RLVVATAGRH  167 (342)
Q Consensus        93 ~~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~----~~~~~s~d~~  167 (342)
                      .. .+..| ..+.++.+.+  ..+++++.|+.+++||++..................+..+.....    .+++++.|+.
T Consensus       163 ~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~  239 (368)
T 3mmy_A          163 PMMVLQLP-ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR  239 (368)
T ss_dssp             CSEEEECS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE
T ss_pred             EEEEEecC-CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc
Confidence            43 34444 4667777664  578889999999999987543211111111223334445554443    3999999999


Q ss_pred             EEEEeCCCCCCcccc-cccccce------------eeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEE
Q 019384          168 VNVYDLRNMSQPEQR-RESSLKY------------QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR  234 (342)
Q Consensus       168 v~iwd~~~~~~~~~~-~~~~~~~------------~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~  234 (342)
                      |++||++........ .......            .+.+++++|++..+++++.|+.+.  +||......  ...+..|.
T Consensus       240 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~--iwd~~~~~~--~~~~~~~~  315 (368)
T 3mmy_A          240 VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFS--FWDKDARTK--LKTSEQLD  315 (368)
T ss_dssp             EEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEE--EEETTTTEE--EEECCCCS
T ss_pred             EEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEE--EEECCCCcE--EEEecCCC
Confidence            999999875321110 0011111            478899999999999999999864  599864322  22233332


Q ss_pred             ecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeC
Q 019384          235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDG  272 (342)
Q Consensus       235 ~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~  272 (342)
                               .+|.+++|+|++.+|++|+.|+..+.|+.
T Consensus       316 ---------~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          316 ---------QPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             ---------SCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             ---------CCceEEEECCCCCeEEEEecccccccccc
Confidence                     36999999999999999999886666654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=1e-25  Score=199.06  Aligned_cols=276  Identities=12%  Similarity=0.039  Sum_probs=168.5

Q ss_pred             CeEEEEEcCCCC---eEEEEeCCCcEEEEECCCc---e-eeeeeecCCceEEEEEeCCCCeEEEe--cCC---cEEEEEe
Q 019384           21 GISNLRFSNHSD---HLLVSSWDKSVRLYDASAN---V-LRGEFMHGGPVLDCCFHDDSSGFSAS--ADH---TVRRLVF   88 (342)
Q Consensus        21 ~V~~l~fs~~~~---~l~s~s~Dgti~vwd~~~~---~-~~~~~~h~~~V~~~~~~~~~~~~s~s--~D~---~i~~w~~   88 (342)
                      .+.++.|-..+-   -+++++. .+|++|+..++   + +.....|+.+|..+.|.|+..-+.|-  ..-   .++..-+
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred             EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence            455666665543   3555554 58999999776   3 34445788899999998764322111  111   1111111


Q ss_pred             ccC-----ceeecccCCcceeEEEEeCCCCEEEEee--CCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec---cCCe
Q 019384           89 SHG-----KEDILGKHDAPVRCIEYSYAAGQVITGS--WDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL---VGNR  158 (342)
Q Consensus        89 ~~~-----~~~~~~~h~~~V~~~~~~~~~~~l~sgs--~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~---~~~~  158 (342)
                      ...     ....-.+|...|.++   ++++++.+++  .|++|++|++... +.....+..+.....+.+|++   +++.
T Consensus       120 spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~d-G~~~~s~~~~~~~v~~l~fs~~~g~~~~  195 (356)
T 2w18_A          120 SSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAED-GGGKENQFLMPPEETILTFAEVQGMQEA  195 (356)
T ss_dssp             ------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTT-SCEEEEEEECCCSSCEEEEEEEETSTTE
T ss_pred             CCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCC-CceeeeeccCCCceeeEEeeccCCCCce
Confidence            111     111224466566655   4554444433  5999999998532 222223344555677888888   5579


Q ss_pred             EEEEEcCCeEEEEeCCCCCCcccccccc-cceeeEEEEEeeCCceEEE------------EccCCeEEEEEeechhhhhc
Q 019384          159 LVVATAGRHVNVYDLRNMSQPEQRRESS-LKYQTRCVRCYPNGTGYAL------------SSVEGRVAMEFFDLSEASQA  225 (342)
Q Consensus       159 ~~~~s~d~~v~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~------------~s~~~~~~i~~~d~~~~~~~  225 (342)
                      +++++.|++|++||+.+++........+ ....+.+++|+|++..+++            ++.|+++  ++||.......
T Consensus       196 LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI--klWd~~tgk~l  273 (356)
T 2w18_A          196 LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL--IVINPKTTLSV  273 (356)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEE--EEEETTTTEEE
T ss_pred             EEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE--EEEECCCCEEE
Confidence            9999999999999999875433221111 1123567789999987644            4455544  56887543221


Q ss_pred             cccee---eeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceE-EEEECCCCCEEE
Q 019384          226 KKYAF---KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIA-ALSFSRDGRLLA  301 (342)
Q Consensus       226 ~~~~~---~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~-~v~~spdg~~la  301 (342)
                      ..+.+   .+|.         ..+.+..+  ++..+|+|+.|++|+|||+.+++++.++++|...+. +++|||||++|+
T Consensus       274 ~v~~~~~p~Gh~---------~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La  342 (356)
T 2w18_A          274 GVMLYCLPPGQA---------GRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL  342 (356)
T ss_dssp             EEEEECCCTTCC---------CCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE
T ss_pred             EEEEeeccCCCc---------ceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE
Confidence            11110   0111         11222233  377899999999999999999999999999987665 689999999999


Q ss_pred             EEEeccccCCCCCCCCCcEEEEEc
Q 019384          302 VASSYTFEEGDKPHEPDAIFVRSV  325 (342)
Q Consensus       302 s~s~~~~~~~~~~~~~~~~~~~~~  325 (342)
                      +|+.+.           .|.+|+.
T Consensus       343 SGS~D~-----------TIklWd~  355 (356)
T 2w18_A          343 AGQKDG-----------NIFVYHY  355 (356)
T ss_dssp             EECTTS-----------CEEEEEE
T ss_pred             EEECCC-----------cEEEecC
Confidence            998766           5888864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=5.6e-25  Score=201.03  Aligned_cols=262  Identities=11%  Similarity=0.061  Sum_probs=187.7

Q ss_pred             CCCeEEEEEcCCCCeE-EEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-E-EEecCCcEEEEEeccCceee
Q 019384           19 SDGISNLRFSNHSDHL-LVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-F-SASADHTVRRLVFSHGKEDI   95 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l-~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~-s~s~D~~i~~w~~~~~~~~~   95 (342)
                      ...+.+++|+|++++| ++++.|++|++||+.++++...+.+...+.+++|++++.. + +++.|+.|++||+.+++...
T Consensus        31 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~  110 (391)
T 1l0q_A           31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence            4569999999999987 6777999999999998888777777779999999987764 3 44567999999999887544


Q ss_pred             cccCCcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeE-EEEEcCCeEEEEeC
Q 019384           96 LGKHDAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRL-VVATAGRHVNVYDL  173 (342)
Q Consensus        96 ~~~h~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~-~~~s~d~~v~iwd~  173 (342)
                      ...+...+.+++|+|+++.| ++++.|+.|++||++++..  ...+... .....+.++.+++.+ ++++.++.|++||+
T Consensus       111 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~  187 (391)
T 1l0q_A          111 TVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV--INTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDT  187 (391)
T ss_dssp             EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE--EEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence            43445678999999999877 7888999999999875432  1222211 122233455556666 56677899999999


Q ss_pred             CCCCCcccccccccceeeEEEEEeeCCceEEEEc---cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384          174 RNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS---VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA  250 (342)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s---~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  250 (342)
                      ++...... .  .....+.+++++|+++.+++++   .++.  +++||.......  ..+..|.          .+.+++
T Consensus       188 ~~~~~~~~-~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~--v~~~d~~~~~~~--~~~~~~~----------~~~~~~  250 (391)
T 1l0q_A          188 VTNSVIDT-V--KVEAAPSGIAVNPEGTKAYVTNVDKYFNT--VSMIDTGTNKIT--ARIPVGP----------DPAGIA  250 (391)
T ss_dssp             TTTEEEEE-E--ECSSEEEEEEECTTSSEEEEEEECSSCCE--EEEEETTTTEEE--EEEECCS----------SEEEEE
T ss_pred             CCCeEEEE-E--ecCCCccceEECCCCCEEEEEecCcCCCc--EEEEECCCCeEE--EEEecCC----------CccEEE
Confidence            87632211 1  1233567889999999888887   4554  467998643221  1222221          367899


Q ss_pred             EcCCCCeE-EEecCCCeEEEEeCCCceeeeccCCCCcce---EEEEECCCCCEE
Q 019384          251 FHPIYGTF-ATGGCDGFVNVWDGNNKKRLYQYSKYPTSI---AALSFSRDGRLL  300 (342)
Q Consensus       251 ~sp~~~~l-~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V---~~v~~spdg~~l  300 (342)
                      |+|++++| ++++.|++|++||.++++.+..+..+..+.   ..+.+.|++..+
T Consensus       251 ~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (391)
T 1l0q_A          251 VTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVY  304 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCC
T ss_pred             EccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccc
Confidence            99999877 778999999999999998887776665442   235666665543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=5.1e-26  Score=200.96  Aligned_cols=202  Identities=15%  Similarity=0.064  Sum_probs=137.4

Q ss_pred             cCCCCCCCCeEEEEEcCC----CCeEEEEeC--------------------CCcEEEEECCC-ce-eeeeeecCCceEEE
Q 019384           13 ELGNPPSDGISNLRFSNH----SDHLLVSSW--------------------DKSVRLYDASA-NV-LRGEFMHGGPVLDC   66 (342)
Q Consensus        13 ~~~~~~~~~V~~l~fs~~----~~~l~s~s~--------------------Dgti~vwd~~~-~~-~~~~~~h~~~V~~~   66 (342)
                      -|+|.+...|++|+|+||    ++.+++++.                    |++|++|++.. ++ +.....|...+..+
T Consensus       105 ~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l  184 (356)
T 2w18_A          105 ALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETIL  184 (356)
T ss_dssp             EECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEE
T ss_pred             eeccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeE
Confidence            467888899999999999    888887663                    88888888843 44 33455788888887


Q ss_pred             EEeC---CCC-eEEEecCCcEEEEEeccCce-eecccCC---cceeEEEEeCCCCEE------------EEeeCCCcEEE
Q 019384           67 CFHD---DSS-GFSASADHTVRRLVFSHGKE-DILGKHD---APVRCIEYSYAAGQV------------ITGSWDKSLKC  126 (342)
Q Consensus        67 ~~~~---~~~-~~s~s~D~~i~~w~~~~~~~-~~~~~h~---~~V~~~~~~~~~~~l------------~sgs~D~~I~i  126 (342)
                      +|++   ++. +++++.|++|++||+.+++. ..+.+|.   ..|.+++|+|++..+            +||+.|++|++
T Consensus       185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl  264 (356)
T 2w18_A          185 TFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV  264 (356)
T ss_dssp             EEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred             EeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence            8764   334 56899999999999999874 4565543   467888999999875            67889999999


Q ss_pred             EcCCCCCCcceeeee-e--cCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceE
Q 019384          127 WDPRGASGQERTLVG-T--YPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGY  203 (342)
Q Consensus       127 Wd~~~~~~~~~~~~~-~--~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  203 (342)
                      ||..++...  ..+. .  ..+.....+.+.++..+++++.|++|+|||+.+++..                        
T Consensus       265 Wd~~tgk~l--~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l------------------------  318 (356)
T 2w18_A          265 INPKTTLSV--GVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCT------------------------  318 (356)
T ss_dssp             EETTTTEEE--EEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEE------------------------
T ss_pred             EECCCCEEE--EEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEE------------------------
Confidence            998754221  1110 0  1122234444455667888888999999998765210                        


Q ss_pred             EEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeC
Q 019384          204 ALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDG  272 (342)
Q Consensus       204 ~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~  272 (342)
                                              ..+.+|...        .+.+++|||||++|++|+.|++|+|||.
T Consensus       319 ------------------------~tL~gH~~~--------vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          319 ------------------------ALLPPVSDQ--------HWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ------------------------EEECCC--C--------CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             ------------------------EEecCCCCC--------eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence                                    001122110        2446899999999999999999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.4e-25  Score=198.84  Aligned_cols=232  Identities=12%  Similarity=0.063  Sum_probs=163.1

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC---------ceeee--eeecCCceEEEEEeC--CCCe-EEEecCCcEE
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASA---------NVLRG--EFMHGGPVLDCCFHD--DSSG-FSASADHTVR   84 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~---------~~~~~--~~~h~~~V~~~~~~~--~~~~-~s~s~D~~i~   84 (342)
                      ...|.+++|+|+   ++|++.|++|++|+...         +....  ...|.+.|.+++|++  ++.. ++++.|++++
T Consensus        76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~  152 (343)
T 3lrv_A           76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIG  152 (343)
T ss_dssp             EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEE
T ss_pred             cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEE
Confidence            356777888887   99999999999998753         33222  235778999999988  6654 6899999999


Q ss_pred             EEEeccCceee-c-ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEE
Q 019384           85 RLVFSHGKEDI-L-GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLV  160 (342)
Q Consensus        85 ~w~~~~~~~~~-~-~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~  160 (342)
                      +||+.+++... . ..|...|.+++|+|++.+|++|+.|++|++||+++..... ..+.. .+...+.++.+  ++..++
T Consensus       153 ~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~-~~~~~-~h~~~v~~l~fs~~g~~l~  230 (343)
T 3lrv_A          153 FQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS-SRFPV-DEEAKIKEVKFADNGYWMV  230 (343)
T ss_dssp             EEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC-EECCC-CTTSCEEEEEECTTSSEEE
T ss_pred             EEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc-cEEec-cCCCCEEEEEEeCCCCEEE
Confidence            99999887532 2 3466689999999999999999999999999998654321 12222 13344555544  566888


Q ss_pred             EEEcCCeEEEEeCCCCCCcccccc---cccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEEec
Q 019384          161 VATAGRHVNVYDLRNMSQPEQRRE---SSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHRKS  236 (342)
Q Consensus       161 ~~s~d~~v~iwd~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~~~  236 (342)
                      +++ +++|++||+++.........   ........+++++|+++.+++++. ++.+.  +|+.....  +.+..      
T Consensus       231 s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~--v~~~~~~~--~~~~~------  299 (343)
T 3lrv_A          231 VEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLT--IYKFDKKT--KNWTK------  299 (343)
T ss_dssp             EEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEE--EEEECTTT--CSEEE------
T ss_pred             EEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEE--EEEEcccc--cceEe------
Confidence            888 55999999998654321111   001111146899999999999887 88765  57764322  22221      


Q ss_pred             CCCCceeeeeeEEEEcC---CCCeEEEecCCCeEEEEeCC
Q 019384          237 EAGRDIVYPVNAIAFHP---IYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       237 ~~~~~~~~~v~~v~~sp---~~~~l~sgs~Dg~I~iWd~~  273 (342)
                             .++..++|+|   +...+++++.||.++++-..
T Consensus       300 -------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          300 -------DEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             -------EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             -------cCceeEecCccccccceeEEEecCCceEEEEec
Confidence                   2577888998   88899999999999998544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.8e-25  Score=202.59  Aligned_cols=210  Identities=18%  Similarity=0.258  Sum_probs=158.1

Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc----CCeEEEEEcCCeEE
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV----GNRLVVATAGRHVN  169 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~----~~~~~~~s~d~~v~  169 (342)
                      ..+.+|...|.+++|+|++++|++|+.|++|++||++.........+.  .+...+.++.+.    ++.+++++.|+.|+
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec--CCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            356789999999999999999999999999999998643322212222  234456555553    67899999999999


Q ss_pred             EEeCCCCCCcccccccccceeeEEEEEeeC--CceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384          170 VYDLRNMSQPEQRRESSLKYQTRCVRCYPN--GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN  247 (342)
Q Consensus       170 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  247 (342)
                      +||+.+...............+.+++++|+  +..+++++.++.+.  +||...........+..|.         .+|.
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~--v~d~~~~~~~~~~~~~~~~---------~~v~  151 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS--VVEFKENGTTSPIIIDAHA---------IGVN  151 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE--EEECCTTSCCCEEEEECCT---------TCEE
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEE--EEecCCCCceeeEEecCCC---------CceE
Confidence            999987642122222234456889999999  89999999999765  5888654333333333332         2699


Q ss_pred             EEEEcC-------------CCCeEEEecCCCeEEEEeCCCce----eeeccCCCCcceEEEEECCC---CCEEEEEEecc
Q 019384          248 AIAFHP-------------IYGTFATGGCDGFVNVWDGNNKK----RLYQYSKYPTSIAALSFSRD---GRLLAVASSYT  307 (342)
Q Consensus       248 ~v~~sp-------------~~~~l~sgs~Dg~I~iWd~~~~~----~~~~~~~~~~~V~~v~~spd---g~~las~s~~~  307 (342)
                      +++|+|             ++.+|++|+.||+|++||++++.    .+..+.+|...|.+++|+||   +++|++++.++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg  231 (379)
T 3jrp_A          152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR  231 (379)
T ss_dssp             EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred             EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC
Confidence            999999             68999999999999999987543    45678899999999999999   89999998765


Q ss_pred             ccCCCCCCCCCcEEEEEccC
Q 019384          308 FEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~  327 (342)
                                 .|.+|++..
T Consensus       232 -----------~i~iwd~~~  240 (379)
T 3jrp_A          232 -----------TCIIWTQDN  240 (379)
T ss_dssp             -----------CEEEEEESS
T ss_pred             -----------EEEEEeCCC
Confidence                       366666653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=9.1e-25  Score=202.17  Aligned_cols=268  Identities=10%  Similarity=0.056  Sum_probs=190.7

Q ss_pred             CCeEEEEEcCCCC-eEEEEe----CCC----cEEEEEC--CCceee---eeeecCCceEEEEEeC---------------
Q 019384           20 DGISNLRFSNHSD-HLLVSS----WDK----SVRLYDA--SANVLR---GEFMHGGPVLDCCFHD---------------   70 (342)
Q Consensus        20 ~~V~~l~fs~~~~-~l~s~s----~Dg----ti~vwd~--~~~~~~---~~~~h~~~V~~~~~~~---------------   70 (342)
                      ..|....|++.+. .+++|+    .||    +++|||+  .+++.+   ...+|...+..+++.+               
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            4678888888875 555776    467    9999999  776543   2456777776666542               


Q ss_pred             CCCeEEEecC------CcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCC---cEEEEcCCCCCCcceeeee
Q 019384           71 DSSGFSASAD------HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDK---SLKCWDPRGASGQERTLVG  141 (342)
Q Consensus        71 ~~~~~s~s~D------~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~---~I~iWd~~~~~~~~~~~~~  141 (342)
                      +.+++.++.+      +.|++||++......+.+|...|.+++|+|+++.|++++.|+   .|++||++++..   ..+.
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~---~~l~  219 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---RQVA  219 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---EEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE---EEee
Confidence            4556655544      689999998766777888999999999999999999999885   999999976432   1232


Q ss_pred             ecCCCCcEEEEeccCCeEE-EEEcCC--eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-CCeEEEEEe
Q 019384          142 TYPQPERVYSLSLVGNRLV-VATAGR--HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFF  217 (342)
Q Consensus       142 ~~~~~~~v~~~s~~~~~~~-~~s~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~  217 (342)
                      .+........++++++.++ +++.++  .|.+||+.++...  . .........+++|+|+++.+++++. ++...+++|
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~--~-l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~  296 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR--Q-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV  296 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--E-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE--e-CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence            2222233445666677777 555555  4999999876421  1 1122345678899999998887775 566677888


Q ss_pred             echhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC---CeEEEEeCCCceeeeccCCCCcceEEEEEC
Q 019384          218 DLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD---GFVNVWDGNNKKRLYQYSKYPTSIAALSFS  294 (342)
Q Consensus       218 d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D---g~I~iWd~~~~~~~~~~~~~~~~V~~v~~s  294 (342)
                      |...... .  .+..|         ...+.+++|+|+|++|++++.+   ..|++||.++++. ..+..+. .+.+++|+
T Consensus       297 d~~~~~~-~--~l~~~---------~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~s  362 (415)
T 2hqs_A          297 NINGGAP-Q--RITWE---------GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLA  362 (415)
T ss_dssp             ETTSSCC-E--ECCCS---------SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEEC
T ss_pred             ECCCCCE-E--EEecC---------CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEc
Confidence            8754321 1  11111         1247789999999999888764   5899999998765 3455554 89999999


Q ss_pred             CCCCEEEEEEecc
Q 019384          295 RDGRLLAVASSYT  307 (342)
Q Consensus       295 pdg~~las~s~~~  307 (342)
                      |||++|+.++.+.
T Consensus       363 pdg~~l~~~s~~~  375 (415)
T 2hqs_A          363 PNGTMVIYSSSQG  375 (415)
T ss_dssp             TTSSEEEEEEEET
T ss_pred             CCCCEEEEEEcCC
Confidence            9999999888654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=6.1e-23  Score=190.04  Aligned_cols=271  Identities=11%  Similarity=0.072  Sum_probs=187.8

Q ss_pred             CCCCeEEEE---EcCCCCeEEEE--------------eCCCcEEEEECC--Cc--eeeeeeecCCceEEEEEeCCCCeE-
Q 019384           18 PSDGISNLR---FSNHSDHLLVS--------------SWDKSVRLYDAS--AN--VLRGEFMHGGPVLDCCFHDDSSGF-   75 (342)
Q Consensus        18 ~~~~V~~l~---fs~~~~~l~s~--------------s~Dgti~vwd~~--~~--~~~~~~~h~~~V~~~~~~~~~~~~-   75 (342)
                      ...+++.++   |+|+++.++..              +.|+.++||.+.  ++  .....+.....+.+++|++++.++ 
T Consensus        59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  138 (433)
T 3bws_A           59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAI  138 (433)
T ss_dssp             TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEE
T ss_pred             cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEE
Confidence            456788888   89887776543              334434555543  34  344444455667799998866665 


Q ss_pred             EEecCCcEEEEEeccCcee------ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcE
Q 019384           76 SASADHTVRRLVFSHGKED------ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERV  149 (342)
Q Consensus        76 s~s~D~~i~~w~~~~~~~~------~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v  149 (342)
                      +++.|+.|++||+.+++..      .+.+|...|.+++|++++..+++++.|++|++||+++...  ...+..+......
T Consensus       139 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~--~~~~~~~~~~~~~  216 (433)
T 3bws_A          139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY--KATVDLTGKWSKI  216 (433)
T ss_dssp             EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE--EEEEECSSSSEEE
T ss_pred             EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE--EEEEcCCCCCeeE
Confidence            5566788999999887643      2457889999999999999999999999999999875432  1222222222233


Q ss_pred             EEEeccCCeEEEE-EcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCC------eEEEEEeechhh
Q 019384          150 YSLSLVGNRLVVA-TAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEG------RVAMEFFDLSEA  222 (342)
Q Consensus       150 ~~~s~~~~~~~~~-s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~------~~~i~~~d~~~~  222 (342)
                      +.++.+++.++++ +.++.|++||+++++....   ......+.+++++|+++.+++++.+.      +-.+++||....
T Consensus       217 ~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~  293 (433)
T 3bws_A          217 LLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK---TDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE  293 (433)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEEE---CCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred             EEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE---ecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence            4455556666544 4789999999987633211   12233578899999999888877411      224567998644


Q ss_pred             hhcccceeeeEEecCCCCceeeeeeEEEEcCCCCe-EEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEE
Q 019384          223 SQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGT-FATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLA  301 (342)
Q Consensus       223 ~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~-l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~la  301 (342)
                      ....   ...|.         ..+.+++|+|+++. +++++.|++|++||.++++.+..+. +...+.+++|+|||++|+
T Consensus       294 ~~~~---~~~~~---------~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~  360 (433)
T 3bws_A          294 KLID---TIGPP---------GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLY  360 (433)
T ss_dssp             EEEE---EEEEE---------ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEE
T ss_pred             cEEe---eccCC---------CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEE
Confidence            2211   11222         24778999999975 5777999999999999888777665 667899999999999998


Q ss_pred             EEEec
Q 019384          302 VASSY  306 (342)
Q Consensus       302 s~s~~  306 (342)
                      +++..
T Consensus       361 ~~~~~  365 (433)
T 3bws_A          361 VSCRG  365 (433)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            88764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.92  E-value=2.5e-23  Score=193.26  Aligned_cols=209  Identities=17%  Similarity=0.235  Sum_probs=151.5

Q ss_pred             eeeeecCCceEEEEEeCC-C-CeEEEecCCcEEEEEeccC----------c-eeecccCCcceeEEEEeCCCC-EEEEee
Q 019384           54 RGEFMHGGPVLDCCFHDD-S-SGFSASADHTVRRLVFSHG----------K-EDILGKHDAPVRCIEYSYAAG-QVITGS  119 (342)
Q Consensus        54 ~~~~~h~~~V~~~~~~~~-~-~~~s~s~D~~i~~w~~~~~----------~-~~~~~~h~~~V~~~~~~~~~~-~l~sgs  119 (342)
                      .....|.+.|++++|+++ + .+++++.|+.|++|++...          . ...+.+|...|.+++|+|++. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445689999999999975 3 4568899999999999862          2 345678999999999999987 999999


Q ss_pred             CCCcEEEEcCCCCCCccee---eeeecCCCCcEEEEecc---CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEE
Q 019384          120 WDKSLKCWDPRGASGQERT---LVGTYPQPERVYSLSLV---GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRC  193 (342)
Q Consensus       120 ~D~~I~iWd~~~~~~~~~~---~~~~~~~~~~v~~~s~~---~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~  193 (342)
                      .||+|++||++........   ......+...+.++.+.   +..+++++.|+.|++||+++.....             
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~-------------  268 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK-------------  268 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS-------------
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc-------------
Confidence            9999999999753221110   01111233445555543   4577788888888888887642100             


Q ss_pred             EEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeC
Q 019384          194 VRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDG  272 (342)
Q Consensus       194 v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~  272 (342)
                                                      ....+..|.         .+|++++|+|++. +|++|+.||+|++||+
T Consensus       269 --------------------------------~~~~~~~~~---------~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~  307 (430)
T 2xyi_A          269 --------------------------------PSHTVDAHT---------AEVNCLSFNPYSEFILATGSADKTVALWDL  307 (430)
T ss_dssp             --------------------------------CSEEEECCS---------SCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred             --------------------------------ceeEeecCC---------CCeEEEEeCCCCCCEEEEEeCCCeEEEEeC
Confidence                                            000011121         1588999999987 6899999999999999


Q ss_pred             CC-ceeeeccCCCCcceEEEEECCCCC-EEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          273 NN-KKRLYQYSKYPTSIAALSFSRDGR-LLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       273 ~~-~~~~~~~~~~~~~V~~v~~spdg~-~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      ++ ...+..+..|...|.+++|+|+++ +|++++.++           .|.+|++..
T Consensus       308 ~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~-----------~i~iwd~~~  353 (430)
T 2xyi_A          308 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR-----------RLHVWDLSK  353 (430)
T ss_dssp             TCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS-----------CCEEEEGGG
T ss_pred             CCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC-----------cEEEEeCCC
Confidence            87 456778888999999999999996 577777654           366666653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=5.9e-23  Score=203.20  Aligned_cols=275  Identities=10%  Similarity=0.017  Sum_probs=195.5

Q ss_pred             CCCeEEEEEcCCCCeEEEEeC-CC-----cEEEEECCCceeeeeee-cC------------------------CceEEEE
Q 019384           19 SDGISNLRFSNHSDHLLVSSW-DK-----SVRLYDASANVLRGEFM-HG------------------------GPVLDCC   67 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~-Dg-----ti~vwd~~~~~~~~~~~-h~------------------------~~V~~~~   67 (342)
                      ...|.+++|||||++|++++. |+     +|++||+.+++...... +.                        ..|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            567999999999999999998 88     99999998876554443 22                        2378899


Q ss_pred             EeCCCCeEEEecCCcEEEEEeccC---ceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC
Q 019384           68 FHDDSSGFSASADHTVRRLVFSHG---KEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP  144 (342)
Q Consensus        68 ~~~~~~~~s~s~D~~i~~w~~~~~---~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~  144 (342)
                      |+|+++.+..+.++.|.+|++.++   ....+..|...+.+++|+|||++|+.++ ++.|.+||+.++..  ........
T Consensus       116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~--~~~~~~~~  192 (741)
T 2ecf_A          116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ--MQLTADGS  192 (741)
T ss_dssp             ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE--EECCCCCC
T ss_pred             ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE--EEeccCCc
Confidence            999888654444599999999988   6666778888999999999999999887 56999999875322  11111100


Q ss_pred             C----------------CCcEEEEeccCCeEEEEEcCC---------------------------------eEEEEeCCC
Q 019384          145 Q----------------PERVYSLSLVGNRLVVATAGR---------------------------------HVNVYDLRN  175 (342)
Q Consensus       145 ~----------------~~~v~~~s~~~~~~~~~s~d~---------------------------------~v~iwd~~~  175 (342)
                      .                ....+.++++++.|++++.|+                                 .|.+||+.+
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~  272 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE  272 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred             cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence            0                013356788888898887765                                 788899987


Q ss_pred             -CCCcccccccccceeeEEEEEeeCCceEEEEcc---CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEE
Q 019384          176 -MSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV---EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF  251 (342)
Q Consensus       176 -~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~---~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  251 (342)
                       ++.............+..++| |+|+.+++.+.   .....+++||..+....  ..+..+...     ....+..++|
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~-----~~~~~~~~~~  344 (741)
T 2ecf_A          273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR--VLAHETSPT-----WVPLHNSLRF  344 (741)
T ss_dssp             TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE--EEEEEECSS-----CCCCCSCCEE
T ss_pred             CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE--EEEEcCCCC-----cCCcCCceEE
Confidence             643211111123345678899 99998887653   34567888998653221  112222110     0012467899


Q ss_pred             cCCCCeEEEecCCCeEEEEeCC-CceeeeccCCCCcceEEE-EECCCCCEEEEEEe
Q 019384          252 HPIYGTFATGGCDGFVNVWDGN-NKKRLYQYSKYPTSIAAL-SFSRDGRLLAVASS  305 (342)
Q Consensus       252 sp~~~~l~sgs~Dg~I~iWd~~-~~~~~~~~~~~~~~V~~v-~~spdg~~las~s~  305 (342)
                      +|||+++++++.||+++||... +++ ...+..+...|.++ +|||||++|+..+.
T Consensus       345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~  399 (741)
T 2ecf_A          345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAG  399 (741)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEEC
T ss_pred             CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEe
Confidence            9999999999999988888765 344 77788888888887 59999998876665

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=1.2e-22  Score=188.02  Aligned_cols=249  Identities=10%  Similarity=0.004  Sum_probs=182.5

Q ss_pred             CCeEEEEeCC------CcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEecCC---cEEEEEeccCceeecccCC
Q 019384           31 SDHLLVSSWD------KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSASADH---TVRRLVFSHGKEDILGKHD  100 (342)
Q Consensus        31 ~~~l~s~s~D------gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~---~i~~w~~~~~~~~~~~~h~  100 (342)
                      +.+++.++.+      ++|++||+.++.......|.+.|.+++|+|+++ +++++.|+   .|++||+.+++...+..|.
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~  222 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP  222 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC
Confidence            6677776654      799999998777777778999999999998876 45777775   8999999988877778888


Q ss_pred             cceeEEEEeCCCCEEE-EeeCCCc--EEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC-C--eEEEEeCC
Q 019384          101 APVRCIEYSYAAGQVI-TGSWDKS--LKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG-R--HVNVYDLR  174 (342)
Q Consensus       101 ~~V~~~~~~~~~~~l~-sgs~D~~--I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d-~--~v~iwd~~  174 (342)
                      ..+.+++|+||++.|+ +++.|+.  |.+||++++..   ..+..+........++++++.+++++.+ +  .|.+||+.
T Consensus       223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~  299 (415)
T 2hqs_A          223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI---RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN  299 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE---EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence            8999999999999887 7777665  99999875432   2222222222334556667778877764 4  57778987


Q ss_pred             CCCCcccccccccceeeEEEEEeeCCceEEEEccC-CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcC
Q 019384          175 NMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE-GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP  253 (342)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~-~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  253 (342)
                      ++....  . ........+++++|+++.+++++.+ +...+++||......   ..+..|          ..+.+++|+|
T Consensus       300 ~~~~~~--l-~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---~~l~~~----------~~~~~~~~sp  363 (415)
T 2hqs_A          300 GGAPQR--I-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVLSST----------FLDETPSLAP  363 (415)
T ss_dssp             SSCCEE--C-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---EECCCS----------SSCEEEEECT
T ss_pred             CCCEEE--E-ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---EEecCC----------CCcCCeEEcC
Confidence            754221  1 1122356678999999998887654 456778899864322   112211          1478899999


Q ss_pred             CCCeEEEecCCC---eEEEEeCCCceeeeccCCCCcceEEEEECCCCCE
Q 019384          254 IYGTFATGGCDG---FVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRL  299 (342)
Q Consensus       254 ~~~~l~sgs~Dg---~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~  299 (342)
                      +|++|++++.|+   .|++||+. ++....+..|.+.|.+++|||.-.+
T Consensus       364 dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~~  411 (415)
T 2hqs_A          364 NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLHH  411 (415)
T ss_dssp             TSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCCC
T ss_pred             CCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccccc
Confidence            999999988877   89999987 4557788899999999999997543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=1.8e-23  Score=182.41  Aligned_cols=257  Identities=12%  Similarity=0.041  Sum_probs=178.8

Q ss_pred             EEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEecc-Ccee-ecccC-CcceeEEEEeCCC
Q 019384           36 VSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSH-GKED-ILGKH-DAPVRCIEYSYAA  112 (342)
Q Consensus        36 s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~-~~~~-~~~~h-~~~V~~~~~~~~~  112 (342)
                      +++.|++|++||+.+++......|.+.|.+++|++++..+..+.++.|.+|++.+ ++.. ....| ...|.+++|+|++
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg   96 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG   96 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred             CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence            5678999999999998888788899999999999988876666689999999988 6643 33444 4778999999999


Q ss_pred             CEEEEee--CCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEE-EEEcCCeEEEEeCCCCCCcccccccccce
Q 019384          113 GQVITGS--WDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLV-VATAGRHVNVYDLRNMSQPEQRRESSLKY  189 (342)
Q Consensus       113 ~~l~sgs--~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~-~~s~d~~v~iwd~~~~~~~~~~~~~~~~~  189 (342)
                      +.|++++  .++.++||.++...... ..+... .......++.+++.++ ++..++.+++|++........ .......
T Consensus        97 ~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~  173 (297)
T 2ojh_A           97 ALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET-RLTHGEG  173 (297)
T ss_dssp             SEEEEEECTTTSSCEEEEEETTCCCC-EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCSSS
T ss_pred             CEEEEEEeCCCCcceEEEEECCCCce-EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce-EcccCCC
Confidence            9999988  44566666553222221 112111 1122334555666666 678889999998643211111 1122234


Q ss_pred             eeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC----
Q 019384          190 QTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD----  264 (342)
Q Consensus       190 ~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D----  264 (342)
                      .+.++.++|+++.+++++ .++.+.++.++....   ....+..|         ...+..++|+|++++|++++.+    
T Consensus       174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~---~~~~~~~~---------~~~~~~~~~s~dg~~l~~~~~~~~~~  241 (297)
T 2ojh_A          174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS---SVERITDS---------AYGDWFPHPSPSGDKVVFVSYDADVF  241 (297)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---CEEECCCC---------SEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred             ccccceECCCCCEEEEEecCCCCccEEEECCCCC---CcEEEecC---------CcccCCeEECCCCCEEEEEEcCCCCC
Confidence            567889999999887665 477776655553221   11112222         1357889999999999888766    


Q ss_pred             -------CeEEEEeCCCcee--eeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          265 -------GFVNVWDGNNKKR--LYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       265 -------g~I~iWd~~~~~~--~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                             +.|++||.++++.  +..+.+|...+.+++|+|||++|++++.++
T Consensus       242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             cccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                   5799999987654  444557888899999999999999888754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=8.4e-22  Score=177.02  Aligned_cols=287  Identities=14%  Similarity=0.116  Sum_probs=199.5

Q ss_pred             CCCeEEEEEcCCCCeEEEEeC-------CCcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eE-EEecCCcEEEEEec
Q 019384           19 SDGISNLRFSNHSDHLLVSSW-------DKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GF-SASADHTVRRLVFS   89 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~-------Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~-s~s~D~~i~~w~~~   89 (342)
                      ..++..++|+|++++|++++.       +++|.+||..+++....+.....+.+++|++++. ++ +...++.+.+||..
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            467899999999999888774       5789999999888777666667788999998776 44 44557899999998


Q ss_pred             cCce-eecccCCc---------ceeEEEEeCCCCEEEEee--CCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC
Q 019384           90 HGKE-DILGKHDA---------PVRCIEYSYAAGQVITGS--WDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN  157 (342)
Q Consensus        90 ~~~~-~~~~~h~~---------~V~~~~~~~~~~~l~sgs--~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~  157 (342)
                      +++. ..+..+..         .+.+++|+|+++.++.++  .++.|.+||+++...  ...+...........++.+++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~s~dg~  197 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL--KTAIQNTGKMSTGLALDSEGK  197 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE--EEEECCCCTTCCCCEEETTTT
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce--EEEecCCCCccceEEECCCCC
Confidence            8774 23333221         278899999999877665  478999999875432  112221112123346777888


Q ss_pred             eEEEEEcCCeEEEEeCCCCCCccccccc--ccceeeEEEEEeeCCceEEEEccC-CeEEEEEeechhhhhcccceeeeEE
Q 019384          158 RLVVATAGRHVNVYDLRNMSQPEQRRES--SLKYQTRCVRCYPNGTGYALSSVE-GRVAMEFFDLSEASQAKKYAFKCHR  234 (342)
Q Consensus       158 ~~~~~s~d~~v~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~s~~-~~~~i~~~d~~~~~~~~~~~~~~h~  234 (342)
                      .++++..++.|.+||+.+++........  ........++++|+++.++++..+ +.  +.+||..........  ..  
T Consensus       198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~--v~~~d~~~~~~~~~~--~~--  271 (353)
T 3vgz_A          198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE--VLVVDTRNGNILAKV--AA--  271 (353)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE--EEEEETTTCCEEEEE--EC--
T ss_pred             EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE--EEEEECCCCcEEEEE--Ec--
Confidence            8999999999999999876432211110  112345678899999977766544 54  467988543222111  11  


Q ss_pred             ecCCCCceeeeeeEEEEcCCCCeE-EEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCC
Q 019384          235 KSEAGRDIVYPVNAIAFHPIYGTF-ATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDK  313 (342)
Q Consensus       235 ~~~~~~~~~~~v~~v~~sp~~~~l-~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~  313 (342)
                          +     ....++|+|+++++ ++...+++|.+||..+++.+..+... ..+.+++|+|||++|.++...+...+.+
T Consensus       272 ----~-----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~~~~~  341 (353)
T 3vgz_A          272 ----P-----ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQKSTKQQE  341 (353)
T ss_dssp             ----S-----SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECCCBTTBC
T ss_pred             ----C-----CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccccccccc
Confidence                0     12468999999955 55567999999999998887766543 4689999999999888888776555565


Q ss_pred             CCCCCcEEEE
Q 019384          314 PHEPDAIFVR  323 (342)
Q Consensus       314 ~~~~~~~~~~  323 (342)
                      ...++.|+..
T Consensus       342 ~~~~~~v~~i  351 (353)
T 3vgz_A          342 ATQPDDVIRI  351 (353)
T ss_dssp             CSSCEEEEEE
T ss_pred             ccCCCcEEEE
Confidence            5566655543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5.3e-24  Score=211.32  Aligned_cols=209  Identities=18%  Similarity=0.258  Sum_probs=157.0

Q ss_pred             ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--c--CCeEEEEEcCCeEEE
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--V--GNRLVVATAGRHVNV  170 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~--~~~~~~~s~d~~v~i  170 (342)
                      .+.+|.+.|++++|+|++++|++|+.||+|++||+.+........+.  .+...|.++.+  +  ++.+++++.|+.|++
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~--~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc--CCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            46789999999999999999999999999999998643332222222  23445655555  3  678999999999999


Q ss_pred             EeCCCCCCcccccccccceeeEEEEEeeC--CceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384          171 YDLRNMSQPEQRRESSLKYQTRCVRCYPN--GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA  248 (342)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  248 (342)
                      ||+.++..............+.+++++|+  +..+++++.++.+.  +||...........+..|.         .+|.+
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~--vwdl~~~~~~~~~~~~~~~---------~~v~~  150 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS--VVEFKENGTTSPIIIDAHA---------IGVNS  150 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE--EEECCSSSCCCCEEEECCS---------SCEEE
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEE--EEEeecCCCcceeEeecCC---------CceEE
Confidence            99987632122222234456889999999  89999999999765  5998654333333333333         26999


Q ss_pred             EEEcC-------------CCCeEEEecCCCeEEEEeCCCc----eeeeccCCCCcceEEEEECCC---CCEEEEEEeccc
Q 019384          249 IAFHP-------------IYGTFATGGCDGFVNVWDGNNK----KRLYQYSKYPTSIAALSFSRD---GRLLAVASSYTF  308 (342)
Q Consensus       249 v~~sp-------------~~~~l~sgs~Dg~I~iWd~~~~----~~~~~~~~~~~~V~~v~~spd---g~~las~s~~~~  308 (342)
                      ++|+|             ++.+|++|+.||+|++||.+++    ..+..+.+|...|.+++|+|+   |++|++++.++ 
T Consensus       151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg-  229 (753)
T 3jro_A          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-  229 (753)
T ss_dssp             EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS-
T ss_pred             EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC-
Confidence            99999             5899999999999999998765    556778899999999999999   89999998765 


Q ss_pred             cCCCCCCCCCcEEEEEccC
Q 019384          309 EEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~  327 (342)
                                .|.+|++..
T Consensus       230 ----------~I~iwd~~~  238 (753)
T 3jro_A          230 ----------TCIIWTQDN  238 (753)
T ss_dssp             ----------CEEEEEESS
T ss_pred             ----------EEEEecCCC
Confidence                      477777654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=3.9e-22  Score=190.52  Aligned_cols=290  Identities=12%  Similarity=0.044  Sum_probs=193.1

Q ss_pred             CeEEEEEcCCCCeEEEEeCCCcEEEEEC--CCceeeeeeecCCceEEEEEeC----CCCe-EEEe-cCCcEEEEEeccCc
Q 019384           21 GISNLRFSNHSDHLLVSSWDKSVRLYDA--SANVLRGEFMHGGPVLDCCFHD----DSSG-FSAS-ADHTVRRLVFSHGK   92 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~--~~~~~~~~~~h~~~V~~~~~~~----~~~~-~s~s-~D~~i~~w~~~~~~   92 (342)
                      .+..++|+|||++|++++.|++|++||+  .+++....+.+...+..++|++    +++. ++++ .+++|.+||..+.+
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence            3899999999999999999999999999  7777766666777889999998    7765 5666 48999999988876


Q ss_pred             ee-eccc----------C-CcceeEEEEeCCCCE-EEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeE
Q 019384           93 ED-ILGK----------H-DAPVRCIEYSYAAGQ-VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRL  159 (342)
Q Consensus        93 ~~-~~~~----------h-~~~V~~~~~~~~~~~-l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~  159 (342)
                      .. .+..          | ...+.++.+++++.. +++...+++|.+||..+........+. ......-..++.+++++
T Consensus       260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l  338 (543)
T 1nir_A          260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYF  338 (543)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEE
T ss_pred             cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEE
Confidence            32 2221          2 237899999997755 577888999999998754322111222 11122234677777766


Q ss_pred             EEE-EcCCeEEEEeCCCCCCccccccc--ccceeeEEEEEeeCC-ceEEEEc-cCCeEEEEEeechhhhh-----cccce
Q 019384          160 VVA-TAGRHVNVYDLRNMSQPEQRRES--SLKYQTRCVRCYPNG-TGYALSS-VEGRVAMEFFDLSEASQ-----AKKYA  229 (342)
Q Consensus       160 ~~~-s~d~~v~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~-~~~~~~s-~~~~~~i~~~d~~~~~~-----~~~~~  229 (342)
                      +++ ..+++|.+||+.+++........  ++......+ ++|++ ..++++. .++++  .+||......     .....
T Consensus       339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V--~v~d~~~~~~~~~~~~~v~~  415 (543)
T 1nir_A          339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSI--SLIGTDPKNHPQYAWKKVAE  415 (543)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEE--EEEECCTTTCTTTBTSEEEE
T ss_pred             EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceE--EEEEeCCCCCchhcCeEEEE
Confidence            655 45789999999987432211111  111111222 46774 4445544 45665  5688754211     11112


Q ss_pred             eeeEEecCCCCceeeeeeEEEEcCCCCeEEEec-------CCCeEEEEeCCCceee-ec--------cCCCCcceEEEEE
Q 019384          230 FKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGG-------CDGFVNVWDGNNKKRL-YQ--------YSKYPTSIAALSF  293 (342)
Q Consensus       230 ~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs-------~Dg~I~iWd~~~~~~~-~~--------~~~~~~~V~~v~~  293 (342)
                      +..|.         ..+..|+|||++++|++++       .+++|.|||+++++.. ..        +..+...+..++|
T Consensus       416 l~~~g---------~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  486 (543)
T 1nir_A          416 LQGQG---------GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY  486 (543)
T ss_dssp             EECSC---------SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEE
T ss_pred             EEcCC---------CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccC
Confidence            22221         1367799999999999987       3789999999987665 33        2466789999999


Q ss_pred             CCCCCEEEEEEeccccCCCCCCCCCcEEEEEccCCc
Q 019384          294 SRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIE  329 (342)
Q Consensus       294 spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~~  329 (342)
                      +|||++|.++....-+      ..+.|.||....+.
T Consensus       487 ~~~g~~~~~s~~~~~~------~~~~i~v~D~~t~~  516 (543)
T 1nir_A          487 NKRGDEVWFSVWNGKN------DSSALVVVDDKTLK  516 (543)
T ss_dssp             CSSSSEEEEEEECCTT------SCCEEEEEETTTTE
T ss_pred             CCCCCEEEEEeecCCC------CCCeEEEEECCCce
Confidence            9999998876432200      12358888766443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=2.6e-22  Score=197.62  Aligned_cols=269  Identities=12%  Similarity=-0.009  Sum_probs=182.2

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEecc-----Ccee
Q 019384           20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSH-----GKED   94 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~-----~~~~   94 (342)
                      ..|.+++|||| ++++.+ .|++|++||+.+++......+.+.+.+++|+|+++.+..+.|+.|.+|++.+     ++..
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~  159 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI  159 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE
Confidence            57999999999 666554 4699999999988877777788889999999998876667899999999988     6643


Q ss_pred             e-cccCCcc--------------eeEEEEeCCCCEEEEee---------------------------------CCCcEEE
Q 019384           95 I-LGKHDAP--------------VRCIEYSYAAGQVITGS---------------------------------WDKSLKC  126 (342)
Q Consensus        95 ~-~~~h~~~--------------V~~~~~~~~~~~l~sgs---------------------------------~D~~I~i  126 (342)
                      . ...+...              +.+++|+||+++|++++                                 .+..|.+
T Consensus       160 ~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~  239 (706)
T 2z3z_A          160 AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI  239 (706)
T ss_dssp             ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred             EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence            3 2333332              58999999999999887                                 4467999


Q ss_pred             EcCCCCCCcceeeeeecCCCCcE--EEEeccCCeEEEEEcCC-----eEEEEeCCCCCCcccccccccce---eeEEEEE
Q 019384          127 WDPRGASGQERTLVGTYPQPERV--YSLSLVGNRLVVATAGR-----HVNVYDLRNMSQPEQRRESSLKY---QTRCVRC  196 (342)
Q Consensus       127 Wd~~~~~~~~~~~~~~~~~~~~v--~~~s~~~~~~~~~s~d~-----~v~iwd~~~~~~~~~~~~~~~~~---~~~~v~~  196 (342)
                      ||++++..  ........+...+  +.++.+++.+++++.++     +|.+||+.+++............   ....+.+
T Consensus       240 ~d~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~  317 (706)
T 2z3z_A          240 YHLATGKT--VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF  317 (706)
T ss_dssp             EETTTTEE--EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred             EECCCCce--EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence            99875432  1111111122233  45566677888888776     89999998762221111100010   1245789


Q ss_pred             ee--CCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE-EEEcCCCCeEEE-ecCCC----eEE
Q 019384          197 YP--NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA-IAFHPIYGTFAT-GGCDG----FVN  268 (342)
Q Consensus       197 ~~--~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~-v~~sp~~~~l~s-gs~Dg----~I~  268 (342)
                      +|  +++.+++++.++.+.++.++.... .  ...+..|         ...+.. ++|+|+++.|+. ++.++    .|+
T Consensus       318 sp~~dg~~l~~~~~~g~~~l~~~~~~~~-~--~~~l~~~---------~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~  385 (706)
T 2z3z_A          318 LPGSNNQFIWQSRRDGWNHLYLYDTTGR-L--IRQVTKG---------EWEVTNFAGFDPKGTRLYFESTEASPLERHFY  385 (706)
T ss_dssp             CTTCSSEEEEEECTTSSCEEEEEETTSC-E--EEECCCS---------SSCEEEEEEECTTSSEEEEEESSSCTTCBEEE
T ss_pred             ecCCCCEEEEEEccCCccEEEEEECCCC-E--EEecCCC---------CeEEEeeeEEcCCCCEEEEEecCCCCceEEEE
Confidence            99  999888888888877766663211 1  1112211         113555 799999987755 44554    677


Q ss_pred             EEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          269 VWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       269 iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      .||..+++ +..+. +...+.+++|||||++|+..++.
T Consensus       386 ~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~  421 (706)
T 2z3z_A          386 CIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQS  421 (706)
T ss_dssp             EEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEEC
T ss_pred             EEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecC
Confidence            77777654 33343 56679999999999998877653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=2.7e-22  Score=198.51  Aligned_cols=267  Identities=15%  Similarity=0.093  Sum_probs=186.1

Q ss_pred             CeEEEEEcCCCCeEEEEeCCCcEEEEECCCc---eeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeec-
Q 019384           21 GISNLRFSNHSDHLLVSSWDKSVRLYDASAN---VLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDIL-   96 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~---~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~-   96 (342)
                      .|.+++|||||++|++++. ++|++||+.++   .......|.+.+..++|+|+++.+..+.++.|.+|++.+++...+ 
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECC
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEec
Confidence            4889999999999999887 99999999887   666666788899999999999876555678999999988765433 


Q ss_pred             ccCCcc----------------eeEEEEeCCCCEEEEeeCCC---------------------------------cEEEE
Q 019384           97 GKHDAP----------------VRCIEYSYAAGQVITGSWDK---------------------------------SLKCW  127 (342)
Q Consensus        97 ~~h~~~----------------V~~~~~~~~~~~l~sgs~D~---------------------------------~I~iW  127 (342)
                      ..+...                +.+++|+||++.|++++.|+                                 .|.+|
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            233322                47899999999999988776                                 78899


Q ss_pred             cCCC-CCCcceeeeeecCCCC--cEEEEeccCCeEEEEEc-----CCeEEEEeCCCCCCcccccccccce---eeEEEEE
Q 019384          128 DPRG-ASGQERTLVGTYPQPE--RVYSLSLVGNRLVVATA-----GRHVNVYDLRNMSQPEQRRESSLKY---QTRCVRC  196 (342)
Q Consensus       128 d~~~-~~~~~~~~~~~~~~~~--~v~~~s~~~~~~~~~s~-----d~~v~iwd~~~~~~~~~~~~~~~~~---~~~~v~~  196 (342)
                      |+.+ +...  .......+..  ....+ .+++.+++++.     +.+|.+||+.+++....... ....   .+..++|
T Consensus       269 d~~~~~~~~--~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~  344 (741)
T 2ecf_A          269 SPAEQAQTQ--WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE-TSPTWVPLHNSLRF  344 (741)
T ss_dssp             CSSTTCCCE--EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE-ECSSCCCCCSCCEE
T ss_pred             ECCCCCceE--EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc-CCCCcCCcCCceEE
Confidence            9875 4321  1111101122  23456 77778877654     45799999987643221111 1111   2246789


Q ss_pred             eeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEE-EEcCCCCeE-EEecCCC--eEEEEeC
Q 019384          197 YPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI-AFHPIYGTF-ATGGCDG--FVNVWDG  272 (342)
Q Consensus       197 ~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v-~~sp~~~~l-~sgs~Dg--~I~iWd~  272 (342)
                      +|+++.+++++.++...++.+|....    ...+..|.         ..|..+ +|+|+++.| ++++.|+  +++||++
T Consensus       345 spdg~~~~~~~~~g~~~l~~~~~~~~----~~~l~~~~---------~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~  411 (741)
T 2ecf_A          345 LDDGSILWSSERTGFQHLYRIDSKGK----AAALTHGN---------WSVDELLAVDEKAGLAYFRAGIESARESQIYAV  411 (741)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECSSSC----EEESCCSS---------SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred             CCCCeEEEEecCCCccEEEEEcCCCC----eeeeeecc---------eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence            99999888888888888877775321    11222221         136666 699999876 4566666  8999987


Q ss_pred             CC-ceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          273 NN-KKRLYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       273 ~~-~~~~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      .. +.....+.. ...+.+++|||||++|+...+.
T Consensus       412 ~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~  445 (741)
T 2ecf_A          412 PLQGGQPQRLSK-APGMHSASFARNASVYVDSWSN  445 (741)
T ss_dssp             ETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEE
T ss_pred             EcCCCCeeeccc-CCCceEEEECCCCCEEEEEecC
Confidence            63 444556655 5668999999999998877653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=6e-22  Score=194.97  Aligned_cols=274  Identities=12%  Similarity=0.091  Sum_probs=187.5

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee--eeeeecC-----------------CceEEEEEeCCCCeEEEec
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL--RGEFMHG-----------------GPVLDCCFHDDSSGFSASA   79 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~--~~~~~h~-----------------~~V~~~~~~~~~~~~s~s~   79 (342)
                      ...+..++|+  ++.+++++.|+ | +||+.+++.  .....|.                 ..|.+++|+++ ..+..+.
T Consensus        25 ~~~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~   99 (706)
T 2z3z_A           25 PEYVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT   99 (706)
T ss_dssp             ---CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE
T ss_pred             cccCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE
Confidence            4567788998  77888888888 8 999988776  5555543                 56999999988 5555557


Q ss_pred             CCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCC-----CCCcceeeeeecCCC--------
Q 019384           80 DHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG-----ASGQERTLVGTYPQP--------  146 (342)
Q Consensus        80 D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~-----~~~~~~~~~~~~~~~--------  146 (342)
                      |+.+++||+.+++...+..+...+.+++|+||++.|+.+ .|+.|++||+.+     +..  ..........        
T Consensus       100 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~--~~~~~~~~~~~~~g~~~~  176 (706)
T 2z3z_A          100 QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA--IAVTIDGTETLVYGQAVH  176 (706)
T ss_dssp             TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC--EESCSCCBTTEEESSCCG
T ss_pred             CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc--EEeccCCCCCeEcccchh
Confidence            799999999888766666777789999999999999885 689999999875     332  1111111110        


Q ss_pred             ------CcEEEEeccCCeEEEEE---------------------------------cCCeEEEEeCCCCCCccccccccc
Q 019384          147 ------ERVYSLSLVGNRLVVAT---------------------------------AGRHVNVYDLRNMSQPEQRRESSL  187 (342)
Q Consensus       147 ------~~v~~~s~~~~~~~~~s---------------------------------~d~~v~iwd~~~~~~~~~~~~~~~  187 (342)
                            .....++++++.|++++                                 .+..|.+||+.++...........
T Consensus       177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~  256 (706)
T 2z3z_A          177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK  256 (706)
T ss_dssp             GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred             hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence                  13456788888888887                                 335799999987542211111122


Q ss_pred             ceeeEEEEEeeCCceEEEEccCC---eEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcC--CCCeEEEec
Q 019384          188 KYQTRCVRCYPNGTGYALSSVEG---RVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP--IYGTFATGG  262 (342)
Q Consensus       188 ~~~~~~v~~~~~~~~~~~~s~~~---~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp--~~~~l~sgs  262 (342)
                      ...+..++|+|+++.+++++.+.   ...+++||..+......  +..+...    .....+..++|+|  +|++|++++
T Consensus       257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~--~~~~~~~----~~~~~~~~~~~sp~~dg~~l~~~~  330 (706)
T 2z3z_A          257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRT--LFVETDK----HYVEPLHPLTFLPGSNNQFIWQSR  330 (706)
T ss_dssp             TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEE--EEEEECS----SCCCCCSCCEECTTCSSEEEEEEC
T ss_pred             ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeE--EEEccCC----CeECccCCceeecCCCCEEEEEEc
Confidence            34567899999999888876543   35678899864311111  1111110    0011246789999  999999999


Q ss_pred             CCCeEEEEeCC-CceeeeccCCCCcceEE-EEECCCCCEEEEEEec
Q 019384          263 CDGFVNVWDGN-NKKRLYQYSKYPTSIAA-LSFSRDGRLLAVASSY  306 (342)
Q Consensus       263 ~Dg~I~iWd~~-~~~~~~~~~~~~~~V~~-v~~spdg~~las~s~~  306 (342)
                      .|++++||+.+ +++.+..+..+...+.+ ++|+|||+.|+.++..
T Consensus       331 ~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          331 RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred             cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence            99999999876 56667777888777877 8999999988877754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=4.9e-21  Score=171.07  Aligned_cols=267  Identities=10%  Similarity=0.041  Sum_probs=169.4

Q ss_pred             CeEEEEeCCCcEEEEECC-Cc--eeeeeeecCCceEEEEEeCCCC-eEEEecC-CcEEEEEec--cCcee---ecccCCc
Q 019384           32 DHLLVSSWDKSVRLYDAS-AN--VLRGEFMHGGPVLDCCFHDDSS-GFSASAD-HTVRRLVFS--HGKED---ILGKHDA  101 (342)
Q Consensus        32 ~~l~s~s~Dgti~vwd~~-~~--~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D-~~i~~w~~~--~~~~~---~~~~h~~  101 (342)
                      ..+++++.|++|++||+. ++  .......|...+.+++|++++. +++++.+ +.+++|++.  ++...   .+..+. 
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-   84 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-   84 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence            345555889999999985 33  3444567888899999998876 5666665 899999997  44432   223333 


Q ss_pred             ceeEEEEeCCCCEEEEee-CCCcEEEEcCCCCCCcceeeeeecCC--CCcEEEEeccCCeEEEEE-cCCeEEEEeCCC-C
Q 019384          102 PVRCIEYSYAAGQVITGS-WDKSLKCWDPRGASGQERTLVGTYPQ--PERVYSLSLVGNRLVVAT-AGRHVNVYDLRN-M  176 (342)
Q Consensus       102 ~V~~~~~~~~~~~l~sgs-~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~v~~~s~~~~~~~~~s-~d~~v~iwd~~~-~  176 (342)
                      .+.+++|+|+++.|++++ .++.|.+||++.+.  ..........  ....+.++.+++.+++++ .++.|.+||+.+ +
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~  162 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL--PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  162 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE--EEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc--cccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence            789999999999876655 48899999984211  1111221111  122345666677777776 889999999986 3


Q ss_pred             CCccc---ccccccceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384          177 SQPEQ---RRESSLKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH  252 (342)
Q Consensus       177 ~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  252 (342)
                      .....   .........+..++++|+++.+++++ .++.+  .+|+.......... +........+......+..++|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i--~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~i~~s  239 (343)
T 1ri6_A          163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSV--DVWELKDPHGNIEC-VQTLDMMPENFSDTRWAADIHIT  239 (343)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEE--EEEESSCTTSCCEE-EEEEECSCTTCCSCCCEEEEEEC
T ss_pred             ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEE--EEEEecCCCCcEEE-EeeccccCccccccCCccceEEC
Confidence            22110   11112223466789999999775554 66655  55777432111110 11111011110111235679999


Q ss_pred             CCCCeEE-EecCCCeEEEEeCC--C--ceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          253 PIYGTFA-TGGCDGFVNVWDGN--N--KKRLYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       253 p~~~~l~-sgs~Dg~I~iWd~~--~--~~~~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                      |++++|+ ++..|+.|++||+.  +  .+.+..+..+.. +.+++|+|||++|++++.
T Consensus       240 ~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~  296 (343)
T 1ri6_A          240 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQ  296 (343)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECT
T ss_pred             CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecC
Confidence            9998776 66689999999987  2  344444544444 889999999999988874

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=1.2e-21  Score=187.21  Aligned_cols=265  Identities=11%  Similarity=0.042  Sum_probs=181.8

Q ss_pred             EcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEe--ccCceeecccCCcce
Q 019384           27 FSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVF--SHGKEDILGKHDAPV  103 (342)
Q Consensus        27 fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~--~~~~~~~~~~h~~~V  103 (342)
                      |+|++..+++++.|++|++||..++++...+.....+..++|+++++ +++++.|++|++||+  .+.+......+...+
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p  224 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA  224 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEE
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCc
Confidence            78999999999999999999999888776665333488999998775 568999999999999  665533222245668


Q ss_pred             eEEEEeC----CCCEEEEee-CCCcEEEEcCCCCCCcceeeeeec---------CCCCcEEEE--eccCC-eEEEEEcCC
Q 019384          104 RCIEYSY----AAGQVITGS-WDKSLKCWDPRGASGQERTLVGTY---------PQPERVYSL--SLVGN-RLVVATAGR  166 (342)
Q Consensus       104 ~~~~~~~----~~~~l~sgs-~D~~I~iWd~~~~~~~~~~~~~~~---------~~~~~v~~~--s~~~~-~~~~~s~d~  166 (342)
                      ..++|+|    +++++++++ .+++|.+||..+....  ..+...         .....+..+  +.++. .+++...++
T Consensus       225 ~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~--~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g  302 (543)
T 1nir_A          225 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK--QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  302 (543)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE--EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             ceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccc--eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence            9999999    999998887 5899999998754321  222110         011134444  44334 456667788


Q ss_pred             eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384          167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP  245 (342)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~  245 (342)
                      +|.+||+.+........ .........+.++|+++++++++ .++++  .+||..+.+....  +..     ....|.+.
T Consensus       303 ~i~vvd~~~~~~l~~~~-i~~~~~~~~~~~spdg~~l~va~~~~~~v--~v~D~~tg~l~~~--i~~-----g~~ph~g~  372 (543)
T 1nir_A          303 KVLLVNYKDIDNLTVTS-IGAAPFLHDGGWDSSHRYFMTAANNSNKV--AVIDSKDRRLSAL--VDV-----GKTPHPGR  372 (543)
T ss_dssp             EEEEEECTTSSSCEEEE-EECCSSCCCEEECTTSCEEEEEEGGGTEE--EEEETTTTEEEEE--EEC-----SSSBCCTT
T ss_pred             eEEEEEecCCCcceeEE-eccCcCccCceECCCCCEEEEEecCCCeE--EEEECCCCeEEEe--ecc-----CCCCCCCC
Confidence            99999998754322111 11122345678999999876554 56665  4599865432211  111     00111111


Q ss_pred             eeEEEEcCC-CCeEEEec-CCCeEEEEeCCC-------ceeeeccCCCCcceEEEEECCCCCEEEEEE
Q 019384          246 VNAIAFHPI-YGTFATGG-CDGFVNVWDGNN-------KKRLYQYSKYPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       246 v~~v~~sp~-~~~l~sgs-~Dg~I~iWd~~~-------~~~~~~~~~~~~~V~~v~~spdg~~las~s  304 (342)
                      ...+ ++|+ +..++++. .|++|.|||..+       .+.++++.+|...+..++|+|||++|.+++
T Consensus       373 g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          373 GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred             Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence            1122 4787 66677775 689999999988       788899999988899999999999999876

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.89  E-value=2.4e-21  Score=186.64  Aligned_cols=261  Identities=14%  Similarity=0.059  Sum_probs=179.8

Q ss_pred             CCCeEEEEEcCCCCeEEEEeC-CCcEEEEECCCceeeeeeecC-CceEEEEEeCCCCeEEEec---CCcEEEEEecc--C
Q 019384           19 SDGISNLRFSNHSDHLLVSSW-DKSVRLYDASANVLRGEFMHG-GPVLDCCFHDDSSGFSASA---DHTVRRLVFSH--G   91 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~-Dgti~vwd~~~~~~~~~~~h~-~~V~~~~~~~~~~~~s~s~---D~~i~~w~~~~--~   91 (342)
                      ...|++++|+|||++||+++. ||+++||++.++..+....|. ..+..+.|+|+..+++++.   +...++|.+..  .
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~  100 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRP  100 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTST
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCC
Confidence            346999999999999999887 999999999877766665565 6899999998833345543   45567776654  2


Q ss_pred             -ceeecccCCcceeEEEEeCCCCE-EEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC----
Q 019384           92 -KEDILGKHDAPVRCIEYSYAAGQ-VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG----  165 (342)
Q Consensus        92 -~~~~~~~h~~~V~~~~~~~~~~~-l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d----  165 (342)
                       ....+..+ ..+...+|+|+++. +++++.++.+.+||++++..  .. +.....  ....++++++.+++++.+    
T Consensus       101 g~~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~--~~-l~~~~~--~~~~~spDG~~la~~~~~~~~~  174 (582)
T 3o4h_A          101 GEEQRLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL--RE-LARLPG--FGFVSDIRGDLIAGLGFFGGGR  174 (582)
T ss_dssp             TCCEECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE--EE-EEEESS--CEEEEEEETTEEEEEEEEETTE
T ss_pred             CccccccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE--EE-eecCCC--ceEEECCCCCEEEEEEEcCCCC
Confidence             22222222 23446688888753 34444444455999875422  22 222222  456788899999988777    


Q ss_pred             CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384          166 RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP  245 (342)
Q Consensus       166 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~  245 (342)
                      ..|.+||+.+++...  . .........++|+|||+.++.+..++...|++||.......   .+..|..         .
T Consensus       175 ~~i~~~d~~~g~~~~--l-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~---------~  239 (582)
T 3o4h_A          175 VSLFTSNLSSGGLRV--F-DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE---DLELPSK---------D  239 (582)
T ss_dssp             EEEEEEETTTCCCEE--E-CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE---ECCCSCS---------H
T ss_pred             eEEEEEcCCCCCceE--e-ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE---EccCCCc---------C
Confidence            679999998764321  1 22234567889999999999777777667888998643221   2222221         2


Q ss_pred             eeEEE--------EcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          246 VNAIA--------FHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       246 v~~v~--------~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      +..++        |+|||..+++++.|++++||++  ++.+..   ....|.+++|| ||+++++++++
T Consensus       240 ~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~~~v~~~~~s-dg~~l~~~s~~  302 (582)
T 3o4h_A          240 FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQGNHGRVVLW-RGKLVTSHTSL  302 (582)
T ss_dssp             HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CSSEEEEEEEE-TTEEEEEEEET
T ss_pred             hhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CCCceEEEEec-CCEEEEEEcCC
Confidence            34444        9999988899999999999999  665542   34678999999 99999888764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.89  E-value=5.5e-21  Score=170.30  Aligned_cols=265  Identities=11%  Similarity=0.080  Sum_probs=176.0

Q ss_pred             CeEEEEeCCCcEEEEECCCceeeeeeecCC---ceEEEEEeCCCC-eE-EEecCCcEEEEEeccCcee-ecc-c----CC
Q 019384           32 DHLLVSSWDKSVRLYDASANVLRGEFMHGG---PVLDCCFHDDSS-GF-SASADHTVRRLVFSHGKED-ILG-K----HD  100 (342)
Q Consensus        32 ~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~---~V~~~~~~~~~~-~~-s~s~D~~i~~w~~~~~~~~-~~~-~----h~  100 (342)
                      ++|++++.|++|++||..+++....+...+   .+..++|++++. ++ +++.++.|.+||+.+++.. .+. +    |.
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            478999999999999999887776665555   688999998875 43 5556789999999887643 222 2    23


Q ss_pred             cceeEEEEeCCCCEEEEee------------CCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeE
Q 019384          101 APVRCIEYSYAAGQVITGS------------WDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHV  168 (342)
Q Consensus       101 ~~V~~~~~~~~~~~l~sgs------------~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v  168 (342)
                      ..+.+++|+|+++.|++++            .++.|.+||+.+...  ...+.. ........++.+++.++++  ++.|
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i  156 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR--RKAFEA-PRQITMLAWARDGSKLYGL--GRDL  156 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE--EEEEEC-CSSCCCEEECTTSSCEEEE--SSSE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE--EEEEeC-CCCcceeEECCCCCEEEEe--CCeE
Confidence            3678899999999888875            579999999875322  112221 1122234577777777766  6889


Q ss_pred             EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCe-E---------------------EEEEeechhhhhcc
Q 019384          169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR-V---------------------AMEFFDLSEASQAK  226 (342)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~---------------------~i~~~d~~~~~~~~  226 (342)
                      .+||+.+++..........   ...+.++|++..+++....+. +                     .+++||....... 
T Consensus       157 ~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-  232 (337)
T 1pby_B          157 HVMDPEAGTLVEDKPIQSW---EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-  232 (337)
T ss_dssp             EEEETTTTEEEEEECSTTT---TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-
T ss_pred             EEEECCCCcEeeeeecccc---CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-
Confidence            9999987643211110000   012256788776655443322 2                     4567887543221 


Q ss_pred             cceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          227 KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       227 ~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      ...+..+.         ..+.+++|+|++++|+++  ++.|++||..+++.+..+... ..+.+++|+|||++|++++.+
T Consensus       233 ~~~~~~~~---------~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~  300 (337)
T 1pby_B          233 MREVRIMD---------VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGAL  300 (337)
T ss_dssp             EEEEEECS---------SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBS
T ss_pred             EeecCCCC---------CceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCC
Confidence            11111111         136689999999999888  799999999998877665533 457899999999998887432


Q ss_pred             cccCCCCCCCCCcEEEEEccCC
Q 019384          307 TFEEGDKPHEPDAIFVRSVNEI  328 (342)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~  328 (342)
                      .           .|.+|+++..
T Consensus       301 ~-----------~i~v~d~~~~  311 (337)
T 1pby_B          301 G-----------DLAAYDAETL  311 (337)
T ss_dssp             S-----------EEEEEETTTC
T ss_pred             C-----------cEEEEECcCC
Confidence            2           4777776543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=3e-20  Score=165.72  Aligned_cols=277  Identities=9%  Similarity=0.070  Sum_probs=175.7

Q ss_pred             EEEcCCCCe-EEEEeCCCcEEEEECCCceeeeee-ecCCceEEEEEeCCCC-eEEEec-CCcEEEEEeccCce--eeccc
Q 019384           25 LRFSNHSDH-LLVSSWDKSVRLYDASANVLRGEF-MHGGPVLDCCFHDDSS-GFSASA-DHTVRRLVFSHGKE--DILGK   98 (342)
Q Consensus        25 l~fs~~~~~-l~s~s~Dgti~vwd~~~~~~~~~~-~h~~~V~~~~~~~~~~-~~s~s~-D~~i~~w~~~~~~~--~~~~~   98 (342)
                      ..|++++++ +++++.+++|++||..++++.... .+...+ .++|++++. ++.++. ++.|.+||..+++.  ..+..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            456776665 678889999999999887765443 345556 999998876 555554 88999999988774  34455


Q ss_pred             CCcceeEEEEeCCCCEEEEeeCCC---cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEE-EcCCe-EEEEeC
Q 019384           99 HDAPVRCIEYSYAAGQVITGSWDK---SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVA-TAGRH-VNVYDL  173 (342)
Q Consensus        99 h~~~V~~~~~~~~~~~l~sgs~D~---~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~-s~d~~-v~iwd~  173 (342)
                      +..+..+++|+|++++|+++..++   .|.+||+++...  ...+.. ........++++++.++++ ..++. |.+|++
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~--~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~  158 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF--ISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKI  158 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE--EEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe--EEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence            656666699999999998665553   899999875432  111211 1112334556666655555 45577 999998


Q ss_pred             CCCCCcccc--cccccceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcc-cceeeeEEecCCCCceeeeeeEE
Q 019384          174 RNMSQPEQR--RESSLKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAK-KYAFKCHRKSEAGRDIVYPVNAI  249 (342)
Q Consensus       174 ~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~-~~~~~~h~~~~~~~~~~~~v~~v  249 (342)
                      .........  ...........++++|+++.++++. .++.+  .+||........ ...+..+          ..+..+
T Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v--~v~d~~~~~~~~~~~~~~~~----------~~~~~~  226 (331)
T 3u4y_A          159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSI--GILETQNPENITLLNAVGTN----------NLPGTI  226 (331)
T ss_dssp             CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEE--EEEECSSTTSCEEEEEEECS----------SCCCCE
T ss_pred             CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeE--EEEECCCCcccceeeeccCC----------CCCceE
Confidence            753221110  1111223467889999998665554 56654  568875433200 1111111          146789


Q ss_pred             EEcCCCCeEEE-ecCCCeEEEEeCCCcee--eeccCC----CCcc---eEEEEECCCCCEEEEEEeccccCCCCCCCCCc
Q 019384          250 AFHPIYGTFAT-GGCDGFVNVWDGNNKKR--LYQYSK----YPTS---IAALSFSRDGRLLAVASSYTFEEGDKPHEPDA  319 (342)
Q Consensus       250 ~~sp~~~~l~s-gs~Dg~I~iWd~~~~~~--~~~~~~----~~~~---V~~v~~spdg~~las~s~~~~~~~~~~~~~~~  319 (342)
                      +|+|+|++|+. ...++.|.+||.++++.  +..+..    +...   ...++|+|||++|++++..+          ..
T Consensus       227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~----------~~  296 (331)
T 3u4y_A          227 VVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS----------RE  296 (331)
T ss_dssp             EECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT----------TE
T ss_pred             EECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC----------Cc
Confidence            99999997655 45688999999998776  332221    2222   25699999999988776543          14


Q ss_pred             EEEEEccC
Q 019384          320 IFVRSVNE  327 (342)
Q Consensus       320 ~~~~~~~~  327 (342)
                      |.+|+++.
T Consensus       297 v~v~d~~~  304 (331)
T 3u4y_A          297 LKVFTISG  304 (331)
T ss_dssp             EEEEETTS
T ss_pred             EEEEEecC
Confidence            77787764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=3e-21  Score=190.33  Aligned_cols=274  Identities=12%  Similarity=0.048  Sum_probs=181.4

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee-cCC---ceEEEEEeCCCCe-EEEecC---------CcEE
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGG---PVLDCCFHDDSSG-FSASAD---------HTVR   84 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~-h~~---~V~~~~~~~~~~~-~s~s~D---------~~i~   84 (342)
                      ...+.+++|+|||+++++ +.||+|++||+.+++...... |..   .|.+++|+|+++. ++++.+         +.+.
T Consensus        16 ~~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~   94 (723)
T 1xfd_A           16 KIHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV   94 (723)
T ss_dssp             CCCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred             cccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence            345789999999998776 789999999998876655544 333   4899999988875 566554         6778


Q ss_pred             EEEeccCceeec---ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCC---------------
Q 019384           85 RLVFSHGKEDIL---GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQP---------------  146 (342)
Q Consensus        85 ~w~~~~~~~~~~---~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~---------------  146 (342)
                      +|++.+++...+   .+|...+.+++|+|||+.|+.++. +.|++||+.++..  ..........               
T Consensus        95 ~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~--~~~~~~~~~~~~~~g~~~~v~~ee~  171 (723)
T 1xfd_A           95 LSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA--IRVVSTGKEGVIYNGLSDWLYEEEI  171 (723)
T ss_dssp             EEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC--EEEECCCBTTTEEEEECCHHHHHTT
T ss_pred             EEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce--EEEecCCCCCceECcccceeEEEEe
Confidence            999988775433   345566899999999999998876 7999999875432  1111111111               


Q ss_pred             ---CcEEEEeccCCeEEEEEcCC----------------------------------eEEEEeCCCCCCccccccc----
Q 019384          147 ---ERVYSLSLVGNRLVVATAGR----------------------------------HVNVYDLRNMSQPEQRRES----  185 (342)
Q Consensus       147 ---~~v~~~s~~~~~~~~~s~d~----------------------------------~v~iwd~~~~~~~~~~~~~----  185 (342)
                         ...+.++++++.|++++.++                                  +|++||+.+..........    
T Consensus       172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~  251 (723)
T 1xfd_A          172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR  251 (723)
T ss_dssp             SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred             ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence               13456777888888887653                                  7999999876432111110    


Q ss_pred             ccceeeEEEEEeeCCceEEEEcc--CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee----eEEEEcCCCCeEE
Q 019384          186 SLKYQTRCVRCYPNGTGYALSSV--EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV----NAIAFHPIYGTFA  259 (342)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~~s~--~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v----~~v~~sp~~~~l~  259 (342)
                      .....+..++|+|+|+.++..+.  +....+++||..+.....  .+..+...        .+    ..++|+|||+.|+
T Consensus       252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~--~~~~~~~~--------~~~~~~~~~~~spdg~~l~  321 (723)
T 1xfd_A          252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK--KHEDESEA--------WLHRQNEEPVFSKDGRKFF  321 (723)
T ss_dssp             GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE--EEEEECSS--------CCCCCCCCCEECTTSCSEE
T ss_pred             CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE--EEEeccCC--------EEeccCCCceEcCCCCeEE
Confidence            01345678999999997766543  345677889985432211  11111110        12    3679999999776


Q ss_pred             E--ecCCC------eEEEEe-CCCce--eeeccCCCCcceEE-EEECCCCCEEEEEEec
Q 019384          260 T--GGCDG------FVNVWD-GNNKK--RLYQYSKYPTSIAA-LSFSRDGRLLAVASSY  306 (342)
Q Consensus       260 s--gs~Dg------~I~iWd-~~~~~--~~~~~~~~~~~V~~-v~~spdg~~las~s~~  306 (342)
                      .  +..|+      .|++|| ..++.  +...+..+...+.. ++|||||++|+..+..
T Consensus       322 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~  380 (723)
T 1xfd_A          322 FIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE  380 (723)
T ss_dssp             EEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS
T ss_pred             EEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcC
Confidence            4  45677      577777 34433  15555543344544 7999999999877654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=1.7e-20  Score=185.04  Aligned_cols=273  Identities=7%  Similarity=-0.048  Sum_probs=174.5

Q ss_pred             CeEEEEEcCCCCeEEEEeCC---------CcEEEEECCCceeeeee---ecCCceEEEEEeCCCCeEEEecCCcEEEEEe
Q 019384           21 GISNLRFSNHSDHLLVSSWD---------KSVRLYDASANVLRGEF---MHGGPVLDCCFHDDSSGFSASADHTVRRLVF   88 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~D---------gti~vwd~~~~~~~~~~---~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~   88 (342)
                      .|.+++|||||++||+++.|         ++++|||+.+++.....   .|...+..++|+|+++.+..+.++.|.+|+.
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~  141 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAH  141 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEEC
Confidence            59999999999999999875         78889999887653332   3444588999998887665555689999999


Q ss_pred             ccCceee-cccCCcc------------------eeEEEEeCCCCEEEEeeCCC---------------------------
Q 019384           89 SHGKEDI-LGKHDAP------------------VRCIEYSYAAGQVITGSWDK---------------------------  122 (342)
Q Consensus        89 ~~~~~~~-~~~h~~~------------------V~~~~~~~~~~~l~sgs~D~---------------------------  122 (342)
                      .+++... ...+...                  +.+++|+||++.|++++.|+                           
T Consensus       142 ~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (723)
T 1xfd_A          142 VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA  221 (723)
T ss_dssp             SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred             CCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCC
Confidence            8876443 3333332                  37899999999999887653                           


Q ss_pred             -------cEEEEcCCCCCCcceeeeeecC----CCCcE--EEEeccCCeEEEEEcC----CeEEEEeCCCCCCccccccc
Q 019384          123 -------SLKCWDPRGASGQERTLVGTYP----QPERV--YSLSLVGNRLVVATAG----RHVNVYDLRNMSQPEQRRES  185 (342)
Q Consensus       123 -------~I~iWd~~~~~~~~~~~~~~~~----~~~~v--~~~s~~~~~~~~~s~d----~~v~iwd~~~~~~~~~~~~~  185 (342)
                             +|++||+.++...  ..+....    ....+  ..++++++.+++.+..    ..|.+||+.+++....... 
T Consensus       222 G~~~~~~~l~~~d~~~~~~~--~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-  298 (723)
T 1xfd_A          222 GSENPSISLHVIGLNGPTHD--LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED-  298 (723)
T ss_dssp             TSCCCEEEEEEEESSSSCCC--EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-
T ss_pred             CCCCCeeEEEEEECCCCcee--EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe-
Confidence                   7899998754321  1121110    12223  3455566666555433    4699999987643221111 


Q ss_pred             ccceee----EEEEEeeCCceEEEE--ccCC----eEEEEEeechhhhhc-ccceeeeEEecCCCCceeeeee-EEEEcC
Q 019384          186 SLKYQT----RCVRCYPNGTGYALS--SVEG----RVAMEFFDLSEASQA-KKYAFKCHRKSEAGRDIVYPVN-AIAFHP  253 (342)
Q Consensus       186 ~~~~~~----~~v~~~~~~~~~~~~--s~~~----~~~i~~~d~~~~~~~-~~~~~~~h~~~~~~~~~~~~v~-~v~~sp  253 (342)
                      .....+    ..++|+|+|+.++..  ..++    ...+++||....... ....+..+.         ..+. .++|+|
T Consensus       299 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~---------~~~~~~~~~sp  369 (723)
T 1xfd_A          299 ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD---------WDVTKILAYDE  369 (723)
T ss_dssp             ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS---------SCEEEEEEEET
T ss_pred             ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC---------eEEEeeeEEcC
Confidence            111111    267899999977754  3555    667888883222110 011111100         0233 368999


Q ss_pred             CCCeEEEecCC---CeEEEEeCCCc--eeeeccCC---CCcceEEEEECCCCCEEEEEEe
Q 019384          254 IYGTFATGGCD---GFVNVWDGNNK--KRLYQYSK---YPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       254 ~~~~l~sgs~D---g~I~iWd~~~~--~~~~~~~~---~~~~V~~v~~spdg~~las~s~  305 (342)
                      +|+.|+..+.+   ++++||++...  .....+..   |...+..++|||||++|+...+
T Consensus       370 dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          370 KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence            99998765444   78999987642  23334443   5677899999999999887654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.86  E-value=2.1e-19  Score=160.38  Aligned_cols=272  Identities=10%  Similarity=0.005  Sum_probs=167.0

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCC-CcEEEEECC--Ccee--eeeeecCCceEEEEEeCCCC-eEEEe-cCCcEEEEEec
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWD-KSVRLYDAS--ANVL--RGEFMHGGPVLDCCFHDDSS-GFSAS-ADHTVRRLVFS   89 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~D-gti~vwd~~--~~~~--~~~~~h~~~V~~~~~~~~~~-~~s~s-~D~~i~~w~~~   89 (342)
                      .+...+.+++|+|++++|++++.+ ++|++|++.  ++.+  .......+.+..++|++++. +++++ .++.+.+|++.
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence            456678899999999999988887 999999997  4443  23333345888999998877 44555 47889999995


Q ss_pred             cC---ceeecccCCcceeEEEEeCCCCEEEEee-CCCcEEEEcCCCCCCcceee--eeecCCCCcE--EEEeccCCeEEE
Q 019384           90 HG---KEDILGKHDAPVRCIEYSYAAGQVITGS-WDKSLKCWDPRGASGQERTL--VGTYPQPERV--YSLSLVGNRLVV  161 (342)
Q Consensus        90 ~~---~~~~~~~h~~~V~~~~~~~~~~~l~sgs-~D~~I~iWd~~~~~~~~~~~--~~~~~~~~~v--~~~s~~~~~~~~  161 (342)
                      .+   ...........+.+++|+|+++.|++++ .|+.|++||+++........  .........+  +.++.+++.+++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~  194 (343)
T 1ri6_A          115 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC  194 (343)
T ss_dssp             TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred             CCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEE
Confidence            22   2222223334688999999999887776 89999999987522111100  1111111223  345556666655


Q ss_pred             EE-cCCeEEEEeCCC--CCCccccccc--cc----ceeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhcccceee
Q 019384          162 AT-AGRHVNVYDLRN--MSQPEQRRES--SL----KYQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQAKKYAFK  231 (342)
Q Consensus       162 ~s-~d~~v~iwd~~~--~~~~~~~~~~--~~----~~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~~~~~~~  231 (342)
                      ++ .++.|.+||+..  +.........  ..    ......++++|+++.++++ ..++.+  .+||.......... +.
T Consensus       195 ~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i--~v~d~~~~~~~~~~-~~  271 (343)
T 1ri6_A          195 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLI--TVFSVSEDGSVLSK-EG  271 (343)
T ss_dssp             EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEE--EEEEECTTSCCEEE-EE
T ss_pred             EeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEE--EEEEEcCCCCceEE-ee
Confidence            54 778999999954  2111010000  00    1234578899999877654 456655  56887521111111 00


Q ss_pred             eEEecCCCCceeeeeeEEEEcCCCCeEEEec-CCCeEEEEe--CCCce--eeeccCCCCcceEEEEECCCCCE
Q 019384          232 CHRKSEAGRDIVYPVNAIAFHPIYGTFATGG-CDGFVNVWD--GNNKK--RLYQYSKYPTSIAALSFSRDGRL  299 (342)
Q Consensus       232 ~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs-~Dg~I~iWd--~~~~~--~~~~~~~~~~~V~~v~~spdg~~  299 (342)
                       ....      ...+..++|+|++++|++++ .|+.|.+|+  .++++  .+..+... ....+++|.|+.+.
T Consensus       272 -~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~~  336 (343)
T 1ri6_A          272 -FQPT------ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEGG  336 (343)
T ss_dssp             -EEEC------SSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC--
T ss_pred             -eecC------CCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccCC
Confidence             0000      01267899999999887776 689999995  44553  33344332 34567788776553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=2.1e-20  Score=191.81  Aligned_cols=265  Identities=13%  Similarity=0.033  Sum_probs=188.8

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECC--CceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDAS--ANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~--~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~   93 (342)
                      ..|...+.+++|+++ .++++++.|++++||++.  ++.......|. .+...+|+++++.+..+.++.+.+|+......
T Consensus       200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l  277 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSKGGSIYIFNPDTEKI  277 (1045)
T ss_dssp             ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEETTEEEEECTTTCCE
T ss_pred             cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEeCCEEEEecCCceEe
Confidence            467889999999988 667788889999999864  33333333343 46677899888765555799999999854443


Q ss_pred             eeccc-----------CCcceeEEEEe-CCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC-cEEEEec-cCCeE
Q 019384           94 DILGK-----------HDAPVRCIEYS-YAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE-RVYSLSL-VGNRL  159 (342)
Q Consensus        94 ~~~~~-----------h~~~V~~~~~~-~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~-~v~~~s~-~~~~~  159 (342)
                      ..+..           |...+.+++|+ |+++.|++++ ++.|.+|++..+..  . .+..  +.. .+..+.+ +++.+
T Consensus       278 ~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~--~-~~~~--~~~~~~~~~~~sdg~~l  351 (1045)
T 1k32_A          278 EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV--L-KVPE--PLRIRYVRRGGDTKVAF  351 (1045)
T ss_dssp             EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE--E-ECSC--CSCEEEEEECSSSEEEE
T ss_pred             eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce--E-EccC--CCcceEEeeeEcCCCeE
Confidence            33333           45579999999 9999998887 88999999864321  1 1211  222 3444444 55578


Q ss_pred             EEEEcCCeEE-EEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384          160 VVATAGRHVN-VYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA  238 (342)
Q Consensus       160 ~~~s~d~~v~-iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~  238 (342)
                      ++++.+..+. +||+......  ... .....+..++++|+++.+++++.++.+  ++||.......  ..+..|.    
T Consensus       352 ~~~s~~~~l~~~~d~~~~~~~--~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v--~~~d~~tg~~~--~~~~~~~----  420 (1045)
T 1k32_A          352 IHGTREGDFLGIYDYRTGKAE--KFE-ENLGNVFAMGVDRNGKFAVVANDRFEI--MTVDLETGKPT--VIERSRE----  420 (1045)
T ss_dssp             EEEETTEEEEEEEETTTCCEE--ECC-CCCCSEEEEEECTTSSEEEEEETTSEE--EEEETTTCCEE--EEEECSS----
T ss_pred             EEEECCCceEEEEECCCCCce--Eec-CCccceeeeEECCCCCEEEEECCCCeE--EEEECCCCceE--EeccCCC----
Confidence            8888877788 8898765321  111 233456789999999999999888765  56998543211  1111221    


Q ss_pred             CCceeeeeeEEEEcCCCCeEEEecCCC----------eEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          239 GRDIVYPVNAIAFHPIYGTFATGGCDG----------FVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       239 ~~~~~~~v~~v~~sp~~~~l~sgs~Dg----------~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                           ..+.+++|+|||++|++++.++          .|++||+.+++ +..+..|...+.+++|+|||++|+.++.
T Consensus       421 -----~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          421 -----AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             -----SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             -----CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEec
Confidence                 2578899999999998887654          99999999877 6677888888999999999999998876

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=8e-20  Score=187.53  Aligned_cols=276  Identities=9%  Similarity=-0.035  Sum_probs=188.0

Q ss_pred             CCCCeEEEEEc-CCCCeEEEEeCCCcEEEEECCCceeeeeeecCC-ceEEEEEeCCCC-eEEEecCCcEE-EEEeccCce
Q 019384           18 PSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGG-PVLDCCFHDDSS-GFSASADHTVR-RLVFSHGKE   93 (342)
Q Consensus        18 ~~~~V~~l~fs-~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~-~V~~~~~~~~~~-~~s~s~D~~i~-~w~~~~~~~   93 (342)
                      |...|.+++|| |||++|++++ ++.+.+|++.++.......|.+ .+..+.|+ ++. ++.++.+..+. +|+..++..
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~  371 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA  371 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc
Confidence            34579999999 9999999887 8899999998877666666777 89999999 765 55677766777 778877765


Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC-------
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR-------  166 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~-------  166 (342)
                      ..+.+|...+.+++|+||++.|++++.|+.|++||++++..  ......+......+.++++++.+++++.++       
T Consensus       372 ~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~--~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~  449 (1045)
T 1k32_A          372 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP--TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY  449 (1045)
T ss_dssp             EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred             eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce--EEeccCCCCCccceEECCCCCeEEEEecCccccccCC
Confidence            55558888999999999999999999999999999975432  222223333334566788888888877654       


Q ss_pred             ---eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh-------------------
Q 019384          167 ---HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ-------------------  224 (342)
Q Consensus       167 ---~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~-------------------  224 (342)
                         +|++||+.++. .. .. .........++|+|+|+.+++.+.++...+  |+......                   
T Consensus       450 ~~~~i~l~d~~~g~-~~-~l-~~~~~~~~~~~~spdG~~l~~~s~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (1045)
T 1k32_A          450 VMQAIHVYDMEGRK-IF-AA-TTENSHDYAPAFDADSKNLYYLSYRSLDPS--PDRVVLNFSFEVVSKPFVIPLIPGSPN  524 (1045)
T ss_dssp             CEEEEEEEETTTTE-EE-EC-SCSSSBEEEEEECTTSCEEEEEESCCCCCE--ECSSSSCEECCSCBEEEEEESSTTCCC
T ss_pred             CCCeEEEEECCCCc-EE-Ee-eCCCcccCCceEcCCCCEEEEEecccCCcC--cchhccccccccCceeEEEEeCCCCCC
Confidence               89999998753 11 11 122234567889999999888876443221  22110000                   


Q ss_pred             c------------ccceeeeEEec-CCCCceeeeeeEEEEcCCCCeEEE-------------ecCCCeEEEEeCCCceee
Q 019384          225 A------------KKYAFKCHRKS-EAGRDIVYPVNAIAFHPIYGTFAT-------------GGCDGFVNVWDGNNKKRL  278 (342)
Q Consensus       225 ~------------~~~~~~~h~~~-~~~~~~~~~v~~v~~sp~~~~l~s-------------gs~Dg~I~iWd~~~~~~~  278 (342)
                      .            ..+.+.+.... .....+...+..++++|++.++++             ...+..|++||..+++..
T Consensus       525 ~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~  604 (1045)
T 1k32_A          525 PTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT  604 (1045)
T ss_dssp             GGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE
T ss_pred             ccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEE
Confidence            0            00000000000 000011235788999999987775             123557888998877643


Q ss_pred             eccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          279 YQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       279 ~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                       .+.   ..+.+++|||||++|++++..
T Consensus       605 -~l~---~~v~~~~~S~DG~~l~~~~~~  628 (1045)
T 1k32_A          605 -EVK---NNLTDLRLSADRKTVMVRKDD  628 (1045)
T ss_dssp             -EEE---EEEEEEEECTTSCEEEEEETT
T ss_pred             -Eee---cCcceEEECCCCCEEEEEcCC
Confidence             222   668999999999999988754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=9.2e-19  Score=157.34  Aligned_cols=262  Identities=12%  Similarity=0.040  Sum_probs=164.9

Q ss_pred             CCCcEEEEECC--Cceee--eeeecCCceEEEEEeCCCCeEEEec---CCcEEEEEeccCceee---cccCCcceeEEEE
Q 019384           39 WDKSVRLYDAS--ANVLR--GEFMHGGPVLDCCFHDDSSGFSASA---DHTVRRLVFSHGKEDI---LGKHDAPVRCIEY  108 (342)
Q Consensus        39 ~Dgti~vwd~~--~~~~~--~~~~h~~~V~~~~~~~~~~~~s~s~---D~~i~~w~~~~~~~~~---~~~h~~~V~~~~~  108 (342)
                      .++.|.+|+++  ++++.  ....+...+..++|++++++++++.   ++.|.+|++..+....   +..+...+..++|
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~   93 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV   93 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence            45678888764  45432  3445677788999998888766655   5789999997765332   2446778899999


Q ss_pred             eCCCCEEEEee-CCCcEEEEcCCCCCCcceeeeeecCC------------CCcEEEEeccCCeEEEEEcCCeEEEEeCC-
Q 019384          109 SYAAGQVITGS-WDKSLKCWDPRGASGQERTLVGTYPQ------------PERVYSLSLVGNRLVVATAGRHVNVYDLR-  174 (342)
Q Consensus       109 ~~~~~~l~sgs-~D~~I~iWd~~~~~~~~~~~~~~~~~------------~~~v~~~s~~~~~~~~~s~d~~v~iwd~~-  174 (342)
                      +|++++|++++ .+++|++||+..... . ..+.....            ....+.++.+++.+++...++.|.+||+. 
T Consensus        94 spdg~~l~~~~~~~~~v~v~~~~~~g~-~-~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~  171 (347)
T 3hfq_A           94 DEARQLVYSANYHKGTAEVMKIAADGA-L-TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD  171 (347)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECTTSC-E-EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred             CCCCCEEEEEeCCCCEEEEEEeCCCCC-e-eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence            99999888777 778999999853211 1 11111111            01124566677745555567889999998 


Q ss_pred             CCCCccc-ccccccceeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhcccceeeeEEec-CCCCceeeeeeEEEE
Q 019384          175 NMSQPEQ-RRESSLKYQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQAKKYAFKCHRKS-EAGRDIVYPVNAIAF  251 (342)
Q Consensus       175 ~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~-~~~~~~~~~v~~v~~  251 (342)
                      ++..... ............++++|+++.+++. ..++.+.  +|+.........  ....... ..+......+..++|
T Consensus       172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~--v~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~i~~  247 (347)
T 3hfq_A          172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIA--SLKYDTQTGAFT--QLGIVKTIPADYTAHNGAAAIRL  247 (347)
T ss_dssp             TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEE--EEEEETTTTEEE--EEEEEESSCTTCCSCCEEEEEEE
T ss_pred             CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEE--EEEecCCCCceE--EeeeeeecCCCCCCCCcceeEEE
Confidence            3321111 0011112245678999999966654 5566654  466542111110  0000000 000001124778999


Q ss_pred             cCCCCeE-EEecCCCeEEEEeCCC---ceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          252 HPIYGTF-ATGGCDGFVNVWDGNN---KKRLYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       252 sp~~~~l-~sgs~Dg~I~iWd~~~---~~~~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      +|+|++| +++..+++|.+|++..   .+.+..+..+...+.+++|+|||++|++++..
T Consensus       248 spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  306 (347)
T 3hfq_A          248 SHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN  306 (347)
T ss_dssp             CTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT
T ss_pred             CCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC
Confidence            9999977 5666789999999872   24455666666678999999999999888764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=1.7e-19  Score=157.14  Aligned_cols=236  Identities=13%  Similarity=0.071  Sum_probs=155.5

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC-ceeeeee-ec-CCceEEEEEeCCCCeE-EEe--cCCcEEEEEec-
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEF-MH-GGPVLDCCFHDDSSGF-SAS--ADHTVRRLVFS-   89 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~-~~~~~~~-~h-~~~V~~~~~~~~~~~~-s~s--~D~~i~~w~~~-   89 (342)
                      .|...|.+++|+|++++|++++ ++.|++||+.+ +...... .| ...|.+++|+++++.+ +++  .++..++|.++ 
T Consensus        39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~  117 (297)
T 2ojh_A           39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS  117 (297)
T ss_dssp             EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET
T ss_pred             cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEEC
Confidence            4577899999999999999886 88999999988 7655443 33 3678899999887754 555  33566677664 


Q ss_pred             -cCceeecccCCcceeEEEEeCCCCEEE-EeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEE-cCC
Q 019384           90 -HGKEDILGKHDAPVRCIEYSYAAGQVI-TGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVAT-AGR  166 (342)
Q Consensus        90 -~~~~~~~~~h~~~V~~~~~~~~~~~l~-sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s-~d~  166 (342)
                       ++....+..+. .+.+++|+|+++.|+ +++.|+.+++|+++...... ..+...........++.+++.+++++ .++
T Consensus       118 ~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  195 (297)
T 2ojh_A          118 TGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLTHGEGRNDGPDYSPDGRWIYFNSSRTG  195 (297)
T ss_dssp             TCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EECCCSSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             CCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEcccCCCccccceECCCCCEEEEEecCCC
Confidence             34434444433 488999999999876 78899999999864322221 12222222222344555666677665 488


Q ss_pred             eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC---------CeEEEEEeechhhhhcccceeeeEEecC
Q 019384          167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE---------GRVAMEFFDLSEASQAKKYAFKCHRKSE  237 (342)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~---------~~~~i~~~d~~~~~~~~~~~~~~h~~~~  237 (342)
                      .+++|++.......... ......+.++.++|+++.+++++.+         +...+++||...........+..|.   
T Consensus       196 ~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~---  271 (297)
T 2ojh_A          196 QMQIWRVRVDGSSVERI-TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQ---  271 (297)
T ss_dssp             SCEEEEEETTSSCEEEC-CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEEST---
T ss_pred             CccEEEECCCCCCcEEE-ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCC---
Confidence            89999876322221111 1223456778899999998888765         3467888998643222222222221   


Q ss_pred             CCCceeeeeeEEEEcCCCCeEEEecCCC
Q 019384          238 AGRDIVYPVNAIAFHPIYGTFATGGCDG  265 (342)
Q Consensus       238 ~~~~~~~~v~~v~~sp~~~~l~sgs~Dg  265 (342)
                            ..+.+++|+|+++.|++++.|.
T Consensus       272 ------~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          272 ------GTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             ------TTSCSCCBCTTSSEEEEEEECC
T ss_pred             ------cccccceECCCCCEEEEEEecc
Confidence                  1477899999999998877653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.84  E-value=1.3e-18  Score=155.80  Aligned_cols=276  Identities=9%  Similarity=0.048  Sum_probs=166.9

Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCC--ceEEEEEeCCCC-eE-EEecCCcEEEEEeccCcee-ecc-
Q 019384           24 NLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGG--PVLDCCFHDDSS-GF-SASADHTVRRLVFSHGKED-ILG-   97 (342)
Q Consensus        24 ~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~--~V~~~~~~~~~~-~~-s~s~D~~i~~w~~~~~~~~-~~~-   97 (342)
                      .+++++++.++++++.|++|++||+.+++....+....  .+..++|++++. ++ +...++.|.+|+..+++.. .+. 
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45678889999999999999999999887666554444  678899998876 43 4456889999999887643 222 


Q ss_pred             cC-----CcceeEEEEeCCCCEEEEeeCC------------CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEE
Q 019384           98 KH-----DAPVRCIEYSYAAGQVITGSWD------------KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLV  160 (342)
Q Consensus        98 ~h-----~~~V~~~~~~~~~~~l~sgs~D------------~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~  160 (342)
                      .+     ...+.+++|+|++++|++++.+            +.|.+||++++...................++.+++ ++
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~  162 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY  162 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EE
Confidence            22     3347899999999999988865            899999987532111111111111222334666666 55


Q ss_pred             EEEcCCeEEEEeCCCCCCcccccccc--c--------------------ceeeEEEEEeeCCceEEEEccCCeEEEEEee
Q 019384          161 VATAGRHVNVYDLRNMSQPEQRRESS--L--------------------KYQTRCVRCYPNGTGYALSSVEGRVAMEFFD  218 (342)
Q Consensus       161 ~~s~d~~v~iwd~~~~~~~~~~~~~~--~--------------------~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d  218 (342)
                      ++  ++.|.+||+.+++.........  .                    -.....+++.+++....... +....+..+|
T Consensus       163 ~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~  239 (349)
T 1jmx_B          163 VA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA-DLLYGYLSVD  239 (349)
T ss_dssp             EE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC-EEEEEEEEEE
T ss_pred             Ec--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc-ccceeEEEEe
Confidence            54  4459999998764321111000  0                    00123344444331110000 0111111133


Q ss_pred             chhhhhcccceeeeEEecCCCCceeeeeeEEEEcC-CCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCC
Q 019384          219 LSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP-IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDG  297 (342)
Q Consensus       219 ~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp-~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg  297 (342)
                      .... ....+.+..+         ...+..++|+| ++++|+++  ++.|++||.++++.+..+.. ...+.+++|+|||
T Consensus       240 ~~~~-~~~~~~~~~~---------~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg  306 (349)
T 1jmx_B          240 LKTG-KTHTQEFADL---------TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKG  306 (349)
T ss_dssp             TTTC-CEEEEEEEEC---------SSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSS
T ss_pred             ccCC-cEEecccccC---------CCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCC
Confidence            3221 1111111110         11367899999 99999888  89999999999887766542 2457899999999


Q ss_pred             CEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          298 RLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       298 ~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      ++|++++.+.           .|.+|+++.
T Consensus       307 ~~l~~~~~~~-----------~v~v~d~~~  325 (349)
T 1jmx_B          307 DKLYLGGTFN-----------DLAVFNPDT  325 (349)
T ss_dssp             SCEEEESBSS-----------EEEEEETTT
T ss_pred             CEEEEecCCC-----------eEEEEeccc
Confidence            9888754322           377777654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.84  E-value=6.2e-18  Score=150.63  Aligned_cols=275  Identities=9%  Similarity=-0.017  Sum_probs=163.0

Q ss_pred             CCCeEEEEEcCCCCeEEEEeC-CCcEEEEECCCcee-eeeee-cCCceEEEEEeCCCCeEEEecCC----cEEEEEeccC
Q 019384           19 SDGISNLRFSNHSDHLLVSSW-DKSVRLYDASANVL-RGEFM-HGGPVLDCCFHDDSSGFSASADH----TVRRLVFSHG   91 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~-Dgti~vwd~~~~~~-~~~~~-h~~~V~~~~~~~~~~~~s~s~D~----~i~~w~~~~~   91 (342)
                      ...+ .++|+|++++|++++. +++|.+||..++++ ..... +..+..+++|++++..+.++.+.    .|.+|++.++
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~  118 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN  118 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC
Confidence            4455 9999999997776665 89999999988765 44443 44444449999888755455444    8999999887


Q ss_pred             ceeecccCCcceeEEEEeCCCCEEE-EeeCCCc-EEEEcCCCCCCcceeeeeecC--CCCcEEEEeccCCeEEEE-EcCC
Q 019384           92 KEDILGKHDAPVRCIEYSYAAGQVI-TGSWDKS-LKCWDPRGASGQERTLVGTYP--QPERVYSLSLVGNRLVVA-TAGR  166 (342)
Q Consensus        92 ~~~~~~~h~~~V~~~~~~~~~~~l~-sgs~D~~-I~iWd~~~~~~~~~~~~~~~~--~~~~v~~~s~~~~~~~~~-s~d~  166 (342)
                      +......+.....+++|+|++++|+ ++..++. |.+|++...............  .....+.++.+++.++++ ..++
T Consensus       119 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  198 (331)
T 3u4y_A          119 KFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGN  198 (331)
T ss_dssp             EEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTT
T ss_pred             CeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCC
Confidence            7443333345568999999998554 5566688 999998743221100011111  112234555666655544 4678


Q ss_pred             eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384          167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV  246 (342)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v  246 (342)
                      .|.+||+.+++................++++|+++.++++... ...+.+||...........+..+..  ........+
T Consensus       199 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~  275 (331)
T 3u4y_A          199 SIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTES-TVDVFNFNQLSGTLSFVKSFGHGLL--IDPRPLFGA  275 (331)
T ss_dssp             EEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSS-EEEEEEEETTTTEEEEEEEEECCCC--CCCGGGTTC
T ss_pred             eEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcC-CCEEEEEECCCCceeeecccccccc--cCCCCcccc
Confidence            9999999876541101111122345678899999977766542 3346779986432211111111100  000111123


Q ss_pred             eEEEEcCCCCeEEE-ecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCC
Q 019384          247 NAIAFHPIYGTFAT-GGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGR  298 (342)
Q Consensus       247 ~~v~~sp~~~~l~s-gs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~  298 (342)
                      +.++|+|++++|++ +..+++|++||+..... .........-....+.||+.
T Consensus       276 ~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-~~~~~~~~~g~~~~~~~~~~  327 (331)
T 3u4y_A          276 NQMALNKTETKLFISANISRELKVFTISGKVV-GYVAGIEANGGIAICHPDKH  327 (331)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTSCEE-EECTTCCCBSCEEECCCC--
T ss_pred             cceEECCCCCEEEEecCCCCcEEEEEecCCcc-cceecccccCCeEEECCccc
Confidence            56899999998754 55677999999986543 22333322222344455543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.83  E-value=7.5e-19  Score=160.08  Aligned_cols=285  Identities=12%  Similarity=0.055  Sum_probs=175.5

Q ss_pred             EEEcCCCCeEEEEeC-CCc--EEEEECCCceeeeee-ecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCcee-eccc
Q 019384           25 LRFSNHSDHLLVSSW-DKS--VRLYDASANVLRGEF-MHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKED-ILGK   98 (342)
Q Consensus        25 l~fs~~~~~l~s~s~-Dgt--i~vwd~~~~~~~~~~-~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~-~~~~   98 (342)
                      .+|||||++|+.++. |++  |.+||+.+++.+... .+...+..+.|+|+++ ++.++.++.+.+|++.+++.. .+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            899999999998887 774  778888887765544 3444555778998776 457777889999999988754 3344


Q ss_pred             CCcceeEEE--EeCCCCEEEE----------------------eeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec
Q 019384           99 HDAPVRCIE--YSYAAGQVIT----------------------GSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL  154 (342)
Q Consensus        99 h~~~V~~~~--~~~~~~~l~s----------------------gs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~  154 (342)
                      +...+....  +++++..++.                      ...+..|.+||+.++..  . .+...........+++
T Consensus       121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~--~-~l~~~~~~~~~~~~sp  197 (388)
T 3pe7_A          121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES--T-VILQENQWLGHPIYRP  197 (388)
T ss_dssp             CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE--E-EEEEESSCEEEEEEET
T ss_pred             hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce--E-EeecCCccccccEECC
Confidence            555454443  4788888763                      23456899999876432  2 2222222223345666


Q ss_pred             -cCCeEEEEEcCC------eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-CCe--EEEEEeechhhhh
Q 019384          155 -VGNRLVVATAGR------HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-EGR--VAMEFFDLSEASQ  224 (342)
Q Consensus       155 -~~~~~~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~--~~i~~~d~~~~~~  224 (342)
                       +++.++.+..+.      .|.++|+...... ..........+....|+|+|+.++..+. ++.  ..+++||......
T Consensus       198 ~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          198 YDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             TEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred             CCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence             667777776542      6777887654321 1111111123556789999997765543 222  2478899865432


Q ss_pred             cccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEe---------cCCCeEEEEeCCCceeeeccCCCCc---------
Q 019384          225 AKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATG---------GCDGFVNVWDGNNKKRLYQYSKYPT---------  286 (342)
Q Consensus       225 ~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sg---------s~Dg~I~iWd~~~~~~~~~~~~~~~---------  286 (342)
                      .....+..+...      ......++|+|||+.|+..         ..+..|++||..+++. ..+..+..         
T Consensus       277 ~~l~~~~~~~~~------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~  349 (388)
T 3pe7_A          277 RQLTSMPACSHL------MSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDR  349 (388)
T ss_dssp             EEEEEECCEEEE------EECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBS
T ss_pred             EEEEcCCCceee------eecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCccccccccc
Confidence            221122111100      0012234799999988754         4567999999988654 33444444         


Q ss_pred             --ceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccCC
Q 019384          287 --SIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEI  328 (342)
Q Consensus       287 --~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~  328 (342)
                        .+.+++|||||++|+.++..+        ....|.+.++.+.
T Consensus       350 ~~~~~~~~~spDg~~l~~~s~~~--------g~~~l~~~~l~~~  385 (388)
T 3pe7_A          350 QVTHPHPSFTPDDKQILFTSDVH--------GKPALYLATLPES  385 (388)
T ss_dssp             STTCCCCEECTTSSEEEEEECTT--------SSCEEEEEECCGG
T ss_pred             ccCCCCccCCCCCCEEEEEecCC--------CceeEEEEECChh
Confidence              578899999999998877432        1234666666543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.82  E-value=4.3e-19  Score=157.98  Aligned_cols=240  Identities=10%  Similarity=-0.027  Sum_probs=157.8

Q ss_pred             CeEEEEEcCCCCeE-EEEeCCCcEEEEECCCceeeeeeecCC------ceEEEEEeCCCCe-EEEe------------cC
Q 019384           21 GISNLRFSNHSDHL-LVSSWDKSVRLYDASANVLRGEFMHGG------PVLDCCFHDDSSG-FSAS------------AD   80 (342)
Q Consensus        21 ~V~~l~fs~~~~~l-~s~s~Dgti~vwd~~~~~~~~~~~h~~------~V~~~~~~~~~~~-~s~s------------~D   80 (342)
                      .+..++|+|+++++ ++++.++.|.+||+.+++....+....      .+.+++|++++.. ++++            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            47899999999876 556678999999998877655443322      6778999987754 4554            57


Q ss_pred             CcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEE
Q 019384           81 HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLV  160 (342)
Q Consensus        81 ~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~  160 (342)
                      +.|.+|+..+++..........+.+++|+|++++|+++  ++.|.+||+++...  ...+....... ...++.++..++
T Consensus       115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~--~~~~~~~~~~~-~~~~s~dg~~l~  189 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTL--VEDKPIQSWEA-ETYAQPDVLAVW  189 (337)
T ss_dssp             CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEE--EEEECSTTTTT-TTBCCCBCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcE--eeeeeccccCC-CceeCCCccEEe
Confidence            89999999877643222234567889999999988777  68999999875432  11111111011 113445544333


Q ss_pred             EEEcC-C-----------------------eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEE
Q 019384          161 VATAG-R-----------------------HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEF  216 (342)
Q Consensus       161 ~~s~d-~-----------------------~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~  216 (342)
                      ..... +                       .|.+||+.+.+.. ............+++++|+++.++++  ++.  +++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~--v~~  264 (337)
T 1pby_B          190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNV--LES  264 (337)
T ss_dssp             CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESE--EEE
T ss_pred             eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCe--EEE
Confidence            22211 1                       4789999876432 11111122345678999999988877  444  567


Q ss_pred             eechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC
Q 019384          217 FDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS  282 (342)
Q Consensus       217 ~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  282 (342)
                      ||.........  +..+          ..+.+++|+|++++|++++.|+.|++||.++++.+..+.
T Consensus       265 ~d~~~~~~~~~--~~~~----------~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          265 FDLEKNASIKR--VPLP----------HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EETTTTEEEEE--EECS----------SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             EECCCCcCcce--ecCC----------CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence            99854322111  1110          136789999999999989999999999999887776654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=3.7e-17  Score=147.73  Aligned_cols=266  Identities=9%  Similarity=0.013  Sum_probs=161.8

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCC----CcEEEEECCC--ceeee--ee-ecCCceEEEEEeCCCCeEEEe-cCCcEEEEE
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWD----KSVRLYDASA--NVLRG--EF-MHGGPVLDCCFHDDSSGFSAS-ADHTVRRLV   87 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~D----gti~vwd~~~--~~~~~--~~-~h~~~V~~~~~~~~~~~~s~s-~D~~i~~w~   87 (342)
                      +...+..++|+||+++|++++.+    +.|++|++..  +.+..  .. .+...+..+++ +++.+++++ .++.+.+|+
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~  126 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFP  126 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEE
Confidence            45677889999999999999886    8999999854  44322  22 24456677777 555566555 578899999


Q ss_pred             eccCce-eec--------------ccCCcceeEEEEeCCCCEEEE-eeCCCcEEEEcCCCCCC----c-c-e----eeee
Q 019384           88 FSHGKE-DIL--------------GKHDAPVRCIEYSYAAGQVIT-GSWDKSLKCWDPRGASG----Q-E-R----TLVG  141 (342)
Q Consensus        88 ~~~~~~-~~~--------------~~h~~~V~~~~~~~~~~~l~s-gs~D~~I~iWd~~~~~~----~-~-~----~~~~  141 (342)
                      +..... ..+              ..+...+.+++|+|++++|+. +..++.|++|++.....    . . .    ....
T Consensus       127 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~  206 (361)
T 3scy_A          127 IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK  206 (361)
T ss_dssp             BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE
T ss_pred             eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee
Confidence            875431 111              112334688999999986654 45588999998764332    1 1 0    0111


Q ss_pred             e-cCCCCcEEEEeccCCeEEEEE-cCCeEEEEeCCCCCCccccccccc---ceeeEEEEEeeCCceEEEEccC--CeEEE
Q 019384          142 T-YPQPERVYSLSLVGNRLVVAT-AGRHVNVYDLRNMSQPEQRRESSL---KYQTRCVRCYPNGTGYALSSVE--GRVAM  214 (342)
Q Consensus       142 ~-~~~~~~v~~~s~~~~~~~~~s-~d~~v~iwd~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~s~~--~~~~i  214 (342)
                      . .......+.++.+++.++++. .++.|.+||+.++...........   ......++++|+++.++++..+  +.+  
T Consensus       207 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i--  284 (361)
T 3scy_A          207 VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV--  284 (361)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE--
T ss_pred             cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE--
Confidence            1 111122345666677777666 578999999975422111100000   1124588899999988766554  554  


Q ss_pred             EEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEec-CCCeEEEE--eCCCceeeecc-CCCCcceEE
Q 019384          215 EFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGG-CDGFVNVW--DGNNKKRLYQY-SKYPTSIAA  290 (342)
Q Consensus       215 ~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs-~Dg~I~iW--d~~~~~~~~~~-~~~~~~V~~  290 (342)
                      .+|++......  .........  +    ..+..++|+|+|++|++++ .++.|.+|  |.++++..... ..+...+.|
T Consensus       285 ~v~~~~~~~g~--~~~~~~~~~--g----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~  356 (361)
T 3scy_A          285 AIFKVDETNGT--LTKVGYQLT--G----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVC  356 (361)
T ss_dssp             EEEEECTTTCC--EEEEEEEEC--S----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEE
T ss_pred             EEEEEcCCCCc--EEEeeEecC--C----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeE
Confidence            55776421111  111111110  0    1367899999999887776 67899996  44566554332 223456888


Q ss_pred             EEEC
Q 019384          291 LSFS  294 (342)
Q Consensus       291 v~~s  294 (342)
                      ++|.
T Consensus       357 v~~~  360 (361)
T 3scy_A          357 LKFV  360 (361)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            8885

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=6.1e-18  Score=167.51  Aligned_cols=269  Identities=10%  Similarity=-0.001  Sum_probs=171.7

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee-ecCCc-----eEEEEEeCCCCeE-EEecC---------Cc
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF-MHGGP-----VLDCCFHDDSSGF-SASAD---------HT   82 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~-~h~~~-----V~~~~~~~~~~~~-s~s~D---------~~   82 (342)
                      .....+++|+||+++|+++  |++|++||+.++.....+ .|...     ..++.|+|+++.+ .++.+         +.
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            3456799999999988886  999999999887654443 33322     2447889888754 55554         45


Q ss_pred             EEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-----------------C
Q 019384           83 VRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP-----------------Q  145 (342)
Q Consensus        83 i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-----------------~  145 (342)
                      +.+||+.+++...+..|...+...+|+|||+.|+.+ .|+.|.+||+.++... +.......                 .
T Consensus        94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~-~lt~~g~~~~~~~g~~~~v~~ee~~~  171 (740)
T 4a5s_A           94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSY-RITWTGKEDIIYNGITDWVYEEEVFS  171 (740)
T ss_dssp             EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCE-ECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceE-EEcCCCCccceecCcccccccchhcC
Confidence            669999998877777888889999999999999887 4789999998754321 11111100                 0


Q ss_pred             CCcEEEEeccCCeEEEEEcCCe-EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechh---
Q 019384          146 PERVYSLSLVGNRLVVATAGRH-VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSE---  221 (342)
Q Consensus       146 ~~~v~~~s~~~~~~~~~s~d~~-v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~---  221 (342)
                      ......++++++.|+.++.|.+ +++|++.......     ........+.+.+.|.      .+..+.+++||+..   
T Consensus       172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~-----~~~~~~~~~~yp~~G~------~~~~~~l~v~d~~~~~~  240 (740)
T 4a5s_A          172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES-----LQYPKTVRVPYPKAGA------VNPTVKFFVVNTDSLSS  240 (740)
T ss_dssp             SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT-----CSSCEEEEEECCBTTS------CCCEEEEEEEETTSCCS
T ss_pred             CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC-----CCCCcceeecCCCCcC------cCCeeEEEEEECCCCCC
Confidence            1122568888889998877655 8888874322110     0111233444444442      35566788899865   


Q ss_pred             hhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEe----cCCCeEEEEeCCCce----eee--cc--CCCCcceE
Q 019384          222 ASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATG----GCDGFVNVWDGNNKK----RLY--QY--SKYPTSIA  289 (342)
Q Consensus       222 ~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sg----s~Dg~I~iWd~~~~~----~~~--~~--~~~~~~V~  289 (342)
                      ........+.....   ...+..-+..++|+|||+.++..    +.+..|++||..+++    +..  ++  .+|...|.
T Consensus       241 ~~~~~~~~l~~~~~---~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~  317 (740)
T 4a5s_A          241 VTNATSIQITAPAS---MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVG  317 (740)
T ss_dssp             SSCCCEEEECCCHH---HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSS
T ss_pred             CCcceEEEecCCcc---CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEc
Confidence            31101111111000   00012347889999999966654    334589999998876    332  22  45665554


Q ss_pred             -----EEEECCCCCEEE-EEEe
Q 019384          290 -----ALSFSRDGRLLA-VASS  305 (342)
Q Consensus       290 -----~v~~spdg~~la-s~s~  305 (342)
                           .++|||||+.|+ ..+.
T Consensus       318 ~~~~~~p~fspDG~~l~~~~s~  339 (740)
T 4a5s_A          318 RFRPSEPHFTLDGNSFYKIISN  339 (740)
T ss_dssp             SSSCCCCEECTTSSEEEEEEEC
T ss_pred             cCcCCCceEcCCCCEEEEEEEc
Confidence                 789999999887 5553

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=4.2e-18  Score=167.95  Aligned_cols=267  Identities=12%  Similarity=0.005  Sum_probs=174.8

Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCC----ceEEEEEeCCCCeE-EEec---------CCcEEEEEe
Q 019384           23 SNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGG----PVLDCCFHDDSSGF-SASA---------DHTVRRLVF   88 (342)
Q Consensus        23 ~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~----~V~~~~~~~~~~~~-s~s~---------D~~i~~w~~   88 (342)
                      .+++|+|++++++ .+.|++|++||+.+++......+..    .+.+++|+|+++.+ +++.         |+.+++|++
T Consensus        19 ~~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           19 FFPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            4789999995544 5579999999999887666554433    38999999888754 5554         689999999


Q ss_pred             ccCce---eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCC-----------------CCc
Q 019384           89 SHGKE---DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ-----------------PER  148 (342)
Q Consensus        89 ~~~~~---~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~-----------------~~~  148 (342)
                      .+++.   ..+   ...+.+++|+|||+.|+.++ |+.|++||+.++... +........                 ...
T Consensus        98 ~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~-~l~~~~~~~~v~~g~~~~v~~ee~~~~~~  172 (719)
T 1z68_A           98 SNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF-QITFNGRENKIFNGIPDWVYEEEMLATKY  172 (719)
T ss_dssp             TTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE-ECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred             CCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE-EEecCCCcCCeEcccccceeeeecccCcc
Confidence            88775   333   35688999999999999885 789999998754321 111011000                 012


Q ss_pred             EEEEeccCCeEEEEEcCC----------------------------------eEEEEeCCCCCCc-cccc-----ccccc
Q 019384          149 VYSLSLVGNRLVVATAGR----------------------------------HVNVYDLRNMSQP-EQRR-----ESSLK  188 (342)
Q Consensus       149 v~~~s~~~~~~~~~s~d~----------------------------------~v~iwd~~~~~~~-~~~~-----~~~~~  188 (342)
                      ...++++++.|++++.|.                                  +|++||+.++... ....     .....
T Consensus       173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  252 (719)
T 1z68_A          173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD  252 (719)
T ss_dssp             CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred             cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence            457888888999887652                                  7889999765321 0000     01123


Q ss_pred             eeeEEEEEeeCCceEEEEc--cCCeEEEEEee----chhhhhcccce--eeeEEecCCCCceeeeee-----EEEEcCCC
Q 019384          189 YQTRCVRCYPNGTGYALSS--VEGRVAMEFFD----LSEASQAKKYA--FKCHRKSEAGRDIVYPVN-----AIAFHPIY  255 (342)
Q Consensus       189 ~~~~~v~~~~~~~~~~~~s--~~~~~~i~~~d----~~~~~~~~~~~--~~~h~~~~~~~~~~~~v~-----~v~~sp~~  255 (342)
                      ..+..++|+|+++.+++..  .++...|++||    ...........  ...|..         .+.     .++|+|||
T Consensus       253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~~~spdg  323 (719)
T 1z68_A          253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG---------WAGGFFVSTPVFSYDA  323 (719)
T ss_dssp             EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS---------CSSSSSCCCCEECTTS
T ss_pred             ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc---------eEccccCCccEECCCC
Confidence            4567889999977665533  34556788899    54332211110  011211         233     67899999


Q ss_pred             CeEEE--ecCCC--eEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          256 GTFAT--GGCDG--FVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       256 ~~l~s--gs~Dg--~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      +.|+.  +..+|  .|++||..+++ ...+..+...|..+.++ |++.|+..+..
T Consensus       324 ~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~  376 (719)
T 1z68_A          324 ISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNE  376 (719)
T ss_dssp             SCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred             CeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence            96543  54555  57777877655 45566666678888888 88887776644

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.80  E-value=9.2e-18  Score=150.79  Aligned_cols=247  Identities=9%  Similarity=0.065  Sum_probs=153.0

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeC---CCcEEEEECCCcee--eee-eecCCceEEEEEeCCCC-eEEEe-cCCcEEEEEec
Q 019384           18 PSDGISNLRFSNHSDHLLVSSW---DKSVRLYDASANVL--RGE-FMHGGPVLDCCFHDDSS-GFSAS-ADHTVRRLVFS   89 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~---Dgti~vwd~~~~~~--~~~-~~h~~~V~~~~~~~~~~-~~s~s-~D~~i~~w~~~   89 (342)
                      +...+..++|+|||+ |++++.   ++.|++||+.++..  ... ..+...+..++|+++++ +++++ .++.+++|++.
T Consensus        38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence            345677899999999 555544   69999999976653  222 45777889999998877 55666 67899999996


Q ss_pred             c-Cceee---cc--c-------CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceee--eeecCC-CCcEEEEe
Q 019384           90 H-GKEDI---LG--K-------HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTL--VGTYPQ-PERVYSLS  153 (342)
Q Consensus        90 ~-~~~~~---~~--~-------h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~--~~~~~~-~~~v~~~s  153 (342)
                      . +....   +.  +       +...+.+++|+|+++.+++...++.|++||+... +.....  ...... ....+.++
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~-g~~~~~~~~~~~~g~~p~~~~~s  195 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA-GQLSEQSVLTMEAGFGPRHLVFS  195 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT-SCEEEEEEEECCTTCCEEEEEEC
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC-CcEEEeeeEEcCCCCCCceEEEC
Confidence            3 22211   11  1       2235889999999996677777899999998732 211111  111111 11234566


Q ss_pred             ccCCeEEE-EEcCCeEEEEeCCC--CCCcccccccccc------eeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhh
Q 019384          154 LVGNRLVV-ATAGRHVNVYDLRN--MSQPEQRRESSLK------YQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEAS  223 (342)
Q Consensus       154 ~~~~~~~~-~s~d~~v~iwd~~~--~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~  223 (342)
                      .+++.+++ ...++.|.+|++..  +............      .....++++|+|+.++++ ..++.+  .+|++....
T Consensus       196 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v--~v~~~~~~g  273 (347)
T 3hfq_A          196 PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTL--AVFAVTADG  273 (347)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEE--EEEEECGGG
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEE--EEEEECCCC
Confidence            67775555 45678999999874  2111000000011      236678999999977554 446655  457774321


Q ss_pred             hcc-cceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecC-CCeEEEE--eCCCcee
Q 019384          224 QAK-KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGC-DGFVNVW--DGNNKKR  277 (342)
Q Consensus       224 ~~~-~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~-Dg~I~iW--d~~~~~~  277 (342)
                      ... ...+..+         ...+..++|+|+|++|++++. ++.|.+|  |.++++.
T Consensus       274 ~~~~~~~~~~~---------~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          274 HLTLIQQISTE---------GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             CEEEEEEEECS---------SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             cEEEeEEEecC---------CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence            111 1111111         013678999999998877765 5899999  4455543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.80  E-value=3.4e-18  Score=158.92  Aligned_cols=199  Identities=13%  Similarity=0.063  Sum_probs=137.3

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC-----------cee-----eeeeecCCceEEEEEeCCCCe-E----E
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA-----------NVL-----RGEFMHGGPVLDCCFHDDSSG-F----S   76 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~-----------~~~-----~~~~~h~~~V~~~~~~~~~~~-~----s   76 (342)
                      +...++.+++++++.+|++++.|+ ++||+...           ...     .....+.+.|.+++|++++.. +    +
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            455789999999999999999998 99988521           011     122346678999999987765 4    5


Q ss_pred             EecCCcEEEEEeccC--------c----eeecccCCcceeEEEEeCC-CCEEEEeeCCCcEEEEcCCCCCCcceeeeeec
Q 019384           77 ASADHTVRRLVFSHG--------K----EDILGKHDAPVRCIEYSYA-AGQVITGSWDKSLKCWDPRGASGQERTLVGTY  143 (342)
Q Consensus        77 ~s~D~~i~~w~~~~~--------~----~~~~~~h~~~V~~~~~~~~-~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~  143 (342)
                      ++.|+.|++||+.+.        +    ...+.+|...|.+++|+|+ +.+|++++.|++|++||+++...    .....
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~----~~~~~  189 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK----VCATL  189 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE----EEEEE
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc----eeecc
Confidence            678999999998764        1    2345679999999999997 78999999999999999975421    11111


Q ss_pred             CCCCcEE--EEeccCCeEEEEEcCCeEEEEeCCCCCCccccccc-----ccceeeEEEEEeeCCceEEEEc-cCCeE---
Q 019384          144 PQPERVY--SLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRES-----SLKYQTRCVRCYPNGTGYALSS-VEGRV---  212 (342)
Q Consensus       144 ~~~~~v~--~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~s-~~~~~---  212 (342)
                      .+...+.  +++.+++.+++++.|++|++||++ +........+     .....+.++.|++++..+++.+ .++++   
T Consensus       190 ~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~  268 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETS  268 (434)
T ss_dssp             CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSC
T ss_pred             CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCC
Confidence            2223344  455567799999999999999998 2211111100     1123678889999877664433 33221   


Q ss_pred             -EEEEeechhh
Q 019384          213 -AMEFFDLSEA  222 (342)
Q Consensus       213 -~i~~~d~~~~  222 (342)
                       .+++|++...
T Consensus       269 ~~v~i~~l~~~  279 (434)
T 2oit_A          269 PDVVMALLPKK  279 (434)
T ss_dssp             CEEEEEECCCT
T ss_pred             CceEEEEeccC
Confidence             2567887543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.79  E-value=6.4e-18  Score=166.65  Aligned_cols=272  Identities=11%  Similarity=0.024  Sum_probs=169.0

Q ss_pred             CeEEEEEcCCCCeEEEEeC---------CCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccC
Q 019384           21 GISNLRFSNHSDHLLVSSW---------DKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHG   91 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~---------Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~   91 (342)
                      .|.+++|||||++||+++.         |++|++||+.+++........+.+..++|+|+++.+..+.|+.|++|++.++
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g  140 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGD  140 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTS
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCC
Confidence            4899999999999998876         7999999999887621111235688999999988766667899999999877


Q ss_pred             ceeec--ccCCcce-----------------eEEEEeCCCCEEEEeeCCC------------------------------
Q 019384           92 KEDIL--GKHDAPV-----------------RCIEYSYAAGQVITGSWDK------------------------------  122 (342)
Q Consensus        92 ~~~~~--~~h~~~V-----------------~~~~~~~~~~~l~sgs~D~------------------------------  122 (342)
                      ....+  .++...|                 .+++|+|||+.|++++.|.                              
T Consensus       141 ~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~  220 (719)
T 1z68_A          141 PPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAK  220 (719)
T ss_dssp             CCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSC
T ss_pred             CcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCC
Confidence            64332  2333322                 4899999999999988663                              


Q ss_pred             ----cEEEEcCCCCCCcceeeeee----cCCCCcEEE--EeccCCeEEEEEcCC----eEEEEe----CCCCCCccccc-
Q 019384          123 ----SLKCWDPRGASGQERTLVGT----YPQPERVYS--LSLVGNRLVVATAGR----HVNVYD----LRNMSQPEQRR-  183 (342)
Q Consensus       123 ----~I~iWd~~~~~~~~~~~~~~----~~~~~~v~~--~s~~~~~~~~~s~d~----~v~iwd----~~~~~~~~~~~-  183 (342)
                          +|++||+.++.......+..    ..+...+..  +++++..+++....+    .|.+||    +.+++...... 
T Consensus       221 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~  300 (719)
T 1z68_A          221 NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEH  300 (719)
T ss_dssp             CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEE
T ss_pred             CCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEec
Confidence                78899986532100001100    012223334  455543444433322    488899    76543221110 


Q ss_pred             -ccccceeeE-----EEEEeeCCceEEE--EccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC
Q 019384          184 -ESSLKYQTR-----CVRCYPNGTGYAL--SSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY  255 (342)
Q Consensus       184 -~~~~~~~~~-----~v~~~~~~~~~~~--~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~  255 (342)
                       .......+.     .+.|+|+|+.++.  ...++...|++||..... .  ..+..+.         ..+..+.++ ++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~--~~lt~~~---------~~v~~~~~~-d~  367 (719)
T 1z68_A          301 IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-A--IQITSGK---------WEAINIFRV-TQ  367 (719)
T ss_dssp             EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-C--EECSCSS---------SCEEEEEEE-CS
T ss_pred             ccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-e--EecccCc---------eEEEEEEEE-eC
Confidence             011111222     5779999986654  456777788889875432 1  1111110         125566666 77


Q ss_pred             CeEEEecC-----CCeEEEEeCCC--c----eeee-ccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          256 GTFATGGC-----DGFVNVWDGNN--K----KRLY-QYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       256 ~~l~sgs~-----Dg~I~iWd~~~--~----~~~~-~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                      +.|+..+.     +++++||.+..  +    +++. .+.+|...+..++|||||++|+..++
T Consensus       368 ~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s  429 (719)
T 1z68_A          368 DSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCY  429 (719)
T ss_dssp             SEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEEC
T ss_pred             CEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcC
Confidence            76655544     48899997653  3    2221 13336677899999999998886543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=1.5e-16  Score=143.72  Aligned_cols=285  Identities=10%  Similarity=0.042  Sum_probs=170.0

Q ss_pred             cCCCCeEEEEe----CCCcEEEEECC--Cceee--eeeecCCceEEEEEeCCCC-eEEEecC----CcEEEEEeccC--c
Q 019384           28 SNHSDHLLVSS----WDKSVRLYDAS--ANVLR--GEFMHGGPVLDCCFHDDSS-GFSASAD----HTVRRLVFSHG--K   92 (342)
Q Consensus        28 s~~~~~l~s~s----~Dgti~vwd~~--~~~~~--~~~~h~~~V~~~~~~~~~~-~~s~s~D----~~i~~w~~~~~--~   92 (342)
                      .++..+++.|+    .++.|.+|++.  ++++.  ... +...+..++|+++++ +++++.+    +.+.+|++...  .
T Consensus        10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~   88 (361)
T 3scy_A           10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT   88 (361)
T ss_dssp             GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred             CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence            33445666664    45789999873  44432  233 677788899998877 5566665    78999998763  3


Q ss_pred             eee---cccCCcceeEEEEeCCCCEEEEee-CCCcEEEEcCCCCCCccee-eeeecCC-----------CCcEEEEeccC
Q 019384           93 EDI---LGKHDAPVRCIEYSYAAGQVITGS-WDKSLKCWDPRGASGQERT-LVGTYPQ-----------PERVYSLSLVG  156 (342)
Q Consensus        93 ~~~---~~~h~~~V~~~~~~~~~~~l~sgs-~D~~I~iWd~~~~~~~~~~-~~~~~~~-----------~~~v~~~s~~~  156 (342)
                      ...   ...+......+++  +++.|++++ .+++|.+|++......... ....+..           ....+.+++++
T Consensus        89 ~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg  166 (361)
T 3scy_A           89 LHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG  166 (361)
T ss_dssp             EEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred             EEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence            222   2234556777777  777776655 6789999998643211100 0001111           01224566777


Q ss_pred             CeEEEEE-cCCeEEEEeCCCCCC------cc-----cccccccceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhh
Q 019384          157 NRLVVAT-AGRHVNVYDLRNMSQ------PE-----QRRESSLKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEAS  223 (342)
Q Consensus       157 ~~~~~~s-~d~~v~iwd~~~~~~------~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~  223 (342)
                      +.++++. .++.|.+|++.....      ..     .............++++|+++.++++. .++.+  .+|+.....
T Consensus       167 ~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v--~v~~~~~g~  244 (361)
T 3scy_A          167 KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV--IAFRYADGM  244 (361)
T ss_dssp             SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE--EEEEEETTE
T ss_pred             CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE--EEEEecCCc
Confidence            7665554 478999999875431      10     011112223456789999999776665 46655  568775321


Q ss_pred             hcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecC--CCeEEEEeCC--Cce--eeeccCCCCcceEEEEECCCC
Q 019384          224 QAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGC--DGFVNVWDGN--NKK--RLYQYSKYPTSIAALSFSRDG  297 (342)
Q Consensus       224 ~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~--Dg~I~iWd~~--~~~--~~~~~~~~~~~V~~v~~spdg  297 (342)
                      ......+....      ........++|+|||++|+++..  +++|.+|++.  +++  .+..+.. ...+.+++|+|||
T Consensus       245 ~~~~~~~~~~~------~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg  317 (361)
T 3scy_A          245 LDEIQTVAADT------VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNG  317 (361)
T ss_dssp             EEEEEEEESCS------SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTS
T ss_pred             eEEeEEEecCC------CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCC
Confidence            11111111100      01113568999999998865554  5899999985  333  3444443 4567899999999


Q ss_pred             CEEEEEEeccccCCCCCCCCCcEEEEEcc--CCccccCC
Q 019384          298 RLLAVASSYTFEEGDKPHEPDAIFVRSVN--EIEVKPKP  334 (342)
Q Consensus       298 ~~las~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  334 (342)
                      ++|++++...          +.|.+|.++  .+..+...
T Consensus       318 ~~l~~~~~~~----------~~v~v~~~d~~~g~~~~~~  346 (361)
T 3scy_A          318 KYLLVACRDT----------NVIQIFERDQATGLLTDIK  346 (361)
T ss_dssp             CEEEEEETTT----------TEEEEEEECTTTCCEEECS
T ss_pred             CEEEEEECCC----------CCEEEEEEECCCCcEeecc
Confidence            9999887532          147776554  34444443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.77  E-value=7.2e-18  Score=156.66  Aligned_cols=156  Identities=17%  Similarity=0.155  Sum_probs=116.3

Q ss_pred             CCCCeEEEEEcCCCCeEE----EEeCCCcEEEEECCCc--------e----eeeeeecCCceEEEEEeCC-CC-eEEEec
Q 019384           18 PSDGISNLRFSNHSDHLL----VSSWDKSVRLYDASAN--------V----LRGEFMHGGPVLDCCFHDD-SS-GFSASA   79 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~----s~s~Dgti~vwd~~~~--------~----~~~~~~h~~~V~~~~~~~~-~~-~~s~s~   79 (342)
                      +...|++++|+|++++||    +|+.|++|+|||+.+.        +    +....+|.+.|.+++|+++ +. +++++.
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            456799999999999999    8999999999998543        1    2223458999999999975 44 568999


Q ss_pred             CCcEEEEEeccCcee-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeec-----CCCCcEEEEe
Q 019384           80 DHTVRRLVFSHGKED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTY-----PQPERVYSLS  153 (342)
Q Consensus        80 D~~i~~w~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~-----~~~~~v~~~s  153 (342)
                      |++|++||+.++... ...+|...|.+++|+|++++|++|+.|++|++||++ ...  ...+..+     .+...+.++.
T Consensus       171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~--~~~~~~~~~~~~~~~~~v~~v~  247 (434)
T 2oit_A          171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE--KKVIPCPPFYESDHPVRVLDVL  247 (434)
T ss_dssp             TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE--EEEECCCTTCCTTSCEEEEEEE
T ss_pred             CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc--cccccCCcccCCCCceeEEEEE
Confidence            999999999887532 345789999999999999999999999999999987 221  1112111     1123677777


Q ss_pred             ccCC-eEEE--EEcCC------eEEEEeCCCC
Q 019384          154 LVGN-RLVV--ATAGR------HVNVYDLRNM  176 (342)
Q Consensus       154 ~~~~-~~~~--~s~d~------~v~iwd~~~~  176 (342)
                      ++++ .++.  .+.+|      .+++||+++.
T Consensus       248 w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          248 WIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            7655 2332  33333      3899999864

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.77  E-value=2.5e-17  Score=158.57  Aligned_cols=226  Identities=13%  Similarity=0.073  Sum_probs=155.3

Q ss_pred             cCCceEEEEEeCCCC-eEEEec-CCcEEEEEeccCceeecccCC-cceeEEEEeCCCCEEEEeeC---CCcEEEEcCCC-
Q 019384           59 HGGPVLDCCFHDDSS-GFSASA-DHTVRRLVFSHGKEDILGKHD-APVRCIEYSYAAGQVITGSW---DKSLKCWDPRG-  131 (342)
Q Consensus        59 h~~~V~~~~~~~~~~-~~s~s~-D~~i~~w~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~sgs~---D~~I~iWd~~~-  131 (342)
                      +..+|++++|++|++ +++++. |+++++|+++++....+..|. ..|.+++|+|| +.+++++.   +...++|.+.. 
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            356899999997766 456665 999999999777766666655 68999999998 67777765   55567765432 


Q ss_pred             -CCCcceeeeeecCCCCcEEEEeccCCeE-EEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC
Q 019384          132 -ASGQERTLVGTYPQPERVYSLSLVGNRL-VVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE  209 (342)
Q Consensus       132 -~~~~~~~~~~~~~~~~~v~~~s~~~~~~-~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~  209 (342)
                       .... . .+... ....+.+++++++.+ ++...++.+.+||+.+++.. ....    ....+++++|+|+.++.++.+
T Consensus        99 ~~g~~-~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~-~l~~----~~~~~~~~spDG~~la~~~~~  170 (582)
T 3o4h_A           99 RPGEE-Q-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR-ELAR----LPGFGFVSDIRGDLIAGLGFF  170 (582)
T ss_dssp             STTCC-E-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE-EEEE----ESSCEEEEEEETTEEEEEEEE
T ss_pred             CCCcc-c-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE-Eeec----CCCceEEECCCCCEEEEEEEc
Confidence             2221 1 12111 123466788888753 33344455669999775321 1111    112678899999999877654


Q ss_pred             --CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCC--eEEEEeCCCceeeeccCCCC
Q 019384          210 --GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDG--FVNVWDGNNKKRLYQYSKYP  285 (342)
Q Consensus       210 --~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg--~I~iWd~~~~~~~~~~~~~~  285 (342)
                        +...|++||..+....   .+..|.         ..+..++|||||++|+++..|+  +|++||.++++.. .+.+|.
T Consensus       171 ~~~~~~i~~~d~~~g~~~---~l~~~~---------~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~  237 (582)
T 3o4h_A          171 GGGRVSLFTSNLSSGGLR---VFDSGE---------GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS  237 (582)
T ss_dssp             ETTEEEEEEEETTTCCCE---EECCSS---------CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC
T ss_pred             CCCCeEEEEEcCCCCCce---EeecCC---------CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC
Confidence              3356788997543221   222221         2578899999999999888898  8999999988776 777888


Q ss_pred             cceEEEE--------ECCCCCEEEEEEec
Q 019384          286 TSIAALS--------FSRDGRLLAVASSY  306 (342)
Q Consensus       286 ~~V~~v~--------~spdg~~las~s~~  306 (342)
                      ..+..++        |||||+++++++.+
T Consensus       238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~  266 (582)
T 3o4h_A          238 KDFSSYRPTAITWLGYLPDGRLAVVARRE  266 (582)
T ss_dssp             SHHHHHCCSEEEEEEECTTSCEEEEEEET
T ss_pred             cChhhhhhccccceeEcCCCcEEEEEEcC
Confidence            7788788        99999877777654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.74  E-value=4.9e-16  Score=151.69  Aligned_cols=277  Identities=10%  Similarity=-0.065  Sum_probs=174.2

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEE--eCCCcEEEEEC-CCceeeeeeecCCceE---------EEEEe--CCCCe-EEEecC
Q 019384           16 NPPSDGISNLRFSNHSDHLLVS--SWDKSVRLYDA-SANVLRGEFMHGGPVL---------DCCFH--DDSSG-FSASAD   80 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~--s~Dgti~vwd~-~~~~~~~~~~h~~~V~---------~~~~~--~~~~~-~s~s~D   80 (342)
                      ..|...|.+++|+++.-.+++.  +.|++.+||.. .++..+....|...+.         ...|+  |+++. +..+.+
T Consensus        20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~   99 (662)
T 3azo_A           20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF   99 (662)
T ss_dssp             HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred             hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence            3577899999999887777777  66899999995 3444555555665555         56565  77766 655555


Q ss_pred             CcEEEEEecc-----Cceeeccc-----CCcceeEEEEeCCCCEEEEeeCC----------CcEEEEcCCCCC----Ccc
Q 019384           81 HTVRRLVFSH-----GKEDILGK-----HDAPVRCIEYSYAAGQVITGSWD----------KSLKCWDPRGAS----GQE  136 (342)
Q Consensus        81 ~~i~~w~~~~-----~~~~~~~~-----h~~~V~~~~~~~~~~~l~sgs~D----------~~I~iWd~~~~~----~~~  136 (342)
                      ...++|.++.     +....+..     |...+.+++|+|||+.|+.++.|          ..|.+||+.+..    +..
T Consensus       100 ~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  179 (662)
T 3azo_A          100 GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV  179 (662)
T ss_dssp             TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS
T ss_pred             CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce
Confidence            4555555543     34444544     67789999999999999988877          589999987510    111


Q ss_pred             eeeee-ecCCCCcEEEEeccCCeEEEEEcCC--------eEEEEeCC-CCCC-cccccccccceeeEEEEEeeCCceEEE
Q 019384          137 RTLVG-TYPQPERVYSLSLVGNRLVVATAGR--------HVNVYDLR-NMSQ-PEQRRESSLKYQTRCVRCYPNGTGYAL  205 (342)
Q Consensus       137 ~~~~~-~~~~~~~v~~~s~~~~~~~~~s~d~--------~v~iwd~~-~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~  205 (342)
                      . .+. ..........++++++.|+.++.++        +|.+||+. ++.. ...............+.|+|+|+.+++
T Consensus       180 ~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~  258 (662)
T 3azo_A          180 R-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVA  258 (662)
T ss_dssp             E-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEE
T ss_pred             e-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEE
Confidence            1 121 1111111235777888888877553        79999998 4411 111111112235677889999997777


Q ss_pred             EccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEE--eCCCceeeeccCC
Q 019384          206 SSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVW--DGNNKKRLYQYSK  283 (342)
Q Consensus       206 ~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iW--d~~~~~~~~~~~~  283 (342)
                      +..++...|+.||.........  ...+.... ...-...+..++|+|++.++++++. ++++||  |..+++ +..+..
T Consensus       259 ~~~~~~~~l~~~~~~~~~~~~l--~~~~~~~~-~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~  333 (662)
T 3azo_A          259 TDRTGWWNLHRVDPATGAATQL--CRREEEFA-GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAG  333 (662)
T ss_dssp             ECTTSSCEEEEECTTTCCEEES--SCCSSBSS-CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCS
T ss_pred             ECCCCCeEEEEEECCCCceeec--cccccccc-CccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecC
Confidence            7777777788888643221111  11111100 0000001457899999999999998 999999  555554 667777


Q ss_pred             CCcceEEEEECCCCCE
Q 019384          284 YPTSIAALSFSRDGRL  299 (342)
Q Consensus       284 ~~~~V~~v~~spdg~~  299 (342)
                      +...+..+. ++|+..
T Consensus       334 ~~~~~~~~~-s~~~~~  348 (662)
T 3azo_A          334 PWTEWAATL-TVSGTR  348 (662)
T ss_dssp             SCCEEEEEE-EEETTE
T ss_pred             CCCeEEEEE-ecCCCE
Confidence            777787771 445543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.73  E-value=3e-16  Score=142.91  Aligned_cols=267  Identities=10%  Similarity=0.017  Sum_probs=162.5

Q ss_pred             CeEEEEEcCCCCeEEEEeCC---CcEEEEECCCceeeeeeecCCceE-EEEEeCCCCe-EEEecCCcEEEEEeccCceee
Q 019384           21 GISNLRFSNHSDHLLVSSWD---KSVRLYDASANVLRGEFMHGGPVL-DCCFHDDSSG-FSASADHTVRRLVFSHGKEDI   95 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~D---gti~vwd~~~~~~~~~~~h~~~V~-~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~~~   95 (342)
                      .+.+++|||||++|+..+.+   ..|.+||+.+++......+...+. .+.|+|+++. +.++.++.+.+|++.+++...
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV  116 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence            37889999999998876543   468888998877655444444433 3788988765 477788889999998876443


Q ss_pred             c-ccCCcceeE-------------------EEEeCCCCEEEEe-----eCCCcEEEEcCCCCCCcceeeeeecCCCCcEE
Q 019384           96 L-GKHDAPVRC-------------------IEYSYAAGQVITG-----SWDKSLKCWDPRGASGQERTLVGTYPQPERVY  150 (342)
Q Consensus        96 ~-~~h~~~V~~-------------------~~~~~~~~~l~sg-----s~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~  150 (342)
                      + ..+......                   ++|+|+++.++..     ..+..|.+||+.++..  .. +..........
T Consensus       117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~-~~~~~~~~~~~  193 (396)
T 3c5m_A          117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL--EV-IHQDTAWLGHP  193 (396)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE--EE-EEEESSCEEEE
T ss_pred             EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE--Ee-eccCCcccccc
Confidence            3 323322212                   3456666665543     4566899999875432  12 22222222233


Q ss_pred             EEec-cCCeEEEEEcC------CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC-Ce--EEEEEeech
Q 019384          151 SLSL-VGNRLVVATAG------RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE-GR--VAMEFFDLS  220 (342)
Q Consensus       151 ~~s~-~~~~~~~~s~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~-~~--~~i~~~d~~  220 (342)
                      .++. ++..++.++.+      ..|.+||+...... ..........+..+.++|+++.++..+.+ +.  ..+++||..
T Consensus       194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  272 (396)
T 3c5m_A          194 IYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE  272 (396)
T ss_dssp             EEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT
T ss_pred             eECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC
Confidence            4555 45566666544      35888888654321 11111112345678899999987766432 22  347789985


Q ss_pred             hhhhcccceeeeEEecCCCCceeeeeeEEEEcC-CCCeEEEec----------------CCCeEEEEeCCCceeeeccCC
Q 019384          221 EASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP-IYGTFATGG----------------CDGFVNVWDGNNKKRLYQYSK  283 (342)
Q Consensus       221 ~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp-~~~~l~sgs----------------~Dg~I~iWd~~~~~~~~~~~~  283 (342)
                      ......   +... .         ... ++|+| +|++|++++                .+..|++||..+++. ..+..
T Consensus       273 ~g~~~~---l~~~-~---------~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~  337 (396)
T 3c5m_A          273 TLENEE---VMVM-P---------PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCK  337 (396)
T ss_dssp             TCCEEE---EEEC-C---------SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEE
T ss_pred             CCCeEE---eeeC-C---------CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccC
Confidence            432111   1100 0         122 78999 999888754                347899999987653 33333


Q ss_pred             CCc-----------ceEEEEECCCCCEEEEEEec
Q 019384          284 YPT-----------SIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       284 ~~~-----------~V~~v~~spdg~~las~s~~  306 (342)
                      +..           .+..++|+|||++|+.++..
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~  371 (396)
T 3c5m_A          338 HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF  371 (396)
T ss_dssp             CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred             CCCccccccccccCCCCCceEccCCCeEEEEecC
Confidence            433           25678999999999887753

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.73  E-value=2.2e-16  Score=143.24  Aligned_cols=248  Identities=11%  Similarity=0.042  Sum_probs=152.8

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCCcEEEEECC-CceeeeeeecC--CceEEEEEeCCCC--eE-EEe-------------cC
Q 019384           20 DGISNLRFSNHSDHLLVSSWDKSVRLYDAS-ANVLRGEFMHG--GPVLDCCFHDDSS--GF-SAS-------------AD   80 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~-~~~~~~~~~h~--~~V~~~~~~~~~~--~~-s~s-------------~D   80 (342)
                      ..+..++|+|++++|++++.+ +|++||+. ++++.....+.  +.+..++|+++++  ++ ++.             .+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            468899999999999999988 99999986 66654333322  3455688888887  23 442             58


Q ss_pred             CcEEEEEecc-Ccee-ecc----cCCcceeEEEEeCCCCEEEEee-CCCcEEEEcCC-CCCCcceeeeeec--CCCCcEE
Q 019384           81 HTVRRLVFSH-GKED-ILG----KHDAPVRCIEYSYAAGQVITGS-WDKSLKCWDPR-GASGQERTLVGTY--PQPERVY  150 (342)
Q Consensus        81 ~~i~~w~~~~-~~~~-~~~----~h~~~V~~~~~~~~~~~l~sgs-~D~~I~iWd~~-~~~~~~~~~~~~~--~~~~~v~  150 (342)
                      +.+.+|++.. ++.. .+.    .+...+.+++|+|++++|+++. .++.|++||++ ++.......+...  ......+
T Consensus       119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~  198 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV  198 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred             ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEe
Confidence            8999999974 4322 222    3557799999999999887665 46899999986 3321111111100  1112234


Q ss_pred             EEeccCCeEEEEEc-CCeEEEEeCC--CCCCcc--c-ccccc--cc--e-------eeEEEE-EeeCCceEEEEccCCe-
Q 019384          151 SLSLVGNRLVVATA-GRHVNVYDLR--NMSQPE--Q-RRESS--LK--Y-------QTRCVR-CYPNGTGYALSSVEGR-  211 (342)
Q Consensus       151 ~~s~~~~~~~~~s~-d~~v~iwd~~--~~~~~~--~-~~~~~--~~--~-------~~~~v~-~~~~~~~~~~~s~~~~-  211 (342)
                      .++.+++.++++.. +++|.+|++.  +++...  . ....+  ..  .       ....++ ++|+|+.++++..+.. 
T Consensus       199 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~  278 (365)
T 1jof_A          199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF  278 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST
T ss_pred             EECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC
Confidence            56666777777664 6789999865  332110  0 00011  11  1       367788 9999998877654331 


Q ss_pred             ---EEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcC---CCCeEEEecCC-CeEEEEeCCCc
Q 019384          212 ---VAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP---IYGTFATGGCD-GFVNVWDGNNK  275 (342)
Q Consensus       212 ---~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp---~~~~l~sgs~D-g~I~iWd~~~~  275 (342)
                         -.+.+|++....... . +.......     ...+..++|+|   +|++|++++.+ ++|++|+++..
T Consensus       279 ~~~~~i~v~~~~~~g~~~-~-~~~~~~~~-----~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          279 ELQGYIAGFKLRDCGSIE-K-QLFLSPTP-----TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TSCCEEEEEEECTTSCEE-E-EEEEEECS-----SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCeEEEEEECCCCCEE-E-eeeeeecC-----CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence               034568774211111 0 00000000     01256789999   89999988764 89999998754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.71  E-value=2.6e-15  Score=136.06  Aligned_cols=269  Identities=9%  Similarity=0.005  Sum_probs=155.8

Q ss_pred             eEEEEeCC--CcEEEEEC--CCceeeee--e--ecCCceEEEEEeCCCC-eEEEecCCcEEEEEec-cCceeecccCC--
Q 019384           33 HLLVSSWD--KSVRLYDA--SANVLRGE--F--MHGGPVLDCCFHDDSS-GFSASADHTVRRLVFS-HGKEDILGKHD--  100 (342)
Q Consensus        33 ~l~s~s~D--gti~vwd~--~~~~~~~~--~--~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~-~~~~~~~~~h~--  100 (342)
                      +|+.|++.  +.|.+|++  .++.+...  .  .....+..++|+++++ +++++.+ .+.+|++. +++...+..+.  
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~   82 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence            45566653  56887765  44544322  1  1334678899998887 5677777 99999987 55533222111  


Q ss_pred             cceeEEEEeCCCCE--EEEee-------------CCCcEEEEcCCCCCCcceeeeeec--CCCCc--EEEEeccCCeEEE
Q 019384          101 APVRCIEYSYAAGQ--VITGS-------------WDKSLKCWDPRGASGQERTLVGTY--PQPER--VYSLSLVGNRLVV  161 (342)
Q Consensus       101 ~~V~~~~~~~~~~~--l~sgs-------------~D~~I~iWd~~~~~~~~~~~~~~~--~~~~~--v~~~s~~~~~~~~  161 (342)
                      +.+.+++|+|++++  ++++.             .++++++|++..... ....+...  .....  ...++++++.+++
T Consensus        83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~spdG~~l~~  161 (365)
T 1jof_A           83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK-LEKNVQNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC-EEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc-CcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence            23566889999984  45553             689999999863211 11112211  11122  3446666777776


Q ss_pred             EEc-CCeEEEEeCC-CCCCccc-ccccc-cceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcc-cceeeeEEe
Q 019384          162 ATA-GRHVNVYDLR-NMSQPEQ-RRESS-LKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAK-KYAFKCHRK  235 (342)
Q Consensus       162 ~s~-d~~v~iwd~~-~~~~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~-~~~~~~h~~  235 (342)
                      +.. ++.|++||+. +++.... ..... ....+..++++|+++.+++++. ++.+.++.+|..+..... ...+..   
T Consensus       162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~---  238 (365)
T 1jof_A          162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL---  238 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES---
T ss_pred             EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc---
Confidence            553 5789999997 5432111 11101 1234678899999998877654 566655434432211100 000000   


Q ss_pred             cCCC-Cceee------eeeEEE-EcCCCCeEEEecCC-C-----eEEEEeCC-Cceeee---ccCCCCcceEEEEECC--
Q 019384          236 SEAG-RDIVY------PVNAIA-FHPIYGTFATGGCD-G-----FVNVWDGN-NKKRLY---QYSKYPTSIAALSFSR--  295 (342)
Q Consensus       236 ~~~~-~~~~~------~v~~v~-~sp~~~~l~sgs~D-g-----~I~iWd~~-~~~~~~---~~~~~~~~V~~v~~sp--  295 (342)
                      ...+ ..+..      .+..++ |+|||++|+++..+ .     +|.+|++. +++...   ....+...+..++|+|  
T Consensus       239 ~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~  318 (365)
T 1jof_A          239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCP  318 (365)
T ss_dssp             SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECT
T ss_pred             CCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCC
Confidence            0000 00010      367899 99999988766532 2     89999986 554332   1333445567899999  


Q ss_pred             -CCCEEEEEEec
Q 019384          296 -DGRLLAVASSY  306 (342)
Q Consensus       296 -dg~~las~s~~  306 (342)
                       ||++|++++..
T Consensus       319 ~dg~~l~v~~~~  330 (365)
T 1jof_A          319 WSDEWMAITDDQ  330 (365)
T ss_dssp             TCTTEEEEECSS
T ss_pred             cCCCEEEEEEcC
Confidence             89999988754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.71  E-value=3.8e-15  Score=133.42  Aligned_cols=226  Identities=13%  Similarity=0.067  Sum_probs=149.1

Q ss_pred             CCCeEEEEEcCCCCeEE-EEeCCCcEEEEECCCceeeeeeec-CC---------ceEEEEEeCCCC-eEEEe--cCCcEE
Q 019384           19 SDGISNLRFSNHSDHLL-VSSWDKSVRLYDASANVLRGEFMH-GG---------PVLDCCFHDDSS-GFSAS--ADHTVR   84 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~-s~s~Dgti~vwd~~~~~~~~~~~h-~~---------~V~~~~~~~~~~-~~s~s--~D~~i~   84 (342)
                      ...+..++|+|++++++ +...+++|.+||..+++....+.. .+         .+.++.|++++. ++.++  .++.|.
T Consensus        88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~  167 (353)
T 3vgz_A           88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW  167 (353)
T ss_dssp             SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred             CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence            34578899999999655 556689999999988776554432 21         268899998766 44444  478899


Q ss_pred             EEEeccCcee-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeee--cCCCCcE--EEEeccCCeE
Q 019384           85 RLVFSHGKED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGT--YPQPERV--YSLSLVGNRL  159 (342)
Q Consensus        85 ~w~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~--~~~~~~v--~~~s~~~~~~  159 (342)
                      +||..+++.. .+..+...+.+++|+|+++.|+.++.++.|.+||+.+....  ..+..  .......  +.++.+++.+
T Consensus       168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l  245 (353)
T 3vgz_A          168 VVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKIL--SRKKLLDDGKEHFFINISLDTARQRA  245 (353)
T ss_dssp             EEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEE--EEEECCCSSSCCCEEEEEEETTTTEE
T ss_pred             EEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEE--EEEEcCCCCCCcccceEEECCCCCEE
Confidence            9999887743 34446666889999999999999999999999998754321  11111  0111222  4566677766


Q ss_pred             EEEEcC-CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecC
Q 019384          160 VVATAG-RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSE  237 (342)
Q Consensus       160 ~~~s~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~  237 (342)
                      +++..+ +.|.+||+.+++......   .. ....++++|+++.++++. .++.+  .+||.........  +..     
T Consensus       246 ~~~~~~~~~v~~~d~~~~~~~~~~~---~~-~~~~~~~s~dg~~l~v~~~~~~~v--~~~d~~~~~~~~~--~~~-----  312 (353)
T 3vgz_A          246 FITDSKAAEVLVVDTRNGNILAKVA---AP-ESLAVLFNPARNEAYVTHRQAGKV--SVIDAKSYKVVKT--FDT-----  312 (353)
T ss_dssp             EEEESSSSEEEEEETTTCCEEEEEE---CS-SCCCEEEETTTTEEEEEETTTTEE--EEEETTTTEEEEE--EEC-----
T ss_pred             EEEeCCCCEEEEEECCCCcEEEEEE---cC-CCceEEECCCCCEEEEEECCCCeE--EEEECCCCeEEEE--Eec-----
Confidence            666554 899999998764322111   11 124578899998666554 56654  5688754322211  111     


Q ss_pred             CCCceeeeeeEEEEcCCCCeEEEecCC
Q 019384          238 AGRDIVYPVNAIAFHPIYGTFATGGCD  264 (342)
Q Consensus       238 ~~~~~~~~v~~v~~sp~~~~l~sgs~D  264 (342)
                           ...+.+++|+|+|++|+.+..+
T Consensus       313 -----~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          313 -----PTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             -----CSEEEEEEECTTSCEEEEEEEC
T ss_pred             -----CCCCCeEEEcCCCCEEEEEEcc
Confidence                 0146789999999977665544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.69  E-value=9.7e-15  Score=144.56  Aligned_cols=271  Identities=10%  Similarity=0.048  Sum_probs=163.1

Q ss_pred             EEEEEcCCCCeEEEEeCC---------CcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce
Q 019384           23 SNLRFSNHSDHLLVSSWD---------KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        23 ~~l~fs~~~~~l~s~s~D---------gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~   93 (342)
                      .+++|||||++|+.++.|         +.+.|||+.++++.....|.+.+....|+|+++.+.-+.|+.|.+|+..++..
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~  144 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPS  144 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCC
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCce
Confidence            458999999999999887         45569999998877766778889999999998877666789999999887764


Q ss_pred             eec--ccCCcce-----------------eEEEEeCCCCEEEEeeCCC--------------------------------
Q 019384           94 DIL--GKHDAPV-----------------RCIEYSYAAGQVITGSWDK--------------------------------  122 (342)
Q Consensus        94 ~~~--~~h~~~V-----------------~~~~~~~~~~~l~sgs~D~--------------------------------  122 (342)
                      ..+  .++...+                 ..+.|+|||+.|+.++.|.                                
T Consensus       145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~  224 (740)
T 4a5s_A          145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV  224 (740)
T ss_dssp             EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC
T ss_pred             EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc
Confidence            332  2333222                 3589999999998876443                                


Q ss_pred             ----cEEEEcCCC---CCCcceeeeeec----CCCCcE--EEEeccCCeEEEEEcC----CeEEEEeCCCCC----Cccc
Q 019384          123 ----SLKCWDPRG---ASGQERTLVGTY----PQPERV--YSLSLVGNRLVVATAG----RHVNVYDLRNMS----QPEQ  181 (342)
Q Consensus       123 ----~I~iWd~~~---~~~~~~~~~~~~----~~~~~v--~~~s~~~~~~~~~s~d----~~v~iwd~~~~~----~~~~  181 (342)
                          +|++||+.+   +.......+...    .+...+  ..++.+++.++.....    ..|.+||+.+++    ....
T Consensus       225 ~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~  304 (740)
T 4a5s_A          225 NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVA  304 (740)
T ss_dssp             CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGG
T ss_pred             CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEE
Confidence                467778765   321011111110    012223  3455666655544432    269999998865    1111


Q ss_pred             c-c-cccccee-----eEEEEEeeCCceEE-EEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384          182 R-R-ESSLKYQ-----TRCVRCYPNGTGYA-LSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH  252 (342)
Q Consensus       182 ~-~-~~~~~~~-----~~~v~~~~~~~~~~-~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  252 (342)
                      . . .......     ....+|+|||+.++ ..+ .++...|++||........   +..      +.   ..|..+. .
T Consensus       305 ~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~---lT~------g~---~~v~~~~-~  371 (740)
T 4a5s_A          305 RQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF---ITK------GT---WEVIGIE-A  371 (740)
T ss_dssp             GCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE---SCC------SS---SCEEEEE-E
T ss_pred             EEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe---ccc------CC---EEEEEEE-E
Confidence            1 0 0001111     23567999999766 444 6777888899975432111   110      10   1233332 2


Q ss_pred             CCCCe-EEEecC----CCeEEEE--eCCCceeeeccC----CCCcceEEEEECCCCCEEEEEEec
Q 019384          253 PIYGT-FATGGC----DGFVNVW--DGNNKKRLYQYS----KYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       253 p~~~~-l~sgs~----Dg~I~iW--d~~~~~~~~~~~----~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      ++++. ++++..    .+..+||  ++..+.....++    +....+..++|||||++++...+.
T Consensus       372 ~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~  436 (740)
T 4a5s_A          372 LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSG  436 (740)
T ss_dssp             ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECS
T ss_pred             EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCC
Confidence            34554 455554    2344555  444433222233    234568999999999988766643

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.68  E-value=1.3e-14  Score=129.45  Aligned_cols=276  Identities=9%  Similarity=-0.032  Sum_probs=170.2

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EEecCCcEEEEEeccCceeec-
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SASADHTVRRLVFSHGKEDIL-   96 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s~D~~i~~w~~~~~~~~~~-   96 (342)
                      +..|.+++|++++..+++.+.++++++|.  .........+...+.+++|.+++.++ ++..++.|.+|+..+++...+ 
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~   82 (333)
T 2dg1_A            5 QQDLPTLFYSGKSNSAVPIISESELQTIT--AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF   82 (333)
T ss_dssp             -CCCCBCCSCGGGGCSSCCCCGGGSCEEE--CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred             ccccceeeecCCccceeEEeecccCcccc--cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence            45688999999998888888999999992  22333334466677899998887776 567788999999887765433 


Q ss_pred             ccCCcceeEEEEeCCCCEEEEeeCC----CcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEc------
Q 019384           97 GKHDAPVRCIEYSYAAGQVITGSWD----KSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATA------  164 (342)
Q Consensus        97 ~~h~~~V~~~~~~~~~~~l~sgs~D----~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~------  164 (342)
                      ..+...+.+++++++++++++...+    +.|.+||.++...  ...+........+..+.+  +++.+++...      
T Consensus        83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~  160 (333)
T 2dg1_A           83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL--QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP  160 (333)
T ss_dssp             ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC--EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred             eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE--EEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence            3566789999999999887777666    6899999865432  111111111223444444  4444443332      


Q ss_pred             CCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhcccceeeeEEecCCCCcee
Q 019384          165 GRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV  243 (342)
Q Consensus       165 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~  243 (342)
                      .+.|..+|..+....  ..... ......++++|+++.++++ +.++.  +++||........ ..+....... .... 
T Consensus       161 ~~~l~~~~~~~~~~~--~~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~--i~~~d~~~~g~~~-~~~~~~~~~~-~~~~-  232 (333)
T 2dg1_A          161 LGGVYYVSPDFRTVT--PIIQN-ISVANGIALSTDEKVLWVTETTANR--LHRIALEDDGVTI-QPFGATIPYY-FTGH-  232 (333)
T ss_dssp             CEEEEEECTTSCCEE--EEEEE-ESSEEEEEECTTSSEEEEEEGGGTE--EEEEEECTTSSSE-EEEEEEEEEE-CCSS-
T ss_pred             CceEEEEeCCCCEEE--EeecC-CCcccceEECCCCCEEEEEeCCCCe--EEEEEecCCCcCc-ccccceEEEe-cCCC-
Confidence            234555665433211  11111 1135678899998866544 44554  4568774221110 0010000000 0000 


Q ss_pred             eeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCC------cceEEEEECCCCCEEEEEEecc
Q 019384          244 YPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYP------TSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       244 ~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~------~~V~~v~~spdg~~las~s~~~  307 (342)
                      ..+..++++++|..+++...++.|.+||.+ ++.+..+....      ..+.+++|+|||+.|.+++..+
T Consensus       233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            136779999999988887788999999985 55554443332      2689999999998777666554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=3.8e-14  Score=126.59  Aligned_cols=239  Identities=11%  Similarity=0.045  Sum_probs=154.9

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCC------------------------CcEEEEECCCceeeeeee--cCCceEEEEEeCCC
Q 019384           19 SDGISNLRFSNHSDHLLVSSWD------------------------KSVRLYDASANVLRGEFM--HGGPVLDCCFHDDS   72 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~D------------------------gti~vwd~~~~~~~~~~~--h~~~V~~~~~~~~~   72 (342)
                      -..|.+|+|+++|+++++.+.+                        ++|.+||..++++.....  +-..+.++++.+++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999999988888                        479999998877665543  33478899999877


Q ss_pred             CeE-EEecCCcEEEEEeccCc--eeec---------ccCCcceeEEEEeC-CCCEEEEee-CCCcEEEEcCCCCCCccee
Q 019384           73 SGF-SASADHTVRRLVFSHGK--EDIL---------GKHDAPVRCIEYSY-AAGQVITGS-WDKSLKCWDPRGASGQERT  138 (342)
Q Consensus        73 ~~~-s~s~D~~i~~w~~~~~~--~~~~---------~~h~~~V~~~~~~~-~~~~l~sgs-~D~~I~iWd~~~~~~~~~~  138 (342)
                      .++ +.+.++.|++|+.....  ...+         .++......++++| ++..+++.+ .++.|++||... .  ...
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~--~~~  179 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-K--FVT  179 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-C--EEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-C--EEE
Confidence            775 55567889999976542  2222         23445688999999 777777776 689999999532 1  112


Q ss_pred             eeeecCC----------CCcEEEEecc-CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc
Q 019384          139 LVGTYPQ----------PERVYSLSLV-GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS  207 (342)
Q Consensus       139 ~~~~~~~----------~~~v~~~s~~-~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s  207 (342)
                      .+.....          ...-++++.+ +..+++...+++|++||..+++....                          
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~--------------------------  233 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE--------------------------  233 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE--------------------------
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE--------------------------
Confidence            2211110          0112334444 33455556677899999864421100                          


Q ss_pred             cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcC------CCCeEEEecCCCeEEEEeCCCceeeecc
Q 019384          208 VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP------IYGTFATGGCDGFVNVWDGNNKKRLYQY  281 (342)
Q Consensus       208 ~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp------~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  281 (342)
                               +..... .                   ..+.+++|+|      ++..+++...+.+|++||..+++.+..+
T Consensus       234 ---------~~~~~~-~-------------------~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~  284 (329)
T 3fvz_A          234 ---------IKHASF-G-------------------RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF  284 (329)
T ss_dssp             ---------ECCTTT-T-------------------TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred             ---------Eecccc-C-------------------CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence                     000000 0                   0133445555      4444555556779999999988887776


Q ss_pred             ---CCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384          282 ---SKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       282 ---~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                         .++.....+|+++|||.++++.....           .|.++.++
T Consensus       285 ~~~~~~~~~p~~ia~~~dG~lyvad~~~~-----------~I~~~~~~  321 (329)
T 3fvz_A          285 KPVRKHFDMPHDIVASEDGTVYIGDAHTN-----------TVWKFTLT  321 (329)
T ss_dssp             CCSSSCCSSEEEEEECTTSEEEEEESSSC-----------CEEEEEEE
T ss_pred             cCCCCccCCeeEEEECCCCCEEEEECCCC-----------EEEEEeCC
Confidence               36677899999999997666554333           47777664

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.68  E-value=1e-14  Score=132.16  Aligned_cols=259  Identities=10%  Similarity=0.006  Sum_probs=164.6

Q ss_pred             EEEEcCCCCeEEEEe----------CCCcEEEEECCCceeeeeee-------cCCceEEEEEeCCCCe-EEEec--CCcE
Q 019384           24 NLRFSNHSDHLLVSS----------WDKSVRLYDASANVLRGEFM-------HGGPVLDCCFHDDSSG-FSASA--DHTV   83 (342)
Q Consensus        24 ~l~fs~~~~~l~s~s----------~Dgti~vwd~~~~~~~~~~~-------h~~~V~~~~~~~~~~~-~s~s~--D~~i   83 (342)
                      .++|+||+++|.++.          .|++|.+||..+.+....+.       +......+.|+++++. +++..  +++|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            899999999998876          37889999998766554432       2345667899987765 45543  5789


Q ss_pred             EEEEeccCceeec-ccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeeee---ecC-CCCc-EEEEeccC
Q 019384           84 RRLVFSHGKEDIL-GKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLVG---TYP-QPER-VYSLSLVG  156 (342)
Q Consensus        84 ~~w~~~~~~~~~~-~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~~---~~~-~~~~-v~~~s~~~  156 (342)
                      .+||..+.+.... ..+.. ...+.+.|++ ..+++.+.|+++.+|+.+.... ......   ... .... ......++
T Consensus       134 ~v~d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~g  211 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK-VASQSRSKQMFSVKDDPIFIAPALDK  211 (361)
T ss_dssp             EEEETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSS-EEEEEECCCCSCTTTSCBCSCCEECS
T ss_pred             EEEECCCCcEEEEEecCCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCc-EeeeccccceEcCCCCceEEEecccC
Confidence            9999988764322 22211 2235567765 6788899999999998753221 110000   000 0001 11123445


Q ss_pred             CeEEEEEcCCeEEEEeCCCCCCccccc-c------cccceeeE---EEEEeeCCceEEEEcc-C--------CeEEEEEe
Q 019384          157 NRLVVATAGRHVNVYDLRNMSQPEQRR-E------SSLKYQTR---CVRCYPNGTGYALSSV-E--------GRVAMEFF  217 (342)
Q Consensus       157 ~~~~~~s~d~~v~iwd~~~~~~~~~~~-~------~~~~~~~~---~v~~~~~~~~~~~~s~-~--------~~~~i~~~  217 (342)
                      ..++..+.++.+.++|+.......... .      ........   .++++|+++.+++... +        ....+++|
T Consensus       212 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~vi  291 (361)
T 2oiz_A          212 DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVM  291 (361)
T ss_dssp             SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred             CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEE
Confidence            667777888899999986542211000 0      00000111   2578899877766532 1        23456789


Q ss_pred             echhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCc--eeeeccCCCCcceEEEEECC
Q 019384          218 DLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNK--KRLYQYSKYPTSIAALSFSR  295 (342)
Q Consensus       218 d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~--~~~~~~~~~~~~V~~v~~sp  295 (342)
                      |..+.+....  +..+          . +..++|+|+|++|++++. ++|.+||.+++  +.+.++..+...-+.++|+|
T Consensus       292 D~~t~~~v~~--i~~~----------~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p  357 (361)
T 2oiz_A          292 DTKTKQRVAR--IPGR----------D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHP  357 (361)
T ss_dssp             ETTTTEEEEE--EECT----------T-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECC
T ss_pred             ECCCCcEEEE--EecC----------C-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecC
Confidence            9865432211  1111          1 678999999999988886 99999999999  88888766777789999999


Q ss_pred             CCC
Q 019384          296 DGR  298 (342)
Q Consensus       296 dg~  298 (342)
                      ||+
T Consensus       358 ~G~  360 (361)
T 2oiz_A          358 VGG  360 (361)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            986

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.68  E-value=8.3e-15  Score=130.85  Aligned_cols=230  Identities=9%  Similarity=0.026  Sum_probs=142.7

Q ss_pred             CeEEEEEcCCCCeEE-EEeCCCcEEEEECCCceeeeeeec-------CCceEEEEEeCCCCe-EEEecC-----------
Q 019384           21 GISNLRFSNHSDHLL-VSSWDKSVRLYDASANVLRGEFMH-------GGPVLDCCFHDDSSG-FSASAD-----------   80 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~-s~s~Dgti~vwd~~~~~~~~~~~h-------~~~V~~~~~~~~~~~-~s~s~D-----------   80 (342)
                      .+..++|+|++++++ ++..+++|.+||+.+++.......       ...+.+++|+++++. ++++.+           
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            578999999998664 556789999999988776544432       223788999987764 566544           


Q ss_pred             -CcEEEEEeccCcee---ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC--CC--------
Q 019384           81 -HTVRRLVFSHGKED---ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP--QP--------  146 (342)
Q Consensus        81 -~~i~~w~~~~~~~~---~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~--------  146 (342)
                       +.+.+||+.+++..   ....+...+.+++|+|+++ ++.++.  .|.+||++++...  ..+....  ..        
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~  198 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYT--VALPLRNWNRKGYSAPDVL  198 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEE--EEECSTTCCCTTBCCCBCC
T ss_pred             CCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCcee--ccccccccCCccccCccce
Confidence             89999999875421   1122334688999999998 655544  4999998754321  1111100  00        


Q ss_pred             --------C----cEEEEeccCC-------------eEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEee-CC
Q 019384          147 --------E----RVYSLSLVGN-------------RLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYP-NG  200 (342)
Q Consensus       147 --------~----~v~~~s~~~~-------------~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~~  200 (342)
                              .    ....+.+.++             .+.....++.+++|++..           .......++++| ++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~sp~dg  267 (349)
T 1jmx_B          199 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-----------LTELYFTGLRSPKDP  267 (349)
T ss_dssp             CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE-----------CSSCEEEEEECSSCT
T ss_pred             eeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc-----------CCCcceeeEecCCCC
Confidence                    0    0111111100             011122223344444321           122456788899 99


Q ss_pred             ceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeec
Q 019384          201 TGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQ  280 (342)
Q Consensus       201 ~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~  280 (342)
                      +.++++  ++  .+++||..+.......  ..          ...+.+++|+|++++|++++.++.|++||.++++.+..
T Consensus       268 ~~l~~~--~~--~v~~~d~~~~~~~~~~--~~----------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~  331 (349)
T 1jmx_B          268 NQIYGV--LN--RLAKYDLKQRKLIKAA--NL----------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN  331 (349)
T ss_dssp             TEEEEE--ES--EEEEEETTTTEEEEEE--EC----------SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred             CEEEEE--cC--eEEEEECccCeEEEEE--cC----------CCCccceEECCCCCEEEEecCCCeEEEEeccccceeee
Confidence            988877  44  4567998643221111  11          01367899999999998888999999999998887766


Q ss_pred             cC
Q 019384          281 YS  282 (342)
Q Consensus       281 ~~  282 (342)
                      ++
T Consensus       332 ~~  333 (349)
T 1jmx_B          332 IK  333 (349)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.65  E-value=2.7e-13  Score=118.15  Aligned_cols=243  Identities=8%  Similarity=-0.011  Sum_probs=153.9

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee------ecCCceEEEEEe-CCCCeEEEec--CCcEEEE
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF------MHGGPVLDCCFH-DDSSGFSASA--DHTVRRL   86 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~------~h~~~V~~~~~~-~~~~~~s~s~--D~~i~~w   86 (342)
                      ..+-..+.+++++++++++++...++.|++||.....+....      .+...+.++++. +++.++.+..  ++.|.+|
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            455678999999999998888889999999998744332221      133567899994 6777766553  7889999


Q ss_pred             EeccCceeec-ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc--CCeEEEEE
Q 019384           87 VFSHGKEDIL-GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV--GNRLVVAT  163 (342)
Q Consensus        87 ~~~~~~~~~~-~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s  163 (342)
                      +........+ ..+...+.+++++++++.+++.+.++.|.+||...   .....+...........+.++  ++.+++.+
T Consensus       106 d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g---~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~  182 (286)
T 1q7f_A          106 NQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG---NVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  182 (286)
T ss_dssp             CTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS---CEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             CCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC---CEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence            8433223333 23446789999999998888888889999999642   111222211122234445544  44555556


Q ss_pred             cCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCC-eEEEEEeechhhhhcccceeeeEEecCCCCce
Q 019384          164 AGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEG-RVAMEFFDLSEASQAKKYAFKCHRKSEAGRDI  242 (342)
Q Consensus       164 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~-~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~  242 (342)
                      .++.|++||.... .............+..+++.+++..+++...++ .+  .+||... ...  ..+..+..       
T Consensus       183 ~~~~i~~~~~~g~-~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i--~~~~~~g-~~~--~~~~~~~~-------  249 (286)
T 1q7f_A          183 RAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNL--TIFTQDG-QLI--SALESKVK-------  249 (286)
T ss_dssp             GGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEE--EEECTTS-CEE--EEEEESSC-------
T ss_pred             CCCEEEEEcCCCC-EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEE--EEECCCC-CEE--EEEcccCC-------
Confidence            6889999997532 111111111113467888999998776666554 55  5588532 111  11221111       


Q ss_pred             eeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCc
Q 019384          243 VYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNK  275 (342)
Q Consensus       243 ~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~  275 (342)
                      ...+.+++++|+|+++++ +.|++|++|+....
T Consensus       250 ~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          250 HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             CSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            012568999999987777 56999999987653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.63  E-value=1e-13  Score=124.16  Aligned_cols=250  Identities=9%  Similarity=0.006  Sum_probs=153.9

Q ss_pred             CCeEEEEEcCCCCeEEEE---------eCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEecC---Cc--EE
Q 019384           20 DGISNLRFSNHSDHLLVS---------SWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASAD---HT--VR   84 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~---------s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D---~~--i~   84 (342)
                      ..+..++|  ||++++..         +.++.|.+||+.+++.+..    ..+..+.|+|+++. +.++.+   +.  |.
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            46778888  89888754         2378899999988765443    56788999988865 444433   33  56


Q ss_pred             EEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCC---------------------------CcEEEEcCCCCCCcce
Q 019384           85 RLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWD---------------------------KSLKCWDPRGASGQER  137 (342)
Q Consensus        85 ~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D---------------------------~~I~iWd~~~~~~~~~  137 (342)
                      +|++.+++...+..+.. +.+++|+||++.|+.++.+                           ..|.+||+.++..  .
T Consensus        89 ~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~--~  165 (347)
T 2gop_A           89 VADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV--I  165 (347)
T ss_dssp             EEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE--E
T ss_pred             EEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE--E
Confidence            66666666544444444 9999999999988877643                           5688999875432  0


Q ss_pred             eeeeecCCCCcEEEEeccCCeEEEEEcCC-------eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCC
Q 019384          138 TLVGTYPQPERVYSLSLVGNRLVVATAGR-------HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEG  210 (342)
Q Consensus       138 ~~~~~~~~~~~v~~~s~~~~~~~~~s~d~-------~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~  210 (342)
                      ..+.. . ......++.++ .++++..+.       ...+|.+.++ .. ......  .....  ++|+|+.++..+.+.
T Consensus       166 ~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~-~~l~~~--~~~~~--~spdg~~l~~~~~~~  236 (347)
T 2gop_A          166 EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KE-EKMFEK--VSFYA--VDSDGERILLYGKPE  236 (347)
T ss_dssp             EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-EE-EEEEEE--ESEEE--EEECSSCEEEEECCS
T ss_pred             eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-ce-EEeccC--cceee--ECCCCCEEEEEEccc
Confidence            12222 2 33344566666 555554432       3345544332 11 111111  22223  389999887776443


Q ss_pred             ------eEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE-EEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCC
Q 019384          211 ------RVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA-IAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSK  283 (342)
Q Consensus       211 ------~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~-v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~  283 (342)
                            ...|++|| . .. ... ....|         ...+.. ++|+ ++ .+++++.|+.++|| +.+++.. .+..
T Consensus       237 ~~~~~~~~~l~~~d-~-~~-~~~-l~~~~---------~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~  299 (347)
T 2gop_A          237 KKYMSEHNKLYIYD-G-KE-VMG-ILDEV---------DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAK  299 (347)
T ss_dssp             SSCCCSSCEEEEEC-S-SC-EEE-SSTTC---------CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEEC
T ss_pred             cCCccccceEEEEC-C-Cc-eEe-ccccC---------CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEec
Confidence                  34567777 2 11 111 01111         124665 8899 88 89999999999999 8755443 3334


Q ss_pred             CCcceEEEEECCCCCEEEEEEec
Q 019384          284 YPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       284 ~~~~V~~v~~spdg~~las~s~~  306 (342)
                      +...|.+++|+|  .++++++++
T Consensus       300 ~~~~v~~~~~s~--~~~~~~~~~  320 (347)
T 2gop_A          300 GRHWIMGFDVDE--IVVYLKETA  320 (347)
T ss_dssp             SSSEEEEEEESS--SEEEEEECS
T ss_pred             CCCeEEeeeeeC--cEEEEEcCC
Confidence            567899999999  666666554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.62  E-value=2e-13  Score=134.53  Aligned_cols=249  Identities=9%  Similarity=-0.012  Sum_probs=160.9

Q ss_pred             CCCCCCCeEEEEEcCCCCeEEEEeCCC-----cEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEecCCc------
Q 019384           15 GNPPSDGISNLRFSNHSDHLLVSSWDK-----SVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSASADHT------   82 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dg-----ti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~------   82 (342)
                      .+.+...+.+++|||||++||.++.++     +|++||+.+++..........+..++|++|++ ++.++.++.      
T Consensus       120 ~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~  199 (710)
T 2xdw_A          120 SDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (710)
T ss_dssp             CTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             ccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccc
Confidence            344445688999999999998776544     89999999887655332233367899997765 556676665      


Q ss_pred             ----------EEEEEeccCce---eeccc--CCcceeEEEEeCCCCEEEEeeC-----CCcEEEEcCCC------CCCcc
Q 019384           83 ----------VRRLVFSHGKE---DILGK--HDAPVRCIEYSYAAGQVITGSW-----DKSLKCWDPRG------ASGQE  136 (342)
Q Consensus        83 ----------i~~w~~~~~~~---~~~~~--h~~~V~~~~~~~~~~~l~sgs~-----D~~I~iWd~~~------~~~~~  136 (342)
                                |.+|++.++..   ..+..  |...+..++|+||++.|+.++.     +..|.+||+.+      +....
T Consensus       200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~  279 (710)
T 2xdw_A          200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (710)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence                      88999887652   22232  4556889999999998876654     56899999864      22111


Q ss_pred             eeeeeecCCCCcEEEEeccCCeEEEEEcCC----eEEEEeCCCCCCc-ccccccccc-eeeEEEEEeeCCceEEEEccCC
Q 019384          137 RTLVGTYPQPERVYSLSLVGNRLVVATAGR----HVNVYDLRNMSQP-EQRRESSLK-YQTRCVRCYPNGTGYALSSVEG  210 (342)
Q Consensus       137 ~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~----~v~iwd~~~~~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~s~~~  210 (342)
                       ..+..... .....++.+++.++..+..+    .|.+||+.+.... ......... ..+..+.+++++..+++...++
T Consensus       280 -~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g  357 (710)
T 2xdw_A          280 -VKLIDNFE-GEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV  357 (710)
T ss_dssp             -EEEECSSS-SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred             -EEeeCCCC-cEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC
Confidence             22222211 12234677788777766543    5999999775321 111111212 2455677777777777888888


Q ss_pred             eEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEe----cCCCeEEEEeCCCce
Q 019384          211 RVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATG----GCDGFVNVWDGNNKK  276 (342)
Q Consensus       211 ~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sg----s~Dg~I~iWd~~~~~  276 (342)
                      ...+++|+........  .+..+         ...+..++++|++..|+..    ...++|++||+.+++
T Consensus       358 ~~~l~~~~~~~g~~~~--~l~~~---------~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          358 KNTLQLHDLATGALLK--IFPLE---------VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEEEETTTCCEEE--EECCC---------SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEEEECCCCCEEE--ecCCC---------CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            8888889874332111  12221         1247788999998766522    346799999998765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.60  E-value=2.9e-13  Score=122.55  Aligned_cols=267  Identities=10%  Similarity=0.025  Sum_probs=157.2

Q ss_pred             CCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEe----------cCCcEEEEEeccCcee-ecc---c---CC
Q 019384           39 WDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSAS----------ADHTVRRLVFSHGKED-ILG---K---HD  100 (342)
Q Consensus        39 ~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s----------~D~~i~~w~~~~~~~~-~~~---~---h~  100 (342)
                      .|++|.+||..++++...+.-.... .++|+++++. +++.          .++.|.+||..+.+.. .+.   +   +.
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g  107 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL  107 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBC
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccC
Confidence            4789999999887765544322223 8899988765 4554          2567999998876532 221   1   23


Q ss_pred             cceeEEEEeCCCCEEEEeeC--CCcEEEEcCCCCCCcceeeeee-cCCCCc-EEEEeccC-CeEEEEEcCCeEEEEeCCC
Q 019384          101 APVRCIEYSYAAGQVITGSW--DKSLKCWDPRGASGQERTLVGT-YPQPER-VYSLSLVG-NRLVVATAGRHVNVYDLRN  175 (342)
Q Consensus       101 ~~V~~~~~~~~~~~l~sgs~--D~~I~iWd~~~~~~~~~~~~~~-~~~~~~-v~~~s~~~-~~~~~~s~d~~v~iwd~~~  175 (342)
                      .....++++|++++|+.+..  +++|.+||+++...     +.. ...... ...+.+.+ ..+++.+.|+.+.+|++..
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~-----~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~  182 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY-----VEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGE  182 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE-----EEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE-----EEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence            45678999999999988764  68999999875421     222 211111 01233333 4677888899998888754


Q ss_pred             CCCccccc----ccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcc--cceeeeEEecCCCCceeeeeeEE
Q 019384          176 MSQPEQRR----ESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAK--KYAFKCHRKSEAGRDIVYPVNAI  249 (342)
Q Consensus       176 ~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~--~~~~~~h~~~~~~~~~~~~v~~v  249 (342)
                      ........    ..........+...+++..++..+.++.+  +.+|........  .+.+........+. .......+
T Consensus       183 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v--~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~p~g~~~~  259 (361)
T 2oiz_A          183 DGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNV--YSADFSGDEVKVDGPWSLLNDEDKAKNW-VPGGYNLV  259 (361)
T ss_dssp             TSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEE--EEEECSSSSCEEEEEEESCCHHHHHTTC-EECCSSCE
T ss_pred             CCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeE--EEEEecCCCceecccccccCcccccccc-ccCCeeEE
Confidence            21111000    00000011122235666666666666654  557764321100  00000000000000 00012237


Q ss_pred             EEcCCCCeEEEecC-----------CCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCC
Q 019384          250 AFHPIYGTFATGGC-----------DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPD  318 (342)
Q Consensus       250 ~~sp~~~~l~sgs~-----------Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~  318 (342)
                      +|+|+++.++.+..           .++|.+||..+++.+.++..+.  +++++|+|||++|.+++.     +       
T Consensus       260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-----~-------  325 (361)
T 2oiz_A          260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-----G-------  325 (361)
T ss_dssp             EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-----S-------
T ss_pred             EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-----C-------
Confidence            89999887765432           3589999999999998888776  999999999999887653     2       


Q ss_pred             cEEEEEccCC
Q 019384          319 AIFVRSVNEI  328 (342)
Q Consensus       319 ~~~~~~~~~~  328 (342)
                      .|.+|+.+.+
T Consensus       326 ~v~v~D~~t~  335 (361)
T 2oiz_A          326 NVNVYDISQP  335 (361)
T ss_dssp             CEEEEECSSS
T ss_pred             eEEEEECCCC
Confidence            4777776555

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.59  E-value=2e-11  Score=106.43  Aligned_cols=264  Identities=7%  Similarity=-0.037  Sum_probs=167.8

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee--ecCCceEEEEEeCCCCeEEEe-cCCcEEEEEeccCcee
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF--MHGGPVLDCCFHDDSSGFSAS-ADHTVRRLVFSHGKED   94 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~--~h~~~V~~~~~~~~~~~~s~s-~D~~i~~w~~~~~~~~   94 (342)
                      +...+.+++++++|+..++...++.|.+||.. +......  .+...+.++++.+++.++.+. .++.+..|+.. +...
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~   90 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIK   90 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEE
Confidence            35689999999999988877778999999988 5443322  245678899998777776554 47788888865 3322


Q ss_pred             ec--ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc--CCeEEEEEcCCeEEE
Q 019384           95 IL--GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV--GNRLVVATAGRHVNV  170 (342)
Q Consensus        95 ~~--~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~d~~v~i  170 (342)
                      .+  ......+.++++.+++.++++...++.|.+||. ++..   ...........+..+..+  ++.+++...++.|..
T Consensus        91 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  166 (299)
T 2z2n_A           91 EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI---REYELPNKGSYPSFITLGSDNALWFTENQNNAIGR  166 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE---EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE---EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence            22  234567899999998888887777889999997 3221   111111112234445544  444444445678999


Q ss_pred             EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384          171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA  250 (342)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  250 (342)
                      ||. +++... .........+..+++.+++..+++...++.+  ..||. ... ...+.+..         ....+.+++
T Consensus       167 ~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i--~~~~~-~g~-~~~~~~~~---------~~~~~~~i~  231 (299)
T 2z2n_A          167 ITE-SGDITE-FKIPTPASGPVGITKGNDDALWFVEIIGNKI--GRITT-SGE-ITEFKIPT---------PNARPHAIT  231 (299)
T ss_dssp             ECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEE--EEECT-TCC-EEEEECSS---------TTCCEEEEE
T ss_pred             EcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEEccCCceE--EEECC-CCc-EEEEECCC---------CCCCceeEE
Confidence            998 443211 1111112345678888888865555455544  45776 221 11111110         012477899


Q ss_pred             EcCCCCeEEEecCCCeEEEEeCCCceee-eccCCCCcceEEEEECCCCCEEEEEE
Q 019384          251 FHPIYGTFATGGCDGFVNVWDGNNKKRL-YQYSKYPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       251 ~sp~~~~l~sgs~Dg~I~iWd~~~~~~~-~~~~~~~~~V~~v~~spdg~~las~s  304 (342)
                      ++++|..+++...++.|.+||.. ++.. ..+..+...+.++++ ++|++.++.+
T Consensus       232 ~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~  284 (299)
T 2z2n_A          232 AGAGIDLWFTEWGANKIGRLTSN-NIIEEYPIQIKSAEPHGICF-DGETIWFAME  284 (299)
T ss_dssp             ECSTTCEEEEETTTTEEEEEETT-TEEEEEECSSSSCCEEEEEE-CSSCEEEEET
T ss_pred             ECCCCCEEEeccCCceEEEECCC-CceEEEeCCCCCCccceEEe-cCCCEEEEec
Confidence            99999877777778999999984 4432 223445567899999 9999877653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.58  E-value=2.6e-12  Score=126.50  Aligned_cols=266  Identities=10%  Similarity=-0.007  Sum_probs=158.9

Q ss_pred             CCCCeEEEEeCC-Cc--EEEEEC--CCceeeeee-------ecCCceEEEEEeCCCCeE-EEec-CC----cEEEEEecc
Q 019384           29 NHSDHLLVSSWD-KS--VRLYDA--SANVLRGEF-------MHGGPVLDCCFHDDSSGF-SASA-DH----TVRRLVFSH   90 (342)
Q Consensus        29 ~~~~~l~s~s~D-gt--i~vwd~--~~~~~~~~~-------~h~~~V~~~~~~~~~~~~-s~s~-D~----~i~~w~~~~   90 (342)
                      |+|++++-...+ +.  -.||..  .++.....+       .|...+..+.|+|+++.+ .++. +|    .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            788877644433 21  144543  333322111       133357889999888754 3332 23    799999988


Q ss_pred             CceeecccCCcceeEEEEeCCCCEEEEeeCCCc----------------EEEEcCCCCCCcceeeeeecCCCCc--EEEE
Q 019384           91 GKEDILGKHDAPVRCIEYSYAAGQVITGSWDKS----------------LKCWDPRGASGQERTLVGTYPQPER--VYSL  152 (342)
Q Consensus        91 ~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~----------------I~iWd~~~~~~~~~~~~~~~~~~~~--v~~~  152 (342)
                      ++..........+.+++|+||++.|+.++.|+.                |++|++.++............+...  ...+
T Consensus       161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~  240 (710)
T 2xdw_A          161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL  240 (710)
T ss_dssp             TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE
T ss_pred             CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE
Confidence            874432222223678999999999998888876                9999987543221122222112222  3456


Q ss_pred             eccCCeEEEEEc-----CCeEEEEeCCC------CCCcccccccccceeeEEEEEeeCCceEEEEccCC--eEEEEEeec
Q 019384          153 SLVGNRLVVATA-----GRHVNVYDLRN------MSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEG--RVAMEFFDL  219 (342)
Q Consensus       153 s~~~~~~~~~s~-----d~~v~iwd~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~--~~~i~~~d~  219 (342)
                      +.+++.++..+.     +..|.+||+.+      +............. ... .++++|..+++.+..+  ...|+.||.
T Consensus       241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~  318 (710)
T 2xdw_A          241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG-EYD-YVTNEGTVFTFKTNRHSPNYRLINIDF  318 (710)
T ss_dssp             CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS-CEE-EEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred             cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCc-EEE-EEeccCCEEEEEECCCCCCCEEEEEeC
Confidence            667777777665     56899999875      32111111111111 122 4678888777665432  345677887


Q ss_pred             hhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCe--EEEEeCCCceeeeccCCCCcceEEEEECCCC
Q 019384          220 SEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGF--VNVWDGNNKKRLYQYSKYPTSIAALSFSRDG  297 (342)
Q Consensus       220 ~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~--I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg  297 (342)
                      ..........+..|...       ..+..++|++++.++++...|+.  |++||..+++.+..+..+...|..++++||+
T Consensus       319 ~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~  391 (710)
T 2xdw_A          319 TDPEESKWKVLVPEHEK-------DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKD  391 (710)
T ss_dssp             TSCCGGGCEEEECCCSS-------CEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTC
T ss_pred             CCCCcccceeccCCCCC-------CeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCC
Confidence            54321111122222110       14677889887888899988985  5666776777677777777889999999999


Q ss_pred             CEEEEE
Q 019384          298 RLLAVA  303 (342)
Q Consensus       298 ~~las~  303 (342)
                      ..|+..
T Consensus       392 ~~l~~~  397 (710)
T 2xdw_A          392 TEIFYQ  397 (710)
T ss_dssp             SEEEEE
T ss_pred             CEEEEE
Confidence            866544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.57  E-value=1.4e-13  Score=125.03  Aligned_cols=251  Identities=12%  Similarity=0.024  Sum_probs=147.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee-ecCCceEEEEE--eCCCCeEEE---------------
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF-MHGGPVLDCCF--HDDSSGFSA---------------   77 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~-~h~~~V~~~~~--~~~~~~~s~---------------   77 (342)
                      ..+...+..++|+|||++|+.++.++.|++||+.+++..... .+.+.+....|  ++++..+.+               
T Consensus        77 ~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~  156 (388)
T 3pe7_A           77 EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK  156 (388)
T ss_dssp             CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred             eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccc
Confidence            445556667899999999999999999999999887654433 34444444444  577766542               


Q ss_pred             --------ecCCcEEEEEeccCceeecccCCcceeEEEEeC-CCCEEEEeeCC------CcEEEEcCCCCCCcceeeeee
Q 019384           78 --------SADHTVRRLVFSHGKEDILGKHDAPVRCIEYSY-AAGQVITGSWD------KSLKCWDPRGASGQERTLVGT  142 (342)
Q Consensus        78 --------s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~sgs~D------~~I~iWd~~~~~~~~~~~~~~  142 (342)
                              ..+..|.+|++.+++...+..+...+..++|+| +++.|+.++.+      ..|.++|+.....  . .+..
T Consensus       157 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~--~-~l~~  233 (388)
T 3pe7_A          157 KFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM--R-KVKT  233 (388)
T ss_dssp             HHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC--E-ESCC
T ss_pred             hhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce--E-Eeee
Confidence                    234578889988887766667777899999999 99888776653      3677778654221  1 1211


Q ss_pred             cCCCCcE--EEEeccCCeEEEEEcC--C---eEEEEeCCCCCCccccccccccee---eEEEEEeeCCceEEEEcc----
Q 019384          143 YPQPERV--YSLSLVGNRLVVATAG--R---HVNVYDLRNMSQPEQRRESSLKYQ---TRCVRCYPNGTGYALSSV----  208 (342)
Q Consensus       143 ~~~~~~v--~~~s~~~~~~~~~s~d--~---~v~iwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~s~----  208 (342)
                      ......+  ..++++++.|+..+..  +   .|.+||+.+++.............   .....++|+|+.++....    
T Consensus       234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  313 (388)
T 3pe7_A          234 HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSG  313 (388)
T ss_dssp             CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---------
T ss_pred             CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccc
Confidence            1111122  3466677777655442  2   399999987643211111110000   112368899988775532    


Q ss_pred             ---CCeEEEEEeechhhhhcccceeeeEEecCCC--CceeeeeeEEEEcCCCCeEEEec-CCCeEEEEeC
Q 019384          209 ---EGRVAMEFFDLSEASQAKKYAFKCHRKSEAG--RDIVYPVNAIAFHPIYGTFATGG-CDGFVNVWDG  272 (342)
Q Consensus       209 ---~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~--~~~~~~v~~v~~sp~~~~l~sgs-~Dg~I~iWd~  272 (342)
                         ++...|++||......   ..+..|......  ......+..++|+|||+.|+..+ .+|...||.+
T Consensus       314 ~~~~~~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          314 YKIENDPFLYVFNMKNGTQ---HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             ---CCCCEEEEEETTTTEE---EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             cccCCCCEEEEEeccCCce---EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence               3444678899864321   122222210000  00000256789999999877655 5777777754

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.55  E-value=5.6e-13  Score=130.98  Aligned_cols=244  Identities=7%  Similarity=-0.101  Sum_probs=153.2

Q ss_pred             CCCCCCCCeEEEEEcCCCCeEE-----EEeCCCcEEEEECCCceee-eeeecCCce--EEEEEeCCCC-eEEEecCCc--
Q 019384           14 LGNPPSDGISNLRFSNHSDHLL-----VSSWDKSVRLYDASANVLR-GEFMHGGPV--LDCCFHDDSS-GFSASADHT--   82 (342)
Q Consensus        14 ~~~~~~~~V~~l~fs~~~~~l~-----s~s~Dgti~vwd~~~~~~~-~~~~h~~~V--~~~~~~~~~~-~~s~s~D~~--   82 (342)
                      +.+.|...+.+++|||||++||     +|+.+.+|++||+.+++.+ ..  +...+  ..++|+++++ ++.++.|..  
T Consensus       115 ~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~--~~~~~~~~~~~wspDg~~l~~~~~d~~~~  192 (695)
T 2bkl_A          115 WSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD--VIEGGKYATPKWTPDSKGFYYEWLPTDPS  192 (695)
T ss_dssp             SSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC--CBSCCTTCCCEECTTSSEEEEEECCCCTT
T ss_pred             hccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc--ccCcccccceEEecCCCEEEEEEecCCCC
Confidence            3445556789999999999998     5556689999999988754 21  22222  6789998876 457777765  


Q ss_pred             -----------EEEEEeccCce---eecc--cCCcceeEEEEeCCCCEEEEeeCCC----cEEEEcCCCCCCcceeeeee
Q 019384           83 -----------VRRLVFSHGKE---DILG--KHDAPVRCIEYSYAAGQVITGSWDK----SLKCWDPRGASGQERTLVGT  142 (342)
Q Consensus        83 -----------i~~w~~~~~~~---~~~~--~h~~~V~~~~~~~~~~~l~sgs~D~----~I~iWd~~~~~~~~~~~~~~  142 (342)
                                 |++|++.++..   .++.  .|...+.++.|+|||++|+.++.++    .|.+||..++  .... +..
T Consensus       193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~--~~~~-l~~  269 (695)
T 2bkl_A          193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK--DFRL-LVK  269 (695)
T ss_dssp             SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS--SCEE-EEE
T ss_pred             CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC--ceEE-eec
Confidence                       99999987752   2222  3556788999999999888777666    6777765432  2222 222


Q ss_pred             cCCCCcEEEEeccCCeEEEEEc----CCeEEEEeCCCCCCc-cccccccc-ceeeEEEEEeeCCceEEEEccCCeEEEEE
Q 019384          143 YPQPERVYSLSLVGNRLVVATA----GRHVNVYDLRNMSQP-EQRRESSL-KYQTRCVRCYPNGTGYALSSVEGRVAMEF  216 (342)
Q Consensus       143 ~~~~~~v~~~s~~~~~~~~~s~----d~~v~iwd~~~~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~s~~~~~~i~~  216 (342)
                      ..... ...+..+++ ++..+.    ++.|.+||+.++... ........ ...+..++++ ++..+++...++...+++
T Consensus       270 ~~~~~-~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~  346 (695)
T 2bkl_A          270 GVGAK-YEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRV  346 (695)
T ss_dssp             CSSCC-EEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             CCCce-EEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence            21111 122234555 555554    468999999765321 01111111 2234556666 666777778888888888


Q ss_pred             eechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEE----EecCCCeEEEEeCCCce
Q 019384          217 FDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFA----TGGCDGFVNVWDGNNKK  276 (342)
Q Consensus       217 ~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~----sgs~Dg~I~iWd~~~~~  276 (342)
                      ++.... ....  +..+        ....+..++++|++..|+    +....++|++||+.+++
T Consensus       347 ~~~~g~-~~~~--l~~~--------~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          347 ATLKGK-PVRT--VQLP--------GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EETTCC-EEEE--CCCS--------SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EeCCCC-eeEE--ecCC--------CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            875321 1111  1111        012467788999998776    34456799999998765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.54  E-value=5.7e-12  Score=110.40  Aligned_cols=229  Identities=12%  Similarity=0.060  Sum_probs=148.2

Q ss_pred             CCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEec-CCcEEEEEeccCcee
Q 019384           17 PPSDGISNLRFSNHSD-HLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASA-DHTVRRLVFSHGKED   94 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~-~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~-D~~i~~w~~~~~~~~   94 (342)
                      .......+++|+|+++ +++++..++.|.+||..++ ......+.+.+.++++.+++.++.+.. ++.|.+|+..+++..
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~  103 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE  103 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence            4456778999999998 7788889999999999887 555555777899999998888776554 578999998776643


Q ss_pred             ecc-c----CCcceeEEEEeCCCCEEEE----eeC-------------CCcEEEEcCCCCCCcceeeeeecCCCCcEEEE
Q 019384           95 ILG-K----HDAPVRCIEYSYAAGQVIT----GSW-------------DKSLKCWDPRGASGQERTLVGTYPQPERVYSL  152 (342)
Q Consensus        95 ~~~-~----h~~~V~~~~~~~~~~~l~s----gs~-------------D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~  152 (342)
                      .+. .    ....++.++++|+|.+++|    |+.             .+.|..+|..   +......... ....-+.+
T Consensus       104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~~~~~~~-~~~~gi~~  179 (296)
T 3e5z_A          104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD---GTLSAPIRDR-VKPNGLAF  179 (296)
T ss_dssp             EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT---SCEEEEECCC-SSEEEEEE
T ss_pred             EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC---CCEEEeecCC-CCCccEEE
Confidence            321 1    1234678999999988887    331             2355555543   2111111111 11122345


Q ss_pred             eccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeee
Q 019384          153 SLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKC  232 (342)
Q Consensus       153 s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~  232 (342)
                      +.+++.+++.+.++.|.+||+.....        +.   ..                    ...+...            
T Consensus       180 s~dg~~lv~~~~~~~i~~~~~~~~g~--------~~---~~--------------------~~~~~~~------------  216 (296)
T 3e5z_A          180 LPSGNLLVSDTGDNATHRYCLNARGE--------TE---YQ--------------------GVHFTVE------------  216 (296)
T ss_dssp             CTTSCEEEEETTTTEEEEEEECSSSC--------EE---EE--------------------EEEECCS------------
T ss_pred             CCCCCEEEEeCCCCeEEEEEECCCCc--------Cc---CC--------------------CeEeeCC------------
Confidence            55566665556667888888752100        00   00                    0011100            


Q ss_pred             EEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEE-CCCCCEEEEEEecc
Q 019384          233 HRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSF-SRDGRLLAVASSYT  307 (342)
Q Consensus       233 h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~-spdg~~las~s~~~  307 (342)
                                ...+..++++++|.++++.  ++.|.+||.+ ++.+..+..+.. +.+++| +||++.|.+++...
T Consensus       217 ----------~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          217 ----------PGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             ----------SSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred             ----------CCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence                      0024568999999866666  8899999987 666666666666 899999 69999888887543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.54  E-value=1.3e-11  Score=106.22  Aligned_cols=237  Identities=9%  Similarity=-0.028  Sum_probs=147.4

Q ss_pred             CeEEEEEcCCCCeEE-EEeCCCcEEEEECCCceeeee-eecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecc-
Q 019384           21 GISNLRFSNHSDHLL-VSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILG-   97 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~-s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~-   97 (342)
                      ...++++++++++++ +...++.|.+||..+...... ..+...+.++++.+++.++.+..++.|..|+........+. 
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~  104 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF  104 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeec
Confidence            788999999999777 557889999999865443222 22335678899987777776655888999987765543332 


Q ss_pred             cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCC
Q 019384           98 KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMS  177 (342)
Q Consensus        98 ~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~  177 (342)
                      .....+..+++.+++..+++...++.|.+||..+...  .............+.++.+++.+++...++.|.+||.....
T Consensus       105 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~  182 (270)
T 1rwi_B          105 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  182 (270)
T ss_dssp             CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC--EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee--EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence            2335788999999998778777788999998643211  11000000111223344445444444445667777654321


Q ss_pred             CcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCe
Q 019384          178 QPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGT  257 (342)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~  257 (342)
                      ..                                    ....  . .                  ...+..++++++|..
T Consensus       183 ~~------------------------------------~~~~--~-~------------------~~~p~~i~~d~~g~l  205 (270)
T 1rwi_B          183 QV------------------------------------VLPF--T-D------------------ITAPWGIAVDEAGTV  205 (270)
T ss_dssp             EE------------------------------------ECCC--S-S------------------CCSEEEEEECTTCCE
T ss_pred             eE------------------------------------eecc--c-C------------------CCCceEEEECCCCCE
Confidence            00                                    0000  0 0                  012567899999987


Q ss_pred             EEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          258 FATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       258 l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      +++...++.|.+||............+...+.+++++|||+++++.+...           .|.++++.+
T Consensus       206 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~-----------~v~~~~~~~  264 (270)
T 1rwi_B          206 YVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND-----------RVVKLTSLE  264 (270)
T ss_dssp             EEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGT-----------EEEEECCCG
T ss_pred             EEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCC-----------EEEEEcCCC
Confidence            88888889999999876543332223345789999999999776655443           477776654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.52  E-value=4e-12  Score=113.62  Aligned_cols=233  Identities=9%  Similarity=0.019  Sum_probs=143.8

Q ss_pred             CCeEEEEEcCCCCeEEEEeCC---C--cEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEecC-------------
Q 019384           20 DGISNLRFSNHSDHLLVSSWD---K--SVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASAD-------------   80 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~D---g--ti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D-------------   80 (342)
                      ..+.+++|||||++||.++.+   +  .|.+||+.+++......+.. +..+.|+|+++. +.++.+             
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            457889999999999987754   3  37778888777665555555 899999987764 444432             


Q ss_pred             --------------CcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCC-------cEEEEcCCCCCCccee
Q 019384           81 --------------HTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDK-------SLKCWDPRGASGQERT  138 (342)
Q Consensus        81 --------------~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~-------~I~iWd~~~~~~~~~~  138 (342)
                                    ..+.+|++.+++. ..+.. . .+..++|+|++ .+++++.+.       ...||.+.+  +....
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~--~~~~~  212 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED--GKEEK  212 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET--TEEEE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCC--CceEE
Confidence                          4577888877765 44444 3 78899999999 777776552       445554432  22222


Q ss_pred             eeeecCCCCcEEEEeccCCeEEEEEcCC--------eEEEEeCCCCCCcccccccccceeeEE-EEEeeCCceEEEEccC
Q 019384          139 LVGTYPQPERVYSLSLVGNRLVVATAGR--------HVNVYDLRNMSQPEQRRESSLKYQTRC-VRCYPNGTGYALSSVE  209 (342)
Q Consensus       139 ~~~~~~~~~~v~~~s~~~~~~~~~s~d~--------~v~iwd~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~s~~  209 (342)
                       +...   ..+..++++++.++.++.++        .|.+||  +++ . ..........+.. +.++ ++ .+++++.+
T Consensus       213 -l~~~---~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~  282 (347)
T 2gop_A          213 -MFEK---VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-V-MGILDEVDRGVGQAKIKD-GK-VYFTLFEE  282 (347)
T ss_dssp             -EEEE---ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-E-EESSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred             -eccC---cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCc-e-EeccccCCcccCCccEEc-Cc-EEEEEecC
Confidence             2221   23444577888888777543        577777  332 1 1111222334554 6777 77 77777888


Q ss_pred             CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeE-EEEeCCCceeeeccCCCCcc
Q 019384          210 GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFV-NVWDGNNKKRLYQYSKYPTS  287 (342)
Q Consensus       210 ~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I-~iWd~~~~~~~~~~~~~~~~  287 (342)
                      +...++ ++  .. ..  ..+..+         ...|.+++|+|  .++++++.+++. +||... ++ ...++.|...
T Consensus       283 ~~~~l~-~~--~g-~~--~~~~~~---------~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~  342 (347)
T 2gop_A          283 GSVNLY-IW--DG-EI--KPIAKG---------RHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYNDP  342 (347)
T ss_dssp             TEEEEE-EE--SS-SE--EEEECS---------SSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred             CcEEEE-Ec--CC-ce--EEEecC---------CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccHh
Confidence            877665 54  21 11  111111         12588899999  677777766654 677665 43 4456655543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.52  E-value=3.5e-12  Score=113.76  Aligned_cols=247  Identities=11%  Similarity=0.072  Sum_probs=149.7

Q ss_pred             CCCcEEEEECCCceeeeee-------ecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce-eecccCCcceeEEEEeC
Q 019384           39 WDKSVRLYDASANVLRGEF-------MHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSY  110 (342)
Q Consensus        39 ~Dgti~vwd~~~~~~~~~~-------~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~  110 (342)
                      .+++|.+||..+++....+       ........+.+..+...++...++.|.+||..+.+. ..+ ........+++++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i-~~~~~p~~i~~~~   93 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRI-TGFTSPRYIHFLS   93 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEE-ECCSSEEEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEc-CCCCCCcEEEEeC
Confidence            4899999999987754432       112345677775443344666678999999998875 334 2346688999988


Q ss_pred             CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCC---CCcEEEEeccCCeEEEEE--cCCeEEEEeCCCCCCccccccc
Q 019384          111 AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ---PERVYSLSLVGNRLVVAT--AGRHVNVYDLRNMSQPEQRRES  185 (342)
Q Consensus       111 ~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~---~~~v~~~s~~~~~~~~~s--~d~~v~iwd~~~~~~~~~~~~~  185 (342)
                      ++...++...++.|.+||+++....  ..+.....   ......+...++.++++.  .+++|.++|+.+.+.....   
T Consensus        94 ~g~lyv~~~~~~~v~~iD~~t~~~~--~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i---  168 (328)
T 3dsm_A           94 DEKAYVTQIWDYRIFIINPKTYEIT--GYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDEL---  168 (328)
T ss_dssp             TTEEEEEEBSCSEEEEEETTTTEEE--EEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEE---
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEE--EEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEE---
Confidence            8844445448999999998754321  11111110   001122333566666665  3789999999876432111   


Q ss_pred             ccceeeEEEEEeeCCceEEEEccCC--------eEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCe
Q 019384          186 SLKYQTRCVRCYPNGTGYALSSVEG--------RVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGT  257 (342)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~~s~~~--------~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~  257 (342)
                      ........+.+.|+++.++++..+.        ...+..+|..+.+....+.+.      .+    ...+.++|+|++++
T Consensus       169 ~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~------~g----~~p~~la~~~d~~~  238 (328)
T 3dsm_A          169 TIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK------LG----DWPSEVQLNGTRDT  238 (328)
T ss_dssp             ECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC------TT----CCCEEEEECTTSCE
T ss_pred             EcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC------CC----CCceeEEEecCCCE
Confidence            1122345677889888655554330        134567887543221111110      00    13678999999998


Q ss_pred             EEEecCCCeEEEEeCCCceeee-c-cCCCCcceEEEEECC-CCCEEEEE
Q 019384          258 FATGGCDGFVNVWDGNNKKRLY-Q-YSKYPTSIAALSFSR-DGRLLAVA  303 (342)
Q Consensus       258 l~sgs~Dg~I~iWd~~~~~~~~-~-~~~~~~~V~~v~~sp-dg~~las~  303 (342)
                      |..+..  +|.+||..+++... . +.........++++| +++++++.
T Consensus       239 lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          239 LYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             EEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             EEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence            877654  89999998876532 1 222245689999999 45555544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.52  E-value=1.9e-12  Score=128.22  Aligned_cols=247  Identities=10%  Similarity=-0.007  Sum_probs=151.4

Q ss_pred             CCCCCCCeEEEEEcCCCCeEEEEeCC-----CcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCc-------
Q 019384           15 GNPPSDGISNLRFSNHSDHLLVSSWD-----KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHT-------   82 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~~~~~l~s~s~D-----gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~-------   82 (342)
                      .+.+...+.+++|||||++||.++.+     .+|++||+.+++.+....+...+..++|++++.++.++.|..       
T Consensus       158 ~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          158 AKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             C----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC-------
T ss_pred             ccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccc
Confidence            34444468899999999999877654     469999999887655422322345788997744556666554       


Q ss_pred             -------EEEEEeccCce---eeccc--CCcceeEEEEeCCCCEEEEeeCCC-----cEEEEcCCCCCCc-ceeeeeecC
Q 019384           83 -------VRRLVFSHGKE---DILGK--HDAPVRCIEYSYAAGQVITGSWDK-----SLKCWDPRGASGQ-ERTLVGTYP  144 (342)
Q Consensus        83 -------i~~w~~~~~~~---~~~~~--h~~~V~~~~~~~~~~~l~sgs~D~-----~I~iWd~~~~~~~-~~~~~~~~~  144 (342)
                             |.+|++.++..   ..+..  |...+.++.|+|||+.|+..+.++     .|.+||+.++... .. .+....
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~  316 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT-ALIPDL  316 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE-EEECSS
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE-EecCCC
Confidence                   77888866552   23332  334588999999999887766544     8999998654211 12 222211


Q ss_pred             CCCcEEEEeccCCeEEEEEcC----CeEEEEeCCCCC-CcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeec
Q 019384          145 QPERVYSLSLVGNRLVVATAG----RHVNVYDLRNMS-QPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDL  219 (342)
Q Consensus       145 ~~~~v~~~s~~~~~~~~~s~d----~~v~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~  219 (342)
                      . .....++.+++.++..+.+    ..|.+||+.+.. .. ..........+..+++. ++..+++...++...+++++.
T Consensus       317 ~-~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~-~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~  393 (741)
T 1yr2_A          317 K-AQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRF-DTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL  393 (741)
T ss_dssp             S-SCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEE-EEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET
T ss_pred             C-ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCcccc-EEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC
Confidence            1 1222345678888877764    359999987642 11 11111222234455555 555667777888888888875


Q ss_pred             hhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEE----EecCCCeEEEEeCCCce
Q 019384          220 SEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFA----TGGCDGFVNVWDGNNKK  276 (342)
Q Consensus       220 ~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~----sgs~Dg~I~iWd~~~~~  276 (342)
                      ... ..+.  +..+        ....+..++++|++..|+    +....++|++||+.+++
T Consensus       394 ~g~-~~~~--l~~~--------~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          394 DGK-PAGA--VSLP--------GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             TSC-EEEE--CBCS--------SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CCC-ceee--ccCC--------CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            321 1111  1110        012477889999988665    33456799999998765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.50  E-value=1.3e-12  Score=127.39  Aligned_cols=240  Identities=13%  Similarity=0.049  Sum_probs=142.0

Q ss_pred             EEEEc--CCCCe-EEEEeC-CCcEEEEECC--C-ceeeeeee-----cCCceEEEEEeCCCCe-EEEecC----------
Q 019384           24 NLRFS--NHSDH-LLVSSW-DKSVRLYDAS--A-NVLRGEFM-----HGGPVLDCCFHDDSSG-FSASAD----------   80 (342)
Q Consensus        24 ~l~fs--~~~~~-l~s~s~-Dgti~vwd~~--~-~~~~~~~~-----h~~~V~~~~~~~~~~~-~s~s~D----------   80 (342)
                      +.+|+  |||++ |+.++. +..|.+|++.  + +.......     |...+.+++|+|+++. +.++.|          
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence            55565  99998 775543 4566666665  3 44444433     5677889999988764 566665          


Q ss_pred             CcEEEEEecc------Cceeecc-cCCcceeEEEEeCCCCEEEEeeCCC--------cEEEEcCC-CCCC-cceeeeeec
Q 019384           81 HTVRRLVFSH------GKEDILG-KHDAPVRCIEYSYAAGQVITGSWDK--------SLKCWDPR-GASG-QERTLVGTY  143 (342)
Q Consensus        81 ~~i~~w~~~~------~~~~~~~-~h~~~V~~~~~~~~~~~l~sgs~D~--------~I~iWd~~-~~~~-~~~~~~~~~  143 (342)
                      ..|.+|++.+      +....+. .+...+..++|+|||+.|+.++.++        .|.+||+. ++.. ........+
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~  240 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP  240 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred             eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence            4788999887      5655565 6667888999999999998877653        79999987 3310 112222221


Q ss_pred             CCCCcEEEEeccCCeEEEEEcCC--eEEEEeCCCCCCcccccccccce-------eeEEEEEeeCCceEEEEccCCeEEE
Q 019384          144 PQPERVYSLSLVGNRLVVATAGR--HVNVYDLRNMSQPEQRRESSLKY-------QTRCVRCYPNGTGYALSSVEGRVAM  214 (342)
Q Consensus       144 ~~~~~v~~~s~~~~~~~~~s~d~--~v~iwd~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~s~~~~~~i  214 (342)
                      ........++.+++.++++..++  .|.+||+.+++.. .........       ....++++|++..++++.. +...+
T Consensus       241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l  318 (662)
T 3azo_A          241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL  318 (662)
T ss_dssp             TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred             CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-ecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence            22222344566677566666667  5666666544221 111110000       0345778889888888887 88877


Q ss_pred             EEeechhhhhcccceeeeEEecCCCCceeeeeeEE-EEcCCCCeEEEecCCCe--EEEEeCCCcee
Q 019384          215 EFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAI-AFHPIYGTFATGGCDGF--VNVWDGNNKKR  277 (342)
Q Consensus       215 ~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v-~~sp~~~~l~sgs~Dg~--I~iWd~~~~~~  277 (342)
                      +.+|..... .  ..+..|.         ..+..+ +++++.-.+++++.+..  |++||..+++.
T Consensus       319 ~~~d~~~~~-~--~~l~~~~---------~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          319 GILDPESGE-L--VDAAGPW---------TEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA  372 (662)
T ss_dssp             EEEETTTTE-E--EECCSSC---------CEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEECCCCc-E--EEecCCC---------CeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence            777764321 1  1122221         135555 55443334455666654  55556666543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.50  E-value=9.3e-12  Score=108.34  Aligned_cols=238  Identities=7%  Similarity=0.027  Sum_probs=145.1

Q ss_pred             cCCceEEEEEeCCCCeE-EEecCCcEEEEEeccCceeecc------cCCcceeEEEEe-CCCCEEEEeeC-CCcEEEEcC
Q 019384           59 HGGPVLDCCFHDDSSGF-SASADHTVRRLVFSHGKEDILG------KHDAPVRCIEYS-YAAGQVITGSW-DKSLKCWDP  129 (342)
Q Consensus        59 h~~~V~~~~~~~~~~~~-s~s~D~~i~~w~~~~~~~~~~~------~h~~~V~~~~~~-~~~~~l~sgs~-D~~I~iWd~  129 (342)
                      +-..+.++++.+++.++ +.+.++.|.+|+........+.      +|...+..+++. +++.++++... ++.|.+||.
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~  107 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  107 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC
Confidence            44567899998777765 4467889999987643333332      345678899995 56655555533 899999994


Q ss_pred             CCCCCcceeeeeecCCCCcEEEE--eccCCeEEEEEcCCeEEEEeCCCCCCccccccc-ccceeeEEEEEeeCCceEEEE
Q 019384          130 RGASGQERTLVGTYPQPERVYSL--SLVGNRLVVATAGRHVNVYDLRNMSQPEQRRES-SLKYQTRCVRCYPNGTGYALS  206 (342)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~v~~~--s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~  206 (342)
                      . +.  ....+.. ........+  +.+++.+++...++.|.+||.... .. ..... .....+..+++.+++..+++.
T Consensus       108 ~-g~--~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~-~~~~~~~~~~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          108 Y-GQ--FVRKFGA-TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VL-HKFGCSKHLEFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             T-SC--EEEEECT-TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EE-EEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             C-Cc--EEEEecC-ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EE-EEeCCCCccCCcEEEEECCCCCEEEEE
Confidence            3 21  1111211 111223344  445555555566789999996432 11 11111 111246788999998866666


Q ss_pred             ccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCC-eEEEEeCCCceeeeccCCC-
Q 019384          207 SVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDG-FVNVWDGNNKKRLYQYSKY-  284 (342)
Q Consensus       207 s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg-~I~iWd~~~~~~~~~~~~~-  284 (342)
                      ..++.+  ++||.... ...  .+..+       .....+..++++|+|.++++...++ .|++||.. ++.+..+..+ 
T Consensus       182 ~~~~~i--~~~~~~g~-~~~--~~~~~-------g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~  248 (286)
T 1q7f_A          182 NRAHCV--KVFNYEGQ-YLR--QIGGE-------GITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKV  248 (286)
T ss_dssp             GGGTEE--EEEETTCC-EEE--EESCT-------TTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESS
T ss_pred             CCCCEE--EEEcCCCC-EEE--EEccC-------CccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccC
Confidence            666665  45776321 111  11110       0012367899999999888888886 99999965 4555544433 


Q ss_pred             -CcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          285 -PTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       285 -~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                       ...+.+++++|||+++++ +.+.           .|.+|+..+
T Consensus       249 ~~~~~~~i~~~~~g~l~vs-~~~~-----------~v~v~~~~~  280 (286)
T 1q7f_A          249 KHAQCFDVALMDDGSVVLA-SKDY-----------RLYIYRYVQ  280 (286)
T ss_dssp             CCSCEEEEEEETTTEEEEE-ETTT-----------EEEEEECSC
T ss_pred             CCCcceeEEECCCCcEEEE-CCCC-----------eEEEEEccc
Confidence             235789999999997776 4322           588887653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.49  E-value=1.2e-11  Score=110.40  Aligned_cols=243  Identities=8%  Similarity=-0.003  Sum_probs=151.5

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEe-cCCcEEEEEeccCcee-ec
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSAS-ADHTVRRLVFSHGKED-IL   96 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s-~D~~i~~w~~~~~~~~-~~   96 (342)
                      ......++++ ++++.++...+++|.+||..+++....+........++++++++++.+. .++.|.+||..+.+.. .+
T Consensus        43 g~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           43 GDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             BSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             CccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence            3556788885 4556666777899999999988877666666778899997667776655 7899999999887643 22


Q ss_pred             ccCC-----cceeEEEEeCCCCEEEEee--CCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC----
Q 019384           97 GKHD-----APVRCIEYSYAAGQVITGS--WDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG----  165 (342)
Q Consensus        97 ~~h~-----~~V~~~~~~~~~~~l~sgs--~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d----  165 (342)
                      ....     .....+++  +++.|+.+.  .+++|.++|+++....  ..+.....+ .-+.++.+++.++++..+    
T Consensus       122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~--~~i~~g~~p-~~i~~~~dG~l~v~~~~~~~~~  196 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVV--DELTIGIQP-TSLVMDKYNKMWTITDGGYEGS  196 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEE--EEEECSSCB-CCCEECTTSEEEEEBCCBCTTC
T ss_pred             EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEE--EEEEcCCCc-cceEEcCCCCEEEEECCCccCC
Confidence            2111     14556777  345554444  4899999998764321  112111111 123455555544444433    


Q ss_pred             ------CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCC
Q 019384          166 ------RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAG  239 (342)
Q Consensus       166 ------~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~  239 (342)
                            +.|.++|..+.+... ............++++|+++.++++..    .++.||...........+..+      
T Consensus       197 ~~~~~~~~v~~id~~t~~v~~-~~~~~~g~~p~~la~~~d~~~lyv~~~----~v~~~d~~t~~~~~~~~~~~~------  265 (328)
T 3dsm_A          197 PYGYEAPSLYRIDAETFTVEK-QFKFKLGDWPSEVQLNGTRDTLYWINN----DIWRMPVEADRVPVRPFLEFR------  265 (328)
T ss_dssp             SSCBCCCEEEEEETTTTEEEE-EEECCTTCCCEEEEECTTSCEEEEESS----SEEEEETTCSSCCSSCSBCCC------
T ss_pred             ccccCCceEEEEECCCCeEEE-EEecCCCCCceeEEEecCCCEEEEEcc----EEEEEECCCCceeeeeeecCC------
Confidence                  689999998764221 111111225678999999888877654    356788754322111101100      


Q ss_pred             CceeeeeeEEEEcCC-CCeEEEe----cCCCeEEEEeCCCceeeeccC
Q 019384          240 RDIVYPVNAIAFHPI-YGTFATG----GCDGFVNVWDGNNKKRLYQYS  282 (342)
Q Consensus       240 ~~~~~~v~~v~~sp~-~~~l~sg----s~Dg~I~iWd~~~~~~~~~~~  282 (342)
                         ......++++|+ +..+++.    ..+++|.+||.+ ++.+.++.
T Consensus       266 ---~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          266 ---DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             ---SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred             ---CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence               113678999995 5556666    678999999998 77666553

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.48  E-value=2.4e-11  Score=106.89  Aligned_cols=241  Identities=12%  Similarity=0.118  Sum_probs=150.8

Q ss_pred             CCeEEEEEcCCCCeEEE-------EeCCCcEEEEECCCceeeeeee-----cCCceEEEEEeCC-CCeEEEecCCcEEEE
Q 019384           20 DGISNLRFSNHSDHLLV-------SSWDKSVRLYDASANVLRGEFM-----HGGPVLDCCFHDD-SSGFSASADHTVRRL   86 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s-------~s~Dgti~vwd~~~~~~~~~~~-----h~~~V~~~~~~~~-~~~~s~s~D~~i~~w   86 (342)
                      ....+++|+++++++++       +..++.|.+||..+++......     +.+.+.++++.++ +.++.++....+.+|
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~   97 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEE
Confidence            45689999999988888       6788999999987776544332     4467889999877 777777666678889


Q ss_pred             EeccCceeec-cc-----CCcceeEEEEeCCCCEEEEeeCC---------------CcEEEEcCCCCCCcceeeeeecCC
Q 019384           87 VFSHGKEDIL-GK-----HDAPVRCIEYSYAAGQVITGSWD---------------KSLKCWDPRGASGQERTLVGTYPQ  145 (342)
Q Consensus        87 ~~~~~~~~~~-~~-----h~~~V~~~~~~~~~~~l~sgs~D---------------~~I~iWd~~~~~~~~~~~~~~~~~  145 (342)
                      +.. ++...+ ..     ....+.++++.+++.+.++...+               +.|..||.. +.  ..........
T Consensus        98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~  173 (314)
T 1pjx_A           98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQVDTAFQF  173 (314)
T ss_dssp             ETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEEEEEEESS
T ss_pred             eCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC--EEEeccCCCC
Confidence            887 554333 21     22458899999999877776655               567777754 21  1111111111


Q ss_pred             CCcEEEEe----ccCCeEEEE-EcCCeEEEEeCCC-CCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeec
Q 019384          146 PERVYSLS----LVGNRLVVA-TAGRHVNVYDLRN-MSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDL  219 (342)
Q Consensus       146 ~~~v~~~s----~~~~~~~~~-s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~  219 (342)
                       ..-..++    .+++.++.+ +.++.|.+||+.. +.             ....                  .+ +...
T Consensus       174 -~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~-------------~~~~------------------~~-~~~~  220 (314)
T 1pjx_A          174 -PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK-------------IENK------------------KV-WGHI  220 (314)
T ss_dssp             -EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE-------------EEEE------------------EE-EEEC
T ss_pred             -cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCc-------------cccc------------------eE-EEEC
Confidence             1122334    333344433 3456777777531 10             0000                  00 0000


Q ss_pred             hhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCE
Q 019384          220 SEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRL  299 (342)
Q Consensus       220 ~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~  299 (342)
                                 ..+.        ...+..++++++|.++++...++.|.+||.++++.+..+..+...+.+++|+|||++
T Consensus       221 -----------~~~~--------~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~  281 (314)
T 1pjx_A          221 -----------PGTH--------EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKT  281 (314)
T ss_dssp             -----------CCCS--------SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSE
T ss_pred             -----------CCCC--------CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCE
Confidence                       0000        012457899999988888778899999999877666555555578999999999996


Q ss_pred             EEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384          300 LAVASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       300 las~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                      |.+++...          ..|..++++
T Consensus       282 l~v~~~~~----------~~l~~~~~~  298 (314)
T 1pjx_A          282 IFVTEHEN----------NAVWKFEWQ  298 (314)
T ss_dssp             EEEEETTT----------TEEEEEECS
T ss_pred             EEEEeCCC----------CeEEEEeCC
Confidence            66665432          247777664

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.46  E-value=2.3e-11  Score=119.49  Aligned_cols=263  Identities=8%  Similarity=-0.091  Sum_probs=154.2

Q ss_pred             cCCCCeEEEEeCCC---cEEEEEC--CCceeeeee-------ecCCceEEEEEeCCCCeEE--E----ecCCcEEEEEec
Q 019384           28 SNHSDHLLVSSWDK---SVRLYDA--SANVLRGEF-------MHGGPVLDCCFHDDSSGFS--A----SADHTVRRLVFS   89 (342)
Q Consensus        28 s~~~~~l~s~s~Dg---ti~vwd~--~~~~~~~~~-------~h~~~V~~~~~~~~~~~~s--~----s~D~~i~~w~~~   89 (342)
                      +|+|++++-...++   .-.||..  .++......       +|...+.++.|+|+++.+.  .    +.+.+|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            37888887666554   4556654  344332222       2444688999999887643  2    224579999999


Q ss_pred             cCceeecccCCcce--eEEEEeCCCCEEEEeeCCCc-------------EEEEcCCCCCCcceeeeeecCCCCc--EEEE
Q 019384           90 HGKEDILGKHDAPV--RCIEYSYAAGQVITGSWDKS-------------LKCWDPRGASGQERTLVGTYPQPER--VYSL  152 (342)
Q Consensus        90 ~~~~~~~~~h~~~V--~~~~~~~~~~~l~sgs~D~~-------------I~iWd~~~~~~~~~~~~~~~~~~~~--v~~~  152 (342)
                      +++... ..+...+  .+++|+||++.|+.++.|..             |++|++.++............+...  ...+
T Consensus       156 tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~  234 (695)
T 2bkl_A          156 SGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL  234 (695)
T ss_dssp             TCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred             CCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence            877431 1122222  68999999999999988876             9999987643221122222112222  3456


Q ss_pred             eccCCeEEEEEcCC----eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc-C-CeEEEEEeechhhhhcc
Q 019384          153 SLVGNRLVVATAGR----HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV-E-GRVAMEFFDLSEASQAK  226 (342)
Q Consensus       153 s~~~~~~~~~s~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~-~~~~i~~~d~~~~~~~~  226 (342)
                      +.+++.+++.+.++    .|.+||..+...  ........ ......+ +++. +++.+. + ....|+.||........
T Consensus       235 SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~~-~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~  309 (695)
T 2bkl_A          235 SRDGKYLFVYILRGWSENDVYWKRPGEKDF--RLLVKGVG-AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS  309 (695)
T ss_dssp             CTTSCCEEEEEEETTTEEEEEEECTTCSSC--EEEEECSS-CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred             CCCCCEEEEEEeCCCCceEEEEEcCCCCce--EEeecCCC-ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC
Confidence            66777787777665    566776543321  11111111 1223333 6777 555543 2 23456778875432110


Q ss_pred             cceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC-CceeeeccCCC-CcceEEEEECCCCCEEEEEE
Q 019384          227 KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN-NKKRLYQYSKY-PTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       227 ~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~-~~~~~~~~~~~-~~~V~~v~~spdg~~las~s  304 (342)
                      ...+..|..       ...+..++++ ++.++++...|+..+||... +++.+..+..+ ...|..++++||+..|+...
T Consensus       310 ~~~l~~~~~-------~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~  381 (695)
T 2bkl_A          310 WKEIVPEDS-------SASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVF  381 (695)
T ss_dssp             CEEEECCCS-------SCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEE
T ss_pred             CeEEecCCC-------CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEE
Confidence            111211110       1146778887 67788999999998888654 34455555544 56788999999998666443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.46  E-value=1.9e-12  Score=117.52  Aligned_cols=243  Identities=10%  Similarity=-0.043  Sum_probs=140.7

Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee-cCCceEE-------------------EEEeCCCCeE-EE----
Q 019384           23 SNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLD-------------------CCFHDDSSGF-SA----   77 (342)
Q Consensus        23 ~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~-h~~~V~~-------------------~~~~~~~~~~-s~----   77 (342)
                      ..+.|+|||++|+.++.++.|++||+.+++...... +.+....                   +.|++++..+ .+    
T Consensus        84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~  163 (396)
T 3c5m_A           84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH  163 (396)
T ss_dssp             TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred             ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence            347899999999999999999999998876544433 3332222                   2344444432 11    


Q ss_pred             -ecCCcEEEEEeccCceeecccCCcceeEEEEeC-CCCEEEEeeCC------CcEEEEcCCCCCCcceeeeeecCCCCcE
Q 019384           78 -SADHTVRRLVFSHGKEDILGKHDAPVRCIEYSY-AAGQVITGSWD------KSLKCWDPRGASGQERTLVGTYPQPERV  149 (342)
Q Consensus        78 -s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~sgs~D------~~I~iWd~~~~~~~~~~~~~~~~~~~~v  149 (342)
                       ..+..|.+|++.+++...+..+...+..++|+| +++.|+..+.+      ..|.+||+.+...  .. +........+
T Consensus       164 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~--~~-l~~~~~~~~~  240 (396)
T 3c5m_A          164 TNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV--RK-IKEHAEGESC  240 (396)
T ss_dssp             TCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC--EE-SSCCCTTEEE
T ss_pred             CCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce--eE-eeccCCCccc
Confidence             345578888988877655556777899999999 77777665543      3688888754321  11 1111101123


Q ss_pred             --EEEeccCCeEEEEEcC-----CeEEEEeCCCCCCcccccccccceeeEEEEEee-CCceEEEEcc-------------
Q 019384          150 --YSLSLVGNRLVVATAG-----RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYP-NGTGYALSSV-------------  208 (342)
Q Consensus       150 --~~~s~~~~~~~~~s~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~s~-------------  208 (342)
                        ..++.+++.++.++.+     +.|.+||+.+++.....   .... .. +.++| +++.++....             
T Consensus       241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~---~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~  315 (396)
T 3c5m_A          241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM---VMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYN  315 (396)
T ss_dssp             EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE---ECCS-EE-EEEECSSSSEEEEEECCC----------C
T ss_pred             cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee---eCCC-CC-CCccCCCCceEEEecCCcceeeccccccc
Confidence              3566667777776554     34999999876422111   1111 12 67888 9987776432             


Q ss_pred             -CCeEEEEEeechhhhhcccceeeeEEecCCC--CceeeeeeEEEEcCCCCeEEEecC-CCeEEEE--eCCCce
Q 019384          209 -EGRVAMEFFDLSEASQAKKYAFKCHRKSEAG--RDIVYPVNAIAFHPIYGTFATGGC-DGFVNVW--DGNNKK  276 (342)
Q Consensus       209 -~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~--~~~~~~v~~v~~sp~~~~l~sgs~-Dg~I~iW--d~~~~~  276 (342)
                       ++...+++||......   ..+..+......  .+....+..++|+|+|+.|+.++. ++...||  ++.++.
T Consensus       316 ~~~~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~  386 (396)
T 3c5m_A          316 IENDPFLYVLNTKAKSA---QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY  386 (396)
T ss_dssp             CCCCCEEEEEETTTTBC---CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred             cCCCCcEEEEecccCce---EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence             2334677898754321   122222110000  000001345789999998876654 5555555  544443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.45  E-value=2.1e-10  Score=109.51  Aligned_cols=277  Identities=14%  Similarity=0.027  Sum_probs=164.3

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECC--CceeeeeeecCCceEEEEEe----CCCCe-EEE-ecCCcEEEEEecc
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDAS--ANVLRGEFMHGGPVLDCCFH----DDSSG-FSA-SADHTVRRLVFSH   90 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~--~~~~~~~~~h~~~V~~~~~~----~~~~~-~s~-s~D~~i~~w~~~~   90 (342)
                      ...+..++|||||++|.+++.|+.|.+||+.  +.+....+........+.|+    ++++. +++ -.++.+.++|..+
T Consensus       196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            3467899999999999999999999999995  55555555445567889998    47754 444 4568899999877


Q ss_pred             Ccee-ec--cc--------C-CcceeEEEEeCCCCE-EEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC
Q 019384           91 GKED-IL--GK--------H-DAPVRCIEYSYAAGQ-VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN  157 (342)
Q Consensus        91 ~~~~-~~--~~--------h-~~~V~~~~~~~~~~~-l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~  157 (342)
                      .+.. .+  .+        | ...+..+..++++.. +++...++.|.++|...........+.. .....-..++.++.
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~-~~~~~d~~~~pdgr  354 (567)
T 1qks_A          276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA-ERFLHDGGLDGSHR  354 (567)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC-CSSEEEEEECTTSC
T ss_pred             CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeec-cccccCceECCCCC
Confidence            6632 11  11        2 225778888887654 4566677999999976432111111111 11111235667777


Q ss_pred             eEEEEE-cCCeEEEEeCCCCCCcccccc-cccceeeEEE-EEeeCCceEEEEc--cCCeEEEEEeechhhhhc-ccceee
Q 019384          158 RLVVAT-AGRHVNVYDLRNMSQPEQRRE-SSLKYQTRCV-RCYPNGTGYALSS--VEGRVAMEFFDLSEASQA-KKYAFK  231 (342)
Q Consensus       158 ~~~~~s-~d~~v~iwd~~~~~~~~~~~~-~~~~~~~~~v-~~~~~~~~~~~~s--~~~~~~i~~~d~~~~~~~-~~~~~~  231 (342)
                      +++++. .+++|.++|+.+++....... ...+...... .++|++..+++.+  .++.+  .++|....... ..+...
T Consensus       355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~V--svid~~~~~~~~~~~kvv  432 (567)
T 1qks_A          355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSV--ALIGTDPEGHPDNAWKIL  432 (567)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEE--EEEECCTTTCTTTBTSEE
T ss_pred             EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeE--EEecCCCCCCccccCEEE
Confidence            766554 668999999988643211111 0111100111 2577755554433  33554  56887542110 111111


Q ss_pred             eEEecCCCCceeeeeeEEEEcCCCCeEEEecC-------CCeEEEEeCCCc---------eeee-----ccCCCCcceEE
Q 019384          232 CHRKSEAGRDIVYPVNAIAFHPIYGTFATGGC-------DGFVNVWDGNNK---------KRLY-----QYSKYPTSIAA  290 (342)
Q Consensus       232 ~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~-------Dg~I~iWd~~~~---------~~~~-----~~~~~~~~V~~  290 (342)
                      ...+.. +.    .-.-+++||++++|+....       .++|.|+|+.+.         +.+.     .+..-..++..
T Consensus       433 ~~i~~~-g~----g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  507 (567)
T 1qks_A          433 DSFPAL-GG----GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQ  507 (567)
T ss_dssp             EEEECS-CS----CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEE
T ss_pred             EEEecC-CC----CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEe
Confidence            111110 10    1123678999999887652       459999998866         2221     12222457999


Q ss_pred             EEECCCCCEEEEE
Q 019384          291 LSFSRDGRLLAVA  303 (342)
Q Consensus       291 v~~spdg~~las~  303 (342)
                      ++|+|||+++-.+
T Consensus       508 ~~~~~~G~~~~~s  520 (567)
T 1qks_A          508 GEFNKDGTEVWFS  520 (567)
T ss_dssp             EEECTTSSEEEEE
T ss_pred             eeECCCCCEEEEE
Confidence            9999999987765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.44  E-value=7.6e-10  Score=96.26  Aligned_cols=263  Identities=8%  Similarity=-0.011  Sum_probs=165.1

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee--ecCCceEEEEEeCCCCeEEEec-CCcEEEEEeccCceee
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF--MHGGPVLDCCFHDDSSGFSASA-DHTVRRLVFSHGKEDI   95 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~--~h~~~V~~~~~~~~~~~~s~s~-D~~i~~w~~~~~~~~~   95 (342)
                      ...+.+++++++|+..++...++.|.+||.. ++.....  .+...+.++++.+++.++.+.. ++.|..++.. +....
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~   96 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE   96 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE
Confidence            4688999999999988887788999999988 5443321  2335688899987777765554 6778888876 44332


Q ss_pred             c--ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeEEEE
Q 019384           96 L--GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVY  171 (342)
Q Consensus        96 ~--~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v~iw  171 (342)
                      +  ......+.++++.+++..+++...++.|..+|.. +..  . .+...........+..  +++..++...++.|..+
T Consensus        97 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~--~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  172 (300)
T 2qc5_A           97 YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI--Y-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI  172 (300)
T ss_dssp             EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE--E-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE--E-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence            2  2234678999999988888877778899999975 221  1 1111111223444444  44444444446789999


Q ss_pred             eCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEE
Q 019384          172 DLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF  251 (342)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  251 (342)
                      |. ++.... .........+..+.+.+++..+++....+.+  ..+|.. . ....+.+..      .   ...+.++++
T Consensus       173 ~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i--~~~~~~-g-~~~~~~~~~------~---~~~~~~i~~  237 (300)
T 2qc5_A          173 TN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKI--GRITTT-G-EISEYDIPT------P---NARPHAITA  237 (300)
T ss_dssp             CT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEE--EEECTT-C-CEEEEECSS------T---TCCEEEEEE
T ss_pred             CC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEE--EEEcCC-C-cEEEEECCC------C---CCCceEEEE
Confidence            98 432211 1111111246678888888765555555544  457752 1 111111110      0   123678999


Q ss_pred             cCCCCeEEEecCCCeEEEEeCCCceee-eccCCCCcceEEEEECCCCCEEEEE
Q 019384          252 HPIYGTFATGGCDGFVNVWDGNNKKRL-YQYSKYPTSIAALSFSRDGRLLAVA  303 (342)
Q Consensus       252 sp~~~~l~sgs~Dg~I~iWd~~~~~~~-~~~~~~~~~V~~v~~spdg~~las~  303 (342)
                      +++|..+++...++.|..||.. ++.. ..+......+.+++++++|+++++.
T Consensus       238 d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~  289 (300)
T 2qc5_A          238 GKNSEIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFAL  289 (300)
T ss_dssp             CSTTCEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEEC
T ss_pred             CCCCCEEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEc
Confidence            9999877777778999999984 4322 2233344568999999999977654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.42  E-value=1.9e-10  Score=102.23  Aligned_cols=236  Identities=11%  Similarity=0.075  Sum_probs=141.8

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee-ecCCceEEEEEeCCCCeEEEec-C----CcEEEEEeccC
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF-MHGGPVLDCCFHDDSSGFSASA-D----HTVRRLVFSHG   91 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~-~h~~~V~~~~~~~~~~~~s~s~-D----~~i~~w~~~~~   91 (342)
                      +...+.+++|++++++++++..++.|.+||..+++..... .+...+.++++.+++.++.++. +    +.|.+|+..++
T Consensus        43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~  122 (333)
T 2dg1_A           43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  122 (333)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence            4457789999999998888889999999999887665543 4667899999998887765554 4    47888888776


Q ss_pred             cee-ecc--cCCcceeEEEEeCCCCEEEEeeC------CCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEE
Q 019384           92 KED-ILG--KHDAPVRCIEYSYAAGQVITGSW------DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVA  162 (342)
Q Consensus        92 ~~~-~~~--~h~~~V~~~~~~~~~~~l~sgs~------D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~  162 (342)
                      ... .+.  .+...+.+++++|++..+++...      .+.|..+|.++..  ......... ....+.++.+++.++.+
T Consensus       123 ~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~-~~~~i~~~~dg~~l~v~  199 (333)
T 2dg1_A          123 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNIS-VANGIALSTDEKVLWVT  199 (333)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEES-SEEEEEECTTSSEEEEE
T ss_pred             EEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE--EEEeecCCC-cccceEECCCCCEEEEE
Confidence            643 222  34567899999999987776654      2456666654321  111111111 11223445555555444


Q ss_pred             -EcCCeEEEEeCCCC-CCccc---ccccccc--eeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEe
Q 019384          163 -TAGRHVNVYDLRNM-SQPEQ---RRESSLK--YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK  235 (342)
Q Consensus       163 -s~d~~v~iwd~~~~-~~~~~---~~~~~~~--~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~  235 (342)
                       +.++.|.+||+... .....   .......  ..+..+++.+++..++....++.+  .+||.. ......+  ..+..
T Consensus       200 ~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v--~~~d~~-g~~~~~~--~~~~~  274 (333)
T 2dg1_A          200 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRV--LVFNKR-GYPIGQI--LIPGR  274 (333)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEE--EEECTT-SCEEEEE--ECTTG
T ss_pred             eCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEE--EEECCC-CCEEEEE--EcCCC
Confidence             45689999998642 11110   0000011  245678888998866665555654  457763 2111111  11000


Q ss_pred             cCCCCceeeeeeEEEEcCCCCeEEEecCC
Q 019384          236 SEAGRDIVYPVNAIAFHPIYGTFATGGCD  264 (342)
Q Consensus       236 ~~~~~~~~~~v~~v~~sp~~~~l~sgs~D  264 (342)
                         ...+...+.+++|+|+++.|+.++.+
T Consensus       275 ---~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          275 ---DEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             ---GGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             ---ccccccCcceEEECCCCCEEEEEeCc
Confidence               00011136789999998777655544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.40  E-value=1.2e-10  Score=101.21  Aligned_cols=212  Identities=10%  Similarity=-0.046  Sum_probs=134.0

Q ss_pred             CCCCeEEEEeCCCcEEEEECCCceeeeeee-cC-CceEEEEEeCCCCeEEEecCCcEEEEEeccCce-eecccC-Cccee
Q 019384           29 NHSDHLLVSSWDKSVRLYDASANVLRGEFM-HG-GPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-DILGKH-DAPVR  104 (342)
Q Consensus        29 ~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~-h~-~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~-~~~~~h-~~~V~  104 (342)
                      ..+++|++++.|+.|.+||..+++.+..+. +. ..+.++.+.+++.++. +.++.+..|+. +++. -.+..+ ...+.
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            456889999999999999998887666554 33 3688899998888776 56788888887 5542 223322 34688


Q ss_pred             EEEEeCCCCEEEEeeC-CCcEEEEcCCCCCCcceeeeeecC------CCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCC
Q 019384          105 CIEYSYAAGQVITGSW-DKSLKCWDPRGASGQERTLVGTYP------QPERVYSLSLVGNRLVVATAGRHVNVYDLRNMS  177 (342)
Q Consensus       105 ~~~~~~~~~~l~sgs~-D~~I~iWd~~~~~~~~~~~~~~~~------~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~  177 (342)
                      ++.+.++++.+++.+. ++.|..+|.. +..  ...+....      ..........+++.+++.+.++.|..||.. + 
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~--l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G-  155 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNMK-GEV--LSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G-  155 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECTT-SCE--EEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeCC-CCE--EEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-
Confidence            9999999999988777 6677777752 111  11110000      000011222333344433334444444432 1 


Q ss_pred             CcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCe
Q 019384          178 QPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGT  257 (342)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~  257 (342)
                                                                   +  ..+.+..+          ..+.++.+.++|+.
T Consensus       156 ---------------------------------------------~--~~w~~~~~----------~~~~~~~~~~~g~~  178 (276)
T 3no2_A          156 ---------------------------------------------Q--LLNSVKLS----------GTPFSSAFLDNGDC  178 (276)
T ss_dssp             ---------------------------------------------C--EEEEEECS----------SCCCEEEECTTSCE
T ss_pred             ---------------------------------------------C--EEEEEECC----------CCccceeEcCCCCE
Confidence                                                         1  11111110          02345677889999


Q ss_pred             EEEecCCCeEEEEeCCCceeeeccCCC------CcceEEEEECCCCCEEEEEE
Q 019384          258 FATGGCDGFVNVWDGNNKKRLYQYSKY------PTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       258 l~sgs~Dg~I~iWd~~~~~~~~~~~~~------~~~V~~v~~spdg~~las~s  304 (342)
                      |++++.++.|..+|.++++.+.++...      ...+..++..++|.++++..
T Consensus       179 ~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          179 LVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            999998899999999988887766422      23478999999999888764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.39  E-value=5.1e-11  Score=117.89  Aligned_cols=263  Identities=14%  Similarity=0.015  Sum_probs=151.0

Q ss_pred             cCCCCeEEEEeCCCc---EEEEECC-----Cceeeeee-------ecCCceEEEEEeCCCCeE-EEec-C----CcEEEE
Q 019384           28 SNHSDHLLVSSWDKS---VRLYDAS-----ANVLRGEF-------MHGGPVLDCCFHDDSSGF-SASA-D----HTVRRL   86 (342)
Q Consensus        28 s~~~~~l~s~s~Dgt---i~vwd~~-----~~~~~~~~-------~h~~~V~~~~~~~~~~~~-s~s~-D----~~i~~w   86 (342)
                      +|+|++++-...++.   -.||...     ++.....+       .|...+.++.|+|+++.+ .++. +    ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            388998886665543   5666643     33322221       233367889999888754 3332 2    359999


Q ss_pred             EeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCc--------------EEEEcCCCCCCcceeeeeecCCCCcE--E
Q 019384           87 VFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKS--------------LKCWDPRGASGQERTLVGTYPQPERV--Y  150 (342)
Q Consensus        87 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~--------------I~iWd~~~~~~~~~~~~~~~~~~~~v--~  150 (342)
                      |+.+++......+...+..++|+|| +.|+.++.|+.              |.+|++.++................+  .
T Consensus       195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~  273 (741)
T 1yr2_A          195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA  273 (741)
T ss_dssp             ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence            9988875332222223467899999 88888777654              88999865432112222221121123  3


Q ss_pred             EEeccCCeEEEEEcCC-----eEEEEeCCCCCCc-ccccccccceeeEEEEEeeCCceEEEEccCC--eEEEEEeechhh
Q 019384          151 SLSLVGNRLVVATAGR-----HVNVYDLRNMSQP-EQRRESSLKYQTRCVRCYPNGTGYALSSVEG--RVAMEFFDLSEA  222 (342)
Q Consensus       151 ~~s~~~~~~~~~s~d~-----~v~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~--~~~i~~~d~~~~  222 (342)
                      .++.+++.++..+.++     .|.+||+.++... .......... .... ++|+++.+++.+..+  ...|+.||....
T Consensus       274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA-QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS-CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc-eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            4566777777777544     7999998765111 1111111111 1222 358888877776432  345677887532


Q ss_pred             hhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCC-CceeeeccCC-CCcceEEEEECCCCCEE
Q 019384          223 SQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGN-NKKRLYQYSK-YPTSIAALSFSRDGRLL  300 (342)
Q Consensus       223 ~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~-~~~~~~~~~~-~~~~V~~v~~spdg~~l  300 (342)
                      . .....+..+..        ..+..++++ ++.++++...|+..+||... +++.+..+.. ....|..++++||+..|
T Consensus       352 ~-~~~~~l~~~~~--------~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l  421 (741)
T 1yr2_A          352 T-PRFDTVVPESK--------DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHA  421 (741)
T ss_dssp             S-CEEEEEECCCS--------SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCE
T ss_pred             c-cccEEEecCCC--------CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEE
Confidence            1 00011111111        135667777 56678888999988877544 3445555553 35678999999999865


Q ss_pred             EEE
Q 019384          301 AVA  303 (342)
Q Consensus       301 as~  303 (342)
                      +..
T Consensus       422 ~~~  424 (741)
T 1yr2_A          422 YLS  424 (741)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.39  E-value=2.4e-10  Score=109.13  Aligned_cols=265  Identities=13%  Similarity=0.084  Sum_probs=159.7

Q ss_pred             cCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEec--cCcee-ecccCCcce
Q 019384           28 SNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFS--HGKED-ILGKHDAPV  103 (342)
Q Consensus        28 s~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~--~~~~~-~~~~h~~~V  103 (342)
                      ++.+..+++...|++|.++|..++++...+.....+..+.|+++++ +++++.|+.|.+||+.  +.+.. .+.. ....
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P  242 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEA  242 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEE
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCC
Confidence            3445567788899999999999988877776666788999998776 4678889999999985  44422 2222 2345


Q ss_pred             eEEEEe----CCCCEEEEe-eCCCcEEEEcCCCCCCcceeeeeec--C----C-CCcEEEEe--ccCC-eEEEEEcCCeE
Q 019384          104 RCIEYS----YAAGQVITG-SWDKSLKCWDPRGASGQERTLVGTY--P----Q-PERVYSLS--LVGN-RLVVATAGRHV  168 (342)
Q Consensus       104 ~~~~~~----~~~~~l~sg-s~D~~I~iWd~~~~~~~~~~~~~~~--~----~-~~~v~~~s--~~~~-~~~~~s~d~~v  168 (342)
                      ..++|+    |||++++.+ ..+++|.++|..+.+..........  .    + ..++..+.  ..+. .++....++.|
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v  322 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  322 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence            789999    699887655 5558999999765432111111110  0    0 11233333  2222 44555566899


Q ss_pred             EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384          169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN  247 (342)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  247 (342)
                      .++|........... .........+.++|++++++++. .+++  +.++|..+.+.......      .....+  +-.
T Consensus       323 ~~vd~~~~~~~~v~~-i~~~~~~~d~~~~pdgr~~~va~~~sn~--V~ViD~~t~kl~~~i~v------gg~~Ph--pg~  391 (567)
T 1qks_A          323 LLVDYTDLNNLKTTE-ISAERFLHDGGLDGSHRYFITAANARNK--LVVIDTKEGKLVAIEDT------GGQTPH--PGR  391 (567)
T ss_dssp             EEEETTCSSEEEEEE-EECCSSEEEEEECTTSCEEEEEEGGGTE--EEEEETTTTEEEEEEEC------SSSSBC--CTT
T ss_pred             EEEecCCCccceeee-eeccccccCceECCCCCEEEEEeCCCCe--EEEEECCCCcEEEEEec------cCcCCC--Ccc
Confidence            999987643211111 01112234677899999887765 3444  45689865422111110      001111  111


Q ss_pred             EEE-EcCCCCe-EEEec-CCCeEEEEeCCC-------ceeeeccCCCCcceEEEEECCCCCEEEEEE
Q 019384          248 AIA-FHPIYGT-FATGG-CDGFVNVWDGNN-------KKRLYQYSKYPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       248 ~v~-~sp~~~~-l~sgs-~Dg~I~iWd~~~-------~~~~~~~~~~~~~V~~v~~spdg~~las~s  304 (342)
                      .+. ++|++.. ++++. .+++|.++|..+       .+.++++......-.-+.++||+++|-+..
T Consensus       392 g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~  458 (567)
T 1qks_A          392 GANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA  458 (567)
T ss_dssp             CEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred             ceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence            222 5887554 45553 468999999887       455666554333334577899999887654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.37  E-value=4.3e-09  Score=95.42  Aligned_cols=283  Identities=11%  Similarity=-0.041  Sum_probs=160.2

Q ss_pred             EEcCCCCeEEEEeC--CC---cEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EEe----------cCCcEEEEEec
Q 019384           26 RFSNHSDHLLVSSW--DK---SVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SAS----------ADHTVRRLVFS   89 (342)
Q Consensus        26 ~fs~~~~~l~s~s~--Dg---ti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s----------~D~~i~~w~~~   89 (342)
                      ...|+++++..+..  ..   +|.++|..++++...+.-...- .+.++++++.+ .+.          .++.|.++|..
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            44577777666543  22   8999999988776554333333 89999887654 443          26778999987


Q ss_pred             cCcee-e--cc--c---CCcceeEEEEeCCCCEEEEeeC--CCcEEEEcCCCCCCcceeeeee-cCCCCcEEEEecc-CC
Q 019384           90 HGKED-I--LG--K---HDAPVRCIEYSYAAGQVITGSW--DKSLKCWDPRGASGQERTLVGT-YPQPERVYSLSLV-GN  157 (342)
Q Consensus        90 ~~~~~-~--~~--~---h~~~V~~~~~~~~~~~l~sgs~--D~~I~iWd~~~~~~~~~~~~~~-~~~~~~v~~~s~~-~~  157 (342)
                      +.+.. .  +.  .   +...-..++|+||+++|+.+..  ++.|.++| .+...     ... ......+ .+... +.
T Consensus       106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~-----~~~~i~~~~~~-~~~~~~~~  178 (373)
T 2mad_H          106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS-----DDQLLSSPTCY-HIHPGAPS  178 (373)
T ss_pred             CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE-----EeEEcCCCceE-EEEeCCCc
Confidence            76532 1  11  1   1123457899999999987764  57899999 76432     222 2222222 23333 34


Q ss_pred             eEEEEEcCCeEEEEeCCCCCCcccccc-cc-cc-ee-eEEEEEeeCCceEEEEccCCeEEEEEeechhhhhc--ccceee
Q 019384          158 RLVVATAGRHVNVYDLRNMSQPEQRRE-SS-LK-YQ-TRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQA--KKYAFK  231 (342)
Q Consensus       158 ~~~~~s~d~~v~iwd~~~~~~~~~~~~-~~-~~-~~-~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~--~~~~~~  231 (342)
                      .+++.+.|+++..+|. +++....... .. .. .. .....+.+++..++..+..+.  +..+|.......  ..+.+.
T Consensus       179 ~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--v~vid~~~~~~~v~~~~~~~  255 (373)
T 2mad_H          179 TFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK--ILQADISAAGATNKAPIDAL  255 (373)
T ss_pred             eEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCce--EEEEeccCCcceEeeeeeec
Confidence            5677788899999999 6533211000 00 00 00 111234555555544445554  455776432111  111110


Q ss_pred             eEEecCCCCceeeeeeEEEEcCCCCeEEEecC----------CCeEEEEeCCCceeeeccCCCCcceEEEEECCCCC-EE
Q 019384          232 CHRKSEAGRDIVYPVNAIAFHPIYGTFATGGC----------DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGR-LL  300 (342)
Q Consensus       232 ~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~----------Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~-~l  300 (342)
                      .......+ -.......++++|+++.|..+..          ++.|.++|..+++.+.++. -....++++|+|||+ +|
T Consensus       256 ~~~~~~~~-~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l  333 (373)
T 2mad_H          256 SGGRKADT-WRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDL  333 (373)
T ss_pred             CCcccccc-eecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEE
Confidence            00000000 00112344789999888766543          3589999999998887774 233579999999999 56


Q ss_pred             EEEEeccccCCCCCCCCCcEEEEEccCCccc
Q 019384          301 AVASSYTFEEGDKPHEPDAIFVRSVNEIEVK  331 (342)
Q Consensus       301 as~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (342)
                      .++....          +.+.++......+.
T Consensus       334 ~v~~~~~----------~~V~ViD~~t~~vv  354 (373)
T 2mad_H          334 YALSAGT----------EVLHIYDAGAGDQD  354 (373)
T ss_pred             EEEcCCC----------CeEEEEECCCCCEE
Confidence            6544211          24666666544443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.36  E-value=2.4e-10  Score=102.50  Aligned_cols=258  Identities=11%  Similarity=0.075  Sum_probs=159.1

Q ss_pred             CCeEEEEEcCCCCeEEEEe--CCCcEEEEECCCceeeee-------eecCCceEEEEEeCCCCeEEEec------CCcEE
Q 019384           20 DGISNLRFSNHSDHLLVSS--WDKSVRLYDASANVLRGE-------FMHGGPVLDCCFHDDSSGFSASA------DHTVR   84 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s--~Dgti~vwd~~~~~~~~~-------~~h~~~V~~~~~~~~~~~~s~s~------D~~i~   84 (342)
                      ..+..|+++++|+.+++..  .++.++||.+.++++...       ..|-..+.++++.+++.++.+..      +..|.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~   96 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV   96 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence            6889999999999998864  234467776655554321       12446789999988777765442      57888


Q ss_pred             EEEeccCc-eeecc------cCCcceeEEEEeCCCCEE-EEee---CCCcEEEEcCCCCCCcceeeeeecCC--CCcEEE
Q 019384           85 RLVFSHGK-EDILG------KHDAPVRCIEYSYAAGQV-ITGS---WDKSLKCWDPRGASGQERTLVGTYPQ--PERVYS  151 (342)
Q Consensus        85 ~w~~~~~~-~~~~~------~h~~~V~~~~~~~~~~~l-~sgs---~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~v~~  151 (342)
                      +||+.+++ ...+.      .+...+..+++.+++..+ ++-+   .++.|.+||+.++..  ...+..+..  ... ..
T Consensus        97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~--~r~~~~~~~~~~~~-~~  173 (343)
T 2qe8_A           97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA--ARVLQGYPGIAPED-ID  173 (343)
T ss_dssp             EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE--EEECTTCTTTSCCS-CC
T ss_pred             EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE--EEEecCCCcccccc-cc
Confidence            99988776 33222      233457899999865554 5555   678999999865321  111111100  001 12


Q ss_pred             EeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh-------
Q 019384          152 LSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ-------  224 (342)
Q Consensus       152 ~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~-------  224 (342)
                      +..++..+.+...+++++.|..                ....++++|+++.++++...+. .++.++......       
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~~----------------~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~  236 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPHL----------------GVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAE  236 (343)
T ss_dssp             CEETTEECBEECTTSCEECCCC----------------CEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHH
T ss_pred             eeECCEEEEeccCCCceeceec----------------ccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhh
Confidence            3334444555556666554421                2467889999988887766554 444555421110       


Q ss_pred             -cccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCC-CCcceEEEEECCCCCEEEE
Q 019384          225 -AKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSK-YPTSIAALSFSRDGRLLAV  302 (342)
Q Consensus       225 -~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~-~~~~V~~v~~spdg~~las  302 (342)
                       ...+...++..         ....++++++|.++++...++.|.+||.++++....... +.....+++|.+||+++++
T Consensus       237 ~~~~~~~~g~~g---------~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~  307 (343)
T 2qe8_A          237 LGSKIERYSEKP---------ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFD  307 (343)
T ss_dssp             HHTTCEEEEECC---------SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEE
T ss_pred             hhcceEecccCC---------CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEE
Confidence             00011111111         245789999999999999999999999855543222211 2346899999999998887


Q ss_pred             EEec
Q 019384          303 ASSY  306 (342)
Q Consensus       303 ~s~~  306 (342)
                      .+..
T Consensus       308 ~~~~  311 (343)
T 2qe8_A          308 CNQL  311 (343)
T ss_dssp             ECCG
T ss_pred             eCcc
Confidence            7653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.34  E-value=1e-09  Score=99.09  Aligned_cols=269  Identities=13%  Similarity=0.023  Sum_probs=158.1

Q ss_pred             EEEEcCCCCeEEEEeC-----CCcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEe----------cCCcEEEEE
Q 019384           24 NLRFSNHSDHLLVSSW-----DKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSAS----------ADHTVRRLV   87 (342)
Q Consensus        24 ~l~fs~~~~~l~s~s~-----Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s----------~D~~i~~w~   87 (342)
                      .....|+++.+.....     +++|.+.|..+.+....+.-..... +.++++++ ++.+.          .++.|.+||
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            4556789988877654     7899999999988776654433334 89998776 44544          356799999


Q ss_pred             eccCcee-ec--cc-----CCcceeEEEEeCCCCEEEEeeC--CCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC
Q 019384           88 FSHGKED-IL--GK-----HDAPVRCIEYSYAAGQVITGSW--DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN  157 (342)
Q Consensus        88 ~~~~~~~-~~--~~-----h~~~V~~~~~~~~~~~l~sgs~--D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~  157 (342)
                      ..+.+.. .+  ..     ....-..++|+|||++++.+..  +++|.++|+.+...     ......+...........
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v-----v~tI~v~g~~~~~P~g~~  190 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-----KRMLDVPDCYHIFPTAPD  190 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE-----EEEEECCSEEEEEEEETT
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE-----EEEEECCCcceeecCCCc
Confidence            9887732 22  11     1224557899999998877653  68999999876432     222222222111222345


Q ss_pred             eEEEEEcCCeEEEEeCCC-CCCcccccccccc---eee-EEEEEe-eCCceEEEEccCCeEEEEEeechhhhh--cccce
Q 019384          158 RLVVATAGRHVNVYDLRN-MSQPEQRRESSLK---YQT-RCVRCY-PNGTGYALSSVEGRVAMEFFDLSEASQ--AKKYA  229 (342)
Q Consensus       158 ~~~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~---~~~-~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~--~~~~~  229 (342)
                      .+++.+.||++.+.++.. ++.. ......+.   ..+ ....+. ++|+.+ ..+.++++  +.+|......  ...+.
T Consensus       191 ~~~~~~~DG~~~~v~~~~~g~v~-~~~~~~~~~~~~~~~~~~~~~~~dG~~~-~vs~~g~V--~v~d~~~~~~~v~~~~~  266 (386)
T 3sjl_D          191 TFFMHCRDGSLAKVAFGTEGTPE-ITHTEVFHPEDEFLINHPAYSQKAGRLV-WPTYTGKI--HQIDLSSGDAKFLPAVE  266 (386)
T ss_dssp             EEEEEETTSCEEEEECCSSSCCE-EEECCCCSCTTSCBCSCCEEETTTTEEE-EEBTTSEE--EEEECTTSSCEECCCEE
T ss_pred             eeEEECCCCCEEEEECCCCCeEE-EeecceeccccccccccceeEcCCCcEE-EEeCCCEE--EEEECCCCcceeeccee
Confidence            677888888888888875 3321 11100110   000 112333 455433 45556654  5578754321  11111


Q ss_pred             eeeEEecCCCCceeeeeeEEEEcCCCCeEEEecC----------CCeEEEEeCCCceeeeccCCCCcceEEEEECCCCC-
Q 019384          230 FKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGC----------DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGR-  298 (342)
Q Consensus       230 ~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~----------Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~-  298 (342)
                      +..-.....+ -.......++++|+++.+.....          ..+|.+.|..+++.+.++.- ..++++|+|+||++ 
T Consensus       267 ~~~~~~~~~g-~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~  344 (386)
T 3sjl_D          267 ALTEAERADG-WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKP  344 (386)
T ss_dssp             SSCHHHHHTT-EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSC
T ss_pred             cccccccccc-ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCe
Confidence            0000000000 00112445788999888766532          25799999999988876642 24789999999997 


Q ss_pred             EEEEEE
Q 019384          299 LLAVAS  304 (342)
Q Consensus       299 ~las~s  304 (342)
                      +|.++.
T Consensus       345 ~ly~tn  350 (386)
T 3sjl_D          345 LLYALS  350 (386)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            666554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.32  E-value=9.4e-10  Score=99.32  Aligned_cols=255  Identities=13%  Similarity=0.031  Sum_probs=152.9

Q ss_pred             EEEEcCCCCeEEEEe----------CCCcEEEEECCCceeeeeeec--------CCceEEEEEeCCCCe-EEEec--CCc
Q 019384           24 NLRFSNHSDHLLVSS----------WDKSVRLYDASANVLRGEFMH--------GGPVLDCCFHDDSSG-FSASA--DHT   82 (342)
Q Consensus        24 ~l~fs~~~~~l~s~s----------~Dgti~vwd~~~~~~~~~~~h--------~~~V~~~~~~~~~~~-~s~s~--D~~   82 (342)
                      .+++||||++|..+.          .+++|.+||..+.+....+.-        ......+.|+++++. +.+..  ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            499999999887665          368999999998876655421        124567899987765 44542  688


Q ss_pred             EEEEEeccCcee-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-CCCcE---EEEeccCC
Q 019384           83 VRRLVFSHGKED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP-QPERV---YSLSLVGN  157 (342)
Q Consensus        83 i~~w~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~v---~~~s~~~~  157 (342)
                      |.++|..+.+.. .+..-.  . ...+......+++.+.||++-+.++............... ....+   ..+.....
T Consensus       162 VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG  238 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG  238 (386)
T ss_dssp             EEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             EEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence            999999888742 221111  0 1223223456778888999888887642221110000000 00111   12332233


Q ss_pred             eEEEEEcCCeEEEEeCCCCCCcccccc---------ccc-ceeeEEEEEeeCCceEEEEcc--------CCeEEEEEeec
Q 019384          158 RLVVATAGRHVNVYDLRNMSQPEQRRE---------SSL-KYQTRCVRCYPNGTGYALSSV--------EGRVAMEFFDL  219 (342)
Q Consensus       158 ~~~~~s~d~~v~iwd~~~~~~~~~~~~---------~~~-~~~~~~v~~~~~~~~~~~~s~--------~~~~~i~~~d~  219 (342)
                      .++..+.+++|.+.|+...........         ... +.....++++++++.+++...        +....++++|.
T Consensus       239 ~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~  318 (386)
T 3sjl_D          239 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA  318 (386)
T ss_dssp             EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC
Confidence            566688899999999976532111100         000 011123566788887776643        12346778998


Q ss_pred             hhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEE-ecCCCeEEEEeCCCceeeeccC--CCCcceEEEEECC
Q 019384          220 SEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFAT-GGCDGFVNVWDGNNKKRLYQYS--KYPTSIAALSFSR  295 (342)
Q Consensus       220 ~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~s-gs~Dg~I~iWd~~~~~~~~~~~--~~~~~V~~v~~sp  295 (342)
                      .+.+..+.+.+.            ..+..|+|+||++ +|++ ...+++|.++|..+++.+.++.  +|.   +.|.+++
T Consensus       319 ~t~kv~~~i~vg------------~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p---~~l~~s~  383 (386)
T 3sjl_D          319 KTGERLAKFEMG------------HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG---PQVITTA  383 (386)
T ss_dssp             TTCCEEEEEEEE------------EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS---CCEEEEC
T ss_pred             CCCeEEEEEECC------------CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCC---ceeEECC
Confidence            654433333221            2477899999996 5555 5669999999999999887665  343   4566777


Q ss_pred             C
Q 019384          296 D  296 (342)
Q Consensus       296 d  296 (342)
                      |
T Consensus       384 d  384 (386)
T 3sjl_D          384 D  384 (386)
T ss_dssp             C
T ss_pred             c
Confidence            6

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.32  E-value=2.6e-09  Score=93.61  Aligned_cols=229  Identities=11%  Similarity=0.042  Sum_probs=136.0

Q ss_pred             CeEEEEEcCCC-CeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeeccc-
Q 019384           21 GISNLRFSNHS-DHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGK-   98 (342)
Q Consensus        21 ~V~~l~fs~~~-~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~-   98 (342)
                      ---...|++++ .++++...+++|..||..++... .....+.+.++++.+++.++.+. +..|.+|+..++....+.. 
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~   91 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATV   91 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEEC
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEec
Confidence            34578899965 45667778899999999876543 34456789999999888876665 6678899988776443321 


Q ss_pred             ----CCcceeEEEEeCCCCEEEEeeCC---------CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEE-EEEc
Q 019384           99 ----HDAPVRCIEYSYAAGQVITGSWD---------KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLV-VATA  164 (342)
Q Consensus        99 ----h~~~V~~~~~~~~~~~l~sgs~D---------~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~-~~s~  164 (342)
                          ....++.+++.|+|.+.++...+         ..-++|.+... +........... ..-+.++.+++.++ +.+.
T Consensus        92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~-pngi~~spdg~~lyv~~~~  169 (297)
T 3g4e_A           92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDI-SNGLDWSLDHKIFYYIDSL  169 (297)
T ss_dssp             CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESB-EEEEEECTTSCEEEEEEGG
T ss_pred             CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeecccc-ccceEEcCCCCEEEEecCC
Confidence                22457889999999866654322         22233333211 111111111100 11122333333332 2233


Q ss_pred             CCeEEEEeCC--CCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCce
Q 019384          165 GRHVNVYDLR--NMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDI  242 (342)
Q Consensus       165 d~~v~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~  242 (342)
                      ++.|..||+.  ++..         . . .                    . .+.+...                    .
T Consensus       170 ~~~i~~~~~d~~~G~~---------~-~-~--------------------~-~~~~~~~--------------------~  197 (297)
T 3g4e_A          170 SYSVDAFDYDLQTGQI---------S-N-R--------------------R-SVYKLEK--------------------E  197 (297)
T ss_dssp             GTEEEEEEECTTTCCE---------E-E-E--------------------E-EEEECCG--------------------G
T ss_pred             CCcEEEEeccCCCCcc---------c-C-c--------------------E-EEEECCC--------------------C
Confidence            4455555542  1100         0 0 0                    0 0011100                    0


Q ss_pred             eeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEEC-CCCCEEEEEEe
Q 019384          243 VYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFS-RDGRLLAVASS  305 (342)
Q Consensus       243 ~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~s-pdg~~las~s~  305 (342)
                      ......+++.++|.++++...++.|.+||.++++.+..+..+...+.+++|+ ||++.|.+++.
T Consensus       198 ~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          198 EQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             GCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            0135678899999877777778899999999888887777666789999998 99987766665

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.29  E-value=4.9e-10  Score=110.03  Aligned_cols=245  Identities=13%  Similarity=0.045  Sum_probs=146.2

Q ss_pred             CCCCCCCeEEEEEcCCCCeEE-----EEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEecCCc------
Q 019384           15 GNPPSDGISNLRFSNHSDHLL-----VSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSASADHT------   82 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~~~~~l~-----s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~------   82 (342)
                      .+.+...+..++|||||++||     +|+.+.+|+|||+.+++.+....+......++|+ |++ ++.++.+..      
T Consensus       124 a~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          124 SPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             STTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             cCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccc
Confidence            344556788999999999988     3444478999999988755432221113567888 654 566666643      


Q ss_pred             -------EEEEEeccCce---eecc--c-CCcceeEEEEeCCCCEEE-Eee---CCCcEEEEcCCCCCCcceeeeeecCC
Q 019384           83 -------VRRLVFSHGKE---DILG--K-HDAPVRCIEYSYAAGQVI-TGS---WDKSLKCWDPRGASGQERTLVGTYPQ  145 (342)
Q Consensus        83 -------i~~w~~~~~~~---~~~~--~-h~~~V~~~~~~~~~~~l~-sgs---~D~~I~iWd~~~~~~~~~~~~~~~~~  145 (342)
                             |.+|++.+...   .++.  . |...+.++.|+||++.|+ +.+   .+..|.+||+.++..... .+.....
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~-~l~~~~~  281 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL-TVQGDLD  281 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE-EEECSSS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE-EEeCCCC
Confidence                   88888876542   2222  2 344578899999999774 332   235899999876433222 2222111


Q ss_pred             CCcEEEEeccCCeEEEEEcC----CeEEEEeCCCCCCcc-cccccccceeeEEEEEeeCCceEEEEc-cCCeEEEEEeec
Q 019384          146 PERVYSLSLVGNRLVVATAG----RHVNVYDLRNMSQPE-QRRESSLKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDL  219 (342)
Q Consensus       146 ~~~v~~~s~~~~~~~~~s~d----~~v~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~  219 (342)
                       .....++.+++.++..+..    ..|..+|+.+..... +..... .....  .++++++.++... .++...|++||.
T Consensus       282 -~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~  357 (693)
T 3iuj_A          282 -ADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE-RQQVL--TVHSGSGYLFAEYMVDATARVEQFDY  357 (693)
T ss_dssp             -SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC-CSSCE--EEEEETTEEEEEEEETTEEEEEEECT
T ss_pred             -ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC-CCCEE--EEEEECCEEEEEEEECCeeEEEEEEC
Confidence             1122256667776655543    468899998753211 111111 11222  6788888776554 566667788887


Q ss_pred             hhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC----CeEEEEeCCCce
Q 019384          220 SEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD----GFVNVWDGNNKK  276 (342)
Q Consensus       220 ~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D----g~I~iWd~~~~~  276 (342)
                      ... ......+.          ....+..+.++|++..|+....+    ++|+.||+.+++
T Consensus       358 ~g~-~~~~l~~p----------~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          358 EGK-RVREVALP----------GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             TSC-EEEEECCS----------SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             CCC-eeEEeecC----------CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            522 11111110          01135566778888877655444    789999987654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.29  E-value=2.6e-10  Score=101.51  Aligned_cols=115  Identities=8%  Similarity=-0.019  Sum_probs=83.1

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeee----------ecCCceEEEEEeC-CCCeEEEe--cCCc
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEF----------MHGGPVLDCCFHD-DSSGFSAS--ADHT   82 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~----------~h~~~V~~~~~~~-~~~~~s~s--~D~~   82 (342)
                      .+-.....|+|+++|+++++...+++|++||..... ....+          .+-..+.++++.+ ++.++.+.  .++.
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~  167 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR  167 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence            344578899999999999999999999999987652 22222          2334688999987 77776554  4888


Q ss_pred             EEEEEeccCceeeccc----------CCcceeEEEEeCC-CCEEEEeeCCCcEEEEcCCC
Q 019384           83 VRRLVFSHGKEDILGK----------HDAPVRCIEYSYA-AGQVITGSWDKSLKCWDPRG  131 (342)
Q Consensus        83 i~~w~~~~~~~~~~~~----------h~~~V~~~~~~~~-~~~l~sgs~D~~I~iWd~~~  131 (342)
                      |++|+........+..          +......++++|+ +.++++...++.|++||.++
T Consensus       168 I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~  227 (329)
T 3fvz_A          168 IVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT  227 (329)
T ss_dssp             EEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             EEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC
Confidence            9999844332333321          2234889999998 66667778889999999864

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.24  E-value=3.3e-10  Score=102.64  Aligned_cols=173  Identities=17%  Similarity=0.119  Sum_probs=118.0

Q ss_pred             ceEEEEEeCCCCeE-EEecCCcEEEEEeccCc-----------eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcC
Q 019384           62 PVLDCCFHDDSSGF-SASADHTVRRLVFSHGK-----------EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDP  129 (342)
Q Consensus        62 ~V~~~~~~~~~~~~-s~s~D~~i~~w~~~~~~-----------~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~  129 (342)
                      .+..+++++...++ +|+.+ .+.+|++...+           ......+.. |+.++|  ++..|+.+ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            57888998766655 55555 55669865332           112234556 999999  78888888 8899999998


Q ss_pred             CCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC
Q 019384          130 RGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE  209 (342)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~  209 (342)
                      ++...  ......+  ...+..+.+.+..+++++.||.+.+||+.+...             .                 
T Consensus       114 ~sl~~--~~~~~~~--~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~-------------~-----------------  159 (388)
T 1xip_A          114 EELSE--FRTVTSF--EKPVFQLKNVNNTLVILNSVNDLSALDLRTKST-------------K-----------------  159 (388)
T ss_dssp             SSTTC--EEEEEEC--SSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-------------E-----------------
T ss_pred             hhhhc--cCcccee--ecceeeEEecCCCEEEEECCCCEEEEEccCCcc-------------c-----------------
Confidence            75432  1122222  233555555444577888888888888865310             0                 


Q ss_pred             CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCcee--eecc------
Q 019384          210 GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKR--LYQY------  281 (342)
Q Consensus       210 ~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~--~~~~------  281 (342)
                         .                   +.         ..|+|++|||+|  ++.|..||++++|+...+..  ..++      
T Consensus       160 ---~-------------------~~---------~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~  206 (388)
T 1xip_A          160 ---Q-------------------LA---------QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSEL  206 (388)
T ss_dssp             ---E-------------------EE---------ESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHH
T ss_pred             ---c-------------------cc---------CCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCccc
Confidence               0                   00         138899999999  78899999999998876653  3333      


Q ss_pred             C---CCCcceEEEEECCCCCEEEEEEec
Q 019384          282 S---KYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       282 ~---~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      .   +|...|.+|.|.+++++|++-...
T Consensus       207 ~~~~~~~~~V~sI~wl~~~~flv~y~~~  234 (388)
T 1xip_A          207 EELPVEEYSPLSVTILSPQDFLAVFGNV  234 (388)
T ss_dssp             HTSCTTTSEEEEEEESSSSEEEEEEECC
T ss_pred             ccccCCCeeEEEEEEecCCeEEEEEcCC
Confidence            2   477889999999999999876653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.23  E-value=1.8e-08  Score=91.31  Aligned_cols=255  Identities=12%  Similarity=0.062  Sum_probs=147.5

Q ss_pred             CCCccCCCCCCCCeEEEEEcCCCCeEEEEe----------CCCcEEEEECCCceeeeeeec--------CCceEEEEEeC
Q 019384            9 TSGRELGNPPSDGISNLRFSNHSDHLLVSS----------WDKSVRLYDASANVLRGEFMH--------GGPVLDCCFHD   70 (342)
Q Consensus         9 ~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s----------~Dgti~vwd~~~~~~~~~~~h--------~~~V~~~~~~~   70 (342)
                      .+++.+...+.+....++||||+++|..+.          .+++|.+||..+.+....+.-        ......+.|+|
T Consensus        55 ~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp  134 (373)
T 2mad_H           55 GSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP  134 (373)
T ss_pred             CCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC
Confidence            344444443333334899999999998775          378999999987655443321        12345788988


Q ss_pred             CCCe-EEEec--CCcEEEEEeccCceeec-ccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCcceeee-eecC
Q 019384           71 DSSG-FSASA--DHTVRRLVFSHGKEDIL-GKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERTLV-GTYP  144 (342)
Q Consensus        71 ~~~~-~s~s~--D~~i~~w~~~~~~~~~~-~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~~~-~~~~  144 (342)
                      +++. +.+..  ++.|.++| .+++.... ....   .|+.+.|++ ..+++.+.|+++.++|. ++........ ....
T Consensus       135 DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~  209 (373)
T 2mad_H          135 NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLT  209 (373)
T ss_pred             CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccccc
Confidence            7765 45553  46799999 87764321 2111   134455555 45677788999999998 4332100000 0000


Q ss_pred             CCCcE---EEEeccCCeEEEEEcCCeEEEEeCCCCCCcccc-ccc------cc---ceeeEEEEEeeCCceEEEEccC--
Q 019384          145 QPERV---YSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQR-RES------SL---KYQTRCVRCYPNGTGYALSSVE--  209 (342)
Q Consensus       145 ~~~~v---~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~-~~~------~~---~~~~~~v~~~~~~~~~~~~s~~--  209 (342)
                      ....+   ..+..++..++..+.++.+.+.|+......... ...      ..   +.....+.++|+++.+++...+  
T Consensus       210 ~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~  289 (373)
T 2mad_H          210 AAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS  289 (373)
T ss_pred             CCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCC
Confidence            11111   123334455555567788999998654211100 000      00   1112236678888877665432  


Q ss_pred             ------CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEec-CCCeEEEEeCCCceeeec
Q 019384          210 ------GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGG-CDGFVNVWDGNNKKRLYQ  280 (342)
Q Consensus       210 ------~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs-~Dg~I~iWd~~~~~~~~~  280 (342)
                            ....++++|..+.+....+.+.            .....++|+|||+ .++++. .+++|.+||..+++.+.+
T Consensus       290 ~~~~~~~~~~V~VID~~t~~vv~~i~~g------------~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          290 AWKLHAAAKEVTSVTGLVGQTSSQISLG------------HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             cccccCCCCeEEEEECCCCEEEEEEECC------------CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence                  1234667887543322222111            1367899999999 777777 489999999999888766

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.22  E-value=1.5e-08  Score=93.10  Aligned_cols=235  Identities=9%  Similarity=-0.033  Sum_probs=140.1

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEecCC--cEEEEEeccCce-e
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSASADH--TVRRLVFSHGKE-D   94 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~--~i~~w~~~~~~~-~   94 (342)
                      -.....|+|+++++++++...++.|++||..++.+........... ++|.+++. ++.+..++  .|..++...... .
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            4578899999999988888888999999998877665544333344 88887765 45666655  577777655432 2


Q ss_pred             ec----ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeee---c--CCCC-c-EEEEeccCCeEE-EE
Q 019384           95 IL----GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGT---Y--PQPE-R-VYSLSLVGNRLV-VA  162 (342)
Q Consensus        95 ~~----~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~---~--~~~~-~-v~~~s~~~~~~~-~~  162 (342)
                      .+    ......+.+++++|++..|+.+..++.|..||..+...   ..+..   .  .... . -+.++.++..++ +-
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~---~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d  285 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV---TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD  285 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE---EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE---EEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence            22    22456678999999666666677788999999864321   11110   0  0111 1 334444323333 33


Q ss_pred             EcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc--CCeEEEEEeechhhhhcccceeeeEEecCCCC
Q 019384          163 TAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV--EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGR  240 (342)
Q Consensus       163 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~--~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~  240 (342)
                      ...+.|+.||....              ...          +.+..  .+.     -|. .... ..             
T Consensus       286 ~~~~~I~~~~~~g~--------------~~~----------~~g~~~~~g~-----~dg-~~~~-~~-------------  321 (409)
T 3hrp_A          286 QNLSSVYKITPDGE--------------CEW----------FCGSATQKTV-----QDG-LREE-AL-------------  321 (409)
T ss_dssp             TTTTEEEEECTTCC--------------EEE----------EEECTTCCSC-----BCE-EGGG-CB-------------
T ss_pred             CCCCEEEEEecCCC--------------EEE----------EEeCCCCCCc-----CCC-cccc-cE-------------
Confidence            44456666654321              000          00100  000     000 0000 00             


Q ss_pred             ceeeeeeEEEEcCCCCeEEEec-CCCeEEEEeCCCceeeeccCCC---------------CcceEEEEECCCCCEEEEEE
Q 019384          241 DIVYPVNAIAFHPIYGTFATGG-CDGFVNVWDGNNKKRLYQYSKY---------------PTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       241 ~~~~~v~~v~~sp~~~~l~sgs-~Dg~I~iWd~~~~~~~~~~~~~---------------~~~V~~v~~spdg~~las~s  304 (342)
                        ......++++|+|.++++-+ .++.|+.||..++... .+.++               ......++++|||.++++-.
T Consensus       322 --~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~  398 (409)
T 3hrp_A          322 --FAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEA  398 (409)
T ss_dssp             --CSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEES
T ss_pred             --eCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEEC
Confidence              01256799999999888888 8999999997766532 22222               24579999999988776543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.20  E-value=4.4e-08  Score=84.92  Aligned_cols=224  Identities=8%  Similarity=-0.027  Sum_probs=139.6

Q ss_pred             cCCceEEEEEeCCCCeEEEec-CCcEEEEEeccCceeec--ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCc
Q 019384           59 HGGPVLDCCFHDDSSGFSASA-DHTVRRLVFSHGKEDIL--GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ  135 (342)
Q Consensus        59 h~~~V~~~~~~~~~~~~s~s~-D~~i~~w~~~~~~~~~~--~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~  135 (342)
                      +...+.++++.+++.++.+.. ++.+.+|+.. +....+  ..+...+.++++.+++...++...++.|..||... .  
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~--   88 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-I--   88 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-C--
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-c--
Confidence            345788999988888766654 6789999877 543322  23456789999999998888777788999999752 1  


Q ss_pred             ceeeeeecCCCCcEEEEecc--CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEE
Q 019384          136 ERTLVGTYPQPERVYSLSLV--GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA  213 (342)
Q Consensus       136 ~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~  213 (342)
                      . ..+........+..+..+  +..+++...++.|..||. ++.... .........+..+++.+++..+++...++.+ 
T Consensus        89 ~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i-  164 (299)
T 2z2n_A           89 I-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-YELPNKGSYPSFITLGSDNALWFTENQNNAI-  164 (299)
T ss_dssp             E-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEE-
T ss_pred             E-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-ecCCCCCCCCceEEEcCCCCEEEEeCCCCEE-
Confidence            1 111111112234455554  444444445678999998 432211 1111112346778888888766655555554 


Q ss_pred             EEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeee-ccCCCCcceEEEE
Q 019384          214 MEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLY-QYSKYPTSIAALS  292 (342)
Q Consensus       214 i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~-~~~~~~~~V~~v~  292 (342)
                       ..+|. +. ....+.+..         ....+..++++++|..+++...++.|.+||. +++... .+..+...+.+++
T Consensus       165 -~~~~~-~g-~~~~~~~~~---------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~  231 (299)
T 2z2n_A          165 -GRITE-SG-DITEFKIPT---------PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAIT  231 (299)
T ss_dssp             -EEECT-TC-CEEEEECSS---------TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE
T ss_pred             -EEEcC-CC-cEEEeeCCC---------CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEE
Confidence             45776 22 111111110         0113678999999988787777889999998 554322 2344556789999


Q ss_pred             ECCCCCEEEEE
Q 019384          293 FSRDGRLLAVA  303 (342)
Q Consensus       293 ~spdg~~las~  303 (342)
                      ++++|+++++.
T Consensus       232 ~~~~g~l~v~~  242 (299)
T 2z2n_A          232 AGAGIDLWFTE  242 (299)
T ss_dssp             ECSTTCEEEEE
T ss_pred             ECCCCCEEEec
Confidence            99999977654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.19  E-value=3.7e-08  Score=87.47  Aligned_cols=228  Identities=12%  Similarity=0.002  Sum_probs=132.5

Q ss_pred             CeEEEEEcCCCC-eEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeeccc-
Q 019384           21 GISNLRFSNHSD-HLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGK-   98 (342)
Q Consensus        21 ~V~~l~fs~~~~-~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~-   98 (342)
                      .....+|+|+++ ++++...++.|.+||..+++... ......+.++.+.+++.++.++.+ .+.+|+..+++...+.. 
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~  127 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAEL  127 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECS
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EECCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeC
Confidence            346789999754 55666678999999998776543 334567999999888877766644 48888887776443321 


Q ss_pred             ----CCcceeEEEEeCCCCEEEEeeCC----CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEE-EcCCeEE
Q 019384           99 ----HDAPVRCIEYSYAAGQVITGSWD----KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVA-TAGRHVN  169 (342)
Q Consensus        99 ----h~~~V~~~~~~~~~~~l~sgs~D----~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~-s~d~~v~  169 (342)
                          ....++.++++++++++++...+    ....||.+.+  +.......... ......++.+++.++.+ +.++.|.
T Consensus       128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~--g~~~~~~~~~~-~~~~i~~s~dg~~lyv~~~~~~~I~  204 (326)
T 2ghs_A          128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK--GKVTKLFADIS-IPNSICFSPDGTTGYFVDTKVNRLM  204 (326)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET--TEEEEEEEEES-SEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeC--CcEEEeeCCCc-ccCCeEEcCCCCEEEEEECCCCEEE
Confidence                12468899999999876654322    2233333221  11111111110 11122333344444333 3345566


Q ss_pred             EEeCC--CC-CCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384          170 VYDLR--NM-SQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV  246 (342)
Q Consensus       170 iwd~~--~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v  246 (342)
                      +||+.  ++ ...                             ...+   +.+...                    .....
T Consensus       205 ~~d~~~~~Gl~~~-----------------------------~~~~---~~~~~~--------------------~~~~p  232 (326)
T 2ghs_A          205 RVPLDARTGLPTG-----------------------------KAEV---FIDSTG--------------------IKGGM  232 (326)
T ss_dssp             EEEBCTTTCCBSS-----------------------------CCEE---EEECTT--------------------SSSEE
T ss_pred             EEEcccccCCccc-----------------------------CceE---EEECCC--------------------CCCCC
Confidence            66653  11 000                             0000   000000                    00124


Q ss_pred             eEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEEC-CCCCEEEEEEec
Q 019384          247 NAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFS-RDGRLLAVASSY  306 (342)
Q Consensus       247 ~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~s-pdg~~las~s~~  306 (342)
                      ..+++.++|.++++...++.|.+||. +++.+..+......+.+++|+ ||+..|.+++..
T Consensus       233 ~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          233 DGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            56888999987777666789999998 456666665555679999998 999877666653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.17  E-value=8.4e-09  Score=101.01  Aligned_cols=296  Identities=11%  Similarity=0.055  Sum_probs=171.6

Q ss_pred             CCCeEEEEeCCCcEEEEECCCceeeeeeecC------CceEEEEEeCCCCeEEEe------cCCcEEEEEeccCceee-c
Q 019384           30 HSDHLLVSSWDKSVRLYDASANVLRGEFMHG------GPVLDCCFHDDSSGFSAS------ADHTVRRLVFSHGKEDI-L   96 (342)
Q Consensus        30 ~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~------~~V~~~~~~~~~~~~s~s------~D~~i~~w~~~~~~~~~-~   96 (342)
                      ++.+|+.++.|+.+..+|..+++++......      ..+.+.-...++.++.++      .++.+..||..+++..- +
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            3567888999999999999988765543321      112111111245555543      26788889888877421 1


Q ss_pred             c-------------------------------cCCcceeEEEEeCCCCEEEEeeCCCc-------------------EEE
Q 019384           97 G-------------------------------KHDAPVRCIEYSYAAGQVITGSWDKS-------------------LKC  126 (342)
Q Consensus        97 ~-------------------------------~h~~~V~~~~~~~~~~~l~sgs~D~~-------------------I~i  126 (342)
                      .                               ++......+++.+++++|+.++.++.                   |..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            0                               01111125788888889998887764                   999


Q ss_pred             EcCCCCCCcceeeeeecC-------CCCc--EEEEeccCC---eEEEEEcCCeEEEEeCCCCCCccccccccc-------
Q 019384          127 WDPRGASGQERTLVGTYP-------QPER--VYSLSLVGN---RLVVATAGRHVNVYDLRNMSQPEQRRESSL-------  187 (342)
Q Consensus       127 Wd~~~~~~~~~~~~~~~~-------~~~~--v~~~s~~~~---~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~-------  187 (342)
                      ||.+++..  ........       ....  ...+..++.   .++.++.+|.+.++|.++++..........       
T Consensus       280 lD~~TG~~--~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~  357 (689)
T 1yiq_A          280 VNADTGEY--VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD  357 (689)
T ss_dssp             EETTTCCE--EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred             EEccCCce--eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence            99886543  22222111       1111  122333443   577788889999999998864311100000       


Q ss_pred             -------------------ce-----------eeEEEEEeeCCceEEEEccCC---------------------------
Q 019384          188 -------------------KY-----------QTRCVRCYPNGTGYALSSVEG---------------------------  210 (342)
Q Consensus       188 -------------------~~-----------~~~~v~~~~~~~~~~~~s~~~---------------------------  210 (342)
                                         ..           .-..++++|+...+++.+.+.                           
T Consensus       358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  437 (689)
T 1yiq_A          358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG  437 (689)
T ss_dssp             TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred             ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence                               00           001256677766666553220                           


Q ss_pred             ----------------eEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384          211 ----------------RVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       211 ----------------~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~  274 (342)
                                      .-.+..||..+.+  ..|....+.          ++..-.+...+..++.|+.||.++.||.++
T Consensus       438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~--~~W~~~~~~----------~~~~g~~~tagglvf~gt~dg~l~a~D~~t  505 (689)
T 1yiq_A          438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQ--AAWEVPYVT----------IFNGGTLSTAGNLVFEGSADGRVIAYAADT  505 (689)
T ss_dssp             CCCSSHHHHHHHHTTCEEEEEEEETTTTE--EEEEEEESS----------SCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             ccCcccccCCCCCCCcceeEEEEECCCCC--eEeEccCCC----------CccCccceECCCEEEEECCCCcEEEEECCC
Confidence                            1345557765432  223322211          122234556788999999999999999999


Q ss_pred             ceeeeccCCC-CcceEEEEECCCCC-EEEEEEeccccC---------CCCCCCCCcEEEEEccCCccccCCCCCCC
Q 019384          275 KKRLYQYSKY-PTSIAALSFSRDGR-LLAVASSYTFEE---------GDKPHEPDAIFVRSVNEIEVKPKPKAYPN  339 (342)
Q Consensus       275 ~~~~~~~~~~-~~~V~~v~~spdg~-~las~s~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (342)
                      ++.+.+++.. .....-+.|+.||+ |+++.+.++-..         .......+.++++.+......|...+|.+
T Consensus       506 G~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G~gg~~~~~~~~~~~~~~~~~g~~~~~f~l~~~~~~p~~~~~~~  581 (689)
T 1yiq_A          506 GEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAGWGGAFSTFAGALSLRAGVQPYAQVLTYKLGGTAKLQEPAPRPD  581 (689)
T ss_dssp             CCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCTTHHHHTHHHHGGGCCCCCCEEEEEEETCCCCCCCCCCCCC
T ss_pred             CccceeeeCCCCcccCceEEEECCEEEEEEEecCCccccccccccccccccCCCceEEEeecCCcccccccccccc
Confidence            9998777533 22335688889998 666665532111         12234556889999976555565555653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.12  E-value=1.9e-08  Score=98.36  Aligned_cols=284  Identities=12%  Similarity=0.094  Sum_probs=166.4

Q ss_pred             CCCeEEEEeCCCcEEEEECCCceeeeeeecC------CceEEEEEeCCCCeEEEec------CCcEEEEEeccCceee--
Q 019384           30 HSDHLLVSSWDKSVRLYDASANVLRGEFMHG------GPVLDCCFHDDSSGFSASA------DHTVRRLVFSHGKEDI--   95 (342)
Q Consensus        30 ~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~------~~V~~~~~~~~~~~~s~s~------D~~i~~w~~~~~~~~~--   95 (342)
                      ++.+|+.++.|+.+..+|..+++.+..+...      ..+.+.-...++.++.++.      ++.|..+|..+++..-  
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            3567888899999999999988766544322      1222211223556665553      6889999988877431  


Q ss_pred             -cc------------------------------cCCcceeEEEEeCCCCEEEEeeCCC-------------------cEE
Q 019384           96 -LG------------------------------KHDAPVRCIEYSYAAGQVITGSWDK-------------------SLK  125 (342)
Q Consensus        96 -~~------------------------------~h~~~V~~~~~~~~~~~l~sgs~D~-------------------~I~  125 (342)
                       ..                              +.......+++.++++.|+.++.++                   +|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence             10                              0111123578888888888777664                   589


Q ss_pred             EEcCCCCCCcceeeeeecCC---------CCcEEEEeccC---CeEEEEEcCCeEEEEeCCCCCCcccccccccc-----
Q 019384          126 CWDPRGASGQERTLVGTYPQ---------PERVYSLSLVG---NRLVVATAGRHVNVYDLRNMSQPEQRRESSLK-----  188 (342)
Q Consensus       126 iWd~~~~~~~~~~~~~~~~~---------~~~v~~~s~~~---~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~-----  188 (342)
                      .+|.+++..  ...+....+         ...+.....++   +.++.++.+|.+.++|.++++..........+     
T Consensus       287 AlD~~TG~~--~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~  364 (677)
T 1kb0_A          287 ALDPDTGKY--KWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY  364 (677)
T ss_dssp             EECTTTCCE--EEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred             EEECCCCCE--EEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence            999876543  222221111         11222333355   46788888999999999987643211110000     


Q ss_pred             ---ee-e------------------------EEEEEeeCCceEEEEccC-------------------------------
Q 019384          189 ---YQ-T------------------------RCVRCYPNGTGYALSSVE-------------------------------  209 (342)
Q Consensus       189 ---~~-~------------------------~~v~~~~~~~~~~~~s~~-------------------------------  209 (342)
                         .. +                        ..++++|++..+++...+                               
T Consensus       365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~  444 (677)
T 1kb0_A          365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK  444 (677)
T ss_dssp             CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred             CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence               00 0                        135677877777665431                               


Q ss_pred             ----------CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeee
Q 019384          210 ----------GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLY  279 (342)
Q Consensus       210 ----------~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~  279 (342)
                                ..-.|..||..+.+  ..|.....          .++....+..++..++.++.||.+++||.++++.+.
T Consensus       445 ~~~~~~~~~~~~g~l~A~D~~tG~--~~W~~~~~----------~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw  512 (677)
T 1kb0_A          445 FFNAEPPKSKPFGRLLAWDPVAQK--AAWSVEHV----------SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW  512 (677)
T ss_dssp             EECSSCCCSCCEEEEEEEETTTTE--EEEEEEES----------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccCCCCCccEEEEEeCCCCc--EEeecCCC----------CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence                      01345567765432  22322211          123344566678889999999999999999999987


Q ss_pred             ccC-CCCcceEEEEECCCCC-EEEEEEecccc-----CCCCCCCCCcEEEEEccC
Q 019384          280 QYS-KYPTSIAALSFSRDGR-LLAVASSYTFE-----EGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       280 ~~~-~~~~~V~~v~~spdg~-~las~s~~~~~-----~~~~~~~~~~~~~~~~~~  327 (342)
                      ++. ++.....-+.|++||+ ++++.+.+...     ..........++.+.+..
T Consensus       513 ~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          513 EAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             EEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             eeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence            765 3333446677889998 55554543211     111233356788888864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.11  E-value=4.2e-08  Score=90.01  Aligned_cols=282  Identities=11%  Similarity=-0.007  Sum_probs=160.8

Q ss_pred             CCCCeEEEEeC-C----CcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEe----------cCCcEEEEEeccCc
Q 019384           29 NHSDHLLVSSW-D----KSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSAS----------ADHTVRRLVFSHGK   92 (342)
Q Consensus        29 ~~~~~l~s~s~-D----gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s----------~D~~i~~w~~~~~~   92 (342)
                      ++++++..+.. +    ++|.++|..+.+....+.-...- .+.++++++ ++.+.          .++.|.++|..+.+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            46665554433 3    79999999998877665444344 899997775 44444          35688999988876


Q ss_pred             ee-ec--c--c---CCcceeEEEEeCCCCEEEEeeC--CCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc-CCeEEE
Q 019384           93 ED-IL--G--K---HDAPVRCIEYSYAAGQVITGSW--DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV-GNRLVV  161 (342)
Q Consensus        93 ~~-~~--~--~---h~~~V~~~~~~~~~~~l~sgs~--D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~-~~~~~~  161 (342)
                      .. .+  .  .   ....-..++|+||+++++.+..  +++|.+.|+.+...     +........ ..+.+. ...+++
T Consensus       161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv-----v~~I~v~g~-~~~~p~g~~~~v~  234 (426)
T 3c75_H          161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF-----DRMLDVPDC-YHIFPASPTVFYM  234 (426)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE-----EEEEECCSE-EEEEEEETTEEEE
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE-----EEEEEcCCc-eeeccCCCcEEEE
Confidence            32 22  1  1   1233457889999999988764  57899999875432     222111121 122232 245666


Q ss_pred             EEcCCeEEEEeCCCCCCcccc---cccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhc--ccceeeeEEec
Q 019384          162 ATAGRHVNVYDLRNMSQPEQR---RESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQA--KKYAFKCHRKS  236 (342)
Q Consensus       162 ~s~d~~v~iwd~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~--~~~~~~~h~~~  236 (342)
                      .+.|+++.+.++.+++.....   ...........+.+.+++..++..+..+.+  .++|.......  ..+.+..-...
T Consensus       235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V--~ViD~~~~~~~v~~~~~~~~~~~i  312 (426)
T 3c75_H          235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKI--FQADLTAEGATFRAPIEALTEAER  312 (426)
T ss_dssp             EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEE--EEEEECSSCEEECCCEESSCTTTG
T ss_pred             EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcE--EEEeccCCceEEeeeeeecccccc
Confidence            777888887887443221100   000000001123457777777777766654  55776422110  11110000000


Q ss_pred             CCCCceeeeeeEEEEcCCCCeEEEecC----------CCeEEEEeCCCceeeeccCCCCcceEEEEECCCCC-EEEEEEe
Q 019384          237 EAGRDIVYPVNAIAFHPIYGTFATGGC----------DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGR-LLAVASS  305 (342)
Q Consensus       237 ~~~~~~~~~v~~v~~sp~~~~l~sgs~----------Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~-~las~s~  305 (342)
                      ..+ ........++++|+++.++....          +++|.+.|..+.+.+.++.. ....++++|+|||+ +|.++..
T Consensus       313 ~~g-~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~  390 (426)
T 3c75_H          313 ADD-WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYALSA  390 (426)
T ss_dssp             GGT-EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEET
T ss_pred             ccc-cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcC
Confidence            000 00011234789999887665532          45899999999988877652 23579999999999 7776653


Q ss_pred             ccccCCCCCCCCCcEEEEEccCCccc
Q 019384          306 YTFEEGDKPHEPDAIFVRSVNEIEVK  331 (342)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (342)
                      ..          +.+-++....+.+.
T Consensus       391 ~s----------~~VsVID~~t~kvv  406 (426)
T 3c75_H          391 GT----------QTLHIYDAATGEEL  406 (426)
T ss_dssp             TT----------TEEEEEETTTCCEE
T ss_pred             CC----------CeEEEEECCCCCEE
Confidence            11          14666666554443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.10  E-value=1.7e-08  Score=88.10  Aligned_cols=187  Identities=10%  Similarity=0.054  Sum_probs=116.4

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee-c----CCceEEEEEeCCCCeEEE-----ecC------
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-H----GGPVLDCCFHDDSSGFSA-----SAD------   80 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~-h----~~~V~~~~~~~~~~~~s~-----s~D------   80 (342)
                      .+...+.+++|+++|+++++...++.|.+||..+++...... .    ...+.++++.+++.++.+     +.+      
T Consensus        66 ~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~  145 (296)
T 3e5z_A           66 HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG  145 (296)
T ss_dssp             SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC
T ss_pred             CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccc
Confidence            355678999999999988887778999999997766443321 1    234567889888877643     210      


Q ss_pred             -----CcEEEEEecc-CceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcc---eeeeeecCCCCcEEE
Q 019384           81 -----HTVRRLVFSH-GKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQE---RTLVGTYPQPERVYS  151 (342)
Q Consensus        81 -----~~i~~w~~~~-~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~---~~~~~~~~~~~~v~~  151 (342)
                           +.-.+|.+.. +....+..+......++|+|+++.+++.+.++.|.+||+.. .+..   ...+........-+.
T Consensus       146 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~-~g~~~~~~~~~~~~~~~p~~i~  224 (296)
T 3e5z_A          146 GEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA-RGETEYQGVHFTVEPGKTDGLR  224 (296)
T ss_dssp             CCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECS-SSCEEEEEEEECCSSSCCCSEE
T ss_pred             ccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECC-CCcCcCCCeEeeCCCCCCCeEE
Confidence                 1224555543 34444455666788999999999888888889999999862 1211   111211111112234


Q ss_pred             EeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEE-eeCCceEEEEccCC
Q 019384          152 LSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRC-YPNGTGYALSSVEG  210 (342)
Q Consensus       152 ~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~s~~~  210 (342)
                      ++.+++ +.+++ ++.|.+||... +.. .....+. . +.++++ .|+++.+++++.++
T Consensus       225 ~d~~G~-l~v~~-~~~v~~~~~~g-~~~-~~~~~~~-~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          225 VDAGGL-IWASA-GDGVHVLTPDG-DEL-GRVLTPQ-T-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             EBTTSC-EEEEE-TTEEEEECTTS-CEE-EEEECSS-C-CCEEEEESTTSCEEEEEETTE
T ss_pred             ECCCCC-EEEEc-CCeEEEECCCC-CEE-EEEECCC-C-ceeEEEECCCCCEEEEEcCCe
Confidence            555565 44444 88999999863 221 1111111 1 566777 57888888877653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.09  E-value=5e-08  Score=85.65  Aligned_cols=98  Identities=5%  Similarity=-0.081  Sum_probs=69.1

Q ss_pred             CCCCeEEEEEcCCCC-eEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEec-CCcEEEEEeccCceee
Q 019384           18 PSDGISNLRFSNHSD-HLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASA-DHTVRRLVFSHGKEDI   95 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~-~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~-D~~i~~w~~~~~~~~~   95 (342)
                      .........|+++++ ++++...++.|..|+.. +.......+.+.+.++++.+++.++.+.. ++.|.+|+.+ +....
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~  120 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHL  120 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEE
Confidence            344567899999998 56777788999999984 44444445667789999998888877664 4678888765 44332


Q ss_pred             ccc-----CCcceeEEEEeCCCCEEEE
Q 019384           96 LGK-----HDAPVRCIEYSYAAGQVIT  117 (342)
Q Consensus        96 ~~~-----h~~~V~~~~~~~~~~~l~s  117 (342)
                      +..     ....++.+++.++|...+|
T Consensus       121 ~~~~~~~~~~~~~~~i~~d~dG~l~~t  147 (305)
T 3dr2_A          121 LVGRYAGKRLNSPNDLIVARDGAIWFT  147 (305)
T ss_dssp             EECEETTEECSCCCCEEECTTSCEEEE
T ss_pred             EEeccCCCccCCCCCEEECCCCCEEEe
Confidence            221     1134677889998887776

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.09  E-value=1.6e-08  Score=99.16  Aligned_cols=232  Identities=16%  Similarity=0.132  Sum_probs=130.2

Q ss_pred             cCCceEEEEEeCCCCeEE--EecC----CcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCc---------
Q 019384           59 HGGPVLDCCFHDDSSGFS--ASAD----HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKS---------  123 (342)
Q Consensus        59 h~~~V~~~~~~~~~~~~s--~s~D----~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~---------  123 (342)
                      |...+.++.|+|+++.+.  .+..    .+|++||+.+++......+.....+++|+ |++.|+-++.|..         
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence            344677889999887543  2222    46899999988743221111113578999 9999988887743         


Q ss_pred             ----EEEEcCCCCCCcceeeeeecC-CCCcE--EEEeccCCeEEEEEcC----CeEEEEeCCCCCCcccccccccceeeE
Q 019384          124 ----LKCWDPRGASGQERTLVGTYP-QPERV--YSLSLVGNRLVVATAG----RHVNVYDLRNMSQPEQRRESSLKYQTR  192 (342)
Q Consensus       124 ----I~iWd~~~~~~~~~~~~~~~~-~~~~v--~~~s~~~~~~~~~s~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~  192 (342)
                          |++|++.+............. +....  ..++.+++.++.....    ..|.++|+.+.............. ..
T Consensus       206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~-~~  284 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA-DV  284 (693)
T ss_dssp             CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS-CE
T ss_pred             CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc-eE
Confidence                999998754332222222111 12222  3456667766544432    479999997653222222211111 12


Q ss_pred             EEEEeeCCceEEEEcc-CC-eEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecC-CC--eE
Q 019384          193 CVRCYPNGTGYALSSV-EG-RVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGC-DG--FV  267 (342)
Q Consensus       193 ~v~~~~~~~~~~~~s~-~~-~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~-Dg--~I  267 (342)
                      .. +++++..++..+. ++ ...|..+|+..........+..|..         .+.  .|+|+++.|+.... |+  .|
T Consensus       285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~---------~~~--~~s~~g~~lv~~~~~~g~~~l  352 (693)
T 3iuj_A          285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ---------QVL--TVHSGSGYLFAEYMVDATARV  352 (693)
T ss_dssp             EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS---------SCE--EEEEETTEEEEEEEETTEEEE
T ss_pred             EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC---------CEE--EEEEECCEEEEEEEECCeeEE
Confidence            22 5566666554443 22 3456678875432111112222221         122  78899988766554 44  78


Q ss_pred             EEEeCCCceeeeccC-CCCcceEEEEECCCCCEEEEEEe
Q 019384          268 NVWDGNNKKRLYQYS-KYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       268 ~iWd~~~~~~~~~~~-~~~~~V~~v~~spdg~~las~s~  305 (342)
                      ++||...+. ...+. .....+..++++||+..|+...+
T Consensus       353 ~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~s  390 (693)
T 3iuj_A          353 EQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFE  390 (693)
T ss_dssp             EEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEE
T ss_pred             EEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEec
Confidence            999987543 33332 23456888899999986665543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.07  E-value=3.6e-09  Score=95.82  Aligned_cols=173  Identities=16%  Similarity=0.143  Sum_probs=121.6

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-----------eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEE
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-----------LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLV   87 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-----------~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~   87 (342)
                      ...++.|++++...++++|+.|+ ++||+++.-.           ......+.+ |+.++| ++..++.+ .++.|++|+
T Consensus        37 ~~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           37 FASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             SSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-ETTEEEEE-ESSEEEEEE
T ss_pred             cccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE-CCCEEEEE-cCCcEEEEE
Confidence            34799999999999999999985 6669964321           112345667 999999 44444455 889999999


Q ss_pred             eccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC
Q 019384           88 FSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR  166 (342)
Q Consensus        88 ~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~  166 (342)
                      +.+.. ......|...|.++.+.+.  .++.++.||+|.+||+......   ..     ...+.+++++++.++.+..|+
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~---~~-----~~~Vs~v~WSpkG~~vg~~dg  182 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK---QL-----AQNVTSFDVTNSQLAVLLKDR  182 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE---EE-----EESEEEEEECSSEEEEEETTS
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc---cc-----cCCceEEEEcCCceEEEEcCC
Confidence            87655 2345567777888877653  4889999999999999743321   11     134667888777789999999


Q ss_pred             eEEEEeCCCCCCc-cccc------c--cccceeeEEEEEeeCCceEEE
Q 019384          167 HVNVYDLRNMSQP-EQRR------E--SSLKYQTRCVRCYPNGTGYAL  205 (342)
Q Consensus       167 ~v~iwd~~~~~~~-~~~~------~--~~~~~~~~~v~~~~~~~~~~~  205 (342)
                      ++++|+....... ....      .  .....++.++.|.+++..+++
T Consensus       183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            9999987664310 0001      0  013467889999998887664

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.04  E-value=3.2e-10  Score=102.73  Aligned_cols=204  Identities=16%  Similarity=0.093  Sum_probs=107.8

Q ss_pred             CCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCcee-ecccCCc-ceeEE
Q 019384           30 HSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKED-ILGKHDA-PVRCI  106 (342)
Q Consensus        30 ~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~-~~~~h~~-~V~~~  106 (342)
                      ++.+|++++.||.|+.||..+++++..+.. +.+.+..+..++. +++++.|+.+..||..+++.. .+..+.. .+.+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            578899999999999999999887665544 5665555555554 456689999999999777632 2222211 11110


Q ss_pred             EEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccc
Q 019384          107 EYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESS  186 (342)
Q Consensus       107 ~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~  186 (342)
                      -...+++.|++++.|+.|..||.+++...  ..+..   .. ...++..++.+++++.++.|..||.++++..-.     
T Consensus        87 p~~~~~~~v~~g~~dg~v~a~D~~tG~~~--w~~~~---~~-~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~-----  155 (369)
T 2hz6_A           87 PCRSSDGILYMGKKQDIWYVIDLLTGEKQ--QTLSS---AF-ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN-----  155 (369)
T ss_dssp             SCC-----CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCE-----
T ss_pred             ceEecCCEEEEEeCCCEEEEEECCCCcEE--EEecC---CC-cccccccCCEEEEEecCCEEEEEECCCCCEEEe-----
Confidence            00113457888899999999998765431  11111   11 112333556777788888888888876532110     


Q ss_pred             cceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC---CCeEEEecC
Q 019384          187 LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI---YGTFATGGC  263 (342)
Q Consensus       187 ~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~---~~~l~sgs~  263 (342)
                                                      .           ..+.           ....++.++   ...++.++.
T Consensus       156 --------------------------------~-----------~~~~-----------~~~~~~~~~~~~~~~v~~~~~  181 (369)
T 2hz6_A          156 --------------------------------A-----------TYFD-----------YAASLPEDDVDYKMSHFVSNG  181 (369)
T ss_dssp             --------------------------------E-----------EEEE-----------ECCBCCCCCTTCCCCEEEEET
T ss_pred             --------------------------------E-----------eccc-----------ccCccccCCccccceEEEECC
Confidence                                            0           0000           000111221   145667888


Q ss_pred             CCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCE
Q 019384          264 DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRL  299 (342)
Q Consensus       264 Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~  299 (342)
                      ||.|+.||.++++.+.++......+....+++||..
T Consensus       182 dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          182 DGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR  217 (369)
T ss_dssp             SCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred             CCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence            999999999999887766533333355677888874

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.03  E-value=5.3e-08  Score=89.30  Aligned_cols=242  Identities=12%  Similarity=0.048  Sum_probs=142.2

Q ss_pred             EEEEcCCCCeEEEEe----------CCCcEEEEECCCceeeeeeec--------CCceEEEEEeCCCCe-EEEec--CCc
Q 019384           24 NLRFSNHSDHLLVSS----------WDKSVRLYDASANVLRGEFMH--------GGPVLDCCFHDDSSG-FSASA--DHT   82 (342)
Q Consensus        24 ~l~fs~~~~~l~s~s----------~Dgti~vwd~~~~~~~~~~~h--------~~~V~~~~~~~~~~~-~s~s~--D~~   82 (342)
                      .++||||+++|..+.          .+++|.++|..+.+....+.-        ......+.|+++++. +.+..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            799999999888775          478999999998776554422        133457889887765 45543  578


Q ss_pred             EEEEEeccCcee-ecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCCCCCCccee--eeeecCCCC-cEEEEeccCC
Q 019384           83 VRRLVFSHGKED-ILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPRGASGQERT--LVGTYPQPE-RVYSLSLVGN  157 (342)
Q Consensus        83 i~~w~~~~~~~~-~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~~~~~~~~~--~~~~~~~~~-~v~~~s~~~~  157 (342)
                      |.+.|..+.+.. .+..- .   +....|++ ..+++.+.|+++.+.+..+.......  .+.....+. ....+..+++
T Consensus       202 VsVID~~t~kvv~~I~v~-g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~  277 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVP-D---CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG  277 (426)
T ss_dssp             EEEEETTTTEEEEEEECC-S---EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred             EEEEECCCCeEEEEEEcC-C---ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence            999999887632 22110 0   12223332 44556666777666666322110000  000000000 0123455667


Q ss_pred             eEEEEEcCCeEEEEeCCCCCCccccc-------ccccceee---EEEEEeeCCceEEEEccC--------CeEEEEEeec
Q 019384          158 RLVVATAGRHVNVYDLRNMSQPEQRR-------ESSLKYQT---RCVRCYPNGTGYALSSVE--------GRVAMEFFDL  219 (342)
Q Consensus       158 ~~~~~s~d~~v~iwd~~~~~~~~~~~-------~~~~~~~~---~~v~~~~~~~~~~~~s~~--------~~~~i~~~d~  219 (342)
                      .++..+..+++.+.|+..........       ........   ..++++|+++.+++...+        ....+.++|.
T Consensus       278 ~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~  357 (426)
T 3c75_H          278 RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA  357 (426)
T ss_dssp             EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC
Confidence            77777778889999986532110000       00000111   125788988876665421        2345677998


Q ss_pred             hhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC-eEEEec-CCCeEEEEeCCCceeeecc
Q 019384          220 SEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG-TFATGG-CDGFVNVWDGNNKKRLYQY  281 (342)
Q Consensus       220 ~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs-~Dg~I~iWd~~~~~~~~~~  281 (342)
                      .+.+....+.+.            .....++|+||++ .+++.. .+++|.++|..+++.+.++
T Consensus       358 ~T~kvv~~I~vg------------~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          358 ETGERINKIELG------------HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TTCCEEEEEEEE------------EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCCeEEEEEECC------------CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            654433333221            1367899999998 777776 5999999999999988775

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.00  E-value=1.1e-07  Score=81.36  Aligned_cols=194  Identities=9%  Similarity=-0.011  Sum_probs=122.4

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee-ecCCceEEEEEeCCCCeEEE-ecCCcEEEEEeccCceee-
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF-MHGGPVLDCCFHDDSSGFSA-SADHTVRRLVFSHGKEDI-   95 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~-~h~~~V~~~~~~~~~~~~s~-s~D~~i~~w~~~~~~~~~-   95 (342)
                      ...+.+++|+++++++++.. ++.|.+||..+....... .....+.++++.+++.++.+ ..++.|.+|+..+..... 
T Consensus        66 ~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~  144 (270)
T 1rwi_B           66 LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL  144 (270)
T ss_dssp             CCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred             cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee
Confidence            35788999999998766655 899999998765543322 22356889999877777654 557788888654433222 


Q ss_pred             cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc--CCeEEEEEcCCeEEEEeC
Q 019384           96 LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV--GNRLVVATAGRHVNVYDL  173 (342)
Q Consensus        96 ~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~d~~v~iwd~  173 (342)
                      .......+.+++++++++.+++...++.|.+||......   ... ..........+..+  +..+++...++.|.+||.
T Consensus       145 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---~~~-~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~  220 (270)
T 1rwi_B          145 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ---VVL-PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA  220 (270)
T ss_dssp             CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE---EEC-CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECT
T ss_pred             ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce---Eee-cccCCCCceEEEECCCCCEEEEECCCCcEEEEcC
Confidence            222334678899999998777777788999999764321   111 11111234445554  434444445778999998


Q ss_pred             CCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechh
Q 019384          174 RNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSE  221 (342)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~  221 (342)
                      .......  ........+..+++.+++..+++...++.+.  +++..+
T Consensus       221 ~~~~~~~--~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~--~~~~~~  264 (270)
T 1rwi_B          221 GSTTSTV--LPFTGLNTPLAVAVDSDRTVYVADRGNDRVV--KLTSLE  264 (270)
T ss_dssp             TCSCCEE--CCCCSCSCEEEEEECTTCCEEEEEGGGTEEE--EECCCG
T ss_pred             CCCccee--eccCCCCCceeEEECCCCCEEEEECCCCEEE--EEcCCC
Confidence            6542211  1111112467888999998667767777654  476643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.00  E-value=5.1e-07  Score=78.13  Aligned_cols=223  Identities=8%  Similarity=-0.002  Sum_probs=136.1

Q ss_pred             CCceEEEEEeCCCCeEEEe-cCCcEEEEEeccCceee--cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcc
Q 019384           60 GGPVLDCCFHDDSSGFSAS-ADHTVRRLVFSHGKEDI--LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQE  136 (342)
Q Consensus        60 ~~~V~~~~~~~~~~~~s~s-~D~~i~~w~~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~  136 (342)
                      ...+.++.+.+++.++.+. .++.|.+++.. ++...  +..+...+.++++.+++...++...++.|..||.. +..  
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~--   94 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF--   94 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE--
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe--
Confidence            4567888888777776555 57889899877 44322  23344678999999988877777778899999975 221  


Q ss_pred             eeeeeecCCCCcEEEEecc--CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEE
Q 019384          137 RTLVGTYPQPERVYSLSLV--GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAM  214 (342)
Q Consensus       137 ~~~~~~~~~~~~v~~~s~~--~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i  214 (342)
                       ..+........+..+..+  ++.+++...++.|..+|.. +... .............+.+.++++.+++...++.+  
T Consensus        95 -~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i--  169 (300)
T 2qc5_A           95 -TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSI--  169 (300)
T ss_dssp             -EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEE--
T ss_pred             -EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEEecCCCeE--
Confidence             111111111334445443  4444444446789999876 3221 11111112346778888888855555445544  


Q ss_pred             EEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceee-eccCCCCcceEEEEE
Q 019384          215 EFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRL-YQYSKYPTSIAALSF  293 (342)
Q Consensus       215 ~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~-~~~~~~~~~V~~v~~  293 (342)
                      ..+|.. . ....+.+..         ....+..+++.++|..+++....+.|.+||. +++.. ..+......+.++++
T Consensus       170 ~~~~~~-g-~~~~~~~~~---------~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~  237 (300)
T 2qc5_A          170 GRITNT-G-KLEEYPLPT---------NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITA  237 (300)
T ss_dssp             EEECTT-C-CEEEEECSS---------TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred             EEECCC-C-cEEEeeCCC---------CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEE
Confidence            457652 1 111111100         0113678999999987777777889999998 34332 223344567899999


Q ss_pred             CCCCCEEEEE
Q 019384          294 SRDGRLLAVA  303 (342)
Q Consensus       294 spdg~~las~  303 (342)
                      +++|++.++.
T Consensus       238 d~~g~l~v~~  247 (300)
T 2qc5_A          238 GKNSEIWFTE  247 (300)
T ss_dssp             CSTTCEEEEE
T ss_pred             CCCCCEEEec
Confidence            9999976654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.95  E-value=3.7e-08  Score=85.39  Aligned_cols=178  Identities=9%  Similarity=-0.037  Sum_probs=112.4

Q ss_pred             CCEEEEeeCCCcEEEEcCCCCCCcceeeeeecC-CCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCccccccccccee
Q 019384          112 AGQVITGSWDKSLKCWDPRGASGQERTLVGTYP-QPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQ  190 (342)
Q Consensus       112 ~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~  190 (342)
                      ++.|++++.|+.|.+||.++++.  ...+.... .......+..+++.++  +.++.|..||. +++...+. .......
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~--~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~-~~~~~~~   78 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEI--VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNI-AAPAGCE   78 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEE--EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEE-ECCTTCE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeE--EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEE-cCCCCcc
Confidence            56899999999999999865432  22222211 1223445666776655  56788999998 55432221 1111234


Q ss_pred             eEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEE
Q 019384          191 TRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNV  269 (342)
Q Consensus       191 ~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~i  269 (342)
                      +.++...++|+.+++.+. ++  .+..+|. +.+....+.+..  .   ..........+++.++|++|++...++.|..
T Consensus        79 ~~~~~~~~dG~~lv~~~~~~~--~v~~vd~-~Gk~l~~~~~~~--~---~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~  150 (276)
T 3no2_A           79 MQTARILPDGNALVAWCGHPS--TILEVNM-KGEVLSKTEFET--G---IERPHAQFRQINKNKKGNYLVPLFATSEVRE  150 (276)
T ss_dssp             EEEEEECTTSCEEEEEESTTE--EEEEECT-TSCEEEEEEECC--S---CSSGGGSCSCCEECTTSCEEEEETTTTEEEE
T ss_pred             ccccEECCCCCEEEEecCCCC--EEEEEeC-CCCEEEEEeccC--C---CCcccccccCceECCCCCEEEEecCCCEEEE
Confidence            567778899998877665 43  3445664 222222222110  0   0001113455678999999999999999999


Q ss_pred             EeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          270 WDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       270 Wd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                      ||.+ ++.+.++... ....++.+.++|.+|++++.
T Consensus       151 ~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~  184 (276)
T 3no2_A          151 IAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGD  184 (276)
T ss_dssp             ECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBT
T ss_pred             ECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCC
Confidence            9998 8888777643 45678889999999887654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.90  E-value=4.4e-07  Score=81.75  Aligned_cols=245  Identities=11%  Similarity=-0.053  Sum_probs=139.0

Q ss_pred             eEEEEeCCC----cEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEe----------cCCcEEEEEeccCcee-ec
Q 019384           33 HLLVSSWDK----SVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSAS----------ADHTVRRLVFSHGKED-IL   96 (342)
Q Consensus        33 ~l~s~s~Dg----ti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s----------~D~~i~~w~~~~~~~~-~~   96 (342)
                      ..++...++    +|.++|..+.+.+..+.-...- .+.++++++ ++.+.          .++.|.+||..+.+.. .+
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I  112 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI  112 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEE
Confidence            344555555    8889999998877665333233 799997765 45554          3678999999988742 22


Q ss_pred             ccC-------CcceeEEEEeCCCCEEEEeeC--CCcEEE--EcCCCCCCcceeeee--------------ecCCCCcEEE
Q 019384           97 GKH-------DAPVRCIEYSYAAGQVITGSW--DKSLKC--WDPRGASGQERTLVG--------------TYPQPERVYS  151 (342)
Q Consensus        97 ~~h-------~~~V~~~~~~~~~~~l~sgs~--D~~I~i--Wd~~~~~~~~~~~~~--------------~~~~~~~v~~  151 (342)
                      ..+       ......++++||+++++.+..  +..+.+  +|+.+  . ......              .......+..
T Consensus       113 ~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v-~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~  189 (368)
T 1mda_H          113 ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--D-QLTKSASCFHIHPGAAATHYLGSCPASLAA  189 (368)
T ss_dssp             EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--E-EEEECSSCCCCEEEETTEEECCCCTTSCEE
T ss_pred             ECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--c-eEEECCCceEEccCCCeEEEEEcCCCCEEE
Confidence            211       123567999999999887764  467888  99854  0 000000              0000000001


Q ss_pred             E----------------------------eccCCeEEEEEcCCeEEEEeCCCCCCcccc-ccc------ccceee---EE
Q 019384          152 L----------------------------SLVGNRLVVATAGRHVNVYDLRNMSQPEQR-RES------SLKYQT---RC  193 (342)
Q Consensus       152 ~----------------------------s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~-~~~------~~~~~~---~~  193 (342)
                      +                            ...+..++..+. +.+.+.|+......... ...      ......   ..
T Consensus       190 vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~  268 (368)
T 1mda_H          190 SDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM  268 (368)
T ss_dssp             EECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSC
T ss_pred             EECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCccee
Confidence            1                            112223344444 56677776532111000 000      000011   12


Q ss_pred             EEEeeCCceEEEEcc-C-C-----eEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCe-EEEec-CC
Q 019384          194 VRCYPNGTGYALSSV-E-G-----RVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGT-FATGG-CD  264 (342)
Q Consensus       194 v~~~~~~~~~~~~s~-~-~-----~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~-l~sgs-~D  264 (342)
                      +.++|+++.++++.. . +     .-.+.++|..+.+....+.+.            .....++|+|||+. +++.. .+
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg------------~~p~gi~~s~Dg~~l~va~~~~~  336 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG------------HDSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE------------EEECEEEECCSSSCEEEEEETTT
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC------------CCcceEEECCCCCEEEEEccCCC
Confidence            678899888776644 2 2     112347898654333332221            13678999999984 56666 59


Q ss_pred             CeEEEEeCCCceeeeccCCCCcceEEEEECC
Q 019384          265 GFVNVWDGNNKKRLYQYSKYPTSIAALSFSR  295 (342)
Q Consensus       265 g~I~iWd~~~~~~~~~~~~~~~~V~~v~~sp  295 (342)
                      ++|.++|..+++.+.++.... .-+.+++.+
T Consensus       337 ~~VsVID~~t~kvv~~I~vg~-~P~~i~~~~  366 (368)
T 1mda_H          337 EVLDIYDAASDQDQSSVELDK-GPESLSVQN  366 (368)
T ss_dssp             TEEEEEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred             CeEEEEECCCCcEEEEEECCC-CCCEEEeec
Confidence            999999999999988876443 345666654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.81  E-value=1.1e-06  Score=76.67  Aligned_cols=186  Identities=10%  Similarity=-0.018  Sum_probs=112.1

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeec-----CCceEEEEEeCCCCeEEEecC----------CcE
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMH-----GGPVLDCCFHDDSSGFSASAD----------HTV   83 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h-----~~~V~~~~~~~~~~~~s~s~D----------~~i   83 (342)
                      ...+.+++|+++|+++++.  ++.|.+||..++++......     ...+.++++.+++.++.++..          ...
T Consensus        53 ~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~  130 (297)
T 3g4e_A           53 DAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQG  130 (297)
T ss_dssp             SSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCE
T ss_pred             CCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCc
Confidence            4679999999999966543  66899999987765443322     234788999888887655421          334


Q ss_pred             EEEEeccC-ceeecccCCcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCCCcc--eeeeeecC-CCCcEE--EEeccC
Q 019384           84 RRLVFSHG-KEDILGKHDAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGASGQE--RTLVGTYP-QPERVY--SLSLVG  156 (342)
Q Consensus        84 ~~w~~~~~-~~~~~~~h~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~~~~--~~~~~~~~-~~~~v~--~~s~~~  156 (342)
                      .+|.+... ....+..+....+.++|+|+++.| ++.+.++.|.+||+....+..  ...+.... ......  .++.++
T Consensus       131 ~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G  210 (297)
T 3g4e_A          131 ALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG  210 (297)
T ss_dssp             EEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS
T ss_pred             EEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC
Confidence            56666533 222233333456789999999866 566778899999864222211  11121111 112233  344456


Q ss_pred             CeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEe-eCCceEEEEcc
Q 019384          157 NRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCY-PNGTGYALSSV  208 (342)
Q Consensus       157 ~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~  208 (342)
                      +..++...++.|..||..+++..... ..+ ...+++++|. |+++.+++++.
T Consensus       211 ~lwva~~~~~~v~~~d~~tG~~~~~i-~~p-~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          211 KLWVACYNGGRVIRLDPVTGKRLQTV-KLP-VDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             CEEEEEETTTEEEEECTTTCCEEEEE-ECS-SSBEEEEEEESGGGCEEEEEEB
T ss_pred             CEEEEEcCCCEEEEEcCCCceEEEEE-ECC-CCCceEEEEeCCCCCEEEEEcC
Confidence            55555566778999999866432211 111 1356788887 78776665554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.74  E-value=5e-07  Score=81.50  Aligned_cols=232  Identities=13%  Similarity=0.101  Sum_probs=129.6

Q ss_pred             CCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecccCCcce------
Q 019384           30 HSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPV------  103 (342)
Q Consensus        30 ~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V------  103 (342)
                      ++..+..++.|+.|..+|..+++.+......+.+.+.....++.++.++.++.+..+|..+++..-.......+      
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~  181 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE  181 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence            45677788999999999999887665444333332222223567788888999999998887643211111111      


Q ss_pred             eEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCC---Cc---E-EEEeccCCeEEEEEcCCeEEEEeCCCC
Q 019384          104 RCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQP---ER---V-YSLSLVGNRLVVATAGRHVNVYDLRNM  176 (342)
Q Consensus       104 ~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~---~~---v-~~~s~~~~~~~~~s~d~~v~iwd~~~~  176 (342)
                      ......  +..++.++.++.|..+|.+++..............   ..   + ......++.+++++.++.+..+|.+++
T Consensus       182 ~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG  259 (376)
T 3q7m_A          182 SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG  259 (376)
T ss_dssp             CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC
T ss_pred             CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC
Confidence            111222  45788888999999999876432111111000000   00   0 011123567888888999999999887


Q ss_pred             CCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC
Q 019384          177 SQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG  256 (342)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~  256 (342)
                      +......   .. ....+.  .++..+++++.++.+  ..+|..+.+.  .|....    ... .   .+.+...  .+.
T Consensus       260 ~~~w~~~---~~-~~~~~~--~~~~~l~~~~~~g~l--~~~d~~tG~~--~w~~~~----~~~-~---~~~~~~~--~~~  319 (376)
T 3q7m_A          260 QIMWKRE---LG-SVNDFI--VDGNRIYLVDQNDRV--MALTIDGGVT--LWTQSD----LLH-R---LLTSPVL--YNG  319 (376)
T ss_dssp             CEEEEEC---CC-CEEEEE--EETTEEEEEETTCCE--EEEETTTCCE--EEEECT----TTT-S---CCCCCEE--ETT
T ss_pred             cEEeecc---CC-CCCCce--EECCEEEEEcCCCeE--EEEECCCCcE--EEeecc----cCC-C---cccCCEE--ECC
Confidence            5432211   11 112222  234556666666654  4577654321  221110    000 0   1111222  256


Q ss_pred             eEEEecCCCeEEEEeCCCceeeeccCC
Q 019384          257 TFATGGCDGFVNVWDGNNKKRLYQYSK  283 (342)
Q Consensus       257 ~l~sgs~Dg~I~iWd~~~~~~~~~~~~  283 (342)
                      .|+.++.+|.|+++|.++++.+.....
T Consensus       320 ~l~v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          320 NLVVGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEec
Confidence            788899999999999999987765543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.73  E-value=2.9e-06  Score=76.47  Aligned_cols=231  Identities=13%  Similarity=-0.012  Sum_probs=129.3

Q ss_pred             CCCeEEEEeCCCcEEEEECCCceeeeeeec----------CCceEEEEEeCCCCeEEEecCCcEEEEEeccCceee-ccc
Q 019384           30 HSDHLLVSSWDKSVRLYDASANVLRGEFMH----------GGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDI-LGK   98 (342)
Q Consensus        30 ~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h----------~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~-~~~   98 (342)
                      ++..|..++.++.|..+|..+++.+.....          ...+.+.....++.++.++.++.+..+|..+++..- ...
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            356788888999999999988876544433          223333333456778888999999999988877431 111


Q ss_pred             CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCc----EEEEeccCCeEEEEEcCCeEEEEeCC
Q 019384           99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPER----VYSLSLVGNRLVVATAGRHVNVYDLR  174 (342)
Q Consensus        99 h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~----v~~~s~~~~~~~~~s~d~~v~iwd~~  174 (342)
                      ...........  ++.++.++.++.|..+|.+++...  ...... ....    .......++.+++++.++.+..+|..
T Consensus       132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~--W~~~~~-~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~  206 (376)
T 3q7m_A          132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVK--WTVNLD-MPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLME  206 (376)
T ss_dssp             SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEE--EEEECC-C-----CCCCCCEEETTEEEECCTTTEEEEEETT
T ss_pred             CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEE--EEEeCC-CCceeecCCCCcEEECCEEEEEcCCCEEEEEECC
Confidence            11111111222  457888889999999998765321  111110 0000    01112235677888888999999998


Q ss_pred             CCCCccccccccccee--eEE---EEEe--eCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384          175 NMSQPEQRRESSLKYQ--TRC---VRCY--PNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN  247 (342)
Q Consensus       175 ~~~~~~~~~~~~~~~~--~~~---v~~~--~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  247 (342)
                      +++.............  ...   +...  ..+..+++++.++.+  ..+|..+...  .|....      .     ...
T Consensus       207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l--~~~d~~tG~~--~w~~~~------~-----~~~  271 (376)
T 3q7m_A          207 QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNL--TALDLRSGQI--MWKREL------G-----SVN  271 (376)
T ss_dssp             TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCE--EEEETTTCCE--EEEECC------C-----CEE
T ss_pred             CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEE--EEEECCCCcE--EeeccC------C-----CCC
Confidence            8754322111100000  000   0001  123456666666654  4577643322  122110      0     122


Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC
Q 019384          248 AIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS  282 (342)
Q Consensus       248 ~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  282 (342)
                      .+..  ++..|+.++.++.|..+|.++++.+....
T Consensus       272 ~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          272 DFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             EEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred             CceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence            2333  36678888889999999999988776544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.71  E-value=2.6e-06  Score=74.36  Aligned_cols=196  Identities=10%  Similarity=0.060  Sum_probs=112.9

Q ss_pred             CCCCeEEEEEcCC-CCeEEEEeCCCcEEEEECCCceeeee-ee-----cCCceEEEEEeCCCCeEEEec-C---------
Q 019384           18 PSDGISNLRFSNH-SDHLLVSSWDKSVRLYDASANVLRGE-FM-----HGGPVLDCCFHDDSSGFSASA-D---------   80 (342)
Q Consensus        18 ~~~~V~~l~fs~~-~~~l~s~s~Dgti~vwd~~~~~~~~~-~~-----h~~~V~~~~~~~~~~~~s~s~-D---------   80 (342)
                      +...+..++++++ ++++++. .++.|.+||.. ++.... ..     ....+.++++.+++.++.++. +         
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            3467999999999 6655544 44578999988 655433 21     123478899988777765443 3         


Q ss_pred             ------CcEEEEEeccCceeecccCCcceeEEEEe----CCCCEE-EEeeCCCcEEEEcCC-CCCCcceeeeeecCCC--
Q 019384           81 ------HTVRRLVFSHGKEDILGKHDAPVRCIEYS----YAAGQV-ITGSWDKSLKCWDPR-GASGQERTLVGTYPQP--  146 (342)
Q Consensus        81 ------~~i~~w~~~~~~~~~~~~h~~~V~~~~~~----~~~~~l-~sgs~D~~I~iWd~~-~~~~~~~~~~~~~~~~--  146 (342)
                            +.+..++.. +....+..+......++++    ++++.| ++...++.|.+||++ .+.......+......  
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~  225 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             cccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence                  344444443 3333333333456889999    988655 455678899999975 2211001111111111  


Q ss_pred             CcEEEEe--ccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc-cCCeEEEEEeech
Q 019384          147 ERVYSLS--LVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLS  220 (342)
Q Consensus       147 ~~v~~~s--~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~  220 (342)
                      .....+.  .+++.+++...++.|.+||..+++.... ...+ ...+.++++.+++..+++++ .++.+  ..|+..
T Consensus       226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~-~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~l--~~~~~~  298 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMR-IRCP-FEKPSNLHFKPQTKTIFVTEHENNAV--WKFEWQ  298 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEE-EECS-SSCEEEEEECTTSSEEEEEETTTTEE--EEEECS
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEE-EeCC-CCCceeEEECCCCCEEEEEeCCCCeE--EEEeCC
Confidence            2233344  4455555555778999999875432211 1111 13467888889988555554 44444  446653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.70  E-value=4.3e-06  Score=74.05  Aligned_cols=185  Identities=16%  Similarity=0.039  Sum_probs=107.6

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeec-----CCceEEEEEeCCCCeEEEecC-----CcEEEEEe
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMH-----GGPVLDCCFHDDSSGFSASAD-----HTVRRLVF   88 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h-----~~~V~~~~~~~~~~~~s~s~D-----~~i~~w~~   88 (342)
                      ...|.+++|+++++++++. .+ .|.+||..++++......     ...+.++.+.+++.++.++.+     ....+|.+
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~  166 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  166 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence            3579999999999877754 44 499999987765433221     235788999888877655432     23445555


Q ss_pred             ccCceeecccCCcceeEEEEeCCCCEE-EEeeCCCcEEEEcCC--CC-CCcceeeeeecC-CCCcEEEEec--cCCeEEE
Q 019384           89 SHGKEDILGKHDAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPR--GA-SGQERTLVGTYP-QPERVYSLSL--VGNRLVV  161 (342)
Q Consensus        89 ~~~~~~~~~~h~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~--~~-~~~~~~~~~~~~-~~~~v~~~s~--~~~~~~~  161 (342)
                      ..++...+..+......++|+|+++.| ++.+.++.|.+||++  ++ .......+.... .......+..  +++..++
T Consensus       167 ~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva  246 (326)
T 2ghs_A          167 AKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA  246 (326)
T ss_dssp             ETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE
T ss_pred             eCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE
Confidence            434333333333456789999999866 455667899999975  33 211111121111 1122334444  4544444


Q ss_pred             EEcCCeEEEEeCCCCCCcccccccccceeeEEEEEe-eCCceEEEEcc
Q 019384          162 ATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCY-PNGTGYALSSV  208 (342)
Q Consensus       162 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~  208 (342)
                      ...++.|..||.. ++.. .....+ ...+.++++. ++++.+++++.
T Consensus       247 ~~~~~~v~~~d~~-g~~~-~~i~~~-~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          247 RWGEGAVDRYDTD-GNHI-ARYEVP-GKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EETTTEEEEECTT-CCEE-EEEECS-CSBEEEEEEESTTSCEEEEEEB
T ss_pred             EeCCCEEEEECCC-CCEE-EEEECC-CCCcEEEEEecCCCCEEEEEec
Confidence            4456789999983 3221 111111 1246788887 77766655543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.67  E-value=8.6e-06  Score=79.41  Aligned_cols=289  Identities=12%  Similarity=0.072  Sum_probs=158.8

Q ss_pred             CCeEEEEeCCCcEEEEECCCceeeeeeecC-----CceEEEEEeCCCCeEEEec------CCcEEEEEeccCceee-c--
Q 019384           31 SDHLLVSSWDKSVRLYDASANVLRGEFMHG-----GPVLDCCFHDDSSGFSASA------DHTVRRLVFSHGKEDI-L--   96 (342)
Q Consensus        31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~-----~~V~~~~~~~~~~~~s~s~------D~~i~~w~~~~~~~~~-~--   96 (342)
                      +.+|+.++.|+.|..+|..+++++......     ..+.+.-...++.++.++.      ++.+..+|..+++..- +  
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            467888889999999999988765543221     1111111112455555443      4778888887776321 1  


Q ss_pred             -cc----------------------------CCcceeEEEEeCCCCEEEEeeCCC-------------------cEEEEc
Q 019384           97 -GK----------------------------HDAPVRCIEYSYAAGQVITGSWDK-------------------SLKCWD  128 (342)
Q Consensus        97 -~~----------------------------h~~~V~~~~~~~~~~~l~sgs~D~-------------------~I~iWd  128 (342)
                       .+                            +......+++.++.++++.++.++                   .|..+|
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD  276 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence             00                            111122468888888888887766                   389999


Q ss_pred             CCCCCCcceeeeeecCC-------CC--cEEEEeccCC---eEEEEEcCCeEEEEeCCCCCCcccccccc------c---
Q 019384          129 PRGASGQERTLVGTYPQ-------PE--RVYSLSLVGN---RLVVATAGRHVNVYDLRNMSQPEQRRESS------L---  187 (342)
Q Consensus       129 ~~~~~~~~~~~~~~~~~-------~~--~v~~~s~~~~---~~~~~s~d~~v~iwd~~~~~~~~~~~~~~------~---  187 (342)
                      .+++..  ........+       ..  ....+..+++   .++.++.++.+.++|..+++.........      +   
T Consensus       277 ~~tG~~--~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~  354 (668)
T 1kv9_A          277 PDTGKL--AWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA  354 (668)
T ss_dssp             TTTCCE--EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred             CCCCce--eeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence            876543  222221111       11  1223344554   47778889999999998875431100000      0   


Q ss_pred             cee-------------------------eEEEEEeeCCceEEEEcc----------------------------------
Q 019384          188 KYQ-------------------------TRCVRCYPNGTGYALSSV----------------------------------  208 (342)
Q Consensus       188 ~~~-------------------------~~~v~~~~~~~~~~~~s~----------------------------------  208 (342)
                      ...                         -..++++|+...+.+...                                  
T Consensus       355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~  434 (668)
T 1kv9_A          355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA  434 (668)
T ss_dssp             TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred             cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence            000                         001345565554443211                                  


Q ss_pred             CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCc-c
Q 019384          209 EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPT-S  287 (342)
Q Consensus       209 ~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~-~  287 (342)
                      ...-.+..||..+.+  ..|....+.          +.....+...+..++.|+.|+.+++||.++++.+..+..... .
T Consensus       435 ~~~g~l~A~D~~tG~--~~W~~~~~~----------~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~  502 (668)
T 1kv9_A          435 VVSGALLAWDPVKQK--AAWKVPYPT----------HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIV  502 (668)
T ss_dssp             GCEEEEEEEETTTTE--EEEEEEESS----------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             CccceEEEEeCCCCc--EEEEccCCC----------CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcc
Confidence            011334556664332  222222110          122223444678888999999999999999998876653322 1


Q ss_pred             eEEEEECCCCC-EEEEEEecccc---------CCCCCCCCCcEEEEEccCCccccC
Q 019384          288 IAALSFSRDGR-LLAVASSYTFE---------EGDKPHEPDAIFVRSVNEIEVKPK  333 (342)
Q Consensus       288 V~~v~~spdg~-~las~s~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  333 (342)
                      -.-+.+..||+ |++.++..+..         .-.....++.|+++.+.....-|.
T Consensus       503 ~~p~~~~~~G~~yva~~~G~g~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~p~  558 (668)
T 1kv9_A          503 AAPMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKAQLPP  558 (668)
T ss_dssp             SCCEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCCCCCCC
T ss_pred             cCceEEEECCEEEEEEEecCCCccccccccccccccCCCCCeEEEEEcCccCCCCC
Confidence            13455667888 77766653221         112334577899998865444444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.63  E-value=7.5e-06  Score=74.72  Aligned_cols=228  Identities=13%  Similarity=0.029  Sum_probs=122.1

Q ss_pred             EEEecCCcEEEEEeccCc-----eeecc------cCC-cceeEEEEeCCCCEEEEeeCC------CcEEEEcCCCCCCcc
Q 019384           75 FSASADHTVRRLVFSHGK-----EDILG------KHD-APVRCIEYSYAAGQVITGSWD------KSLKCWDPRGASGQE  136 (342)
Q Consensus        75 ~s~s~D~~i~~w~~~~~~-----~~~~~------~h~-~~V~~~~~~~~~~~l~sgs~D------~~I~iWd~~~~~~~~  136 (342)
                      +++-.++.|.++|+.+..     ...++      ... ..-..+...|++ .++++..+      +.|.+.|.++.....
T Consensus       100 v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~  178 (462)
T 2ece_A          100 VPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLG  178 (462)
T ss_dssp             EEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEE
T ss_pred             EccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEE
Confidence            356678889999986542     11221      111 133456778988 77776655      789999987543211


Q ss_pred             eeeeeecC-CCCcEEEEeccCCeEEEEE-------------------cCCeEEEEeCCCCCCcccccccc-cceeeEEEE
Q 019384          137 RTLVGTYP-QPERVYSLSLVGNRLVVAT-------------------AGRHVNVYDLRNMSQPEQRRESS-LKYQTRCVR  195 (342)
Q Consensus       137 ~~~~~~~~-~~~~v~~~s~~~~~~~~~s-------------------~d~~v~iwd~~~~~~~~~~~~~~-~~~~~~~v~  195 (342)
                      ........ ....-+.++++.+.+++..                   .+.+|.+||+.+.+. ....... .......+.
T Consensus       179 ~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~-~~tI~vg~~g~~P~~i~  257 (462)
T 2ece_A          179 KWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR-IHSLTLGEENRMALELR  257 (462)
T ss_dssp             ECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE-EEEEESCTTEEEEEEEE
T ss_pred             EEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE-eeEEecCCCCCccceeE
Confidence            11111100 0011134566677666553                   368999999987522 2221111 111233344


Q ss_pred             --EeeCCceEEEEc------cCCeEEEEEeechhhhhcccceeeeEEecCCCC--------ceeeeeeEEEEcCCCCeEE
Q 019384          196 --CYPNGTGYALSS------VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGR--------DIVYPVNAIAFHPIYGTFA  259 (342)
Q Consensus       196 --~~~~~~~~~~~s------~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~--------~~~~~v~~v~~sp~~~~l~  259 (342)
                        ++|+++...+++      .++++.++.||.......+...+....- ....        ........|.+||||++|.
T Consensus       258 f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v-~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLY  336 (462)
T 2ece_A          258 PLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPL-EGNLPEILKPFKAVPPLVTDIDISLDDKFLY  336 (462)
T ss_dssp             ECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEEC-CSSCCGGGGGGTEECCCCCCEEECTTSCEEE
T ss_pred             eeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccc-cccccccccccccCCCceeEEEECCCCCEEE
Confidence              489998776665      4555555444421100001111111100 0000        0012367799999999875


Q ss_pred             E-ecCCCeEEEEeCCC---ceeeeccCCC--------------CcceEEEEECCCCCEEEEEEe
Q 019384          260 T-GGCDGFVNVWDGNN---KKRLYQYSKY--------------PTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       260 s-gs~Dg~I~iWd~~~---~~~~~~~~~~--------------~~~V~~v~~spdg~~las~s~  305 (342)
                      . .-..+.|.+||+.+   .+.+..+.-.              ...-..+++||||++|.++.+
T Consensus       337 VSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNs  400 (462)
T 2ece_A          337 LSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNS  400 (462)
T ss_dssp             EEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECC
T ss_pred             EEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcC
Confidence            4 45578999999853   3444333211              012478999999999998874

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.61  E-value=1.8e-07  Score=88.21  Aligned_cols=260  Identities=10%  Similarity=0.028  Sum_probs=138.2

Q ss_pred             CCCeEEEE-eCCCcEEEEECCCceeee--eeecCCceEEEEE-e-CCCCeE-EEe------------------cCCcEEE
Q 019384           30 HSDHLLVS-SWDKSVRLYDASANVLRG--EFMHGGPVLDCCF-H-DDSSGF-SAS------------------ADHTVRR   85 (342)
Q Consensus        30 ~~~~l~s~-s~Dgti~vwd~~~~~~~~--~~~h~~~V~~~~~-~-~~~~~~-s~s------------------~D~~i~~   85 (342)
                      ||++|... ..+++|.+.|+.+.++..  .+-....+..+++ . |++..+ .++                  .++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            77777655 456789999999887555  3333456778887 3 666554 442                  2335666


Q ss_pred             EEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCc-EEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc
Q 019384           86 LVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKS-LKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA  164 (342)
Q Consensus        86 w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~-I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~  164 (342)
                      .|.++.+......-...-..++++|+++++++.+.+.. ....+..+. .. ...+..... .+...+..+++....   
T Consensus       180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~-~~-~d~v~V~~~-~~~~~~v~~Gk~~~i---  253 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTA-AE-MDHIVVFNI-AEIEKAIAAGDYQEL---  253 (595)
T ss_dssp             EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTC-CS-EEEEEEEEH-HHHHHHHHHTCSEEE---
T ss_pred             EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccc-cc-cceEEEeec-cceeEeccCCCeeEE---
Confidence            77766542211000012345778999998887776531 100010000 00 000000000 000001122333222   


Q ss_pred             CCeEEEEeCCC--CCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhc----c--cceeeeEEec
Q 019384          165 GRHVNVYDLRN--MSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQA----K--KYAFKCHRKS  236 (342)
Q Consensus       165 d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~----~--~~~~~~h~~~  236 (342)
                       +.|.+.|.++  .+.. . ...+......++.++|||++++++..... .+.++|+......    .  ......  ..
T Consensus       254 -~~V~VID~~~~~~~~~-~-~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~-~VsVid~~~~~~~~~~~l~~~~~v~~--~v  327 (595)
T 1fwx_A          254 -NGVKVVDGRKEASSLF-T-RYIPIANNPHGCNMAPDKKHLCVAGKLSP-TVTVLDVTRFDAVFYENADPRSAVVA--EP  327 (595)
T ss_dssp             -TTEEEEECSGGGCCSS-E-EEEEEESSCCCEEECTTSSEEEEECTTSS-BEEEEEGGGHHHHHHSCCCGGGGEEE--CC
T ss_pred             -CcEEEEeCcccCCcee-E-EEEecCCCceEEEEcCCCCEEEEeCCCCC-eEEEEECcccccccccccCcccceEE--Ec
Confidence             4599999987  3210 0 11122234567889999998877664332 3456888643210    0  000111  11


Q ss_pred             CCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC----------ceeeeccCCCCc-----ceEEEEECCCCCEEE
Q 019384          237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN----------KKRLYQYSKYPT-----SIAALSFSRDGRLLA  301 (342)
Q Consensus       237 ~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~----------~~~~~~~~~~~~-----~V~~v~~spdg~~la  301 (342)
                      ..+.    ...-++|+|+|..+++.-.|++|.+||+++          ...+.++.-|-.     .-.+++++|||++|.
T Consensus       328 ~vG~----gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~  403 (595)
T 1fwx_A          328 ELGL----GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV  403 (595)
T ss_dssp             BCCS----CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred             CCCC----CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEE
Confidence            1111    245689999995567778899999999876          334444443322     223446799999999


Q ss_pred             EEEe
Q 019384          302 VASS  305 (342)
Q Consensus       302 s~s~  305 (342)
                      +...
T Consensus       404 ~~Nk  407 (595)
T 1fwx_A          404 CLSK  407 (595)
T ss_dssp             EEES
T ss_pred             EcCC
Confidence            8875

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.61  E-value=2.4e-05  Score=74.97  Aligned_cols=54  Identities=13%  Similarity=0.240  Sum_probs=39.7

Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeccCCCC-cceEEEEECCCCC-EEEEEEecc
Q 019384          254 IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYP-TSIAALSFSRDGR-LLAVASSYT  307 (342)
Q Consensus       254 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~-~~V~~v~~spdg~-~las~s~~~  307 (342)
                      .+..++.++.||.++.||.++++.+.+++... ....-+.|..||+ |+++.+.++
T Consensus       483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G~g  538 (599)
T 1w6s_A          483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVG  538 (599)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred             cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEccCC
Confidence            46778889999999999999999887664322 2234567778988 677766653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.57  E-value=5.7e-06  Score=80.75  Aligned_cols=268  Identities=13%  Similarity=0.056  Sum_probs=146.3

Q ss_pred             CCeEEEEeCCCcEEEEECCCceeeeeeecCCc-----------e-EEEEEeCCCCeEEEecCCcEEEEEeccCceee-cc
Q 019384           31 SDHLLVSSWDKSVRLYDASANVLRGEFMHGGP-----------V-LDCCFHDDSSGFSASADHTVRRLVFSHGKEDI-LG   97 (342)
Q Consensus        31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~-----------V-~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~-~~   97 (342)
                      +..|..++.++.|.-+|..+++.+..+.....           + ..+.+ .++.++.++.|+.+..+|..+++..- +.
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~  155 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-WKGKVYVGAWDGRLIALDAATGKEVWHQN  155 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE-ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence            45677788899999999999886655432211           1 12223 45677888999999999998887431 11


Q ss_pred             cC-C----cceeEEEEeCCCCEEEEeeC------CCcEEEEcCCCCCCcceeeeeecCC---------------------
Q 019384           98 KH-D----APVRCIEYSYAAGQVITGSW------DKSLKCWDPRGASGQERTLVGTYPQ---------------------  145 (342)
Q Consensus        98 ~h-~----~~V~~~~~~~~~~~l~sgs~------D~~I~iWd~~~~~~~~~~~~~~~~~---------------------  145 (342)
                      .+ .    ..+.+--.. .++.++.++.      ++.|..+|.+++...  ........                     
T Consensus       156 ~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~--W~~~~~~~~~~~~~~~~~~~~g~~~w~~~  232 (677)
T 1kb0_A          156 TFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERK--WRWFSVPGDPSKPFEDESMKRAARTWDPS  232 (677)
T ss_dssp             TTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEE--EEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             CCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEE--EEeccCCCCcccccccccccccccccccc
Confidence            11 0    112211111 2345555543      789999998765431  11111000                     


Q ss_pred             -----------CCcEEEEeccCCeEEEEEcCC-------------------eEEEEeCCCCCCccccccccc-------c
Q 019384          146 -----------PERVYSLSLVGNRLVVATAGR-------------------HVNVYDLRNMSQPEQRRESSL-------K  188 (342)
Q Consensus       146 -----------~~~v~~~s~~~~~~~~~s~d~-------------------~v~iwd~~~~~~~~~~~~~~~-------~  188 (342)
                                 ......++...+.+++++.++                   .|..+|.++++..-.......       .
T Consensus       233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~  312 (677)
T 1kb0_A          233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST  312 (677)
T ss_dssp             GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence                       001234555566777776553                   488899988764322211111       1


Q ss_pred             eeeEEEEEeeCC---ceEEEEccCCeEEEEEeechhhhhcccceeee---EEec-CCCCce-------------------
Q 019384          189 YQTRCVRCYPNG---TGYALSSVEGRVAMEFFDLSEASQAKKYAFKC---HRKS-EAGRDI-------------------  242 (342)
Q Consensus       189 ~~~~~v~~~~~~---~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~---h~~~-~~~~~~-------------------  242 (342)
                      .....+....+|   ..++.++.++.+  +++|..+.+......+..   .... ..+...                   
T Consensus       313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l--~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~  390 (677)
T 1kb0_A          313 QPMILADIKIAGKPRKVILHAPKNGFF--FVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY  390 (677)
T ss_dssp             SCCEEEEEEETTEEEEEEEECCTTSEE--EEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred             CCcEEEecccCCcEeeEEEEECCCCEE--EEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcc
Confidence            112222233455   456677777754  557765443221111000   0000 000000                   


Q ss_pred             -eeeeeEEEEcCCCCeEEEecC-------------------------------------------CCeEEEEeCCCceee
Q 019384          243 -VYPVNAIAFHPIYGTFATGGC-------------------------------------------DGFVNVWDGNNKKRL  278 (342)
Q Consensus       243 -~~~v~~v~~sp~~~~l~sgs~-------------------------------------------Dg~I~iWd~~~~~~~  278 (342)
                       ...-..++|+|++.++++...                                           .|+|..||..+++.+
T Consensus       391 G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~  470 (677)
T 1kb0_A          391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA  470 (677)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred             cccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE
Confidence             000125789998887766432                                           278999999999988


Q ss_pred             eccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          279 YQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       279 ~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                      .++. +..++++..++.++.++..++.
T Consensus       471 W~~~-~~~~~~~g~~~~~g~~v~~g~~  496 (677)
T 1kb0_A          471 WSVE-HVSPWNGGTLTTAGNVVFQGTA  496 (677)
T ss_dssp             EEEE-ESSSCCCCEEEETTTEEEEECT
T ss_pred             eecC-CCCCCcCcceEeCCCEEEEECC
Confidence            7664 3344566667788887777754

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.55  E-value=1.7e-05  Score=75.87  Aligned_cols=260  Identities=12%  Similarity=0.074  Sum_probs=137.8

Q ss_pred             CCeEEEEeCCCcEEEEECCCceeeeeeecCC-----ceEEEEEeCCCCeEEEec------CCcEEEEEeccCceee---c
Q 019384           31 SDHLLVSSWDKSVRLYDASANVLRGEFMHGG-----PVLDCCFHDDSSGFSASA------DHTVRRLVFSHGKEDI---L   96 (342)
Q Consensus        31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~-----~V~~~~~~~~~~~~s~s~------D~~i~~w~~~~~~~~~---~   96 (342)
                      +.+|+.++.|+.+..+|..+++.+......+     .+.+.-...++.++.++.      ++.+..+|..+++..-   .
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            4577788899999999999887655432221     222111112556666654      7889888888876421   1


Q ss_pred             ccCC-----------------------------------cce-eEEEEeCCCCEEEEeeC------------C----CcE
Q 019384           97 GKHD-----------------------------------APV-RCIEYSYAAGQVITGSW------------D----KSL  124 (342)
Q Consensus        97 ~~h~-----------------------------------~~V-~~~~~~~~~~~l~sgs~------------D----~~I  124 (342)
                      ....                                   ..+ ..+++.++...++.++.            |    +.|
T Consensus       195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v  274 (571)
T 2ad6_A          195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence            1000                                   001 23566676667765553            2    358


Q ss_pred             EEEcCCCCCCcceeeeeecC-------C-CCcE-EEEeccCC---eEEEEEcCCeEEEEeCCCCCCcccccccc-cc---
Q 019384          125 KCWDPRGASGQERTLVGTYP-------Q-PERV-YSLSLVGN---RLVVATAGRHVNVYDLRNMSQPEQRRESS-LK---  188 (342)
Q Consensus       125 ~iWd~~~~~~~~~~~~~~~~-------~-~~~v-~~~s~~~~---~~~~~s~d~~v~iwd~~~~~~~~~~~~~~-~~---  188 (342)
                      ..+|.+++..  ....+...       . ...+ .....+++   .++.++.++.+..+|..+++......... ..   
T Consensus       275 ~Ald~~tG~~--~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~  352 (571)
T 2ad6_A          275 WGRDLDTGMA--KWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEETTTCCE--EEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEecCCCcE--EEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence            8899876542  22221111       0 1112 22223443   35667778899999998875432111000 00   


Q ss_pred             -------ee---------------e-----------EEEEEeeCCceEEEEccC--------------------------
Q 019384          189 -------YQ---------------T-----------RCVRCYPNGTGYALSSVE--------------------------  209 (342)
Q Consensus       189 -------~~---------------~-----------~~v~~~~~~~~~~~~s~~--------------------------  209 (342)
                             ..               .           ..++++|++..+++.+.+                          
T Consensus       353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  432 (571)
T 2ad6_A          353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY  432 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence                   00               0           123566666665554321                          


Q ss_pred             ---------CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeec
Q 019384          210 ---------GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQ  280 (342)
Q Consensus       210 ---------~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~  280 (342)
                               ..-.+..+|..+.+  ..|.....          .++....+...+..++.++.||.|+.||.++++.+.+
T Consensus       433 ~~~~~~~~~~~g~l~a~D~~tG~--~~W~~~~~----------~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~  500 (571)
T 2ad6_A          433 PGPNGPTKKEMGQIRAFDLTTGK--AKWTKWEK----------FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN  500 (571)
T ss_dssp             ECTTSTTSCCCEEEEEECTTTCC--EEEEEEES----------SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cCccccCCCCCCeEEEEECCCCC--EEEEecCC----------CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence                     12344556664332  22222110          0122222233467777899999999999999998876


Q ss_pred             cCCCC-cceEEEEECCCCCEEEEEE
Q 019384          281 YSKYP-TSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       281 ~~~~~-~~V~~v~~spdg~~las~s  304 (342)
                      +.... ..-..+.|..||+.++...
T Consensus       501 ~~~~~~~~~~p~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          501 FKMPSGGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             EECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EeCCCCcEeeeEEEEECCEEEEEEE
Confidence            65321 1223455778998554433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.51  E-value=1.5e-05  Score=72.89  Aligned_cols=184  Identities=9%  Similarity=0.090  Sum_probs=110.5

Q ss_pred             EEEcCCCCeEEEEeCCC--cEEEEECCCceeeeee----e-cCCceEEEEEeC-CCCeEEEecCCcEEEEEeccCceeec
Q 019384           25 LRFSNHSDHLLVSSWDK--SVRLYDASANVLRGEF----M-HGGPVLDCCFHD-DSSGFSASADHTVRRLVFSHGKEDIL   96 (342)
Q Consensus        25 l~fs~~~~~l~s~s~Dg--ti~vwd~~~~~~~~~~----~-h~~~V~~~~~~~-~~~~~s~s~D~~i~~w~~~~~~~~~~   96 (342)
                      ++|+++++.|+.+..++  .|.+|+...+......    . ....+.++++.+ ++.++.+..++.|..|+..++....+
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence            89999999999888876  7888887654332222    2 345678899987 67777777778899999887664433


Q ss_pred             -----ccCCcce--eEEEEeCC-CCEEEEeeCCCcEEEEcCCCCCCcceeeeeec------------CCCCcE--EEEec
Q 019384           97 -----GKHDAPV--RCIEYSYA-AGQVITGSWDKSLKCWDPRGASGQERTLVGTY------------PQPERV--YSLSL  154 (342)
Q Consensus        97 -----~~h~~~V--~~~~~~~~-~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~------------~~~~~v--~~~s~  154 (342)
                           .++...-  ..++|+|+ +.++++-...+.|+.||....   ........            ..-...  ++++.
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~  332 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE  332 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC
Confidence                 1222222  38999995 455566677889999997532   11111111            000112  34444


Q ss_pred             cCCeEEEEE-cCCeEEEEeCCCCCCccccccc-------------ccceeeEEEEEeeCCceEEEEccCCeE
Q 019384          155 VGNRLVVAT-AGRHVNVYDLRNMSQPEQRRES-------------SLKYQTRCVRCYPNGTGYALSSVEGRV  212 (342)
Q Consensus       155 ~~~~~~~~s-~d~~v~iwd~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~~s~~~~~  212 (342)
                      +++.+++-+ .++.|+.||+.++... .....             ..-.....+++.+++..+++...++.+
T Consensus       333 dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~I  403 (409)
T 3hrp_A          333 DGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAI  403 (409)
T ss_dssp             TCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEE
T ss_pred             CCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeE
Confidence            566555555 6789999997654211 00000             000235678888886555554444443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.46  E-value=6.7e-05  Score=66.01  Aligned_cols=240  Identities=12%  Similarity=0.008  Sum_probs=133.9

Q ss_pred             CeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee--------------------cCCceEEEEEeC-CCCeEEEec
Q 019384           21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM--------------------HGGPVLDCCFHD-DSSGFSASA   79 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~--------------------h~~~V~~~~~~~-~~~~~s~s~   79 (342)
                      ....++|+++++++.++..++.|..||..++.+.....                    ..+.+.++++.+ ++.++.+..
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~   99 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC   99 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence            45678899999888888899999999987654432211                    113478889985 777877766


Q ss_pred             CCcEEEEEeccCceeeccc-----CCcceeEEEEeC-CCCEEEEeeC-----------------CCcEEEEcCCCCCCcc
Q 019384           80 DHTVRRLVFSHGKEDILGK-----HDAPVRCIEYSY-AAGQVITGSW-----------------DKSLKCWDPRGASGQE  136 (342)
Q Consensus        80 D~~i~~w~~~~~~~~~~~~-----h~~~V~~~~~~~-~~~~l~sgs~-----------------D~~I~iWd~~~~~~~~  136 (342)
                      .+.+..++..++....+..     .......+++.+ ++...++-..                 ++.|..||..+...  
T Consensus       100 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~--  177 (322)
T 2fp8_A          100 YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET--  177 (322)
T ss_dssp             TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE--
T ss_pred             CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE--
Confidence            6667777765443322211     113467899999 8876665432                 36788888653321  


Q ss_pred             eeeeeecCCCCcEEEEeccCCeEEEE-EcCCeEEEEeCCCCCCcc-cccccccceeeEEEEEeeCCceEEEEcc------
Q 019384          137 RTLVGTYPQPERVYSLSLVGNRLVVA-TAGRHVNVYDLRNMSQPE-QRRESSLKYQTRCVRCYPNGTGYALSSV------  208 (342)
Q Consensus       137 ~~~~~~~~~~~~v~~~s~~~~~~~~~-s~d~~v~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~s~------  208 (342)
                      .........+. -+.++.+++.++.+ +..+.|..||+....... .... .... ...+++.++|..+++...      
T Consensus       178 ~~~~~~~~~p~-gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~~~g-P~gi~~d~~G~l~va~~~~~~~~~  254 (322)
T 2fp8_A          178 TLLLKELHVPG-GAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIPN-PGNIKRNADGHFWVSSSEELDGNM  254 (322)
T ss_dssp             EEEEEEESCCC-EEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-ECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred             EEeccCCccCc-ceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-eCCC-CCCeEECCCCCEEEEecCcccccc
Confidence            11122222222 23566666656555 556889999987532111 1111 1122 566778888875444333      


Q ss_pred             --CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC
Q 019384          209 --EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       209 --~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~  274 (342)
                        .....+..+|.. ......+..      ..+.. ...+.++++ .++..+++....+.|.+++...
T Consensus       255 ~~~~~~~v~~~d~~-G~~~~~~~~------~~g~~-~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          255 HGRVDPKGIKFDEF-GNILEVIPL------PPPFA-GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             TSCEEEEEEEECTT-SCEEEEEEC------CTTTT-TSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             cCCCccEEEEECCC-CCEEEEEEC------CCCCc-cccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence              112344556642 111111110      01100 113555666 3566666666788899988764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.45  E-value=0.0005  Score=58.51  Aligned_cols=245  Identities=11%  Similarity=0.072  Sum_probs=135.8

Q ss_pred             CeEEEEeCCCcEEEEECCCceee-----eee-ecCCceEEEEEeC-CCCeEE-EecCCcEEEEEeccCceeec-ccCCcc
Q 019384           32 DHLLVSSWDKSVRLYDASANVLR-----GEF-MHGGPVLDCCFHD-DSSGFS-ASADHTVRRLVFSHGKEDIL-GKHDAP  102 (342)
Q Consensus        32 ~~l~s~s~Dgti~vwd~~~~~~~-----~~~-~h~~~V~~~~~~~-~~~~~s-~s~D~~i~~w~~~~~~~~~~-~~h~~~  102 (342)
                      ++|+-+.. +.|+.+++.+....     ... .....+.+++|.+ ++.++. -...+.|..++........+ ......
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            34444443 47888888754321     111 1234567889986 455654 44567888888876543322 222246


Q ss_pred             eeEEEEeCCCCEEE-EeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEE--EEeccCCeEEEEEc---CCeEEEEeCCCC
Q 019384          103 VRCIEYSYAAGQVI-TGSWDKSLKCWDPRGASGQERTLVGTYPQPERVY--SLSLVGNRLVVATA---GRHVNVYDLRNM  176 (342)
Q Consensus       103 V~~~~~~~~~~~l~-sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~--~~s~~~~~~~~~s~---d~~v~iwd~~~~  176 (342)
                      ...+++.++++.|+ +-...+.|.++|+.....   ..+.... .....  .++..+..+..+..   .+.|..+++...
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~---~~~~~~~-~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~  156 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---RVLFDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT  156 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE---EEEEECC-CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC
Confidence            78999999766554 555667899999863221   1121111 12223  34443455555543   357888887543


Q ss_pred             CCcccccccccceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCC
Q 019384          177 SQPEQRRESSLKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY  255 (342)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~  255 (342)
                      ... ......+ .....+++.+++..+.++. ..+.  |..+|...... .. .+.       +..  . ...++.. .+
T Consensus       157 ~~~-~~~~~~~-~~P~gia~d~~~~~lyv~d~~~~~--I~~~~~~g~~~-~~-~~~-------~~~--~-P~gi~~d-~~  219 (267)
T 1npe_A          157 NRR-ILAQDNL-GLPNGLTFDAFSSQLCWVDAGTHR--AECLNPAQPGR-RK-VLE-------GLQ--Y-PFAVTSY-GK  219 (267)
T ss_dssp             CCE-EEECTTC-SCEEEEEEETTTTEEEEEETTTTE--EEEEETTEEEE-EE-EEE-------CCC--S-EEEEEEE-TT
T ss_pred             CcE-EEEECCC-CCCcEEEEcCCCCEEEEEECCCCE--EEEEecCCCce-EE-Eec-------CCC--C-ceEEEEe-CC
Confidence            211 1111111 2467788999876665554 4444  45577643211 11 111       001  1 2345554 34


Q ss_pred             CeEEEecCCCeEEEEeCCCceeeeccCCC-CcceEEEEECCCCC
Q 019384          256 GTFATGGCDGFVNVWDGNNKKRLYQYSKY-PTSIAALSFSRDGR  298 (342)
Q Consensus       256 ~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-~~~V~~v~~spdg~  298 (342)
                      ..+++....+.|.++|..+++.+..+... ....+.+++.||+.
T Consensus       220 ~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          220 NLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            45566666789999999988877766532 22468899999876

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.45  E-value=0.0002  Score=62.46  Aligned_cols=230  Identities=13%  Similarity=0.034  Sum_probs=123.1

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecC--C-cEEEEEeccCceeec
Q 019384           20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASAD--H-TVRRLVFSHGKEDIL   96 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D--~-~i~~w~~~~~~~~~~   96 (342)
                      .....++|+++++++++-..++.|..||..+.. .......+.+.++++.+++.++.+...  + .+..++..+++...+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~  110 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  110 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence            567899999999987777788999999987643 333334567888999888877766533  2 255556556554322


Q ss_pred             cc--CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeee-----e-cCCCCcEEEEeccCCeEEEE-EcCCe
Q 019384           97 GK--HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVG-----T-YPQPERVYSLSLVGNRLVVA-TAGRH  167 (342)
Q Consensus        97 ~~--h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~-----~-~~~~~~v~~~s~~~~~~~~~-s~d~~  167 (342)
                      ..  .......++..+++..+++-+.++.|..+|..+..........     . .........++.+++.++.+ +..+.
T Consensus       111 ~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~  190 (306)
T 2p4o_A          111 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML  190 (306)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTE
T ss_pred             EeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCE
Confidence            21  1122234444444433444445777877886432110000000     0 00001112233333333222 22334


Q ss_pred             EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384          168 VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN  247 (342)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  247 (342)
                      |..||+...                                             . .........  ..       ....
T Consensus       191 I~~~~~~~~---------------------------------------------g-~~~~~~~~~--~~-------~~P~  215 (306)
T 2p4o_A          191 LLRIPVDST---------------------------------------------D-KPGEPEIFV--EQ-------TNID  215 (306)
T ss_dssp             EEEEEBCTT---------------------------------------------S-CBCCCEEEE--ES-------CCCS
T ss_pred             EEEEEeCCC---------------------------------------------C-CCCccEEEe--cc-------CCCC
Confidence            444444320                                             0 000000000  00       0134


Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEeCCCcee--eeccCCCCcceEEEEEC---CCCCEEEEEEec
Q 019384          248 AIAFHPIYGTFATGGCDGFVNVWDGNNKKR--LYQYSKYPTSIAALSFS---RDGRLLAVASSY  306 (342)
Q Consensus       248 ~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~--~~~~~~~~~~V~~v~~s---pdg~~las~s~~  306 (342)
                      .+++.++|..+++....+.|.++|.. ++.  +..+........+++|.   ||+..|.+++..
T Consensus       216 gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          216 DFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             SEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            57889999877777777899999976 443  32333223568999999   898877666653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.41  E-value=0.00068  Score=67.31  Aligned_cols=270  Identities=10%  Similarity=0.033  Sum_probs=158.4

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee-------cCCceEEEEEeCCCCeEEEecCCcEEEEEecc
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-------HGGPVLDCCFHDDSSGFSASADHTVRRLVFSH   90 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~-------h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~   90 (342)
                      ..+.|+++..+++|.+- .|..++-|..|+...+.......       ....|.++....++.+..|+.++-+..|+..+
T Consensus       308 ~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~  386 (795)
T 4a2l_A          308 SQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPIT  386 (795)
T ss_dssp             SSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTT
T ss_pred             CCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCC
Confidence            35689999999988654 57777778888876544322111       23468888887778888888887888888776


Q ss_pred             Cceeecc---------cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeee-c--CCCCcEEEEeccC-C
Q 019384           91 GKEDILG---------KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGT-Y--PQPERVYSLSLVG-N  157 (342)
Q Consensus        91 ~~~~~~~---------~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~-~--~~~~~v~~~s~~~-~  157 (342)
                      +....+.         -....|.++...+++..|..|+.++.|.+||.+++..   ..+.. .  .....+.++..+. .
T Consensus       387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~---~~~~~~~~~l~~~~v~~i~~d~~g  463 (795)
T 4a2l_A          387 QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV---ENFNQRNSQLVNENVYAILPDGEG  463 (795)
T ss_dssp             CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE---EEECTTTSCCSCSCEEEEEECSSS
T ss_pred             CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE---EEeecCCCCcCCCeeEEEEECCCC
Confidence            5533221         1235789998887776466778888899999765321   11110 0  1123466666653 3


Q ss_pred             eEEEEEcCCeEEEEeCCCCCCcccccc---ccc-ceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeE
Q 019384          158 RLVVATAGRHVNVYDLRNMSQPEQRRE---SSL-KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH  233 (342)
Q Consensus       158 ~~~~~s~d~~v~iwd~~~~~~~~~~~~---~~~-~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h  233 (342)
                      .+.+++. +.+.+||..+.........   ..+ ...+.++...+++... +++.++   +..||......  .+  . +
T Consensus       464 ~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~G---l~~~~~~~~~~--~~--~-~  533 (795)
T 4a2l_A          464 NLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLW-IGGEEG---LSVFKQEGLDI--QK--A-S  533 (795)
T ss_dssp             CEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEE-EEESSC---EEEEEEETTEE--EE--C-C
T ss_pred             CEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEE-EEeCCc---eEEEeCCCCeE--EE--e-c
Confidence            5666776 4588899766422111000   011 1345666666666644 444444   34566533211  11  0 0


Q ss_pred             EecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeee--ccCCC-CcceEEEEECCCCCEEEEEE
Q 019384          234 RKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLY--QYSKY-PTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       234 ~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~--~~~~~-~~~V~~v~~spdg~~las~s  304 (342)
                      .....+ .....|.++...++|...++. .. -|..||.++++...  ...+. ...|.++...++|++.+++.
T Consensus       534 ~~~~~~-l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~  604 (795)
T 4a2l_A          534 ILPVSN-VTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTN  604 (795)
T ss_dssp             CSCSCG-GGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEET
T ss_pred             CCCCCC-CCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEcC
Confidence            000000 011247888888888754443 33 68889987664332  11222 34689999999999776553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.41  E-value=1.1e-05  Score=70.51  Aligned_cols=185  Identities=9%  Similarity=-0.027  Sum_probs=107.0

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeec-----CCceEEEEEeCCCCeEE-----Eec-------
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMH-----GGPVLDCCFHDDSSGFS-----ASA-------   79 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h-----~~~V~~~~~~~~~~~~s-----~s~-------   79 (342)
                      .+...+..++|+++|+++++...++.|.+||.. +.......+     ...+.++.+.+++.++.     +..       
T Consensus        83 ~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~  161 (305)
T 3dr2_A           83 DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCP  161 (305)
T ss_dssp             ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCC
T ss_pred             CCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccc
Confidence            345678999999999977766667899999986 443322211     13466788988887765     332       


Q ss_pred             ------CCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCC------CcEEEEcCCCCCCcceeeeeec-CCC
Q 019384           80 ------DHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWD------KSLKCWDPRGASGQERTLVGTY-PQP  146 (342)
Q Consensus        80 ------D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D------~~I~iWd~~~~~~~~~~~~~~~-~~~  146 (342)
                            .+.|..++..+++...+. .....+.++|+|+++.|+.+...      +.|.+||+..........+... ...
T Consensus       162 ~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~  240 (305)
T 3dr2_A          162 ADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGL  240 (305)
T ss_dssp             CCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSC
T ss_pred             cccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCC
Confidence                  134555555455533333 44556789999999877766554      6899999753220001111111 111


Q ss_pred             CcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC
Q 019384          147 ERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE  209 (342)
Q Consensus       147 ~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~  209 (342)
                      ..-+.++.+++ +.+++. +.|.+||... +.. ....  .+..+..+++.++++.+++++.+
T Consensus       241 pdgi~~d~~G~-lwv~~~-~gv~~~~~~g-~~~-~~~~--~~~~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          241 PDGFCVDRGGW-LWSSSG-TGVCVFDSDG-QLL-GHIP--TPGTASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             CCSEEECTTSC-EEECCS-SEEEEECTTS-CEE-EEEE--CSSCCCEEEECTTSCEEEEEETT
T ss_pred             CCeEEECCCCC-EEEecC-CcEEEECCCC-CEE-EEEE--CCCceeEEEEeCCCCEEEEEcCC
Confidence            11234555565 444554 4599999743 221 1111  11235566777887777766654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.39  E-value=4.7e-05  Score=64.50  Aligned_cols=193  Identities=11%  Similarity=0.095  Sum_probs=107.5

Q ss_pred             eeeeeecCCce--EEEEEeCCCCeE-EEecCC--cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEee-CCCcEEE
Q 019384           53 LRGEFMHGGPV--LDCCFHDDSSGF-SASADH--TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGS-WDKSLKC  126 (342)
Q Consensus        53 ~~~~~~h~~~V--~~~~~~~~~~~~-s~s~D~--~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs-~D~~I~i  126 (342)
                      +..++-|...-  ..+.|+ ++.++ +++.++  .|+.+|+.+++...-..-..........++++.|.... .++.+.+
T Consensus        33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v  111 (262)
T 3nol_A           33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFV  111 (262)
T ss_dssp             EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred             EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEE
Confidence            44555676543  678888 45665 666665  89999999887432111112232222233455665544 4788999


Q ss_pred             EcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEE
Q 019384          127 WDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS  206 (342)
Q Consensus       127 Wd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  206 (342)
                      +|.++...     +........-..++.+++.++....+++|.++|..+.+..            ..+.         ++
T Consensus       112 ~D~~t~~~-----~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~------------~~I~---------V~  165 (262)
T 3nol_A          112 WNIRNLRQ-----VRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPV------------RTIT---------VT  165 (262)
T ss_dssp             EETTTCCE-----EEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEE------------EEEE---------CE
T ss_pred             EECccCcE-----EEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEE------------EEEE---------ec
Confidence            99875432     1111111222346666776666655677888887764211            0000         00


Q ss_pred             ccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCC---
Q 019384          207 SVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSK---  283 (342)
Q Consensus       207 s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~---  283 (342)
                      . ++.             .                 ...++.+.|. +|..++....+..|.+.|.++++.+..+.-   
T Consensus       166 ~-~g~-------------~-----------------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L  213 (262)
T 3nol_A          166 A-HGE-------------E-----------------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGI  213 (262)
T ss_dssp             E-TTE-------------E-----------------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTG
T ss_pred             c-CCc-------------c-----------------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcC
Confidence            0 000             0                 0013345554 566556666678999999998877654321   


Q ss_pred             -------C--CcceEEEEECCCCCEEEEEE
Q 019384          284 -------Y--PTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       284 -------~--~~~V~~v~~spdg~~las~s  304 (342)
                             +  ....+.|||+|+++.|.+.+
T Consensus       214 ~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          214 LAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             GGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence                   1  12459999999988655554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.38  E-value=5.6e-05  Score=64.57  Aligned_cols=193  Identities=11%  Similarity=0.088  Sum_probs=113.6

Q ss_pred             eeeeeecCCc--eEEEEEeCCCCeEEEec---CCcEEEEEeccCcee-e--cccCCcceeEEEEeCCCCEEE-EeeCCCc
Q 019384           53 LRGEFMHGGP--VLDCCFHDDSSGFSASA---DHTVRRLVFSHGKED-I--LGKHDAPVRCIEYSYAAGQVI-TGSWDKS  123 (342)
Q Consensus        53 ~~~~~~h~~~--V~~~~~~~~~~~~s~s~---D~~i~~w~~~~~~~~-~--~~~h~~~V~~~~~~~~~~~l~-sgs~D~~  123 (342)
                      ...++.|...  ...+.|++++.++.++.   ++.|+..|..+++.. .  +..+ .....+++.  ++.|+ +.-.++.
T Consensus        11 vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~~~   87 (266)
T 2iwa_A           11 VLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLL--NEKLYQVVWLKNI   87 (266)
T ss_dssp             EEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEEEEETTCSE
T ss_pred             EEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEe--CCEEEEEEecCCE
Confidence            4455566654  57899987677765543   578999999988743 2  2222 122345554  45554 4455689


Q ss_pred             EEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceE
Q 019384          124 LKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGY  203 (342)
Q Consensus       124 I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  203 (342)
                      +.++|..+....  ..+.. . ...-..++.+++.++++..+++|.++|..+.+..            ..+         
T Consensus        88 v~viD~~t~~v~--~~i~~-g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~------------~~I---------  142 (266)
T 2iwa_A           88 GFIYDRRTLSNI--KNFTH-Q-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLI------------KKH---------  142 (266)
T ss_dssp             EEEEETTTTEEE--EEEEC-C-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEE------------EEE---------
T ss_pred             EEEEECCCCcEE--EEEEC-C-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEE------------EEE---------
Confidence            999998753321  11211 1 1222457777777776666778888888664211            000         


Q ss_pred             EEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCC
Q 019384          204 ALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSK  283 (342)
Q Consensus       204 ~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~  283 (342)
                      .++.. +.             .                 ...++.+.|. ++..++....++.|.+.|..+++.+..+.-
T Consensus       143 ~Vg~~-~~-------------p-----------------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~  190 (266)
T 2iwa_A          143 NVKYN-GH-------------R-----------------VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILL  190 (266)
T ss_dssp             ECEET-TE-------------E-----------------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred             EECCC-Cc-------------c-----------------cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence            00000 00             0                 0014456666 666666666788999999999887665431


Q ss_pred             C-----------C--cceEEEEECCCCCEEEEEEe
Q 019384          284 Y-----------P--TSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       284 ~-----------~--~~V~~v~~spdg~~las~s~  305 (342)
                      .           .  ...+.++|+||++.|.++..
T Consensus       191 ~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk  225 (266)
T 2iwa_A          191 PNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK  225 (266)
T ss_dssp             HHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred             CCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence            1           1  24589999999986665553

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.37  E-value=4.3e-05  Score=67.97  Aligned_cols=189  Identities=12%  Similarity=-0.009  Sum_probs=112.0

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeC-----CCcEEEEECCCceeeeeee-------cCCceEEEEEeC-CCCeE-EEe---c
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSW-----DKSVRLYDASANVLRGEFM-------HGGPVLDCCFHD-DSSGF-SAS---A   79 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~-----Dgti~vwd~~~~~~~~~~~-------h~~~V~~~~~~~-~~~~~-s~s---~   79 (342)
                      .+...+..|+|+++++++++-..     ++.|.+||+.++++...+.       +...+..+++.+ ++.++ +-+   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            45678999999999877665544     5889999998877544332       123467889985 45554 444   5


Q ss_pred             CCcEEEEEeccCce-eecccCC-----------------------------cceeEEEEeCCCCEEEEeeCCC-cEEEEc
Q 019384           80 DHTVRRLVFSHGKE-DILGKHD-----------------------------APVRCIEYSYAAGQVITGSWDK-SLKCWD  128 (342)
Q Consensus        80 D~~i~~w~~~~~~~-~~~~~h~-----------------------------~~V~~~~~~~~~~~l~sgs~D~-~I~iWd  128 (342)
                      ++.|.+|++.+++. +.+.+|.                             ..+..++|+|+++.|+.+..++ .|..++
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            77899999876653 2232221                             2357899999999888877766 444443


Q ss_pred             CC---CCCCcce------eeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeC
Q 019384          129 PR---GASGQER------TLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN  199 (342)
Q Consensus       129 ~~---~~~~~~~------~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  199 (342)
                      ..   .......      ....... ...-++++.++..+++...++.|.+||..+++.. .......-.....+++.++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~-~~~~~~~~~~p~~va~~~~  301 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK-LLVTDEKLSWTDSFNFGSD  301 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE-EEEECGGGSCEEEEEECTT
T ss_pred             HHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEE-EEEECCceecCCeeEECCC
Confidence            21   1000000      0111111 1123456666777777777889999998443211 1111111123567777777


Q ss_pred             CceEEEEc
Q 019384          200 GTGYALSS  207 (342)
Q Consensus       200 ~~~~~~~s  207 (342)
                      +..+++.+
T Consensus       302 g~l~v~~~  309 (343)
T 2qe8_A          302 GYLYFDCN  309 (343)
T ss_dssp             SCEEEEEC
T ss_pred             CcEEEEeC
Confidence            76555544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.37  E-value=0.0014  Score=64.98  Aligned_cols=268  Identities=9%  Similarity=0.074  Sum_probs=158.4

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee--------cCCceEEEEEeCCCCeEEEecCCcEEEEEecc
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM--------HGGPVLDCCFHDDSSGFSASADHTVRRLVFSH   90 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~--------h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~   90 (342)
                      .+.|+++..+++|.+.+ |..+ -|.+||..++.+.....        ....|.++....++.+..|+.++-+..++..+
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~  339 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIR  339 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGG
T ss_pred             CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCc
Confidence            56799999999887665 4445 48889987765443221        23568888888888888888888888887665


Q ss_pred             Cceeecc-------cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeec------CCCCcEEEEeccC-
Q 019384           91 GKEDILG-------KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTY------PQPERVYSLSLVG-  156 (342)
Q Consensus        91 ~~~~~~~-------~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~------~~~~~v~~~s~~~-  156 (342)
                      .....+.       -....|.++...+++. |-.|+.++.|..||..+..-  .......      -....+.++..+. 
T Consensus       340 ~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~v~~i~~d~~  416 (795)
T 4a2l_A          340 NRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF--TSYTLQEDESARGIGSNNIKAVYVDEK  416 (795)
T ss_dssp             GSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE--EEECCC------CCSCSCEEEEEEETT
T ss_pred             ccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE--EEEecCCCCcccCCCCccEEEEEEcCC
Confidence            4422221       1235699998887665 55678888899999764321  1111000      0123466666643 


Q ss_pred             Ce-EEEEEcCCeEEEEeCCCCCCccccc-cccc-ceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeE
Q 019384          157 NR-LVVATAGRHVNVYDLRNMSQPEQRR-ESSL-KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH  233 (342)
Q Consensus       157 ~~-~~~~s~d~~v~iwd~~~~~~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h  233 (342)
                      .. +.+++.++.+.+||..++....... ...+ ...+.++...+++. +.+++.++   +..||...... ..+.   +
T Consensus       417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~~G---l~~~~~~~~~~-~~~~---~  488 (795)
T 4a2l_A          417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWLGTLSA---LVRFNPEQRSF-TTIE---K  488 (795)
T ss_dssp             TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEEEESSC---EEEEETTTTEE-EECC---B
T ss_pred             CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEEEecCc---eeEEeCCCCeE-EEcc---c
Confidence            34 8889988889999987653211110 0001 12456666666665 44454444   34577543211 1110   0


Q ss_pred             EecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC-------CCCcceEEEEECCCCCEEEEEE
Q 019384          234 RKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS-------KYPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       234 ~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~-------~~~~~V~~v~~spdg~~las~s  304 (342)
                      .... ..-....|.++...++|.+.+...  +-|.+||..+++.  .+.       .....|.++...++|++.+++.
T Consensus       489 ~~~~-~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~  561 (795)
T 4a2l_A          489 EKDG-TPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR  561 (795)
T ss_dssp             CTTC-CBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES
T ss_pred             cccc-cccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC
Confidence            0000 000112578888888877554443  5688898776554  221       1234789999999999665443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.36  E-value=4.3e-05  Score=74.70  Aligned_cols=101  Identities=10%  Similarity=0.070  Sum_probs=61.1

Q ss_pred             CCeEEEEeCCCcEEEEECCCceeeeeeecCCc-----------e-EEEEEeCCCCeEEEecCCcEEEEEeccCceee-c-
Q 019384           31 SDHLLVSSWDKSVRLYDASANVLRGEFMHGGP-----------V-LDCCFHDDSSGFSASADHTVRRLVFSHGKEDI-L-   96 (342)
Q Consensus        31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~-----------V-~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~-~-   96 (342)
                      +..|..++.++.|.-+|..+++.+..+.....           + ..+.+ .++.++.++.|+.+..+|..+++..- + 
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~v~v~~~dg~l~AlDa~TG~~~W~~~  148 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV-WKGKVYVGVLDGRLEAIDAKTGQRAWSVD  148 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE-ECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence            45777888899999999998876655432211           1 11222 35677888999999999998887431 1 


Q ss_pred             cc-CC---cceeEEEEeCCCCEEEEee------CCCcEEEEcCCCCC
Q 019384           97 GK-HD---APVRCIEYSYAAGQVITGS------WDKSLKCWDPRGAS  133 (342)
Q Consensus        97 ~~-h~---~~V~~~~~~~~~~~l~sgs------~D~~I~iWd~~~~~  133 (342)
                      .. +.   ..+.+.-...++ .++.++      .|+.|..||.+++.
T Consensus       149 ~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~  194 (689)
T 1yiq_A          149 TRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGK  194 (689)
T ss_dssp             CCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             CcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCc
Confidence            11 11   111111001134 454443      37899999988654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.35  E-value=3.4e-05  Score=65.35  Aligned_cols=185  Identities=8%  Similarity=-0.038  Sum_probs=107.4

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCC--cEEEEECCCceeeeeeecCCceEE--EEEeCCCCeEE-EecCCcEEEEEeccCce
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDK--SVRLYDASANVLRGEFMHGGPVLD--CCFHDDSSGFS-ASADHTVRRLVFSHGKE   93 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dg--ti~vwd~~~~~~~~~~~h~~~V~~--~~~~~~~~~~s-~s~D~~i~~w~~~~~~~   93 (342)
                      ......|.|+ ++.+..+++.+|  .|+++|+.+++......-......  +.+. +++++. .-.++.+.++|..+.+.
T Consensus        42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~~~  119 (262)
T 3nol_A           42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW-KDKIVGLTWKNGLGFVWNIRNLRQ  119 (262)
T ss_dssp             TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTCCE
T ss_pred             CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe-CCEEEEEEeeCCEEEEEECccCcE
Confidence            3455789998 677777888776  999999999887665544444433  4443 345554 44577899999888763


Q ss_pred             e-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCC-CcEEEEeccCCeEEEEE-cCCeEEE
Q 019384           94 D-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQP-ERVYSLSLVGNRLVVAT-AGRHVNV  170 (342)
Q Consensus        94 ~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~-~~v~~~s~~~~~~~~~s-~d~~v~i  170 (342)
                      . .+.- ..  ....++++++.|+.+..+++|.++|.++........+.....+ .....+.+.+..+.++. .+++|.+
T Consensus       120 ~~ti~~-~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~v  196 (262)
T 3nol_A          120 VRSFNY-DG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVR  196 (262)
T ss_dssp             EEEEEC-SS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEE
T ss_pred             EEEEEC-CC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEE
Confidence            2 2221 11  1122335677776666678899999876433221122111111 11223444333444444 5678999


Q ss_pred             EeCCCCCCccccccc----------ccceeeEEEEEeeCCceEEEEcc
Q 019384          171 YDLRNMSQPEQRRES----------SLKYQTRCVRCYPNGTGYALSSV  208 (342)
Q Consensus       171 wd~~~~~~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~s~  208 (342)
                      .|.++++........          ......+.+++.|+++.+++.+.
T Consensus       197 IDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          197 IDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             ECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            999887542211111          11124588999998776665543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.35  E-value=0.00014  Score=62.16  Aligned_cols=194  Identities=6%  Similarity=-0.094  Sum_probs=111.9

Q ss_pred             CCeEEEEEcCCCCeEEEEeC--CCcEEEEECCCceeeeeeecCCc--eEEEEEeCCCCeE-EEecCCcEEEEEeccCcee
Q 019384           20 DGISNLRFSNHSDHLLVSSW--DKSVRLYDASANVLRGEFMHGGP--VLDCCFHDDSSGF-SASADHTVRRLVFSHGKED   94 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~--Dgti~vwd~~~~~~~~~~~h~~~--V~~~~~~~~~~~~-s~s~D~~i~~w~~~~~~~~   94 (342)
                      .....+.|++++.+.++.+.  +++|+++|+.+++......-...  ...+++. +++++ +.-.++.+.++|..+.+..
T Consensus        21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEE
Confidence            34678999998765565553  68999999999887665432222  2345554 34555 4456788999998876632


Q ss_pred             -ecc-cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCC-cEEEEeccCCeEEEEE-cCCeEEE
Q 019384           95 -ILG-KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE-RVYSLSLVGNRLVVAT-AGRHVNV  170 (342)
Q Consensus        95 -~~~-~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~-~v~~~s~~~~~~~~~s-~d~~v~i  170 (342)
                       .+. + ...  ...+++|++.++.+..+++|.++|.++........+.....+. ....+.+.+..+.+.. .+++|.+
T Consensus       100 ~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~v  176 (266)
T 2iwa_A          100 KNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIAR  176 (266)
T ss_dssp             EEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEE
T ss_pred             EEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEE
Confidence             221 2 111  1234567877766667889999998764322111222111111 1233444334454444 5689999


Q ss_pred             EeCCCCCCccccccccc-----------ceeeEEEEEeeCCceEEEEc-cCCeEEEEEeec
Q 019384          171 YDLRNMSQPEQRRESSL-----------KYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDL  219 (342)
Q Consensus       171 wd~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~  219 (342)
                      .|..+++.........+           ....+.+++.|+++.++++. ...++  ...++
T Consensus       177 ID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v--~~i~l  235 (266)
T 2iwa_A          177 ISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL--FEIKL  235 (266)
T ss_dssp             EETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE--EEEEE
T ss_pred             EECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE--EEEEE
Confidence            99998754322111110           12457899999987665554 44543  33444

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.35  E-value=1.9e-05  Score=70.98  Aligned_cols=92  Identities=5%  Similarity=-0.147  Sum_probs=57.6

Q ss_pred             cEEEEEeccCcee-ecccCCcceeEEEEeCCCCEEEEee----------CCCcEEEEcCCCCCCcceeeee-ec----CC
Q 019384           82 TVRRLVFSHGKED-ILGKHDAPVRCIEYSYAAGQVITGS----------WDKSLKCWDPRGASGQERTLVG-TY----PQ  145 (342)
Q Consensus        82 ~i~~w~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~sgs----------~D~~I~iWd~~~~~~~~~~~~~-~~----~~  145 (342)
                      ++.+.|..+.+.. .+..-..+  .++++||+++++.+.          .+++|.+||+.+........+. ..    ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            6678888777632 33222234  699999999887765          3689999999865432111111 00    01


Q ss_pred             CCcEEEEeccCCeEEEEEc--CCeEEE--EeCCC
Q 019384          146 PERVYSLSLVGNRLVVATA--GRHVNV--YDLRN  175 (342)
Q Consensus       146 ~~~v~~~s~~~~~~~~~s~--d~~v~i--wd~~~  175 (342)
                      ...-+.++.+++.++++..  +..+.+  +|+.+
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            1224568888888887764  356888  88865

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.33  E-value=0.00011  Score=71.42  Aligned_cols=271  Identities=10%  Similarity=0.011  Sum_probs=137.9

Q ss_pred             EEEEcC-CCCeEEEEeCCC-----------cEEEEECCCceeeeee----ecCCceEEEEEeCCCCeE-EEe-cCCcEEE
Q 019384           24 NLRFSN-HSDHLLVSSWDK-----------SVRLYDASANVLRGEF----MHGGPVLDCCFHDDSSGF-SAS-ADHTVRR   85 (342)
Q Consensus        24 ~l~fs~-~~~~l~s~s~Dg-----------ti~vwd~~~~~~~~~~----~h~~~V~~~~~~~~~~~~-s~s-~D~~i~~   85 (342)
                      ++++.+ +++.++.|+.+.           .+.+||..++......    .+.....++++..+++++ .|+ .+..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            567777 888888888653           5889999876543221    122223346666666765 555 3457999


Q ss_pred             EEeccCceeecc-cCCcce-eEEEEeCCCCEEEEee-CC-----CcEEEEcCCCCCCcceeeee-----ecCCCCcEEEE
Q 019384           86 LVFSHGKEDILG-KHDAPV-RCIEYSYAAGQVITGS-WD-----KSLKCWDPRGASGQERTLVG-----TYPQPERVYSL  152 (342)
Q Consensus        86 w~~~~~~~~~~~-~h~~~V-~~~~~~~~~~~l~sgs-~D-----~~I~iWd~~~~~~~~~~~~~-----~~~~~~~v~~~  152 (342)
                      ||..+.....+. -+...- .+++..++++.++.|+ .+     ..+.+||+.+..=   ..+.     ..........+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W---~~~~~~~~~p~~~~~~~~~~  346 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW---TSLPNAKVNPMLTADKQGLY  346 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE---EEETTSCSGGGCCCCTTGGG
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc---eeCCCcccccccccccccee
Confidence            998877643321 111111 2445566888888888 45     5789999864320   1110     00000000001


Q ss_pred             eccCCeEEEEEcC---------CeEEEEeCCCCCCccccccccc-------ceeeEEEEEe-eCCceEEEEccCC-----
Q 019384          153 SLVGNRLVVATAG---------RHVNVYDLRNMSQPEQRRESSL-------KYQTRCVRCY-PNGTGYALSSVEG-----  210 (342)
Q Consensus       153 s~~~~~~~~~s~d---------~~v~iwd~~~~~~~~~~~~~~~-------~~~~~~v~~~-~~~~~~~~~s~~~-----  210 (342)
                      ..++..++.++.+         ..+..||..+..-.........       .....++.+. .+++.+++|+.+.     
T Consensus       347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~  426 (656)
T 1k3i_A          347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD  426 (656)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred             ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence            1223334444333         4577888876421100000000       0011223222 2566666766422     


Q ss_pred             ----eEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC-----------CeEEEEeCCCc
Q 019384          211 ----RVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD-----------GFVNVWDGNNK  275 (342)
Q Consensus       211 ----~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D-----------g~I~iWd~~~~  275 (342)
                          ...+.+||.....    |.........    ....-.+++..|++++++.|+.+           ..+.+||.++.
T Consensus       427 ~~~~~~~v~~yd~~~~~----W~~~~~~~mp----~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~  498 (656)
T 1k3i_A          427 ATTNAHIITLGEPGTSP----NTVFASNGLY----FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD  498 (656)
T ss_dssp             CCCCEEEEECCSTTSCC----EEEECTTCCS----SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred             cCCcceEEEcCCCCCCC----eeEEccCCCC----CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence                1135567764321    1110000000    00011244567899999999865           46899998765


Q ss_pred             ee--eeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          276 KR--LYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       276 ~~--~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                      +-  +..+........+..+.|||++|+.|+.
T Consensus       499 ~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          499 TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             ceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            42  2222222222334556799999999885

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.27  E-value=0.00031  Score=67.18  Aligned_cols=74  Identities=18%  Similarity=0.294  Sum_probs=49.5

Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeccCCCCc-ceEEEEECCCCC-EEEEEEeccc----cC------CCCCCCCCcEE
Q 019384          254 IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPT-SIAALSFSRDGR-LLAVASSYTF----EE------GDKPHEPDAIF  321 (342)
Q Consensus       254 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~-~V~~v~~spdg~-~las~s~~~~----~~------~~~~~~~~~~~  321 (342)
                      .+..++.|+.||.++.||.++++.+.+++.... ...-+.|..||+ |+++.+.++-    .-      .......+.++
T Consensus       496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G~gg~~~~~~~~~~~~~~~~~~g~~~~  575 (582)
T 1flg_A          496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLWGGDMADLTRPVAQGGSFW  575 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCTHHHHHHTTCCCCCEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEccCCCcccccccccccccccCCCCCEEE
Confidence            467788899999999999999999877654322 123477888998 7776666432    00      01233455788


Q ss_pred             EEEccC
Q 019384          322 VRSVNE  327 (342)
Q Consensus       322 ~~~~~~  327 (342)
                      +|.|.+
T Consensus       576 ~f~l~~  581 (582)
T 1flg_A          576 VFKLPS  581 (582)
T ss_dssp             EEECCC
T ss_pred             EEeCCC
Confidence            888743

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.24  E-value=2.1e-07  Score=84.07  Aligned_cols=149  Identities=11%  Similarity=0.016  Sum_probs=74.8

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecC--CceEE-EEEeCCCCeEEEecCCcEEEEEeccCcee-e
Q 019384           20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHG--GPVLD-CCFHDDSSGFSASADHTVRRLVFSHGKED-I   95 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~--~~V~~-~~~~~~~~~~s~s~D~~i~~w~~~~~~~~-~   95 (342)
                      +.+.+..+..++..+++++.||+|+.||..+++.+......  ..+.+ ..+..++.+++++.|+.+..||..+++.. .
T Consensus        38 ~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~  117 (369)
T 2hz6_A           38 DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQT  117 (369)
T ss_dssp             CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC-------
T ss_pred             CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence            44555556667778888899999999999877643322111  11111 11124566778888999999999888743 2


Q ss_pred             cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC-----CeEEEEEcCCeEEE
Q 019384           96 LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG-----NRLVVATAGRHVNV  170 (342)
Q Consensus        96 ~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~-----~~~~~~s~d~~v~i  170 (342)
                      +..+.    ...++|+++.+++++.|+.|..||.+++...........      ......+     +.+++++.++.+..
T Consensus       118 ~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~------~~~~~~~~~~~~~~v~~~~~dg~v~a  187 (369)
T 2hz6_A          118 LSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY------AASLPEDDVDYKMSHFVSNGDGLVVT  187 (369)
T ss_dssp             -------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE------CCBCCCCCTTCCCCEEEEETSCEEEE
T ss_pred             ecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc------cCccccCCccccceEEEECCCCEEEE
Confidence            22222    234456788899999999999999876543211111111      1122222     56788899999999


Q ss_pred             EeCCCCCC
Q 019384          171 YDLRNMSQ  178 (342)
Q Consensus       171 wd~~~~~~  178 (342)
                      ||.++++.
T Consensus       188 ~d~~tG~~  195 (369)
T 2hz6_A          188 VDSESGDV  195 (369)
T ss_dssp             ECTTTCCE
T ss_pred             EECCCCcE
Confidence            99988754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.24  E-value=6.4e-05  Score=63.73  Aligned_cols=183  Identities=9%  Similarity=0.009  Sum_probs=108.2

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEE--EEEeCCCCeE-EEecCCcEEEEEeccCcee-
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLD--CCFHDDSSGF-SASADHTVRRLVFSHGKED-   94 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~--~~~~~~~~~~-s~s~D~~i~~w~~~~~~~~-   94 (342)
                      ......|.|+ ++.+..+.+.+|.|+++|+.+++..... -......  +.+. +++++ ..-.++.+.++|..+.+.. 
T Consensus        54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD-GERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC-SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe-CCEEEEEEccCCEEEEEECCcCcEEE
Confidence            4556788888 4677788899999999999998766555 3344433  5554 34555 4456788999998887633 


Q ss_pred             ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCC-CcEEEEeccCCeEEEEE-cCCeEEEEe
Q 019384           95 ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQP-ERVYSLSLVGNRLVVAT-AGRHVNVYD  172 (342)
Q Consensus        95 ~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~-~~v~~~s~~~~~~~~~s-~d~~v~iwd  172 (342)
                      .+.- ...=+.++  ++++.|+.+..+++|.++|.++........+...... .....+.+....+..+. .+++|.+.|
T Consensus       131 ti~~-~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vID  207 (268)
T 3nok_A          131 TTRY-SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEID  207 (268)
T ss_dssp             EEEC-SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEEC
T ss_pred             EEeC-CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEe
Confidence            2221 11113343  4677777766788999999876433221122211111 12334444334454444 567899999


Q ss_pred             CCCCCCcccccc-----------cccceeeEEEEEeeCCceEEEEc
Q 019384          173 LRNMSQPEQRRE-----------SSLKYQTRCVRCYPNGTGYALSS  207 (342)
Q Consensus       173 ~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~s  207 (342)
                      .++++.......           .......+.+++.|+++.+++..
T Consensus       208 p~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            988754211110           01113468899998766555444

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.20  E-value=0.00015  Score=63.50  Aligned_cols=57  Identities=12%  Similarity=0.164  Sum_probs=38.0

Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          248 AIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       248 ~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      ++.+.++ ..|+.++.+|.|..+|. +++.+..+......+.++...++|++.+ ++..+
T Consensus       259 ~~~~~~~-g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G  315 (330)
T 3hxj_A          259 SPVIGNT-DTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNG  315 (330)
T ss_dssp             CCEECTT-SCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTS
T ss_pred             cceEcCC-CeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCC
Confidence            3444444 45778888889999996 5665555444445677888889998766 44433

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.18  E-value=0.0024  Score=63.30  Aligned_cols=268  Identities=12%  Similarity=0.117  Sum_probs=155.8

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee----------ecCCceEEEEEeCCCCeEEEecCCcEEEEE
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF----------MHGGPVLDCCFHDDSSGFSASADHTVRRLV   87 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~----------~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~   87 (342)
                      ..+.|+++..+++|. |..|..++-|..++..........          .....|.++....++.+..|+.++-+..++
T Consensus       311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~  389 (781)
T 3v9f_A          311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFE  389 (781)
T ss_dssp             SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEE
T ss_pred             CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEE
Confidence            457899999999886 555777777888888765433221          123568888887778888888777788888


Q ss_pred             eccCceeec----ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeee-cCCCCcEEEEeccC-CeEEE
Q 019384           88 FSHGKEDIL----GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGT-YPQPERVYSLSLVG-NRLVV  161 (342)
Q Consensus        88 ~~~~~~~~~----~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~-~~~~~~v~~~s~~~-~~~~~  161 (342)
                      ..++....+    ......|.++...+++. |..|+.++.|..+|.++..-   ..+.. ......+.++..+. ..+.+
T Consensus       390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~---~~~~~~~~~~~~v~~i~~d~~g~lwi  465 (781)
T 3v9f_A          390 NGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKF---QIIELEKNELLDVRVFYEDKNKKIWI  465 (781)
T ss_dssp             TTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEE---EECCSTTTCCCCEEEEEECTTSEEEE
T ss_pred             CCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcE---EEeccCCCCCCeEEEEEECCCCCEEE
Confidence            765443222    12346789998877665 55577777899998754211   11110 01224566676654 46777


Q ss_pred             EEcCCeEEEEeCCCCCCccccccc---ccceeeEEEEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEEecC
Q 019384          162 ATAGRHVNVYDLRNMSQPEQRRES---SLKYQTRCVRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHRKSE  237 (342)
Q Consensus       162 ~s~d~~v~iwd~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~~~~  237 (342)
                      ++. +.+..||..+..........   .....+.++...++|. +.+++. ++   +..+|..... ...+.      ..
T Consensus       466 gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~G---l~~~~~~~~~-~~~~~------~~  533 (781)
T 3v9f_A          466 GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGG---VGIYTPDMQL-VRKFN------QY  533 (781)
T ss_dssp             EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSC---EEEECTTCCE-EEEEC------TT
T ss_pred             EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-EEEEEcCCC---EEEEeCCCCe-EEEcc------CC
Confidence            777 56888998764321111000   0123456776666666 444554 44   2346653211 11110      00


Q ss_pred             CCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeee--ccCCC-CcceEEEEECCCCCEEEEEE
Q 019384          238 AGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLY--QYSKY-PTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       238 ~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~--~~~~~-~~~V~~v~~spdg~~las~s  304 (342)
                      .+. ....|.++...++|...++ +.+|-|..||.++++...  ...+- ...|.++...++|++.+++.
T Consensus       534 ~~l-~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~  601 (781)
T 3v9f_A          534 EGF-CSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTN  601 (781)
T ss_dssp             TTC-SCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECS
T ss_pred             CCC-CCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcC
Confidence            010 1124788888888775444 446665889987654321  11222 23688999999998766543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.18  E-value=0.00042  Score=68.47  Aligned_cols=195  Identities=11%  Similarity=0.036  Sum_probs=105.1

Q ss_pred             CeEEEEEc-CCCCeEEEE-eCC----CcEEEEECCCc-eeeeeeecCCceEEEEEeCCCC-eEEEecCC-----cEEEEE
Q 019384           21 GISNLRFS-NHSDHLLVS-SWD----KSVRLYDASAN-VLRGEFMHGGPVLDCCFHDDSS-GFSASADH-----TVRRLV   87 (342)
Q Consensus        21 ~V~~l~fs-~~~~~l~s~-s~D----gti~vwd~~~~-~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~-----~i~~w~   87 (342)
                      .+.+.+|| |||++||-+ +.+    .+|+++|+.++ +...... ......+.|+++++ ++....|.     .|.+++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~-~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV-SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE-EEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc-cCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            67889999 999988733 323    35999999887 5322100 11234678987765 44445442     466666


Q ss_pred             eccCc---eeecc-cCCcceeEEEEeCCCCEEEEeeC---CCcEEEEcCCCCCCcc--eeeeeecCCCCcEEEEe-ccCC
Q 019384           88 FSHGK---EDILG-KHDAPVRCIEYSYAAGQVITGSW---DKSLKCWDPRGASGQE--RTLVGTYPQPERVYSLS-LVGN  157 (342)
Q Consensus        88 ~~~~~---~~~~~-~h~~~V~~~~~~~~~~~l~sgs~---D~~I~iWd~~~~~~~~--~~~~~~~~~~~~v~~~s-~~~~  157 (342)
                      +.++.   ..++. .+......+.|+||++.|+..+.   ...|.++|+.++....  .......  .....+.. ..++
T Consensus       254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--~~~~~s~~~~~g~  331 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE--KGVRYDVQMHGTS  331 (751)
T ss_dssp             TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC--TTCCEEEEEETTT
T ss_pred             CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC--CCceEEEeeeeCC
Confidence            66653   12222 23345668899999998765443   2367888886542222  1221111  12223344 2366


Q ss_pred             eEEEEEcCC-----eEEEEeCCCCCCccc-ccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeec
Q 019384          158 RLVVATAGR-----HVNVYDLRNMSQPEQ-RRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDL  219 (342)
Q Consensus       158 ~~~~~s~d~-----~v~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~  219 (342)
                      .|+..+..+     .|..+|+.+...... .........+..+.+. .+..+++...++...+++++.
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            666555432     566677654211111 1111111223334333 233445556778878888885

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.17  E-value=0.00038  Score=58.35  Aligned_cols=184  Identities=9%  Similarity=-0.031  Sum_probs=107.8

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCC--CcEEEEECCCceeeeeeecCCceE--EEEEeCCCCeE-EEecCCcEEEEEeccCce
Q 019384           19 SDGISNLRFSNHSDHLLVSSWD--KSVRLYDASANVLRGEFMHGGPVL--DCCFHDDSSGF-SASADHTVRRLVFSHGKE   93 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~D--gti~vwd~~~~~~~~~~~h~~~V~--~~~~~~~~~~~-s~s~D~~i~~w~~~~~~~   93 (342)
                      ......|.|+. +.+..|.+.+  ..|+++|+.+++......-.....  ++.+. +++++ ..-.++.+.++|..+.+.
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~   97 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTP   97 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcE
Confidence            45677899996 5666777775  499999999998766654444443  34443 34554 445678899999887763


Q ss_pred             e-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCC-CcEEEEeccCCeEEEEE-cCCeEEE
Q 019384           94 D-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQP-ERVYSLSLVGNRLVVAT-AGRHVNV  170 (342)
Q Consensus        94 ~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~-~~v~~~s~~~~~~~~~s-~d~~v~i  170 (342)
                      . .+.- ...=+.++  ++++.|+.+..+++|.++|.++........+.....+ ..+..+.+.+..+.... .+..|.+
T Consensus        98 ~~ti~~-~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~v  174 (243)
T 3mbr_X           98 RARFRY-PGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIAR  174 (243)
T ss_dssp             EEEEEC-SSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEE
T ss_pred             EEEEeC-CCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEE
Confidence            2 2221 11113443  4676666666688999999876432222222211111 12334555444455444 5678999


Q ss_pred             EeCCCCCCccccccc-----------ccceeeEEEEEeeCCceEEEEc
Q 019384          171 YDLRNMSQPEQRRES-----------SLKYQTRCVRCYPNGTGYALSS  207 (342)
Q Consensus       171 wd~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~s  207 (342)
                      .|.++++........           ......+.+++.|+++.+.+.+
T Consensus       175 IDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          175 IDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             ECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            999887542111100           1123468899999877665554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.15  E-value=0.00023  Score=60.30  Aligned_cols=192  Identities=11%  Similarity=0.077  Sum_probs=109.5

Q ss_pred             eeeeeecCCc--eEEEEEeCCCCe-EEEecCCcEEEEEeccCcee-ecccCCccee--EEEEeCCCCEE-EEeeCCCcEE
Q 019384           53 LRGEFMHGGP--VLDCCFHDDSSG-FSASADHTVRRLVFSHGKED-ILGKHDAPVR--CIEYSYAAGQV-ITGSWDKSLK  125 (342)
Q Consensus        53 ~~~~~~h~~~--V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~~-~~~~h~~~V~--~~~~~~~~~~l-~sgs~D~~I~  125 (342)
                      +..++-|...  ...+.|.. +.+ ++.+.++.|+.+|+++++.. .+  -.....  .+++  +++.| ...-.++.+.
T Consensus        45 Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~--~g~~Ly~ltw~~~~v~  119 (268)
T 3nok_A           45 IIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLAS--DGERLYQLTWTEGLLF  119 (268)
T ss_dssp             EEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEE--CSSCEEEEESSSCEEE
T ss_pred             EEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEE--eCCEEEEEEccCCEEE
Confidence            4455556544  36788875 455 47788888999999988732 22  112222  2444  44444 4445678899


Q ss_pred             EEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEE
Q 019384          126 CWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYAL  205 (342)
Q Consensus       126 iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  205 (342)
                      ++|.++...     +........-..++.+++.++.+..+++|.++|..+.+..            ..+.         +
T Consensus       120 V~D~~Tl~~-----~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~------------~~I~---------V  173 (268)
T 3nok_A          120 TWSGMPPQR-----ERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALV------------GAVQ---------V  173 (268)
T ss_dssp             EEETTTTEE-----EEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEE------------EEEE---------C
T ss_pred             EEECCcCcE-----EEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEE------------EEEE---------e
Confidence            999875432     1221112222456677777777766788999988765211            0000         0


Q ss_pred             EccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCC--
Q 019384          206 SSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSK--  283 (342)
Q Consensus       206 ~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~--  283 (342)
                      .. ++.             .                 ...++.+.|. +|..++....+..|.+.|.++++.+..+.-  
T Consensus       174 ~~-~g~-------------~-----------------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~  221 (268)
T 3nok_A          174 KL-RGQ-------------P-----------------VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASA  221 (268)
T ss_dssp             EE-TTE-------------E-----------------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHH
T ss_pred             CC-CCc-------------c-----------------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCC
Confidence            00 000             0                 0013445554 566556666677999999998876654321  


Q ss_pred             ---------C--CcceEEEEECCCCC-EEEEEEecc
Q 019384          284 ---------Y--PTSIAALSFSRDGR-LLAVASSYT  307 (342)
Q Consensus       284 ---------~--~~~V~~v~~spdg~-~las~s~~~  307 (342)
                               +  ....+.|||+|+++ ++++|-.|.
T Consensus       222 L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp  257 (268)
T 3nok_A          222 LTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP  257 (268)
T ss_dssp             HHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS
T ss_pred             CcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC
Confidence                     1  13569999999866 555543343

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.10  E-value=2.8e-05  Score=68.18  Aligned_cols=245  Identities=10%  Similarity=0.058  Sum_probs=127.5

Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeee-cCCceEEEEEeCCCCeEEEecCCcEEEEEeccCcee-ecccCCc
Q 019384           24 NLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKED-ILGKHDA  101 (342)
Q Consensus        24 ~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~-h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~-~~~~h~~  101 (342)
                      +...+.++ .|..++.++.|..|| .+++...... ....+.++...+++.++.++.+  +..++. +++.. .+.....
T Consensus        24 ~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~   98 (330)
T 3hxj_A           24 SPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKA   98 (330)
T ss_dssp             CCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC---
T ss_pred             CceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCC
Confidence            45555555 455677899999999 7766544332 2233455555566666666555  767764 33321 1222222


Q ss_pred             ceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc-CCeEEEEEcCCeEEEEeCCCCCCcc
Q 019384          102 PVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV-GNRLVVATAGRHVNVYDLRNMSQPE  180 (342)
Q Consensus       102 ~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~-~~~~~~~s~d~~v~iwd~~~~~~~~  180 (342)
                      ......+.  +..|..++.++.|..+|.+ +..  ........  ..+.++..+ .+.+.+++.++.+..+|.. +....
T Consensus        99 ~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~--~~~~~~~~--~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~  170 (330)
T 3hxj_A           99 IVSDFTIF--EDILYVTSMDGHLYAINTD-GTE--KWRFKTKK--AIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKW  170 (330)
T ss_dssp             --CCEEEE--TTEEEEECTTSEEEEECTT-SCE--EEEEECSS--CCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEE
T ss_pred             cccCceEE--CCEEEEEecCCEEEEEcCC-CCE--EEEEcCCC--ceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeE
Confidence            22333333  5578888889999999976 322  11111111  111122223 3457778888999999987 43221


Q ss_pred             cccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEE
Q 019384          181 QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFAT  260 (342)
Q Consensus       181 ~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~s  260 (342)
                      ... .. ...+.++...+++. +.+++  +.  +..+| ....  ..+.....         ...+.+++..++|. |..
T Consensus       171 ~~~-~~-~~~~~~~~~d~~g~-l~v~t--~~--l~~~d-~~g~--~~~~~~~~---------~~~~~~~~~~~~g~-l~v  230 (330)
T 3hxj_A          171 RFK-TN-DAITSAASIGKDGT-IYFGS--DK--VYAIN-PDGT--EKWNFYAG---------YWTVTRPAISEDGT-IYV  230 (330)
T ss_dssp             EEE-CS-SCCCSCCEECTTCC-EEEES--SS--EEEEC-TTSC--EEEEECCS---------SCCCSCCEECTTSC-EEE
T ss_pred             EEe-cC-CCceeeeEEcCCCE-EEEEe--CE--EEEEC-CCCc--EEEEEccC---------CcceeceEECCCCe-EEE
Confidence            111 11 11122333445555 45555  33  34566 2221  11211110         01366778887764 556


Q ss_pred             ecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEE
Q 019384          261 GGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAV  302 (342)
Q Consensus       261 gs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las  302 (342)
                      ++.++.|..+|. +++.+..+......+.++.+.++|++.+.
T Consensus       231 ~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~  271 (330)
T 3hxj_A          231 TSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFG  271 (330)
T ss_dssp             EETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEE
T ss_pred             EcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEe
Confidence            667888888885 34444444433333455666777775543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.06  E-value=0.002  Score=53.99  Aligned_cols=118  Identities=10%  Similarity=0.091  Sum_probs=68.3

Q ss_pred             eeeeeecCCc--eEEEEEeCCCCeE-EEecC--CcEEEEEeccCceeecccCCcceeEEEEeCCCCEEE-EeeCCCcEEE
Q 019384           53 LRGEFMHGGP--VLDCCFHDDSSGF-SASAD--HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVI-TGSWDKSLKC  126 (342)
Q Consensus        53 ~~~~~~h~~~--V~~~~~~~~~~~~-s~s~D--~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-sgs~D~~I~i  126 (342)
                      +..++-|...  ...+.|.+ +.++ +.+.+  ..|+.+|+.+++...-..-............++.|+ ..-.++.+.+
T Consensus        11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v   89 (243)
T 3mbr_X           11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV   89 (243)
T ss_dssp             EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred             EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence            4555567644  56888876 4554 65654  379999999987432111111222222222345554 4456788999


Q ss_pred             EcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCC
Q 019384          127 WDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNM  176 (342)
Q Consensus       127 Wd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~  176 (342)
                      +|.++...     +........-..++.+++.++.+..+++|.++|..+.
T Consensus        90 ~D~~tl~~-----~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~  134 (243)
T 3mbr_X           90 YDLATLTP-----RARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTL  134 (243)
T ss_dssp             EETTTTEE-----EEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTC
T ss_pred             EECCcCcE-----EEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCC
Confidence            99875432     2222112223456677777776666778998988765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.04  E-value=0.00047  Score=62.98  Aligned_cols=184  Identities=11%  Similarity=0.057  Sum_probs=107.7

Q ss_pred             EEEEEcCCCCeEEEEeCC------CcEEEEECCCceeeeeeecC-C---ceEEEEEeCCCCeEEEec-------------
Q 019384           23 SNLRFSNHSDHLLVSSWD------KSVRLYDASANVLRGEFMHG-G---PVLDCCFHDDSSGFSASA-------------   79 (342)
Q Consensus        23 ~~l~fs~~~~~l~s~s~D------gti~vwd~~~~~~~~~~~h~-~---~V~~~~~~~~~~~~s~s~-------------   79 (342)
                      ..+..+|+| .++++..+      |.|.+.|..+.+++...... +   --+.+.|+++...+..+.             
T Consensus       141 h~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~  219 (462)
T 2ece_A          141 HTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKL  219 (462)
T ss_dssp             EEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCT
T ss_pred             cceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccch
Confidence            346778999 77777666      78999999988777665322 1   234577788776654442             


Q ss_pred             -------CCcEEEEEeccCcee-ecc-c-CCcceeEEEE--eCCCCEEEEee------CCCcEEEEcCCCCCCcceeee-
Q 019384           80 -------DHTVRRLVFSHGKED-ILG-K-HDAPVRCIEY--SYAAGQVITGS------WDKSLKCWDPRGASGQERTLV-  140 (342)
Q Consensus        80 -------D~~i~~w~~~~~~~~-~~~-~-h~~~V~~~~~--~~~~~~l~sgs------~D~~I~iWd~~~~~~~~~~~~-  140 (342)
                             +.+|.+||+.+++.. .+. + .......+.|  +|++++++.+.      .+++|.+|..+.+.-.....+ 
T Consensus       220 ~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId  299 (462)
T 2ece_A          220 EHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE  299 (462)
T ss_dssp             TTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred             hhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe
Confidence                   688999999876532 221 1 2233445655  99998876554      567887765432110000100 


Q ss_pred             -ee--c--------------CCCCcEEEEeccCCeEEEEEc-CCeEEEEeCCCCCCcccccccccc--------------
Q 019384          141 -GT--Y--------------PQPERVYSLSLVGNRLVVATA-GRHVNVYDLRNMSQPEQRRESSLK--------------  188 (342)
Q Consensus       141 -~~--~--------------~~~~~v~~~s~~~~~~~~~s~-d~~v~iwd~~~~~~~~~~~~~~~~--------------  188 (342)
                       ..  .              .....-+.++.+++.+.++.. .+.|.+||+.....+.......+.              
T Consensus       300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~  379 (462)
T 2ece_A          300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKL  379 (462)
T ss_dssp             ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCC
T ss_pred             CCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccC
Confidence             00  0              011223457778877665544 478999998643222111111111              


Q ss_pred             -eeeEEEEEeeCCceEEEEc
Q 019384          189 -YQTRCVRCYPNGTGYALSS  207 (342)
Q Consensus       189 -~~~~~v~~~~~~~~~~~~s  207 (342)
                       .....+.++|+|+.++++.
T Consensus       380 ~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          380 TGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCCEEEEcCCCCEEEEEc
Confidence             1246677888888877765

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.01  E-value=0.015  Score=57.56  Aligned_cols=271  Identities=10%  Similarity=-0.017  Sum_probs=152.4

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee---------------ecCCceEEEEEeCCCCeEEEecCCc
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF---------------MHGGPVLDCCFHDDSSGFSASADHT   82 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~---------------~h~~~V~~~~~~~~~~~~s~s~D~~   82 (342)
                      ....|+++..+++|.+.+ |...+-|.++|..++......               .....|.++....++.+-.|+.++-
T Consensus       256 ~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~G  334 (781)
T 3v9f_A          256 LSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGG  334 (781)
T ss_dssp             CCCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSC
T ss_pred             cCceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCe
Confidence            356799999998886554 555455788888765432211               1245688888877777878887888


Q ss_pred             EEEEEeccCceeecc----------cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeee-ecCCCCcEEE
Q 019384           83 VRRLVFSHGKEDILG----------KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVG-TYPQPERVYS  151 (342)
Q Consensus        83 i~~w~~~~~~~~~~~----------~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~~~~v~~  151 (342)
                      +..++........+.          .....|.++...+++. |..|+.++.|.+||..+...  ..... .......+.+
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~v~~  411 (781)
T 3v9f_A          335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA--IYNKENRELLSNSVLC  411 (781)
T ss_dssp             EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE--ECC-----CCCSBEEE
T ss_pred             EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE--EEccCCCCCCCcceEE
Confidence            888876654422221          1235689998877664 55677777899999753211  00000 0012245667


Q ss_pred             Eecc-CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccccee
Q 019384          152 LSLV-GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAF  230 (342)
Q Consensus       152 ~s~~-~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~  230 (342)
                      +..+ .+.+.+++.++.+..+|..+...............+.++...+++. +.+++..+   +..+|...... ..+  
T Consensus       412 i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~~G---l~~~~~~~~~~-~~~--  484 (781)
T 3v9f_A          412 SLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTHAG---VFVIDLASKKV-IHH--  484 (781)
T ss_dssp             EEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEETTE---EEEEESSSSSC-CEE--
T ss_pred             EEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEECCc---eEEEeCCCCeE-Eec--
Confidence            7665 3467778887778889876542211100000112455665555554 55555433   34576543211 111  


Q ss_pred             eeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeecc--CC-CCcceEEEEECCCCCEEEEE
Q 019384          231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQY--SK-YPTSIAALSFSRDGRLLAVA  303 (342)
Q Consensus       231 ~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~--~~-~~~~V~~v~~spdg~~las~  303 (342)
                         ............|.++...++|. |..|+.++-+..||.++++...-.  .+ ....|.++...++|.+.+++
T Consensus       485 ---~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T  556 (781)
T 3v9f_A          485 ---YDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT  556 (781)
T ss_dssp             ---ECTTTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE
T ss_pred             ---ccCcccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE
Confidence               00000000112578888888776 444555445888988765432211  11 23578999999999966644

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.73  E-value=0.0032  Score=61.24  Aligned_cols=101  Identities=14%  Similarity=0.036  Sum_probs=60.0

Q ss_pred             CCeEEEEeCCCcEEEEECCCceeeeeeecCCc-----------e-EEEEEeCCCCeEEEecCCcEEEEEeccCcee---e
Q 019384           31 SDHLLVSSWDKSVRLYDASANVLRGEFMHGGP-----------V-LDCCFHDDSSGFSASADHTVRRLVFSHGKED---I   95 (342)
Q Consensus        31 ~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~-----------V-~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~---~   95 (342)
                      +..|..++.++.|.-+|..+++.+..+.....           + ..+.+ .++.++.++.|+.+..+|..+++..   .
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~  144 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE-ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence            45677788899999999998876654432211           1 11222 3556788888999999998888743   1


Q ss_pred             cccC--CcceeEEEEeCCCCEEEEeeC------CCcEEEEcCCCCC
Q 019384           96 LGKH--DAPVRCIEYSYAAGQVITGSW------DKSLKCWDPRGAS  133 (342)
Q Consensus        96 ~~~h--~~~V~~~~~~~~~~~l~sgs~------D~~I~iWd~~~~~  133 (342)
                      ....  ...+.+--.. .+..++.+..      ++.|..+|.+++.
T Consensus       145 ~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~  189 (668)
T 1kv9_A          145 TTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGK  189 (668)
T ss_dssp             CSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             cCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCc
Confidence            1111  0111110001 1345555443      5899999987654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.61  E-value=0.036  Score=49.90  Aligned_cols=239  Identities=11%  Similarity=0.007  Sum_probs=126.6

Q ss_pred             eEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeC-CCCeE-EEecCCcEEEEEeccCceeec-cc
Q 019384           22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHD-DSSGF-SASADHTVRRLVFSHGKEDIL-GK   98 (342)
Q Consensus        22 V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~-~~~~~-s~s~D~~i~~w~~~~~~~~~~-~~   98 (342)
                      -.+.+..+++ .|+ -+....|+..++.+............+.+++|.+ ++.++ +-...+.|..++........+ ..
T Consensus        79 ~~C~~~~~~~-~l~-~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  156 (386)
T 3v65_B           79 RSCKALGPEP-VLL-FANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  156 (386)
T ss_dssp             SCEEECSSCC-EEE-EECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred             CeECCccccc-eeE-eecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence            3444444433 333 3345678888887665444433445678999984 55555 444567788888776653332 22


Q ss_pred             CCcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCCCcceeeeeecC-CCCcEEEEeccCCeEEEE-EcC-CeEEEEeCC
Q 019384           99 HDAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGASGQERTLVGTYP-QPERVYSLSLVGNRLVVA-TAG-RHVNVYDLR  174 (342)
Q Consensus        99 h~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~v~~~s~~~~~~~~~-s~d-~~v~iwd~~  174 (342)
                      .......+++.+.++.| ++-...+.|.+.+++....   ..+.... ....-+.+++.+..+..+ ... +.|..+++.
T Consensus       157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~---~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  233 (386)
T 3v65_B          157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  233 (386)
T ss_dssp             SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC---EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce---EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence            22345678888866555 5556667899888763221   1121111 111223344434444433 333 568888876


Q ss_pred             CCCCcccccccccceeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcC
Q 019384          175 NMSQPEQRRESSLKYQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP  253 (342)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  253 (342)
                      ..... ......+ ...+.+++.|++..+..+ +..+.  |+.+|.... . +...+..      +..   ....+++ .
T Consensus       234 G~~~~-~~~~~~~-~~PnGlavd~~~~~lY~aD~~~~~--I~~~d~dG~-~-~~~~~~~------~~~---~P~giav-~  297 (386)
T 3v65_B          234 GSGRR-IIADTHL-FWPNGLTIDYAGRRMYWVDAKHHV--IERANLDGS-H-RKAVISQ------GLP---HPFAITV-F  297 (386)
T ss_dssp             SCSCE-EEECSSC-SCEEEEEEEGGGTEEEEEETTTTE--EEEECTTSC-S-CEEEECS------SCS---SEEEEEE-E
T ss_pred             CCCcE-EEEECCC-CCeeeEEEeCCCCEEEEEECCCCE--EEEEeCCCC-e-eEEEEEC------CCC---CceEEEE-E
Confidence            43211 1111111 236788899766655555 44443  455776321 1 1111110      001   1345666 3


Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeecc
Q 019384          254 IYGTFATGGCDGFVNVWDGNNKKRLYQY  281 (342)
Q Consensus       254 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  281 (342)
                      .+..+++-...+.|..++..+++.+..+
T Consensus       298 ~~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          298 EDSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence            4566777778889999986555544433

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.61  E-value=0.013  Score=51.10  Aligned_cols=111  Identities=7%  Similarity=-0.033  Sum_probs=68.5

Q ss_pred             CCeEEEEEcC-CCCeEEEEeCCCcEEEEECCCceeeeeee-----cCCceEEEEEeC-CCCeEEEecC------------
Q 019384           20 DGISNLRFSN-HSDHLLVSSWDKSVRLYDASANVLRGEFM-----HGGPVLDCCFHD-DSSGFSASAD------------   80 (342)
Q Consensus        20 ~~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~~~~~~~-----h~~~V~~~~~~~-~~~~~s~s~D------------   80 (342)
                      ..+..+++++ +++ |..+...+.+.++|..++.+.....     .......+++.+ ++.++.+...            
T Consensus        80 ~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           80 GRTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CCEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence            3578899998 554 4445455558888887654322211     112467788887 7777654432            


Q ss_pred             ------CcEEEEEeccCceeecccCCcceeEEEEeCCCCEEE-EeeCCCcEEEEcCCC
Q 019384           81 ------HTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVI-TGSWDKSLKCWDPRG  131 (342)
Q Consensus        81 ------~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-sgs~D~~I~iWd~~~  131 (342)
                            +.+..++..++....+.........++++++++.|+ +-+..+.|.++|+..
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             cccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence                  456666665554332222223456789999988654 446668999999864

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.61  E-value=0.013  Score=55.76  Aligned_cols=100  Identities=11%  Similarity=0.075  Sum_probs=59.7

Q ss_pred             CCeEEEEeC-CCcEEEEEC-CCceeeeeeecCCc-----------e-EEEEEeCCCCeEEEecCCcEEEEEeccCcee--
Q 019384           31 SDHLLVSSW-DKSVRLYDA-SANVLRGEFMHGGP-----------V-LDCCFHDDSSGFSASADHTVRRLVFSHGKED--   94 (342)
Q Consensus        31 ~~~l~s~s~-Dgti~vwd~-~~~~~~~~~~h~~~-----------V-~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~--   94 (342)
                      +..+..++. ++.|.-+|. .+++.+-.+.....           + ....+ .++.++.++.|+.+..+|..+++..  
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~  140 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY-GAGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE-ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            345666666 899999999 88876654432211           1 11222 3567788888999999998888743  


Q ss_pred             -ecccCC--cceeE-EEEeCCCCEEEEeeC------CCcEEEEcCCCCC
Q 019384           95 -ILGKHD--APVRC-IEYSYAAGQVITGSW------DKSLKCWDPRGAS  133 (342)
Q Consensus        95 -~~~~h~--~~V~~-~~~~~~~~~l~sgs~------D~~I~iWd~~~~~  133 (342)
                       .+..+.  ..+.+ -... + ..++.++.      ++.|..+|.++++
T Consensus       141 ~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~  187 (571)
T 2ad6_A          141 VEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGE  187 (571)
T ss_dssp             EECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred             ecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCc
Confidence             122211  11221 1111 3 45555544      7899999987654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.58  E-value=0.012  Score=57.90  Aligned_cols=112  Identities=12%  Similarity=0.050  Sum_probs=65.3

Q ss_pred             ceEEEEEe-CCCCeEE--EecCC----cEEEEEeccC-ceeecccC-CcceeEEEEeCCCCEEEEeeCC-----CcEEEE
Q 019384           62 PVLDCCFH-DDSSGFS--ASADH----TVRRLVFSHG-KEDILGKH-DAPVRCIEYSYAAGQVITGSWD-----KSLKCW  127 (342)
Q Consensus        62 ~V~~~~~~-~~~~~~s--~s~D~----~i~~w~~~~~-~~~~~~~h-~~~V~~~~~~~~~~~l~sgs~D-----~~I~iW  127 (342)
                      .+....|+ |+++.+.  ...+|    .|+++++.++ +.  +..+ .....+++|+||++.|+-.+.|     ..|.++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            56778999 9987543  33332    4888898887 52  1111 1123468899999888766665     257778


Q ss_pred             cCCCCCCcceeeeeecCCCCcE--EEEeccCCeEEEEEcC---CeEEEEeCCCC
Q 019384          128 DPRGASGQERTLVGTYPQPERV--YSLSLVGNRLVVATAG---RHVNVYDLRNM  176 (342)
Q Consensus       128 d~~~~~~~~~~~~~~~~~~~~v--~~~s~~~~~~~~~s~d---~~v~iwd~~~~  176 (342)
                      ++.++.......... ......  ..++.+++.|+..+.+   ..|.++|+.+.
T Consensus       253 ~lgt~~~~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             ETTSCGGGCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             ECCCCchhcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            876532211122211 111112  3466677777665533   35888898764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.52  E-value=0.032  Score=47.04  Aligned_cols=153  Identities=9%  Similarity=0.034  Sum_probs=90.8

Q ss_pred             CCeEEEEEcCCCCeE-EEEeCCCcEEEEECCCceeeeeeec-CCceEEEEEeCC-CCeEEE-ecCCcEEEEEeccCceee
Q 019384           20 DGISNLRFSNHSDHL-LVSSWDKSVRLYDASANVLRGEFMH-GGPVLDCCFHDD-SSGFSA-SADHTVRRLVFSHGKEDI   95 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l-~s~s~Dgti~vwd~~~~~~~~~~~h-~~~V~~~~~~~~-~~~~s~-s~D~~i~~w~~~~~~~~~   95 (342)
                      ..+..++|+++++.| ++-...+.|.+++..+......... .....++++.++ +.++.+ ...+.|.+++.+......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            456789999976555 4555678999999976544333222 246788999864 556544 456678888876544332


Q ss_pred             cc-cCCcceeEEEEeCCCCEEEEeeC---CCcEEEEcCCCCCCcceeeeeecCC-CCcEEEEeccCCeEEEE-EcCCeEE
Q 019384           96 LG-KHDAPVRCIEYSYAAGQVITGSW---DKSLKCWDPRGASGQERTLVGTYPQ-PERVYSLSLVGNRLVVA-TAGRHVN  169 (342)
Q Consensus        96 ~~-~h~~~V~~~~~~~~~~~l~sgs~---D~~I~iWd~~~~~~~~~~~~~~~~~-~~~v~~~s~~~~~~~~~-s~d~~v~  169 (342)
                      +. ........++++|+++.|+.+..   .+.|..+++.....   ..+..... ...-++++.+++.+..+ ...+.|.
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~---~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~  192 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc---EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence            22 22245688999997666654443   36888888753211   12211111 11223444445555544 4457899


Q ss_pred             EEeCCC
Q 019384          170 VYDLRN  175 (342)
Q Consensus       170 iwd~~~  175 (342)
                      .+|+..
T Consensus       193 ~~~~~g  198 (267)
T 1npe_A          193 CLNPAQ  198 (267)
T ss_dssp             EEETTE
T ss_pred             EEecCC
Confidence            999864

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.49  E-value=0.0039  Score=58.93  Aligned_cols=232  Identities=15%  Similarity=0.149  Sum_probs=126.3

Q ss_pred             CCCeEEEEE-c-CCCCeEEEEe------------------CCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEE
Q 019384           19 SDGISNLRF-S-NHSDHLLVSS------------------WDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSA   77 (342)
Q Consensus        19 ~~~V~~l~f-s-~~~~~l~s~s------------------~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~   77 (342)
                      ..++..++| + |++.++..++                  +++++.+.|..+.+...++.-.+....+.+++++.. +++
T Consensus       133 g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt  212 (595)
T 1fwx_A          133 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFST  212 (595)
T ss_dssp             CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEE
T ss_pred             CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEE
Confidence            356888998 4 8999988774                  457899999998776666544445566777766665 455


Q ss_pred             ecCCc---------------EEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcc-eeeee
Q 019384           78 SADHT---------------VRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQE-RTLVG  141 (342)
Q Consensus        78 s~D~~---------------i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~-~~~~~  141 (342)
                      +.+..               +.+.++....              ++.++|+...-    +.|.+.|.++..... ...+.
T Consensus       213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~--------------~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ip  274 (595)
T 1fwx_A          213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIE--------------KAIAAGDYQEL----NGVKVVDGRKEASSLFTRYIP  274 (595)
T ss_dssp             ESCTTCCSSHHHHTCCSEEEEEEEEHHHHH--------------HHHHHTCSEEE----TTEEEEECSGGGCCSSEEEEE
T ss_pred             ecCcccCcchhhccccccceEEEeecccee--------------EeccCCCeeEE----CcEEEEeCcccCCceeEEEEe
Confidence            54431               2222211110              11234443332    569999987521111 11121


Q ss_pred             ecCCCCcEEEEeccCCeEEEE-EcCCeEEEEeCCCCCCc-------c--cccccccceeeEEEEEeeCCceEEEEccCCe
Q 019384          142 TYPQPERVYSLSLVGNRLVVA-TAGRHVNVYDLRNMSQP-------E--QRRESSLKYQTRCVRCYPNGTGYALSSVEGR  211 (342)
Q Consensus       142 ~~~~~~~v~~~s~~~~~~~~~-s~d~~v~iwd~~~~~~~-------~--~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~  211 (342)
                      .-..+. -+.+++++++++++ ..+.+|.++|+.+.+..       .  ............-++|+++|..+++...+++
T Consensus       275 vg~~Ph-Gv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsq  353 (595)
T 1fwx_A          275 IANNPH-GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQ  353 (595)
T ss_dssp             EESSCC-CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTE
T ss_pred             cCCCce-EEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCc
Confidence            112222 34688888866554 45578999999853100       0  0111222334567889999954455667777


Q ss_pred             EEEEEeechhhhh--------cccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEe---cCCCeE----------EEE
Q 019384          212 VAMEFFDLSEASQ--------AKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATG---GCDGFV----------NVW  270 (342)
Q Consensus       212 ~~i~~~d~~~~~~--------~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sg---s~Dg~I----------~iW  270 (342)
                      +.+  ||+.....        .....+..|.+    -.|.+.-..+.++|||++|++.   +.|+-+          .++
T Consensus       354 V~k--wdi~~a~~~~~g~~~~~vi~kidV~yq----pGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~  427 (595)
T 1fwx_A          354 VVK--WNIEDAIRAYAGEKVDPIKDKLDVHYQ----PGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLI  427 (595)
T ss_dssp             EEE--EEHHHHHHHHHTCSCCCEEEEEECSSC----EEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEE
T ss_pred             EEE--EEhhHhhhhhcccccceeEEEeecccc----cccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEE
Confidence            654  88754211        00111111100    0111112334678999998775   345532          778


Q ss_pred             eCCCc
Q 019384          271 DGNNK  275 (342)
Q Consensus       271 d~~~~  275 (342)
                      |+..+
T Consensus       428 dis~~  432 (595)
T 1fwx_A          428 DISGD  432 (595)
T ss_dssp             ECSSS
T ss_pred             EcCCC
Confidence            87643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.45  E-value=0.066  Score=48.96  Aligned_cols=152  Identities=11%  Similarity=-0.009  Sum_probs=82.4

Q ss_pred             eEEEEEeC--CCCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeC-CC----cEEEEcCCCCCCc
Q 019384           63 VLDCCFHD--DSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSW-DK----SLKCWDPRGASGQ  135 (342)
Q Consensus        63 V~~~~~~~--~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~-D~----~I~iWd~~~~~~~  135 (342)
                      ...+++.+  ++.++.+...+.|+.++...+....+.........++|+++++.|+.+.. ++    .+...+... ...
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~~~  217 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-GFK  217 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-TSC
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-cee
Confidence            45777874  45666655557788888877665444444556789999999985554443 22    233344321 111


Q ss_pred             ceeeeeecCCCCcEEEEec-cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEE-ccCCeEE
Q 019384          136 ERTLVGTYPQPERVYSLSL-VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS-SVEGRVA  213 (342)
Q Consensus       136 ~~~~~~~~~~~~~v~~~s~-~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-s~~~~~~  213 (342)
                      ....+....++.. +.++. .+..+++-...+.|..+|....... .............++++|+++.+++. .....+.
T Consensus       218 ~~~~l~~~~~p~g-iavdp~~g~lyv~d~~~~~V~~~~~~~~~~~-~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          218 VITELTKGQNCNG-AETHPINGELYFNSWNAGQVFRYDFTTQETT-PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             SEEEEEECSSCCC-EEECTTTCCEEEEETTTTEEEEEETTTTEEE-EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeccCCCceE-EEEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            1112222333332 34555 3444444456678999998754221 11111111235678999999955544 4555544


Q ss_pred             EEEeec
Q 019384          214 MEFFDL  219 (342)
Q Consensus       214 i~~~d~  219 (342)
                        .++.
T Consensus       296 --~~~~  299 (430)
T 3tc9_A          296 --RSDY  299 (430)
T ss_dssp             --EEEE
T ss_pred             --EEeC
Confidence              4554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.42  E-value=0.051  Score=52.56  Aligned_cols=262  Identities=12%  Similarity=0.033  Sum_probs=122.5

Q ss_pred             EEEEeC-CCCeE-EEecCC-----------cEEEEEeccCceeec----ccCCcceeEEEEeCCCCEEEEeeC-CCcEEE
Q 019384           65 DCCFHD-DSSGF-SASADH-----------TVRRLVFSHGKEDIL----GKHDAPVRCIEYSYAAGQVITGSW-DKSLKC  126 (342)
Q Consensus        65 ~~~~~~-~~~~~-s~s~D~-----------~i~~w~~~~~~~~~~----~~h~~~V~~~~~~~~~~~l~sgs~-D~~I~i  126 (342)
                      .+++.+ +++++ .|+.+.           .+.+||..+.....+    ..+.....++++..+++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            455554 66654 555432           467788777663322    122223335677788888888885 458999


Q ss_pred             EcCCCCCCcceeeeeecCCC-CcEEEEec-cCCeEEEEE-cC-----CeEEEEeCCCCCCccccc--ccccceeeEEEEE
Q 019384          127 WDPRGASGQERTLVGTYPQP-ERVYSLSL-VGNRLVVAT-AG-----RHVNVYDLRNMSQPEQRR--ESSLKYQTRCVRC  196 (342)
Q Consensus       127 Wd~~~~~~~~~~~~~~~~~~-~~v~~~s~-~~~~~~~~s-~d-----~~v~iwd~~~~~~~~~~~--~~~~~~~~~~v~~  196 (342)
                      ||+.+..=   ..+...... ........ ++..++.++ .+     .++.+||..+..-.....  ..++...-....+
T Consensus       270 yd~~t~~W---~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~  346 (656)
T 1k3i_A          270 YDSSSDSW---IPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY  346 (656)
T ss_dssp             EEGGGTEE---EECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred             ecCcCCce---eECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccccee
Confidence            99864310   111111111 11122333 566666666 33     468999987642110000  0000000000011


Q ss_pred             eeCCceEEEEccCCeE-------EEEEeechhhhhcccceeeeEEecCCC-CceeeeeeEEEEcC-CCCeEEEecCCC--
Q 019384          197 YPNGTGYALSSVEGRV-------AMEFFDLSEASQAKKYAFKCHRKSEAG-RDIVYPVNAIAFHP-IYGTFATGGCDG--  265 (342)
Q Consensus       197 ~~~~~~~~~~s~~~~~-------~i~~~d~~~~~~~~~~~~~~h~~~~~~-~~~~~~v~~v~~sp-~~~~l~sgs~Dg--  265 (342)
                      ..++..++.+..++.+       .+..||........  ....+... .+ ......-.++.|.. ++++++.|+.++  
T Consensus       347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~--~~~~~~~~-~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~  423 (656)
T 1k3i_A          347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK--SAGKRQSN-RGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ  423 (656)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE--EEEECEET-TEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred             ecCCceEEEECCCCcEEEecCccceeeeecCCcceee--cCCccccc-cccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence            1233444455444322       34567764332110  11111100 00 00000123444543 677888888543  


Q ss_pred             ---------eEEEEeCCCceeeecc--CCCCcce-EEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccCCcccc
Q 019384          266 ---------FVNVWDGNNKKRLYQY--SKYPTSI-AALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIEVKP  332 (342)
Q Consensus       266 ---------~I~iWd~~~~~~~~~~--~~~~~~V-~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (342)
                               .|.+||..+..-....  .....+. .+++..|||++++.|+......-........+.+|+.+...|..
T Consensus       424 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~  502 (656)
T 1k3i_A          424 DSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK  502 (656)
T ss_dssp             SSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE
T ss_pred             CCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee
Confidence                     6888988765422211  1222333 45677799999999875431100011123457777766555543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.41  E-value=0.038  Score=46.63  Aligned_cols=200  Identities=7%  Similarity=0.035  Sum_probs=109.3

Q ss_pred             cccCCcceeEEEEeCCCCEEEE-eeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC-CeEEEEE-cCCeEEEEe
Q 019384           96 LGKHDAPVRCIEYSYAAGQVIT-GSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG-NRLVVAT-AGRHVNVYD  172 (342)
Q Consensus        96 ~~~h~~~V~~~~~~~~~~~l~s-gs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~-~~~~~~s-~d~~v~iwd  172 (342)
                      +.+-...+..++++|+++.|++ ...++.|...|+. +.......+..   ....-.+.+.+ +.++.+. .++.+.+++
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g---~~D~EGIa~~~~g~~~vs~E~~~~l~~~~   97 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF---VKDLETIEYIGDNQFVISDERDYAIYVIS   97 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS---CSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC---CCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence            3444457899999998776654 5667788888875 32211111111   12233344433 3444443 345677777


Q ss_pred             CCCCCCcc--cccc-----cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384          173 LRNMSQPE--QRRE-----SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP  245 (342)
Q Consensus       173 ~~~~~~~~--~~~~-----~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~  245 (342)
                      +.......  ....     ...+.....+++.|.++.++++.......++-|+.....  ....+..+...... .....
T Consensus        98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~--~~l~i~~~~~~~~~-~~~~d  174 (255)
T 3qqz_A           98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS--NELHISKDKALQRQ-FTLDD  174 (255)
T ss_dssp             ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS--SCCEEEECHHHHHT-CCSSC
T ss_pred             cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC--Cceeeecchhhccc-cccCC
Confidence            65433210  1110     111233578999999888877776655566566521000  01111111000000 01124


Q ss_pred             eeEEEEcCCCC-eEEEecCCCeEEEEeCCCceeee--ccC-CC------CcceEEEEECCCCCEEEEE
Q 019384          246 VNAIAFHPIYG-TFATGGCDGFVNVWDGNNKKRLY--QYS-KY------PTSIAALSFSRDGRLLAVA  303 (342)
Q Consensus       246 v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~~~~~~--~~~-~~------~~~V~~v~~spdg~~las~  303 (342)
                      +.+++|+|... +++.....+.+.++|.+.. .+.  .+. +.      ...-..|+|.|+|++.+++
T Consensus       175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs  241 (255)
T 3qqz_A          175 VSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS  241 (255)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred             ceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence            68899999755 5677778889999997743 332  232 11      1356899999999977764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.34  E-value=0.089  Score=48.08  Aligned_cols=150  Identities=13%  Similarity=0.064  Sum_probs=88.1

Q ss_pred             CeEEEEEcC-CCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eEEEec-CCc---EEEEEeccCce-
Q 019384           21 GISNLRFSN-HSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSASA-DHT---VRRLVFSHGKE-   93 (342)
Q Consensus        21 ~V~~l~fs~-~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~-D~~---i~~w~~~~~~~-   93 (342)
                      ....|+|+| ++..|..+...+.|+.+|..++.+............++|.+++. ++.+.. ++.   ..+|....+.. 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~  217 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK  217 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence            557899998 45556555555899999998876655544455688999987776 655543 221   22333333221 


Q ss_pred             --eecccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCC--CCcEEEEeccCCeEEEE-EcCCe
Q 019384           94 --DILGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ--PERVYSLSLVGNRLVVA-TAGRH  167 (342)
Q Consensus        94 --~~~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~--~~~v~~~s~~~~~~~~~-s~d~~  167 (342)
                        ..+. .......++++| ++.++++-..++.|..+|......   ..+.....  ...-+.++.+++.++.+ ...+.
T Consensus       218 ~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~---~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~  293 (430)
T 3tc9_A          218 VITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET---TPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY  293 (430)
T ss_dssp             SEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE---EEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred             eeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE---EEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence              1221 123456788999 566566666678899999764221   11111111  12234566677755444 45578


Q ss_pred             EEEEeCC
Q 019384          168 VNVYDLR  174 (342)
Q Consensus       168 v~iwd~~  174 (342)
                      |..++..
T Consensus       294 I~~~~~d  300 (430)
T 3tc9_A          294 ILRSDYD  300 (430)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeCC
Confidence            8887764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.33  E-value=0.091  Score=48.05  Aligned_cols=153  Identities=12%  Similarity=0.029  Sum_probs=87.0

Q ss_pred             CCeEEEEEcCC--CCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCC----cEEEEEeccCc-
Q 019384           20 DGISNLRFSNH--SDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADH----TVRRLVFSHGK-   92 (342)
Q Consensus        20 ~~V~~l~fs~~--~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~----~i~~w~~~~~~-   92 (342)
                      .....|+|+|+  ...|..+...+.|+.+|..++.+...........+++|.+++.++.+...+    .-.++...... 
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            35678999985  444544544489999999877766655545568899998777776655422    11122211111 


Q ss_pred             e--eecccCCcceeEEEEeC-CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCC-CcEEEEeccCCeEEEE-EcCCe
Q 019384           93 E--DILGKHDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQP-ERVYSLSLVGNRLVVA-TAGRH  167 (342)
Q Consensus        93 ~--~~~~~h~~~V~~~~~~~-~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~-~~v~~~s~~~~~~~~~-s~d~~  167 (342)
                      .  ..+. .......+++.| ++.+.++-..++.|..+|..++... .......... ..-+.++.+++.+..+ ...+.
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-EEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-EEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-EEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence            1  1111 123345688888 5555556666788999997643210 1111111111 1124566667755544 45578


Q ss_pred             EEEEeCC
Q 019384          168 VNVYDLR  174 (342)
Q Consensus       168 v~iwd~~  174 (342)
                      |+.+|+.
T Consensus       297 I~~~~~d  303 (433)
T 4hw6_A          297 IYRVDYN  303 (433)
T ss_dssp             EEEEEBC
T ss_pred             EEEEeCC
Confidence            8888764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.33  E-value=0.07  Score=46.71  Aligned_cols=262  Identities=10%  Similarity=0.108  Sum_probs=124.0

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee-eee-e---ecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL-RGE-F---MHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK   92 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~-~~~-~---~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~   92 (342)
                      ....+.+|.|.+++..++ ++.+|.|. .-.+.++. ... .   .....+.++.|.+ +.++.++.++.+.. ..+.++
T Consensus        34 ~~~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~  109 (327)
T 2xbg_A           34 TTATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQ  109 (327)
T ss_dssp             CSSCEEEEEESSSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEE-ESSTTS
T ss_pred             CCCcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEE-ECCCCC
Confidence            345799999988777777 56677653 23333331 111 1   1234678888875 55666666664422 222222


Q ss_pred             -eeecc---cCCcceeEEEEeCCCCEEEEeeCCCcE-EEEcCCCCCCcceeeeeecCCCCcEEEEeccC-CeEEEEEcCC
Q 019384           93 -EDILG---KHDAPVRCIEYSYAAGQVITGSWDKSL-KCWDPRGASGQERTLVGTYPQPERVYSLSLVG-NRLVVATAGR  166 (342)
Q Consensus        93 -~~~~~---~h~~~V~~~~~~~~~~~l~sgs~D~~I-~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~-~~~~~~s~d~  166 (342)
                       ...+.   .+...+..+.+.+++..++.+ .++.| +-+|-  +..  -.... ......+..+.+.+ +.++.++.++
T Consensus       110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~Dg--G~t--W~~~~-~~~~~~~~~~~~~~~~~~~~~g~~G  183 (327)
T 2xbg_A          110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDS--GKN--WQALV-QEAIGVMRNLNRSPSGEYVAVSSRG  183 (327)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESST--TSS--EEEEE-CSCCCCEEEEEECTTSCEEEEETTS
T ss_pred             CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCC--CCC--CEEee-cCCCcceEEEEEcCCCcEEEEECCC
Confidence             11111   233457778777666555544 46655 44442  111  11111 11223344554432 2344444444


Q ss_pred             e-EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeee
Q 019384          167 H-VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYP  245 (342)
Q Consensus       167 ~-v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~  245 (342)
                      . .+..|-. +. .-+............+.+.+++..++. +.++.+.  ..+....   ..|....    .........
T Consensus       184 ~~~~S~d~g-G~-tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~--~s~~D~G---~tW~~~~----~~~~~~~~~  251 (327)
T 2xbg_A          184 SFYSTWEPG-QT-AWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIA--FSDPDNS---ENWGELL----SPLRRNSVG  251 (327)
T ss_dssp             SEEEEECTT-CS-SCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEE--EEETTEE---EEECCCB----CTTSSCCSC
T ss_pred             cEEEEeCCC-CC-ceeECCCCCCCccceeEECCCCCEEEE-eCCceEE--EecCCCC---CeeEecc----CCcccCCcc
Confidence            3 3334421 10 011111112233556667777765544 4455432  2211000   0010000    000000113


Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC---CCCcceEEEEECCCCCEEEEE
Q 019384          246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS---KYPTSIAALSFSRDGRLLAVA  303 (342)
Q Consensus       246 v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~---~~~~~V~~v~~spdg~~las~  303 (342)
                      +.++++.+++..++.+. +|.| ++..+.++....+.   .....++++.|.++++++++|
T Consensus       252 ~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G  310 (327)
T 2xbg_A          252 FLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILG  310 (327)
T ss_dssp             EEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEEC
T ss_pred             eEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEc
Confidence            67888998877777665 6777 44444444433322   234678899998777766654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.33  E-value=0.075  Score=47.04  Aligned_cols=239  Identities=11%  Similarity=0.019  Sum_probs=126.9

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeC-CCCeE-EEecCCcEEEEEeccCceee-c
Q 019384           20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHD-DSSGF-SASADHTVRRLVFSHGKEDI-L   96 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~-~~~~~-s~s~D~~i~~w~~~~~~~~~-~   96 (342)
                      ++.++.+..++..++++  ....|+..++.+............+.+++|.+ ++.++ +-...+.|..++........ +
T Consensus        34 d~~~C~~~~~~~~ll~~--~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  111 (349)
T 3v64_C           34 DRRSCKALGPEPVLLFA--NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  111 (349)
T ss_dssp             TSSCEEESSSCCEEEEE--CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             CCCcccccccCceeEee--cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence            44556655554433333  44568888887655444333445578999984 55555 44456778888877655332 2


Q ss_pred             ccCCcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCCCcceeeeeecC-CCCcEEEEeccCCeEE-EEEcC-CeEEEEe
Q 019384           97 GKHDAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGASGQERTLVGTYP-QPERVYSLSLVGNRLV-VATAG-RHVNVYD  172 (342)
Q Consensus        97 ~~h~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-~~~~v~~~s~~~~~~~-~~s~d-~~v~iwd  172 (342)
                      .........+++.+.++.| .+-...+.|.+.+++....   ..+.... ....-+.+++.+..+. +-... +.|..++
T Consensus       112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~  188 (349)
T 3v64_C          112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  188 (349)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce---EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence            2223446789999866555 5556678899999864221   2221111 1112233444334444 33333 6788888


Q ss_pred             CCCCCCcccccccccceeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEE
Q 019384          173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF  251 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~  251 (342)
                      +...... ......+ ...+.+++.|++..+..+ +..+.  |+.+|.... . +...+..      ...   ....+++
T Consensus       189 ~dG~~~~-~~~~~~~-~~PnGla~d~~~~~lY~aD~~~~~--I~~~~~dG~-~-~~~~~~~------~~~---~P~giav  253 (349)
T 3v64_C          189 MDGSGRR-IIADTHL-FWPNGLTIDYAGRRMYWVDAKHHV--IERANLDGS-H-RKAVISQ------GLP---HPFAITV  253 (349)
T ss_dssp             TTSCSCE-ESCCSSC-SCEEEEEEETTTTEEEEEETTTTE--EEEEETTSC-S-CEEEECS------SCS---SEEEEEE
T ss_pred             CCCCCcE-EEEECCC-CCcceEEEeCCCCEEEEEECCCCE--EEEEeCCCC-c-eEEEEeC------CCC---CceEEEE
Confidence            7643211 1111111 246788999876666555 44443  455665321 1 1111110      001   1345666


Q ss_pred             cCCCCeEEEecCCCeEEEEeCCCceeee
Q 019384          252 HPIYGTFATGGCDGFVNVWDGNNKKRLY  279 (342)
Q Consensus       252 sp~~~~l~sgs~Dg~I~iWd~~~~~~~~  279 (342)
                      . .+..+++-...+.|..++..+++.+.
T Consensus       254 ~-~~~ly~td~~~~~V~~~~~~~G~~~~  280 (349)
T 3v64_C          254 F-EDSLYWTDWHTKSINSANKFTGKNQE  280 (349)
T ss_dssp             E-TTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             E-CCEEEEecCCCCeEEEEEccCCCccE
Confidence            3 45666777778888888855554433

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.27  E-value=0.11  Score=47.56  Aligned_cols=235  Identities=9%  Similarity=0.041  Sum_probs=118.4

Q ss_pred             eEEEEEeCC---CCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCC---C-cEEEEcCCCCCCc
Q 019384           63 VLDCCFHDD---SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWD---K-SLKCWDPRGASGQ  135 (342)
Q Consensus        63 V~~~~~~~~---~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D---~-~I~iWd~~~~~~~  135 (342)
                      ...++|.++   +.++.+-..+.|+.++..++....+.........++++++++++++....   . .+...+.......
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~  220 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTE  220 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCC
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeec
Confidence            457888763   66666654478888888777655554445568899999999855554321   1 2333332211110


Q ss_pred             ceeeeeecCCCCcEEEEec-cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc-cCCeEE
Q 019384          136 ERTLVGTYPQPERVYSLSL-VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS-VEGRVA  213 (342)
Q Consensus       136 ~~~~~~~~~~~~~v~~~s~-~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~  213 (342)
                       ...+.....+.. +.++. .++..++-..++.|..+|..++.................++++|+++.++++. ....+ 
T Consensus       221 -~~~~~~~~~P~g-iavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I-  297 (433)
T 4hw6_A          221 -RLSLCNARGAKT-CAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI-  297 (433)
T ss_dssp             -EEEEEECSSBCC-CEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE-
T ss_pred             -cccccccCCCCE-EEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE-
Confidence             011222222221 23555 33333343455678889887543211111111111234688999998555554 44544 


Q ss_pred             EEEeechhhhhcc--cceeeeE---EecCCC---CceeeeeeEEEE---------cCCCCeEEEecCCCeEEEEeCCCce
Q 019384          214 MEFFDLSEASQAK--KYAFKCH---RKSEAG---RDIVYPVNAIAF---------HPIYGTFATGGCDGFVNVWDGNNKK  276 (342)
Q Consensus       214 i~~~d~~~~~~~~--~~~~~~h---~~~~~~---~~~~~~v~~v~~---------sp~~~~l~sgs~Dg~I~iWd~~~~~  276 (342)
                       +.++........  ...+.+.   .....+   .........+++         .++|.++++-...+.|+.++.. +.
T Consensus       298 -~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G~  375 (433)
T 4hw6_A          298 -YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-GR  375 (433)
T ss_dssp             -EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-SE
T ss_pred             -EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-CC
Confidence             445543211100  1111111   000000   000112456888         6777778887888899999853 43


Q ss_pred             eeecc-------CC----------CCcceEEEEEC-CCCCEEEE
Q 019384          277 RLYQY-------SK----------YPTSIAALSFS-RDGRLLAV  302 (342)
Q Consensus       277 ~~~~~-------~~----------~~~~V~~v~~s-pdg~~las  302 (342)
                      .....       .+          .-..-..|+++ ++|.++++
T Consensus       376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa  419 (433)
T 4hw6_A          376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG  419 (433)
T ss_dssp             EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred             EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE
Confidence            22111       01          11246799999 66665553

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.19  E-value=0.12  Score=46.65  Aligned_cols=238  Identities=8%  Similarity=-0.022  Sum_probs=124.8

Q ss_pred             CCCcEEEEECCCceeeeeeecCCceEEEEEeC-CCCeEEE-ecCCcEEEEEeccC----c-eeecccCCcceeEEEEeCC
Q 019384           39 WDKSVRLYDASANVLRGEFMHGGPVLDCCFHD-DSSGFSA-SADHTVRRLVFSHG----K-EDILGKHDAPVRCIEYSYA  111 (342)
Q Consensus        39 ~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~-~~~~~s~-s~D~~i~~w~~~~~----~-~~~~~~h~~~V~~~~~~~~  111 (342)
                      ....|+..++..............+.+++|.+ ++.++-+ ...+.|..+++...    . ...+.........+++.+.
T Consensus        90 ~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~  169 (400)
T 3p5b_L           90 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  169 (400)
T ss_dssp             ETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT
T ss_pred             ccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec
Confidence            35789999987765444444566788999985 4555544 45677888887652    1 2223333456778999985


Q ss_pred             CCEE-EEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEE-c-CCeEEEEeCCCCCCcccccccccc
Q 019384          112 AGQV-ITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVAT-A-GRHVNVYDLRNMSQPEQRRESSLK  188 (342)
Q Consensus       112 ~~~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s-~-d~~v~iwd~~~~~~~~~~~~~~~~  188 (342)
                      ++.| .+-...+.|.+.|++...  ....+........-+.+++....++.+. . ...|...++....... .....+ 
T Consensus       170 ~~~lY~~d~~~~~I~~~~~~g~~--~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~-~~~~~l-  245 (400)
T 3p5b_L          170 HSNIYWTDSVLGTVSVADTKGVK--RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-LVTENI-  245 (400)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCS--EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE-EECSSC-
T ss_pred             CCceEEEECCCCeEEEEeCCCCc--eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE-EEECCC-
Confidence            5555 555667889999986422  1122211111112233444334444333 2 2568888876432211 111111 


Q ss_pred             eeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeE
Q 019384          189 YQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFV  267 (342)
Q Consensus       189 ~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I  267 (342)
                      ...+.+++.+++..+..+. ....  |+.+|.... . +...+...    ....  + ...+++. .+..+++-...+.|
T Consensus       246 ~~P~glavd~~~~~lY~aD~~~~~--I~~~d~dG~-~-~~~~~~~~----~~l~--~-P~gl~v~-~~~lywtd~~~~~V  313 (400)
T 3p5b_L          246 QWPNGITLDLLSGRLYWVDSKLHS--ISSIDVNGG-N-RKTILEDE----KRLA--H-PFSLAVF-EDKVFWTDIINEAI  313 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTE--EEEEETTSC-C-CEEEEECS----STTS--S-EEEEEEE-TTEEEEEESSSCSE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCE--EEEEeCCCC-c-cEEEEeCC----CCCC--C-CEEEEEe-CCEEEEecCCCCeE
Confidence            2467888998776665553 4443  455666321 1 11111100    0001  1 2245553 34567777777889


Q ss_pred             EEEeCCCceeeeccCCCCcceEEEE
Q 019384          268 NVWDGNNKKRLYQYSKYPTSIAALS  292 (342)
Q Consensus       268 ~iWd~~~~~~~~~~~~~~~~V~~v~  292 (342)
                      ..+|..+++.+..+........+++
T Consensus       314 ~~~~~~~G~~~~~i~~~~~~p~~i~  338 (400)
T 3p5b_L          314 FSANRLTGSDVNLLAENLLSPEDMV  338 (400)
T ss_dssp             EEEESSSCCCCEEEECSCSCEEEEE
T ss_pred             EEEEcCCCCceEEEecCCCCCceEE
Confidence            9998766655544433223334443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.14  E-value=0.17  Score=48.40  Aligned_cols=101  Identities=11%  Similarity=0.049  Sum_probs=60.9

Q ss_pred             CCeEEEEeC-CCcEEEEEC-CCceeeeeeecCCc------------eEEEEEe-CCCC----eEEEecCCcEEEEEeccC
Q 019384           31 SDHLLVSSW-DKSVRLYDA-SANVLRGEFMHGGP------------VLDCCFH-DDSS----GFSASADHTVRRLVFSHG   91 (342)
Q Consensus        31 ~~~l~s~s~-Dgti~vwd~-~~~~~~~~~~h~~~------------V~~~~~~-~~~~----~~s~s~D~~i~~w~~~~~   91 (342)
                      +..|..++. ++.|.-+|. .+++.+-.+.....            ...+.+. .++.    ++.++.|+.+.-+|..++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            345666777 899999999 88876655433221            1123443 3455    788889999999998888


Q ss_pred             cee---ecccCC--cceeE-EEEeCCCCEEEEee------CCCcEEEEcCCCCC
Q 019384           92 KED---ILGKHD--APVRC-IEYSYAAGQVITGS------WDKSLKCWDPRGAS  133 (342)
Q Consensus        92 ~~~---~~~~h~--~~V~~-~~~~~~~~~l~sgs------~D~~I~iWd~~~~~  133 (342)
                      +..   .+..+.  ..+.+ -.+. ++ .++.++      .++.|..+|.+++.
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~  193 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGE  193 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred             CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCc
Confidence            743   121111  12221 1111 33 555554      38999999988654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.03  E-value=0.17  Score=45.40  Aligned_cols=211  Identities=9%  Similarity=0.042  Sum_probs=110.6

Q ss_pred             eEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEE-EeeCCCcEEEEcCCCCCCcceeeee-ecCCCCcEEE
Q 019384           74 GFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVI-TGSWDKSLKCWDPRGASGQERTLVG-TYPQPERVYS  151 (342)
Q Consensus        74 ~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-sgs~D~~I~iWd~~~~~~~~~~~~~-~~~~~~~v~~  151 (342)
                      .+..+....|+.+++.......+.........++|.+.++.|+ +-...+.|..+++.....  ...+. ....+ .-+.
T Consensus        89 ~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~--~~~~~~~~~~p-~gla  165 (386)
T 3v65_B           89 VLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV--EEVVSTGLESP-GGLA  165 (386)
T ss_dssp             EEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE--EEEECSSCSCC-CCEE
T ss_pred             eeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc--EEEEeCCCCCc-cEEE
Confidence            3444455677777776655433333334578999998666554 555667899999864321  11111 11112 2245


Q ss_pred             EeccCCeEE-EEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccccee
Q 019384          152 LSLVGNRLV-VATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAF  230 (342)
Q Consensus       152 ~s~~~~~~~-~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~  230 (342)
                      +++.+..++ +-...+.|.+.++...... ...... -.....+++.|.+..++.......-.|+.++....  ......
T Consensus       166 vd~~~g~lY~~d~~~~~I~~~~~dg~~~~-~l~~~~-l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~--~~~~~~  241 (386)
T 3v65_B          166 VDWVHDKLYWTDSGTSRIEVANLDGAHRK-VLLWQS-LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS--GRRIIA  241 (386)
T ss_dssp             EETTTTEEEEEETTTTEEEECBTTSCSCE-EEECSS-CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEEEE
T ss_pred             EEeCCCeEEEEcCCCCeEEEEeCCCCceE-EeecCC-CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC--CcEEEE
Confidence            665444444 4455567888887643211 111111 12467788888766665554333234455655321  111100


Q ss_pred             eeEEecCCCCceeeeeeEEEEcCCCCe-EEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEE
Q 019384          231 KCHRKSEAGRDIVYPVNAIAFHPIYGT-FATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLA  301 (342)
Q Consensus       231 ~~h~~~~~~~~~~~~v~~v~~sp~~~~-l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~la  301 (342)
                      ..        . ....+.|+++|++.. +++-+..+.|..+|.........+......-..|++ .++.++.
T Consensus       242 ~~--------~-~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~  303 (386)
T 3v65_B          242 DT--------H-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYW  303 (386)
T ss_dssp             CS--------S-CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEE
T ss_pred             EC--------C-CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEE
Confidence            00        0 113578999986654 566667789999997643222222222334577888 3344333

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.01  E-value=0.16  Score=44.81  Aligned_cols=208  Identities=9%  Similarity=0.033  Sum_probs=108.0

Q ss_pred             ecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEE-EeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC
Q 019384           78 SADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVI-TGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG  156 (342)
Q Consensus        78 s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~  156 (342)
                      +....|+..++.......+.........++|++.++.|+ +-...+.|..+++.....  ............-+.+++.+
T Consensus        50 ~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~--~~~~~~~~~~p~glavd~~~  127 (349)
T 3v64_C           50 ANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV--EEVVSTGLESPGGLAVDWVH  127 (349)
T ss_dssp             ECBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEECSSCSCCCEEEEETTT
T ss_pred             ecccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc--eEEEeCCCCCccEEEEecCC
Confidence            344556666665544333322334578999998666664 545668899999864322  11111111112234566544


Q ss_pred             CeE-EEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEe
Q 019384          157 NRL-VVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK  235 (342)
Q Consensus       157 ~~~-~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~  235 (342)
                      ..+ ++-...+.|.+.++...... ...... -.....+++.|.+..++.......-.|+.++.....  ....+.    
T Consensus       128 g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~-l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~~~~----  199 (349)
T 3v64_C          128 DKLYWTDSGTSRIEVANLDGAHRK-VLLWQS-LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIAD----  199 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCE-EEECTT-CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEESCC----
T ss_pred             CeEEEEcCCCCeEEEEcCCCCceE-EEEeCC-CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--cEEEEE----
Confidence            444 44455578999988653211 111111 124678888986665555543322244556553211  110000    


Q ss_pred             cCCCCceeeeeeEEEEcCCCCe-EEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEE
Q 019384          236 SEAGRDIVYPVNAIAFHPIYGT-FATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLA  301 (342)
Q Consensus       236 ~~~~~~~~~~v~~v~~sp~~~~-l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~la  301 (342)
                           ......+.++++|++.. +++-+..+.|..+|.........+......-..|++ .++.++.
T Consensus       200 -----~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~  260 (349)
T 3v64_C          200 -----THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYW  260 (349)
T ss_dssp             -----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEE
T ss_pred             -----CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEE
Confidence                 00113578999986654 566666789999997643222212222334577888 3444333

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.99  E-value=0.15  Score=44.24  Aligned_cols=225  Identities=9%  Similarity=0.001  Sum_probs=119.4

Q ss_pred             CCcEEEEECCCceeeeeeecCCceEEEEEeC-CCCeE-EEecCCcEEEEEecc----Cc-eeecccCCcceeEEEEeCCC
Q 019384           40 DKSVRLYDASANVLRGEFMHGGPVLDCCFHD-DSSGF-SASADHTVRRLVFSH----GK-EDILGKHDAPVRCIEYSYAA  112 (342)
Q Consensus        40 Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~-~~~~~-s~s~D~~i~~w~~~~----~~-~~~~~~h~~~V~~~~~~~~~  112 (342)
                      ...|+..|+.+............+.++.|.+ ++.++ +-...+.|..++...    .. ...+.........+++.+.+
T Consensus         9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            4568999998765544444456678999985 45565 444567888888775    22 22232222456789998766


Q ss_pred             CEE-EEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC--CeEEEEeCCCCCCcccccccccce
Q 019384          113 GQV-ITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG--RHVNVYDLRNMSQPEQRRESSLKY  189 (342)
Q Consensus       113 ~~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d--~~v~iwd~~~~~~~~~~~~~~~~~  189 (342)
                      +.| ++-...+.|.+.|+....  .............-..+++.+..++.+..+  +.|..+++.... ........+ .
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~--~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~-~  164 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVK--RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENI-Q  164 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSS--EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSC-S
T ss_pred             CeEEEEECCCCEEEEEeCCCCc--eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCC-C
Confidence            555 555667899999976321  112221111111223344434444444332  578878775321 111111111 2


Q ss_pred             eeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEE
Q 019384          190 QTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVN  268 (342)
Q Consensus       190 ~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~  268 (342)
                      ..+.+++.++++.+..+. ..+.  |..+|.... ..+.+ ...    .....   ....+++. .+..+++-...+.|.
T Consensus       165 ~P~gla~d~~~~~lY~~D~~~~~--I~~~d~dg~-~~~~~-~~~----~~~~~---~P~giav~-~~~ly~~d~~~~~V~  232 (316)
T 1ijq_A          165 WPNGITLDLLSGRLYWVDSKLHS--ISSIDVNGG-NRKTI-LED----EKRLA---HPFSLAVF-EDKVFWTDIINEAIF  232 (316)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTE--EEEEETTSC-SCEEE-EEC----TTTTS---SEEEEEEE-TTEEEEEETTTTEEE
T ss_pred             CceEEEEeccCCEEEEEECCCCe--EEEEecCCC-ceEEE-eec----CCccC---CcEEEEEE-CCEEEEEECCCCeEE
Confidence            467888998766665554 4444  455666421 11111 110    00001   12356664 356677777788999


Q ss_pred             EEeCCCceeeec
Q 019384          269 VWDGNNKKRLYQ  280 (342)
Q Consensus       269 iWd~~~~~~~~~  280 (342)
                      .++..+++.+..
T Consensus       233 ~~~~~~g~~~~~  244 (316)
T 1ijq_A          233 SANRLTGSDVNL  244 (316)
T ss_dssp             EEETTTCCCCEE
T ss_pred             EEeCCCCcceEE
Confidence            998766654433

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.81  E-value=0.019  Score=56.00  Aligned_cols=240  Identities=8%  Similarity=0.001  Sum_probs=119.4

Q ss_pred             CCcEEEEECCCceeeeeeecCCceEEEEEeC-CCCeEEE-ecCCcEEEEEecc----Cce-eecccCCcceeEEEEeCCC
Q 019384           40 DKSVRLYDASANVLRGEFMHGGPVLDCCFHD-DSSGFSA-SADHTVRRLVFSH----GKE-DILGKHDAPVRCIEYSYAA  112 (342)
Q Consensus        40 Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~-~~~~~s~-s~D~~i~~w~~~~----~~~-~~~~~h~~~V~~~~~~~~~  112 (342)
                      .+.|++.++.+............+.+++|.+ .+.++.+ ...+.|+.+++..    ... ..+.........+++.+.+
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~  464 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  464 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence            4678888887655444333345567888875 4445443 3456788888765    221 2222122335568887655


Q ss_pred             CE-EEEeeCCCcEEEEcCCCCCCcceeeeee-cCCCCcEEEEeccCCeEEEEE-cC-CeEEEEeCCCCCCcccccccccc
Q 019384          113 GQ-VITGSWDKSLKCWDPRGASGQERTLVGT-YPQPERVYSLSLVGNRLVVAT-AG-RHVNVYDLRNMSQPEQRRESSLK  188 (342)
Q Consensus       113 ~~-l~sgs~D~~I~iWd~~~~~~~~~~~~~~-~~~~~~v~~~s~~~~~~~~~s-~d-~~v~iwd~~~~~~~~~~~~~~~~  188 (342)
                      +. +++-...+.|.+.++....  ....+.. ...+ .-+.+++.+..|+.+. .. +.|..+++....... .....+ 
T Consensus       465 g~LY~tD~~~~~I~v~d~dg~~--~~~l~~~~~~~P-~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~-l~~~~l-  539 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKGVK--RKTLFREQGSKP-RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-LVTENI-  539 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSSCC--EEEECCCSSCCC-CCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE-ESCSSC-
T ss_pred             CcEEEEeccCCeEEEEecCCCc--eEEEEeCCCCCc-ceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE-EEeCCC-
Confidence            44 4555667889999976321  1111111 1112 2233444334444332 22 567666664321111 100111 


Q ss_pred             eeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeE
Q 019384          189 YQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFV  267 (342)
Q Consensus       189 ~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I  267 (342)
                      ...+.+++.|++..++++ +..+.  |+.++.... ..+.+ +....      ... ....|++..+ ..+++....+.|
T Consensus       540 ~~PnGlavd~~~~~LY~aD~~~~~--I~~~d~dG~-~~~~~-~~~~~------~~~-~P~glavd~~-~lywtd~~~~~V  607 (699)
T 1n7d_A          540 QWPNGITLDLLSGRLYWVDSKLHS--ISSIDVNGG-NRKTI-LEDEK------RLA-HPFSLAVFED-KVFWTDIINEAI  607 (699)
T ss_dssp             SSCCCEEECTTTCCEEEEETTTTE--EEEECSSSS-CCEEE-CCCSS------SCS-SCCCCEEETT-EEEEECSTTTCE
T ss_pred             CCccEEEEeccCCEEEEEecCCCe--EEEEccCCC-ceEEE-EecCC------cCC-CceEeEEECC-EEEEEeCCCCeE
Confidence            235678888876555544 44444  455666321 11111 11000      000 1224455443 566777778899


Q ss_pred             EEEeCCCceeeeccCCCCcceEEEEECCC
Q 019384          268 NVWDGNNKKRLYQYSKYPTSIAALSFSRD  296 (342)
Q Consensus       268 ~iWd~~~~~~~~~~~~~~~~V~~v~~spd  296 (342)
                      ..++..+++.+..+.......++|++..+
T Consensus       608 ~~~d~~~G~~~~~i~~~~~~P~~i~v~~~  636 (699)
T 1n7d_A          608 FSANRLTGSDVNLLAENLLSPEDMVLFHQ  636 (699)
T ss_dssp             EEEETTTEEEEECCCTTCSSCCCCCBCSS
T ss_pred             EEEEccCCCceEEeecCCCCCcEEEEeCc
Confidence            99998888777666433333455555433

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.79  E-value=0.23  Score=43.25  Aligned_cols=202  Identities=10%  Similarity=0.063  Sum_probs=103.1

Q ss_pred             CCcEEEEEeccCc--eeecccCCcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccC
Q 019384           80 DHTVRRLVFSHGK--EDILGKHDAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVG  156 (342)
Q Consensus        80 D~~i~~w~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~  156 (342)
                      ...|+..+++...  ...+.........++|.+.++.| .+-...+.|..+++...... ...+........-+++++.+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~-~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV-QNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC-CEEEEECCSCCCEEEEETTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce-EEEEcCCCCCccEEEEEcCC
Confidence            4567777776553  11222222346688999865555 45556678999998643211 11121111112234566544


Q ss_pred             CeEE-EEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEe
Q 019384          157 NRLV-VATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK  235 (342)
Q Consensus       157 ~~~~-~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~  235 (342)
                      ..++ +-...+.|.++++...... .... ..-.....+++.|.+..++.......-.|+.++.... . .. .+..   
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~-~l~~-~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~-~~-~~~~---  162 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRK-VLFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-S-RF-IIIN---  162 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCE-EEEC-SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-S-CE-EEEC---
T ss_pred             CeEEEEECCCCEEEEEECCCCcEE-EEEe-CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-C-eE-EEEE---
Confidence            4444 4455678999998653211 1111 1112457788888766555554322223445554321 1 11 1100   


Q ss_pred             cCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECC
Q 019384          236 SEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSR  295 (342)
Q Consensus       236 ~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~sp  295 (342)
                        .  . ....+.++++|+++ ++++=+..+.|..+|...........+....-..+++..
T Consensus       163 --~--~-l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~  218 (318)
T 3sov_A          163 --S--E-IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE  218 (318)
T ss_dssp             --S--S-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET
T ss_pred             --C--C-CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC
Confidence              0  0 11357899998655 456666778999999864322111122233456777743

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.76  E-value=0.3  Score=44.06  Aligned_cols=206  Identities=11%  Similarity=0.051  Sum_probs=105.7

Q ss_pred             EEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEE-EeeCCCcEEEEcCCCCC--CcceeeeeecCCCCcEEE
Q 019384           75 FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVI-TGSWDKSLKCWDPRGAS--GQERTLVGTYPQPERVYS  151 (342)
Q Consensus        75 ~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-sgs~D~~I~iWd~~~~~--~~~~~~~~~~~~~~~v~~  151 (342)
                      +..+....|+..++.......+......+..++|++.++.|+ +-...+.|..+++....  ......+........-++
T Consensus        86 ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla  165 (400)
T 3p5b_L           86 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  165 (400)
T ss_dssp             EEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEE
T ss_pred             eEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEE
Confidence            444455778888777665444444456788999998766664 44556789999876421  111111211111112234


Q ss_pred             EeccCCeEE-EEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccccee
Q 019384          152 LSLVGNRLV-VATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAF  230 (342)
Q Consensus       152 ~s~~~~~~~-~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~  230 (342)
                      +++.++.|+ +-...+.|.+.|+..... ....... -.....+++.|.+..++.......-.|+.++....  .....+
T Consensus       166 vD~~~~~lY~~d~~~~~I~~~~~~g~~~-~~l~~~~-~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~--~~~~~~  241 (400)
T 3p5b_L          166 VDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFREN-GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSLV  241 (400)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTTCSE-EEEEECS-SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC--SCEEEE
T ss_pred             EEecCCceEEEECCCCeEEEEeCCCCce-EEEEeCC-CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC--ccEEEE
Confidence            554344444 445567888888865321 1111111 12357788888666555544322123444554321  111100


Q ss_pred             eeEEecCCCCceeeeeeEEEEcCCCCeE-EEecCCCeEEEEeCCCcee--eeccCCCCcceEEEEE
Q 019384          231 KCHRKSEAGRDIVYPVNAIAFHPIYGTF-ATGGCDGFVNVWDGNNKKR--LYQYSKYPTSIAALSF  293 (342)
Q Consensus       231 ~~h~~~~~~~~~~~~v~~v~~sp~~~~l-~sgs~Dg~I~iWd~~~~~~--~~~~~~~~~~V~~v~~  293 (342)
                      ..        . ....+.|+++|+++.| ++-+..+.|...|.+....  +.........-.+|++
T Consensus       242 ~~--------~-l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v  298 (400)
T 3p5b_L          242 TE--------N-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV  298 (400)
T ss_dssp             CS--------S-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE
T ss_pred             EC--------C-CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE
Confidence            00        0 1135789999876655 5556678999999864322  2221122233457777

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.75  E-value=0.23  Score=42.71  Aligned_cols=184  Identities=9%  Similarity=-0.036  Sum_probs=95.6

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCC--cEEEEECCCceeeeeeec--CCceEEEEEeCCCCeEEEe-cCCcEEEEEeccCcee
Q 019384           20 DGISNLRFSNHSDHLLVSSWDK--SVRLYDASANVLRGEFMH--GGPVLDCCFHDDSSGFSAS-ADHTVRRLVFSHGKED   94 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dg--ti~vwd~~~~~~~~~~~h--~~~V~~~~~~~~~~~~s~s-~D~~i~~w~~~~~~~~   94 (342)
                      .....++|+++++++++.....  .|..+|..++++......  ......++..+++.++.+. .++.|..++...+...
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence            4578899999998766654433  355667666655433221  1223344444444444433 4677766665543211


Q ss_pred             ec-----------ccCCcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCC-CCCcceeeeeecCCCCcEEEEeccCCeEEE
Q 019384           95 IL-----------GKHDAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRG-ASGQERTLVGTYPQPERVYSLSLVGNRLVV  161 (342)
Q Consensus        95 ~~-----------~~h~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~-~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~  161 (342)
                      ..           ...-...+.+  +++++.| ++-+..+.|..+|+.. +.......+.....+ .-++++.+++.+++
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P-~gi~vd~dG~l~va  228 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI-DDFAFDVEGNLYGA  228 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC-SSEEEBTTCCEEEE
T ss_pred             EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCC-CCeEECCCCCEEEE
Confidence            10           0111233455  7777665 5556678999999864 111111112211122 22456666665555


Q ss_pred             EEcCCeEEEEeCCCCCCcccccccccc-eeeEEEEEe---eCCceEEEEcc
Q 019384          162 ATAGRHVNVYDLRNMSQPEQRRESSLK-YQTRCVRCY---PNGTGYALSSV  208 (342)
Q Consensus       162 ~s~d~~v~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~---~~~~~~~~~s~  208 (342)
                      ....+.|..+|.. ++.... ...... ....++++.   |+++.+++.+.
T Consensus       229 ~~~~~~V~~~~~~-G~~~~~-~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          229 THIYNSVVRIAPD-RSTTII-AQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             CBTTCCEEEECTT-CCEEEE-ECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             eCCCCeEEEECCC-CCEEEE-eecccccCCceEEEEecccCCCCEEEEECC
Confidence            5556789999875 322111 011111 246777777   77666655543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.71  E-value=0.35  Score=47.75  Aligned_cols=215  Identities=11%  Similarity=0.021  Sum_probs=108.9

Q ss_pred             EEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCCC--cceeeeeecCCCCcEEE
Q 019384           75 FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGASG--QERTLVGTYPQPERVYS  151 (342)
Q Consensus        75 ~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~~--~~~~~~~~~~~~~~v~~  151 (342)
                      +..+....|+..++.......+......+..++|.+..+.| .+-...+.|+.+++.....  .....+........-++
T Consensus       398 Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLA  477 (791)
T 3m0c_C          398 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  477 (791)
T ss_dssp             EEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred             cccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceee
Confidence            33444556777766655543343344567899999866555 4555667899898864211  11122221111223355


Q ss_pred             EeccCCeEE-EEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccccee
Q 019384          152 LSLVGNRLV-VATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAF  230 (342)
Q Consensus       152 ~s~~~~~~~-~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~  230 (342)
                      +++.++.|+ +-...+.|.+.++..... .......+ .....|++.|.+..++.......-.|+..++....  +...+
T Consensus       478 vD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~l-~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~--~~~lv  553 (791)
T 3m0c_C          478 VDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENG-SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLV  553 (791)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTT-CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEEE
T ss_pred             eeecCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCCC-CCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc--eEEEE
Confidence            666565444 445567899999865321 11111111 24678888887665555543321234455553211  11111


Q ss_pred             eeEEecCCCCceeeeeeEEEEcCCCCeE-EEecCCCeEEEEeCCCceeeeccC--CCCcceEEEEECCCCCEEEEEE
Q 019384          231 KCHRKSEAGRDIVYPVNAIAFHPIYGTF-ATGGCDGFVNVWDGNNKKRLYQYS--KYPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       231 ~~h~~~~~~~~~~~~v~~v~~sp~~~~l-~sgs~Dg~I~iWd~~~~~~~~~~~--~~~~~V~~v~~spdg~~las~s  304 (342)
                      ..         .....+.|++.+.++.| ++=...+.|...+.........+.  +....-.+|++.  +.+|-.+.
T Consensus       554 ~~---------~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD  619 (791)
T 3m0c_C          554 TE---------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTD  619 (791)
T ss_dssp             CS---------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEE
T ss_pred             eC---------CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEE
Confidence            00         01136789999766554 555666789999886433222221  122234566663  33444444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.68  E-value=0.57  Score=46.26  Aligned_cols=223  Identities=9%  Similarity=0.019  Sum_probs=116.1

Q ss_pred             CCCcEEEEECCCceeeeeeecCCceEEEEEeC-CCCeE-EEecCCcEEEEEeccC----c-eeecccCCcceeEEEEeCC
Q 019384           39 WDKSVRLYDASANVLRGEFMHGGPVLDCCFHD-DSSGF-SASADHTVRRLVFSHG----K-EDILGKHDAPVRCIEYSYA  111 (342)
Q Consensus        39 ~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~-~~~~~-s~s~D~~i~~w~~~~~----~-~~~~~~h~~~V~~~~~~~~  111 (342)
                      ....|+..++..............+.+++|.. .+.++ +-...+.|+.+++...    . ..++.........|++.+.
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~  481 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  481 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence            45668888887655444444556778899975 45555 4445567887877653    1 2233333455678999987


Q ss_pred             CCEE-EEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEE-cC-CeEEEEeCCCCCCcccccccccc
Q 019384          112 AGQV-ITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVAT-AG-RHVNVYDLRNMSQPEQRRESSLK  188 (342)
Q Consensus       112 ~~~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s-~d-~~v~iwd~~~~~~~~~~~~~~~~  188 (342)
                      ++.| .+-...+.|.+.++....  ....+........-+.+++....|+.+- .. ..|...++...... ......+ 
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~--~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~lv~~~l-  557 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVK--RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENI-  557 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSS--EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEECSSC-
T ss_pred             CCcEEEEecCCCeEEEEeCCCCe--EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-EEEeCCC-
Confidence            7655 455667899999986321  1122211111112233444434454443 22 57888887643211 1111111 


Q ss_pred             eeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeE
Q 019384          189 YQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFV  267 (342)
Q Consensus       189 ~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I  267 (342)
                      ...+.|++.+.+..++++. ...  .|+.+++...  .+...+...      ....++ .+|++.. +..+++-...+.|
T Consensus       558 ~~P~GLavD~~~~~LYwaD~~~~--~I~~~d~dG~--~~~~v~~~~------~~l~~P-~glav~~-~~lYwtD~~~~~I  625 (791)
T 3m0c_C          558 QWPNGITLDLLSGRLYWVDSKLH--SISSIDVNGG--NRKTILEDE------KRLAHP-FSLAVFE-DKVFWTDIINEAI  625 (791)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTT--EEEEEETTSC--SCEEEEECT------TTTSSE-EEEEEET-TEEEEEETTTTEE
T ss_pred             CCceEEEEecCCCeEEEEeCCCC--cEEEEecCCC--ceEEEecCC------CccCCC-CEEEEeC-CEEEEEECCCCEE
Confidence            2467788887666655553 333  3455665322  111111100      001112 2455543 3566777777888


Q ss_pred             EEEeCCCcee
Q 019384          268 NVWDGNNKKR  277 (342)
Q Consensus       268 ~iWd~~~~~~  277 (342)
                      ...+..+++.
T Consensus       626 ~~~dk~tG~~  635 (791)
T 3m0c_C          626 FSANRLTGSD  635 (791)
T ss_dssp             EEEETTTCCC
T ss_pred             EEEeCCCCcc
Confidence            8887655543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.60  E-value=0.84  Score=47.13  Aligned_cols=180  Identities=13%  Similarity=0.103  Sum_probs=94.2

Q ss_pred             CCCeEEEEEcCC------CCeEEEEeC-CCcEEEEECCCceeeeeeec--CCceEEEEEe--CCC-CeEEEecCCcEEEE
Q 019384           19 SDGISNLRFSNH------SDHLLVSSW-DKSVRLYDASANVLRGEFMH--GGPVLDCCFH--DDS-SGFSASADHTVRRL   86 (342)
Q Consensus        19 ~~~V~~l~fs~~------~~~l~s~s~-Dgti~vwd~~~~~~~~~~~h--~~~V~~~~~~--~~~-~~~s~s~D~~i~~w   86 (342)
                      .+.|.|+++.+.      ++.+|.|.+ |++++|+.+..-.......-  .....++++.  .+. .++.+-.||.+..+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            457999999864      368999997 99999999976444333222  2234455543  222 24577788887666


Q ss_pred             Eecc--Cce----eecccCCcceeEEEEeCCCC-EEEEeeCCCcEEEEcCCCCCCcceeeeeecC--CCCcEEEEec--c
Q 019384           87 VFSH--GKE----DILGKHDAPVRCIEYSYAAG-QVITGSWDKSLKCWDPRGASGQERTLVGTYP--QPERVYSLSL--V  155 (342)
Q Consensus        87 ~~~~--~~~----~~~~~h~~~V~~~~~~~~~~-~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~--~~~~v~~~s~--~  155 (342)
                      .++.  +..    ...-| ..++.-..+...+. .++.+| |+..-++--+  ..   ..+....  .-..+..|+.  .
T Consensus       633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~--~~---l~~s~l~~~~v~~~~~F~se~~  705 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN--HK---LVFSNVNLKEVNYMCPLNSDGY  705 (1158)
T ss_dssp             EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS--SS---EEEEEBSSSCCCEEEEECCSSS
T ss_pred             EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC--Cc---eEEeccChHHhceEeccCcccC
Confidence            5543  221    11222 33454444443333 333333 3433333222  11   1111111  1112333433  2


Q ss_pred             CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc
Q 019384          156 GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS  207 (342)
Q Consensus       156 ~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s  207 (342)
                      ++.++.++ ++.++|.-+.+... ......++...+..++++|+.+.++++.
T Consensus       706 ~~g~v~~~-~~~LrI~~i~~~~~-~~~~~ipL~~Tprri~y~~~~~~~~v~~  755 (1158)
T 3ei3_A          706 PDSLALAN-NSTLTIGTIDEIQK-LHIRTVPLYESPRKICYQEVSQCFGVLS  755 (1158)
T ss_dssp             TTEEEEEC-SSCEEEEEECCSSS-EEEEEEECSSEEEEEEEEGGGTEEEEEE
T ss_pred             CCcEEEEc-CCceEEEEecccCC-eeEEEEeCCCCceEEEEcCCCCEEEEEE
Confidence            45666444 55699888755422 1222334556678888888877665554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.53  E-value=0.36  Score=42.14  Aligned_cols=192  Identities=10%  Similarity=0.105  Sum_probs=103.1

Q ss_pred             eeEEEEeCCCCEEEEee-CCCcEEEEcCCCCCCcceeeeeecC--C--CCcEEEEec---cC-CeEEEEEc---------
Q 019384          103 VRCIEYSYAAGQVITGS-WDKSLKCWDPRGASGQERTLVGTYP--Q--PERVYSLSL---VG-NRLVVATA---------  164 (342)
Q Consensus       103 V~~~~~~~~~~~l~sgs-~D~~I~iWd~~~~~~~~~~~~~~~~--~--~~~v~~~s~---~~-~~~~~~s~---------  164 (342)
                      -.+++|.+....|+.++ ..++|..||...+.... ..+....  .  ......+.+   ++ +.++++..         
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~-~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN-VVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE-ECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE-EecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            45788988667776665 78999999985322111 1111100  1  112345555   33 34444333         


Q ss_pred             -----CCeEEEEeCC---CCCCcccccccc-----------cceeeEEEEEeeCCceEEEEccC-CeEEEEEeechhhhh
Q 019384          165 -----GRHVNVYDLR---NMSQPEQRRESS-----------LKYQTRCVRCYPNGTGYALSSVE-GRVAMEFFDLSEASQ  224 (342)
Q Consensus       165 -----d~~v~iwd~~---~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~~s~~-~~~~i~~~d~~~~~~  224 (342)
                           +..|..||+.   +++.........           .......++..++|+..++++.. +.|  +.++.... .
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I--~rV~pdG~-~  170 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAI--ARVSADGK-T  170 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEE--EEECTTSC-C
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeE--EEEeCCCC-E
Confidence                 4668899998   554321111000           11235678889999988888776 653  34554221 1


Q ss_pred             cccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCcee--eeccC--C---CCcceEE-EEECCC
Q 019384          225 AKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKR--LYQYS--K---YPTSIAA-LSFSRD  296 (342)
Q Consensus       225 ~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~--~~~~~--~---~~~~V~~-v~~spd  296 (342)
                      ...+.+..    . ........+.|+++|+|..|+.....|.+..+|+.....  +. ..  +   ....... ++.-.+
T Consensus       171 ~~~~~~~~----~-~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~  244 (334)
T 2p9w_A          171 VSTFAWES----G-NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVG  244 (334)
T ss_dssp             EEEEEECC----C-CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEET
T ss_pred             EeeeeecC----C-CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccC
Confidence            11111110    0 000111367899999999887776699999999875433  21 11  2   1112334 344457


Q ss_pred             CCEEEEEE
Q 019384          297 GRLLAVAS  304 (342)
Q Consensus       297 g~~las~s  304 (342)
                      |+.|+++.
T Consensus       245 G~vllV~~  252 (334)
T 2p9w_A          245 NESVLVGA  252 (334)
T ss_dssp             TEEEEEEE
T ss_pred             CEEEEEEc
Confidence            88755554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.45  E-value=0.43  Score=42.06  Aligned_cols=188  Identities=12%  Similarity=0.165  Sum_probs=100.8

Q ss_pred             CCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCC----C-C--eEEEe--c--CCcEEEEEec--cCceeec
Q 019384           30 HSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDD----S-S--GFSAS--A--DHTVRRLVFS--HGKEDIL   96 (342)
Q Consensus        30 ~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~----~-~--~~s~s--~--D~~i~~w~~~--~~~~~~~   96 (342)
                      ...+++.....+-+.+||+ .++.+..+. .+.++.+..-++    + .  ++.++  .  ++++++++++  ++....+
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~-~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i  116 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM  116 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEEC-CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEcc-CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence            3455777777889999999 555544432 256666655432    1 1  23333  3  5789999774  3333322


Q ss_pred             cc------CC-cceeEEEE--eCCCC--EEEEeeCCCcEEEEcCCCC-CC-cceeeeeecCCCCcEEEEecc--CCeEEE
Q 019384           97 GK------HD-APVRCIEY--SYAAG--QVITGSWDKSLKCWDPRGA-SG-QERTLVGTYPQPERVYSLSLV--GNRLVV  161 (342)
Q Consensus        97 ~~------h~-~~V~~~~~--~~~~~--~l~sgs~D~~I~iWd~~~~-~~-~~~~~~~~~~~~~~v~~~s~~--~~~~~~  161 (342)
                      ..      .. ..++.+++  ++.+.  +++....++.+..|++... .+ .....+..+.....+-.+..+  ...++.
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv  196 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYI  196 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEE
Confidence            11      12 45666777  66443  4677778899999987421 11 112233333333344444444  457888


Q ss_pred             EEcCCeEEEEeCCCCC--C--ccccc-ccccceeeEEEEEe--eCCc-eEEEEccCCeEEEEEeech
Q 019384          162 ATAGRHVNVYDLRNMS--Q--PEQRR-ESSLKYQTRCVRCY--PNGT-GYALSSVEGRVAMEFFDLS  220 (342)
Q Consensus       162 ~s~d~~v~iwd~~~~~--~--~~~~~-~~~~~~~~~~v~~~--~~~~-~~~~~s~~~~~~i~~~d~~  220 (342)
                      +-.+..|..+|.+-..  .  ..... ...+...+..++..  ++++ ++++++.+. ..+.+||..
T Consensus       197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~-~s~~Vydr~  262 (355)
T 3amr_A          197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN-SSYAIYDRQ  262 (355)
T ss_dssp             EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG-TEEEEEESS
T ss_pred             ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC-CEEEEEECC
Confidence            8888667667754221  1  11111 12233356677764  4555 344444333 234567764

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.16  E-value=0.62  Score=41.08  Aligned_cols=68  Identities=9%  Similarity=0.003  Sum_probs=44.4

Q ss_pred             CceEEEEEeCCCCeEEEecCCcEEEEEeccCceee------cccCCcceeEEEEeCC---CCEEEEe-eCC-----CcEE
Q 019384           61 GPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDI------LGKHDAPVRCIEYSYA---AGQVITG-SWD-----KSLK  125 (342)
Q Consensus        61 ~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~------~~~h~~~V~~~~~~~~---~~~l~sg-s~D-----~~I~  125 (342)
                      .....++|.+++.++.+..++.|.+++  .+....      ..........++++|+   +..|+.+ +..     ..|.
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            356789999888888888888888887  333211      1112346789999998   5555443 322     5677


Q ss_pred             EEcCC
Q 019384          126 CWDPR  130 (342)
Q Consensus       126 iWd~~  130 (342)
                      .++..
T Consensus       109 r~~~~  113 (352)
T 2ism_A          109 RLRHL  113 (352)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            77765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.12  E-value=0.35  Score=45.99  Aligned_cols=56  Identities=18%  Similarity=0.125  Sum_probs=34.9

Q ss_pred             CCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCc
Q 019384          121 DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQP  179 (342)
Q Consensus       121 D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~  179 (342)
                      ++.|..||+.+++..  ..... ........+...++.+++++.|+.++.||.++++..
T Consensus       465 ~G~l~A~D~~tG~~~--W~~~~-~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l  520 (582)
T 1flg_A          465 VGSLRAMDPVSGKVV--WEHKE-HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             SEEEEEECTTTCCEE--EEEEE-SSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceEEEEECCCCCEE--EEecC-CCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence            578999998765431  11111 111111123345677888999999999999998654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.02  E-value=0.46  Score=41.87  Aligned_cols=180  Identities=14%  Similarity=0.199  Sum_probs=91.1

Q ss_pred             CCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEE------EeccCCe--EEEEEc----CCeEEEEeCCCCCC
Q 019384          111 AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYS------LSLVGNR--LVVATA----GRHVNVYDLRNMSQ  178 (342)
Q Consensus       111 ~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~------~s~~~~~--~~~~s~----d~~v~iwd~~~~~~  178 (342)
                      ...+++.....+.+.++|+. +..     ++.... .....      +...+..  ++.++.    +++|++|++.....
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~-G~~-----l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~  111 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLD-GKM-----LHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETT-SCE-----EEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC
T ss_pred             CccEEEEEcCCCCEEEEcCC-CcE-----EEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC
Confidence            33556666677889999984 221     111111 22222      3333332  444444    46899997732111


Q ss_pred             ccccc-cc--cc--c-eeeEEEEE--eeC-Cc-eEEEEccCCeEEEEEeechhhhhc-ccceeeeEEecCCCCceeeeee
Q 019384          179 PEQRR-ES--SL--K-YQTRCVRC--YPN-GT-GYALSSVEGRVAMEFFDLSEASQA-KKYAFKCHRKSEAGRDIVYPVN  247 (342)
Q Consensus       179 ~~~~~-~~--~~--~-~~~~~v~~--~~~-~~-~~~~~s~~~~~~i~~~d~~~~~~~-~~~~~~~h~~~~~~~~~~~~v~  247 (342)
                      ..... ..  ++  . .....++.  .|. +. ++++...++.+.  .|.+...... ....+...-..      ...+-
T Consensus       112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~--q~~l~~~~~g~~~~~lVR~f~l------gsq~E  183 (355)
T 3amr_A          112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFE--QYELKADKNGYISGKKVRAFKM------NSQTE  183 (355)
T ss_dssp             CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEE--EEEEEECTTSCEEEEEEEEEEC------SSCEE
T ss_pred             ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEE--EEEEEeCCCCcccceEEEEecC------CCCcc
Confidence            11111 00  11  1 12233444  554 33 456666667554  3554321110 00111111111      11366


Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEeCC-----CceeeeccC-CC-CcceEEEEE--CCCCC-EEEEEEe
Q 019384          248 AIAFHPIYGTFATGGCDGFVNVWDGN-----NKKRLYQYS-KY-PTSIAALSF--SRDGR-LLAVASS  305 (342)
Q Consensus       248 ~v~~sp~~~~l~sgs~Dg~I~iWd~~-----~~~~~~~~~-~~-~~~V~~v~~--spdg~-~las~s~  305 (342)
                      .|+..+....|..+-+|.-|..++.+     +++.+..+. ++ ...+..|++  .++|+ ||+++|.
T Consensus       184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ  251 (355)
T 3amr_A          184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ  251 (355)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred             eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC
Confidence            78888989999999999877777755     234454432 22 347888988  67777 7776663

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=95.94  E-value=0.74  Score=40.00  Aligned_cols=219  Identities=9%  Similarity=-0.006  Sum_probs=115.8

Q ss_pred             CCcEEEEECCCce--eeeeeecCCceEEEEEeC-CCCeE-EEecCCcEEEEEeccCce--eecccCCcceeEEEEeCCCC
Q 019384           40 DKSVRLYDASANV--LRGEFMHGGPVLDCCFHD-DSSGF-SASADHTVRRLVFSHGKE--DILGKHDAPVRCIEYSYAAG  113 (342)
Q Consensus        40 Dgti~vwd~~~~~--~~~~~~h~~~V~~~~~~~-~~~~~-s~s~D~~i~~w~~~~~~~--~~~~~h~~~V~~~~~~~~~~  113 (342)
                      ...|+..|+....  ..........+.++.|.+ ++.++ +-...+.|..++......  ..+...-.....+++.+.++
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            5679999987653  111222234566888874 45554 444567788888766531  22222224567889987555


Q ss_pred             EE-EEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEE--EEeccCCeEEEEEc--CCeEEEEeCCCCCCcccccccccc
Q 019384          114 QV-ITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVY--SLSLVGNRLVVATA--GRHVNVYDLRNMSQPEQRRESSLK  188 (342)
Q Consensus       114 ~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~--~~s~~~~~~~~~s~--d~~v~iwd~~~~~~~~~~~~~~~~  188 (342)
                      .| .+-...+.|.+++++....   ..+.. .......  .+++.+..+..+..  .+.|..+++...... ......+ 
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~---~~l~~-~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~~~~l-  165 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLR---KVLFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-IIINSEI-  165 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSC---EEEEC-SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-EEECSSC-
T ss_pred             eEEEEECCCCEEEEEECCCCcE---EEEEe-CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-EEEECCC-
Confidence            55 5556667899999864221   12211 1112223  34443344444432  357877877542111 1111111 


Q ss_pred             eeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeE
Q 019384          189 YQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFV  267 (342)
Q Consensus       189 ~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I  267 (342)
                      ...+.+++++++..+..+ +..+.  |+.+|.... ..+.+ ...      ...   ....+++.. +..+++-...+.|
T Consensus       166 ~~Pnglavd~~~~~lY~aD~~~~~--I~~~d~dG~-~~~~~-~~~------~~~---~P~glav~~-~~lywtd~~~~~V  231 (318)
T 3sov_A          166 YWPNGLTLDYEEQKLYWADAKLNF--IHKSNLDGT-NRQAV-VKG------SLP---HPFALTLFE-DILYWTDWSTHSI  231 (318)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTE--EEEEETTSC-SCEEE-ECS------CCS---CEEEEEEET-TEEEEEETTTTEE
T ss_pred             CCccEEEEeccCCEEEEEECCCCE--EEEEcCCCC-ceEEE-ecC------CCC---CceEEEEeC-CEEEEEecCCCeE
Confidence            245788899866655554 44444  455665321 11111 110      001   134556643 4567777778899


Q ss_pred             EEEeCCCceee
Q 019384          268 NVWDGNNKKRL  278 (342)
Q Consensus       268 ~iWd~~~~~~~  278 (342)
                      ..++..+++.+
T Consensus       232 ~~~~~~~G~~~  242 (318)
T 3sov_A          232 LACNKYTGEGL  242 (318)
T ss_dssp             EEEETTTCCSC
T ss_pred             EEEECCCCCce
Confidence            99998666543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.90  E-value=0.78  Score=39.90  Aligned_cols=153  Identities=10%  Similarity=0.028  Sum_probs=83.1

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc-ee
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK-ED   94 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~-~~   94 (342)
                      +....+++++|.+++..++.+...+..+-+|-...... ........+..+.+.+++.++.++.++.+.+...+.+. ..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~  239 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWG  239 (327)
T ss_dssp             SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEC
T ss_pred             CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeE
Confidence            34457899999999887776644444444443121111 11234567788888888888888888876655322122 11


Q ss_pred             ecc----cCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeec-CCCCcEEEEec-cCCeEEEEEcCCeE
Q 019384           95 ILG----KHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTY-PQPERVYSLSL-VGNRLVVATAGRHV  168 (342)
Q Consensus        95 ~~~----~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~-~~~~~v~~~s~-~~~~~~~~s~d~~v  168 (342)
                      .+.    .+...+.++++.+++..++.+ .++.|. +..+.+..  -..+... ..+..+..+.+ +++.+++++.+|.|
T Consensus       240 ~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i~-~S~DgG~t--W~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i  315 (327)
T 2xbg_A          240 ELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGALL-CSQDGGQT--WQQDVDVKKVPSNFYKILFFSPDQGFILGQKGIL  315 (327)
T ss_dssp             CCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCEE-EESSTTSS--CEECGGGTTSSSCCCEEEEEETTEEEEECSTTEE
T ss_pred             eccCCcccCCcceEEEEecCCCEEEEEe-CCCeEE-EeCCCCcc--cEEcCccCCCCCCeEEEEEECCCceEEEcCCceE
Confidence            111    123458889998876655554 577663 32222221  1111111 11122333433 45567778888877


Q ss_pred             EEEeC
Q 019384          169 NVYDL  173 (342)
Q Consensus       169 ~iwd~  173 (342)
                      .-++-
T Consensus       316 ~~~~~  320 (327)
T 2xbg_A          316 LRYVT  320 (327)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            76653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=95.84  E-value=0.8  Score=39.60  Aligned_cols=203  Identities=11%  Similarity=0.071  Sum_probs=104.8

Q ss_pred             ecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCC--Ccceeeee-ecCCCCcEEEEe
Q 019384           78 SADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGAS--GQERTLVG-TYPQPERVYSLS  153 (342)
Q Consensus        78 s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~--~~~~~~~~-~~~~~~~v~~~s  153 (342)
                      +....|+..++.......+.........++|+++++.| .+-...+.|..+|+....  ......+. ....+ .-+.++
T Consensus         7 ~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p-~glavd   85 (316)
T 1ijq_A            7 TNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP-DGLAVD   85 (316)
T ss_dssp             ECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC-CEEEEE
T ss_pred             ECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc-CEEEEe
Confidence            34456777887766533333334567899999876655 455566899999986410  11111121 11122 234555


Q ss_pred             ccCCeEE-EEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeee
Q 019384          154 LVGNRLV-VATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKC  232 (342)
Q Consensus       154 ~~~~~~~-~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~  232 (342)
                      +.++.++ +-...+.|.++|+.... ........ -.....+++.|.+..++.......-.|+.++.... ...  .+..
T Consensus        86 ~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~-~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~--~~~~  160 (316)
T 1ijq_A           86 WIHSNIYWTDSVLGTVSVADTKGVK-RKTLFREN-GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIY--SLVT  160 (316)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSS-EEEEEECT-TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEE--EEEC
T ss_pred             ecCCeEEEEECCCCEEEEEeCCCCc-eEEEEECC-CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeE--EEEE
Confidence            5444444 44566789999986432 11111111 12467888888666555544332123444554221 111  0100


Q ss_pred             EEecCCCCceeeeeeEEEEcCCCCe-EEEecCCCeEEEEeCCCce--eeeccCCCCcceEEEEEC
Q 019384          233 HRKSEAGRDIVYPVNAIAFHPIYGT-FATGGCDGFVNVWDGNNKK--RLYQYSKYPTSIAALSFS  294 (342)
Q Consensus       233 h~~~~~~~~~~~~v~~v~~sp~~~~-l~sgs~Dg~I~iWd~~~~~--~~~~~~~~~~~V~~v~~s  294 (342)
                              ......+.++++|+++. +++-+..+.|..+|.....  .+............|++.
T Consensus       161 --------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~  217 (316)
T 1ijq_A          161 --------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF  217 (316)
T ss_dssp             --------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE
T ss_pred             --------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE
Confidence                    00113578999987665 4666677899999986422  222211122335677774

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.67  E-value=1.3  Score=40.94  Aligned_cols=208  Identities=12%  Similarity=0.041  Sum_probs=103.4

Q ss_pred             eEEEEEeC--CCCeEEEecC-CcEEEEEeccCceeeccc----CCcceeEEEE-------eCCCCEEEEeeCCC------
Q 019384           63 VLDCCFHD--DSSGFSASAD-HTVRRLVFSHGKEDILGK----HDAPVRCIEY-------SYAAGQVITGSWDK------  122 (342)
Q Consensus        63 V~~~~~~~--~~~~~s~s~D-~~i~~w~~~~~~~~~~~~----h~~~V~~~~~-------~~~~~~l~sgs~D~------  122 (342)
                      ...++|.|  ++.++.+-.. +.|++.|...+....+..    .......++|       +++++.|+.+...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            45677875  3455555433 467777877766544322    1235789999       99998665554443      


Q ss_pred             -cEEEEcCCCCCCcc----eeeeeecCCCCcEEEEeccCCeE-EEEEcCCeEEEEeCC-------CCCC--c---c----
Q 019384          123 -SLKCWDPRGASGQE----RTLVGTYPQPERVYSLSLVGNRL-VVATAGRHVNVYDLR-------NMSQ--P---E----  180 (342)
Q Consensus       123 -~I~iWd~~~~~~~~----~~~~~~~~~~~~v~~~s~~~~~~-~~~s~d~~v~iwd~~-------~~~~--~---~----  180 (342)
                       .|.+.+........    ...+....++..+ .+......| ++-..++.|..+|+.       ++..  +   .    
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~gi-avdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAYKQCNGA-TIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEESCCCCE-EECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeeccCCCceEE-EEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence             25666643211110    0123333333322 455533444 445566779999986       4432  0   0    


Q ss_pred             --cccccccceeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhcc--cceeeeE---EecCCC----CceeeeeeE
Q 019384          181 --QRRESSLKYQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQAK--KYAFKCH---RKSEAG----RDIVYPVNA  248 (342)
Q Consensus       181 --~~~~~~~~~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~~--~~~~~~h---~~~~~~----~~~~~~v~~  248 (342)
                        .............++++|+++.+.++ +....+  +.++........  ...+.+.   .....+    .....|-..
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I--~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYF--MRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE--EEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEE--EEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence              00111111234678999999865555 444444  344432111100  0111111   000000    001112213


Q ss_pred             EEEc-------CCCCeEEEecCCCeEEEEeCC
Q 019384          249 IAFH-------PIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       249 v~~s-------p~~~~l~sgs~Dg~I~iWd~~  273 (342)
                      ++..       +++.++++=...+.|+.++..
T Consensus       378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~  409 (496)
T 3kya_A          378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE  409 (496)
T ss_dssp             EEEECTTCCSSCCEEEEEEEGGGTEEEEECTT
T ss_pred             EEEccccccccCCCeEEEEECCCCEEEEEeCC
Confidence            4444       456777777778899999843

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.45  E-value=1.6  Score=40.41  Aligned_cols=152  Identities=11%  Similarity=0.024  Sum_probs=84.1

Q ss_pred             CeEEEEEcCC-CC-eEEEEeCCCcEEEEECCCceeeeeeecC----CceEEEEE-------eCCCC-eEEEecCC-----
Q 019384           21 GISNLRFSNH-SD-HLLVSSWDKSVRLYDASANVLRGEFMHG----GPVLDCCF-------HDDSS-GFSASADH-----   81 (342)
Q Consensus        21 ~V~~l~fs~~-~~-~l~s~s~Dgti~vwd~~~~~~~~~~~h~----~~V~~~~~-------~~~~~-~~s~s~D~-----   81 (342)
                      .-..|+|+|. .. ++++-...+.|++.|+.++.+.....-.    .....++|       .+++. ++.+...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999983 44 4444444578999999887765544321    24788999       87766 66665543     


Q ss_pred             c--EEEEEecc-Cce------eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCC-------CCCC-----cc---
Q 019384           82 T--VRRLVFSH-GKE------DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPR-------GASG-----QE---  136 (342)
Q Consensus        82 ~--i~~w~~~~-~~~------~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~-------~~~~-----~~---  136 (342)
                      .  +.+.+... +..      ..+.. ......++++|++ .++++-..++.|..+|+.       ++..     ..   
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence            1  33333222 111      11111 1234567889855 445566677889999986       3322     00   


Q ss_pred             -eeeeeecC--CCCcEEEEeccCCeEEEE-EcCCeEEEEeC
Q 019384          137 -RTLVGTYP--QPERVYSLSLVGNRLVVA-TAGRHVNVYDL  173 (342)
Q Consensus       137 -~~~~~~~~--~~~~v~~~s~~~~~~~~~-s~d~~v~iwd~  173 (342)
                       ...+....  ....-++++.+++.+..+ +....|+.+|.
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence             00111111  112345566667755544 45567888654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.32  E-value=0.077  Score=51.78  Aligned_cols=182  Identities=11%  Similarity=0.071  Sum_probs=90.4

Q ss_pred             cCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEe-eCCCcEEEEcCCCCC--Ccceeeee-ecCCCCcEEEEec
Q 019384           79 ADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITG-SWDKSLKCWDPRGAS--GQERTLVG-TYPQPERVYSLSL  154 (342)
Q Consensus        79 ~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg-s~D~~I~iWd~~~~~--~~~~~~~~-~~~~~~~v~~~s~  154 (342)
                      ....|+..++.......+......+..++|.+.++.|+-+ ...+.|+.+++....  ......+. ....+. -+.+++
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~-glavD~  462 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDW  462 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC-CEECCC
T ss_pred             CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc-eEEEEe
Confidence            3456666766665543333333456788999877666544 455789999886410  01111111 111111 234554


Q ss_pred             cCCeEE-EEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeE
Q 019384          155 VGNRLV-VATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH  233 (342)
Q Consensus       155 ~~~~~~-~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h  233 (342)
                      .+..|+ +-...+.|.++++...... ...... ......+++.|.+..++.+.....-.|+.++.... . .. .+.. 
T Consensus       463 ~~g~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~-~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~-~~-~l~~-  536 (699)
T 1n7d_A          463 IHSNIYWTDSVLGTVSVADTKGVKRK-TLFREQ-GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-D-IY-SLVT-  536 (699)
T ss_dssp             SSSBCEECCTTTSCEEEEBSSSCCEE-EECCCS-SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-C-CC-EESC-
T ss_pred             eCCcEEEEeccCCeEEEEecCCCceE-EEEeCC-CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-C-ee-EEEe-
Confidence            344444 3345567888887643211 111111 12345677777655555444322122333444211 1 11 0100 


Q ss_pred             EecCCCCceeeeeeEEEEcCCCC-eEEEecCCCeEEEEeCCC
Q 019384          234 RKSEAGRDIVYPVNAIAFHPIYG-TFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       234 ~~~~~~~~~~~~v~~v~~sp~~~-~l~sgs~Dg~I~iWd~~~  274 (342)
                             ......+.|+++|+++ ++++-+..+.|.+++...
T Consensus       537 -------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          537 -------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             -------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             -------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence                   0011256799998755 556667778999999864

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.99  E-value=0.85  Score=40.33  Aligned_cols=59  Identities=20%  Similarity=0.190  Sum_probs=39.6

Q ss_pred             eeeEEEEcCCCCeEEEec-----------------CCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          245 PVNAIAFHPIYGTFATGG-----------------CDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       245 ~v~~v~~sp~~~~l~sgs-----------------~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      ..+.+++.++|.++++..                 ..|.|+.+|...   +..+...-..-+.++|||||+.|..+.+.
T Consensus       166 ~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~---~~~~~~~l~~pNGia~spDg~~lYvadt~  241 (355)
T 3sre_A          166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND---VRVVAEGFDFANGINISPDGKYVYIAELL  241 (355)
T ss_dssp             SEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC---CEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             CCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe---EEEeecCCcccCcceECCCCCEEEEEeCC
Confidence            478899999999888865                 135666666532   11111112345999999999988877753

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=94.96  E-value=1.4  Score=36.94  Aligned_cols=189  Identities=14%  Similarity=0.084  Sum_probs=101.2

Q ss_pred             CCeEEEEEcCCCCeEEE-EeCCCcEEEEECCCceeeeeeec--CCceEEEEEeCCCCeEEEe-cCCcEEEEEeccCce--
Q 019384           20 DGISNLRFSNHSDHLLV-SSWDKSVRLYDASANVLRGEFMH--GGPVLDCCFHDDSSGFSAS-ADHTVRRLVFSHGKE--   93 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s-~s~Dgti~vwd~~~~~~~~~~~h--~~~V~~~~~~~~~~~~s~s-~D~~i~~w~~~~~~~--   93 (342)
                      +.+..|+|+|+++.|.+ ...++.|...|.. +++.....-  ....-++++..++.++.+. .++.+.++.+.....  
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~  105 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK  105 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence            46999999998776654 6677888888888 554443322  2456778887666664443 445666666544331  


Q ss_pred             --ee--c----ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCC-CCcceeeeee-------cCCCCcEEEEeccCC
Q 019384           94 --DI--L----GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA-SGQERTLVGT-------YPQPERVYSLSLVGN  157 (342)
Q Consensus        94 --~~--~----~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~-~~~~~~~~~~-------~~~~~~v~~~s~~~~  157 (342)
                        ..  +    .........++|+|+++.|+++.......+|..+.. ..........       .......+++.+..+
T Consensus       106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg  185 (255)
T 3qqz_A          106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKN  185 (255)
T ss_dssp             EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTT
T ss_pred             eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCC
Confidence              11  1    123445789999999888877665554455543210 0000111110       000112233433333


Q ss_pred             eE-EEEEcCCeEEEEeCCCCCCccccccccc------ceeeEEEEEeeCCceEEEEccCC
Q 019384          158 RL-VVATAGRHVNVYDLRNMSQPEQRRESSL------KYQTRCVRCYPNGTGYALSSVEG  210 (342)
Q Consensus       158 ~~-~~~s~d~~v~iwd~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~s~~~  210 (342)
                      .+ +....++.+..+|...............      -.+...+++.++|+.+++ +.-+
T Consensus       186 ~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n  244 (255)
T 3qqz_A          186 TLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPN  244 (255)
T ss_dssp             EEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTT
T ss_pred             eEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCc
Confidence            44 4444446677788654211111111110      125688999999975444 4443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=94.96  E-value=1.7  Score=37.90  Aligned_cols=150  Identities=7%  Similarity=0.070  Sum_probs=91.5

Q ss_pred             EEEEEcCCCCeEEEEe-CCCcEEEEECCCceeee-eeec-----C--CceEEEEE---eCCCCeEEEec-----------
Q 019384           23 SNLRFSNHSDHLLVSS-WDKSVRLYDASANVLRG-EFMH-----G--GPVLDCCF---HDDSSGFSASA-----------   79 (342)
Q Consensus        23 ~~l~fs~~~~~l~s~s-~Dgti~vwd~~~~~~~~-~~~h-----~--~~V~~~~~---~~~~~~~s~s~-----------   79 (342)
                      -+++|++...+|..++ +.++|..||...+.... .+..     .  ..+.++.|   .++++++.+..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            4678987555555555 89999999998553222 2211     1  13578888   35666655433           


Q ss_pred             ---CCcEEEEEec---cCcee---ecccC----------C-cceeEEEEeCCCCEEEEeeCC-CcEEEEcCCCCCCccee
Q 019384           80 ---DHTVRRLVFS---HGKED---ILGKH----------D-APVRCIEYSYAAGQVITGSWD-KSLKCWDPRGASGQERT  138 (342)
Q Consensus        80 ---D~~i~~w~~~---~~~~~---~~~~h----------~-~~V~~~~~~~~~~~l~sgs~D-~~I~iWd~~~~~~~~~~  138 (342)
                         +..+..+|+.   +++..   -+...          . .....++..++|+.-++++.- +.|...+.... .  ..
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~--~~  172 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-T--VS  172 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-C--EE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-E--Ee
Confidence               4568888988   55532   11111          1 247789999999888888888 87777776421 1  11


Q ss_pred             eee-ecC-CC----CcEEEEeccCCeEEEEEcCCeEEEEeCCC
Q 019384          139 LVG-TYP-QP----ERVYSLSLVGNRLVVATAGRHVNVYDLRN  175 (342)
Q Consensus       139 ~~~-~~~-~~----~~v~~~s~~~~~~~~~s~d~~v~iwd~~~  175 (342)
                      .+. ... ..    -.-+.+.++++.+++...++.+..+|+..
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            111 110 00    11234566677788776688899999874

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.81  E-value=2.9  Score=39.92  Aligned_cols=220  Identities=10%  Similarity=0.010  Sum_probs=111.0

Q ss_pred             CCCcEEEEECCCce--eeeeeecCCceEEEEEeC-CCCeEEE-ecCCcEEEEEeccCc--eeecccCCcceeEEEEeCCC
Q 019384           39 WDKSVRLYDASANV--LRGEFMHGGPVLDCCFHD-DSSGFSA-SADHTVRRLVFSHGK--EDILGKHDAPVRCIEYSYAA  112 (342)
Q Consensus        39 ~Dgti~vwd~~~~~--~~~~~~h~~~V~~~~~~~-~~~~~s~-s~D~~i~~w~~~~~~--~~~~~~h~~~V~~~~~~~~~  112 (342)
                      ..+.|++.|+....  .......-+.+.+++|.+ ++.++-+ ...+.|..+++....  ...+..--.....+++.+.+
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~   95 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   95 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence            46678888887542  222223345677899985 5555533 345678778776543  22233323567899999866


Q ss_pred             CEE-EEeeCCCcEEEEcCCCCCCcceeee-eecCCCCcEEEEeccCCeEEEEEc--CCeEEEEeCCCCCCcccccccccc
Q 019384          113 GQV-ITGSWDKSLKCWDPRGASGQERTLV-GTYPQPERVYSLSLVGNRLVVATA--GRHVNVYDLRNMSQPEQRRESSLK  188 (342)
Q Consensus       113 ~~l-~sgs~D~~I~iWd~~~~~~~~~~~~-~~~~~~~~v~~~s~~~~~~~~~s~--d~~v~iwd~~~~~~~~~~~~~~~~  188 (342)
                      +.| .+-...+.|.+.+++....  .... .....+. -+.++.....+.....  ...|...++...... ......+ 
T Consensus        96 ~~ly~~d~~~~~I~v~~~dG~~~--~~l~~~~l~~P~-~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~-~l~~~~~-  170 (619)
T 3s94_A           96 EKLYWTDSETNRIEVSNLDGSLR--KVLFWQELDQPR-AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-IIINSEI-  170 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSC--EEEECSSCSCCC-CEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSSC-
T ss_pred             CEEEEEeCCCCEEEEEECCCCCE--EEEEeCCCCCCc-eEEEecCCCeEEEeccCCCCEEEEEECCCCceE-EEEeCCC-
Confidence            655 4556678999999864221  1222 1122222 2345544444444432  245666666532111 1111111 


Q ss_pred             eeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeE
Q 019384          189 YQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFV  267 (342)
Q Consensus       189 ~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I  267 (342)
                      ...+.+++.++++.+..+. ..+.  |+.+|..... .+.. +...        ..+ ...|++..+ ..+++-...+.|
T Consensus       171 ~~P~Glald~~~~~LY~aD~~~~~--I~~~~~dG~~-~~~~-~~~~--------~~~-P~gi~~~~~-~ly~td~~~~~V  236 (619)
T 3s94_A          171 YWPNGLTLDYEEQKLYWADAKLNF--IHKSNLDGTN-RQAV-VKGS--------LPH-PFALTLFED-ILYWTDWSTHSI  236 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTCC--EEEESSSCCE-EC-------------------CCCEEESSS-EEEEECTTTCSE
T ss_pred             CCCcEEEEEccCCEEEEEeCCCCe--EEEecCCCCc-cEEE-EeCC--------CCC-ceEEEEeCC-EEEEecCCCCEE
Confidence            2467788888766555553 3333  4456653221 1111 1100        011 235677655 566676777889


Q ss_pred             EEEeCCCcee
Q 019384          268 NVWDGNNKKR  277 (342)
Q Consensus       268 ~iWd~~~~~~  277 (342)
                      ...|..+++.
T Consensus       237 ~~~d~~tg~~  246 (619)
T 3s94_A          237 LACNKYTGEG  246 (619)
T ss_dssp             EEEESSSCCC
T ss_pred             EEEECCCCcc
Confidence            9888766543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.58  E-value=1.9  Score=36.63  Aligned_cols=78  Identities=14%  Similarity=0.113  Sum_probs=44.7

Q ss_pred             CCCeEEEecCC-----CeEEEEeCCCce--eeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384          254 IYGTFATGGCD-----GFVNVWDGNNKK--RLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       254 ~~~~l~sgs~D-----g~I~iWd~~~~~--~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                      ++.+++.|+.+     ..+.+||.++.+  .+..+...... .++ ..-++++++.|+....      ...+.+.+|+.+
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~-~~~~~~i~v~GG~~~~------~~~~~v~~yd~~  275 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGV-CAVNGLLYVVGGDDGS------CNLASVEYYNPT  275 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEE-EEETTEEEEECCBCSS------SBCCCEEEEETT
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeE-EEECCEEEEECCcCCC------cccccEEEEcCC
Confidence            56777888764     368999988653  22222211111 122 2237787777765431      123568899888


Q ss_pred             CCccccCCCCCCC
Q 019384          327 EIEVKPKPKAYPN  339 (342)
Q Consensus       327 ~~~~~~~~~~~~~  339 (342)
                      ...|..-+...|.
T Consensus       276 ~~~W~~~~~~~~~  288 (302)
T 2xn4_A          276 TDKWTVVSSCMST  288 (302)
T ss_dssp             TTEEEECSSCCSS
T ss_pred             CCeEEECCcccCc
Confidence            7777765533343

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.54  E-value=2.3  Score=37.47  Aligned_cols=236  Identities=8%  Similarity=-0.031  Sum_probs=112.9

Q ss_pred             CceEEEEEeCCCCeEEEecCCcEEEEEeccCceeec------ccCCcceeEEEEeCC---CCEEEEeeC----C----Cc
Q 019384           61 GPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDIL------GKHDAPVRCIEYSYA---AGQVITGSW----D----KS  123 (342)
Q Consensus        61 ~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~------~~h~~~V~~~~~~~~---~~~l~sgs~----D----~~  123 (342)
                      ....+++|.+++.++.+..++.|++++. .+. ..+      .........++++|+   +..|+.+..    +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            3567889988888888887888887753 333 211      112345788999997   555544332    3    56


Q ss_pred             EEEEcCCCCCCc---ceeeeeec----CCCCcEEEEeccCCeEEEEEcC--------------CeEEEEeCCCCCCcc--
Q 019384          124 LKCWDPRGASGQ---ERTLVGTY----PQPERVYSLSLVGNRLVVATAG--------------RHVNVYDLRNMSQPE--  180 (342)
Q Consensus       124 I~iWd~~~~~~~---~~~~~~~~----~~~~~v~~~s~~~~~~~~~s~d--------------~~v~iwd~~~~~~~~--  180 (342)
                      |..|+.......   ....+...    .+...-+.+..++...+ +..+              +.|..+|... +.+.  
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyv-t~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~n  184 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYI-TTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADN  184 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEE-ECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEE-EECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCC
Confidence            777776532100   11111111    12223345666665333 3222              3455555432 1100  


Q ss_pred             -----cccccccceeeEEEEEee-CCceEEEEccCCe-EEEEEeechhhhhcccceee-e-E--EecCCC---C-ceeee
Q 019384          181 -----QRRESSLKYQTRCVRCYP-NGTGYALSSVEGR-VAMEFFDLSEASQAKKYAFK-C-H--RKSEAG---R-DIVYP  245 (342)
Q Consensus       181 -----~~~~~~~~~~~~~v~~~~-~~~~~~~~s~~~~-~~i~~~d~~~~~~~~~~~~~-~-h--~~~~~~---~-~~~~~  245 (342)
                           ......+ .....+++.| ++..+++-..... -.+.+...  .. ..-|... . .  ......   . .....
T Consensus       185 pf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~--G~-nyGwp~~~g~~~~~~~~~p~~~~~~~~~a  260 (354)
T 3a9g_A          185 PFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILK--GG-NYGWPLATGKAGRGEFVDPVIDTGSETWA  260 (354)
T ss_dssp             SSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECT--TC-BCCTTTCCSCCCCTTSCCCSEECTTCCCC
T ss_pred             CCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecC--CC-cCCCCcccCCCCCCCCcCCEeecCCCCcC
Confidence                 0000011 1244677888 4554433322211 11111211  00 0000000 0 0  000000   0 00113


Q ss_pred             eeEEEEc-------CCCCeEEEecCCCeEEEEeCCCc-eee--ec-cCCCCcceEEEEECCCCCEEEEEE
Q 019384          246 VNAIAFH-------PIYGTFATGGCDGFVNVWDGNNK-KRL--YQ-YSKYPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       246 v~~v~~s-------p~~~~l~sgs~Dg~I~iWd~~~~-~~~--~~-~~~~~~~V~~v~~spdg~~las~s  304 (342)
                      ...++|.       .+|.++++.-..+.|...+.+.. +..  .. +.+...++.++++.|||.++++..
T Consensus       261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            5667773       45667777777778888887743 221  22 223345789999999998777654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.22  E-value=2.2  Score=36.07  Aligned_cols=71  Identities=15%  Similarity=0.059  Sum_probs=39.2

Q ss_pred             CCCeEEEecCC-----CeEEEEeCCCce--eeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384          254 IYGTFATGGCD-----GFVNVWDGNNKK--RLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       254 ~~~~l~sgs~D-----g~I~iWd~~~~~--~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                      ++.+++.|+.+     ..+.+||.++.+  .+..+........++  .-++++++.|+.....      ..+.+.+++.+
T Consensus       206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~------~~~~v~~yd~~  277 (301)
T 2vpj_A          206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT--VLRGRLYAIAGYDGNS------LLSSIECYDPI  277 (301)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSS------BEEEEEEEETT
T ss_pred             CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE--EECCEEEEEcCcCCCc------ccccEEEEcCC
Confidence            56777888764     468999988754  222222211111222  2377877777643311      12357778776


Q ss_pred             CCcccc
Q 019384          327 EIEVKP  332 (342)
Q Consensus       327 ~~~~~~  332 (342)
                      ...|+.
T Consensus       278 ~~~W~~  283 (301)
T 2vpj_A          278 IDSWEV  283 (301)
T ss_dssp             TTEEEE
T ss_pred             CCeEEE
Confidence            666654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.05  E-value=4.3  Score=38.75  Aligned_cols=205  Identities=11%  Similarity=0.077  Sum_probs=97.5

Q ss_pred             ecCCcEEEEEeccCc--eeecccCCcceeEEEEeCCCCEEE-EeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec
Q 019384           78 SADHTVRRLVFSHGK--EDILGKHDAPVRCIEYSYAAGQVI-TGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL  154 (342)
Q Consensus        78 s~D~~i~~w~~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~-sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~  154 (342)
                      .....|+..++....  ...+.........++|++.++.|+ +=...+.|..+++..... ....+........-+++++
T Consensus        15 ~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~-~~~v~~~~~~~P~GlAvD~   93 (619)
T 3s94_A           15 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-VQNVVVSGLLSPDGLACDW   93 (619)
T ss_dssp             ECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CEEEECSSCSCEEEEEEET
T ss_pred             eccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc-eEEEEeCCCCCcCeEEEEe
Confidence            345667777776542  222333345578899998776665 444457898888764311 1111211101122344555


Q ss_pred             cCCeEEEE-EcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeE
Q 019384          155 VGNRLVVA-TAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH  233 (342)
Q Consensus       155 ~~~~~~~~-s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h  233 (342)
                      .++.++.+ ...+.|.+.++........ ....+ .....+++.|.+..+........-.|+..+.... . .. .+.. 
T Consensus        94 ~~~~ly~~d~~~~~I~v~~~dG~~~~~l-~~~~l-~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~-~-~~-~l~~-  167 (619)
T 3s94_A           94 LGEKLYWTDSETNRIEVSNLDGSLRKVL-FWQEL-DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-S-RF-IIIN-  167 (619)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEE-ECSSC-SCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC-S-CE-EEEC-
T ss_pred             cCCEEEEEeCCCCEEEEEECCCCCEEEE-EeCCC-CCCceEEEecCCCeEEEeccCCCCEEEEEECCCC-c-eE-EEEe-
Confidence            44555444 5557899999865322111 11111 2356777888755555544322223333443211 1 11 1100 


Q ss_pred             EecCCCCceeeeeeEEEEcCCCCe-EEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCC
Q 019384          234 RKSEAGRDIVYPVNAIAFHPIYGT-FATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRD  296 (342)
Q Consensus       234 ~~~~~~~~~~~~v~~v~~sp~~~~-l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spd  296 (342)
                             ......+.++++++++. +++=...+.|...|.+.........+....-.+|++..|
T Consensus       168 -------~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~  224 (619)
T 3s94_A          168 -------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED  224 (619)
T ss_dssp             -------SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS
T ss_pred             -------CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC
Confidence                   00113578999987555 455566778999988754332222211222356777666

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.38  E-value=3.9  Score=36.05  Aligned_cols=58  Identities=16%  Similarity=0.121  Sum_probs=40.4

Q ss_pred             eeEEEEcCCCCeEE-EecCCCeEEEEeCCC-cee--eeccCCCCcceEEEEECC-CCCEEEEEE
Q 019384          246 VNAIAFHPIYGTFA-TGGCDGFVNVWDGNN-KKR--LYQYSKYPTSIAALSFSR-DGRLLAVAS  304 (342)
Q Consensus       246 v~~v~~sp~~~~l~-sgs~Dg~I~iWd~~~-~~~--~~~~~~~~~~V~~v~~sp-dg~~las~s  304 (342)
                      .+.++|+||++.|. +-+..+.|+.|++.. ++.  .+.+ ......-.+++.+ +|.+.+++.
T Consensus       223 pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          223 ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred             cCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec
Confidence            57899999998664 455678999999763 322  1223 2245678899999 599877554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.32  E-value=4.5  Score=36.58  Aligned_cols=102  Identities=9%  Similarity=0.110  Sum_probs=67.9

Q ss_pred             CCCCeEEEEeCCCcEEEEECCCceeeeeeec-----CCceEEEEEeCCCCeEEEecCCcEEEEEeccCc---e-------
Q 019384           29 NHSDHLLVSSWDKSVRLYDASANVLRGEFMH-----GGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK---E-------   93 (342)
Q Consensus        29 ~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h-----~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~---~-------   93 (342)
                      .++..|+.+ .++.||.=++..+.-......     -+.|..+..++++.+++-..+..|.+..+..+.   .       
T Consensus        30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence            345555433 457777777763221111111     125677888999999988889999999887332   1       


Q ss_pred             ---eec--cc----CCcceeEEEEeCC---CCEEEEeeCCCcEEEEcCCC
Q 019384           94 ---DIL--GK----HDAPVRCIEYSYA---AGQVITGSWDKSLKCWDPRG  131 (342)
Q Consensus        94 ---~~~--~~----h~~~V~~~~~~~~---~~~l~sgs~D~~I~iWd~~~  131 (342)
                         +.+  ..    ...+|..+.|+|-   +..|++-..|++||+||+..
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence               011  11    2467999999994   45788889999999999975

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.16  E-value=3.5  Score=34.84  Aligned_cols=228  Identities=14%  Similarity=0.108  Sum_probs=100.4

Q ss_pred             CCCeEEEEe-CC-----CcEEEEECCCceeeeeeecCCc--eEEEEEeCCCCeEEEecC-----CcEEEEEeccCc---e
Q 019384           30 HSDHLLVSS-WD-----KSVRLYDASANVLRGEFMHGGP--VLDCCFHDDSSGFSASAD-----HTVRRLVFSHGK---E   93 (342)
Q Consensus        30 ~~~~l~s~s-~D-----gti~vwd~~~~~~~~~~~h~~~--V~~~~~~~~~~~~s~s~D-----~~i~~w~~~~~~---~   93 (342)
                      ++..++.|+ .+     ..+.+||..+.+......-..+  -.+++...+...+.|+.+     ..+..+|..+..   .
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W   93 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW   93 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence            445566666 33     4788899877654332111111  112222233333455544     357788877665   3


Q ss_pred             eeccc---CCcceeEEEEeCCCCEEEEeeCCC-----cEEEEcCCCCCCcceeeeeecCCCC-cEEEEeccCCeEEEEEc
Q 019384           94 DILGK---HDAPVRCIEYSYAAGQVITGSWDK-----SLKCWDPRGASGQERTLVGTYPQPE-RVYSLSLVGNRLVVATA  164 (342)
Q Consensus        94 ~~~~~---h~~~V~~~~~~~~~~~l~sgs~D~-----~I~iWd~~~~~~~~~~~~~~~~~~~-~v~~~s~~~~~~~~~s~  164 (342)
                      ..+..   ....- +++.. ++..++.|+.++     .+.++|+.+..=   ..+....... .......++..++.++.
T Consensus        94 ~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~r~~~~~~~~~~~iyv~GG~  168 (301)
T 2vpj_A           94 YSVAPMNVRRGLA-GATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQW---SMLGDMQTAREGAGLVVASGVIYCLGGY  168 (301)
T ss_dssp             EEECCCSSCCBSC-EEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEE---EEEEECSSCCBSCEEEEETTEEEEECCB
T ss_pred             EECCCCCCCccce-eEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeE---EECCCCCCCcccceEEEECCEEEEECCC
Confidence            32211   11111 12222 566667776543     577888764321   1111111111 11122234445555554


Q ss_pred             C-----CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCe---EEEEEeechhhhhcccceeeeEEec
Q 019384          165 G-----RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR---VAMEFFDLSEASQAKKYAFKCHRKS  236 (342)
Q Consensus       165 d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~---~~i~~~d~~~~~~~~~~~~~~h~~~  236 (342)
                      +     ..+..||..+..=..............++  .-++..++++..++.   ..++.||.........-.+..    
T Consensus       169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~----  242 (301)
T 2vpj_A          169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA--LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT----  242 (301)
T ss_dssp             CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS----
T ss_pred             CCCcccceEEEEeCCCCcEEeCCCCCcccccceEE--EECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC----
Confidence            3     35888898764211100000001111222  235566666655431   235668875432111100000    


Q ss_pred             CCCCceeeeeeEEEEcCCCCeEEEecCC-----CeEEEEeCCCc
Q 019384          237 EAGRDIVYPVNAIAFHPIYGTFATGGCD-----GFVNVWDGNNK  275 (342)
Q Consensus       237 ~~~~~~~~~v~~v~~sp~~~~l~sgs~D-----g~I~iWd~~~~  275 (342)
                        ..   ....++.+  ++..++.|+.+     ..|.+||.++.
T Consensus       243 --~r---~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          243 --PR---CYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             --CC---BSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             --cc---cceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence              00   01112222  56777777765     36788887764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.09  E-value=3.7  Score=34.95  Aligned_cols=72  Identities=13%  Similarity=0.140  Sum_probs=41.2

Q ss_pred             CCCeEEEecCC-----CeEEEEeCCCcee--eeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384          254 IYGTFATGGCD-----GFVNVWDGNNKKR--LYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       254 ~~~~l~sgs~D-----g~I~iWd~~~~~~--~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                      ++.+++.|+.+     ..+.+||.++.+=  +..+...... .+++. -++++++.|+...      ....+.+.+++.+
T Consensus       215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~i~v~GG~~~------~~~~~~v~~yd~~  286 (308)
T 1zgk_A          215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA-LGITV-HQGRIYVLGGYDG------HTFLDSVECYDPD  286 (308)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCS------SCBCCEEEEEETT
T ss_pred             CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc-eEEEE-ECCEEEEEcCcCC------CcccceEEEEcCC
Confidence            56777888765     4699999887532  2222211111 22222 3678777776433      1223478888887


Q ss_pred             CCccccC
Q 019384          327 EIEVKPK  333 (342)
Q Consensus       327 ~~~~~~~  333 (342)
                      ...|+.-
T Consensus       287 ~~~W~~~  293 (308)
T 1zgk_A          287 TDTWSEV  293 (308)
T ss_dssp             TTEEEEE
T ss_pred             CCEEeec
Confidence            6666544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.04  E-value=3.7  Score=34.81  Aligned_cols=98  Identities=9%  Similarity=0.050  Sum_probs=48.4

Q ss_pred             CeEEEEeCC--CcEEEEECCCceeeeeeecCCc--eEEEEEeCCCCeEEEecC----CcEEEEEeccCceeeccc---CC
Q 019384           32 DHLLVSSWD--KSVRLYDASANVLRGEFMHGGP--VLDCCFHDDSSGFSASAD----HTVRRLVFSHGKEDILGK---HD  100 (342)
Q Consensus        32 ~~l~s~s~D--gti~vwd~~~~~~~~~~~h~~~--V~~~~~~~~~~~~s~s~D----~~i~~w~~~~~~~~~~~~---h~  100 (342)
                      ..++.|+.+  ..+.+||..+.+......-..+  -.+++...+...+.|+.+    ..+..+|..+.....+..   ..
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r   92 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR   92 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc
Confidence            345566653  6788999887654332110000  012222233333455544    456677777665332211   11


Q ss_pred             cceeEEEEeCCCCEEEEeeCC------CcEEEEcCCC
Q 019384          101 APVRCIEYSYAAGQVITGSWD------KSLKCWDPRG  131 (342)
Q Consensus       101 ~~V~~~~~~~~~~~l~sgs~D------~~I~iWd~~~  131 (342)
                      ..-.++.+  ++..++.|+.+      ..+.+||+.+
T Consensus        93 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~  127 (306)
T 3ii7_A           93 DSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRT  127 (306)
T ss_dssp             BSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTT
T ss_pred             cceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCC
Confidence            11112222  56666777765      4578888764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=92.97  E-value=3.8  Score=34.74  Aligned_cols=226  Identities=13%  Similarity=0.084  Sum_probs=101.7

Q ss_pred             CcEEEEEeccCceeeccc---CCcceeEEEEeCCCCEEEEeeCC----CcEEEEcCCCCCCcceeeeeecCCCC-cEEEE
Q 019384           81 HTVRRLVFSHGKEDILGK---HDAPVRCIEYSYAAGQVITGSWD----KSLKCWDPRGASGQERTLVGTYPQPE-RVYSL  152 (342)
Q Consensus        81 ~~i~~w~~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~sgs~D----~~I~iWd~~~~~~~~~~~~~~~~~~~-~v~~~  152 (342)
                      ..+..+|..+.+...+..   ....-.++.  .++..++.|+.+    ..+.++|+.+..=   ..+....... .....
T Consensus        24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W---~~~~~~p~~r~~~~~~   98 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSW---YSKLGPPTPRDSLAAC   98 (306)
T ss_dssp             TSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEE---EEEECCSSCCBSCEEE
T ss_pred             ceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeE---EECCCCCccccceeEE
Confidence            467777777665332211   111111222  255666777765    5677888764321   1111111111 11122


Q ss_pred             eccCCeEEEEEcC------CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCC-------eEEEEEeec
Q 019384          153 SLVGNRLVVATAG------RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEG-------RVAMEFFDL  219 (342)
Q Consensus       153 s~~~~~~~~~s~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~-------~~~i~~~d~  219 (342)
                      ..++..++.++.+      ..+.+||..+..=...............+  .-++..++.+..++       ...++.||.
T Consensus        99 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~  176 (306)
T 3ii7_A           99 AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMV--EANGLIYVCGGSLGNNVSGRVLNSCEVYDP  176 (306)
T ss_dssp             EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCEESCTTTCEECCCEEEEET
T ss_pred             EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEE--EECCEEEEECCCCCCCCcccccceEEEeCC
Confidence            3344455555544      35888888764211000000001111222  23555566664321       223566777


Q ss_pred             hhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC-----CeEEEEeCCCce--eeeccCCCCcceEEEE
Q 019384          220 SEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD-----GFVNVWDGNNKK--RLYQYSKYPTSIAALS  292 (342)
Q Consensus       220 ~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D-----g~I~iWd~~~~~--~~~~~~~~~~~V~~v~  292 (342)
                      ........-.+..      ..   ..-.++.+  ++.+++.|+.+     ..+.+||..+.+  .+..+........++.
T Consensus       177 ~~~~W~~~~~~p~------~r---~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  245 (306)
T 3ii7_A          177 ATETWTELCPMIE------AR---KNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA  245 (306)
T ss_dssp             TTTEEEEECCCSS------CC---BSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred             CCCeEEECCCccc------hh---hcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence            5432111100000      00   00112222  56777777754     368899988653  2222222212223333


Q ss_pred             ECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccCCcccc
Q 019384          293 FSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEIEVKP  332 (342)
Q Consensus       293 ~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (342)
                      +  ++++++.|+.+..      ...+.+.+|+.+...|+.
T Consensus       246 ~--~~~i~v~GG~~~~------~~~~~~~~yd~~~~~W~~  277 (306)
T 3ii7_A          246 V--GSIVYVLAGFQGV------GRLGHILEYNTETDKWVA  277 (306)
T ss_dssp             E--TTEEEEEECBCSS------SBCCEEEEEETTTTEEEE
T ss_pred             E--CCEEEEEeCcCCC------eeeeeEEEEcCCCCeEEe
Confidence            3  7787777765431      123468888887666654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=92.50  E-value=11  Score=38.92  Aligned_cols=110  Identities=13%  Similarity=0.159  Sum_probs=58.3

Q ss_pred             ceEEEEEeCCCCeEEEecCCcEEEEEeccCceeec--ccCCcceeEEEEeCC------CCEEEEeeC-CCcEEEEcCCCC
Q 019384           62 PVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDIL--GKHDAPVRCIEYSYA------AGQVITGSW-DKSLKCWDPRGA  132 (342)
Q Consensus        62 ~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~--~~h~~~V~~~~~~~~------~~~l~sgs~-D~~I~iWd~~~~  132 (342)
                      .|..++..+ .+++.++ ++.+.++.++.+.....  ..-...|.|+++.+.      .+.++.|.+ |++++|+.+...
T Consensus       515 ~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l  592 (1158)
T 3ei3_A          515 NISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF  592 (1158)
T ss_dssp             CCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence            455555433 3444444 56677776665432111  112457999998763      357888987 999999998642


Q ss_pred             CCcceeeeeecCCCCcEEEEeccC-CeEEEEEcCCeEEEEeC
Q 019384          133 SGQERTLVGTYPQPERVYSLSLVG-NRLVVATAGRHVNVYDL  173 (342)
Q Consensus       133 ~~~~~~~~~~~~~~~~v~~~s~~~-~~~~~~s~d~~v~iwd~  173 (342)
                      .......+.....+..+.-..+.+ -++..+..||.+..+.+
T Consensus       593 ~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~  634 (1158)
T 3ei3_A          593 ELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGL  634 (1158)
T ss_dssp             CEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEE
T ss_pred             CeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEE
Confidence            221111111100111111112222 25777888888665544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.97  E-value=1.2  Score=36.56  Aligned_cols=101  Identities=6%  Similarity=-0.007  Sum_probs=59.4

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce------eeeeee---cCCceEEEEEeCCCCeEEEecCCcEEEEEecc
Q 019384           20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANV------LRGEFM---HGGPVLDCCFHDDSSGFSASADHTVRRLVFSH   90 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~------~~~~~~---h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~   90 (342)
                      +.+..++|+|+|.+.+.  .+|.+.-.+..+..      .-..++   -++ -.++.|.+++.++.. .|+.|..++-.+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav-~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV-SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE-ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe-CCCEEEEeCCCc
Confidence            47779999999987666  66654444443311      111111   111 346666678877766 779887776543


Q ss_pred             Ccee-------ecccCC-cceeEEEEeCCCCEEEEeeCCCcEEE
Q 019384           91 GKED-------ILGKHD-APVRCIEYSYAAGQVITGSWDKSLKC  126 (342)
Q Consensus        91 ~~~~-------~~~~h~-~~V~~~~~~~~~~~l~sgs~D~~I~i  126 (342)
                      ....       ++..+. ..+..|.|.|+|.+-+. . |+.+.-
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav-~-dg~lyr  158 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV-H-GQQFYK  158 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE-E-TTEEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEE-e-CCcEEe
Confidence            3211       121111 46799999999865544 4 777543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.66  E-value=0.56  Score=38.43  Aligned_cols=102  Identities=14%  Similarity=0.086  Sum_probs=58.0

Q ss_pred             eEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccccee-eeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEE
Q 019384          191 TRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAF-KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNV  269 (342)
Q Consensus       191 ~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~-~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~i  269 (342)
                      +..++++|++...++  .++.  ++-.+..+.. ...|.- ..+... .+..   ...++.|.|+|.++++  .||.|+-
T Consensus        43 ~~~laf~P~G~LYaV--~~G~--Ly~~~~~t~~-~~~W~~s~t~IG~-~Gw~---~F~a~~fD~~G~LYav--~dG~iyr  111 (236)
T 1tl2_A           43 FKFLFLSPGGELYGV--LNDK--IYKGTPPTHD-NDNWMGRAKKIGN-GGWN---QFQFLFFDPNGYLYAV--SKDKLYK  111 (236)
T ss_dssp             CSEEEECTTSCEEEE--ETTE--EEEESCCCST-TCCHHHHCEEEEC-SCGG---GCSEEEECTTSCEEEE--ETTEEEE
T ss_pred             ceeEEECCCccEEEE--eCCe--EEEECCCCCC-cccccccccEecc-cccc---cceEEEECCCCCEEEe--CCCEEEE
Confidence            457899998887666  4453  3344442211 111111 111100 0000   1468899999998888  6699988


Q ss_pred             EeCCCc--eee-e---cc-CCCCcceEEEEECCCCCEEEEE
Q 019384          270 WDGNNK--KRL-Y---QY-SKYPTSIAALSFSRDGRLLAVA  303 (342)
Q Consensus       270 Wd~~~~--~~~-~---~~-~~~~~~V~~v~~spdg~~las~  303 (342)
                      ++.-+.  ... .   .+ .+-=..+..|.|.|||.+.|+.
T Consensus       112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            875321  111 0   00 0011467999999999999888

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=91.31  E-value=16  Score=38.42  Aligned_cols=105  Identities=7%  Similarity=0.049  Sum_probs=64.1

Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc--eeecccC---
Q 019384           25 LRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK--EDILGKH---   99 (342)
Q Consensus        25 l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~--~~~~~~h---   99 (342)
                      .-.+|..+.||--. ..++.|||+.+...........+|.-..|..+..+.. -.+..|..|++....  ..++..|   
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~l-VT~~aVyHW~~~~~s~P~k~fdR~~~L  148 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL-VTDNAVYHWSMEGESQPVKMFDRHSSL  148 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEE-EcCCeEEEeccCCCCccHHHHhcchhc
Confidence            33456666666543 7899999997654444444456788888976655432 235678899885432  2344444   


Q ss_pred             -CcceeEEEEeCCCCEEEE-e------eCCCcEEEEcCCC
Q 019384          100 -DAPVRCIEYSYAAGQVIT-G------SWDKSLKCWDPRG  131 (342)
Q Consensus       100 -~~~V~~~~~~~~~~~l~s-g------s~D~~I~iWd~~~  131 (342)
                       ..+|..-..+++.+.++- |      .-.|.+.++..+.
T Consensus       149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er  188 (1630)
T 1xi4_A          149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  188 (1630)
T ss_pred             ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence             345666666777776542 2      2346788887653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=91.29  E-value=8.2  Score=34.92  Aligned_cols=143  Identities=18%  Similarity=0.175  Sum_probs=76.8

Q ss_pred             EeccCCeEEEEEcCCeEEEEeCCCCCCcccccccc--cce-eeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh-cc-
Q 019384          152 LSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESS--LKY-QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ-AK-  226 (342)
Q Consensus       152 ~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~-~~-  226 (342)
                      ++.++..+++ ..++.||.-++.... ..+....+  +.+ .+..+..+|+|..+++.+.. .+.  +..+..... .. 
T Consensus        28 ~~~n~t~i~~-a~~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~--Vv~LP~~~~~~~~  102 (452)
T 3pbp_A           28 SSQNGTRIVF-IQDNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIF--VMEVPWGYSNVED  102 (452)
T ss_dssp             EETTTTEEEE-EETTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEE--EEECCTTCSCCCC
T ss_pred             EEcCCCEEEE-EECCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEecCC-eEE--EEEecCccccCcc
Confidence            4444555443 445778877776432 22222111  223 45567889999988877544 333  344431110 00 


Q ss_pred             -----cceeeeEEecCCCCceeeeeeEEEEcCCC---CeEEEecCCCeEEEEeCCCce--eeecc---------CCCCcc
Q 019384          227 -----KYAFKCHRKSEAGRDIVYPVNAIAFHPIY---GTFATGGCDGFVNVWDGNNKK--RLYQY---------SKYPTS  287 (342)
Q Consensus       227 -----~~~~~~h~~~~~~~~~~~~v~~v~~sp~~---~~l~sgs~Dg~I~iWd~~~~~--~~~~~---------~~~~~~  287 (342)
                           ....+...-.........+|..+.|||-+   ..|++=..|++||+||+....  .. .+         ......
T Consensus       103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~e  181 (452)
T 3pbp_A          103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVND  181 (452)
T ss_dssp             HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCC
T ss_pred             cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccce
Confidence                 00000000000000012368999999974   578888899999999987521  11 12         122357


Q ss_pred             eEEEEECCCCCEE
Q 019384          288 IAALSFSRDGRLL  300 (342)
Q Consensus       288 V~~v~~spdg~~l  300 (342)
                      |.+++|+++|-.|
T Consensus       182 v~S~~Fg~~~lTL  194 (452)
T 3pbp_A          182 ITDLEFSKDGLTL  194 (452)
T ss_dssp             EEEEEECTTSSCE
T ss_pred             EEEEEEcCCCcEE
Confidence            8999999987633

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=90.87  E-value=6.8  Score=33.24  Aligned_cols=227  Identities=12%  Similarity=0.044  Sum_probs=98.1

Q ss_pred             CCCeEEEEeCC----CcEEEEECCCceeeeeeecCCc--eEEEEEeCCCCe-EEEec----C-----CcEEEEEeccCce
Q 019384           30 HSDHLLVSSWD----KSVRLYDASANVLRGEFMHGGP--VLDCCFHDDSSG-FSASA----D-----HTVRRLVFSHGKE   93 (342)
Q Consensus        30 ~~~~l~s~s~D----gti~vwd~~~~~~~~~~~h~~~--V~~~~~~~~~~~-~s~s~----D-----~~i~~w~~~~~~~   93 (342)
                      ++..++.|+.+    ..+.+||..+.+......-..+  -.+++.. ++.+ +.|+.    +     ..+..+|..+...
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W  102 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW  102 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence            45566666642    4688999877654332110000  0122222 3344 34444    2     3567777776653


Q ss_pred             eecc---cCCcceeEEEEeCCCCEEEEeeCC-----CcEEEEcCCCCCCcceeeeeecCCCC-cEEEEeccCCeEEEEEc
Q 019384           94 DILG---KHDAPVRCIEYSYAAGQVITGSWD-----KSLKCWDPRGASGQERTLVGTYPQPE-RVYSLSLVGNRLVVATA  164 (342)
Q Consensus        94 ~~~~---~h~~~V~~~~~~~~~~~l~sgs~D-----~~I~iWd~~~~~~~~~~~~~~~~~~~-~v~~~s~~~~~~~~~s~  164 (342)
                      ..+.   .....-.++.+  +++.++.|+.+     ..+.+||+.+..=   ..+....... .......++..++.++.
T Consensus       103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~r~~~~~~~~~~~iyv~GG~  177 (308)
T 1zgk_A          103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW---HLVAPMLTRRIGVGVAVLNRLLYAVGGF  177 (308)
T ss_dssp             EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE---EECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred             eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE---eECCCCCccccceEEEEECCEEEEEeCC
Confidence            3221   11111112222  56666666644     3577888764310   1111111111 11122234444555554


Q ss_pred             C-----CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCe---EEEEEeechhhhhcccceeeeEEec
Q 019384          165 G-----RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR---VAMEFFDLSEASQAKKYAFKCHRKS  236 (342)
Q Consensus       165 d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~---~~i~~~d~~~~~~~~~~~~~~h~~~  236 (342)
                      +     ..+.+||..+..=...............+.  -++..+++++.++.   ..++.||.....-.....+..    
T Consensus       178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~----  251 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH----  251 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS----
T ss_pred             CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC----
Confidence            3     358888886542110000000111112222  25666666654321   235678875432211111110    


Q ss_pred             CCCCceeeeeeEEEEcCCCCeEEEecCC-----CeEEEEeCCCc
Q 019384          237 EAGRDIVYPVNAIAFHPIYGTFATGGCD-----GFVNVWDGNNK  275 (342)
Q Consensus       237 ~~~~~~~~~v~~v~~sp~~~~l~sgs~D-----g~I~iWd~~~~  275 (342)
                        ..   ....++.+  ++++++.|+.+     ..+.+||.++.
T Consensus       252 --~r---~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          252 --RR---SALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             --CC---BSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             --Cc---cceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence              00   00112222  56777777754     35777887754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=90.49  E-value=12  Score=35.63  Aligned_cols=216  Identities=6%  Similarity=-0.042  Sum_probs=116.9

Q ss_pred             CCCcEEEEECCCceeeeee--ecCCceEEEEEeC-CCCeE-EEecCCcEEEEEeccCceee-cccCCcceeEEEEeCCCC
Q 019384           39 WDKSVRLYDASANVLRGEF--MHGGPVLDCCFHD-DSSGF-SASADHTVRRLVFSHGKEDI-LGKHDAPVRCIEYSYAAG  113 (342)
Q Consensus        39 ~Dgti~vwd~~~~~~~~~~--~h~~~V~~~~~~~-~~~~~-s~s~D~~i~~w~~~~~~~~~-~~~h~~~V~~~~~~~~~~  113 (342)
                      ..+.|+..|+.+.......  ..-..+.+++|.+ ++.++ +-..++.|..++++...... +..-......+++.+.++
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~   92 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK   92 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence            5677899998764322221  2234678999985 45555 44566788888876654332 222224567899988766


Q ss_pred             EE-EEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc--CCeEEEEEc--CCeEEEEeCCCCCCcccccccccc
Q 019384          114 QV-ITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV--GNRLVVATA--GRHVNVYDLRNMSQPEQRRESSLK  188 (342)
Q Consensus       114 ~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~--d~~v~iwd~~~~~~~~~~~~~~~~  188 (342)
                      .| .+-...+.|.+.+++...   ...+.. ........+..+  ...+.....  ...|...++........  ... -
T Consensus        93 ~LY~tD~~~~~I~v~~~dG~~---~~~l~~-~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l--~~~-~  165 (628)
T 4a0p_A           93 NLYWADTGTNRIEVSKLDGQH---RQVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL--VPN-V  165 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSTT---CEEEEC-SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE--ECS-C
T ss_pred             EEEEEECCCCEEEEEecCCCc---EEEEEe-CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE--ECC-C
Confidence            66 455556789999886422   122211 111223344444  334443332  35677777754322111  111 1


Q ss_pred             eeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeE
Q 019384          189 YQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFV  267 (342)
Q Consensus       189 ~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I  267 (342)
                      ...+.+++.++++.+..+. ..+.  |+.+|.....  ++ .+..  .      ..+| ..+++.. +..+++-...+.|
T Consensus       166 ~~P~GlalD~~~~~LY~aD~~~~~--I~~~d~dG~~--~~-v~~~--~------l~~P-~glav~~-~~ly~tD~~~~~I  230 (628)
T 4a0p_A          166 GRANGLTIDYAKRRLYWTDLDTNL--IESSNMLGLN--RE-VIAD--D------LPHP-FGLTQYQ-DYIYWTDWSRRSI  230 (628)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTE--EEEEETTSCS--CE-EEEE--C------CSCE-EEEEEET-TEEEEEETTTTEE
T ss_pred             CCcceEEEccccCEEEEEECCCCE--EEEEcCCCCc--eE-Eeec--c------CCCc-eEEEEEC-CEEEEecCCCCEE
Confidence            2467888888766665554 4444  4556664321  11 1111  0      0112 3566655 5666777778899


Q ss_pred             EEEeCCCce
Q 019384          268 NVWDGNNKK  276 (342)
Q Consensus       268 ~iWd~~~~~  276 (342)
                      ...|..+++
T Consensus       231 ~~~dk~tg~  239 (628)
T 4a0p_A          231 ERANKTSGQ  239 (628)
T ss_dssp             EEEETTTCC
T ss_pred             EEEECCCCC
Confidence            988865543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=88.55  E-value=14  Score=33.60  Aligned_cols=21  Identities=24%  Similarity=0.407  Sum_probs=15.7

Q ss_pred             CCCcceEEEEECCCCCEEEEEE
Q 019384          283 KYPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       283 ~~~~~V~~v~~spdg~~las~s  304 (342)
                      +|. ..+.++|.|+|++.++--
T Consensus       226 G~R-Np~gla~dp~G~L~~~d~  246 (454)
T 1cru_A          226 GHR-NPQGLAFTPNGKLLQSEQ  246 (454)
T ss_dssp             CCS-EEEEEEECTTSCEEEEEE
T ss_pred             CCC-CcceEEECCCCCEEEEec
Confidence            554 468999999999776543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=88.49  E-value=12  Score=32.71  Aligned_cols=57  Identities=11%  Similarity=0.025  Sum_probs=34.5

Q ss_pred             eeEEEEcCCCCeEEEecC-------------CCeEEEEeCCCce------------eeecc-CCCCcceEEEEECC-CCC
Q 019384          246 VNAIAFHPIYGTFATGGC-------------DGFVNVWDGNNKK------------RLYQY-SKYPTSIAALSFSR-DGR  298 (342)
Q Consensus       246 v~~v~~sp~~~~l~sgs~-------------Dg~I~iWd~~~~~------------~~~~~-~~~~~~V~~v~~sp-dg~  298 (342)
                      -..++|.|||.++++-+.             .|.|.-++.+..-            ....+ .++. ..+.++|.| +|+
T Consensus       132 ~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~  210 (353)
T 2g8s_A          132 GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNA  210 (353)
T ss_dssp             CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTE
T ss_pred             CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCC
Confidence            457999999976666433             2467666654310            11111 2443 468999999 777


Q ss_pred             EEEEE
Q 019384          299 LLAVA  303 (342)
Q Consensus       299 ~las~  303 (342)
                      ++++=
T Consensus       211 l~~~d  215 (353)
T 2g8s_A          211 LWLNE  215 (353)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=88.25  E-value=13  Score=32.64  Aligned_cols=98  Identities=13%  Similarity=0.129  Sum_probs=60.3

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee--e-----ecCCceEEEEEeCC----CCeEEE---ecCCcEEE
Q 019384           20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE--F-----MHGGPVLDCCFHDD----SSGFSA---SADHTVRR   85 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~--~-----~h~~~V~~~~~~~~----~~~~s~---s~D~~i~~   85 (342)
                      ..-+.++|.|||+++++--..|+|++++..++.....  .     .-.+....++|+|+    +.++..   ..++.|..
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            4668999999999888766689999998765442211  1     12456789999874    555432   23445555


Q ss_pred             EEeccC-----c----eeecc------cCCcceeEEEEeCCCCEEEEee
Q 019384           86 LVFSHG-----K----EDILG------KHDAPVRCIEYSYAAGQVITGS  119 (342)
Q Consensus        86 w~~~~~-----~----~~~~~------~h~~~V~~~~~~~~~~~l~sgs  119 (342)
                      +.+...     .    +.++.      .|  .-..|+|.||+.+.++.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTSCEEEECB
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCCCEEEEEC
Confidence            555431     1    11111      23  235688899887666654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=88.25  E-value=11  Score=31.78  Aligned_cols=226  Identities=14%  Similarity=0.075  Sum_probs=98.0

Q ss_pred             CeEEEEeCC----CcEEEEECCCceeeeeeecCCc-e-EEEEEeCCCCe-EEEecC-----CcEEEEEeccCceeeccc-
Q 019384           32 DHLLVSSWD----KSVRLYDASANVLRGEFMHGGP-V-LDCCFHDDSSG-FSASAD-----HTVRRLVFSHGKEDILGK-   98 (342)
Q Consensus        32 ~~l~s~s~D----gti~vwd~~~~~~~~~~~h~~~-V-~~~~~~~~~~~-~s~s~D-----~~i~~w~~~~~~~~~~~~-   98 (342)
                      ..++.|+.+    ..+.+||..+...........+ . .+++.. ++.+ +.|+.+     ..+..+|..+.....+.. 
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~   95 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM   95 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence            455566654    4678889877654332111111 1 122222 3444 455544     246777777665332211 


Q ss_pred             --CCcceeEEEEeCCCCEEEEeeCCC-----cEEEEcCCCCCCcceeeeeecCCCCc-EEEEeccCCeEEEEEcC-----
Q 019384           99 --HDAPVRCIEYSYAAGQVITGSWDK-----SLKCWDPRGASGQERTLVGTYPQPER-VYSLSLVGNRLVVATAG-----  165 (342)
Q Consensus        99 --h~~~V~~~~~~~~~~~l~sgs~D~-----~I~iWd~~~~~~~~~~~~~~~~~~~~-v~~~s~~~~~~~~~s~d-----  165 (342)
                        ....- +++.. ++..++.|+.++     .+.+||+.+..=   ..+........ ......++..++.++.+     
T Consensus        96 p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  170 (302)
T 2xn4_A           96 RDRRSTL-GAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEW---FHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ  170 (302)
T ss_dssp             SSCCBSC-EEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEE---EEECCCSSCCBSCEEEEETTEEEEECCEETTTTE
T ss_pred             Cccccce-EEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeE---eecCCCCCcccCceEEEECCEEEEEeCCCCCCCc
Confidence              11111 12222 556667777653     466788764320   11111111111 11222344444444432     


Q ss_pred             --CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCe---EEEEEeechhhhhcccceeeeEEecCCCC
Q 019384          166 --RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR---VAMEFFDLSEASQAKKYAFKCHRKSEAGR  240 (342)
Q Consensus       166 --~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~---~~i~~~d~~~~~~~~~~~~~~h~~~~~~~  240 (342)
                        ..+.+||..+..=...............+  .-++..+++++.++.   ..++.||.....-...-.+..      ..
T Consensus       171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~------~r  242 (302)
T 2xn4_A          171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVG--VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM------CR  242 (302)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS------CC
T ss_pred             cccEEEEEeCCCCcEEECCCCccccccccEE--EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC------cc
Confidence              35788888764211000000001111222  235666667654431   235678875432111100000      00


Q ss_pred             ceeeeeeEEEEcCCCCeEEEecCCC-----eEEEEeCCCce
Q 019384          241 DIVYPVNAIAFHPIYGTFATGGCDG-----FVNVWDGNNKK  276 (342)
Q Consensus       241 ~~~~~v~~v~~sp~~~~l~sgs~Dg-----~I~iWd~~~~~  276 (342)
                         ....++.+  ++..++.|+.++     .+.+||.++.+
T Consensus       243 ---~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          243 ---RNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             ---BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ---ccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence               00112222  567777877654     48889887653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=87.33  E-value=17  Score=33.09  Aligned_cols=106  Identities=7%  Similarity=0.060  Sum_probs=67.8

Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc--eeecccCC-
Q 019384           24 NLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK--EDILGKHD-  100 (342)
Q Consensus        24 ~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~--~~~~~~h~-  100 (342)
                      +.-.+|..+.||--. ..++.|||+.+............|.-..|..+..+. --.+..|..|++....  ..++..|. 
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~-lVT~taVyHWsi~~~s~P~kvFdR~~~  147 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA-LVTDNAVYHWSMEGESQPVKMFDRHSS  147 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEE-EECSSEEEEEESSSSCCCEEEEECCGG
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEE-EEcCCeeEEecccCCCCchhheecchh
Confidence            445577777777654 789999999886655555556678888887555443 2345678899986432  34444443 


Q ss_pred             ---cceeEEEEeCCCCEEEE-e--e----CCCcEEEEcCCC
Q 019384          101 ---APVRCIEYSYAAGQVIT-G--S----WDKSLKCWDPRG  131 (342)
Q Consensus       101 ---~~V~~~~~~~~~~~l~s-g--s----~D~~I~iWd~~~  131 (342)
                         ..|..-..+++.+.++- |  .    -.|.+.+|..+.
T Consensus       148 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er  188 (494)
T 1bpo_A          148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  188 (494)
T ss_dssp             GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred             cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence               45666666777776542 2  1    236778887653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=86.89  E-value=7.8  Score=35.36  Aligned_cols=101  Identities=11%  Similarity=0.121  Sum_probs=59.2

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee--ee-------cCCceEEEEEeC----CCCeEEEec------
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE--FM-------HGGPVLDCCFHD----DSSGFSASA------   79 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~--~~-------h~~~V~~~~~~~----~~~~~s~s~------   79 (342)
                      -..-+.++|.|+|+++++-...+.|++++..++.....  +.       ..+....++|+|    ++.++.+..      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            34668999999998887654445788887654432211  11       245678999987    555553332      


Q ss_pred             -------CCcEEEEEeccCc------eeecc----cCCcceeEEEEeCCCCEEEEee
Q 019384           80 -------DHTVRRLVFSHGK------EDILG----KHDAPVRCIEYSYAAGQVITGS  119 (342)
Q Consensus        80 -------D~~i~~w~~~~~~------~~~~~----~h~~~V~~~~~~~~~~~l~sgs  119 (342)
                             ...|..+.+....      +.++.    ........++|.|||.+.++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   1245555543221      11221    1112367899999998766644

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=86.20  E-value=16  Score=31.58  Aligned_cols=91  Identities=11%  Similarity=0.004  Sum_probs=42.4

Q ss_pred             CCCeEEEEeCC-CcEEEEECCC--ceeeeeee-c-CCce-EEEEEeCCCCe-EEEec-C---------CcEEEEEeccCc
Q 019384           30 HSDHLLVSSWD-KSVRLYDASA--NVLRGEFM-H-GGPV-LDCCFHDDSSG-FSASA-D---------HTVRRLVFSHGK   92 (342)
Q Consensus        30 ~~~~l~s~s~D-gti~vwd~~~--~~~~~~~~-h-~~~V-~~~~~~~~~~~-~s~s~-D---------~~i~~w~~~~~~   92 (342)
                      ++..++.|+.+ ..+.+||...  ........ . .... .+++... +.+ +.|+. +         ..+..+|..+..
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFID-GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEET-TEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEEC-CEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            66666777654 5688888863  33222111 1 1111 1222233 344 34544 2         357778877766


Q ss_pred             eeecccC--CcceeEEEEeCCCCEEEEeeCC
Q 019384           93 EDILGKH--DAPVRCIEYSYAAGQVITGSWD  121 (342)
Q Consensus        93 ~~~~~~h--~~~V~~~~~~~~~~~l~sgs~D  121 (342)
                      ...+..-  .......+...+++.++.|+.+
T Consensus        98 W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           98 WVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             EEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred             EEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence            4332211  1111111112356666777765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=85.28  E-value=18  Score=31.57  Aligned_cols=56  Identities=21%  Similarity=0.253  Sum_probs=34.6

Q ss_pred             eeEEEEcCCCCeEEEecC-------------CCeEEEEeCCCc---------eeeeccCCCCcceEEEEECCCCCEEEEE
Q 019384          246 VNAIAFHPIYGTFATGGC-------------DGFVNVWDGNNK---------KRLYQYSKYPTSIAALSFSRDGRLLAVA  303 (342)
Q Consensus       246 v~~v~~sp~~~~l~sgs~-------------Dg~I~iWd~~~~---------~~~~~~~~~~~~V~~v~~spdg~~las~  303 (342)
                      -..|+|.|||.++++-+.             -|.|.-.+....         ..+. ..+|.+ ...++|.|+|++.++=
T Consensus       142 g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~-a~G~RN-p~Gla~dp~G~L~~~d  219 (347)
T 3das_A          142 GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVY-SYGHRN-VQGLAWDDKQRLFASE  219 (347)
T ss_dssp             CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEE-EBCCSB-CCEEEECTTCCEEEEE
T ss_pred             CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEE-eeCCCC-cceEEECCCCCEEEEe
Confidence            567999999987777432             345544454321         1111 135644 5699999999877653

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=84.53  E-value=18  Score=30.70  Aligned_cols=77  Identities=19%  Similarity=0.220  Sum_probs=41.1

Q ss_pred             CCCeEEEecCC-----CeEEEEeCCCce--eeeccCCCCcceEEEEECCCCCEEEEEEeccccC--CCC-CCCCCcEEEE
Q 019384          254 IYGTFATGGCD-----GFVNVWDGNNKK--RLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEE--GDK-PHEPDAIFVR  323 (342)
Q Consensus       254 ~~~~l~sgs~D-----g~I~iWd~~~~~--~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~--~~~-~~~~~~~~~~  323 (342)
                      ++..++.|+.+     ..+.+||.++.+  .+..+...... .++ ..-++++++.|+......  +.. ....+.+.++
T Consensus       206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~-~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~y  283 (318)
T 2woz_A          206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS-ISL-VSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKY  283 (318)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS-CEE-EEETTEEEEECCBCCBC----CCBCCBCCCEEEE
T ss_pred             CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc-eEE-EEECCEEEEECCeeccCCCCceeccceeeeEEEE
Confidence            56777777643     357789987653  22222221111 122 234678777777544221  111 2335678888


Q ss_pred             EccCCcccc
Q 019384          324 SVNEIEVKP  332 (342)
Q Consensus       324 ~~~~~~~~~  332 (342)
                      +.+...|..
T Consensus       284 d~~~~~W~~  292 (318)
T 2woz_A          284 EDDKKEWAG  292 (318)
T ss_dssp             ETTTTEEEE
T ss_pred             eCCCCEehh
Confidence            887666654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=83.04  E-value=20  Score=30.26  Aligned_cols=77  Identities=19%  Similarity=0.243  Sum_probs=39.9

Q ss_pred             CCCeEEEecCCC-----eEEEEeCCCce--eeeccCCCCcceEEEEECCCCCEEEEEEeccccC--CCC-CCCCCcEEEE
Q 019384          254 IYGTFATGGCDG-----FVNVWDGNNKK--RLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEE--GDK-PHEPDAIFVR  323 (342)
Q Consensus       254 ~~~~l~sgs~Dg-----~I~iWd~~~~~--~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~--~~~-~~~~~~~~~~  323 (342)
                      ++.+++.|+.++     .+.+||.++.+  .+..+.........+.  -++++++.|+......  +.. ....+.+.+|
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~y  273 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRY  273 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEe
Confidence            567777777554     58889988753  2222221111112222  3778888777643211  110 1122457777


Q ss_pred             EccCCcccc
Q 019384          324 SVNEIEVKP  332 (342)
Q Consensus       324 ~~~~~~~~~  332 (342)
                      +.+...|+.
T Consensus       274 d~~~~~W~~  282 (315)
T 4asc_A          274 NEEEKKWEG  282 (315)
T ss_dssp             ETTTTEEEE
T ss_pred             cCCCChhhh
Confidence            776555543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=83.03  E-value=23  Score=30.85  Aligned_cols=58  Identities=22%  Similarity=0.146  Sum_probs=38.3

Q ss_pred             eeEEEEcC-------CCCeEEEecCCCeEEEEeCCCceeee--c-cCCCCcceEEEEECCCCCEEEEE
Q 019384          246 VNAIAFHP-------IYGTFATGGCDGFVNVWDGNNKKRLY--Q-YSKYPTSIAALSFSRDGRLLAVA  303 (342)
Q Consensus       246 v~~v~~sp-------~~~~l~sgs~Dg~I~iWd~~~~~~~~--~-~~~~~~~V~~v~~spdg~~las~  303 (342)
                      ...++|..       +|.++++.-..+.|...+.+.++.+.  . +.....++..+++.|||.++++.
T Consensus       273 p~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          273 VSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             EEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             cceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence            45667753       46667776677788888776554332  1 22233578999999999977654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=82.37  E-value=24  Score=30.71  Aligned_cols=95  Identities=15%  Similarity=0.099  Sum_probs=57.6

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-eeeee----ecCCceEEEEEeCC----CCeEEEec----C----Cc
Q 019384           20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-LRGEF----MHGGPVLDCCFHDD----SSGFSASA----D----HT   82 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-~~~~~----~h~~~V~~~~~~~~----~~~~s~s~----D----~~   82 (342)
                      ..-+.++|.|+|++++ +..+|.|+++|.. +. ....+    .-.+....++|.++    +.++.+..    +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLV-TERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEE-EETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEE-EeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            4678999999997555 4566999999743 33 11111    11346789999875    55654432    2    45


Q ss_pred             EEEEEeccC------ceeecc------cCCcceeEEEEeCCCCEEEEe
Q 019384           83 VRRLVFSHG------KEDILG------KHDAPVRCIEYSYAAGQVITG  118 (342)
Q Consensus        83 i~~w~~~~~------~~~~~~------~h~~~V~~~~~~~~~~~l~sg  118 (342)
                      |..++....      ...++.      .|  .-..++|.||+.+.++-
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTSCEEEEC
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCCcEEEEE
Confidence            666666543      111111      23  24579999999876664

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=82.33  E-value=24  Score=30.65  Aligned_cols=96  Identities=14%  Similarity=0.104  Sum_probs=57.6

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee--e----ecCCceEEEEEeCC----CCeEEEec-C-----CcE
Q 019384           20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE--F----MHGGPVLDCCFHDD----SSGFSASA-D-----HTV   83 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~--~----~h~~~V~~~~~~~~----~~~~s~s~-D-----~~i   83 (342)
                      ..-+.++|.|+|+++++ ..+|.|++++  .+.....  .    .-.+....++|+++    +.++.+.. .     ..|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            45689999999986654 5669999998  3332111  1    11346789999876    55554432 2     556


Q ss_pred             EEEEeccCc----eee---cc---cCCcceeEEEEeCCCCEEEEe
Q 019384           84 RRLVFSHGK----EDI---LG---KHDAPVRCIEYSYAAGQVITG  118 (342)
Q Consensus        84 ~~w~~~~~~----~~~---~~---~h~~~V~~~~~~~~~~~l~sg  118 (342)
                      ..++.....    ...   +.   +.......++|.||+.+.++-
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            677765431    111   11   111123589999999766664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	342
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-42
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-20
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-06

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  146 bits (369), Expect = 7e-42
 Identities = 70/337 (20%), Positives = 132/337 (39%), Gaps = 23/337 (6%)

Query: 13  ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN----VLRGEFMHGGPVLDCCF 68
           ++   P D IS+++       LL++SWD S+ +Y          L     +  P+L C F
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 69  HDDSSGFSASADHTVRRLVFSH----GKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSL 124
            D++             L          + +         C    Y   ++I  SWD  +
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124

Query: 125 KCWDPRGASGQ----ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQP- 179
           +  DPR         +           +++++    +RL+V      V  + L       
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184

Query: 180 -EQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLS--EASQAKKYAFKCHRKS 236
                                  GYA SS++GRVA+EFFD    + + +K++AF+CHR +
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244

Query: 237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRD 296
               ++ YPVN+I F P +    T G DG ++ W+   +K++  ++K+    + +  +  
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACS 303

Query: 297 GRLLAVASSYTFEEGDK------PHEPDAIFVRSVNE 327
             +L +A+S    + +            +I++    E
Sbjct: 304 DNILCLATSDDTFKTNAAIDQTIELNASSIYIIFDYE 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.9 bits (216), Expect = 2e-20
 Identities = 43/297 (14%), Positives = 98/297 (32%), Gaps = 14/297 (4%)

Query: 19  SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF-MHGGPVLDCCFHDDSSGFSA 77
              ++ + F      ++ +S D +++++D            H   V D  F       ++
Sbjct: 17  RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76

Query: 78  SADHTVRRLVF--SHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ 135
            +     +L           +  HD  V  +        +++ S DK++K W+ +  +G 
Sbjct: 77  CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ--TGY 134

Query: 136 ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVR 195
                  + +  R+   +  G  +   +  + V V+ +       + RE   ++   C+ 
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH--RHVVECIS 192

Query: 196 CYPNGTGYALSSVEGRVAMEFFDLSE----ASQAKKYAFKCHRKSEAGRDIV---YPVNA 248
             P  +  ++S   G    +           S+ K               +V     V  
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252

Query: 249 IAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
           + FH       +   D  + VWD  NK+ +   + +   + +L F +    +   S 
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (152), Expect = 7e-12
 Identities = 46/263 (17%), Positives = 86/263 (32%), Gaps = 16/263 (6%)

Query: 52  VLRGEFMHGGPVLDCCFHDDSSGF-SASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYS 109
            L G   H  PV    FH   S   SAS D T++   +  G  E  L  H   V+ I + 
Sbjct: 12  ALSG---HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68

Query: 110 YAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVN 169
           ++   + + S D ++K WD +G           +         +  G+ +V A+  + + 
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN--GDHIVSASRDKTIK 126

Query: 170 VYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFD-------LSEA 222
           +++++     +           R VR   +GT  A  S +  V +           L E 
Sbjct: 127 MWEVQTGYCVKTFTGHR--EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 184

Query: 223 SQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS 282
               +        S +                     +G  D  + +WD +    L    
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244

Query: 283 KYPTSIAALSFSRDGRLLAVASS 305
            +   +  + F   G+ +   + 
Sbjct: 245 GHDNWVRGVLFHSGGKFILSCAD 267

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.1 bits (149), Expect = 1e-11
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 3/112 (2%)

Query: 20  DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGF-SA 77
            G    +       LL  S DK+++++D S  +     + H   V    FH       S 
Sbjct: 206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC 265

Query: 78  SADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128
           + D T+R   + + +    L  H+  V  +++   A  V+TGS D+++K W+
Sbjct: 266 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.6 bits (197), Expect = 1e-17
 Identities = 39/291 (13%), Positives = 89/291 (30%), Gaps = 17/291 (5%)

Query: 19  SDGISNLRFSNHSDHLLVSSWDKSVRLYDA-SANVLRGEFMHGGPVLDCCFHDDSSGFSA 77
              I  + +   S  L+ +S D  + ++D+ + N +    +    V+ C +    +  + 
Sbjct: 55  LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114

Query: 78  SADHTVRR---LVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASG 134
                +     L    G   +  +       +            +      C      +G
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174

Query: 135 QERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCV 194
           Q+ T    +       SL+      V         ++D+R      ++  +  +     +
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM--CRQTFTGHESDINAI 232

Query: 195 RCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI 254
             +PNG  +A  S +    +                     + +  +I+  + +++F   
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLR-----------ADQELMTYSHDNIICGITSVSFSKS 281

Query: 255 YGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
                 G  D   NVWD     R    + +   ++ L  + DG  +A  S 
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.1 bits (157), Expect = 2e-12
 Identities = 22/116 (18%), Positives = 34/116 (29%), Gaps = 5/116 (4%)

Query: 18  PSDGISNLRFSNHSDHLLVSSWDKSVRL---YDASANVLRGEFMHGGPVLDCCFHDDSSG 74
               I+ + F  + +     S D + RL         +          +    F      
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284

Query: 75  F-SASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128
             +   D               +L  HD  V C+  +     V TGSWD  LK W+
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 1e-10
 Identities = 30/176 (17%), Positives = 55/176 (31%), Gaps = 21/176 (11%)

Query: 99  HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPER-VYSLSLV-- 155
           H   V  +  +      ++G+ D S K WD R     E     T+   E  + ++     
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-----EGMCRQTFTGHESDINAICFFPN 237

Query: 156 GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAME 215
           GN     +      ++DLR   +       ++      V    +G        +      
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC--N 295

Query: 216 FFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWD 271
            +D  +A +A       H            V+ +         ATG  D F+ +W+
Sbjct: 296 VWDALKADRAGV--LAGHDN---------RVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 6e-10
 Identities = 49/292 (16%), Positives = 87/292 (29%), Gaps = 23/292 (7%)

Query: 20  DGISNLRFSNHSDHL--LVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-S 76
           + I + R +     L  + ++ D   R+   +   LRG   H   +    +  DS    S
Sbjct: 16  NQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRG---HLAKIYAMHWGTDSRLLVS 72

Query: 77  ASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ 135
           AS D  +         +   +    + V    Y+ +   V  G  D     ++ +   G 
Sbjct: 73  ASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132

Query: 136 ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVR 195
            R           +     + +  +V ++G            Q                 
Sbjct: 133 VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192

Query: 196 CYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIY 255
                      S     + + +D+ E    +   F  H            +NAI F P  
Sbjct: 193 APDTRLFV---SGACDASAKLWDVREGMCRQT--FTGHES---------DINAICFFPNG 238

Query: 256 GTFATGGCDGFVNV--WDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
             FATG  D    +     + +   Y +      I ++SFS+ GRLL     
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.2 bits (170), Expect = 5e-14
 Identities = 40/317 (12%), Positives = 83/317 (26%), Gaps = 32/317 (10%)

Query: 19  SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-------------------H 59
           +  +  ++FS +    L +  +K+ ++Y  S   L                         
Sbjct: 62  TSVVCCVKFS-NDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 60  GGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGS 119
              +   CF  D    +  A+  + R+     ++ ++             Y        S
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180

Query: 120 WDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMS-- 177
                        +GQ    +        V      G  +   +  R V V+D       
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240

Query: 178 ---QPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR 234
                E    +  K     V    +G      S++  V +     +  +++         
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ-NANNKSDSKTPNSGT 299

Query: 235 KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAAL--- 291
                      V ++A         +G  D  V  WD  +   L     +  S+ ++   
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 359

Query: 292 ---SFSRDGRLLAVASS 305
              S   +  + A  S 
Sbjct: 360 NGSSLGPEYNVFATGSG 376

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 3e-10
 Identities = 57/271 (21%), Positives = 90/271 (33%), Gaps = 25/271 (9%)

Query: 19  SDGISNLRFSNHSDHLLVSSWDKSVRLYDAS--ANVLRGEFMHGGPVLDCCFHDDSSGFS 76
              I ++ FS     L   + D+ +R++D      V+  +           F       S
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180

Query: 77  ASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ-VITGSWDKSLKCWDPRGASGQ 135
            S D TVR      G+  +    +  V  +  S   G+ +  GS D++++ WD       
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240

Query: 136 ERTLVGTYPQP---ERVYSLSLV--GNRLVVATAGRHVNVYDLRN----------MSQPE 180
           ER            + VYS+     G  +V  +  R V +++L+N           S   
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300

Query: 181 QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGR 240
           +      K     V    N       S +  V   F+D    S       + HR S    
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL--FWDKK--SGNPLLMLQGHRNSVIS- 355

Query: 241 DIVYPVNAIAFHPIYGTFATGGCDGFVNVWD 271
             V   N  +  P Y  FATG  D    +W 
Sbjct: 356 --VAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.8 bits (130), Expect = 5e-09
 Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 21/133 (15%)

Query: 19  SDGISNLRFSNHSDHLLVSSWDKSVRLYD-------------ASANVLRGEFMHGGPVLD 65
            D + ++ F+     ++  S D+SV+L++              S         H   VL 
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 66  CCFHDDSSGF-SASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAA------GQVIT 117
                +     S S D  V       G    +L  H   V  +  +  +          T
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373

Query: 118 GSWDKSLKCWDPR 130
           GS D   + W  +
Sbjct: 374 GSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 41/321 (12%), Positives = 96/321 (29%), Gaps = 47/321 (14%)

Query: 17  PPSDGISNLRFSNHSDHLLVSSWDKSV-RLYDASANVLRGEFMHGGPVLDCCFHDDSSGF 75
             S  + +      +D+ ++  ++ ++ R  D     L     H   V    F +D    
Sbjct: 23  LDSQSVPDALKKQTNDYYIL--YNPALPREIDVE---LHKSLDHTSVVCCVKFSNDGEYL 77

Query: 76  SASADHTVRRLVFSHGKE-------------------DILGKHDAPVRCIEYSYAAGQVI 116
           +   + T +    S G                           D  +R + +S     + 
Sbjct: 78  ATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137

Query: 117 TGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNM 176
           TG+ D+ ++ WD        + ++      + +YSL    +   + +      V      
Sbjct: 138 TGAEDRLIRIWDIE----NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 193

Query: 177 SQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKS 236
           +       S     T       +G   A  S++  V +   +            +   ++
Sbjct: 194 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE------TGFLVERLDSEN 247

Query: 237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKR------------LYQYSKY 284
           E+G      V ++ F     +  +G  D  V +W+  N                  Y  +
Sbjct: 248 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307

Query: 285 PTSIAALSFSRDGRLLAVASS 305
              + +++ +++   +   S 
Sbjct: 308 KDFVLSVATTQNDEYILSGSK 328

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 16  NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSG 74
               D + ++  + + +++L  S D+ V  +D  +         H   V+     + SS 
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 364

Query: 75  -------FSASADHTVR 84
                   + S D   R
Sbjct: 365 GPEYNVFATGSGDCKAR 381

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.2 bits (162), Expect = 5e-13
 Identities = 30/257 (11%), Positives = 80/257 (31%), Gaps = 11/257 (4%)

Query: 62  PVLDCCFHDDSSGF-SASADHTVRRLVFSHGK---EDILGKHDAPVRCIEYSYAAGQVIT 117
           P+    ++ D +       +H V     S  K      L +H+  V  ++++  + +++T
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 118 GSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMS 177
              D++   W  +G + +   ++    +  R    +    +  V +  R +++      +
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 178 QPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK-- 235
                +      ++  +    +     L++         F        ++ A        
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188

Query: 236 -----SEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
                          V+ + F       A    D  V + D + K  +   +     + A
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248

Query: 291 LSFSRDGRLLAVASSYT 307
           ++F  +  L+A      
Sbjct: 249 VTFITESSLVAAGHDCF 265

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 30/317 (9%), Positives = 81/317 (25%), Gaps = 56/317 (17%)

Query: 19  SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSAS 78
           +  ++ + ++  S+ ++    D++  ++       +   +             +      
Sbjct: 51  NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF 110

Query: 79  ADHTVRRLVF---------SHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDP 129
           A  +  R++              + I     + V  +++   +  +  GS D   + +  
Sbjct: 111 AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 170

Query: 130 RGASGQERTLVGTYPQPER--------------VYSLSLVGNRLVVATAGRHVNVYDLRN 175
                +ER     +                   V+ +    N   VA       V     
Sbjct: 171 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230

Query: 176 MSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK 235
             +      +S       V      +  A +  +    +  +D +    +        ++
Sbjct: 231 DKKMAVATLASETLPLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQ 289

Query: 236 SEAGRDIV----------------------------YPVNAIAFHP----IYGTFATGGC 263
           S                                     V+ I+           F T G 
Sbjct: 290 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM 349

Query: 264 DGFVNVWDGNNKKRLYQ 280
           DG +++WD  + +   +
Sbjct: 350 DGGMSIWDVRSLESALK 366

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 4e-12
 Identities = 33/293 (11%), Positives = 78/293 (26%), Gaps = 23/293 (7%)

Query: 19  SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM------HGGPVLDCCFHDDS 72
            + +  +  S +    + +     V+++D S    +              +  C    D 
Sbjct: 51  GEVVCAVTIS-NPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 73  SGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA 132
                  + +   +         +           Y+ A        +            
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169

Query: 133 SGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTR 192
              +  +       +    + +  +   + T G   N     ++ +  Q ++     Q  
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD-NTVRSWDLREGRQLQQHDFTSQIF 228

Query: 193 CVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH 252
            +   P G   A+      V +   +     +  KY    H            V ++ F 
Sbjct: 229 SLGYCPTGEWLAVGMESSNVEVLHVN-----KPDKYQLHLHE---------SCVLSLKFA 274

Query: 253 PIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
                F + G D  +N W       ++Q  K  +S+ +   S D + +   S 
Sbjct: 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSG 326

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 3e-08
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 1/110 (0%)

Query: 20  DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SAS 78
             I +L +    + L V     +V +   +        +H   VL   F      F S  
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG 284

Query: 79  ADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWD 128
            D+ +      +G      K  + V   + S     ++TGS DK    ++
Sbjct: 285 KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 37/283 (13%), Positives = 72/283 (25%), Gaps = 39/283 (13%)

Query: 58  MHGGPVLDCCFHDDSSG----FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAG 113
           M   P     FH  + G         D  +   +  H ++     H   V  +  S    
Sbjct: 7   MGSKPAYS--FHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR 64

Query: 114 QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE-RVYSLSLVGNRLVVATAGR------ 166
            V TG     +K WD      +           +  + S  L+ +   +   G       
Sbjct: 65  HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123

Query: 167 ------HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLS 220
                    +      S P     +       C  C  +G           +  +F   +
Sbjct: 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183

Query: 221 EASQAKKYAFKCHRKSEAGRD------------------IVYPVNAIAFHPIYGTFATGG 262
           + +     +    +    G D                      + ++ + P  G +   G
Sbjct: 184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP-TGEWLAVG 242

Query: 263 CDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
            +         NK   YQ   + + + +L F+  G+       
Sbjct: 243 MESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK 285

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 6/67 (8%)

Query: 245 PVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPT-----SIAALSFSRDGRL 299
            V A+            G  G V VWD ++       S+         I +     DG  
Sbjct: 53  VVCAVTISN-PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111

Query: 300 LAVASSY 306
           L V    
Sbjct: 112 LIVGGEA 118

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.1 bits (154), Expect = 5e-12
 Identities = 44/325 (13%), Positives = 90/325 (27%), Gaps = 47/325 (14%)

Query: 27  FSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGFSASADHTVRR 85
                ++++  + DK +R+YD+       +   H G V    +       S S D TVR 
Sbjct: 19  LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 78

Query: 86  LV---FSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS--------- 133
                                  I        ++TGS D +L  W     S         
Sbjct: 79  WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 138

Query: 134 ----------GQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQ----- 178
                          +         V ++S  GN +V  +    + V+D+  M       
Sbjct: 139 DYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 198

Query: 179 ------------------PEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLS 220
                                  +++++                 + V      + F +S
Sbjct: 199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVS 258

Query: 221 EASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQ 280
            A+      +  +  S         ++AI    +       G +   N+++  + K ++ 
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 318

Query: 281 YSKYPTS-IAALSFSRDGRLLAVAS 304
                   I +++F     + AV  
Sbjct: 319 NILKDADQIWSVNFKGKTLVAAVEK 343

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 5/128 (3%)

Query: 52  VLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSY 110
            LRG   H   V+ C   +D+   + + D  +R     + K    L  HD  V  ++Y++
Sbjct: 7   TLRG---HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

Query: 111 AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNV 170
             G +++GS D++++ WD +                            +V  +    ++V
Sbjct: 64  -GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122

Query: 171 YDLRNMSQ 178
           + L   S 
Sbjct: 123 WKLPKESS 130

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 2/67 (2%)

Query: 20  DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM--HGGPVLDCCFHDDSSGFSA 77
             +S +     SD++LVS  +    +Y+  +  L    +      +    F   +   + 
Sbjct: 282 TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAV 341

Query: 78  SADHTVR 84
             D    
Sbjct: 342 EKDGQSF 348

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 246 VNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS 305
           +  + F   Y    TG  D  + V+D  NKK L Q S +   + AL ++  G L++ ++ 
Sbjct: 16  ITCLQFEDNY--VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTD 73

Query: 306 YTF 308
            T 
Sbjct: 74  RTV 76

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 1e-10
 Identities = 43/247 (17%), Positives = 78/247 (31%), Gaps = 18/247 (7%)

Query: 29  NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVF 88
            H   ++  S D ++R++D          M     + C  +D     S + D  V+ +  
Sbjct: 105 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK-VWD 163

Query: 89  SHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPER 148
              +  +        R     +    V++GS D S++ WD          +         
Sbjct: 164 PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE----TGNCIHTLTGHQSL 219

Query: 149 VYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV 208
              + L  N LV   A   V ++D++     +  +  + K+Q+       N      SS 
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPN-KHQSAVTCLQFNKNFVITSSD 278

Query: 209 EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDG--- 265
           +G V  + +DL      +         S         V  I         A G  +G   
Sbjct: 279 DGTV--KLWDLKTGEFIRNLVTLESGGSGG------VVWRIRASNTKLVCAVGSRNGTEE 330

Query: 266 -FVNVWD 271
             + V D
Sbjct: 331 TKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 55/326 (16%), Positives = 99/326 (30%), Gaps = 70/326 (21%)

Query: 27  FSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDD-------------- 71
                + ++  S D +++++ A         + H G V      D+              
Sbjct: 23  LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW 82

Query: 72  -------------------------SSGFSASADHTVRRLVFSHGKED-ILGKHDAPVRC 105
                                        S S D T+R      G+   +L  H A VRC
Sbjct: 83  NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 142

Query: 106 IEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG 165
           ++Y     +V++G++D  +K WDP   +    TL G      RVYSL   G  +V  +  
Sbjct: 143 VQYDG--RRVVSGAYDFMVKVWDPETET-CLHTLQG---HTNRVYSLQFDGIHVVSGSLD 196

Query: 166 RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQA 225
             + V+D+   +                           +   +  +     D    S  
Sbjct: 197 TSIRVWDVETGNC-------------IHTLTGHQSLTSGMELKDNILVSGNAD----STV 239

Query: 226 KKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTF-ATGGCDGFVNVWDGNNKKRLYQYSKY 284
           K +  K  +  +  +      +A+        F  T   DG V +WD    + +      
Sbjct: 240 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 299

Query: 285 PTS-----IAALSFSRDGRLLAVASS 305
            +      +  +  S    + AV S 
Sbjct: 300 ESGGSGGVVWRIRASNTKLVCAVGSR 325

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 6e-07
 Identities = 27/199 (13%), Positives = 57/199 (28%), Gaps = 9/199 (4%)

Query: 29  NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVF 88
                ++  ++D  V+++D                +     D     S S D ++R    
Sbjct: 145 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV 204

Query: 89  SHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPE 147
             G     L  H +    +E       +++G+ D ++K WD +     +        Q  
Sbjct: 205 ETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 262

Query: 148 RVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQT---RCVRCYPNGTGYA 204
                    N ++ ++    V ++DL+                      +R        A
Sbjct: 263 VTCL-QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA 321

Query: 205 LSSVEG--RVAMEFFDLSE 221
           + S  G     +   D   
Sbjct: 322 VGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 34/255 (13%), Positives = 75/255 (29%), Gaps = 31/255 (12%)

Query: 52  VLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSY 110
           VL+G   H   V+ C     +   S S D+T++      GK    L  H   V   +   
Sbjct: 11  VLKG---HDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67

Query: 111 AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNV 170
                 +      +   +              Y     V  + L   R+V  +    + V
Sbjct: 68  NIIISGSTDRTLKVWNAETGECIHT------LYGHTSTVRCMHLHEKRVVSGSRDATLRV 121

Query: 171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAF 230
           +D+               +         +G      + +  V +   +    ++   +  
Sbjct: 122 WDIETGQCLHVLM----GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE----TETCLHTL 173

Query: 231 KCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAA 290
           + H            V ++ F  I+    +G  D  + VWD      ++  + + +  + 
Sbjct: 174 QGHT---------NRVYSLQFDGIH--VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 222

Query: 291 LSFSRDGRLLAVASS 305
           +       +L   ++
Sbjct: 223 MELK--DNILVSGNA 235

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 59.1 bits (141), Expect = 2e-10
 Identities = 28/318 (8%), Positives = 69/318 (21%), Gaps = 32/318 (10%)

Query: 7   PPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWD--KSVRLYDASANVLRGEFMHGGPVL 64
             +    L  P    I  +R    +    +        + +YD           + G V 
Sbjct: 30  DVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF 89

Query: 65  DCCFHDDSSGFSASADHTVRRL--VFSHGKEDILGKHDAPVRCIEY----------SYAA 112
                 +      + D        + +     I    +A +                   
Sbjct: 90  AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK 149

Query: 113 GQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD 172
                G   +++  +D  G      T   ++       +       L   +        D
Sbjct: 150 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA---DSKNLYYLSYRSLDPSPD 206

Query: 173 LRNMSQPEQRRESSLKYQ-----TRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK 227
              ++   +                  +  P          +        D+ + S    
Sbjct: 207 RVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD------LNDMYKRSSPIN 260

Query: 228 YAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTS 287
                +R        +   +          +      G +  +D   +K     ++   +
Sbjct: 261 VDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNN 316

Query: 288 IAALSFSRDGRLLAVASS 305
           +  L  S D + + V   
Sbjct: 317 LTDLRLSADRKTVMVRKD 334

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.1 bits (89), Expect = 6e-04
 Identities = 18/246 (7%), Positives = 48/246 (19%), Gaps = 23/246 (9%)

Query: 39  WDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGK 98
              +V      A +           +   F              +        K      
Sbjct: 117 GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT 176

Query: 99  HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYP---QPERVYSLSLV 155
            ++      +   +  +   S+       D    +     +   +     P       LV
Sbjct: 177 ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV 236

Query: 156 GNRLVVATAGRHVNVYDLRNMSQP----EQRRESSLKYQTRCVRCYPNGT-GYALSSVEG 210
              +        +N    R+        + R    L+          +G           
Sbjct: 237 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPE 296

Query: 211 RVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVW 270
           +  +  +D+                     ++   +  +       T      DG +  +
Sbjct: 297 KGVLLKYDVKTRKV---------------TEVKNNLTDLRLSADRKTVMVRKDDGKIYTF 341

Query: 271 DGNNKK 276
                +
Sbjct: 342 PLEKPE 347

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.5 bits (134), Expect = 1e-09
 Identities = 32/291 (10%), Positives = 68/291 (23%), Gaps = 18/291 (6%)

Query: 19  SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM--HGGPVLDCCFHDDSSGFS 76
           +  I+ L  S     L  +  +  +  +D S  +    F   H   +           F+
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 71

Query: 77  ASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQE 136
            S D  ++ +       D        +       A       +     K           
Sbjct: 72  VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT 131

Query: 137 RTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRC 196
              +        + +                  V      S+    + S           
Sbjct: 132 EVPISYNSSCVALSN--------------DKQFVAVGGQDSKVHVYKLSGASVSEVKTIV 177

Query: 197 YPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG 256
           +P        S  G   +      +              + +       V  +++ P   
Sbjct: 178 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 237

Query: 257 TFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALS--FSRDGRLLAVASS 305
             ATG  D  V VW+ N         K   ++++++     +   +  A  
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 30  HSDHLLVSSWDKSVRLYDASAN----VLRGEFMHGGPVLDCCFHDDSSGFSASADHTVR 84
            +  L   S D SV +++ +      ++         V    + ++++  SA  D  ++
Sbjct: 235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.9 bits (83), Expect = 0.002
 Identities = 4/32 (12%), Positives = 11/32 (34%)

Query: 99  HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR 130
           H+  +  +  S     + +   +  +  WD  
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDIS 42

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 5e-09
 Identities = 35/356 (9%), Positives = 94/356 (26%), Gaps = 61/356 (17%)

Query: 19  SDGISNLRFSNHSDHLLVSSWDKSVRLYDAS-------ANVLRGEFMHGGPVLDCCFHDD 71
              I ++   N     +  S D  ++++D          +     F+H   +        
Sbjct: 14  DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71

Query: 72  SSGF--------SASADHTVR-----------RLVFSHGKEDILGKHDAPVRCIEYSYAA 112
                       + S    +            +++F                 +++  + 
Sbjct: 72  IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131

Query: 113 GQ-----VITGSWDKSLKCWDPRGASGQERTLVGTY--------------PQPERVYSLS 153
            +     ++      +   W     + +  +L   +                 +   S+ 
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191

Query: 154 LVGNRLVVATAGRHVNVYDLR---NMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEG 210
           +    L+ AT   +  V                + S+   +  +R        +L ++  
Sbjct: 192 ISERGLI-ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250

Query: 211 RVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIV------YPVNAIAFHPIYGTFATGGCD 264
                       ++  +        + + +  +        V +++F+    T  + G D
Sbjct: 251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 310

Query: 265 GFVNVWDGNNKKRLYQYSKYPTSIA----ALSFSRDGRLLAVASSYTFEEGDKPHE 316
           G +  WD   K+R+   + +   I      L+    G  LA    +  +   K   
Sbjct: 311 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWR 366

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 32/298 (10%), Positives = 80/298 (26%), Gaps = 62/298 (20%)

Query: 18  PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFHDDSSGFS 76
            S G+  L++      ++    D +++++D +    +     H G VL   + +      
Sbjct: 14  TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITG 71

Query: 77  ASADHTVRRLVF-------------------------------------------SHGKE 93
           +S        V                                                 
Sbjct: 72  SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR 131

Query: 94  DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLS 153
            +L  H A V  +++      +++ S D+++K W+          +         +  L 
Sbjct: 132 RVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTS----TCEFVRTLNGHKRGIACLQ 185

Query: 154 LVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA 213
                +V  ++   + ++D+   +                +          + S      
Sbjct: 186 YRDRLVVSGSSDNTIRLWDIECGACLRVLE------GHEELVRCIRFDNKRIVSGAYDGK 239

Query: 214 MEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWD 271
           ++ +DL  A   +  A     ++         V  + F        +   D  + +WD
Sbjct: 240 IKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQFDE--FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 12/129 (9%)

Query: 10  SGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFH 69
           +   +                   ++  S D ++RL+D               ++ C   
Sbjct: 167 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 226

Query: 70  DDSSGFSASADHTVRRLVFSHGKED----------ILGKHDAPVRCIEYSYAAGQVITGS 119
           D+    S + D  ++        +            L +H   V  +++     Q+++ S
Sbjct: 227 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSS 284

Query: 120 WDKSLKCWD 128
            D ++  WD
Sbjct: 285 HDDTILIWD 293

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.2 bits (123), Expect = 3e-08
 Identities = 25/285 (8%), Positives = 61/285 (21%), Gaps = 8/285 (2%)

Query: 24  NLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFH-DDSSGFSASADH 81
            L  +   D +   +   SV      +      +  H                 S     
Sbjct: 22  VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHG 80

Query: 82  TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVG 141
            VR    +     +          ++      +    +     +            T  G
Sbjct: 81  NVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG 140

Query: 142 TYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGT 201
                 R  +                 +         P + + +  ++         N  
Sbjct: 141 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD 200

Query: 202 GYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATG 261
           G   +S  G   +  ++  + ++   +     +           V  + + P     A+ 
Sbjct: 201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN----VAHSGSVFGLTWSPDGTKIASA 256

Query: 262 GCDGFVNVWDGNNKKRLYQYS-KYPTSIAALSFSRDGRLLAVASS 305
             D  + +W+    K               L      + L   S+
Sbjct: 257 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 301

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 114 QVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDL 173
           ++ + S DK++K W+       E+T+       ++   +      LV  +A   +N  + 
Sbjct: 252 KIASASADKTIKIWNVATLK-VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 57  FMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE--DILGKHDAPVRCIEYSYAAGQ 114
              G         D +   SASAD T++    +  K    I        + +   +    
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 295

Query: 115 VITGSWDKSLKCWDP 129
           +++ S +  +   +P
Sbjct: 296 LVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 33/264 (12%), Positives = 76/264 (28%), Gaps = 23/264 (8%)

Query: 19  SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFM---HGGPVLDCCFHDDSS-- 73
           S   +  + S    +        +VR++D +      +       GPV D  +  +S   
Sbjct: 58  SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 117

Query: 74  -GFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGA 132
                  +      +F  G  +      A          +      S           G 
Sbjct: 118 AAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP 177

Query: 133 SGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKY--- 189
             + ++  G + +       +  G+          + +Y+  + ++     + SLK    
Sbjct: 178 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 237

Query: 190 --QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN 247
                 +   P+GT  A +S +  +    ++++          K  +    G  I     
Sbjct: 238 SGSVFGLTWSPDGTKIASASADKTIK--IWNVAT--------LKVEKTIPVGTRIEDQQL 287

Query: 248 AIAFHPIYGTFATGGCDGFVNVWD 271
            I +        +   +GF+N  +
Sbjct: 288 GIIWTK--QALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 8/71 (11%), Positives = 20/71 (28%), Gaps = 1/71 (1%)

Query: 61  GPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGS 119
           G  +                 +V  +      + +I  +H       + S +     +G 
Sbjct: 18  GTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77

Query: 120 WDKSLKCWDPR 130
              +++ WD  
Sbjct: 78  VHGNVRIWDTT 88

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 12/85 (14%), Positives = 19/85 (22%), Gaps = 8/85 (9%)

Query: 220 SEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLY 279
           SE SQ     F    ++  G         +   P             V      +     
Sbjct: 1   SEFSQ--TALFPSLPRTARGT-----AVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTE 52

Query: 280 QYSKYPTSIAALSFSRDGRLLAVAS 304
            Y+++         S  G   A   
Sbjct: 53  IYTEHSHQTTVAKTSPSGYYCASGD 77

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (120), Expect = 6e-08
 Identities = 30/287 (10%), Positives = 74/287 (25%), Gaps = 23/287 (8%)

Query: 19  SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSAS 78
           + GI+ L  +     L+  S+D  +  + +S         H   ++              
Sbjct: 13  NKGITALTVN----PLISGSYDGRIMEWSSS----SMHQDHSNLIVSLDNSKA------- 57

Query: 79  ADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERT 138
                +        + +                A     G         D          
Sbjct: 58  -----QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 112

Query: 139 LVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYP 198
           ++ +        ++SL  N + V     +       +  +     ++ L+ +   +   P
Sbjct: 113 IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP 172

Query: 199 NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTF 258
           + T    ++ +    +  +DL               K  A         A          
Sbjct: 173 SETYI--AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV 230

Query: 259 ATGGCDGFVNVWD-GNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS 304
           ATG  D  + ++      K +   + +   +  L +     L++  +
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGA 277

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (104), Expect = 6e-06
 Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 3/74 (4%)

Query: 57  FMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDI--LGKHDAPVRCIEYSYAAGQ 114
           +       +    ++    + S D  +         + I  L  H   V  + +      
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE-TPST 271

Query: 115 VITGSWDKSLKCWD 128
           +++   D  +K W+
Sbjct: 272 LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (103), Expect = 9e-06
 Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 20  DGISNLRFSNHSDHLLVSSWDKSVRLYDAS--ANVLRGEFMHGGPVLDCCFHDDSSGFSA 77
                       D +   S D ++ +Y       +++    H   V +  +   S+  S+
Sbjct: 216 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSS 275

Query: 78  SADHTVR 84
            AD  ++
Sbjct: 276 GADACIK 282

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 24/302 (7%), Positives = 68/302 (22%), Gaps = 32/302 (10%)

Query: 32  DHLLVSSWDKSVRLYDASANVLRGEF---MHGGPVLDCCFHDDSSG--FSASADHTVRRL 86
           D++L  +    + + D     +         G   +             + +   ++ ++
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 87  VFSHGKEDILGKHDAPVRC------IEYSYAAGQVITGSWDKSLKCWDPRGASG------ 134
               G+         P            S     +        L+               
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 135 -QERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRC 193
            +  +    +  P ++  L+   +   +   GR ++V D           +  ++     
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAG---TLVEDKPIQSWEAE 178

Query: 194 VRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP 253
               P+            V    F  +                         +       
Sbjct: 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238

Query: 254 IYGTFA----------TGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVA 303
           +   +             G    +  +D      + +    P S  +++ S DG  + + 
Sbjct: 239 MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASI-KRVPLPHSYYSVNVSTDGSTVWLG 297

Query: 304 SS 305
            +
Sbjct: 298 GA 299

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 32/302 (10%), Positives = 70/302 (23%), Gaps = 26/302 (8%)

Query: 21  GISNLRFSNHSDHLLVS-SWDKSVRLYDASANVLRGEFMHGGPVLDCCFH-------DDS 72
                  +        + +  +S+   D       G      P              D  
Sbjct: 35  TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK 94

Query: 73  SGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLK-----CW 127
           +     +   +    F      +       +   +   A  Q+   +W +          
Sbjct: 95  TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR 154

Query: 128 DPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSL 187
           D      +  TLV   P            + L V        V      +  +    +  
Sbjct: 155 DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP 214

Query: 188 KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR---------KSEA 238
                 +      TG         + + +F  +      +     +           S  
Sbjct: 215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIK 274

Query: 239 GRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKY---PTSIAALS-FS 294
              + +   ++       T   GG  G +  +D    ++  Q         S+A++  F+
Sbjct: 275 RVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFT 334

Query: 295 RD 296
           RD
Sbjct: 335 RD 336

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.1 bits (118), Expect = 1e-07
 Identities = 29/310 (9%), Positives = 82/310 (26%), Gaps = 33/310 (10%)

Query: 27  FSNHSDHLLVSSWDKSVRLYDASANVLRGEFM--HGGPVLDCCFHDDSSGF--SASADHT 82
                ++++V+++  ++ + D +++ +    +              D+       +    
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 83  VRRLVFSHGKED-------ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRG---- 131
           +  +     K         + G+    +     S    +V                    
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 132 ------ASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD-----LRNMSQPE 180
                 A G E   V T+P P +VY +    +  +         +          +    
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183

Query: 181 QRRESSLKYQTRCVRCYPNGTG-YALSSVEGRVAMEFFDLSEASQAKKY----AFKCHRK 235
             R+            + +    +++     R   +  D + A     Y           
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243

Query: 236 SEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSR 295
           ++   D+          P       G     +  +D   +K + + +    +   ++F +
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLI-KAANLDHTYYCVAFDK 301

Query: 296 DGRLLAVASS 305
            G  L +  +
Sbjct: 302 KGDKLYLGGT 311

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 9/107 (8%), Positives = 21/107 (19%), Gaps = 2/107 (1%)

Query: 26  RFSNHSDHLLVSSWDKSVRLYDASAN--VLRGEFMHGGPVLDCCFHDDSSGFSASADHTV 83
           RF +       +         D        +                          + +
Sbjct: 215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRL 274

Query: 84  RRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR 130
            +      K       D    C+ +     ++  G     L  ++P 
Sbjct: 275 AKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 19/265 (7%), Positives = 47/265 (17%), Gaps = 31/265 (11%)

Query: 19  SDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-----VLRGEFMHGGPVLDCCFHDDSS 73
              + +   S     +  +                   V           +         
Sbjct: 88  GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQV 147

Query: 74  GFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS 133
               +AD      V       +  K       +       +  +                
Sbjct: 148 YLMRAADDG-SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPR-- 204

Query: 134 GQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRC 193
                    +     +            A         DL+      Q      +     
Sbjct: 205 -------HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG 257

Query: 194 VRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP 253
           +R   +                 +DL +         K  + +            +AF  
Sbjct: 258 LRSPKDPNQIYGVLNRLAK----YDLKQ--------RKLIKAANLDH----TYYCVAFDK 301

Query: 254 IYGTFATGGCDGFVNVWDGNNKKRL 278
                  GG    + V++ +  +++
Sbjct: 302 KGDKLYLGGTFNDLAVFNPDTLEKV 326

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.0 bits (115), Expect = 3e-07
 Identities = 25/325 (7%), Positives = 70/325 (21%), Gaps = 39/325 (12%)

Query: 8   PTSGRELGNPPSDGISNLRFSNHSDHLLVSSW----------DKSVRLYDASANVLRGEF 57
             +GR +G      + N   ++    +  +S              V ++D    +   + 
Sbjct: 35  GEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADI 94

Query: 58  MHGGPV-------------------LDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGK 98
                                    L       +                    +     
Sbjct: 95  ELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF 154

Query: 99  HDAPVRCIEYSY-AAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ---PERVYSLSL 154
             AP     +    +   +    + + +         ++  L+          R+   + 
Sbjct: 155 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY 214

Query: 155 VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAM 214
            G    +  +                +R +       + V  +       L   +     
Sbjct: 215 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 274

Query: 215 EFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP--IYGTFATGGCDGFVNVWDG 272
                           +   K E G      +++I          +A    D  + + D 
Sbjct: 275 HKTASRFVVVLDAKTGERLAKFEMGH----EIDSINVSQDEKPLLYALSTGDKTLYIHDA 330

Query: 273 NNKKRLYQYSKYPTSIAALSFSRDG 297
            + + L   ++       ++ +  G
Sbjct: 331 ESGEELRSVNQLGHGPQVITTADMG 355

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 4e-06
 Identities = 39/303 (12%), Positives = 85/303 (28%), Gaps = 20/303 (6%)

Query: 22  ISNLRFSNHSDHLLVSSWDKS-VRLYDASAN----VLRGEFMHGGPVLDCCFHDDSSGF- 75
            ++L +   ++ +       + VR  D   +    V++        V    F        
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79

Query: 76  --SASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS 133
             S      V    ++  KE    + +      E+   AG +   SWD   +     G  
Sbjct: 80  LCSGDESGKVIVWGWTFDKESNSVEVN---VKSEFQVLAGPISDISWDFEGRRLCVVGEG 136

Query: 134 GQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRC 193
                +  ++     +  +S    R+      +   +  +               ++   
Sbjct: 137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA 196

Query: 194 VRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP 253
                +  G  +  VE       F ++  S  K   F                       
Sbjct: 197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 256

Query: 254 IY-----GTFATGGCDGFVNVWDGNNKKRLYQYS----KYPTSIAALSFSRDGRLLAVAS 304
                    FAT G D  + VWD    K + +++    +       +  + +GR+++++ 
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316

Query: 305 SYT 307
             T
Sbjct: 317 DGT 319

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	342
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.93
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.85
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.84
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.8
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.79
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.77
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.7
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.69
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.66
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.52
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.51
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.38
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.28
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.19
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.08
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.99
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.77
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.75
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.64
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.63
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.59
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.55
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.42
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.37
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.23
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.17
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.12
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.06
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.04
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.96
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.86
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.86
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.82
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.42
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.08
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.68
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.79
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.53
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	92.91
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	91.61
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.73
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	90.1
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.02
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	89.54
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	89.44
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	88.55
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	88.21
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	85.19
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	84.55
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	83.14
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	81.44

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-38  Score=283.21  Aligned_cols=283  Identities=16%  Similarity=0.209  Sum_probs=220.0

Q ss_pred             CCCccCCC-CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce------eeeeeecCCceEEEEEeCCCC-eEEEecC
Q 019384            9 TSGRELGN-PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV------LRGEFMHGGPVLDCCFHDDSS-GFSASAD   80 (342)
Q Consensus         9 ~~~~~~~~-~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~------~~~~~~h~~~V~~~~~~~~~~-~~s~s~D   80 (342)
                      .+.+.+.. .|.+.|++|+|+|+|++||||+ ||+|+|||+..+.      ......|.+.|.+++|++++. +++++.|
T Consensus        40 ~~~~~~~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d  118 (337)
T d1gxra_          40 RHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA  118 (337)
T ss_dssp             SEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred             CCceEEEECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc
Confidence            33444442 7899999999999999999987 8999999986532      122346899999999997766 5689999


Q ss_pred             CcEEEEEeccCce---eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE--ecc
Q 019384           81 HTVRRLVFSHGKE---DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL--SLV  155 (342)
Q Consensus        81 ~~i~~w~~~~~~~---~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~--s~~  155 (342)
                      +.|++|++.....   ..+..|...|.+++|+|++..+++++.|+.|++||+++...  .....  .+...+.++  +.+
T Consensus       119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~--~~~~~--~~~~~v~~l~~s~~  194 (337)
T d1gxra_         119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL--VRQFQ--GHTDGASCIDISND  194 (337)
T ss_dssp             SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEEC--CCSSCEEEEEECTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccc--cccccccccccccc
Confidence            9999999876542   34678999999999999999999999999999999875432  11122  233344444  456


Q ss_pred             CCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEe
Q 019384          156 GNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK  235 (342)
Q Consensus       156 ~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~  235 (342)
                      ++.+++++.|+.+++||+++++...   .......+.+++++|++..+++++.++.+.  +||......   .....|. 
T Consensus       195 ~~~~~~~~~d~~v~i~d~~~~~~~~---~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~--i~d~~~~~~---~~~~~~~-  265 (337)
T d1gxra_         195 GTKLWTGGLDNTVRSWDLREGRQLQ---QHDFTSQIFSLGYCPTGEWLAVGMESSNVE--VLHVNKPDK---YQLHLHE-  265 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEE---EEECSSCEEEEEECTTSSEEEEEETTSCEE--EEETTSSCE---EEECCCS-
T ss_pred             ccccccccccccccccccccceeec---ccccccceEEEEEcccccccceeccccccc--ccccccccc---ccccccc-
Confidence            6789999999999999998764321   123345678999999999999999999865  588754322   2222222 


Q ss_pred             cCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCC
Q 019384          236 SEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPH  315 (342)
Q Consensus       236 ~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~  315 (342)
                              .+|.+++|+|++++|++|+.||+|++||..+++.+..+ +|...|.+++|+|||++||+|+.+.        
T Consensus       266 --------~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~--------  328 (337)
T d1gxra_         266 --------SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDK--------  328 (337)
T ss_dssp             --------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTS--------
T ss_pred             --------cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCC--------
Confidence                    36999999999999999999999999999998887765 4778999999999999999998765        


Q ss_pred             CCCcEEEEEc
Q 019384          316 EPDAIFVRSV  325 (342)
Q Consensus       316 ~~~~~~~~~~  325 (342)
                         .|.+|++
T Consensus       329 ---~I~vWdl  335 (337)
T d1gxra_         329 ---KATVYEV  335 (337)
T ss_dssp             ---CEEEEEE
T ss_pred             ---eEEEEEE
Confidence               5888875

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-38  Score=283.71  Aligned_cols=292  Identities=17%  Similarity=0.203  Sum_probs=217.0

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee-------------------ecCCceEEEEEeCCCC-eEE
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF-------------------MHGGPVLDCCFHDDSS-GFS   76 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~-------------------~h~~~V~~~~~~~~~~-~~s   76 (342)
                      +|.+.|++|+|||||++||||+ |++|+|||+.++++...+                   .|...|.+++|++++. +++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            5899999999999999999986 999999999876543322                   3677899999997765 468


Q ss_pred             EecCCcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEE---
Q 019384           77 ASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSL---  152 (342)
Q Consensus        77 ~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~---  152 (342)
                      |+.|+.|++|+...++. ..+.+|...|.++++++++..+++++.++.|++||.++...  .....   .......+   
T Consensus       139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~---~~~~~~~~~~~  213 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC--SLTLS---IEDGVTTVAVS  213 (388)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--EEEEE---CSSCEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccc--ccccc---ccccccccccc
Confidence            99999999999988773 45678999999999999999999999999999999875322  11111   11222222   


Q ss_pred             eccCCeEEEEEcCCeEEEEeCCCCCCccccc-----ccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccc
Q 019384          153 SLVGNRLVVATAGRHVNVYDLRNMSQPEQRR-----ESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK  227 (342)
Q Consensus       153 s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~  227 (342)
                      ..+++.+++++.|+.|++||+++........     .......+.++.++|+++.+++++.|+.+.  +||+........
T Consensus       214 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~--iwd~~~~~~~~~  291 (388)
T d1erja_         214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK--LWNLQNANNKSD  291 (388)
T ss_dssp             STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE--EEEC--------
T ss_pred             CCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEE--EEeccCCccccc
Confidence            2356789999999999999998764321111     112234578899999999999999999765  588754332211


Q ss_pred             ceeee-EEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEE------ECCCCCEE
Q 019384          228 YAFKC-HRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALS------FSRDGRLL  300 (342)
Q Consensus       228 ~~~~~-h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~------~spdg~~l  300 (342)
                      ..... .........+...|.+++|+|++++|++|+.||+|++||+++++++.++++|.+.|.+++      |+||+.+|
T Consensus       292 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l  371 (388)
T d1erja_         292 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF  371 (388)
T ss_dssp             -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred             cccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEE
Confidence            10000 000000011223689999999999999999999999999999999999999999999997      46799999


Q ss_pred             EEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          301 AVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       301 as~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      |+|+.+.           .|.+|++++
T Consensus       372 ~s~s~Dg-----------~I~iW~~~k  387 (388)
T d1erja_         372 ATGSGDC-----------KARIWKYKK  387 (388)
T ss_dssp             EEEETTS-----------EEEEEEEEE
T ss_pred             EEEeCCC-----------EEEEEeeee
Confidence            9998776           599998865

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-36  Score=263.95  Aligned_cols=276  Identities=17%  Similarity=0.197  Sum_probs=214.9

Q ss_pred             CCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc
Q 019384           15 GNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK   92 (342)
Q Consensus        15 ~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~   92 (342)
                      -.+|.+.|++|+|+|++++|||||.||+|+|||+.++++.. ...|.+.|.+++|++++.. ++++.++.+..|+.....
T Consensus        13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE   92 (317)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC
T ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccc
Confidence            36899999999999999999999999999999998876544 4579999999999977765 577888889999887766


Q ss_pred             e-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEE
Q 019384           93 E-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVY  171 (342)
Q Consensus        93 ~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iw  171 (342)
                      . ..+.+|...+.++.+++++..+++++.|+.+++||++++..  ...+..+......+.++.+++.+++++.|+.|++|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~  170 (317)
T d1vyhc1          93 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC--VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW  170 (317)
T ss_dssp             EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccccccccccceeeeccCCCceEEeeccCcceeEeeccccee--eeEEccCCCcceeeecccCCCEEEEEeCCCeEEEE
Confidence            3 45678999999999999999999999999999999976432  22233333333344455567789999999999999


Q ss_pred             eCCCCCCcccccccccceeeEEEEEee--------------------CCceEEEEccCCeEEEEEeechhhhhcccceee
Q 019384          172 DLRNMSQPEQRRESSLKYQTRCVRCYP--------------------NGTGYALSSVEGRVAMEFFDLSEASQAKKYAFK  231 (342)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~v~~~~--------------------~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~  231 (342)
                      ++.+........  .....+.++.+.|                    .+..+++++.|+.+  ++||......  ...+.
T Consensus       171 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i--~~~~~~~~~~--~~~~~  244 (317)
T d1vyhc1         171 VVATKECKAELR--EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI--KMWDVSTGMC--LMTLV  244 (317)
T ss_dssp             ETTTCCEEEEEC--CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE--EEEETTTTEE--EEEEE
T ss_pred             eeccceeeEEEe--cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEE--EEEECCCCcE--EEEEe
Confidence            998764322111  1122334444443                    34457788888876  4588864432  22334


Q ss_pred             eEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          232 CHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       232 ~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      +|.         .+|.+++|+|++++|++|+.||+|+|||+++++.+..+.+|...|++++|+||+++|++|+.+.
T Consensus       245 ~~~---------~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg  311 (317)
T d1vyhc1         245 GHD---------NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ  311 (317)
T ss_dssp             CCS---------SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTS
T ss_pred             CCC---------CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            443         2699999999999999999999999999999999999999999999999999999999998765

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.3e-35  Score=256.84  Aligned_cols=295  Identities=26%  Similarity=0.466  Sum_probs=210.6

Q ss_pred             cCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc----eeeeeeecCCceEEEEEeCC-C-CeEEEecCCcEEEE
Q 019384           13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN----VLRGEFMHGGPVLDCCFHDD-S-SGFSASADHTVRRL   86 (342)
Q Consensus        13 ~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~----~~~~~~~h~~~V~~~~~~~~-~-~~~s~s~D~~i~~w   86 (342)
                      ++-+.|+++|++|+|+|++++|||||.||+|||||+..+    .+.....|.++|.+++|+++ + .+++|+.|+.+++|
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence            566899999999999999999999999999999998643    34555679999999999854 3 45789999999999


Q ss_pred             EeccCcee-ec-ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeee----cCCCCcEEEEeccCCeEE
Q 019384           87 VFSHGKED-IL-GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGT----YPQPERVYSLSLVGNRLV  160 (342)
Q Consensus        87 ~~~~~~~~-~~-~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~----~~~~~~v~~~s~~~~~~~  160 (342)
                      ++...... .. ..+........+.++...+++++.|+++++||++............    .........+...++.++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI  164 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEE
T ss_pred             ecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCcee
Confidence            99876633 22 2333444555666778899999999999999986432211111111    112233455667788999


Q ss_pred             EEEcCCeEEEEeCCCCCCccccc-ccccceeeEEEEEe-eCCceEEEEccCCeEEEEEeechhhhh--cccceeeeEEec
Q 019384          161 VATAGRHVNVYDLRNMSQPEQRR-ESSLKYQTRCVRCY-PNGTGYALSSVEGRVAMEFFDLSEASQ--AKKYAFKCHRKS  236 (342)
Q Consensus       161 ~~s~d~~v~iwd~~~~~~~~~~~-~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~--~~~~~~~~h~~~  236 (342)
                      +++.|+.|++||++......... .........+.... .++..+++++.++.+.++.++......  .....+..+...
T Consensus       165 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~  244 (342)
T d1yfqa_         165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN  244 (342)
T ss_dssp             EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred             eecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeec
Confidence            99999999999998764322111 11222234444444 456778889999988775555432111  111222233333


Q ss_pred             CCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccc
Q 019384          237 EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTF  308 (342)
Q Consensus       237 ~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~  308 (342)
                      .....+.++|++|+|+|++++|+||+.||+|+|||+++++.+.++..+ ..+..++|+|+|++||++++++.
T Consensus       245 ~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~  315 (342)
T d1yfqa_         245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDT  315 (342)
T ss_dssp             TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTH
T ss_pred             cCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCc
Confidence            334455668999999999999999999999999999999998887654 34567889999999999998763

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-34  Score=254.87  Aligned_cols=276  Identities=17%  Similarity=0.230  Sum_probs=211.6

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCc-
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGK-   92 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~-   92 (342)
                      .+|.+.|++|+|+|++++||||+.||+|+|||+.+++... ...|.+.|.+++|++++.. ++++.|+.+++|+..... 
T Consensus        52 ~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~  131 (340)
T d1tbga_          52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG  131 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCS
T ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccccccc
Confidence            5899999999999999999999999999999998876554 4579999999999977664 689999999999976654 


Q ss_pred             ----eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeE
Q 019384           93 ----EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHV  168 (342)
Q Consensus        93 ----~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v  168 (342)
                          ...+.+|........... +..+.....|...+.|+......  ......................+++++.|+.|
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  208 (340)
T d1tbga_         132 NVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQ--TTTFTGHTGDVMSLSLAPDTRLFVSGACDASA  208 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEE--EEEEECCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred             ccccceeccccccccccccccc-ccccccccccccccccccccccc--cccccccceeEeeeccccccceeEEeecCceE
Confidence                224567777776666554 56788889999999998754221  11111111222223334455688999999999


Q ss_pred             EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384          169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA  248 (342)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  248 (342)
                      ++||+++...... . ......+.+++++|+++.+++++.|+.+.  +||.........+...         .+..+|.+
T Consensus       209 ~i~d~~~~~~~~~-~-~~h~~~i~~v~~~p~~~~l~s~s~d~~i~--~~~~~~~~~~~~~~~~---------~~~~~i~~  275 (340)
T d1tbga_         209 KLWDVREGMCRQT-F-TGHESDINAICFFPNGNAFATGSDDATCR--LFDLRADQELMTYSHD---------NIICGITS  275 (340)
T ss_dssp             EEEETTTTEEEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSCEE--EEETTTTEEEEEECCT---------TCCSCEEE
T ss_pred             EEEECCCCcEEEE-E-eCCCCCeEEEEECCCCCEEEEEeCCCeEE--EEeecccccccccccc---------cccCceEE
Confidence            9999987643221 1 22345678999999999999999999875  5887544322222111         12236899


Q ss_pred             EEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          249 IAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       249 v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      ++|+|++.+|++|+.||+|++||+.+++.+..+.+|.+.|++++|+|||++|++|+.+.
T Consensus       276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg  334 (340)
T d1tbga_         276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             EEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             EEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCC
Confidence            99999999999999999999999999999999999999999999999999999998765

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.4e-35  Score=255.09  Aligned_cols=281  Identities=15%  Similarity=0.152  Sum_probs=210.6

Q ss_pred             CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee--ecCCceEEEEEeCCCCeEEEecCCcEEEEEeccC
Q 019384           14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF--MHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHG   91 (342)
Q Consensus        14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~--~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~   91 (342)
                      +..+|.+.|++|+|+|++++||||+.||+|+|||+.+++....+  .|.+.|.+++|++++.+++++.|+.+++|+....
T Consensus         7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~   86 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGS   86 (299)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSS
T ss_pred             EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCc
Confidence            45789999999999999999999999999999999887755543  5899999999999999999999999999998665


Q ss_pred             cee----ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCe
Q 019384           92 KED----ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRH  167 (342)
Q Consensus        92 ~~~----~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~  167 (342)
                      ...    ....|...+.+++|++++..++++ .++.+++|+....      ...........++++.+++.+++++.|+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~~------~~~~~~~~~~~~~~s~~~~~l~~g~~dg~  159 (299)
T d1nr0a2          87 GVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGKL------TEVPISYNSSCVALSNDKQFVAVGGQDSK  159 (299)
T ss_dssp             SSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTEE------EEEECSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             ccccccccccccccccccccccccccccccc-ccccccccccccc------ccccccccccccccccccccccccccccc
Confidence            422    234577889999999998766654 5678999995421      11112233445566777789999999999


Q ss_pred             EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcc-cceeeeEEecCCCCceeeee
Q 019384          168 VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAK-KYAFKCHRKSEAGRDIVYPV  246 (342)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~-~~~~~~h~~~~~~~~~~~~v  246 (342)
                      |++||+++...... ........+.+++++|+++.+++++.++.+  ++||........ ...+..|.         .+|
T Consensus       160 i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i--~~~~~~~~~~~~~~~~~~~h~---------~~v  227 (299)
T d1nr0a2         160 VHVYKLSGASVSEV-KTIVHPAEITSVAFSNNGAFLVATDQSRKV--IPYSVANNFELAHTNSWTFHT---------AKV  227 (299)
T ss_dssp             EEEEEEETTEEEEE-EEEECSSCEEEEEECTTSSEEEEEETTSCE--EEEEGGGTTEESCCCCCCCCS---------SCE
T ss_pred             cccccccccccccc-cccccccccccccccccccccccccccccc--ccccccccccccccccccccc---------ccc
Confidence            99999986532211 112234567899999999999999999976  458876543221 12223332         369


Q ss_pred             eEEEEcCCCCeEEEecCCCeEEEEeCCCcee--eeccCC-CCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEE
Q 019384          247 NAIAFHPIYGTFATGGCDGFVNVWDGNNKKR--LYQYSK-YPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVR  323 (342)
Q Consensus       247 ~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~--~~~~~~-~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~  323 (342)
                      ++++|+|++.+|++|+.||+|++||++++..  +..... +...|.++.| +++++|++++.+.           .|.+|
T Consensus       228 ~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~-----------~i~iW  295 (299)
T d1nr0a2         228 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDS-----------NIKFW  295 (299)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTS-----------CEEEE
T ss_pred             ccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCC-----------EEEEE
Confidence            9999999999999999999999999886543  222333 4456666655 6778899888665           48889


Q ss_pred             Ec
Q 019384          324 SV  325 (342)
Q Consensus       324 ~~  325 (342)
                      ++
T Consensus       296 dl  297 (299)
T d1nr0a2         296 NV  297 (299)
T ss_dssp             EC
T ss_pred             ec
Confidence            76

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-34  Score=261.51  Aligned_cols=248  Identities=13%  Similarity=0.112  Sum_probs=185.3

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce--e-eeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCce
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV--L-RGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~--~-~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~   93 (342)
                      .-+.|++++|+|++++||+|+.||+|+|||..+++  . ....+|.++|.+++|+|++. +++++.|+++++|++..+..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            34569999999999999999999999999997764  2 23457999999999997765 56899999999999987653


Q ss_pred             ---eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCCeE
Q 019384           94 ---DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHV  168 (342)
Q Consensus        94 ---~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~~v  168 (342)
                         ..+.+|...|.+++|+|+++.|++|+.|++|++|+++..............+...+.++.+  ++..+++++.|++|
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence               3457899999999999999999999999999999876543321111111123344555554  56689999999999


Q ss_pred             EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384          169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA  248 (342)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  248 (342)
                      ++||+.............                              |+..............         +...|.+
T Consensus       166 ~v~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~---------~~~~v~~  206 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTP------------------------------WGSKMPFGELMFESSS---------SCGWVHG  206 (371)
T ss_dssp             EEEECCCTTTSCCCCCBT------------------------------TBSCCCTTCEEEECCC---------CSSCEEE
T ss_pred             EEEeeccCcccccccccc------------------------------ccccccceeeeeeccC---------ccCcEEE
Confidence            999987643211100000                              0000000000011111         2235889


Q ss_pred             EEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEE
Q 019384          249 IAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       249 v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s  304 (342)
                      ++|+|++++|++++.|++|++||.+++..+..+..|..+|.+++|+|||++||+|+
T Consensus       207 ~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~  262 (371)
T d1k8kc_         207 VCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH  262 (371)
T ss_dssp             EEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET
T ss_pred             EEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc
Confidence            99999999999999999999999999888988999999999999999999998764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-33  Score=249.32  Aligned_cols=283  Identities=11%  Similarity=0.061  Sum_probs=208.3

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCce---
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKE---   93 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~---   93 (342)
                      .+.+..++++|+|+.||.+. ++.|.+||+.+.... ...+|.+.|++++|+|++.+ ++|+.|++|++|++.....   
T Consensus        17 r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~   95 (311)
T d1nr0a1          17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK   95 (311)
T ss_dssp             TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred             CCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccc
Confidence            34567889999999999875 667999999876544 34579999999999987765 5899999999999988763   


Q ss_pred             eecccCCcceeEEEEeCCCCEEEEeeCC--CcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCC-eEEEEEcCCeE
Q 019384           94 DILGKHDAPVRCIEYSYAAGQVITGSWD--KSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGN-RLVVATAGRHV  168 (342)
Q Consensus        94 ~~~~~h~~~V~~~~~~~~~~~l~sgs~D--~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~-~~~~~s~d~~v  168 (342)
                      ..+..|...|.+++|+|++++|++++.+  ..+++||.++....  ..+..  +...+.++.+  +++ .+++++.|+.|
T Consensus        96 ~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~--~~l~~--h~~~v~~v~~~~~~~~~l~sgs~d~~i  171 (311)
T d1nr0a1          96 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN--GNLTG--QARAMNSVDFKPSRPFRIISGSDDNTV  171 (311)
T ss_dssp             EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBC--BCCCC--CSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred             cccccccCcccccccccccccccccccccccccccccccccccc--ccccc--cccccccccccccceeeeccccccccc
Confidence            3467899999999999999999988764  56999998754331  22222  2344555544  444 57889999999


Q ss_pred             EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE
Q 019384          169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA  248 (342)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~  248 (342)
                      ++||+++.+.....  ......+.++.++|+++.+++++.|+.+.  +||.........+....    .....|..+|.+
T Consensus       172 ~i~d~~~~~~~~~~--~~~~~~i~~v~~~p~~~~l~~~~~d~~v~--~~d~~~~~~~~~~~~~~----~~~~~h~~~V~~  243 (311)
T d1nr0a1         172 AIFEGPPFKFKSTF--GEHTKFVHSVRYNPDGSLFASTGGDGTIV--LYNGVDGTKTGVFEDDS----LKNVAHSGSVFG  243 (311)
T ss_dssp             EEEETTTBEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEE--EEETTTCCEEEECBCTT----SSSCSSSSCEEE
T ss_pred             cccccccccccccc--ccccccccccccCcccccccccccccccc--ccccccccccccccccc----cccccccccccc
Confidence            99999876432221  12344678999999999999999999875  58876443222111100    001123346999


Q ss_pred             EEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCc-ceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEc
Q 019384          249 IAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPT-SIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSV  325 (342)
Q Consensus       249 v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~-~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~  325 (342)
                      ++|+|++++|++|+.||+|+|||.+++++++++..|.. ....+.+.+++.+|++++.++           .|.+|+.
T Consensus       244 ~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG-----------~i~~wd~  310 (311)
T d1nr0a1         244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG-----------FINFVNP  310 (311)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC-----------CEEEEET
T ss_pred             cccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCC-----------EEEEEeC
Confidence            99999999999999999999999999999888776543 334445555666788888766           4777765

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-31  Score=236.45  Aligned_cols=282  Identities=18%  Similarity=0.215  Sum_probs=198.4

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCcee
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKED   94 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~   94 (342)
                      .+|.+.|.+ +++++|++|||||.||+|+|||+.++++.. ..+|.+.|.+++|+++ .+++++.|+.+++|+.......
T Consensus        13 ~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~-~l~s~s~D~~~~~~~~~~~~~~   90 (342)
T d2ovrb2          13 KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-IIISGSTDRTLKVWNAETGECI   90 (342)
T ss_dssp             ECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT-EEEEEETTSCEEEEETTTTEEE
T ss_pred             CCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC-ccccceecccccccccccccce
Confidence            589999876 467788999999999999999998877554 4579999999999864 7789999999999997654321


Q ss_pred             e-cccCCcc--------------------------------------eeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCc
Q 019384           95 I-LGKHDAP--------------------------------------VRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQ  135 (342)
Q Consensus        95 ~-~~~h~~~--------------------------------------V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~  135 (342)
                      . ...+...                                      .......+....+++++.|+.|++||.+.... 
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-  169 (342)
T d2ovrb2          91 HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC-  169 (342)
T ss_dssp             EEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEE-
T ss_pred             ecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccccee-
Confidence            0 0000000                                      01122233455788889999999999764221 


Q ss_pred             ceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEE
Q 019384          136 ERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAME  215 (342)
Q Consensus       136 ~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~  215 (342)
                       .  .....+...+..+.+++..+++++.|+.|++||++..+.....  ......+.++  .++++.+++++.|+.+.  
T Consensus       170 -~--~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~--~~~~~~v~~~--~~~~~~l~s~s~d~~i~--  240 (342)
T d2ovrb2         170 -L--HTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL--TGHQSLTSGM--ELKDNILVSGNADSTVK--  240 (342)
T ss_dssp             -E--EEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEE--CCCCSCEEEE--EEETTEEEEEETTSCEE--
T ss_pred             -e--EEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEe--cccccceeEE--ecCCCEEEEEcCCCEEE--
Confidence             1  1112344566778888899999999999999999876432221  1222234444  44567899999999865  


Q ss_pred             EeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeecc-----CCCCcceEE
Q 019384          216 FFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQY-----SKYPTSIAA  290 (342)
Q Consensus       216 ~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~-----~~~~~~V~~  290 (342)
                      +||........  .+..+      ..+...+.++.++  +.++++|+.||+|+|||+++++.++++     .+|...|++
T Consensus       241 iwd~~~~~~~~--~~~~~------~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~  310 (342)
T d2ovrb2         241 IWDIKTGQCLQ--TLQGP------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR  310 (342)
T ss_dssp             EEETTTCCEEE--EECST------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred             EEecccccccc--ccccc------ceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEE
Confidence            58875432211  11111      1222345666664  578999999999999999999887655     357788999


Q ss_pred             EEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384          291 LSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       291 v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                      ++|+||+.+||+|+.++.++.+       |.+|...
T Consensus       311 v~~s~~~~~la~g~~dGt~~~~-------l~~~Df~  339 (342)
T d2ovrb2         311 IRASNTKLVCAVGSRNGTEETK-------LLVLDFD  339 (342)
T ss_dssp             EEECSSEEEEEEECSSSSSCCE-------EEEEECC
T ss_pred             EEECCCCCEEEEEeCCCCCeeE-------EEEEeCC
Confidence            9999999999999888766665       8888764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-31  Score=234.30  Aligned_cols=269  Identities=18%  Similarity=0.186  Sum_probs=187.8

Q ss_pred             CCCCCCe-EEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce
Q 019384           16 NPPSDGI-SNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE   93 (342)
Q Consensus        16 ~~~~~~V-~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~   93 (342)
                      .+|.+.| ++++|  ++++||||+.||+|+|||+.+++++. ..+|.++|.+++|++++.+++|+.|+++++|++.....
T Consensus         9 ~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~   86 (355)
T d1nexb2           9 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCC   86 (355)
T ss_dssp             ECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEE
T ss_pred             CCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccccc
Confidence            4788886 56655  57899999999999999998877554 45799999999999988889999999999999987764


Q ss_pred             ee---cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcce---------------------------------
Q 019384           94 DI---LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQER---------------------------------  137 (342)
Q Consensus        94 ~~---~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~---------------------------------  137 (342)
                      ..   ...+......+.+.+++..+++++.|++|++||+++......                                 
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  166 (355)
T d1nexb2          87 THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT  166 (355)
T ss_dssp             EEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEE
T ss_pred             ccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccc
Confidence            32   223444456677778888889999999999998764221000                                 


Q ss_pred             ------eee-------------------eec-CCCCcE--EEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccce
Q 019384          138 ------TLV-------------------GTY-PQPERV--YSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKY  189 (342)
Q Consensus       138 ------~~~-------------------~~~-~~~~~v--~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~  189 (342)
                            ...                   ... .....+  ..++..++.+++++.|+.|++||++++......  .....
T Consensus       167 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~--~~h~~  244 (355)
T d1nexb2         167 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL--QGHTA  244 (355)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE--CCCSS
T ss_pred             cccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc--ccccc
Confidence                  000                   000 011111  223445568899999999999999886432221  22333


Q ss_pred             eeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeE-EEEcCCCCeEEEecCCCeEE
Q 019384          190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNA-IAFHPIYGTFATGGCDGFVN  268 (342)
Q Consensus       190 ~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~-v~~sp~~~~l~sgs~Dg~I~  268 (342)
                      .+.+++++  ++.+++++.|+.+  ++||..+..    ..+..|..         .+.+ +++++++.+|++| .|++|+
T Consensus       245 ~v~~~~~~--~~~l~~~~~dg~i--~iwd~~~~~----~~~~~~~~---------~~~~~~~~~~~~~~l~~g-~d~~i~  306 (355)
T d1nexb2         245 LVGLLRLS--DKFLVSAAADGSI--RGWDANDYS----RKFSYHHT---------NLSAITTFYVSDNILVSG-SENQFN  306 (355)
T ss_dssp             CCCEEEEC--SSEEEEECTTSEE--EEEETTTCC----EEEEEECT---------TCCCCCEEEECSSEEEEE-ETTEEE
T ss_pred             cccccccc--cceeeeeeccccc--ccccccccc----eecccccC---------CceEEEEEcCCCCEEEEE-eCCEEE
Confidence            45666654  5689999999976  469985432    22334432         2333 3567777777666 489999


Q ss_pred             EEeCCCceeee-ccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          269 VWDGNNKKRLY-QYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       269 iWd~~~~~~~~-~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      |||+++++++. .+.+|...|++++|+|+ .++++++.++
T Consensus       307 vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg  345 (355)
T d1nexb2         307 IYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDG  345 (355)
T ss_dssp             EEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSS
T ss_pred             EEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCC
Confidence            99999998875 56789999999999987 4666666555

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.5e-31  Score=233.75  Aligned_cols=244  Identities=12%  Similarity=0.153  Sum_probs=178.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce--e-eeeeecCCceEEEEEeCCCCe-EEEec--CCcEEEEEec
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV--L-RGEFMHGGPVLDCCFHDDSSG-FSASA--DHTVRRLVFS   89 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~--~-~~~~~h~~~V~~~~~~~~~~~-~s~s~--D~~i~~w~~~   89 (342)
                      .+|.+.|++++|+|+|++||+|+.||+|+|||+.++.  . .....|.++|.+++|++++.. ++++.  +..+++|+++
T Consensus        55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~  134 (311)
T d1nr0a1          55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD  134 (311)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred             cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccc
Confidence            5799999999999999999999999999999997753  2 234569999999999987765 46654  4558999998


Q ss_pred             cCce-eecccCCcceeEEEEeCCCCE-EEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCe
Q 019384           90 HGKE-DILGKHDAPVRCIEYSYAAGQ-VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRH  167 (342)
Q Consensus        90 ~~~~-~~~~~h~~~V~~~~~~~~~~~-l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~  167 (342)
                      +++. ..+.+|...|++++|+|+++. |++|+.|++|++||+++...  ......+......+.++++++.+++++.|+.
T Consensus       135 ~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~--~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~  212 (311)
T d1nr0a1         135 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF--KSTFGEHTKFVHSVRYNPDGSLFASTGGDGT  212 (311)
T ss_dssp             TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccccccccceeeeccccccccccccccccccc--ccccccccccccccccCcccccccccccccc
Confidence            8763 567889999999999998874 78999999999999875321  1222222222233344456678999999999


Q ss_pred             EEEEeCCCCCCccccc-----ccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCce
Q 019384          168 VNVYDLRNMSQPEQRR-----ESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDI  242 (342)
Q Consensus       168 v~iwd~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~  242 (342)
                      |++||+++........     ...+...+.+++++|+++.+++++.|+.+  ++||.++.+..  ..+..|...      
T Consensus       213 v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v--~iwd~~t~~~~--~~l~~~~~~------  282 (311)
T d1nr0a1         213 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI--KIWNVATLKVE--KTIPVGTRI------  282 (311)
T ss_dssp             EEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEE--EEEETTTTEEE--EEEECCSSG------
T ss_pred             ccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeE--EEEECCCCcEE--EEEECCCCc------
Confidence            9999998764321111     11223457899999999999999999976  56998654322  223333211      


Q ss_pred             eeeeeEEEEcCCCCeEEEecCCCeEEEEeCC
Q 019384          243 VYPVNAIAFHPIYGTFATGGCDGFVNVWDGN  273 (342)
Q Consensus       243 ~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~  273 (342)
                        ....+.+.+++..|++++.||.|++||.+
T Consensus       283 --~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         283 --EDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             --GGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             --cceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence              12233444556789999999999999964

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4e-30  Score=228.93  Aligned_cols=239  Identities=16%  Similarity=0.180  Sum_probs=180.1

Q ss_pred             eeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce------eecccCCcceeEEEEeCCCCEEEEeeCCCcEE
Q 019384           52 VLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE------DILGKHDAPVRCIEYSYAAGQVITGSWDKSLK  125 (342)
Q Consensus        52 ~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~------~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~  125 (342)
                      +.+..+.|...|.+++|+++++.+..+.|+.|++||+.+...      ....+|.+.|.+++|+|++++|++|+.|++|+
T Consensus        43 ~~~~~~~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~  122 (337)
T d1gxra_          43 RQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS  122 (337)
T ss_dssp             EEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred             eEEEECCCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccc
Confidence            345566899999999999888766445589999999976542      12457999999999999999999999999999


Q ss_pred             EEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEE
Q 019384          126 CWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYAL  205 (342)
Q Consensus       126 iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  205 (342)
                      +||+..........+..+........++.++..+++++.++.|++||+++.+....  .......+.++++++++..+++
T Consensus       123 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~--~~~~~~~v~~l~~s~~~~~~~~  200 (337)
T d1gxra_         123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ--FQGHTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccc
Confidence            99987544322222222222222334555666899999999999999987643221  2223456788999999999999


Q ss_pred             EccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCC
Q 019384          206 SSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYP  285 (342)
Q Consensus       206 ~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~  285 (342)
                      ++.++.+.  +||.+.......     +.       +..+|.+++|+|++++|++|+.|+.|++||.+++... ....|.
T Consensus       201 ~~~d~~v~--i~d~~~~~~~~~-----~~-------~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~  265 (337)
T d1gxra_         201 GGLDNTVR--SWDLREGRQLQQ-----HD-------FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHE  265 (337)
T ss_dssp             EETTSEEE--EEETTTTEEEEE-----EE-------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCS
T ss_pred             cccccccc--ccccccceeecc-----cc-------cccceEEEEEcccccccceeccccccccccccccccc-cccccc
Confidence            99999764  599865432211     11       1236899999999999999999999999999887654 456789


Q ss_pred             cceEEEEECCCCCEEEEEEecc
Q 019384          286 TSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       286 ~~V~~v~~spdg~~las~s~~~  307 (342)
                      ..|.+++|+|||++|++++.+.
T Consensus       266 ~~i~~v~~s~~g~~l~s~s~Dg  287 (337)
T d1gxra_         266 SCVLSLKFAYCGKWFVSTGKDN  287 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTS
T ss_pred             cccceEEECCCCCEEEEEeCCC
Confidence            9999999999999999998654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=6.8e-31  Score=228.08  Aligned_cols=265  Identities=15%  Similarity=0.171  Sum_probs=198.6

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceee
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDI   95 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~   95 (342)
                      .+|.+.|++|+|+|    |+||+.||+|++||+.++    ...|.+.|.++.+.++..+++++.|+++++|+.....   
T Consensus        10 ~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~----~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~---   78 (287)
T d1pgua2          10 SGHNKGITALTVNP----LISGSYDGRIMEWSSSSM----HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE---   78 (287)
T ss_dssp             CCCSSCEEEEETTT----TEEEETTSCEEETTTTEE----ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE---
T ss_pred             CCCCCceEEEEECc----EEEEeCCCeEEEEECCCC----CCCCCCCEEEEEecCCCeEEEEeeccccccccccccc---
Confidence            68999999999987    999999999999998754    2469999999999988889999999999999876532   


Q ss_pred             cccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCC-eEEEEeCC
Q 019384           96 LGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGR-HVNVYDLR  174 (342)
Q Consensus        96 ~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~-~v~iwd~~  174 (342)
                         +...+.++++.+++..+++ +.++.+.+|+..+...     ............++++++.+++++.++ .+++|++.
T Consensus        79 ---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~  149 (287)
T d1pgua2          79 ---FGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDI-----IKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLS  149 (287)
T ss_dssp             ---CSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCE-----EEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETT
T ss_pred             ---cccceeeeeeccCCceEEE-eecccceeeeccceee-----eeeccccceeeeeeccCcceeeeccccceeeeeecc
Confidence               3345778888887765555 4566788888764332     122223344567888888888887775 69999987


Q ss_pred             CCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC
Q 019384          175 NMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI  254 (342)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~  254 (342)
                      ...... .........+.+++++|++..+++++.++.+.  +||........ ..+..|.         .+|.+++|+|.
T Consensus       150 ~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~--i~d~~~~~~~~-~~~~~h~---------~~v~~~~~~p~  216 (287)
T d1pgua2         150 DLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVMGKIL--LYDLQSREVKT-SRWAFRT---------SKINAISWKPA  216 (287)
T ss_dssp             EEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEE--EEETTTTEEEE-CCSCCCS---------SCEEEEEECCC
T ss_pred             ccceee-eeeeccCCceeEEEeccCcccccccccccccc--ceeeccccccc-ccccccc---------cccceeeeccc
Confidence            543221 12223445688999999999999999999875  59886432211 1122332         36889999875


Q ss_pred             ----------CCeEEEecCCCeEEEEeCCC-ceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEE
Q 019384          255 ----------YGTFATGGCDGFVNVWDGNN-KKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVR  323 (342)
Q Consensus       255 ----------~~~l~sgs~Dg~I~iWd~~~-~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~  323 (342)
                                +.+|++|+.|++|+|||+++ .+.+..+.+|...|++++|+||++ |++++.+.           .|.+|
T Consensus       217 ~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~-----------~v~iW  284 (287)
T d1pgua2         217 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADA-----------CIKRW  284 (287)
T ss_dssp             C------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTS-----------CEEEE
T ss_pred             ccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECCC-----------eEEEE
Confidence                      46899999999999999876 556777889999999999999975 67777655           58888


Q ss_pred             Ec
Q 019384          324 SV  325 (342)
Q Consensus       324 ~~  325 (342)
                      ++
T Consensus       285 ~i  286 (287)
T d1pgua2         285 NV  286 (287)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-30  Score=236.70  Aligned_cols=293  Identities=14%  Similarity=0.163  Sum_probs=197.2

Q ss_pred             cCCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc-------eeeeeeecCCceEEEEEe----CC---C-CeEEE
Q 019384           13 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN-------VLRGEFMHGGPVLDCCFH----DD---S-SGFSA   77 (342)
Q Consensus        13 ~~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~-------~~~~~~~h~~~V~~~~~~----~~---~-~~~s~   77 (342)
                      .....|.+.|++|++++  ++|+|+|.|++|||||....       .......|...+..+...    .+   . .++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            34578999999999875  69999999999999997542       123334565554333321    11   1 23588


Q ss_pred             ecCCcEEEEEeccCcee---------e--cccCCcceeEEEEeCCC-----CEEEEeeCCCcEEEEcCCCCCCcc-----
Q 019384           78 SADHTVRRLVFSHGKED---------I--LGKHDAPVRCIEYSYAA-----GQVITGSWDKSLKCWDPRGASGQE-----  136 (342)
Q Consensus        78 s~D~~i~~w~~~~~~~~---------~--~~~h~~~V~~~~~~~~~-----~~l~sgs~D~~I~iWd~~~~~~~~-----  136 (342)
                      +.|+.+++|++......         .  ...+...+..++|.++.     .++++++.|++|++||+.......     
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            89999999998654311         1  12345667888887753     578999999999999974221100     


Q ss_pred             -----eeeeee----cCCCCcEEEEeccCC-eEEEEEcCCeEEEEeCCCCCCccccc----ccccceeeEEEEEeeCCce
Q 019384          137 -----RTLVGT----YPQPERVYSLSLVGN-RLVVATAGRHVNVYDLRNMSQPEQRR----ESSLKYQTRCVRCYPNGTG  202 (342)
Q Consensus       137 -----~~~~~~----~~~~~~v~~~s~~~~-~~~~~s~d~~v~iwd~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~  202 (342)
                           ......    ......+.+++++++ .+++++.|++|++||+.+++......    ...+...+.+++|+|+++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  245 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL  245 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccce
Confidence                 000000    011122334444433 78899999999999998764321111    1123446889999999999


Q ss_pred             EEEEccCCe-EEEEEeechhhhhcccceeeeEE--ecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeee
Q 019384          203 YALSSVEGR-VAMEFFDLSEASQAKKYAFKCHR--KSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLY  279 (342)
Q Consensus       203 ~~~~s~~~~-~~i~~~d~~~~~~~~~~~~~~h~--~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~  279 (342)
                      +++++.|++ ..+++||.........+....+.  ......+|...|++|+|+|++++|+||+.|++|+|||+++++++.
T Consensus       246 l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~  325 (393)
T d1sq9a_         246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT  325 (393)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             eeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEE
Confidence            999998875 34678998654322221111000  001112344579999999999999999999999999999999999


Q ss_pred             ccCCCCcceE----EEEECCCCCEEEEEEecc
Q 019384          280 QYSKYPTSIA----ALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       280 ~~~~~~~~V~----~v~~spdg~~las~s~~~  307 (342)
                      ++++|...|.    .++|+|+|..+++++.+.
T Consensus       326 ~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~  357 (393)
T d1sq9a_         326 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD  357 (393)
T ss_dssp             EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEE
T ss_pred             EECCcCCcccCCccEEEECCCCCEEEEcccce
Confidence            9999998875    589999999988776543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=6e-29  Score=224.36  Aligned_cols=256  Identities=11%  Similarity=0.093  Sum_probs=180.0

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceee---eeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccC
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLR---GEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHG   91 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~---~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~   91 (342)
                      .+|.+.|++|+|+|++++|+||+.|++|+|||+.++...   ....|...|.+++|+|++. +++++.|+++++|+++..
T Consensus        48 ~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~  127 (371)
T d1k8kc_          48 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE  127 (371)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT
T ss_pred             cCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecc
Confidence            478999999999999999999999999999999766432   3346889999999997765 568999999999998776


Q ss_pred             ce-----eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcc--------------eeeeeecCCCCcEEE-
Q 019384           92 KE-----DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQE--------------RTLVGTYPQPERVYS-  151 (342)
Q Consensus        92 ~~-----~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~--------------~~~~~~~~~~~~v~~-  151 (342)
                      ..     .....|...|.+++|+|++++|++|+.|++|++||........              ........+...+.+ 
T Consensus       128 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  207 (371)
T d1k8kc_         128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV  207 (371)
T ss_dssp             TTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE
T ss_pred             cccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEE
Confidence            52     2346799999999999999999999999999999976432110              001111223333444 


Q ss_pred             -EeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccccee
Q 019384          152 -LSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAF  230 (342)
Q Consensus       152 -~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~  230 (342)
                       ++++++.+++++.|++|++||+.+.......  ......+.+++|+|++..+++++ |+.+.++.|+...........+
T Consensus       208 ~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~  284 (371)
T d1k8kc_         208 CFSANGSRVAWVSHDSTVCLADADKKMAVATL--ASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRL  284 (371)
T ss_dssp             EECSSSSEEEEEETTTEEEEEEGGGTTEEEEE--ECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCC
T ss_pred             EeecccccccccccCCcceEEeeecccceeee--ecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeee
Confidence             4556678999999999999999876432221  12234578899999998777665 5666666666432211000000


Q ss_pred             ee----------------------------EEecCCCCceeeeeeEEEEcCCC----CeEEEecCCCeEEEEeCCC
Q 019384          231 KC----------------------------HRKSEAGRDIVYPVNAIAFHPIY----GTFATGGCDGFVNVWDGNN  274 (342)
Q Consensus       231 ~~----------------------------h~~~~~~~~~~~~v~~v~~sp~~----~~l~sgs~Dg~I~iWd~~~  274 (342)
                      ..                            .........|.+.|++++++|.+    ..|+|++.||+|+|||+++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         285 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence            00                            00000011244578999988754    3589999999999999865

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.2e-28  Score=209.31  Aligned_cols=268  Identities=17%  Similarity=0.214  Sum_probs=189.9

Q ss_pred             CCCCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee-eeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc
Q 019384           14 LGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG-EFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK   92 (342)
Q Consensus        14 ~~~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~-~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~   92 (342)
                      ...+|..+|+|++|  |+++|||||.||+|||||+.++++.. ..+|.+.|+++.|. +..+++|+.|+.+++|++..+.
T Consensus        10 ~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~-~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          10 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD-ERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC-SSEEEEEETTSCEEEEESSSCC
T ss_pred             ccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc-cceeeccccccccccccccccc
Confidence            34688899998765  78999999999999999998876554 45799999999984 4567899999999999998877


Q ss_pred             eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEe
Q 019384           93 EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYD  172 (342)
Q Consensus        93 ~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd  172 (342)
                      ......+... ....+.+....++++..++.+++||........ .......+...+..+.+....+++++.|+.+++||
T Consensus        87 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d  164 (293)
T d1p22a2          87 MLNTLIHHCE-AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT-LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWN  164 (293)
T ss_dssp             EEEEECCCCS-CEEEEECCTTEEEEEETTSCEEEEECSSSSCCE-EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred             cccccccccc-ccccccccccceeecccccceeEeecccccccc-ccccccccccccccceecccccccccCCCceeeec
Confidence            5433222222 223344566789999999999999987543321 11222234455667777788899999999999999


Q ss_pred             CCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384          173 LRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH  252 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  252 (342)
                      +++.+..... . .....+..  +.+++..+++++.|+.+.  +||........  ....|.         ..+.  .++
T Consensus       165 ~~~~~~~~~~-~-~~~~~v~~--~~~~~~~l~~~~~dg~i~--i~d~~~~~~~~--~~~~~~---------~~v~--~~~  225 (293)
T d1p22a2         165 TSTCEFVRTL-N-GHKRGIAC--LQYRDRLVVSGSSDNTIR--LWDIECGACLR--VLEGHE---------ELVR--CIR  225 (293)
T ss_dssp             TTTCCEEEEE-E-CCSSCEEE--EEEETTEEEEEETTSCEE--EEETTTCCEEE--EECCCS---------SCEE--EEE
T ss_pred             CCCCcEEEEE-c-cccccccc--ccCCCCeEEEecCCCEEE--EEecccceeee--eecccc---------eeee--ecc
Confidence            9886432211 1 11122333  344567889999999864  59886432221  112221         1243  456


Q ss_pred             CCCCeEEEecCCCeEEEEeCCC---------ceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          253 PIYGTFATGGCDGFVNVWDGNN---------KKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       253 p~~~~l~sgs~Dg~I~iWd~~~---------~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      +++.+|++|+.||+|++||+..         ...+..+.+|.+.|++++|  |+++|+++|.+.
T Consensus       226 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg  287 (293)
T d1p22a2         226 FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD  287 (293)
T ss_dssp             CCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS
T ss_pred             ccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCC
Confidence            7889999999999999999642         2356778899999999999  567899988766

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.8e-28  Score=221.04  Aligned_cols=261  Identities=18%  Similarity=0.237  Sum_probs=182.7

Q ss_pred             EEEEeCCCcEEEEECCCce-----eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCcee--------------
Q 019384           34 LLVSSWDKSVRLYDASANV-----LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKED--------------   94 (342)
Q Consensus        34 l~s~s~Dgti~vwd~~~~~-----~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~--------------   94 (342)
                      .+....++...+|+....+     +.....|.+.|++++|++++++++++.|++|++|++.+++..              
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~  110 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPE  110 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC---------
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeeccccccccccc
Confidence            4578889999999975432     344567999999999998888775566999999999876521              


Q ss_pred             -----ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEe--ccCCeEEEEEcCCe
Q 019384           95 -----ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLS--LVGNRLVVATAGRH  167 (342)
Q Consensus        95 -----~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s--~~~~~~~~~s~d~~  167 (342)
                           ....|...|++++|+|++++|++|+.|++|++||......  .....  .+...+.++.  .++..+++++.++.
T Consensus       111 ~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~--~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~  186 (388)
T d1erja_         111 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--VMILQ--GHEQDIYSLDYFPSGDKLVSGSGDRT  186 (388)
T ss_dssp             --------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEEC--CCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccc--ccccc--ccccccccccccccccccccccccee
Confidence                 1135778899999999999999999999999999865322  11122  2334454444  45668899999999


Q ss_pred             EEEEeCCCCCCcccccccccceeeEEEEEe-eCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384          168 VNVYDLRNMSQPEQRRESSLKYQTRCVRCY-PNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV  246 (342)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v  246 (342)
                      +++||+++.......   .......++.++ +++..+++++.++.+.  +||.............    ......+..+|
T Consensus       187 i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~--i~~~~~~~~~~~~~~~----~~~~~~h~~~v  257 (388)
T d1erja_         187 VRIWDLRTGQCSLTL---SIEDGVTTVAVSPGDGKYIAAGSLDRAVR--VWDSETGFLVERLDSE----NESGTGHKDSV  257 (388)
T ss_dssp             EEEEETTTTEEEEEE---ECSSCEEEEEECSTTCCEEEEEETTSCEE--EEETTTCCEEEEEC----------CCCSSCE
T ss_pred             eeeeecccccccccc---ccccccccccccCCCCCeEEEEcCCCeEE--EeecccCccceeeccc----cccccCCCCCE
Confidence            999999875322111   111223444454 4778889999999764  5887543322211110    00112233479


Q ss_pred             eEEEEcCCCCeEEEecCCCeEEEEeCCCcee------------eeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          247 NAIAFHPIYGTFATGGCDGFVNVWDGNNKKR------------LYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       247 ~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~------------~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      .+++|+|++++|++|+.||+|++||+.++..            ......|...|.+++|+|+|++|++|+.++
T Consensus       258 ~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg  330 (388)
T d1erja_         258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR  330 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred             EEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCC
Confidence            9999999999999999999999999875322            234456888999999999999999998754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=6e-28  Score=210.35  Aligned_cols=243  Identities=20%  Similarity=0.272  Sum_probs=175.6

Q ss_pred             eeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCcee-ec-ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCC
Q 019384           54 RGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKED-IL-GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR  130 (342)
Q Consensus        54 ~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~-~~-~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~  130 (342)
                      +...+|.++|++++|+|+++ +++|+.|++|++||+.+++.. .+ ..|...|.+++|+|++. +++++.|+++++|+..
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSS
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccC
Confidence            34568999999999998766 569999999999999887743 33 57999999999999875 6677889999999976


Q ss_pred             CCCCccee-eeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccC
Q 019384          131 GASGQERT-LVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVE  209 (342)
Q Consensus       131 ~~~~~~~~-~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~  209 (342)
                      ........ ...........+.++.+++ +++++.++.+++|+.....      .........+++++|+++.+++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~s~~~~~l~~g~~d  157 (299)
T d1nr0a2          85 GSGVDSSKAVANKLSSQPLGLAVSADGD-IAVAACYKHIAIYSHGKLT------EVPISYNSSCVALSNDKQFVAVGGQD  157 (299)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTTSS-CEEEEESSEEEEEETTEEE------EEECSSCEEEEEECTTSCEEEEEETT
T ss_pred             Cccccccccccccccccccccccccccc-ccccccccccccccccccc------cccccccccccccccccccccccccc
Confidence            43211111 1111222222333444444 4556677899999964321      11223456789999999999999999


Q ss_pred             CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceee---eccCCCCc
Q 019384          210 GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRL---YQYSKYPT  286 (342)
Q Consensus       210 ~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~---~~~~~~~~  286 (342)
                      +.+.  +||+..... .......|.         .+|.+++|+|++.+|++|+.|++|++||..++..+   ..+.+|..
T Consensus       158 g~i~--~~d~~~~~~-~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~  225 (299)
T d1nr0a2         158 SKVH--VYKLSGASV-SEVKTIVHP---------AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA  225 (299)
T ss_dssp             SEEE--EEEEETTEE-EEEEEEECS---------SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS
T ss_pred             cccc--ccccccccc-ccccccccc---------cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9765  588754321 111122232         26999999999999999999999999998876543   45678999


Q ss_pred             ceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          287 SIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       287 ~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      .|++++|+|+|++|++|+.+.           .|.+|+++.
T Consensus       226 ~v~~l~~s~~~~~l~sgs~dg-----------~i~iwd~~~  255 (299)
T d1nr0a2         226 KVACVSWSPDNVRLATGSLDN-----------SVIVWNMNK  255 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTS-----------CEEEEETTC
T ss_pred             ccccccccccccceEEEcCCC-----------EEEEEECCC
Confidence            999999999999999998765           477777654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.4e-27  Score=207.37  Aligned_cols=246  Identities=20%  Similarity=0.228  Sum_probs=186.1

Q ss_pred             EEECCCceeeeeeecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCC
Q 019384           45 LYDASANVLRGEFMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDK  122 (342)
Q Consensus        45 vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~  122 (342)
                      .|.........+.+|.++|++++|+|++. +++|+.|++|++|++.+++ ...+.+|...|.+++|++++..+++++.++
T Consensus         2 ~w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~   81 (317)
T d1vyhc1           2 EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM   81 (317)
T ss_dssp             CCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccCCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccc
Confidence            45444444455668999999999997765 5699999999999998877 456789999999999999999999999999


Q ss_pred             cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCce
Q 019384          123 SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTG  202 (342)
Q Consensus       123 ~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  202 (342)
                      ++.+|+......  ......+........+..+++.+++++.|+.+++||++++......  ........++++++++..
T Consensus        82 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  157 (317)
T d1vyhc1          82 TIKLWDFQGFEC--IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVRMVRPNQDGTL  157 (317)
T ss_dssp             CCCEEETTSSCE--EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECTTSSE
T ss_pred             cccccccccccc--ccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEE--ccCCCcceeeecccCCCE
Confidence            999999764322  1112222222333445556778999999999999999886432221  123345778899999999


Q ss_pred             EEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCC--------------------CCeEEEec
Q 019384          203 YALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPI--------------------YGTFATGG  262 (342)
Q Consensus       203 ~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~--------------------~~~l~sgs  262 (342)
                      +++++.++.+.  +|+......  ...+..|..         .+.+++|+|+                    +.++++|+
T Consensus       158 l~~~~~d~~v~--~~~~~~~~~--~~~~~~~~~---------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (317)
T d1vyhc1         158 IASCSNDQTVR--VWVVATKEC--KAELREHRH---------VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  224 (317)
T ss_dssp             EEEEETTSCEE--EEETTTCCE--EEEECCCSS---------CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             EEEEeCCCeEE--EEeecccee--eEEEecCCC---------CceEEEEeeccccceeeccccceeeeeccCCceeEecc
Confidence            99999999875  587754322  122222221         3555666554                    45789999


Q ss_pred             CCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          263 CDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       263 ~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      .|+.|++||.++++.+.++.+|...|.+++|+|++++|++++.++
T Consensus       225 ~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  269 (317)
T d1vyhc1         225 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK  269 (317)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCC
Confidence            999999999999999999999999999999999999999998754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.1e-27  Score=210.35  Aligned_cols=278  Identities=15%  Similarity=0.120  Sum_probs=189.3

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCC-cEEEEECCCc---eeeeeeec-CCceEEEEEeC--CCCe-EEEecCCcEEEEEeccC
Q 019384           20 DGISNLRFSNHSDHLLVSSWDK-SVRLYDASAN---VLRGEFMH-GGPVLDCCFHD--DSSG-FSASADHTVRRLVFSHG   91 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dg-ti~vwd~~~~---~~~~~~~h-~~~V~~~~~~~--~~~~-~s~s~D~~i~~w~~~~~   91 (342)
                      ..+++++|+|+++.||.++.+. .|+.||....   ......+| ...|++++|+|  ++.+ ++|+.|++|++|++...
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            3568999999999999887664 4677776443   23344566 46799999985  3444 58999999999998765


Q ss_pred             ce---------eecccCCcceeEEEEeCCCCEEEEeeC--CCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCC-
Q 019384           92 KE---------DILGKHDAPVRCIEYSYAAGQVITGSW--DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGN-  157 (342)
Q Consensus        92 ~~---------~~~~~h~~~V~~~~~~~~~~~l~sgs~--D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~-  157 (342)
                      ..         ..+..|..+|.+++|++++++|++++.  |+.+++|+.+++..  ...+.  .+...+.++.+  ++. 
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~--~h~~~v~~~~~~~~~~~  173 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS--LGEVS--GHSQRINACHLKQSRPM  173 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE--EEECC--SCSSCEEEEEECSSSSC
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc--ceeee--ecccccccccccccccc
Confidence            41         124568899999999999999877654  67899999865432  11222  23445555555  333 


Q ss_pred             eEEEEEcCCeEEEEeCCCCCCcccccc-cccceeeEEEEEeeC-CceEEEEccCCeEEEEEeechhhhhcccceeeeEEe
Q 019384          158 RLVVATAGRHVNVYDLRNMSQPEQRRE-SSLKYQTRCVRCYPN-GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK  235 (342)
Q Consensus       158 ~~~~~s~d~~v~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~-~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~  235 (342)
                      .+++++.|+.+++||+...+....... ......+.+++++|+ +..+++++.|+.+.  +||......  ...+..|..
T Consensus       174 ~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~--iwd~~~~~~--~~~l~~~~~  249 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS--CFDGKSGEF--LKYIEDDQE  249 (325)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE--EEETTTCCE--EEECCBTTB
T ss_pred             eEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccccccee--eeeeccccc--ccccccccc
Confidence            467899999999999876533221111 123345789999997 56788888999865  589864332  223333332


Q ss_pred             cCCCCceeeeeeEEEEc---CCCCeEEEecCCCeEEEEeCCCceeeeccCCCCc--ceEEEEECCCC-CEEEEEEecccc
Q 019384          236 SEAGRDIVYPVNAIAFH---PIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPT--SIAALSFSRDG-RLLAVASSYTFE  309 (342)
Q Consensus       236 ~~~~~~~~~~v~~v~~s---p~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~--~V~~v~~spdg-~~las~s~~~~~  309 (342)
                               ++..+.|+   |++++|++|+.|++|+|||+++++++..+..|..  .+..+++.+.+ .+|+++|.+.  
T Consensus       250 ---------~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg--  318 (325)
T d1pgua1         250 ---------PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG--  318 (325)
T ss_dssp             ---------CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS--
T ss_pred             ---------ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCC--
Confidence                     23333443   6899999999999999999999998877665543  34455554432 3677787665  


Q ss_pred             CCCCCCCCCcEEEEEc
Q 019384          310 EGDKPHEPDAIFVRSV  325 (342)
Q Consensus       310 ~~~~~~~~~~~~~~~~  325 (342)
                               .|.+|++
T Consensus       319 ---------~i~vwdl  325 (325)
T d1pgua1         319 ---------TLNFYEL  325 (325)
T ss_dssp             ---------CEEEEET
T ss_pred             ---------EEEEEEC
Confidence                     4888864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.5e-27  Score=208.28  Aligned_cols=243  Identities=11%  Similarity=0.136  Sum_probs=165.0

Q ss_pred             CC-CCCeEEEEEcC--CCCeEEEEeCCCcEEEEECCCce----e-----eeeeecCCceEEEEEeCCCCeE-EEe--cCC
Q 019384           17 PP-SDGISNLRFSN--HSDHLLVSSWDKSVRLYDASANV----L-----RGEFMHGGPVLDCCFHDDSSGF-SAS--ADH   81 (342)
Q Consensus        17 ~~-~~~V~~l~fs~--~~~~l~s~s~Dgti~vwd~~~~~----~-----~~~~~h~~~V~~~~~~~~~~~~-s~s--~D~   81 (342)
                      +| ...|++++|+|  ++.+||||+.||+|+|||+..+.    +     .....|.++|.+++|+++++.+ +++  .++
T Consensus        60 gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~  139 (325)
T d1pgua1          60 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN  139 (325)
T ss_dssp             TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC
T ss_pred             CCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccc
Confidence            44 56899999998  56899999999999999985432    1     1123588999999999877654 444  466


Q ss_pred             cEEEEEeccCc-eeecccCCcceeEEEEeCCCCE-EEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc---C
Q 019384           82 TVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQ-VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV---G  156 (342)
Q Consensus        82 ~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~-l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~---~  156 (342)
                      .+++|++++++ ...+.+|...|.+++|+|++.. +++++.|+.|++||.+..... ........+...+.+++++   +
T Consensus       140 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~-~~~~~~~~~~~~v~~v~~~pd~~  218 (325)
T d1pgua1         140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS-ASDRTHHKQGSFVRDVEFSPDSG  218 (325)
T ss_dssp             SEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE-EEECSSSCTTCCEEEEEECSTTC
T ss_pred             eEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccc-eecccccCCCCccEEeeeccccc
Confidence            79999998876 3567889999999999998864 788999999999998643211 1111112234445555554   3


Q ss_pred             CeEEEEEcCCeEEEEeCCCCCCcccccccc--cceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEE
Q 019384          157 NRLVVATAGRHVNVYDLRNMSQPEQRRESS--LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR  234 (342)
Q Consensus       157 ~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~  234 (342)
                      +.+++++.|+.|++||+++++.......+.  +.....++ ..|+++.+++++.|+.+  ++||+...+..+.+....|.
T Consensus       219 ~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~-~~~dg~~l~s~s~D~~i--~iwd~~~~~~~~~~~~~~~~  295 (325)
T d1pgua1         219 EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL-SWLDSQKFATVGADATI--RVWDVTTSKCVQKWTLDKQQ  295 (325)
T ss_dssp             CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEE-EESSSSEEEEEETTSEE--EEEETTTTEEEEEEECCTTC
T ss_pred             eeccccccccceeeeeeccccccccccccccccccceeee-eccCCCEEEEEeCCCeE--EEEECCCCCEEEEEEecCCc
Confidence            578899999999999998875332221111  11111222 23788899999999976  45998754433333222211


Q ss_pred             ecCCCCceeeeeeEEEEcCC-CCeEEEecCCCeEEEEeC
Q 019384          235 KSEAGRDIVYPVNAIAFHPI-YGTFATGGCDGFVNVWDG  272 (342)
Q Consensus       235 ~~~~~~~~~~~v~~v~~sp~-~~~l~sgs~Dg~I~iWd~  272 (342)
                      .         .+..+++.+. +.+|++|+.||+|++||+
T Consensus       296 ~---------~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         296 L---------GNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             G---------GGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             c---------cCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            1         2333444333 357899999999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=4.6e-26  Score=200.50  Aligned_cols=239  Identities=17%  Similarity=0.230  Sum_probs=181.0

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCce-----eeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEecc
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANV-----LRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSH   90 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~-----~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~   90 (342)
                      ..|...|.+++|+|++.+|++|+.|+++++|+.....     .....+|...........+..+.....|.....+....
T Consensus        94 ~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (340)
T d1tbga_          94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET  173 (340)
T ss_dssp             ECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTT
T ss_pred             ecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccccccccccccccccccccc
Confidence            4688999999999999999999999999999975432     22334577777666666666777888899888887766


Q ss_pred             Cce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEE--EeccCCeEEEEEcCCe
Q 019384           91 GKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYS--LSLVGNRLVVATAGRH  167 (342)
Q Consensus        91 ~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~--~s~~~~~~~~~s~d~~  167 (342)
                      ... .....+...+.+..+.+....+++|+.|+.|++||+++...  ...+..  +...+.+  ++++++.+++++.|+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~--~~~~~~--h~~~i~~v~~~p~~~~l~s~s~d~~  249 (340)
T d1tbga_         174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC--RQTFTG--HESDINAICFFPNGNAFATGSDDAT  249 (340)
T ss_dssp             TEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE--EEEECC--CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcE--EEEEeC--CCCCeEEEEECCCCCEEEEEeCCCe
Confidence            553 34456778899999999999999999999999999875432  222222  3334444  4556678999999999


Q ss_pred             EEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeee
Q 019384          168 VNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVN  247 (342)
Q Consensus       168 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~  247 (342)
                      |++||++................+.+++++|++..+++++.++.+.  +||.....  ....+.+|.         .+|+
T Consensus       250 i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~--iwd~~~~~--~~~~~~~H~---------~~V~  316 (340)
T d1tbga_         250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN--VWDALKAD--RAGVLAGHD---------NRVS  316 (340)
T ss_dssp             EEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEE--EEETTTCC--EEEEECCCS---------SCEE
T ss_pred             EEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEE--EEECCCCc--EEEEEcCCC---------CCEE
Confidence            9999998764332222223334578899999999999999999865  59985432  223344553         3699


Q ss_pred             EEEEcCCCCeEEEecCCCeEEEEe
Q 019384          248 AIAFHPIYGTFATGGCDGFVNVWD  271 (342)
Q Consensus       248 ~v~~sp~~~~l~sgs~Dg~I~iWd  271 (342)
                      +++|+|++.+|+||+.||+|+|||
T Consensus       317 ~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         317 CLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=3.8e-27  Score=209.62  Aligned_cols=288  Identities=10%  Similarity=0.036  Sum_probs=190.1

Q ss_pred             CCCccCCCCCCCCeEEEEEcCCCCeEEEEeCCC--cEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEecCCcEEE
Q 019384            9 TSGRELGNPPSDGISNLRFSNHSDHLLVSSWDK--SVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRR   85 (342)
Q Consensus         9 ~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s~Dg--ti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~   85 (342)
                      ..++...-.|...|++++|||||++|++++.|.  +|++||+.+++...+..|.+.|.+++|+|++.. ++++.++.+++
T Consensus        32 ~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~  111 (360)
T d1k32a3          32 SGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMT  111 (360)
T ss_dssp             TSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceecccccccc
Confidence            344444457899999999999999999877663  899999999988888889999999999987764 68899999999


Q ss_pred             EEeccCce-eecccCCcceeEEEEeCCCCEEEEe----------eCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec
Q 019384           86 LVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITG----------SWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL  154 (342)
Q Consensus        86 w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sg----------s~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~  154 (342)
                      |+..+++. ..+..|...+.+++|+|++++|+.+          ..++.+++||..+...   ..+...........++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~---~~~~~~~~~~~~~~~sp  188 (360)
T d1k32a3         112 VDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI---FAATTENSHDYAPAFDA  188 (360)
T ss_dssp             EETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE---EECSCSSSBEEEEEECT
T ss_pred             ccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCce---eeecccccccccccccC
Confidence            99988874 4567788899999999999998743          4456799999875322   11112222233456777


Q ss_pred             cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEE----------EEEeeCCceEEEEccCCe---EEEEEeechh
Q 019384          155 VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRC----------VRCYPNGTGYALSSVEGR---VAMEFFDLSE  221 (342)
Q Consensus       155 ~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~s~~~~---~~i~~~d~~~  221 (342)
                      +++.|++++.++.+++||.........     .......          +.+.+++..++.+..+..   ..++.++...
T Consensus       189 dg~~l~~~s~~~~~~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (360)
T d1k32a3         189 DSKNLYYLSYRSLDPSPDRVVLNFSFE-----VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP  263 (360)
T ss_dssp             TSCEEEEEESCCCCCEECSSSSCEECC-----SCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC
T ss_pred             CCCEEEEEeCCCceEcccccccceeec-----cccceEEEecccCccccceECCCcCcccccceeecccccceeecccCc
Confidence            888999999999999999765422110     0011111          223333333222211100   0011111110


Q ss_pred             hhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEE
Q 019384          222 ASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLA  301 (342)
Q Consensus       222 ~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~la  301 (342)
                      ..   ...+..+      .++...+..+.+++.+.++++++.++.|++||.++++..    .|.+.|.+++|||||++|+
T Consensus       264 ~~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~  330 (360)
T d1k32a3         264 GD---YRMIIPL------ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVM  330 (360)
T ss_dssp             BC---EEEEEEC------SSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEE
T ss_pred             Cc---eeEeeec------CCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEE
Confidence            00   0001111      111112333334444556888999999999999876532    3446799999999999999


Q ss_pred             EEEeccccCCCCCCCCCcEEEEEccCC
Q 019384          302 VASSYTFEEGDKPHEPDAIFVRSVNEI  328 (342)
Q Consensus       302 s~s~~~~~~~~~~~~~~~~~~~~~~~~  328 (342)
                      +++.++           .|.+|.++.+
T Consensus       331 ~~~~Dg-----------~i~v~d~~~~  346 (360)
T d1k32a3         331 VRKDDG-----------KIYTFPLEKP  346 (360)
T ss_dssp             EEETTS-----------CEEEEESSCT
T ss_pred             EEECCC-----------eEEEEECCCC
Confidence            988765           5888888653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.9e-25  Score=200.64  Aligned_cols=251  Identities=12%  Similarity=0.110  Sum_probs=162.8

Q ss_pred             eecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCcee-------ecccCCcceeEEEE---eC----CCCEEEEeeCCC
Q 019384           57 FMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKED-------ILGKHDAPVRCIEY---SY----AAGQVITGSWDK  122 (342)
Q Consensus        57 ~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~-------~~~~h~~~V~~~~~---~~----~~~~l~sgs~D~  122 (342)
                      .+|.+.|+++++.+ +.++|||.|++|++|+..+.+..       ....|...+..+..   .+    +...+++++.|+
T Consensus        11 ~~H~~~I~~v~~~~-~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg   89 (393)
T d1sq9a_          11 KAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG   89 (393)
T ss_dssp             SCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred             CcccCccEEEEEeC-CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCC
Confidence            47999999999864 57889999999999997665421       11234433322221   11    123578999999


Q ss_pred             cEEEEcCCCCCCcceeeeee------cCCCCcE--EEEecc-----CCeEEEEEcCCeEEEEeCCCCCCcccc-------
Q 019384          123 SLKCWDPRGASGQERTLVGT------YPQPERV--YSLSLV-----GNRLVVATAGRHVNVYDLRNMSQPEQR-------  182 (342)
Q Consensus       123 ~I~iWd~~~~~~~~~~~~~~------~~~~~~v--~~~s~~-----~~~~~~~s~d~~v~iwd~~~~~~~~~~-------  182 (342)
                      +|++|++.............      ......+  ..+...     .+.+++++.|+++++||+.........       
T Consensus        90 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  169 (393)
T d1sq9a_          90 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP  169 (393)
T ss_dssp             CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred             cEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc
Confidence            99999875432211111100      0111223  233333     246888999999999998543211000       


Q ss_pred             ---------cccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcC
Q 019384          183 ---------RESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP  253 (342)
Q Consensus       183 ---------~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp  253 (342)
                               ........+.+++++|++ .+++++.|+.++  +||.........+  .....   ...|..+|++++|+|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~--iwd~~~~~~~~~~--~~~~~---l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         170 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQ--ISELSTLRPLYNF--ESQHS---MINNSNSIRSVKFSP  241 (393)
T ss_dssp             EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEE--EEETTTTEEEEEE--ECCC------CCCCCEEEEEECS
T ss_pred             ceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEE--EEeeccccccccc--ccccc---cccccceEEEccccc
Confidence                     000111235688899987 788999999865  5998654332211  11100   112334799999999


Q ss_pred             CCCeEEEecCCC---eEEEEeCCCceeeecc-------------CCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCC
Q 019384          254 IYGTFATGGCDG---FVNVWDGNNKKRLYQY-------------SKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEP  317 (342)
Q Consensus       254 ~~~~l~sgs~Dg---~I~iWd~~~~~~~~~~-------------~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~  317 (342)
                      +|++|++|+.|+   .|++||+++++.+..+             .+|.+.|++++|+|||++|+++|.+.          
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~----------  311 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG----------  311 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS----------
T ss_pred             ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCC----------
Confidence            999999999987   4999999987766554             37999999999999999999999765          


Q ss_pred             CcEEEEEccC
Q 019384          318 DAIFVRSVNE  327 (342)
Q Consensus       318 ~~~~~~~~~~  327 (342)
                       .|.+|+++.
T Consensus       312 -~v~vWd~~~  320 (393)
T d1sq9a_         312 -KLRFWDVKT  320 (393)
T ss_dssp             -EEEEEETTT
T ss_pred             -EEEEEECCC
Confidence             466666643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.3e-24  Score=191.55  Aligned_cols=236  Identities=16%  Similarity=0.203  Sum_probs=164.1

Q ss_pred             eeeeeecCCce-EEEEEeCCCCeEEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCC
Q 019384           53 LRGEFMHGGPV-LDCCFHDDSSGFSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPR  130 (342)
Q Consensus        53 ~~~~~~h~~~V-~~~~~~~~~~~~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~  130 (342)
                      ..++.+|.+.| +|+.|. ++.+++|+.|++|++||+.+++ ...+.+|.+.|++++|+++ +.|+||+.|++|++|+..
T Consensus         5 ~~tL~GH~~~vitc~~~~-~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQFE-DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EEEEECCSSSCEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETT
T ss_pred             cEEECCcCCCcEEEEEEC-CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccc
Confidence            44566898886 555554 5567899999999999998877 4567899999999999985 589999999999999987


Q ss_pred             CCCCcceeeeeecCCCCcEEEE--eccCCeEEEEEcCCeEEEEeCCCCCCccccccc---------c--cc-------e-
Q 019384          131 GASGQERTLVGTYPQPERVYSL--SLVGNRLVVATAGRHVNVYDLRNMSQPEQRRES---------S--LK-------Y-  189 (342)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~v~~~--s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~---------~--~~-------~-  189 (342)
                      .....  ...............  ..++..+++++.|+.|++||++...........         .  ..       . 
T Consensus        83 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          83 KGCCT--HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTEEE--EEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred             ccccc--cccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence            53221  111111111222222  334457899999999999999865321110000         0  00       0 


Q ss_pred             eeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEE
Q 019384          190 QTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNV  269 (342)
Q Consensus       190 ~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~i  269 (342)
                      ........++++.++.+..++.+.  +||.......  .....+         ...+.++.|+|++..+++++.|++|++
T Consensus       161 ~~~v~~~~~~~~~~~~~~~d~~i~--~~d~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~~~~d~~i~i  227 (355)
T d1nexb2         161 MASVRTVSGHGNIVVSGSYDNTLI--VWDVAQMKCL--YILSGH---------TDRIYSTIYDHERKRCISASMDTTIRI  227 (355)
T ss_dssp             SSCEEEEEEETTEEEEEETTSCEE--EEETTTTEEE--EEECCC---------SSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cccccccccccceeeeecccceee--eeecccccce--eeeecc---------ccccccccccccceeeecccccceEEe
Confidence            011223556778888888888764  5887543221  111111         125778999999999999999999999


Q ss_pred             EeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          270 WDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       270 Wd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                      ||.+++..+..+.+|...|.+++|++  ++|++++.++
T Consensus       228 ~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg  263 (355)
T d1nexb2         228 WDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADG  263 (355)
T ss_dssp             EETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTS
T ss_pred             eecccccccccccccccccccccccc--ceeeeeeccc
Confidence            99999999999999999999999975  6899888654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-23  Score=183.02  Aligned_cols=240  Identities=18%  Similarity=0.196  Sum_probs=164.4

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee-ecCC---------------------------------
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF-MHGG---------------------------------   61 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~-~h~~---------------------------------   61 (342)
                      ..|.+.|++++|+++  +|++|+.|+++++|+.......... .+..                                 
T Consensus        54 ~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~  131 (342)
T d2ovrb2          54 VGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH  131 (342)
T ss_dssp             CCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEE
T ss_pred             eCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeeccccccee
Confidence            578999999999974  9999999999999998654321111 0000                                 


Q ss_pred             ------ceEEEEEeCCCCeEEEecCCcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCC
Q 019384           62 ------PVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASG  134 (342)
Q Consensus        62 ------~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~  134 (342)
                            ............++.++.|+.+++|+...... ..+.+|...+.++.+  ++..|++|+.|++|++||++....
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~  209 (342)
T d2ovrb2         132 VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC  209 (342)
T ss_dssp             EEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCE
T ss_pred             eeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeeccccee
Confidence                  01111122334567888999999999877663 456778777766655  678999999999999999875432


Q ss_pred             cceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCccccccc-ccceeeEEEEEeeCCceEEEEccCCeEE
Q 019384          135 QERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRES-SLKYQTRCVRCYPNGTGYALSSVEGRVA  213 (342)
Q Consensus       135 ~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~s~~~~~~  213 (342)
                        ...  ...+...+.+++++++.+++++.|+.|++||+...+........ .....+.+  +.+++..+++++.|+.+ 
T Consensus       210 --~~~--~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~s~Dg~i-  282 (342)
T d2ovrb2         210 --IHT--LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC--LQFNKNFVITSSDDGTV-  282 (342)
T ss_dssp             --EEE--ECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEE--EEECSSEEEEEETTSEE-
T ss_pred             --eeE--ecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceee--cccCCCeeEEEcCCCEE-
Confidence              111  22344567788889999999999999999999876433221111 11122333  44566789999999976 


Q ss_pred             EEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCe----EEEEeCC
Q 019384          214 MEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGF----VNVWDGN  273 (342)
Q Consensus       214 i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~----I~iWd~~  273 (342)
                       ++||+++.+..+.  +...    ....+..+|++++|+|++.+|++|+.||+    |++||.+
T Consensus       283 -~iwd~~tg~~i~~--~~~~----~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         283 -KLWDLKTGEFIRN--LVTL----ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             -EEEETTTCCEEEE--EEEC----TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             -EEEECCCCCEEEE--Eecc----cCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence             5699865433222  1111    11123347999999999999999999985    9999976

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.1e-23  Score=176.91  Aligned_cols=231  Identities=13%  Similarity=0.229  Sum_probs=167.1

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce--
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE--   93 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~--   93 (342)
                      ..|.+.|++|+|  ++++|+||+.|++|++|++..+.......+..............++++..++.+++|+......  
T Consensus        52 ~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (293)
T d1p22a2          52 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT  129 (293)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCE
T ss_pred             ecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeecccccccc
Confidence            578999999987  5689999999999999999887655544444444444444566778999999999999877652  


Q ss_pred             --eecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEE
Q 019384           94 --DILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVY  171 (342)
Q Consensus        94 --~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iw  171 (342)
                        ..+..|...|.++.+.+  ..+++++.|++|++||+++...  ...+.  .....+..+.+++..+++++.|+.|++|
T Consensus       130 ~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~--~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~i~  203 (293)
T d1p22a2         130 LRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEF--VRTLN--GHKRGIACLQYRDRLVVSGSSDNTIRLW  203 (293)
T ss_dssp             EEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCE--EEEEE--CCSSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred             ccccccccccccccceecc--cccccccCCCceeeecCCCCcE--EEEEc--ccccccccccCCCCeEEEecCCCEEEEE
Confidence              34567888998888764  5788999999999999875432  12222  2344567788888899999999999999


Q ss_pred             eCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhccc-------ceeeeEEecCCCCceee
Q 019384          172 DLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK-------YAFKCHRKSEAGRDIVY  244 (342)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~-------~~~~~h~~~~~~~~~~~  244 (342)
                      |+++........  .....+.  .+.+++..+++++.|+.+.  +||+........       ..+.+|         ..
T Consensus       204 d~~~~~~~~~~~--~~~~~v~--~~~~~~~~l~sg~~dg~i~--iwd~~~~~~~~~~~~~~~~~~~~~H---------~~  268 (293)
T d1p22a2         204 DIECGACLRVLE--GHEELVR--CIRFDNKRIVSGAYDGKIK--VWDLVAALDPRAPAGTLCLRTLVEH---------SG  268 (293)
T ss_dssp             ETTTCCEEEEEC--CCSSCEE--EEECCSSEEEEEETTSCEE--EEEHHHHTSTTSCTTTTEEEEECCC---------SS
T ss_pred             ecccceeeeeec--ccceeee--eccccceEEEEEcCCCEEE--EEECCCCccccccCCceeeEEecCC---------CC
Confidence            998764322211  1111222  3567788899999999875  588765432211       122333         33


Q ss_pred             eeeEEEEcCCCCeEEEecCCCeEEEEe
Q 019384          245 PVNAIAFHPIYGTFATGGCDGFVNVWD  271 (342)
Q Consensus       245 ~v~~v~~sp~~~~l~sgs~Dg~I~iWd  271 (342)
                      +|.+++|+  +.+|+|||.||+|+|||
T Consensus       269 ~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         269 RVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             CEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            68899985  56899999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.7e-23  Score=182.96  Aligned_cols=239  Identities=14%  Similarity=0.108  Sum_probs=160.9

Q ss_pred             eecCCceEEEEEeCCCC-eEEEecCCcEEEEEeccCce----eecccCCcceeEEEEeCCC-CEEEEeeCCCcEEEEcCC
Q 019384           57 FMHGGPVLDCCFHDDSS-GFSASADHTVRRLVFSHGKE----DILGKHDAPVRCIEYSYAA-GQVITGSWDKSLKCWDPR  130 (342)
Q Consensus        57 ~~h~~~V~~~~~~~~~~-~~s~s~D~~i~~w~~~~~~~----~~~~~h~~~V~~~~~~~~~-~~l~sgs~D~~I~iWd~~  130 (342)
                      .+|++.|++++|+|++. +++||.|++|++|++.....    ....+|..+|.+++|+|++ .+|++|+.|++|++|++.
T Consensus         8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~   87 (342)
T d1yfqa_           8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecc
Confidence            46999999999997665 56999999999999976542    2234799999999999865 578999999999999987


Q ss_pred             CCCCcceeeeeecCCC-CcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccc----cccceeeEEEEEeeCCceEEE
Q 019384          131 GASGQERTLVGTYPQP-ERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRE----SSLKYQTRCVRCYPNGTGYAL  205 (342)
Q Consensus       131 ~~~~~~~~~~~~~~~~-~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~  205 (342)
                      .....  ......... ............+++++.++++++||++..........    ...........+.+.+..+++
T Consensus        88 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (342)
T d1yfqa_          88 GSPSF--QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIV  165 (342)
T ss_dssp             SSSSE--EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEE
T ss_pred             ccccc--ccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceee
Confidence            54332  111111112 22333444667899999999999999875432211110    011112334556778888999


Q ss_pred             EccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEE-cCCCCeEEEecCCCeEEEEeCCCceee------
Q 019384          206 SSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAF-HPIYGTFATGGCDGFVNVWDGNNKKRL------  278 (342)
Q Consensus       206 ~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~-sp~~~~l~sgs~Dg~I~iWd~~~~~~~------  278 (342)
                      ++.++.+.  +||+..........  ....      ....+.++++ +.++..+++++.||.+.+|+.......      
T Consensus       166 ~~~d~~i~--~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~  235 (342)
T d1yfqa_         166 GMNNSQVQ--WFRLPLCEDDNGTI--EESG------LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             EESTTEEE--EEESSCCTTCCCEE--EECS------CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             ecCCCcEE--EEecccCcccceee--eecc------cccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccc
Confidence            99999765  58875433222211  1111      0112344444 456778999999999999987532111      


Q ss_pred             ---------eccCCCCcceEEEEECCCCCEEEEEEecc
Q 019384          279 ---------YQYSKYPTSIAALSFSRDGRLLAVASSYT  307 (342)
Q Consensus       279 ---------~~~~~~~~~V~~v~~spdg~~las~s~~~  307 (342)
                               ....+|...|++++|+|++.+||+|+.++
T Consensus       236 ~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg  273 (342)
T d1yfqa_         236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG  273 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred             ceeeeeeeccCCCcccccceeEEecCCccEEEEECCCC
Confidence                     12245667899999999999999999765

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3e-23  Score=179.29  Aligned_cols=229  Identities=18%  Similarity=0.150  Sum_probs=162.6

Q ss_pred             eeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCC
Q 019384           54 RGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGAS  133 (342)
Q Consensus        54 ~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~  133 (342)
                      +.+.+|.++|++++|++   ++||+.|++|++|++.+.    ..+|+..|.+++++++ ..+++++.|++|++|++... 
T Consensus         7 ~~l~gH~~~I~~l~~s~---l~sgs~Dg~v~~Wd~~~~----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~-   77 (287)
T d1pgua2           7 KTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSM----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKH-   77 (287)
T ss_dssp             EEECCCSSCEEEEETTT---TEEEETTSCEEETTTTEE----ECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEE-
T ss_pred             EEECCCCCceEEEEECc---EEEEeCCCeEEEEECCCC----CCCCCCCEEEEEecCC-CeEEEEeecccccccccccc-
Confidence            44568999999999975   899999999999987653    3689999999999865 56899999999999996421 


Q ss_pred             CcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEE
Q 019384          134 GQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVA  213 (342)
Q Consensus       134 ~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~  213 (342)
                              .+........+..+ ..++..+.++.+.+|+..+......     ........++.+++..+++++.++. .
T Consensus        78 --------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~-~  142 (287)
T d1pgua2          78 --------EFGSQPKVASANND-GFTAVLTNDDDLLILQSFTGDIIKS-----VRLNSPGSAVSLSQNYVAVGLEEGN-T  142 (287)
T ss_dssp             --------ECSSCEEEEEECSS-SEEEEEETTSEEEEEETTTCCEEEE-----EECSSCEEEEEECSSEEEEEETTTS-C
T ss_pred             --------ccccceeeeeeccC-CceEEEeecccceeeeccceeeeee-----ccccceeeeeeccCcceeeeccccc-e
Confidence                    11111222223322 3555567777899999877643211     1112234556788888888877654 2


Q ss_pred             EEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeee-ccCCCCcceEEEE
Q 019384          214 MEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLY-QYSKYPTSIAALS  292 (342)
Q Consensus       214 i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~-~~~~~~~~V~~v~  292 (342)
                      +++|+........  .+.        ..+..++.+++|+|++.+|++|+.||.|++||..+++.+. .+.+|..+|.+++
T Consensus       143 v~~~~~~~~~~~~--~~~--------~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~  212 (287)
T d1pgua2         143 IQVFKLSDLEVSF--DLK--------TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAIS  212 (287)
T ss_dssp             EEEEETTEEEEEE--ECS--------SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEE
T ss_pred             eeeeeccccceee--eee--------eccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceee
Confidence            4568874322111  111        1122368999999999999999999999999999887654 5778999999999


Q ss_pred             ECCC----------CCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          293 FSRD----------GRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       293 ~spd----------g~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      |+|+          +.+||+|+.+.           .|.+|+++.
T Consensus       213 ~~p~~~~~~~~~~~~~~l~sgs~D~-----------~i~iw~~~~  246 (287)
T d1pgua2         213 WKPAEKGANEEEIEEDLVATGSLDT-----------NIFIYSVKR  246 (287)
T ss_dssp             ECCCC------CCSCCEEEEEETTS-----------CEEEEESSC
T ss_pred             ecccccccccccCCCCeeEeecCCC-----------eEEEEECCC
Confidence            9875          46888888665           477777643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1.2e-22  Score=186.11  Aligned_cols=274  Identities=10%  Similarity=0.004  Sum_probs=168.1

Q ss_pred             EcCCC--CeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCcee------ecc
Q 019384           27 FSNHS--DHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKED------ILG   97 (342)
Q Consensus        27 fs~~~--~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~~------~~~   97 (342)
                      ++.|.  ..+++.+.||+|+|||+.+++++..+.+...+.+++|+||++. ++++.|+++++||+.+++..      ...
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~  105 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI  105 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCC
Confidence            44443  3457888999999999999887777766677999999988875 58889999999999887632      234


Q ss_pred             cCCcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCCCcceeeeeecCCC---------Cc--EEEEeccCCeEEEEEc-
Q 019384           98 KHDAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGASGQERTLVGTYPQP---------ER--VYSLSLVGNRLVVATA-  164 (342)
Q Consensus        98 ~h~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~---------~~--v~~~s~~~~~~~~~s~-  164 (342)
                      +|...+.+++|+|||+++ +++..++++++||..+....  .....+...         ..  ....+.++..++.... 
T Consensus       106 ~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~  183 (426)
T d1hzua2         106 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK--QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  183 (426)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE--EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcccee--EEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC
Confidence            677778888999999987 55668899999998754321  111111000         11  1122223333333222 


Q ss_pred             CCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceee-------------
Q 019384          165 GRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFK-------------  231 (342)
Q Consensus       165 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~-------------  231 (342)
                      .+.+.+++.......... ..........+.++|+++.++++..+... +.+++..+..........             
T Consensus       184 ~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (426)
T d1hzua2         184 TGKVLLVNYKDIDNLTVT-SIGAAPFLADGGWDSSHRYFMTAANNSNK-VAVIDSKDRRLSALVDVGKTPHPGRGANFVH  261 (426)
T ss_dssp             TTEEEEEECSSSSSCEEE-EEECCSSEEEEEECTTSCEEEEEETTCSE-EEEEETTTTEEEEEEECSSCCCCSCCEEEEE
T ss_pred             CCeEEEEEeccccceeeE-EeccCCccEeeeECCCCcEEEeeeecccc-eeeeecccccEEEEeccCCcccccceeeeec
Confidence            234555554443221111 11222345677888988877766544332 234444322111000000             


Q ss_pred             ---------eE---------EecC------------CCCceeeeeeEEEEcCCCCeEE-------EecCCCeEEEEeCCC
Q 019384          232 ---------CH---------RKSE------------AGRDIVYPVNAIAFHPIYGTFA-------TGGCDGFVNVWDGNN  274 (342)
Q Consensus       232 ---------~h---------~~~~------------~~~~~~~~v~~v~~sp~~~~l~-------sgs~Dg~I~iWd~~~  274 (342)
                               .+         ....            ....+...+..++|+|++++|+       +++.|++|+|||+++
T Consensus       262 ~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t  341 (426)
T d1hzua2         262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN  341 (426)
T ss_dssp             TTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred             CCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCC
Confidence                     00         0000            0001123578899999999999       466789999999988


Q ss_pred             ceeeec---------cCCCCcceEEEEECCCCCEEEEEE
Q 019384          275 KKRLYQ---------YSKYPTSIAALSFSRDGRLLAVAS  304 (342)
Q Consensus       275 ~~~~~~---------~~~~~~~V~~v~~spdg~~las~s  304 (342)
                      ++...+         +..|..+|.+++|||||++|..++
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~  380 (426)
T d1hzua2         342 LDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV  380 (426)
T ss_dssp             TTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEE
T ss_pred             CCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEE
Confidence            765433         345677899999999999776544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=1.3e-19  Score=156.28  Aligned_cols=263  Identities=15%  Similarity=0.137  Sum_probs=177.0

Q ss_pred             EEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCC-eE-EEecCCcEEEEEeccCcee-ecccCCcceeEEEEeC
Q 019384           34 LLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSS-GF-SASADHTVRRLVFSHGKED-ILGKHDAPVRCIEYSY  110 (342)
Q Consensus        34 l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~-~~-s~s~D~~i~~w~~~~~~~~-~~~~h~~~V~~~~~~~  110 (342)
                      .++++.|++|+|||+.++++...+...+.+..++|+|+++ ++ +++.++.|++||+.+++.. .+..|. .+..++|++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~   83 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP   83 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccc
Confidence            4678899999999999999888877778889999998876 43 5667899999999888743 344443 568899999


Q ss_pred             CCCEE-EEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEE-EEEcCCeEEEEeCCCCCCcccccccccc
Q 019384          111 AAGQV-ITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLV-VATAGRHVNVYDLRNMSQPEQRRESSLK  188 (342)
Q Consensus       111 ~~~~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~-~~s~d~~v~iwd~~~~~~~~~~~~~~~~  188 (342)
                      ++..+ +++..++.+++||..+...  ...+.. ........++.++..++ ++..++.+.+|+..+.......   ...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  157 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTV--AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV---SVG  157 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEE--EEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---ECC
T ss_pred             ccccccccccccceeeeccccccee--eeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeec---ccC
Confidence            98765 5667778999999865322  122221 12223345566666654 4556778999999876332111   112


Q ss_pred             eeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEe---cCCC
Q 019384          189 YQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATG---GCDG  265 (342)
Q Consensus       189 ~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sg---s~Dg  265 (342)
                      ....++.++|++..++++..+... +.+++.......  ..+..          ...+..++|++++..++.+   ..++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~----------~~~~~~~~~~~~g~~~~v~~~~~~~~  224 (301)
T d1l0qa2         158 RSPKGIAVTPDGTKVYVANFDSMS-ISVIDTVTNSVI--DTVKV----------EAAPSGIAVNPEGTKAYVTNVDKYFN  224 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEE--EEEEC----------SSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred             CCceEEEeeccccceeeecccccc-cccccccceeee--ecccc----------cCCcceeeccccccccccccccceee
Confidence            235678899999888777665443 234544322111  11110          0135678999999987654   3457


Q ss_pred             eEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          266 FVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       266 ~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      +|++||..+++.+..+..+ ..+.+++|||||++|.++++.+   +       .|.+|+++.
T Consensus       225 ~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~---~-------~i~v~D~~t  275 (301)
T d1l0qa2         225 TVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFC---N-------TVSVIDTAT  275 (301)
T ss_dssp             EEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTT---T-------EEEEEETTT
T ss_pred             eeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCC---C-------eEEEEECCC
Confidence            8999999999888776543 5689999999999875554422   1       477776654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=3.8e-21  Score=176.54  Aligned_cols=307  Identities=11%  Similarity=-0.044  Sum_probs=175.7

Q ss_pred             CCCccCCCC-CCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCcee--eeee----ecCCceEEEEEeCCCCe--EEEec
Q 019384            9 TSGRELGNP-PSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVL--RGEF----MHGGPVLDCCFHDDSSG--FSASA   79 (342)
Q Consensus         9 ~~~~~~~~~-~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~--~~~~----~h~~~V~~~~~~~~~~~--~s~s~   79 (342)
                      .+++.++.. ....+..++|||||++|++++.|+++++||+.+++.  ...+    .|.+.+.+..|++|++.  ++++.
T Consensus        50 ~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~  129 (432)
T d1qksa2          50 STYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW  129 (432)
T ss_dssp             TTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred             CCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCC
Confidence            344555532 235799999999999999999999999999976542  2222    35555666667777764  46788


Q ss_pred             CCcEEEEEeccCcee-ecc-----------cCCcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCCCcceeeeeecCCC
Q 019384           80 DHTVRRLVFSHGKED-ILG-----------KHDAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGASGQERTLVGTYPQP  146 (342)
Q Consensus        80 D~~i~~w~~~~~~~~-~~~-----------~h~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~  146 (342)
                      ++++++||..+++.. .+.           .+......+.+++++..+ ++.+.++.|.+||..+........+. ....
T Consensus       130 ~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~-~g~~  208 (432)
T d1qksa2         130 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERF  208 (432)
T ss_dssp             TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSS
T ss_pred             CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEc-ccCc
Confidence            999999999887632 221           245567788999998775 67778899999997653321111111 1111


Q ss_pred             CcEEEEeccCCeEEEEEcC-CeEEEEeCCCCCCcccccccc---cceeeEEEEEeeCCceEEEEccCCeEEEEEeechhh
Q 019384          147 ERVYSLSLVGNRLVVATAG-RHVNVYDLRNMSQPEQRRESS---LKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEA  222 (342)
Q Consensus       147 ~~v~~~s~~~~~~~~~s~d-~~v~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~  222 (342)
                      .....+++++..+++++.+ +.+.++|..+...........   ......... .+.+..+......++..+.+|+....
T Consensus       209 ~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~g~~~~~~~lg~~~v~~~~~~~~  287 (432)
T d1qksa2         209 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFV-HPTFGPVWATSHMGDDSVALIGTDPE  287 (432)
T ss_dssp             EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEE-ETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             cccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCccccee-cCCCCceecccccCCceEEecccccc
Confidence            2234566777777666554 578899987653211110000   000011111 12222222222211112334543221


Q ss_pred             hhc-cccee----e----------eEEec------CCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeecc
Q 019384          223 SQA-KKYAF----K----------CHRKS------EAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQY  281 (342)
Q Consensus       223 ~~~-~~~~~----~----------~h~~~------~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~  281 (342)
                      ... ..+..    .          .|...      .....+.....++++ ||++.|++++.|+++++|+..++   ..+
T Consensus       288 ~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~---~~l  363 (432)
T d1qksa2         288 GHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEW---AGI  363 (432)
T ss_dssp             TCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHH---HTC
T ss_pred             cccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEecccccc---ccc
Confidence            110 00000    0          00000      000000011334555 89999999999999999987544   334


Q ss_pred             CCCCcceEEEEECCCCCEEEEEEecc-ccCCCCCCCCCcEEEEEccCC
Q 019384          282 SKYPTSIAALSFSRDGRLLAVASSYT-FEEGDKPHEPDAIFVRSVNEI  328 (342)
Q Consensus       282 ~~~~~~V~~v~~spdg~~las~s~~~-~~~~~~~~~~~~~~~~~~~~~  328 (342)
                      .+|..+|.+++|||||++|+.++-.. -+++       .|++|...-+
T Consensus       364 ~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g-------~i~i~D~~T~  404 (432)
T d1qksa2         364 TEGQPRVVQGEFNKDGTEVWFSVWNGKDQES-------ALVVVDDKTL  404 (432)
T ss_dssp             CSSCCEEEEEEECTTSSEEEEEEECCTTSCC-------EEEEEETTTT
T ss_pred             CCCCCcEEEeEECCCCCEEEEEEecCCCCCC-------cEEEEECCCc
Confidence            56778899999999999887665322 1223       3777765533

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.85  E-value=3.5e-21  Score=170.52  Aligned_cols=254  Identities=7%  Similarity=-0.067  Sum_probs=158.2

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeCCCCeEE-E----------ecCCcE
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHDDSSGFS-A----------SADHTV   83 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~~~~~~s-~----------s~D~~i   83 (342)
                      ..|...|.+++|+|++++|++++.|+.+++|+..++..... ..|...+.+++|+++++.+. +          ..++.+
T Consensus        82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~  161 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  161 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccce
Confidence            57889999999999999999999999999999988765443 46788899999998887653 2          233458


Q ss_pred             EEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcc-----eeeeeecCCCCcEEEEeccCCe
Q 019384           84 RRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQE-----RTLVGTYPQPERVYSLSLVGNR  158 (342)
Q Consensus        84 ~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~-----~~~~~~~~~~~~v~~~s~~~~~  158 (342)
                      ++|+..+++...+..|...+.+++|+|+++.|++++.|+.+++||........     ...+...........++.++..
T Consensus       162 ~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  241 (360)
T d1k32a3         162 HVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMT  241 (360)
T ss_dssp             EEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGS
T ss_pred             eeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCc
Confidence            89999888777777788889999999999999999999999999965321100     0000000111111112222222


Q ss_pred             EEEEEcCC---eEEEEeCCCCCCcccccccccceeeEEEEEeeCCc---eEEEEccCCeEEEEEeechhhhhcccceeee
Q 019384          159 LVVATAGR---HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGT---GYALSSVEGRVAMEFFDLSEASQAKKYAFKC  232 (342)
Q Consensus       159 ~~~~s~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~  232 (342)
                      +.++..+.   ..++|.+......... ....+.....+.+...+.   .++.++.++  .+++||....+      ...
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~------~~~  312 (360)
T d1k32a3         242 SEAGEYDLNDMYKRSSPINVDPGDYRM-IIPLESSILIYSVPVHGEFAAYYQGAPEKG--VLLKYDVKTRK------VTE  312 (360)
T ss_dssp             CCCCCCCCTTGGGGCEECSCCCBCEEE-EEECSSEEEEEECCCCCSHHHHHHCCCCCE--EEEEEETTTCC------EEE
T ss_pred             ccccceeecccccceeecccCcCceeE-eeecCCCceEEEEEecCCCeeEEEecCCCC--EEEEEECCCCe------EEE
Confidence            22222111   1223322211000000 011112222333322222   233333333  45679975321      112


Q ss_pred             EEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcc
Q 019384          233 HRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTS  287 (342)
Q Consensus       233 h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~  287 (342)
                      |.         +.|.+++|+|||++|++++.||+|++||+++++...++..+..+
T Consensus       313 ~~---------~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~  358 (360)
T d1k32a3         313 VK---------NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRP  358 (360)
T ss_dssp             EE---------EEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSC
T ss_pred             ec---------CCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEecccc
Confidence            22         25889999999999999999999999999988776666554443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=7.1e-19  Score=151.65  Aligned_cols=246  Identities=13%  Similarity=0.093  Sum_probs=167.7

Q ss_pred             CCCeEEEEEcCCCCeE-EEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-E-EEecCCcEEEEEeccCceee
Q 019384           19 SDGISNLRFSNHSDHL-LVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-F-SASADHTVRRLVFSHGKEDI   95 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l-~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~-s~s~D~~i~~w~~~~~~~~~   95 (342)
                      ...+..++|+|||++| ++++.+++|++||+.+++....+.....+..+.|++++.. + ++..+..+.+|+..+++...
T Consensus        31 g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccccccccccccccceeeecccccceeee
Confidence            4568899999999987 5677899999999998887766655566788999876654 3 55567789999988877554


Q ss_pred             cccCCcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcC-CeEEEEeC
Q 019384           96 LGKHDAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAG-RHVNVYDL  173 (342)
Q Consensus        96 ~~~h~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d-~~v~iwd~  173 (342)
                      ...+.....+++|+|++..+ +++..++.+.+|+..+...  ...+.. ........++.++..++++..+ +.+.+|+.
T Consensus       111 ~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (301)
T d1l0qa2         111 TVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV--INTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDT  187 (301)
T ss_dssp             EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE--EEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             eccccccceEEEeecCCCeeeeeeccccceeeeeccccce--eeeccc-CCCceEEEeeccccceeeecccccccccccc
Confidence            44455677899999999876 5667788999999865322  111211 1122234455566667766655 56777776


Q ss_pred             CCCCCcccccccccceeeEEEEEeeCCceEEEEccCC-eEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEc
Q 019384          174 RNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEG-RVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFH  252 (342)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~-~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~s  252 (342)
                      ...... .  ..........+.+++++..++++..+. ...+++||..+.+....  +..+          ..+..++|+
T Consensus       188 ~~~~~~-~--~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~--~~~~----------~~~~~va~s  252 (301)
T d1l0qa2         188 VTNSVI-D--TVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITAR--IPVG----------PDPAGIAVT  252 (301)
T ss_dssp             TTTEEE-E--EEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEE--EECC----------SSEEEEEEC
T ss_pred             cceeee-e--cccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEE--EcCC----------CCEEEEEEe
Confidence            654211 1  112223456778899998877665432 23467799865432211  1111          136789999


Q ss_pred             CCCCeE-EEecCCCeEEEEeCCCceeeeccC
Q 019384          253 PIYGTF-ATGGCDGFVNVWDGNNKKRLYQYS  282 (342)
Q Consensus       253 p~~~~l-~sgs~Dg~I~iWd~~~~~~~~~~~  282 (342)
                      |||++| ++++.|++|++||+++++.+.++.
T Consensus       253 pdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         253 PDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            999976 688899999999999998887664

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=8.3e-20  Score=160.47  Aligned_cols=274  Identities=11%  Similarity=0.054  Sum_probs=167.5

Q ss_pred             EEEcCCCCeEEEEeCCCcEEEEECCCceeeeee--ecCCceEEEEEeCCCCe--EEEecCCcEEEEEeccCceee-c---
Q 019384           25 LRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF--MHGGPVLDCCFHDDSSG--FSASADHTVRRLVFSHGKEDI-L---   96 (342)
Q Consensus        25 l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~--~h~~~V~~~~~~~~~~~--~s~s~D~~i~~w~~~~~~~~~-~---   96 (342)
                      ++|++++++|++++.|++|.|||+.+++++.+.  .|...+.+++|+||++.  ++++.++.|.+||+.+++... +   
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            578999999999999999999999999877654  35667889999988764  355678999999999887431 1   


Q ss_pred             ---ccCCcceeEEEEeCCCCEEEEee------------CCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEE
Q 019384           97 ---GKHDAPVRCIEYSYAAGQVITGS------------WDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVV  161 (342)
Q Consensus        97 ---~~h~~~V~~~~~~~~~~~l~sgs------------~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~  161 (342)
                         ..+...+..++|+|||++++.++            .+..+.+||..++....................+.++ .+++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  160 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG-SLYV  160 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS-CEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC-EEEE
Confidence               12234567899999999887664            4678889987643221111111111112222233333 3333


Q ss_pred             EEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEcc------------------------CCeEEEEEe
Q 019384          162 ATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSV------------------------EGRVAMEFF  217 (342)
Q Consensus       162 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~------------------------~~~~~i~~~  217 (342)
                      .  +..+.+||+.+........   .......+.++|++..++....                        +....+..|
T Consensus       161 ~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         161 A--GPDIYKMDVKTGKYTVALP---LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             E--SSSEEEECTTTCCEEEEEC---STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             e--CCcceEEEccCCCEEEEEe---cCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            2  3568889987654221110   0001111222333322211111                        111123344


Q ss_pred             echhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCC
Q 019384          218 DLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDG  297 (342)
Q Consensus       218 d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg  297 (342)
                      |....... ......|         ...+..+.++|++.+++.+.. +.|++||..+++.+..+. +...+.+++|||||
T Consensus       236 ~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG  303 (346)
T d1jmxb_         236 DLKTGKTH-TQEFADL---------TELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKG  303 (346)
T ss_dssp             ETTTCCEE-EEEEEEC---------SSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSS
T ss_pred             ECCCCceE-EEEeecc---------cceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCC
Confidence            54321111 0111111         123667888999888887764 589999999998877664 34568999999999


Q ss_pred             CEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          298 RLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       298 ~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      ++|++++.++           .|.+|+.+.
T Consensus       304 ~~l~v~~~d~-----------~v~v~D~~t  322 (346)
T d1jmxb_         304 DKLYLGGTFN-----------DLAVFNPDT  322 (346)
T ss_dssp             SCEEEESBSS-----------EEEEEETTT
T ss_pred             CEEEEEeCCC-----------cEEEEECcc
Confidence            9999987654           488888764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.84  E-value=9e-20  Score=166.79  Aligned_cols=273  Identities=11%  Similarity=-0.003  Sum_probs=163.1

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeee--e----eecCCceEEEEEeCCCCe-E-EEecCCcEEEEEecc
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRG--E----FMHGGPVLDCCFHDDSSG-F-SASADHTVRRLVFSH   90 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~--~----~~h~~~V~~~~~~~~~~~-~-s~s~D~~i~~w~~~~   90 (342)
                      ...+..|+|||||++|++++.|++|++||+.+++...  .    .+|.+.+.++.|+|+++. + ++..++.+++||..+
T Consensus        61 g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~  140 (426)
T d1hzua2          61 GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  140 (426)
T ss_dssp             CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCc
Confidence            3579999999999999999999999999998765322  2    245566677778877764 3 455788999998765


Q ss_pred             Ccee-ec-------------------------------------------------------ccCCcceeEEEEeCCCCE
Q 019384           91 GKED-IL-------------------------------------------------------GKHDAPVRCIEYSYAAGQ  114 (342)
Q Consensus        91 ~~~~-~~-------------------------------------------------------~~h~~~V~~~~~~~~~~~  114 (342)
                      .... .+                                                       ..+...+..++|+|++++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  220 (426)
T d1hzua2         141 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRY  220 (426)
T ss_dssp             CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCE
T ss_pred             cceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcE
Confidence            4311 00                                                       012334556778888877


Q ss_pred             EEEee-CCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCC-eE--EEEEcCCeEEEEeCCCCCCccc-----cccc
Q 019384          115 VITGS-WDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGN-RL--VVATAGRHVNVYDLRNMSQPEQ-----RRES  185 (342)
Q Consensus       115 l~sgs-~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~-~~--~~~s~d~~v~iwd~~~~~~~~~-----~~~~  185 (342)
                      ++.+. .+..+.+||..+.............+......+..... ..  +..+.++.+.+|+.........     ....
T Consensus       221 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~  300 (426)
T d1hzua2         221 FMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ  300 (426)
T ss_dssp             EEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred             EEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEe
Confidence            65544 44567788776432211111111111122222222222 22  2234567888888765321110     0011


Q ss_pred             ccceeeEEEEEeeCCceEEEE-------ccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeE
Q 019384          186 SLKYQTRCVRCYPNGTGYALS-------SVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTF  258 (342)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~~-------s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l  258 (342)
                      .....+..++++|+++.+++.       +.++++  ++||..+......  +..+.+......+...|..++|||||+++
T Consensus       301 g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv--~vwd~~t~~~~~~--~~~~~~~~~~~~~~~rv~~~~fSpDGk~i  376 (426)
T d1hzua2         301 GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV--AVFDLKNLDAKYQ--VLPIAEWADLGEGAKRVVQPEYNKRGDEV  376 (426)
T ss_dssp             CSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCE--EEEETTCTTSCCE--EECHHHHHCCCSSCCCEEEEEECSSSSEE
T ss_pred             cCCCceeEEEcCCCCceEEEeecCCCCcccCCEE--EEEECCCCCcCeE--EeccchhcccCCCCccEEEEEECCCCCEE
Confidence            122346778999999998853       334554  5699865433221  11110000011122357889999999966


Q ss_pred             -EEe----cCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEE
Q 019384          259 -ATG----GCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLA  301 (342)
Q Consensus       259 -~sg----s~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~la  301 (342)
                       +++    +.|++|+|||.++++.+..++++.      .++|+|+|-+
T Consensus       377 ~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~  418 (426)
T d1hzua2         377 WFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFNV  418 (426)
T ss_dssp             EEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred             EEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEeE
Confidence             443    468899999999999888887764      4578888843

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=1.8e-18  Score=151.15  Aligned_cols=265  Identities=11%  Similarity=0.073  Sum_probs=163.1

Q ss_pred             CeEEEEeCCCcEEEEECCCceeeeeee---cCCceEEEEEeCCCCe--EEEecCCcEEEEEeccCcee-eccc-----CC
Q 019384           32 DHLLVSSWDKSVRLYDASANVLRGEFM---HGGPVLDCCFHDDSSG--FSASADHTVRRLVFSHGKED-ILGK-----HD  100 (342)
Q Consensus        32 ~~l~s~s~Dgti~vwd~~~~~~~~~~~---h~~~V~~~~~~~~~~~--~s~s~D~~i~~w~~~~~~~~-~~~~-----h~  100 (342)
                      ++|++++.|++|+|||+.++++...+.   +...+.+++|+|+++.  ++++.++.|.+||+.+++.. .+..     +.
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            579999999999999999988766542   3456789999988775  35567899999999988743 2222     33


Q ss_pred             cceeEEEEeCCCCEEEEee------------CCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeE
Q 019384          101 APVRCIEYSYAAGQVITGS------------WDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHV  168 (342)
Q Consensus       101 ~~V~~~~~~~~~~~l~sgs------------~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v  168 (342)
                      ..+..++|+|+++.++++.            .+..+.+||..+...  ...+.. ......+.++.++..+++++  +.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~-~~~~~~~~~s~dg~~l~~~~--~~~  156 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR--RKAFEA-PRQITMLAWARDGSKLYGLG--RDL  156 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE--EEEEEC-CSSCCCEEECTTSSCEEEES--SSE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE--EEeccc-cCCceEEEEcCCCCEEEEEc--CCc
Confidence            4567899999999988776            456788898765322  112221 12223456777777777664  457


Q ss_pred             EEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEE-ccC---------------------CeEEEEEeechhhhhcc
Q 019384          169 NVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS-SVE---------------------GRVAMEFFDLSEASQAK  226 (342)
Q Consensus       169 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-s~~---------------------~~~~i~~~d~~~~~~~~  226 (342)
                      .+||..+.+..........   .....+.+++..+... ...                     ....+..|+....... 
T Consensus       157 ~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  232 (337)
T d1pbyb_         157 HVMDPEAGTLVEDKPIQSW---EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-  232 (337)
T ss_dssp             EEEETTTTEEEEEECSTTT---TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-
T ss_pred             ceeeeecCcEEEEeecCCc---cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEE-
Confidence            8899876532111100000   0000011111111000 000                     1112233444321100 


Q ss_pred             cceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEec
Q 019384          227 KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       227 ~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~~  306 (342)
                      ...+..+         ...+..++++|++..++++  ++.|++||+++++.+..+. +...+.+++|||||++|++++.+
T Consensus       233 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~  300 (337)
T d1pbyb_         233 MREVRIM---------DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGAL  300 (337)
T ss_dssp             EEEEEEC---------SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBS
T ss_pred             EEEecCC---------CcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCC
Confidence            0001111         1135667899999888766  5899999999998887764 55678999999999999988654


Q ss_pred             cccCCCCCCCCCcEEEEEccCC
Q 019384          307 TFEEGDKPHEPDAIFVRSVNEI  328 (342)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~  328 (342)
                      .           .|.+|+.+..
T Consensus       301 ~-----------~i~v~D~~t~  311 (337)
T d1pbyb_         301 G-----------DLAAYDAETL  311 (337)
T ss_dssp             S-----------EEEEEETTTC
T ss_pred             C-----------cEEEEECCCC
Confidence            4           4888877643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2e-17  Score=144.61  Aligned_cols=281  Identities=10%  Similarity=0.034  Sum_probs=168.7

Q ss_pred             eEEEEeCCCcEEEEECCCc---eeeeeeecCCceEEEEEeCCCCeE-E-EecCCcEEEEEeccCcee-ec---ccCCcce
Q 019384           33 HLLVSSWDKSVRLYDASAN---VLRGEFMHGGPVLDCCFHDDSSGF-S-ASADHTVRRLVFSHGKED-IL---GKHDAPV  103 (342)
Q Consensus        33 ~l~s~s~Dgti~vwd~~~~---~~~~~~~h~~~V~~~~~~~~~~~~-s-~s~D~~i~~w~~~~~~~~-~~---~~h~~~V  103 (342)
                      .+++++.|++|+||++...   .++....|.+.|.+++|+|+++.+ + +..|+.|++|++...... .+   ..+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            4578889999999998643   345556799999999999888753 4 445899999999765421 22   2344567


Q ss_pred             eEEEEeCCCCEEEEeeC-CCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEc-CCeEEEEeCCCCCCccc
Q 019384          104 RCIEYSYAAGQVITGSW-DKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATA-GRHVNVYDLRNMSQPEQ  181 (342)
Q Consensus       104 ~~~~~~~~~~~l~sgs~-D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~-d~~v~iwd~~~~~~~~~  181 (342)
                      ..++|+||+++|++++. +++|++|+.......................++.+++.++.+.. +..+.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            78999999999888775 67899998654322111111111111222356777777666654 45799999876432211


Q ss_pred             cc----ccccceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC
Q 019384          182 RR----ESSLKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG  256 (342)
Q Consensus       182 ~~----~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~  256 (342)
                      ..    ..........+++++++..++... ..+...+..++...  ..... ...................++++++++
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~d~~  242 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH--GNIEC-VQTLDMMPENFSDTRWAADIHITPDGR  242 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT--SCCEE-EEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccc--cceee-eeeeeeeecCCCccccceeEEEecccC
Confidence            11    111123346788888888765554 34444443333211  11110 000000011111122356688999998


Q ss_pred             eE-EEecCCCeEEEEeCCCceee---eccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEcc
Q 019384          257 TF-ATGGCDGFVNVWDGNNKKRL---YQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       257 ~l-~sgs~Dg~I~iWd~~~~~~~---~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~  326 (342)
                      ++ +.+..++++.+|+.......   .........+.+++|||||++|+++++++          +.|.+|++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~----------~~v~v~~id  306 (333)
T d1ri6a_         243 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS----------HHISVYEIV  306 (333)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT----------CEEEEEEEE
T ss_pred             ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCC----------CeEEEEEEE
Confidence            65 55677889999987654322   22223345678999999999988876543          147777653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=2.7e-18  Score=150.08  Aligned_cols=260  Identities=10%  Similarity=0.019  Sum_probs=158.8

Q ss_pred             CCCCeEEEEEcCCCCeE-EEEeCCCcEEEEECCCceeeeee-ecC-----CceEEEEEeCCCCeE-EEe-----------
Q 019384           18 PSDGISNLRFSNHSDHL-LVSSWDKSVRLYDASANVLRGEF-MHG-----GPVLDCCFHDDSSGF-SAS-----------   78 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l-~s~s~Dgti~vwd~~~~~~~~~~-~h~-----~~V~~~~~~~~~~~~-s~s-----------   78 (342)
                      +...+.+++|+|||++| ++++.|++|++||+.+++++... .+.     ..+..++|++++..+ .+.           
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence            34567899999999987 56778999999999988765543 222     234578888776643 443           


Q ss_pred             -cCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCC------------
Q 019384           79 -ADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ------------  145 (342)
Q Consensus        79 -~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~------------  145 (342)
                       .+..+.+|+..++.......+...+.+++|+|+++++++++.  .+.+||..+..............            
T Consensus       112 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (337)
T d1pbyb_         112 VQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW  189 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCC
T ss_pred             ccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceee
Confidence             355677888887765444445567889999999999988865  46789876532111000000000            


Q ss_pred             -----CCcEEE----EeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEE
Q 019384          146 -----PERVYS----LSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEF  216 (342)
Q Consensus       146 -----~~~v~~----~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~  216 (342)
                           ......    ...........+.++.+.+||+.++....... .+......+..+.+++..++...  +.  +.+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~--i~v  264 (337)
T d1pbyb_         190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV-RIMDVFYFSTAVNPAKTRAFGAY--NV--LES  264 (337)
T ss_dssp             CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE-EECSSCEEEEEECTTSSEEEEEE--SE--EEE
T ss_pred             ccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe-cCCCcceEEEEecccceEEEEcc--cc--EEE
Confidence                 000000    00001111122233458888888764322111 12223345667788887766553  44  467


Q ss_pred             eechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC----CCCcceEEEE
Q 019384          217 FDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS----KYPTSIAALS  292 (342)
Q Consensus       217 ~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~----~~~~~V~~v~  292 (342)
                      ||...........   +         .+.+.+++|+|||++|++++.|++|+|||.++++.+.+++    +...-....-
T Consensus       265 ~d~~~~~~~~~~~---~---------~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g~~~~~~~~~~~  332 (337)
T d1pbyb_         265 FDLEKNASIKRVP---L---------PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRL  332 (337)
T ss_dssp             EETTTTEEEEEEE---C---------SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGGCCCBTCCCEE
T ss_pred             EECCCCcEEEEEc---C---------CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECCCCCccceeeeeE
Confidence            9986543322211   1         1247899999999999999999999999999988876654    2223334444


Q ss_pred             ECCC
Q 019384          293 FSRD  296 (342)
Q Consensus       293 ~spd  296 (342)
                      |++|
T Consensus       333 ~~~~  336 (337)
T d1pbyb_         333 FTRD  336 (337)
T ss_dssp             EECC
T ss_pred             EcCC
Confidence            5555

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=8e-17  Score=147.37  Aligned_cols=187  Identities=11%  Similarity=0.017  Sum_probs=127.7

Q ss_pred             eEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEecCCcEEEEEeccCcee------ecccCCcceeE
Q 019384           33 HLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKED------ILGKHDAPVRC  105 (342)
Q Consensus        33 ~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D~~i~~w~~~~~~~~------~~~~h~~~V~~  105 (342)
                      .+++.+.||+|+|||..+++++..+.....+..++|+||++. ++++.|+++++||+.+.+..      ....|...+.+
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s  113 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS  113 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence            358999999999999999988777655567999999988775 58899999999999876521      22456677788


Q ss_pred             EEEeCCCCEE-EEeeCCCcEEEEcCCCCCCcceeeeee-------cCCCCcE--EEEeccCCeE-EEEEcCCeEEEEeCC
Q 019384          106 IEYSYAAGQV-ITGSWDKSLKCWDPRGASGQERTLVGT-------YPQPERV--YSLSLVGNRL-VVATAGRHVNVYDLR  174 (342)
Q Consensus       106 ~~~~~~~~~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~-------~~~~~~v--~~~s~~~~~~-~~~s~d~~v~iwd~~  174 (342)
                      .+|+|||++| ++++.+++|++||.++...........       .......  +.++.++..+ ++...+++|.+||..
T Consensus       114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~  193 (432)
T d1qksa2         114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT  193 (432)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred             cccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEcc
Confidence            8889999976 788999999999987654321111000       0011122  2345555554 455667899999988


Q ss_pred             CCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechh
Q 019384          175 NMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSE  221 (342)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~  221 (342)
                      +.+...... .........++++|+++.+++++.++. .+.++|...
T Consensus       194 ~~~~~~~~~-i~~g~~~~~~~~spdg~~~~va~~~~~-~v~v~d~~~  238 (432)
T d1qksa2         194 DLNNLKTTE-ISAERFLHDGGLDGSHRYFITAANARN-KLVVIDTKE  238 (432)
T ss_dssp             CSSEEEEEE-EECCSSEEEEEECTTSCEEEEEEGGGT-EEEEEETTT
T ss_pred             CCCcceEEE-EcccCccccceECCCCCEEEEeccccc-eEEEeeccc
Confidence            754322111 122234568899999998877776554 344577643

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.75  E-value=6.2e-16  Score=137.58  Aligned_cols=274  Identities=12%  Similarity=0.054  Sum_probs=163.9

Q ss_pred             CCCCccCCCCCCCCeEEEEEcCCCCeEEEEe----------CCCcEEEEECCCceeeeeee-cCCce-------EEEEEe
Q 019384            8 PTSGRELGNPPSDGISNLRFSNHSDHLLVSS----------WDKSVRLYDASANVLRGEFM-HGGPV-------LDCCFH   69 (342)
Q Consensus         8 ~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s----------~Dgti~vwd~~~~~~~~~~~-h~~~V-------~~~~~~   69 (342)
                      +.+++.+...+......++|||||++|++++          .|++|+|||..+++...... +....       ..+.|+
T Consensus        54 ~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s  133 (373)
T d2madh_          54 AGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT  133 (373)
T ss_pred             CCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEE
Confidence            4566666654445555799999999998875          46889999999887665442 33222       345666


Q ss_pred             CCCC-eEEE--ecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCE-EEEeeCCCcEEEEcCCCCCCcceeeeeecC-
Q 019384           70 DDSS-GFSA--SADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ-VITGSWDKSLKCWDPRGASGQERTLVGTYP-  144 (342)
Q Consensus        70 ~~~~-~~s~--s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~-  144 (342)
                      ++++ ++..  ..++.+.+|+....+.   ..+.....++.++|+++. +++.+.|+++.+||................ 
T Consensus       134 ~dg~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~  210 (373)
T d2madh_         134 PNNADLLFFQFAAGPAVGLVVQGGSSD---DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTA  210 (373)
T ss_pred             eCCCcEEEEEEcCCCceEEeeccCCeE---EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeecccc
Confidence            5544 2333  3345667777655432   233445678899998865 478899999999998654321111111111 


Q ss_pred             -CCCcEEEEeccCC-eEEEEEcCCeEEEEeCCCCCCccccccc----------ccceeeEEEEEeeCCceEEEEccCCe-
Q 019384          145 -QPERVYSLSLVGN-RLVVATAGRHVNVYDLRNMSQPEQRRES----------SLKYQTRCVRCYPNGTGYALSSVEGR-  211 (342)
Q Consensus       145 -~~~~v~~~s~~~~-~~~~~s~d~~v~iwd~~~~~~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~s~~~~-  211 (342)
                       .......+...++ .++..+.++++.+|+.............          ........+++++++..++....++. 
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  290 (373)
T d2madh_         211 AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA  290 (373)
T ss_pred             CccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCce
Confidence             1111122333333 4566778888999988765321110000          00011223455566555443322221 


Q ss_pred             -------EEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCe--EEEecCCCeEEEEeCCCceeeeccC
Q 019384          212 -------VAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGT--FATGGCDGFVNVWDGNNKKRLYQYS  282 (342)
Q Consensus       212 -------~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~--l~sgs~Dg~I~iWd~~~~~~~~~~~  282 (342)
                             ..+.+||.........  +.          +...+..++|+|||+.  +++++.|++|+|||+.+++.++++.
T Consensus       291 ~~~~~~~~~v~~~d~~t~~~~~~--~~----------~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         291 WKLHAAAKEVTSVTGLVGQTSSQ--IS----------LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             EEeecCCCeEEEEECCCCcEEEE--ec----------CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence                   1235577644322211  11          1124788999999984  5789999999999999999999998


Q ss_pred             CCCcceEEEEECCC
Q 019384          283 KYPTSIAALSFSRD  296 (342)
Q Consensus       283 ~~~~~V~~v~~spd  296 (342)
                      ++....+.|++.++
T Consensus       359 ~~g~~P~~l~~~~~  372 (373)
T d2madh_         359 ELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCCCCcEEEEecC
Confidence            88777788887655

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=3.9e-16  Score=137.72  Aligned_cols=271  Identities=11%  Similarity=0.026  Sum_probs=163.1

Q ss_pred             CCCCccCCCCCCCCeEEEEEcCCCCeEEEE----------eCCCcEEEEECCCceeeeee-ec-------CCceEEEEEe
Q 019384            8 PTSGRELGNPPSDGISNLRFSNHSDHLLVS----------SWDKSVRLYDASANVLRGEF-MH-------GGPVLDCCFH   69 (342)
Q Consensus         8 ~~~~~~~~~~~~~~V~~l~fs~~~~~l~s~----------s~Dgti~vwd~~~~~~~~~~-~h-------~~~V~~~~~~   69 (342)
                      +.+|+.++..+...+..++|||||++|+.+          +.|++|++||..+++..... .+       ......+.|+
T Consensus        35 ~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s  114 (355)
T d2bbkh_          35 GEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT  114 (355)
T ss_dssp             TTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC
T ss_pred             CCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEe
Confidence            344555554445566689999999988764          34899999999987765443 12       1223567898


Q ss_pred             CCCCe-EEEe--cCCcEEEEEeccCcee-ecccCC-------cceeEEEEeCCCCEEEE-eeCCCcEEEEcCCCCCCcce
Q 019384           70 DDSSG-FSAS--ADHTVRRLVFSHGKED-ILGKHD-------APVRCIEYSYAAGQVIT-GSWDKSLKCWDPRGASGQER  137 (342)
Q Consensus        70 ~~~~~-~s~s--~D~~i~~w~~~~~~~~-~~~~h~-------~~V~~~~~~~~~~~l~s-gs~D~~I~iWd~~~~~~~~~  137 (342)
                      +++.. +.+.  .+..+.+|+..+++.. .+..+.       .....+.++++++.++. ...++.+.+++........ 
T Consensus       115 ~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~-  193 (355)
T d2bbkh_         115 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED-  193 (355)
T ss_dssp             TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT-
T ss_pred             cCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccccee-
Confidence            77764 4443  4567888998877632 222221       12234556666655433 3333455555543221110 


Q ss_pred             eeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCccccccc-------ccc---eeeEEEEEeeCCceEEEEc
Q 019384          138 TLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRES-------SLK---YQTRCVRCYPNGTGYALSS  207 (342)
Q Consensus       138 ~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~-------~~~---~~~~~v~~~~~~~~~~~~s  207 (342)
                            ........+...+..++.++.++++.+|++............       ...   .....+++++++..++..+
T Consensus       194 ------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~  267 (355)
T d2bbkh_         194 ------EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLV  267 (355)
T ss_dssp             ------SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             ------cceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEe
Confidence                  000111234445667888899999999999876432111100       000   1112366788887776554


Q ss_pred             cC--------CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC--eEEEecCCCeEEEEeCCCcee
Q 019384          208 VE--------GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG--TFATGGCDGFVNVWDGNNKKR  277 (342)
Q Consensus       208 ~~--------~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~--~l~sgs~Dg~I~iWd~~~~~~  277 (342)
                      .+        ....+++||.........  +..          ...+.+++|+|||+  ++++++.|++|+|||.++++.
T Consensus       268 ~~~~~~~~~~~~~~v~v~d~~t~~~~~~--~~~----------~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         268 DQRDEWRHKTASRFVVVLDAKTGERLAK--FEM----------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             EECCTTCTTSCEEEEEEEETTTCCEEEE--EEE----------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             ccCCceeecCCCCeEEEEeCCCCcEEEE--ecC----------CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence            32        234567888764432221  111          12478899999997  457788999999999999999


Q ss_pred             eeccCCCCcceEEEEECCCC
Q 019384          278 LYQYSKYPTSIAALSFSRDG  297 (342)
Q Consensus       278 ~~~~~~~~~~V~~v~~spdg  297 (342)
                      ++++.++...-..+.+.++|
T Consensus       336 ~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         336 LRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             EEEECCCCSSCCEEECCCCC
T ss_pred             EEEEeCcCCCccEEEeCCCC
Confidence            99888776655666666654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.70  E-value=2.8e-14  Score=126.63  Aligned_cols=293  Identities=12%  Similarity=0.024  Sum_probs=168.3

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEE-----eCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EEe----------c
Q 019384           16 NPPSDGISNLRFSNHSDHLLVS-----SWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SAS----------A   79 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~-----s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s----------~   79 (342)
                      ..+...+..++|+|||++++..     +.++.|.+||..+++++..+. .+....+.|+||++.+ .++          .
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~-~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN-GGFLPNPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe-CCCCccEEEcCCCCEEEEEeecCCccccccc
Confidence            4567788999999999998653     345679999999888776542 2333478999887654 443          3


Q ss_pred             CCcEEEEEeccCcee-ecccCCcc-------eeEEEEeCCCCEEEEee--CCCcEEEEcCCCCCCcceeeeeecCCCCcE
Q 019384           80 DHTVRRLVFSHGKED-ILGKHDAP-------VRCIEYSYAAGQVITGS--WDKSLKCWDPRGASGQERTLVGTYPQPERV  149 (342)
Q Consensus        80 D~~i~~w~~~~~~~~-~~~~h~~~-------V~~~~~~~~~~~l~sgs--~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v  149 (342)
                      ++.+++||..+++.. .+..+...       ...+.|+++++.++...  .++.+.+|+.....     ....... ...
T Consensus        96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~  169 (373)
T d2madh_          96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS-----DDQLLSS-PTC  169 (373)
T ss_pred             ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe-----EEEEecc-cee
Confidence            577999999988743 22223222       24578889888765543  45678899875421     1121111 223


Q ss_pred             EEEeccCC-eEEEEEcCCeEEEEeCCCCCCccccccc--cc--ceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhh
Q 019384          150 YSLSLVGN-RLVVATAGRHVNVYDLRNMSQPEQRRES--SL--KYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQ  224 (342)
Q Consensus       150 ~~~s~~~~-~~~~~s~d~~v~iwd~~~~~~~~~~~~~--~~--~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~  224 (342)
                      ..++.+++ .+++.+.|+.+.+||.............  ..  ......+...+++. ++..+.++.+.  +|+......
T Consensus       170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~--~~~~~~~~~  246 (373)
T d2madh_         170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKIL--QADISAAGA  246 (373)
T ss_pred             EEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEE--EEEcCCCeE
Confidence            44666665 4577889999999998775432211110  00  01112233344433 34444555443  355432211


Q ss_pred             cccceeeeEEecCCC-CceeeeeeEEEEcCCCCe----------EEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEE
Q 019384          225 AKKYAFKCHRKSEAG-RDIVYPVNAIAFHPIYGT----------FATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSF  293 (342)
Q Consensus       225 ~~~~~~~~h~~~~~~-~~~~~~v~~v~~sp~~~~----------l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~  293 (342)
                      ........+...... .........++++|++..          +++...++++.+||..+++.+..+. +...+.+++|
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~  325 (373)
T d2madh_         247 TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISV  325 (373)
T ss_pred             EEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEE
Confidence            111101000000000 000001233455555543          4556677899999999998887664 5567899999


Q ss_pred             CCCCCEE--EEEEeccccCCCCCCCCCcEEEEEccCCcc
Q 019384          294 SRDGRLL--AVASSYTFEEGDKPHEPDAIFVRSVNEIEV  330 (342)
Q Consensus       294 spdg~~l--as~s~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (342)
                      ||||+.+  ++++.+.           .|.+|++..+..
T Consensus       326 spDG~~~l~vt~~~d~-----------~v~v~D~~tg~~  353 (373)
T d2madh_         326 AQDGGPDLYALSAGTE-----------VLHIYDAGAGDQ  353 (373)
T ss_pred             CCCCCEEEEEEeCCCC-----------eEEEEECCCCCE
Confidence            9999954  4444333           477777765444

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.69  E-value=1.3e-15  Score=133.17  Aligned_cols=245  Identities=10%  Similarity=0.018  Sum_probs=146.9

Q ss_pred             CCCCCeEEEEEcCCCCeE-EEEeCCCcEEEEECCCceeeeeeecC-------CceEEEEEeCCCCeE-EEe---------
Q 019384           17 PPSDGISNLRFSNHSDHL-LVSSWDKSVRLYDASANVLRGEFMHG-------GPVLDCCFHDDSSGF-SAS---------   78 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l-~s~s~Dgti~vwd~~~~~~~~~~~h~-------~~V~~~~~~~~~~~~-s~s---------   78 (342)
                      ++..++.+++|+|||+++ ++++.|++|++||+.+++........       ..+..+.|+++++.+ .++         
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~  116 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH  116 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeee
Confidence            456678999999999987 56678999999999988765443221       235678898877654 333         


Q ss_pred             ---cCCcEEEEEeccCcee-eccc--CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCC-------
Q 019384           79 ---ADHTVRRLVFSHGKED-ILGK--HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ-------  145 (342)
Q Consensus        79 ---~D~~i~~w~~~~~~~~-~~~~--h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~-------  145 (342)
                         .+..+.+|+..++... .+..  ....+..+.+++++..++++   ..+.+||+.+....  ..+.....       
T Consensus       117 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  191 (346)
T d1jmxb_         117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYT--VALPLRNWNRKGYSA  191 (346)
T ss_dssp             EEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEE--EEECSTTCCCTTBCC
T ss_pred             eccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCCEE--EEEecCCCccceEEe
Confidence               3566788887776532 2221  22345566677666555543   45888987643221  11110000       


Q ss_pred             ------------CCcEEE--Ee--c--cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEc
Q 019384          146 ------------PERVYS--LS--L--VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSS  207 (342)
Q Consensus       146 ------------~~~v~~--~s--~--~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s  207 (342)
                                  ...+..  ..  .  ....+.++..+..+.+||+.+........ .........+.+++++..++...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  270 (346)
T d1jmxb_         192 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF-ADLTELYFTGLRSPKDPNQIYGV  270 (346)
T ss_dssp             CBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE-EECSSCEEEEEECSSCTTEEEEE
T ss_pred             ccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEe-ecccceeEEEEEeCCCCEEEEec
Confidence                        000000  00  0  01122334445568889987754322111 12222345566778877776665


Q ss_pred             cCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC
Q 019384          208 VEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS  282 (342)
Q Consensus       208 ~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~  282 (342)
                      .+ .  +.+||....+.....  .          ..+.+.+++|+|||++|++++.|++|++||.++++.+.++.
T Consensus       271 ~~-~--v~v~d~~~~~~~~~~--~----------~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         271 LN-R--LAKYDLKQRKLIKAA--N----------LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             ES-E--EEEEETTTTEEEEEE--E----------CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             CC-e--EEEEECCCCcEEEEE--c----------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence            43 3  467988543222111  1          01247899999999999999999999999999999887765

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=5.7e-14  Score=122.16  Aligned_cols=251  Identities=10%  Similarity=0.033  Sum_probs=149.4

Q ss_pred             CCCCCeEEEEEcCCCCeEEE-EeCCCcEEEEECCCce----eeeeeecCCceEEEEEeCCCCe-EEEe-cCCcEEEEEec
Q 019384           17 PPSDGISNLRFSNHSDHLLV-SSWDKSVRLYDASANV----LRGEFMHGGPVLDCCFHDDSSG-FSAS-ADHTVRRLVFS   89 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s-~s~Dgti~vwd~~~~~----~~~~~~h~~~V~~~~~~~~~~~-~s~s-~D~~i~~w~~~   89 (342)
                      .+...|..|+|||||++|++ +..|++|++|++....    ......+...+..++|+++++. ++++ .++.+.+|+..
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence            56788999999999999855 4568999999986532    2233345566788999988764 5655 46678888877


Q ss_pred             cCcee---ecccCCcceeEEEEeCCCCEEEEeeCC-CcEEEEcCCCCCCcceeeee--ecCCCC--cEEEEeccCCeEEE
Q 019384           90 HGKED---ILGKHDAPVRCIEYSYAAGQVITGSWD-KSLKCWDPRGASGQERTLVG--TYPQPE--RVYSLSLVGNRLVV  161 (342)
Q Consensus        90 ~~~~~---~~~~h~~~V~~~~~~~~~~~l~sgs~D-~~I~iWd~~~~~~~~~~~~~--~~~~~~--~v~~~s~~~~~~~~  161 (342)
                      .....   ....+...+.++.++|+++.++.++.+ ..|.+|+.............  ......  ....++.++..++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~  193 (333)
T d1ri6a_         114 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC  193 (333)
T ss_dssp             TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred             cccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEe
Confidence            66532   234566778899999999988776644 57999997643321111111  111111  22344445554443


Q ss_pred             E-EcCCeEEEEeCCCCCCcccc--c--c----cccceeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhcccceee
Q 019384          162 A-TAGRHVNVYDLRNMSQPEQR--R--E----SSLKYQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQAKKYAFK  231 (342)
Q Consensus       162 ~-s~d~~v~iwd~~~~~~~~~~--~--~----~~~~~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~~~~~~~  231 (342)
                      . ...+...+|++.........  .  .    .........++++++++.++.. ...+.+.+  |+.......  ..+.
T Consensus       194 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~  269 (333)
T d1ri6a_         194 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV--FSVSEDGSV--LSKE  269 (333)
T ss_dssp             EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE--EEECTTSCC--EEEE
T ss_pred             eccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEE--EEEcCCCCE--EEEE
Confidence            3 44556777776543211100  0  0    0011223456788888866554 44555544  555332221  1222


Q ss_pred             eEEecCCCCceeeeeeEEEEcCCCCeEEEe-cCCCeEEEEe--CCCcee
Q 019384          232 CHRKSEAGRDIVYPVNAIAFHPIYGTFATG-GCDGFVNVWD--GNNKKR  277 (342)
Q Consensus       232 ~h~~~~~~~~~~~~v~~v~~sp~~~~l~sg-s~Dg~I~iWd--~~~~~~  277 (342)
                      .+....      ..+..++|+|||++|+++ +.+++|++|+  .+++++
T Consensus       270 ~~~~~~------~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         270 GFQPTE------TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEEECS------SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EEeCCC------CCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            222211      135679999999987655 5678999994  556543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=1.5e-14  Score=127.28  Aligned_cols=286  Identities=13%  Similarity=0.069  Sum_probs=161.6

Q ss_pred             EEEcCCCCeEEEE-----eCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEE----------ecCCcEEEEEe
Q 019384           25 LRFSNHSDHLLVS-----SWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSA----------SADHTVRRLVF   88 (342)
Q Consensus        25 l~fs~~~~~l~s~-----s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~----------s~D~~i~~w~~   88 (342)
                      .+.+||+++++..     +.+++|.+||..+++++.+. +.+....++|+|+++. +.+          ..|+.|++||.
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~-~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~   85 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI-DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP   85 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE-EECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE-ECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence            3568999998764     35678999999998866654 2334447899988764 333          34788999999


Q ss_pred             ccCcee-ecc---c----CCcceeEEEEeCCCCEEEEe--eCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCe
Q 019384           89 SHGKED-ILG---K----HDAPVRCIEYSYAAGQVITG--SWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNR  158 (342)
Q Consensus        89 ~~~~~~-~~~---~----h~~~V~~~~~~~~~~~l~sg--s~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~  158 (342)
                      .+++.. .+.   .    .......++|+++++.++.+  +.+..+.+||..+...     ................+..
T Consensus        86 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  160 (355)
T d2bbkh_          86 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-----KRMLDVPDCYHIFPTAPDT  160 (355)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE-----EEEEECCSEEEEEEEETTE
T ss_pred             CCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE-----eeEEecCCcceEeecCCcc
Confidence            887732 111   1    12234568999999987655  4567899999875422     1111111222222223334


Q ss_pred             EEEEEcCCeEEEEeCCCCCCccccc----ccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEE
Q 019384          159 LVVATAGRHVNVYDLRNMSQPEQRR----ESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHR  234 (342)
Q Consensus       159 ~~~~s~d~~v~iwd~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~  234 (342)
                      .+..+.|++..++............    .......+....+.+++..++..+.++.+  ++|+..............+.
T Consensus       161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~  238 (355)
T d2bbkh_         161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKI--HQIDLSSGDAKFLPAVEALT  238 (355)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEE--EEEECTTSSCEECCCEESSC
T ss_pred             eEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeE--EEEecCCCcEEEEeccCCcc
Confidence            4455555555554443321110000    00011112334566677777777878765  45776543211111111110


Q ss_pred             ecC-CCCceeeeeeEEEEcCCCCeEEEecCC----------CeEEEEeCCCceeeeccCCCCcceEEEEECCCCCE-EEE
Q 019384          235 KSE-AGRDIVYPVNAIAFHPIYGTFATGGCD----------GFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRL-LAV  302 (342)
Q Consensus       235 ~~~-~~~~~~~~v~~v~~sp~~~~l~sgs~D----------g~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~-las  302 (342)
                      ... ...........++++|++..++..+.+          .+|.+||..+++.+..+. +...+.+++|||||+. |++
T Consensus       239 ~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v  317 (355)
T d2bbkh_         239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYA  317 (355)
T ss_dssp             HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEE
T ss_pred             cceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEE
Confidence            000 000001123458899999887665432          479999999988877665 3356899999999984 333


Q ss_pred             EEeccccCCCCCCCCCcEEEEEccCCc
Q 019384          303 ASSYTFEEGDKPHEPDAIFVRSVNEIE  329 (342)
Q Consensus       303 ~s~~~~~~~~~~~~~~~~~~~~~~~~~  329 (342)
                      ++..+   +       .|.+|+++.+.
T Consensus       318 ~~~~d---~-------~i~v~D~~tg~  334 (355)
T d2bbkh_         318 LSTGD---K-------TLYIHDAESGE  334 (355)
T ss_dssp             EETTT---T-------EEEEEETTTCC
T ss_pred             EECCC---C-------EEEEEECCCCC
Confidence            33322   1       47777766443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.52  E-value=1.2e-12  Score=120.14  Aligned_cols=113  Identities=8%  Similarity=0.011  Sum_probs=87.7

Q ss_pred             CCCCCCeEEEEEcCCCCeEEEEeC---------CCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEE
Q 019384           16 NPPSDGISNLRFSNHSDHLLVSSW---------DKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRL   86 (342)
Q Consensus        16 ~~~~~~V~~l~fs~~~~~l~s~s~---------Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w   86 (342)
                      +.+...|.+++|||||++||.++.         ++.+.|||+.++.+.....|.+.+..+.|+|+++.+.-..++.+.+|
T Consensus        58 ~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~  137 (470)
T d2bgra1          58 DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVK  137 (470)
T ss_dssp             TTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEE
T ss_pred             hhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEeecccceEE
Confidence            455678999999999999998753         57889999999988777788999999999999988777788899999


Q ss_pred             EeccCceeecc-c------------------CCcceeEEEEeCCCCEEEEeeCCCc-EEEEc
Q 019384           87 VFSHGKEDILG-K------------------HDAPVRCIEYSYAAGQVITGSWDKS-LKCWD  128 (342)
Q Consensus        87 ~~~~~~~~~~~-~------------------h~~~V~~~~~~~~~~~l~sgs~D~~-I~iWd  128 (342)
                      +..++....+. .                  ..+....+.|+|||+.|+....|.+ ++.|+
T Consensus       138 ~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             ECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEE
Confidence            88777633211 1                  2233456889999999998877654 55443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=1e-12  Score=116.68  Aligned_cols=260  Identities=12%  Similarity=0.030  Sum_probs=145.6

Q ss_pred             CCCccCCCCCCCCeEEEEEcCCCCeEEEEe----------CCCcEEEEECCCceeeeee-ecC-------CceEEEEEeC
Q 019384            9 TSGRELGNPPSDGISNLRFSNHSDHLLVSS----------WDKSVRLYDASANVLRGEF-MHG-------GPVLDCCFHD   70 (342)
Q Consensus         9 ~~~~~~~~~~~~~V~~l~fs~~~~~l~s~s----------~Dgti~vwd~~~~~~~~~~-~h~-------~~V~~~~~~~   70 (342)
                      .+++-++..+......++|+|||+.|+.++          .|++|++||..+++..... .+.       .....++|++
T Consensus        54 ~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp  133 (368)
T d1mdah_          54 GCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA  133 (368)
T ss_dssp             TTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred             CCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC
Confidence            344444433333345689999999988754          4789999999887755443 221       2234688998


Q ss_pred             CCCe-EEEe-cCCcEEEEEeccCcee-ecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeee-c-CC
Q 019384           71 DSSG-FSAS-ADHTVRRLVFSHGKED-ILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGT-Y-PQ  145 (342)
Q Consensus        71 ~~~~-~s~s-~D~~i~~w~~~~~~~~-~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~-~-~~  145 (342)
                      |++. +.+. .++.+.+||+.+++.. .+..+.....   +......++..+.|+++.+|++............. . ..
T Consensus       134 DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~  210 (368)
T d1mdah_         134 SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ  210 (368)
T ss_dssp             TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccc
Confidence            7764 4554 5789999999988742 2332322211   11123466777888888888765432211000000 0 00


Q ss_pred             CCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccc----------cccccceeeEEEEEeeCCceEEEEccC------
Q 019384          146 PERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQR----------RESSLKYQTRCVRCYPNGTGYALSSVE------  209 (342)
Q Consensus       146 ~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~s~~------  209 (342)
                      ...........+..+....++.+.++++.........          ...........+++++++..+++...+      
T Consensus       211 ~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~  290 (368)
T d1mdah_         211 NCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL  290 (368)
T ss_dssp             CBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred             ccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceee
Confidence            0111112223333344445555666665443221100          000000112246677887766554322      


Q ss_pred             -CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCe--EEEecCCCeEEEEeCCCceeeeccCC
Q 019384          210 -GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGT--FATGGCDGFVNVWDGNNKKRLYQYSK  283 (342)
Q Consensus       210 -~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~--l~sgs~Dg~I~iWd~~~~~~~~~~~~  283 (342)
                       ....+++||....+......            ....+.+++|+|||+.  ++++..|++|++||..+++.+.++..
T Consensus       291 ~~~~~v~v~D~~t~~~~~~~~------------~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         291 AAAENTSSVTASVGQTSGPIS------------NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             SCEEEEEEEESSSCCEEECCE------------EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             cCCceEEEEECCCCcEeEEec------------CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence             22456778876543222221            1235788999999973  57888999999999999998887763

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.38  E-value=4.4e-12  Score=112.49  Aligned_cols=270  Identities=11%  Similarity=-0.049  Sum_probs=143.5

Q ss_pred             CCCeEEEEEcCCCCeE---EEEeCCCc--EEEEECCCceeeeeeecCCceEEEEEeCCCCeE-EEe----------cCCc
Q 019384           19 SDGISNLRFSNHSDHL---LVSSWDKS--VRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF-SAS----------ADHT   82 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l---~s~s~Dgt--i~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~-s~s----------~D~~   82 (342)
                      ......++..++++..   +++..+++  +.+||..+++++....... ...+.|+++++.+ .++          .|+.
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~   97 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LSLAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TCEEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC-CCcceECCCCCEEEEEcccCccccccccCCe
Confidence            3344555667888753   23445555  5566888887766543222 2357898887654 332          3667


Q ss_pred             EEEEEeccCcee-eccc-------CCcceeEEEEeCCCCEEEEee-CCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEe
Q 019384           83 VRRLVFSHGKED-ILGK-------HDAPVRCIEYSYAAGQVITGS-WDKSLKCWDPRGASGQERTLVGTYPQPERVYSLS  153 (342)
Q Consensus        83 i~~w~~~~~~~~-~~~~-------h~~~V~~~~~~~~~~~l~sgs-~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s  153 (342)
                      |++||..+.+.. .+..       .......++|+|||++|+.+. .++.|.+||+.+....  ..+.   .+.......
T Consensus        98 v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~--~~~~---~~~~~~~~~  172 (368)
T d1mdah_          98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD--QLTK---SASCFHIHP  172 (368)
T ss_dssp             EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEE--EEEE---CSSCCCCEE
T ss_pred             EEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEe--EEee---ccCcceEcc
Confidence            999999887642 1221       122345689999999887765 5789999998754321  1111   111111111


Q ss_pred             ccCCeEEEEEcCCeEEEEeCCCCCCcccccc----cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccce
Q 019384          154 LVGNRLVVATAGRHVNVYDLRNMSQPEQRRE----SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYA  229 (342)
Q Consensus       154 ~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~  229 (342)
                      .....++..+.|+++.++++...........    .........+...+++..+  ...++.+.+  ++...........
T Consensus       173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~v~~--~~~~~~~~~~~~~  248 (368)
T d1mdah_         173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV--WAVASSILQ--GDIPAAGATMKAA  248 (368)
T ss_dssp             EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE--ECBSSCCEE--EECCSSCCEEECC
T ss_pred             CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEE--EecCCCEEE--EeecCCceEEEee
Confidence            2234566678888888888765432211000    0111112233344444332  233333322  3322111100000


Q ss_pred             eeeEEecC-CCCceeeeeeEEEEcCCCCeEEEecC---------CCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCE
Q 019384          230 FKCHRKSE-AGRDIVYPVNAIAFHPIYGTFATGGC---------DGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRL  299 (342)
Q Consensus       230 ~~~h~~~~-~~~~~~~~v~~v~~sp~~~~l~sgs~---------Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~  299 (342)
                      ...+.... ...........++++|++..++....         ..+|.+||..+++.+.++. +...+.+++|||||+.
T Consensus       249 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~  327 (368)
T d1mdah_         249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGAS  327 (368)
T ss_dssp             CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSC
T ss_pred             cccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCE
Confidence            00000000 00000012345789999887655422         2369999999998887765 3457899999999984

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.28  E-value=3e-12  Score=115.15  Aligned_cols=272  Identities=10%  Similarity=0.010  Sum_probs=156.4

Q ss_pred             CCCeEEEEEcCCCCeEE-EEeCCCcEEEEECCCceeee--eeecCCceEEEEEeCCCC-e-EEEecCCcE----------
Q 019384           19 SDGISNLRFSNHSDHLL-VSSWDKSVRLYDASANVLRG--EFMHGGPVLDCCFHDDSS-G-FSASADHTV----------   83 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~-s~s~Dgti~vwd~~~~~~~~--~~~h~~~V~~~~~~~~~~-~-~s~s~D~~i----------   83 (342)
                      .-......++|||++|. +...+++|.++|+.+.+...  ...+...+..++|+++++ . +.+..+..+          
T Consensus        71 hP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~  150 (441)
T d1qnia2          71 HPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFS  150 (441)
T ss_dssp             CCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCC
T ss_pred             CCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccc
Confidence            33455566689999885 55688999999999887544  334677899999986554 3 444444333          


Q ss_pred             --------EEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCC-cEEEEcCCCCCCcceeeeeecCCCCcEEEEec
Q 019384           84 --------RRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDK-SLKCWDPRGASGQERTLVGTYPQPERVYSLSL  154 (342)
Q Consensus        84 --------~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~-~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~  154 (342)
                              ..+|..+.+......-......++|+|+|+.+++.+.+. .+..+|..+....  ..+..... .....+..
T Consensus       151 ~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~--d~i~v~n~-p~~~~~~~  227 (441)
T d1qnia2         151 LDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDR--DWVVVFNV-ERIAAAVK  227 (441)
T ss_dssp             GGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSB--CEEEEEEH-HHHHHHHH
T ss_pred             cccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceE--EEEEeCCc-cceEEEec
Confidence                    224444433211111123467899999999887776653 3333343221111  00100000 01112333


Q ss_pred             cCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEE-EccCCeEEEEEeechhhhhcc------c
Q 019384          155 VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYAL-SSVEGRVAMEFFDLSEASQAK------K  227 (342)
Q Consensus       155 ~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~s~~~~~~i~~~d~~~~~~~~------~  227 (342)
                      +++.+. ...++.+.+++.........   .+.......+.++|||+++++ +..++++.  +||+.......      .
T Consensus       228 dGk~~~-v~~~~v~vvd~~~~~~v~~~---IPvgksPhGv~vSPDGkyl~~~~~~~~tvs--v~d~~k~~~~~~~~~~~~  301 (441)
T d1qnia2         228 AGNFKT-IGDSKVPVVDGRGESEFTRY---IPVPKNPHGLNTSPDGKYFIANGKLSPTVS--VIAIDKLDDLFEDKIELR  301 (441)
T ss_dssp             TTCCBC-CTTCCCCEEECSSSCSSEEE---ECCBSSCCCEEECTTSCEEEEECTTSSBEE--EEEGGGHHHHTTTSSCGG
T ss_pred             CCCEEE-eCCCCcEEEEcccCCceEEE---EeCCCCccCceECCCCCEEEEeCCcCCcEE--EEEeehhhhHhhccCCcc
Confidence            454433 33455666666544322211   122233456789999998755 45677765  58875432211      1


Q ss_pred             ceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCC---------c-eeeec-----cCCCCcceEEEE
Q 019384          228 YAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNN---------K-KRLYQ-----YSKYPTSIAALS  292 (342)
Q Consensus       228 ~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~---------~-~~~~~-----~~~~~~~V~~v~  292 (342)
                      ..+.++...  +.   + ..-.+|.++|..+.+...|.+|..|++..         . ..+..     ..+|...+.+.+
T Consensus       302 ~~~~~~~~~--gl---g-plh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t  375 (441)
T d1qnia2         302 DTIVAEPEL--GL---G-PLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTES  375 (441)
T ss_dssp             GGEEECCBC--CS---C-EEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTS
T ss_pred             eEEEeeccc--cc---C-cccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccc
Confidence            122222211  11   1 23358999999999999999999999641         1 12222     258888899999


Q ss_pred             ECCCCCEEEEEEe
Q 019384          293 FSRDGRLLAVASS  305 (342)
Q Consensus       293 ~spdg~~las~s~  305 (342)
                      |+|||+||++++.
T Consensus       376 ~~pdGk~l~s~~k  388 (441)
T d1qnia2         376 RDADGKWLVVLSK  388 (441)
T ss_dssp             TTCCCCEEEEEES
T ss_pred             cCCCCcEEEecCc
Confidence            9999999999965

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.19  E-value=4.4e-09  Score=95.80  Aligned_cols=145  Identities=10%  Similarity=0.018  Sum_probs=102.7

Q ss_pred             EEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeee------ecCCceEEEEEeCCCCeE-EEe---------cCCcEEEE
Q 019384           23 SNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEF------MHGGPVLDCCFHDDSSGF-SAS---------ADHTVRRL   86 (342)
Q Consensus        23 ~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~------~h~~~V~~~~~~~~~~~~-s~s---------~D~~i~~w   86 (342)
                      .++.|.+++.++..  .|+.+.+||+.+++...++      .|...|.++.|+||++.+ .++         .++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            46889999987754  5889999999987654333      355789999999988754 443         24567899


Q ss_pred             EeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeee-----------------cCCCCcE
Q 019384           87 VFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGT-----------------YPQPERV  149 (342)
Q Consensus        87 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~-----------------~~~~~~v  149 (342)
                      |+.++....+..|...+..+.|+|||+.||.. .|+.+.+|+..++.... .....                 .......
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~-~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1          98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             ECCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCceee-eeeccCCCcccccccceeeeeeecCCccc
Confidence            99998887888899999999999999999885 57789999987543211 11000                 0011233


Q ss_pred             EEEeccCCeEEEEEcCCe-EEEE
Q 019384          150 YSLSLVGNRLVVATAGRH-VNVY  171 (342)
Q Consensus       150 ~~~s~~~~~~~~~s~d~~-v~iw  171 (342)
                      ..++++++.++....|.+ +..|
T Consensus       176 ~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         176 LWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             EEECTTSSEEEEEEEECTTCCEE
T ss_pred             cEECCCCCccceeEecCCcCceE
Confidence            457888888888776543 4433

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.08  E-value=3.1e-07  Score=78.38  Aligned_cols=231  Identities=10%  Similarity=0.008  Sum_probs=138.0

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEE-ecCCcEEEEEeccCc--eeec
Q 019384           20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSA-SADHTVRRLVFSHGK--EDIL   96 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~-s~D~~i~~w~~~~~~--~~~~   96 (342)
                      ..+..++++|||++++|...+++|..||... +........+.+.+++|.+++.++.+ ..++.+..++.....  ...+
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            4688999999999999999999999998664 34444556788999999988877654 456677777765443  2222


Q ss_pred             --ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeec--------CCCCcEEEEeccCCeEEEEEcCC
Q 019384           97 --GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTY--------PQPERVYSLSLVGNRLVVATAGR  166 (342)
Q Consensus        97 --~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~--------~~~~~v~~~s~~~~~~~~~s~d~  166 (342)
                        .......+.+++.+++..+++-+.++.|..+|.......  ......        ........++.+++.+.      
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~------  178 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS--IWLEHPMLARSNSESVFPAANGLKRFGNFLY------  178 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE--EEEECGGGSCSSTTCCSCSEEEEEEETTEEE------
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcce--eEecCCccceeeccCcccccccccccCCcee------
Confidence              223456788999999888888788888888886543210  000000        00011122222222221      


Q ss_pred             eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384          167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV  246 (342)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v  246 (342)
                                                           ++.+..+.  ++.++................         ...
T Consensus       179 -------------------------------------~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~---------~~p  210 (302)
T d2p4oa1         179 -------------------------------------VSNTEKML--LLRIPVDSTDKPGEPEIFVEQ---------TNI  210 (302)
T ss_dssp             -------------------------------------EEETTTTE--EEEEEBCTTSCBCCCEEEEES---------CCC
T ss_pred             -------------------------------------eecCCCCe--EEeccccccccccccccccCC---------CCC
Confidence                                                 22222222  122333221111110000000         124


Q ss_pred             eEEEEcCCCCeEEEecCCCeEEEEeCCCce-eeeccCCCCcceEEEEE---CCCCCEEEEEEecc
Q 019384          247 NAIAFHPIYGTFATGGCDGFVNVWDGNNKK-RLYQYSKYPTSIAALSF---SRDGRLLAVASSYT  307 (342)
Q Consensus       247 ~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~-~~~~~~~~~~~V~~v~~---spdg~~las~s~~~  307 (342)
                      ..++|.++|..+++...+++|..++..... .+...........+++|   +||++.|-+++...
T Consensus       211 dgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         211 DDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             SSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             cceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCCC
Confidence            568999999988888889999999876543 23444434456799999   78999776666543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=2.5e-07  Score=77.07  Aligned_cols=236  Identities=11%  Similarity=0.032  Sum_probs=133.1

Q ss_pred             cEEEEECCCceeeeeeecCCceEEEEEeCCCCeEE--EecCCc--EEEEEeccCceeecccCCcceeEEEEeCCCCEEEE
Q 019384           42 SVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFS--ASADHT--VRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVIT  117 (342)
Q Consensus        42 ti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s--~s~D~~--i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s  117 (342)
                      .|.|-|..+...+....+.+.+..-+|+||++.+.  ....+.  +...+...+....+..+........|+|+++.++.
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~   99 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF   99 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeE
Confidence            57777777666666666778888999999887653  222332  44445555556666677788899999999998876


Q ss_pred             eeCC-CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEE-EcCC--eEEEEeCCCCCCcccccccccceeeEE
Q 019384          118 GSWD-KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVA-TAGR--HVNVYDLRNMSQPEQRRESSLKYQTRC  193 (342)
Q Consensus       118 gs~D-~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~-s~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~  193 (342)
                      .+.. +...++......... ...............+..++.++.. ..++  .|.+.++........   .........
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~---~~~~~~~~~  175 (269)
T d2hqsa1         100 ALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI---TWEGSQNQD  175 (269)
T ss_dssp             EECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC---CCSSSEEEE
T ss_pred             eeecCCccceeecccccccc-eeeeeccccccccccccccccceecccccCCceEeeeecccccceee---ecccccccc
Confidence            5443 333333221111111 1111111111222344445544433 3344  355556654322111   111223445


Q ss_pred             EEEeeCCceEEEEcc-CCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecC---CCeEEE
Q 019384          194 VRCYPNGTGYALSSV-EGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGC---DGFVNV  269 (342)
Q Consensus       194 v~~~~~~~~~~~~s~-~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~---Dg~I~i  269 (342)
                      ..++|+++.++..+. .+...+.+.+......  .  +..+         .+......|||||+.|+-.+.   ...|++
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~--~~~~---------~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~  242 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--Q--VLSS---------TFLDETPSLAPNGTMVIYSSSQGMGSVLNL  242 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCE--E--ECCC---------SSSCEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred             cccccccceeEEEeecCCceeeeEeecccccc--e--Eeec---------CccccceEECCCCCEEEEEEcCCCCcEEEE
Confidence            678999988776654 4455555566532211  1  1100         012345689999998864433   447899


Q ss_pred             EeCCCceeeeccCCCCcceEEEEECC
Q 019384          270 WDGNNKKRLYQYSKYPTSIAALSFSR  295 (342)
Q Consensus       270 Wd~~~~~~~~~~~~~~~~V~~v~~sp  295 (342)
                      +++..+. ..++....+.+...+|||
T Consensus       243 ~~~dg~~-~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         243 VSTDGRF-KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EETTSCC-EEECCCSSSEEEEEEECC
T ss_pred             EECCCCC-EEEEeCCCCcEEeEEeCC
Confidence            9998654 445666677889999999

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.77  E-value=1.1e-05  Score=70.39  Aligned_cols=283  Identities=10%  Similarity=0.047  Sum_probs=138.6

Q ss_pred             eEEEEeC--CCcEEEEEC--CCceee----eeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCce-eecc--cCCc
Q 019384           33 HLLVSSW--DKSVRLYDA--SANVLR----GEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKE-DILG--KHDA  101 (342)
Q Consensus        33 ~l~s~s~--Dgti~vwd~--~~~~~~----~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~~-~~~~--~h~~  101 (342)
                      +|+.|.+  ++.|.++..  +++++.    ........+..++|+++++.+-+...+.+..|.+..... ....  ....
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~   83 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCC
Confidence            3555654  445655444  333321    112245556779999887765444556677776654331 1111  1122


Q ss_pred             ceeEEEEeCCCCE--EEEee-CCCcEEEEcCCCCC-----------Ccceeeeee--cC--CCCcEEEEeccCCeEEEEE
Q 019384          102 PVRCIEYSYAAGQ--VITGS-WDKSLKCWDPRGAS-----------GQERTLVGT--YP--QPERVYSLSLVGNRLVVAT  163 (342)
Q Consensus       102 ~V~~~~~~~~~~~--l~sgs-~D~~I~iWd~~~~~-----------~~~~~~~~~--~~--~~~~v~~~s~~~~~~~~~s  163 (342)
                      ....++++++++.  +++.. ..++|..+.+....           .........  ..  .....+.+++++++++++.
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d  163 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence            3445566777763  33322 22344443321100           000000100  00  0111345666777777665


Q ss_pred             cC-CeEEEEeCCCCCCcccc---cccccceeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhcccceeeeEEecC-
Q 019384          164 AG-RHVNVYDLRNMSQPEQR---RESSLKYQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQAKKYAFKCHRKSE-  237 (342)
Q Consensus       164 ~d-~~v~iwd~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~-  237 (342)
                      .+ ..|.+|+..........   ...........+.++|+++.+.+. ..++++.  .|+................... 
T Consensus       164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~--v~~~~~~~~~~~~~~~~~~~~~~  241 (365)
T d1jofa_         164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRIC--EYVIDPATHMPVYTHHSFPLIPP  241 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEE--EEEECTTTCCEEEEEEEEESSCT
T ss_pred             CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEE--EEEecCCCceEEEEeeeeccccc
Confidence            43 47888876543221110   011112346778899999977554 4556554  4666433222111111111000 


Q ss_pred             -------CCCceeeeeeEEEEcCCCCeEEEec------CCCeEEEEeCCCceee------eccCCCCcceEEEEECC-CC
Q 019384          238 -------AGRDIVYPVNAIAFHPIYGTFATGG------CDGFVNVWDGNNKKRL------YQYSKYPTSIAALSFSR-DG  297 (342)
Q Consensus       238 -------~~~~~~~~v~~v~~sp~~~~l~sgs------~Dg~I~iWd~~~~~~~------~~~~~~~~~V~~v~~sp-dg  297 (342)
                             ...........+.++|+|++|+++.      ..+.|..|+......+      .........-.+++|+| ||
T Consensus       242 ~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G  321 (365)
T d1jofa_         242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred             cccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCC
Confidence                   0011112355789999999987652      2234777776542211      11122334567899998 89


Q ss_pred             CEEEEEEeccccCCCCCCCCCcEEEEEccC
Q 019384          298 RLLAVASSYTFEEGDKPHEPDAIFVRSVNE  327 (342)
Q Consensus       298 ~~las~s~~~~~~~~~~~~~~~~~~~~~~~  327 (342)
                      ++|+++....          +.|.+|+++.
T Consensus       322 ~~l~va~~~s----------~~v~v~~~~~  341 (365)
T d1jofa_         322 EWMAITDDQE----------GWLEIYRWKD  341 (365)
T ss_dssp             TEEEEECSSS----------CEEEEEEEET
T ss_pred             CEEEEEeCCC----------CeEEEEEEeC
Confidence            9988875432          2477877653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.75  E-value=1.8e-09  Score=96.81  Aligned_cols=241  Identities=11%  Similarity=-0.034  Sum_probs=132.9

Q ss_pred             EEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc-eeecccCCcceeEEEEeCCC
Q 019384           34 LLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK-EDILGKHDAPVRCIEYSYAA  112 (342)
Q Consensus        34 l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~-~~~~~~h~~~V~~~~~~~~~  112 (342)
                      ++|++.+|.|+|||+.+.+.+..+.        .|++++....+..+.+.+++.  ... ......|-....+..++|||
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~Ip--------Vfspd~~~g~g~~~es~~vl~--~~~~~~~gd~hhP~~s~t~gtpDG   83 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIP--------VFNVDSATGWGITNESKEILG--GDQQYLNGDCHHPHISMTDGRYDG   83 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEEC--------SSSBCTTTCTTTSHHHHHHHC--SSSCCSCCCBCCCEEEEETTEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEE--------eEcCCCCEEEEECCccceEEe--cccccccCcccCCCcceecccCCC
Confidence            6788999999999998877655432        155554333332222222211  111 11123355666677778999


Q ss_pred             CEE-EEeeCCCcEEEEcCCCCCCcceeeeeecCCCCc--EEEEeccCCeE-EEEEcCCeE------------------EE
Q 019384          113 GQV-ITGSWDKSLKCWDPRGASGQERTLVGTYPQPER--VYSLSLVGNRL-VVATAGRHV------------------NV  170 (342)
Q Consensus       113 ~~l-~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~--v~~~s~~~~~~-~~~s~d~~v------------------~i  170 (342)
                      ++| ++...+.+|.++|+++....  ..+. ......  -..++.++++. +++..+..+                  ..
T Consensus        84 r~lfV~d~~~~rVavIDl~t~k~~--~ii~-iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~  160 (441)
T d1qnia2          84 KYLFINDKANTRVARIRLDIMKTD--KITH-IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA  160 (441)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEE--EEEE-CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEe--eEEe-cCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEe
Confidence            887 55567889999999764321  1121 111122  24566666642 333333333                  44


Q ss_pred             EeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEE
Q 019384          171 YDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIA  250 (342)
Q Consensus       171 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~  250 (342)
                      +|..+.+...+.   ........+.++|+|+.+++.+.+..... .++..  .....-.+...          ..-..++
T Consensus       161 iD~~t~~v~~qI---~v~~~p~~v~~spdGk~a~vt~~nse~~~-~id~~--t~~~~d~i~v~----------n~p~~~~  224 (441)
T d1qnia2         161 IDAETMDVAWQV---IVDGNLDNTDADYTGKYATSTCYNSERAV-DLAGT--MRNDRDWVVVF----------NVERIAA  224 (441)
T ss_dssp             EETTTCSEEEEE---EESSCCCCEEECSSSSEEEEEESCTTCCS-SHHHH--TCSSBCEEEEE----------EHHHHHH
T ss_pred             ecCccceeeEEE---ecCCCccceEECCCCCEEEEEecCCCceE-EEecc--CcceEEEEEeC----------CccceEE
Confidence            666654332211   12233456788999998877765432111 11211  11111001100          0112346


Q ss_pred             EcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          251 FHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       251 ~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                      ++|+|+++..++ ++.+.|++....+.++.+..... .+.+++||||+|+.++..
T Consensus       225 ~~~dGk~~~v~~-~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~  277 (441)
T d1qnia2         225 AVKAGNFKTIGD-SKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGK  277 (441)
T ss_dssp             HHHTTCCBCCTT-CCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECT
T ss_pred             EecCCCEEEeCC-CCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCC
Confidence            788999876654 67888888776666666665443 578999999999887754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.64  E-value=1.9e-05  Score=65.35  Aligned_cols=224  Identities=8%  Similarity=-0.056  Sum_probs=117.7

Q ss_pred             CCeEEEEEcCCCCeEEEE-eCCCcEEEEECCCceee-eeeecCCceEEEEEeCCCCeEEEecCCcE-EEEEeccCceeec
Q 019384           20 DGISNLRFSNHSDHLLVS-SWDKSVRLYDASANVLR-GEFMHGGPVLDCCFHDDSSGFSASADHTV-RRLVFSHGKEDIL   96 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~-s~Dgti~vwd~~~~~~~-~~~~h~~~V~~~~~~~~~~~~s~s~D~~i-~~w~~~~~~~~~~   96 (342)
                      .+-+.|+++++|+..++. +..+.+..++....... ....-......+++.+++.++.+...+.+ ++++.........
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            345799999999977665 45567777766543222 11121234567888877777665554443 3322222222211


Q ss_pred             ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEEEcCCeEEEEeCCCC
Q 019384           97 GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNM  176 (342)
Q Consensus        97 ~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~  176 (342)
                      .........+++.++++.+++-.....+..++...... ..........+ .-+.++.+++.+++...++.|..+|....
T Consensus        94 ~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~p-~~i~~~~~g~~~v~~~~~~~i~~~d~~~~  171 (260)
T d1rwia_          94 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDP-DGVAVDNSGNVYVTDTDNNRVVKLEAESN  171 (260)
T ss_dssp             CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC-EECCCCSCCSC-CEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             eeeeeecccccccccceeEeecccccccccccccccee-eeeeecccCCc-ceeeecCCCCEeeeccccccccccccccc
Confidence            22235578899999888777766666677777543211 00000111111 12233333343333333344444443221


Q ss_pred             CCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCC
Q 019384          177 SQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYG  256 (342)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~  256 (342)
                      .                         ..           .+..                     ........|++.++|.
T Consensus       172 ~-------------------------~~-----------~~~~---------------------~~~~~p~gi~~d~~g~  194 (260)
T d1rwia_         172 N-------------------------QV-----------VLPF---------------------TDITAPWGIAVDEAGT  194 (260)
T ss_dssp             C-------------------------EE-----------ECCC---------------------SSCCSEEEEEECTTCC
T ss_pred             e-------------------------ee-----------eeec---------------------cccCCCccceeeeeee
Confidence            0                         00           0000                     0001245788999999


Q ss_pred             eEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEE
Q 019384          257 TFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAV  302 (342)
Q Consensus       257 ~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las  302 (342)
                      ++++....+.|..++..................+|++++||.++++
T Consensus       195 l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~va  240 (260)
T d1rwia_         195 VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVA  240 (260)
T ss_dssp             EEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEE
T ss_pred             eeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEE
Confidence            8888888899998886643322111222345689999999997765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=5.9e-06  Score=68.36  Aligned_cols=205  Identities=12%  Similarity=0.099  Sum_probs=105.9

Q ss_pred             EEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCC---cEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeE
Q 019384           83 VRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDK---SLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRL  159 (342)
Q Consensus        83 i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~---~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~  159 (342)
                      |.+.|.+......+..+...+.+-+|+|||+.||-.+.+.   .+.+.+......   ..+...........++.++..+
T Consensus        21 l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          21 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---RQVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---EEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce---eEEeeeecccccceecCCCCee
Confidence            5555666555555656677788999999999997544333   344555543221   1222222233345566677776


Q ss_pred             EEEEcC-CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEE-EEccCCeEEEEEeechhhhhcccceeeeEEecC
Q 019384          160 VVATAG-RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYA-LSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSE  237 (342)
Q Consensus       160 ~~~s~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~  237 (342)
                      +..... +...++............ ...........+++++..+. ....++...++..+.........   ..     
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~---~~-----  168 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI---TW-----  168 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC---CC-----
T ss_pred             eEeeecCCccceeecccccccceee-eeccccccccccccccccceecccccCCceEeeeecccccceee---ec-----
Confidence            655443 222222221111111111 11111222334555555443 33445555666666543211111   00     


Q ss_pred             CCCceeeeeeEEEEcCCCCeEEEecCC-Ce--EEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          238 AGRDIVYPVNAIAFHPIYGTFATGGCD-GF--VNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       238 ~~~~~~~~v~~v~~sp~~~~l~sgs~D-g~--I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                          .........++|++..++..+.+ +.  |.+.+...+..  .............|||||++||-.+.
T Consensus       169 ----~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         169 ----EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSS  233 (269)
T ss_dssp             ----SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEE
T ss_pred             ----ccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEc
Confidence                01134556899999988765544 34  44445554432  23334556788999999999987664

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.59  E-value=8.3e-05  Score=63.29  Aligned_cols=246  Identities=12%  Similarity=0.090  Sum_probs=128.5

Q ss_pred             CeEEEEEcCCCCeEEEEeC-------CCcEEEEECCCceeeeeee-----cCCceEEEEEeCCC-CeEEEecCCcEEEEE
Q 019384           21 GISNLRFSNHSDHLLVSSW-------DKSVRLYDASANVLRGEFM-----HGGPVLDCCFHDDS-SGFSASADHTVRRLV   87 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~-------Dgti~vwd~~~~~~~~~~~-----h~~~V~~~~~~~~~-~~~s~s~D~~i~~w~   87 (342)
                      +.-.++|+++|++.++...       +|+|..||..++.......     ..+....+.|.+++ .++.+...+.+...+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            3456899999998876432       4678888887764322211     11235678898765 466777666777777


Q ss_pred             eccCceeecccC-C----cceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeEEEE
Q 019384           88 FSHGKEDILGKH-D----APVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVA  162 (342)
Q Consensus        88 ~~~~~~~~~~~h-~----~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~  162 (342)
                      .+......+... .    ...+.+++.++|.+.+|-.. +....|+....         .......+..+..+++.    
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~-~~~~~~~~~~~---------~~~~~G~v~~~~~dg~~----  164 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPA-GEVAPADYTRS---------MQEKFGSIYCFTTDGQM----  164 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECB-CBCTTSCCCBT---------TSSSCEEEEEECTTSCE----
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCc-cCcccccccce---------eccCCceEEEEeecCce----
Confidence            665543332211 1    13567888888776665321 11111211100         00011223333332221    


Q ss_pred             EcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCc----eEEE-EccCCeEEEEEeechhhhhcccceeeeEEecC
Q 019384          163 TAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGT----GYAL-SSVEGRVAMEFFDLSEASQAKKYAFKCHRKSE  237 (342)
Q Consensus       163 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~-~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~  237 (342)
                            ....-            .+ ...+.+++.|++.    .+.+ .+..+.+  +.||+................  
T Consensus       165 ------~~~~~------------~~-~~pNGi~~~~d~d~~~~~lyv~d~~~~~i--~~~d~~~~g~~~~~~~~~~~~--  221 (314)
T d1pjxa_         165 ------IQVDT------------AF-QFPNGIAVRHMNDGRPYQLIVAETPTKKL--WSYDIKGPAKIENKKVWGHIP--  221 (314)
T ss_dssp             ------EEEEE------------EE-SSEEEEEEEECTTSCEEEEEEEETTTTEE--EEEEEEETTEEEEEEEEEECC--
T ss_pred             ------eEeeC------------Cc-ceeeeeEECCCCCcceeEEEEEeecccce--EEeeccCccccceeeEEEEcc--
Confidence                  11110            00 0134566666543    2333 3444433  445543221111000000000  


Q ss_pred             CCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEECCCCCEEEEEEe
Q 019384          238 AGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       238 ~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~spdg~~las~s~  305 (342)
                       +.. ......+++.++|+.+++....+.|.+||.+.++.+..+........+++|.||++.|-+.++
T Consensus       222 -~~~-~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~  287 (314)
T d1pjxa_         222 -GTH-EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             -CCS-SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             -ccc-cccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEEC
Confidence             000 012356899999998888777889999998877665555544467899999999985544443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.55  E-value=0.00013  Score=60.75  Aligned_cols=239  Identities=10%  Similarity=0.030  Sum_probs=133.1

Q ss_pred             CCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecC-------CceEEEEEeCCC-CeEEE--ecCCcEEEEEec
Q 019384           20 DGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHG-------GPVLDCCFHDDS-SGFSA--SADHTVRRLVFS   89 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~-------~~V~~~~~~~~~-~~~s~--s~D~~i~~w~~~   89 (342)
                      ..-..|+++++++.+++-...+.|++||.+.. ....+...       .....+++.++. ..+.+  +.++.+..++..
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCCCC-EEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            45689999999999888788899999997643 33333211       123455655433 23322  233445444433


Q ss_pred             cCceeec-ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEec--cCCeEEEEEcCC
Q 019384           90 HGKEDIL-GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGR  166 (342)
Q Consensus        90 ~~~~~~~-~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~--~~~~~~~~s~d~  166 (342)
                      ......+ .........+++.+++..+++....+.+.+++...   .....+...........+..  +++.+++....+
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g---~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~  178 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG---NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH  178 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS---CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC---ceeecccccccccccceeeeccceeEEeeecccc
Confidence            2222222 23445677899998888888777777888888542   11122222222223333443  444555566667


Q ss_pred             eEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeee
Q 019384          167 HVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPV  246 (342)
Q Consensus       167 ~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v  246 (342)
                      .|.+||.... ...+.-....-.....+++.++|+.+++...++. .+.+|+.. ....  ..+.....       ....
T Consensus       179 ~V~~~d~~G~-~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~-~v~~f~~~-G~~~--~~~~~~~~-------~~~p  246 (279)
T d1q7fa_         179 CVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNF-NLTIFTQD-GQLI--SALESKVK-------HAQC  246 (279)
T ss_dssp             EEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSC-EEEEECTT-SCEE--EEEEESSC-------CSCE
T ss_pred             ceeeeecCCc-eeeeecccccccCCcccccccCCeEEEEECCCCc-EEEEECCC-CCEE--EEEeCCCC-------CCCE
Confidence            8999997542 1111101111123577889999986655444332 34567642 1111  11111000       0124


Q ss_pred             eEEEEcCCCCeEEEecCCCeEEEEeCCCc
Q 019384          247 NAIAFHPIYGTFATGGCDGFVNVWDGNNK  275 (342)
Q Consensus       247 ~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~  275 (342)
                      ..|++.|+|..+++ ..++.|++|..+..
T Consensus       247 ~~vav~~dG~l~V~-~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         247 FDVALMDDGSVVLA-SKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             eEEEEeCCCcEEEE-eCCCeEEEEEeeee
Confidence            67899999876555 46899999987754

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.42  E-value=0.00016  Score=62.84  Aligned_cols=251  Identities=14%  Similarity=0.100  Sum_probs=126.0

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCC-ceeeeeee--cCCceEEEEEeCCCCe--EEEec--CCcEEEEEeccC
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASA-NVLRGEFM--HGGPVLDCCFHDDSSG--FSASA--DHTVRRLVFSHG   91 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~-~~~~~~~~--h~~~V~~~~~~~~~~~--~s~s~--D~~i~~w~~~~~   91 (342)
                      ...+..|+|++++++|.++.. +.+..|.+.. +.+.....  ..+....+.++++++.  ++...  .+.+..+.+...
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence            445667999999999987755 4677777643 23322221  2233344555555542  22211  233333222110


Q ss_pred             -------------ce-e----ecccCCcceeEEEEeCCCCEEEEeeC-CCcEEEEcCCCCCCcc-eeeeeecC--CCCcE
Q 019384           92 -------------KE-D----ILGKHDAPVRCIEYSYAAGQVITGSW-DKSLKCWDPRGASGQE-RTLVGTYP--QPERV  149 (342)
Q Consensus        92 -------------~~-~----~~~~h~~~V~~~~~~~~~~~l~sgs~-D~~I~iWd~~~~~~~~-~~~~~~~~--~~~~v  149 (342)
                                   .. .    .-.+....+.+++|+|++++++.+.. ...|.+|+........ ........  ...+-
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~  197 (365)
T d1jofa_         118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEE
Confidence                         00 0    01122234789999999998876643 4578888754322111 01111111  11223


Q ss_pred             EEEeccCCeEE-EEEcCCeEEEEeCCCCCCcccccc-----------------cccceeeEEEEEeeCCceEEEEccC--
Q 019384          150 YSLSLVGNRLV-VATAGRHVNVYDLRNMSQPEQRRE-----------------SSLKYQTRCVRCYPNGTGYALSSVE--  209 (342)
Q Consensus       150 ~~~s~~~~~~~-~~s~d~~v~iwd~~~~~~~~~~~~-----------------~~~~~~~~~v~~~~~~~~~~~~s~~--  209 (342)
                      ..++.+++.+. +.-.+++|.+||+...........                 .........+.++|+|+.++++.-.  
T Consensus       198 i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~  277 (365)
T d1jofa_         198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             EEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCC
Confidence            45555666554 445568899999865432110000                 0011223467789999988776321  


Q ss_pred             --CeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcC-CCCeEEE-ecCCCeEEEEeCCCc
Q 019384          210 --GRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHP-IYGTFAT-GGCDGFVNVWDGNNK  275 (342)
Q Consensus       210 --~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp-~~~~l~s-gs~Dg~I~iWd~~~~  275 (342)
                        ....+..|+.......... ...+.....+    .....++++| +|++|+. ...+++|.+|+++..
T Consensus       278 ~~~~~~i~~~~~~~~g~~~~~-~~~~~~~~~G----~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         278 FELQGYIAGFKLRDCGSIEKQ-LFLSPTPTSG----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTSCCEEEEEEECTTSCEEEE-EEEEECSSCC----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CccceEEEEEEecCCCceeeE-eEeeEEEcCC----CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence              1222334554332111111 0111110011    1245689998 7887655 467889999987654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.37  E-value=0.00051  Score=58.29  Aligned_cols=231  Identities=8%  Similarity=-0.020  Sum_probs=122.7

Q ss_pred             eEEEEEeCCCCeE-EEecCCcEEEEEeccCce-eecccCCcceeEEEEeCCCCEEEEeeCC----CcEEEEcCCCCCCcc
Q 019384           63 VLDCCFHDDSSGF-SASADHTVRRLVFSHGKE-DILGKHDAPVRCIEYSYAAGQVITGSWD----KSLKCWDPRGASGQE  136 (342)
Q Consensus        63 V~~~~~~~~~~~~-s~s~D~~i~~w~~~~~~~-~~~~~h~~~V~~~~~~~~~~~l~sgs~D----~~I~iWd~~~~~~~~  136 (342)
                      ...++|.+++.++ +-...+.|..|+.+++.. ..+.........+++.++|.++++...+    +.|...+......  
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~--  119 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL--  119 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC--
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee--
Confidence            3577887666665 444677787777766543 2333444567899999999877765433    2344444432211  


Q ss_pred             eeeeeecCCCCcEEE--EeccCCeEEEEEcC-------CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEE-
Q 019384          137 RTLVGTYPQPERVYS--LSLVGNRLVVATAG-------RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS-  206 (342)
Q Consensus       137 ~~~~~~~~~~~~v~~--~s~~~~~~~~~s~d-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-  206 (342)
                      ...............  +..+++..+ +...       +.+..++.....  .......+ ...+.++++|+++.++++ 
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~v-td~~~~~~~~~g~v~~~~~dg~~--~~~~~~~~-~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYF-TDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNI-SVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEE-EECCCBTTBCCEEEEEECTTSCC--EEEEEEEE-SSEEEEEECTTSSEEEEEE
T ss_pred             eeeccCCCcccCCcceeEEeccceee-cccccccccCcceeEEEecccce--eEEEeecc-ceeeeeeeccccceEEEec
Confidence            111111111122222  344454333 3222       123333332211  11111111 124678899999866554 


Q ss_pred             ccCCeEEEEEeechhhhhccc-ceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccC---
Q 019384          207 SVEGRVAMEFFDLSEASQAKK-YAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYS---  282 (342)
Q Consensus       207 s~~~~~~i~~~d~~~~~~~~~-~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~---  282 (342)
                      +..+.+  +.|++........ .......... +   ......+++.++|+.+++....+.|.+||.+ ++.+..+.   
T Consensus       196 ~~~~~I--~~~d~~~~g~~~~~~~~~~~~~~~-~---~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~-G~~l~~i~~P~  268 (319)
T d2dg1a1         196 TTANRL--HRIALEDDGVTIQPFGATIPYYFT-G---HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPG  268 (319)
T ss_dssp             GGGTEE--EEEEECTTSSSEEEEEEEEEEECC-S---SSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTT
T ss_pred             ccCCce--EEEEEcCCCceeccccceeeeccC-C---ccceeeeeEcCCCCEEEEEcCCCEEEEECCC-CcEEEEEeCCC
Confidence            455544  5566643211110 0000010000 0   0123568999999988888889999999964 66554432   


Q ss_pred             ---CCCcceEEEEECCCCCEEEEEEec
Q 019384          283 ---KYPTSIAALSFSRDGRLLAVASSY  306 (342)
Q Consensus       283 ---~~~~~V~~v~~spdg~~las~s~~  306 (342)
                         ++...+.+++|.|++..|.+.+.+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         269 RDEGHMLRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             GGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             cCCCcCceeeeEEEeCCCCEEEEEcCC
Confidence               445578899999999877776654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=0.00026  Score=63.60  Aligned_cols=108  Identities=6%  Similarity=-0.070  Sum_probs=68.3

Q ss_pred             CCeEEEEEcCCCCeEEEE---------eCCCcEEEEECCCceeeeee---ecCCceEEEEEeCCCCeEEEecCCcEEEEE
Q 019384           20 DGISNLRFSNHSDHLLVS---------SWDKSVRLYDASANVLRGEF---MHGGPVLDCCFHDDSSGFSASADHTVRRLV   87 (342)
Q Consensus        20 ~~V~~l~fs~~~~~l~s~---------s~Dgti~vwd~~~~~~~~~~---~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~   87 (342)
                      -.+....||||+++++.+         +..+.+.|+|+.++......   ...+.+....|+|++..++-..++.+.+.+
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~  140 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCA  140 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEES
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEecceEEEEe
Confidence            367788999999988765         34578889999877544332   223445568899888876656677776666


Q ss_pred             eccCcee-e-cccCCcc-----------------eeEEEEeCCCCEEEEeeCC-CcEEEE
Q 019384           88 FSHGKED-I-LGKHDAP-----------------VRCIEYSYAAGQVITGSWD-KSLKCW  127 (342)
Q Consensus        88 ~~~~~~~-~-~~~h~~~-----------------V~~~~~~~~~~~l~sgs~D-~~I~iW  127 (342)
                      ...+... . ..+-...                 -..+-|+|||+.||....| ..+..+
T Consensus       141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~  200 (465)
T d1xfda1         141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIM  200 (465)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEE
T ss_pred             cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEeccccccee
Confidence            5554422 1 1111111                 1467799999999876544 334444

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.17  E-value=0.0014  Score=55.44  Aligned_cols=231  Identities=11%  Similarity=0.055  Sum_probs=126.3

Q ss_pred             CeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCCceEEEEEeCCCCeEEEecC---CcEEEEEe--ccCcee
Q 019384           21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGGPVLDCCFHDDSSGFSASAD---HTVRRLVF--SHGKED   94 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~~V~~~~~~~~~~~~s~s~D---~~i~~w~~--~~~~~~   94 (342)
                      ....++|+++|++.++-...++|..|+..++..... .........+++.+++.++.+...   ....++.+  ......
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            446789999999888888889999999877654433 334566789999988888766432   23334433  333322


Q ss_pred             ecccC---CcceeEEEEeCCCCEEEEeeCC------CcEEEEcCCCCCCcceeeeeecCCCCcEEEEeccCCeE-EEEEc
Q 019384           95 ILGKH---DAPVRCIEYSYAAGQVITGSWD------KSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRL-VVATA  164 (342)
Q Consensus        95 ~~~~h---~~~V~~~~~~~~~~~l~sgs~D------~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~~~~~-~~~s~  164 (342)
                      .+..+   ....+.+++.++|.+.++....      +.+..++....  ...........+ .-+.++.+++.+ ++-+.
T Consensus       121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~--~~~~~~~~~~~p-nGia~s~dg~~lyvad~~  197 (319)
T d2dg1a1         121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR--TVTPIIQNISVA-NGIALSTDEKVLWVTETT  197 (319)
T ss_dssp             EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC--CEEEEEEEESSE-EEEEECTTSSEEEEEEGG
T ss_pred             eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc--eeEEEeecccee-eeeeeccccceEEEeccc
Confidence            22222   2346778999999766653221      23555554321  111112222111 123455566655 44466


Q ss_pred             CCeEEEEeCCCCCCcccccc------cccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEecCC
Q 019384          165 GRHVNVYDLRNMSQPEQRRE------SSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEA  238 (342)
Q Consensus       165 d~~v~iwd~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~  238 (342)
                      .+.|..||+...........      .........+++.++|+.+++....+.+  ..||.. ........+....    
T Consensus       198 ~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V--~~~~p~-G~~l~~i~~P~~~----  270 (319)
T d2dg1a1         198 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRV--LVFNKR-GYPIGQILIPGRD----  270 (319)
T ss_dssp             GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEE--EEECTT-SCEEEEEECTTGG----
T ss_pred             CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEE--EEECCC-CcEEEEEeCCCcC----
Confidence            78899999864322111000      0001124567788888866666666655  457752 2222222221100    


Q ss_pred             CCceeeeeeEEEEcCCCCeEEEec
Q 019384          239 GRDIVYPVNAIAFHPIYGTFATGG  262 (342)
Q Consensus       239 ~~~~~~~v~~v~~sp~~~~l~sgs  262 (342)
                       ......+.+++|.|++..+++..
T Consensus       271 -~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         271 -EGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             -GTCSCBCCEEEECTTSCEEEEEE
T ss_pred             -CCcCceeeeEEEeCCCCEEEEEc
Confidence             01112467899999877665543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.12  E-value=0.0011  Score=54.92  Aligned_cols=236  Identities=9%  Similarity=0.036  Sum_probs=122.7

Q ss_pred             eEEEEEeCCCCeEEE-ecCCcEEEEEeccCceeecc------cCCcceeEEEEeCCCC-EEE-EeeCCCcEEEEcCCCCC
Q 019384           63 VLDCCFHDDSSGFSA-SADHTVRRLVFSHGKEDILG------KHDAPVRCIEYSYAAG-QVI-TGSWDKSLKCWDPRGAS  133 (342)
Q Consensus        63 V~~~~~~~~~~~~s~-s~D~~i~~w~~~~~~~~~~~------~h~~~V~~~~~~~~~~-~l~-sgs~D~~I~iWd~~~~~  133 (342)
                      ...+++.+++.++.+ ...+.|++|+.+..-...+.      +....-..+++.++.. .++ ..+.++.|.+++...  
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g--  102 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG--  102 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS--
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc--
Confidence            567788776666544 45566777765432222111      1111234456555543 333 344556788887542  


Q ss_pred             CcceeeeeecCCCCcE--EEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCe
Q 019384          134 GQERTLVGTYPQPERV--YSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGR  211 (342)
Q Consensus       134 ~~~~~~~~~~~~~~~v--~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~  211 (342)
                       .....+. .......  ..+..+++.+++....+.+.+++.... ................+++.+++..+++....+.
T Consensus       103 -~~~~~~~-~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~  179 (279)
T d1q7fa_         103 -QFVRKFG-ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  179 (279)
T ss_dssp             -CEEEEEC-TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             -cceeecC-CCcccccceeccccCCcEEEEeeccceeeEeccCCc-eeecccccccccccceeeeccceeEEeeeccccc
Confidence             1111111 1111222  234444444444444556777765321 1111001111123556777888876666666665


Q ss_pred             EEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecC-CCeEEEEeCCCceeeeccC--CCCcce
Q 019384          212 VAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGC-DGFVNVWDGNNKKRLYQYS--KYPTSI  288 (342)
Q Consensus       212 ~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~-Dg~I~iWd~~~~~~~~~~~--~~~~~V  288 (342)
                      +  +.||.... .  ...+. .      .........|++.|+|+.+++-.. ++.|.+|+.+ ++.+..+.  ......
T Consensus       180 V--~~~d~~G~-~--~~~~g-~------~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p  246 (279)
T d1q7fa_         180 V--KVFNYEGQ-Y--LRQIG-G------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQC  246 (279)
T ss_dssp             E--EEEETTCC-E--EEEES-C------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCE
T ss_pred             e--eeeecCCc-e--eeeec-c------cccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEEEEeCCCCCCCE
Confidence            4  45775321 1  11110 0      011112467899999998777544 5579999854 55554442  233467


Q ss_pred             EEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEEEccCC
Q 019384          289 AALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVRSVNEI  328 (342)
Q Consensus       289 ~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~~~~~~  328 (342)
                      +.|++.|||++++ ++.+.           .|.+|+..++
T Consensus       247 ~~vav~~dG~l~V-~~~n~-----------~v~~fr~~~~  274 (279)
T d1q7fa_         247 FDVALMDDGSVVL-ASKDY-----------RLYIYRYVQL  274 (279)
T ss_dssp             EEEEEETTTEEEE-EETTT-----------EEEEEECSCC
T ss_pred             eEEEEeCCCcEEE-EeCCC-----------eEEEEEeeee
Confidence            9999999998665 43333           5888877554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.06  E-value=0.00031  Score=59.03  Aligned_cols=189  Identities=8%  Similarity=-0.036  Sum_probs=108.5

Q ss_pred             CCCCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCc--eeee--eeecCCceEEEEEeCCCCeE-EEecCCcEEEEEeccC
Q 019384           17 PPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASAN--VLRG--EFMHGGPVLDCCFHDDSSGF-SASADHTVRRLVFSHG   91 (342)
Q Consensus        17 ~~~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~--~~~~--~~~h~~~V~~~~~~~~~~~~-s~s~D~~i~~w~~~~~   91 (342)
                      .....+..++|++||+++++...++.+.+|+....  ....  ..........+.+.+++.++ +.+.++.+..++...+
T Consensus        65 ~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~  144 (302)
T d2p4oa1          65 TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  144 (302)
T ss_dssp             ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             cCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCC
Confidence            44568899999999999999888899988886432  2222  22234567888888777765 4456666766666554


Q ss_pred             ceeec-----------ccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcce-eeeeecCCCCcEEEEeccCCeE
Q 019384           92 KEDIL-----------GKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQER-TLVGTYPQPERVYSLSLVGNRL  159 (342)
Q Consensus        92 ~~~~~-----------~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~-~~~~~~~~~~~v~~~s~~~~~~  159 (342)
                      .....           .........+.+.. +..+++.+..+.|..++......... ...... ....-+.++.+++..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~pdgia~d~dG~l~  222 (302)
T d2p4oa1         145 SGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLY  222 (302)
T ss_dssp             EEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEE
T ss_pred             cceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCC-CCCcceEECCCCCEE
Confidence            42211           11123355666653 34556777888888888754321111 111111 112234566677766


Q ss_pred             EEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEE---eeCCceEEEEcc
Q 019384          160 VVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRC---YPNGTGYALSSV  208 (342)
Q Consensus       160 ~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~~s~  208 (342)
                      ++...+++|..++............... ...++++|   .+|++.+++++.
T Consensus       223 va~~~~~~V~~i~p~G~~~~~~~~~~~~-~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         223 GATHIYNSVVRIAPDRSTTIIAQAEQGV-IGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             EECBTTCCEEEECTTCCEEEEECGGGTC-TTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EEEcCCCcEEEECCCCCEEEEEecCCCC-CCceEEEEcCCCCCCCEEEEECC
Confidence            6666788888887653211111111111 13567777   456666655543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.04  E-value=0.0006  Score=55.89  Aligned_cols=192  Identities=10%  Similarity=0.030  Sum_probs=110.0

Q ss_pred             CeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEec-CCcEEEEEeccCceeec-cc
Q 019384           21 GISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASA-DHTVRRLVFSHGKEDIL-GK   98 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~-D~~i~~w~~~~~~~~~~-~~   98 (342)
                      ....|++++++++.++....+.+++++..+..............++++.+++.++.+.. ...+..++......... ..
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~  137 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT  137 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeec
Confidence            45678999999988888777888877655544332222334567888877777665433 33344444333322221 12


Q ss_pred             CCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEe--ccCCeEEEEEcCCeEEEEeCCCC
Q 019384           99 HDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLS--LVGNRLVVATAGRHVNVYDLRNM  176 (342)
Q Consensus        99 h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s--~~~~~~~~~s~d~~v~iwd~~~~  176 (342)
                      -......+++.++++.+++...++.|..+|.+....   ..+. .........++  .+++.+++....+.|..++....
T Consensus       138 ~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~---~~~~-~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         138 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ---VVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE---EECC-CSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             ccCCcceeeecCCCCEeeecccccccccccccccee---eeee-ccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            224457899999998888888888999999764221   1111 11112233444  44555565666677887876543


Q ss_pred             CCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeech
Q 019384          177 SQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLS  220 (342)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~  220 (342)
                      ... ......+ .....+++.++|..+++...++++  +.++..
T Consensus       214 ~~~-~~~~~~~-~~P~~i~~d~~g~l~vad~~~~rI--~~i~~~  253 (260)
T d1rwia_         214 TST-VLPFTGL-NTPLAVAVDSDRTVYVADRGNDRV--VKLTSL  253 (260)
T ss_dssp             CCE-ECCCCSC-CCEEEEEECTTCCEEEEEGGGTEE--EEECCC
T ss_pred             eEE-EEccCCC-CCeEEEEEeCCCCEEEEECCCCEE--EEEeCC
Confidence            211 1111111 235678888888765555555543  335543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=7.9e-05  Score=67.11  Aligned_cols=225  Identities=12%  Similarity=0.055  Sum_probs=118.8

Q ss_pred             EEeCCCCeEEEecCCcEEEEEeccCceeec-cc---CCcceeEEEEeCCCCEEEEe---------eCCCcEEEEcCCCCC
Q 019384           67 CFHDDSSGFSASADHTVRRLVFSHGKEDIL-GK---HDAPVRCIEYSYAAGQVITG---------SWDKSLKCWDPRGAS  133 (342)
Q Consensus        67 ~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~-~~---h~~~V~~~~~~~~~~~l~sg---------s~D~~I~iWd~~~~~  133 (342)
                      .|.+++..+.-..++.+.+|+..++....+ ..   ..-.+....|+||++.++-.         +..+.+.++|+.++.
T Consensus        23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            465555555445677888999887775433 22   22356678899999987654         335678888987654


Q ss_pred             CcceeeeeecC---CCCcEEEEeccCCeEEEEEcCCeEEEEeCCCCCCcccccccc----------------cceeeEEE
Q 019384          134 GQERTLVGTYP---QPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESS----------------LKYQTRCV  194 (342)
Q Consensus       134 ~~~~~~~~~~~---~~~~v~~~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~----------------~~~~~~~v  194 (342)
                      ..   .+....   .......++++++.++... ++.|.+.+...+..........                +...-..+
T Consensus       103 ~~---~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~  178 (465)
T d1xfda1         103 PQ---SLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH  178 (465)
T ss_dssp             CE---ECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             ee---eccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence            32   121111   1112245788888877665 5677777776543211111000                00112356


Q ss_pred             EEeeCCceEEEEccCCe-EE-------------------------------EEEeechhhhhcccceeeeEEecCCCCce
Q 019384          195 RCYPNGTGYALSSVEGR-VA-------------------------------MEFFDLSEASQAKKYAFKCHRKSEAGRDI  242 (342)
Q Consensus       195 ~~~~~~~~~~~~s~~~~-~~-------------------------------i~~~d~~~~~~~~~~~~~~h~~~~~~~~~  242 (342)
                      -|+|||+.++....|.+ +.                               +.++|+......  ....  .. ......
T Consensus       179 ~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~--~~~~--~~-~~~~~~  253 (465)
T d1xfda1         179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD--LEMM--PP-DDPRMR  253 (465)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC--EECC--CC-CCGGGS
T ss_pred             EECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEE--EEEe--cc-CcCccc
Confidence            68999999887653321 11                               122222110000  0000  00 000000


Q ss_pred             eeeeeEEEEcCCCCeEEEecC----CCeEEEEeCCCceeeeccCC-CCcce----EEEEECCCCCEE
Q 019384          243 VYPVNAIAFHPIYGTFATGGC----DGFVNVWDGNNKKRLYQYSK-YPTSI----AALSFSRDGRLL  300 (342)
Q Consensus       243 ~~~v~~v~~sp~~~~l~sgs~----Dg~I~iWd~~~~~~~~~~~~-~~~~V----~~v~~spdg~~l  300 (342)
                      .+=+..+.|+|+++.++....    ...|.++|..++++...+.. ....|    ....|+|||+.+
T Consensus       254 ~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred             cceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence            112567889999886665432    23688889988765433221 12222    356899999954

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.86  E-value=0.00099  Score=54.42  Aligned_cols=92  Identities=9%  Similarity=0.052  Sum_probs=60.8

Q ss_pred             EEcCC--CCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeE--EEecCC-----cEEEEEeccCceeec
Q 019384           26 RFSNH--SDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGF--SASADH-----TVRRLVFSHGKEDIL   96 (342)
Q Consensus        26 ~fs~~--~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~--s~s~D~-----~i~~w~~~~~~~~~~   96 (342)
                      ..|||  |+++|=.+ +|.|.+.|+.+++.+.+..+.+.+....|+||++.+  +...++     .+.+++...+....+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            45788  99887543 456888899988777666677888999999988754  222222     244455555554433


Q ss_pred             cc-------CCcceeEEEEeCCCCEEEEe
Q 019384           97 GK-------HDAPVRCIEYSYAAGQVITG  118 (342)
Q Consensus        97 ~~-------h~~~V~~~~~~~~~~~l~sg  118 (342)
                      ..       ........+|+|+++.|+..
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             eecCCCccCccccccccccCCCCCEEEEE
Confidence            22       22345678899999988754

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.86  E-value=0.0052  Score=51.14  Aligned_cols=209  Identities=14%  Similarity=0.114  Sum_probs=110.1

Q ss_pred             cCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCCcEEEEcCCCCCCcceeeeeecCC---CCcEEEEec-
Q 019384           79 ADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQ---PERVYSLSL-  154 (342)
Q Consensus        79 ~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~~I~iWd~~~~~~~~~~~~~~~~~---~~~v~~~s~-  154 (342)
                      ..+.|..|+..++....+. ....+.++++.+++.++++ +. ..|.++|..++..   ..+.....   ......+.. 
T Consensus        38 ~~~~I~r~d~~~g~~~~~~-~~~~~~~i~~~~dg~l~va-~~-~gl~~~d~~tg~~---~~l~~~~~~~~~~~~nd~~vd  111 (295)
T d2ghsa1          38 LERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIA-SD-DGLFLRDTATGVL---TLHAELESDLPGNRSNDGRMH  111 (295)
T ss_dssp             GGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCE---EEEECSSTTCTTEEEEEEEEC
T ss_pred             CCCEEEEEECCCCeEEEEE-CCCCcEEEEEecCCCEEEE-Ee-CccEEeeccccee---eEEeeeecCCCcccceeeEEC
Confidence            4456777777766544332 2346788999888766654 44 4688999875432   12211111   112333333 


Q ss_pred             -cCCeEEEEEcC-----CeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhc--
Q 019384          155 -VGNRLVVATAG-----RHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQA--  225 (342)
Q Consensus       155 -~~~~~~~~s~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~--  225 (342)
                       +++. ..++.+     +.-.+|.+..++..  .....+ ...+.++++++++.++.. +..+.+  +.|+.......  
T Consensus       112 ~~G~i-w~~~~~~~~~~~~g~l~~~~~g~~~--~~~~~~-~~~Ng~~~s~d~~~l~~~dt~~~~I--~~~~~d~~~~~~~  185 (295)
T d2ghsa1         112 PSGAL-WIGTMGRKAETGAGSIYHVAKGKVT--KLFADI-SIPNSICFSPDGTTGYFVDTKVNRL--MRVPLDARTGLPT  185 (295)
T ss_dssp             TTSCE-EEEEEETTCCTTCEEEEEEETTEEE--EEEEEE-SSEEEEEECTTSCEEEEEETTTCEE--EEEEBCTTTCCBS
T ss_pred             CCCCE-EEEeccccccccceeEeeecCCcEE--EEeecc-CCcceeeecCCCceEEEeeccccee--eEeeecccccccc
Confidence             3443 333321     23345555443211  111111 124678889998866554 445544  44554221111  


Q ss_pred             ccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCceeeeccCCCCcceEEEEE-CCCCCEEEEEE
Q 019384          226 KKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPTSIAALSF-SRDGRLLAVAS  304 (342)
Q Consensus       226 ~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~V~~v~~-spdg~~las~s  304 (342)
                      ..........     ...+....+++..+|+..++.-..+.|..||.+ ++.+..+.--...+++++| -||.+.|-+.+
T Consensus       186 ~~~~~~~~~~-----~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         186 GKAEVFIDST-----GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             SCCEEEEECT-----TSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             cceEEEeccC-----cccccccceEEcCCCCEEeeeeCCCceEEecCC-CcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence            1110000000     111235678899999876666667899999965 6666655433457899999 58887555544


Q ss_pred             e
Q 019384          305 S  305 (342)
Q Consensus       305 ~  305 (342)
                      .
T Consensus       260 a  260 (295)
T d2ghsa1         260 A  260 (295)
T ss_dssp             B
T ss_pred             C
Confidence            3

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.82  E-value=0.004  Score=52.42  Aligned_cols=194  Identities=12%  Similarity=0.099  Sum_probs=107.3

Q ss_pred             eEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeee-eecCC----ceEEEEEeCCCCeEEEecCC--------------c
Q 019384           22 ISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGE-FMHGG----PVLDCCFHDDSSGFSASADH--------------T   82 (342)
Q Consensus        22 V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~-~~h~~----~V~~~~~~~~~~~~s~s~D~--------------~   82 (342)
                      -..++|++++++|+.+...+.+...|..+...... ....+    ..+++.+.+++.++.+...+              .
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            45699999999888888778888889876542221 11111    25678888777765432211              1


Q ss_pred             EEEEEecc-CceeecccCCcceeEEEEeCCCC-----EEEEeeCCCcEEEEcCCCCCCc-ceeeeeecCCC--Cc--EEE
Q 019384           83 VRRLVFSH-GKEDILGKHDAPVRCIEYSYAAG-----QVITGSWDKSLKCWDPRGASGQ-ERTLVGTYPQP--ER--VYS  151 (342)
Q Consensus        83 i~~w~~~~-~~~~~~~~h~~~V~~~~~~~~~~-----~l~sgs~D~~I~iWd~~~~~~~-~~~~~~~~~~~--~~--v~~  151 (342)
                      -++|.+.. ++...+......-+.++|+++++     +.++-+..+.|..||+...... ....+......  ..  -++
T Consensus       153 G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGia  232 (314)
T d1pjxa_         153 GSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD  232 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred             ceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeE
Confidence            23444332 22222222223346789998764     4455577788888886532111 01111111111  11  234


Q ss_pred             EeccCCeEEEEEcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEE-EEccCCeEEEEEeec
Q 019384          152 LSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYA-LSSVEGRVAMEFFDL  219 (342)
Q Consensus       152 ~s~~~~~~~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~s~~~~~~i~~~d~  219 (342)
                      ++.+++..++....+.|..||......... ...+ ....++++|.|+++.+. +.+.++.+  +.++.
T Consensus       233 vD~~GnlyVa~~~~g~I~~~dp~~g~~~~~-i~~p-~~~~t~~afg~d~~~lyVt~~~~g~i--~~~~~  297 (314)
T d1pjxa_         233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMR-IRCP-FEKPSNLHFKPQTKTIFVTEHENNAV--WKFEW  297 (314)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTCBSCSEE-EECS-SSCEEEEEECTTSSEEEEEETTTTEE--EEEEC
T ss_pred             EecCCcEEEEEcCCCEEEEEeCCCCEEEEE-EECC-CCCEEEEEEeCCCCEEEEEECCCCcE--EEEEC
Confidence            555666666666778999999876532211 1111 13467888999887554 44555654  34554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.42  E-value=0.0055  Score=49.67  Aligned_cols=46  Identities=2%  Similarity=-0.043  Sum_probs=35.1

Q ss_pred             CCeEEEecCCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEE
Q 019384           72 SSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVIT  117 (342)
Q Consensus        72 ~~~~s~s~D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s  117 (342)
                      +..+.-..++.|.+.++..++...+..+...+...+|+|||+.|+-
T Consensus        12 G~~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf   57 (281)
T d1k32a2          12 GDRIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAI   57 (281)
T ss_dssp             TTEEEEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEE
T ss_pred             CCEEEEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEE
Confidence            5544444566777778888887777777778899999999998874

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.08  E-value=0.056  Score=44.52  Aligned_cols=183  Identities=16%  Similarity=0.047  Sum_probs=102.4

Q ss_pred             CCCeEEEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeec-----CCceEEEEEeCCCCeEEEecC-----CcEEEEEe
Q 019384           19 SDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMH-----GGPVLDCCFHDDSSGFSASAD-----HTVRRLVF   88 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h-----~~~V~~~~~~~~~~~~s~s~D-----~~i~~w~~   88 (342)
                      ...+.++++.++++++++ +.+ -+.++|..+++.......     ...++++.+.+++.+..++.+     +.-.+|.+
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence            457889999999877764 455 488899988765443221     124678888888877655432     23456666


Q ss_pred             ccCceeecccCCcceeEEEEeCCCCEE-EEeeCCCcEEEEcCCCCCCc---ceeeeeec-CCCCcEEE--EeccCCeEEE
Q 019384           89 SHGKEDILGKHDAPVRCIEYSYAAGQV-ITGSWDKSLKCWDPRGASGQ---ERTLVGTY-PQPERVYS--LSLVGNRLVV  161 (342)
Q Consensus        89 ~~~~~~~~~~h~~~V~~~~~~~~~~~l-~sgs~D~~I~iWd~~~~~~~---~~~~~~~~-~~~~~v~~--~s~~~~~~~~  161 (342)
                      ..++...+...-..-+.++|+++++.+ ++-+..+.|..+++......   ....+... ........  ++.+++..++
T Consensus       136 ~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva  215 (295)
T d2ghsa1         136 AKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA  215 (295)
T ss_dssp             ETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE
T ss_pred             cCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEee
Confidence            555533322222345788999998765 56677788888876432211   01111111 11222333  4445555555


Q ss_pred             EEcCCeEEEEeCCCCCCcccccccccceeeEEEEEe-eCCceEEEE
Q 019384          162 ATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCY-PNGTGYALS  206 (342)
Q Consensus       162 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~  206 (342)
                      .-.++.|..||-. ++.. .....+. .++++++|- ++.+.+.+.
T Consensus       216 ~~~~g~V~~~dp~-G~~~-~~i~lP~-~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         216 RWGEGAVDRYDTD-GNHI-ARYEVPG-KQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             EETTTEEEEECTT-CCEE-EEEECSC-SBEEEEEEESTTSCEEEEE
T ss_pred             eeCCCceEEecCC-CcEe-eEecCCC-CceEEEEEeCCCCCEEEEE
Confidence            5567789999964 3222 2211111 245666654 555554443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.68  E-value=0.14  Score=43.13  Aligned_cols=114  Identities=11%  Similarity=-0.021  Sum_probs=68.8

Q ss_pred             CCCCeEEEEEcCCCCeEEEEeCCC-----------cEEEEECCCceeeee----eecCCceEEEEEeCCCCeEEEe-cC-
Q 019384           18 PSDGISNLRFSNHSDHLLVSSWDK-----------SVRLYDASANVLRGE----FMHGGPVLDCCFHDDSSGFSAS-AD-   80 (342)
Q Consensus        18 ~~~~V~~l~fs~~~~~l~s~s~Dg-----------ti~vwd~~~~~~~~~----~~h~~~V~~~~~~~~~~~~s~s-~D-   80 (342)
                      +...+....-..+|+.++-|+.+.           .+.+||..++.....    ..|.....++++..++.++.++ .+ 
T Consensus        18 p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~   97 (387)
T d1k3ia3          18 PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA   97 (387)
T ss_dssp             SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST
T ss_pred             CccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCC
Confidence            344555555567888888888541           367999987653221    1222223455666777776544 33 


Q ss_pred             CcEEEEEeccCceeeccc--CCcceeEEEEeCCCCEEEEeeCC------CcEEEEcCCC
Q 019384           81 HTVRRLVFSHGKEDILGK--HDAPVRCIEYSYAAGQVITGSWD------KSLKCWDPRG  131 (342)
Q Consensus        81 ~~i~~w~~~~~~~~~~~~--h~~~V~~~~~~~~~~~l~sgs~D------~~I~iWd~~~  131 (342)
                      .++.+||..+.....+..  ....-.+++..+|++.++.|+.+      ..+.+||+.+
T Consensus        98 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          98 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            478899988776432211  11112345667788888887654      3688999865

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.79  E-value=0.63  Score=41.83  Aligned_cols=52  Identities=15%  Similarity=0.271  Sum_probs=38.6

Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeccCC-CCcceEEEEECCCCC-EEEEEEe
Q 019384          254 IYGTFATGGCDGFVNVWDGNNKKRLYQYSK-YPTSIAALSFSRDGR-LLAVASS  305 (342)
Q Consensus       254 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~-~~~~V~~v~~spdg~-~las~s~  305 (342)
                      .+..++.|+.||.++.+|.++++.+.++.. ....-.-+.|..||+ |+++...
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~g  527 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYG  527 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEec
Confidence            466778899999999999999999876642 222234477778997 7777665

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.53  E-value=0.1  Score=44.94  Aligned_cols=259  Identities=10%  Similarity=0.077  Sum_probs=125.5

Q ss_pred             EEEEcC---CCCeEEEE-eCCCcEEEEECCCceeee--eeecCCceEEEEEe--CCCCeEEEecCC--------------
Q 019384           24 NLRFSN---HSDHLLVS-SWDKSVRLYDASANVLRG--EFMHGGPVLDCCFH--DDSSGFSASADH--------------   81 (342)
Q Consensus        24 ~l~fs~---~~~~l~s~-s~Dgti~vwd~~~~~~~~--~~~h~~~V~~~~~~--~~~~~~s~s~D~--------------   81 (342)
                      .++|..   ||++|... ..+.+|-+-|++..+...  +.-....+..+...  +....+.+....              
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            566664   78887655 578999999998876533  33334455665554  232233332221              


Q ss_pred             -----cEEEEEeccCceeecccCCcceeEEEEeCCCCEEEEeeCCC--cEEEEcCCCCCCcceeeeeecCCCCcEEEEe-
Q 019384           82 -----TVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDK--SLKCWDPRGASGQERTLVGTYPQPERVYSLS-  153 (342)
Q Consensus        82 -----~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sgs~D~--~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s-  153 (342)
                           .+...|.++.+...-..-......++++++|+.+++.+.+.  .+.+-+.....            ...+..+. 
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e------------~D~i~V~n~  236 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAE------------MDHIVVFNI  236 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCS------------EEEEEEEEH
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhccccc------------ceEEEEech
Confidence                 13345555444221111112355688889998877665432  22222211100            00011111 


Q ss_pred             -------ccCCeEEEEEcCCeEEEEeCCCCCC-cccccccccceeeEEEEEeeCCceEEEEc-cCCeEEEEEeechhhhh
Q 019384          154 -------LVGNRLVVATAGRHVNVYDLRNMSQ-PEQRRESSLKYQTRCVRCYPNGTGYALSS-VEGRVAMEFFDLSEASQ  224 (342)
Q Consensus       154 -------~~~~~~~~~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~~i~~~d~~~~~~  224 (342)
                             .+++.-..    +.+.+.|.+.... ...+. .+.+...-.+..+|||+++++++ .+.++.  ++|++....
T Consensus       237 ~rie~av~~Gk~~ei----ngV~VVD~~~~~~~~v~~y-IPVpKsPHGV~vSPDGKyi~VaGKLs~tVS--ViD~~Ki~~  309 (459)
T d1fwxa2         237 AEIEKAIAAGDYQEL----NGVKVVDGRKEASSLFTRY-IPIANNPHGCNMAPDKKHLCVAGKLSPTVT--VLDVTRFDA  309 (459)
T ss_dssp             HHHHHHHHHTCSEEE----TTEEEEECSGG--CSSEEE-EEEESSCCCEEECTTSSEEEEECTTSSBEE--EEEGGGHHH
T ss_pred             HHhHHhhhcCCcEEe----CCceeecccccCCcceeEE-EecCCCCCceEECCCCCEEEEeCCcCCcEE--EEEehhhhh
Confidence                   11221111    2366777764211 11111 11222234577899999987765 455554  578753211


Q ss_pred             cc----cceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeEEEEeCCCc----------eeeecc-----CCCC
Q 019384          225 AK----KYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFVNVWDGNNK----------KRLYQY-----SKYP  285 (342)
Q Consensus       225 ~~----~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I~iWd~~~~----------~~~~~~-----~~~~  285 (342)
                      ..    ...-..+.+.+.+-   +|. --+|...|.-+.|---|.+|--|++...          ..+..+     .+|.
T Consensus       310 ~~~~~~~~~~~~~~e~elgl---gPL-ht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~  385 (459)
T d1fwxa2         310 VFYENADPRSAVVAEPELGL---GPL-HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHL  385 (459)
T ss_dssp             HHHSCC-GGGGEEECCBCCS---CEE-EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEE
T ss_pred             hhcccCCccccEEeecccCc---Ccc-ccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCC
Confidence            10    00000111111111   122 2378887766677778999999997421          122222     1232


Q ss_pred             cceEEEEECCCCCEEEEEEe
Q 019384          286 TSIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       286 ~~V~~v~~spdg~~las~s~  305 (342)
                      ....+-...|||+||++...
T Consensus       386 ~~~~g~t~~~dgk~l~~~nk  405 (459)
T d1fwxa2         386 KTVMGETLDATNDWLVCLSK  405 (459)
T ss_dssp             EETTTTSTTCCSSEEEEEES
T ss_pred             ccCcCCcCCCCCCEEEEecc
Confidence            11122234799999998875

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.91  E-value=1.7  Score=34.44  Aligned_cols=202  Identities=12%  Similarity=0.059  Sum_probs=101.5

Q ss_pred             CCcEEEEEeccCceeecccCCcceeEEEEeCCCCEEEE-eeCCCcEEEEcCCCCCC--cceeeeeecCCCCcEEEEeccC
Q 019384           80 DHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVIT-GSWDKSLKCWDPRGASG--QERTLVGTYPQPERVYSLSLVG  156 (342)
Q Consensus        80 D~~i~~w~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s-gs~D~~I~iWd~~~~~~--~~~~~~~~~~~~~~v~~~s~~~  156 (342)
                      ...|+..++++.....+......+..++|.+..+.|+= =..++.|+.-++.....  ..............-+++++.+
T Consensus         9 ~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1           9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence            34577778877664444444556778999987777654 34556777666643211  1111111111122335566655


Q ss_pred             CeEEEE-EcCCeEEEEeCCCCCCcccccccccceeeEEEEEeeCCceEEEEccCCeEEEEEeechhhhhcccceeeeEEe
Q 019384          157 NRLVVA-TAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRK  235 (342)
Q Consensus       157 ~~~~~~-s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~~i~~~d~~~~~~~~~~~~~~h~~  235 (342)
                      +.+..+ ...+.|.+.++.......  ....-...+..++++|....+........-.|.-.+.... ...  .+..   
T Consensus        89 ~~lY~~d~~~~~I~v~~~~g~~~~~--~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs-~~~--~l~~---  160 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTKGVKRKT--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIY--SLVT---  160 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEE--EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEE--EEEC---
T ss_pred             ceEEEEecCCCEEEeEecCCceEEE--EEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC-cee--cccc---
Confidence            555544 455689999987542211  1111123456777787655554443222222333333211 111  0100   


Q ss_pred             cCCCCceeeeeeEEEEcCCCCe-EEEecCCCeEEEEeCCCcee--eeccCCCCcceEEEEEC
Q 019384          236 SEAGRDIVYPVNAIAFHPIYGT-FATGGCDGFVNVWDGNNKKR--LYQYSKYPTSIAALSFS  294 (342)
Q Consensus       236 ~~~~~~~~~~v~~v~~sp~~~~-l~sgs~Dg~I~iWd~~~~~~--~~~~~~~~~~V~~v~~s  294 (342)
                        .  . ....+.+++.+.++. +++-+..+.|...+......  +...........+|++.
T Consensus       161 --~--~-~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~  217 (266)
T d1ijqa1         161 --E--N-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF  217 (266)
T ss_dssp             --S--S-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE
T ss_pred             --c--c-cceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE
Confidence              0  0 112567889887665 45657778999888764332  22222222334567765

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=91.61  E-value=1.2  Score=37.10  Aligned_cols=83  Identities=16%  Similarity=0.143  Sum_probs=54.3

Q ss_pred             eEEEEcCCCCeEEEecCC-CeEEEEeCCCceee--eccCCCCcceEEEEECCCCCEEEEEEeccccCCCCCCCCCcEEEE
Q 019384          247 NAIAFHPIYGTFATGGCD-GFVNVWDGNNKKRL--YQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIFVR  323 (342)
Q Consensus       247 ~~v~~sp~~~~l~sgs~D-g~I~iWd~~~~~~~--~~~~~~~~~V~~v~~spdg~~las~s~~~~~~~~~~~~~~~~~~~  323 (342)
                      .+.++.+++..++.|+.+ .++.+||..+..-.  ..+. ....-.+++..+||++++.|+....     ....+.+.+|
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~~dG~v~v~GG~~~~-----~~~~~~v~~y  152 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ-VARGYQSSATMSDGRVFTIGGSWSG-----GVFEKNGEVY  152 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS-SCCSSCEEEECTTSCEEEECCCCCS-----SSCCCCEEEE
T ss_pred             eEEEEecCCcEEEeecCCCcceeEecCccCccccccccc-ccccccceeeecCCceeeecccccc-----ccccceeeee
Confidence            346788999999998766 58999998765432  2222 1223467888899999998875431     1122357778


Q ss_pred             EccCCccccCCC
Q 019384          324 SVNEIEVKPKPK  335 (342)
Q Consensus       324 ~~~~~~~~~~~~  335 (342)
                      ..+...|..-+.
T Consensus       153 d~~~~~W~~~~~  164 (387)
T d1k3ia3         153 SPSSKTWTSLPN  164 (387)
T ss_dssp             ETTTTEEEEETT
T ss_pred             cCCCCceeecCC
Confidence            777666665444

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=90.73  E-value=0.62  Score=41.77  Aligned_cols=73  Identities=14%  Similarity=0.260  Sum_probs=49.4

Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeccCCCC-cceEEEEECCCCC-EEEEEEecc---------ccCCCCCCCCCcEEE
Q 019384          254 IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYP-TSIAALSFSRDGR-LLAVASSYT---------FEEGDKPHEPDAIFV  322 (342)
Q Consensus       254 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~-~~V~~v~~spdg~-~las~s~~~---------~~~~~~~~~~~~~~~  322 (342)
                      .+..++.|+.||.++.+|.++++.+.++..-. ..-.-+.|.-||+ ||++.+...         ..........+.|++
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~  547 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLV  547 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCCcccccccccccccccCCCCCEEEE
Confidence            46778889999999999999999987664221 1223467778997 777666422         112223455568999


Q ss_pred             EEcc
Q 019384          323 RSVN  326 (342)
Q Consensus       323 ~~~~  326 (342)
                      +.|.
T Consensus       548 F~L~  551 (560)
T d1kv9a2         548 FALD  551 (560)
T ss_dssp             EEET
T ss_pred             EEeC
Confidence            9883

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.10  E-value=0.46  Score=43.06  Aligned_cols=82  Identities=12%  Similarity=0.138  Sum_probs=53.2

Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeccCCC-CcceEEEEECCCCC-EEEEEEecccc----------------------
Q 019384          254 IYGTFATGGCDGFVNVWDGNNKKRLYQYSKY-PTSIAALSFSRDGR-LLAVASSYTFE----------------------  309 (342)
Q Consensus       254 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-~~~V~~v~~spdg~-~las~s~~~~~----------------------  309 (342)
                      .+..++.|+.||.++.+|.++++.+.++..- ...-.-+.|.-||+ |+|+.+..+-.                      
T Consensus       483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~~G~gg~~~~~~~~~~~~~~~~~~~~~~~  562 (596)
T d1w6sa_         483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAF  562 (596)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCTTTTHHHHHTCCCTTCGGGHHHHT
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEEEecCCccccccccccccCccccccccccc
Confidence            4677888999999999999999998766422 11223466777987 77776653210                      


Q ss_pred             --CCCCCCCCCcEEEEEccCCccccCCC
Q 019384          310 --EGDKPHEPDAIFVRSVNEIEVKPKPK  335 (342)
Q Consensus       310 --~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (342)
                        ..........+++++|..-.--|+|+
T Consensus       563 ~~~~~~~~~g~~l~vf~l~g~~~~~~~~  590 (596)
T d1w6sa_         563 KKLANYTQMGGGVVVFSLDGKGPYDDPN  590 (596)
T ss_dssp             TTGGGTCCCCCEEEEEEETTCCTTSSTT
T ss_pred             cccccccCCCCEEEEEEeCCCCCCCCCC
Confidence              01112445679999996544445544

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.02  E-value=4.9  Score=34.03  Aligned_cols=107  Identities=12%  Similarity=0.083  Sum_probs=59.4

Q ss_pred             CeEEEEEcCCCCeEE-EEeC----CCcEEEEECCCceeeeeeecCCceEEEEEeCCCCe-EEEecC--------------
Q 019384           21 GISNLRFSNHSDHLL-VSSW----DKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSG-FSASAD--------------   80 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~-s~s~----Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~-~s~s~D--------------   80 (342)
                      .+...++|||++++| +-+.    --+++++|+.+++.............+.|.++++. +-...|              
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            445678899999987 2222    26899999999876543221112245778766654 333222              


Q ss_pred             --CcEEEEEeccCc---eeecccCC--cceeEEEEeCCCCEEEEe---eCCCcEEEE
Q 019384           81 --HTVRRLVFSHGK---EDILGKHD--APVRCIEYSYAAGQVITG---SWDKSLKCW  127 (342)
Q Consensus        81 --~~i~~w~~~~~~---~~~~~~h~--~~V~~~~~~~~~~~l~sg---s~D~~I~iW  127 (342)
                        ..+.++.+.+..   ...+....  ..+..+..++++++++..   ..+....+|
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~  262 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLW  262 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEE
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEE
Confidence              134555555543   22333332  345567778888876432   223444555

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=89.54  E-value=1.2  Score=38.15  Aligned_cols=19  Identities=21%  Similarity=0.254  Sum_probs=16.3

Q ss_pred             ceEEEEECCCCCEEEEEEe
Q 019384          287 SIAALSFSRDGRLLAVASS  305 (342)
Q Consensus       287 ~V~~v~~spdg~~las~s~  305 (342)
                      ..+.+.+||||+|+.+++.
T Consensus       276 sPHGV~vSPDGKyi~VaGK  294 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGK  294 (459)
T ss_dssp             SCCCEEECTTSSEEEEECT
T ss_pred             CCCceEECCCCCEEEEeCC
Confidence            4578999999999998875

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=89.44  E-value=4.8  Score=33.08  Aligned_cols=153  Identities=14%  Similarity=0.084  Sum_probs=75.6

Q ss_pred             CeEEEEEcCCCCeEEEEeC------------CCcEEEEECCCce--eeeeeecCC-------ceEEEEE--eCCCC--eE
Q 019384           21 GISNLRFSNHSDHLLVSSW------------DKSVRLYDASANV--LRGEFMHGG-------PVLDCCF--HDDSS--GF   75 (342)
Q Consensus        21 ~V~~l~fs~~~~~l~s~s~------------Dgti~vwd~~~~~--~~~~~~h~~-------~V~~~~~--~~~~~--~~   75 (342)
                      +--.+...|+|..+++++.            .|.|.++|++...  ........+       ....+..  .++++  ++
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            3346788899988776642            3899999987542  111111111       1234443  23333  22


Q ss_pred             EE---ecCCcEEEEEeccCcee-----ecc-cCCcceeEEEEeCCCCEEEEe---eCC------------CcEEEEcCCC
Q 019384           76 SA---SADHTVRRLVFSHGKED-----ILG-KHDAPVRCIEYSYAAGQVITG---SWD------------KSLKCWDPRG  131 (342)
Q Consensus        76 s~---s~D~~i~~w~~~~~~~~-----~~~-~h~~~V~~~~~~~~~~~l~sg---s~D------------~~I~iWd~~~  131 (342)
                      ..   ....+|.++++......     .+. ......+.+++..++..++|-   ..+            .+-.+|....
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            32   23456777766543311     111 122446788888888777772   111            1223333222


Q ss_pred             CCCcceeeeeecCCCCcEEEEeccCCeEEEE-EcCCeEEEEeCCCC
Q 019384          132 ASGQERTLVGTYPQPERVYSLSLVGNRLVVA-TAGRHVNVYDLRNM  176 (342)
Q Consensus       132 ~~~~~~~~~~~~~~~~~v~~~s~~~~~~~~~-s~d~~v~iwd~~~~  176 (342)
                      ..  ..........+ .-+.++.+++.++.+ +..++|+.|++...
T Consensus       196 ~~--~~~~~~~l~~p-NGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         196 ND--VRVVAEGFDFA-NGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             SC--EEEEEEEESSE-EEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             Cc--eEEEcCCCCcc-ceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            11  11222222221 223456666655544 66678999998653

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.55  E-value=4.6  Score=31.75  Aligned_cols=218  Identities=7%  Similarity=-0.007  Sum_probs=103.7

Q ss_pred             CcEEEEECCCceeeeeeecCCceEEEEEeCC-CCeEEE-ecCCcEEEEEeccCc-----eeecccCCcceeEEEEeCCCC
Q 019384           41 KSVRLYDASANVLRGEFMHGGPVLDCCFHDD-SSGFSA-SADHTVRRLVFSHGK-----EDILGKHDAPVRCIEYSYAAG  113 (342)
Q Consensus        41 gti~vwd~~~~~~~~~~~h~~~V~~~~~~~~-~~~~s~-s~D~~i~~w~~~~~~-----~~~~~~h~~~V~~~~~~~~~~  113 (342)
                      ..|+..++.+............+.++.|... +.++-+ ..++.|...++....     ...+......+..+++.+.++
T Consensus        10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            4588888877654444445567788888754 444433 345556655554321     122333334577899988776


Q ss_pred             EEE-EeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc--CCeEEEEEc--CCeEEEEeCCCCCCcccccccccc
Q 019384          114 QVI-TGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV--GNRLVVATA--GRHVNVYDLRNMSQPEQRRESSLK  188 (342)
Q Consensus       114 ~l~-sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~--d~~v~iwd~~~~~~~~~~~~~~~~  188 (342)
                      .|+ +-...+.|.+.++....  .......  .......+..+  ...+.....  ...|...++..... .......+ 
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~--~~~~~~~--~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~-~~l~~~~~-  163 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVK--RKTLFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENI-  163 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSS--EEEEEEC--TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSC-
T ss_pred             eEEEEecCCCEEEeEecCCce--EEEEEcC--CCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce-eccccccc-
Confidence            665 44566789999986422  1121211  11223344433  333333322  23455555543211 11111111 


Q ss_pred             eeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCCCeE
Q 019384          189 YQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGFV  267 (342)
Q Consensus       189 ~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~Dg~I  267 (342)
                      .....+++.+.++.+..+ ...+.+  ...+.....  +......  .  .  ...+ ...+++. .+..+++-..++.|
T Consensus       164 ~~p~gl~iD~~~~~lYw~d~~~~~I--~~~~~dG~~--~~~~~~~--~--~--~~~~-p~~lav~-~~~ly~td~~~~~I  231 (266)
T d1ijqa1         164 QWPNGITLDLLSGRLYWVDSKLHSI--SSIDVNGGN--RKTILED--E--K--RLAH-PFSLAVF-EDKVFWTDIINEAI  231 (266)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEE--EEEETTSCS--CEEEEEC--T--T--TTSS-EEEEEEE-TTEEEEEETTTTEE
T ss_pred             ceeeEEEeeccccEEEEecCCcCEE--EEEECCCCC--EEEEEeC--C--C--cccc-cEEEEEE-CCEEEEEECCCCeE
Confidence            234677777766655544 444443  344542211  1110000  0  0  0011 2345554 34455665666777


Q ss_pred             EEEeCCCce
Q 019384          268 NVWDGNNKK  276 (342)
Q Consensus       268 ~iWd~~~~~  276 (342)
                      +..+..+++
T Consensus       232 ~~~~~~~g~  240 (266)
T d1ijqa1         232 FSANRLTGS  240 (266)
T ss_dssp             EEEETTTCC
T ss_pred             EEEECCCCc
Confidence            776655544

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.21  E-value=0.39  Score=43.37  Aligned_cols=73  Identities=19%  Similarity=0.353  Sum_probs=48.5

Q ss_pred             CCCCeEEEecCCCeEEEEeCCCceeeeccCCCC-cceEEEEECCCCC-EEEEEEeccccC----C------CCCCCCCcE
Q 019384          253 PIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYP-TSIAALSFSRDGR-LLAVASSYTFEE----G------DKPHEPDAI  320 (342)
Q Consensus       253 p~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~-~~V~~v~~spdg~-~las~s~~~~~~----~------~~~~~~~~~  320 (342)
                      ..+..++.|+.||.++.+|.++++.+.++..-. ..-.-+.|..||+ |+|+.+...-..    +      +.....+.|
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ag~g~~~~~~~g~~~~~~~~~~~g~~l  574 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLWGGDMADLTRPVAQGGSF  574 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCTHHHHHHTTCCCCCEE
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCCCccccccccccccccccCCCCEE
Confidence            457788889999999999999999997665221 1223377888996 777666421100    1      123445578


Q ss_pred             EEEEc
Q 019384          321 FVRSV  325 (342)
Q Consensus       321 ~~~~~  325 (342)
                      +++.|
T Consensus       575 ~vF~L  579 (582)
T d1flga_         575 WVFKL  579 (582)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            88877

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=85.19  E-value=0.98  Score=40.52  Aligned_cols=73  Identities=16%  Similarity=0.275  Sum_probs=48.9

Q ss_pred             CCCeEEEecCCCeEEEEeCCCceeeeccCCCCc-ceEEEEECCCCC-EEEEEEeccc-----cCCCCCCCCCcEEEEEcc
Q 019384          254 IYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPT-SIAALSFSRDGR-LLAVASSYTF-----EEGDKPHEPDAIFVRSVN  326 (342)
Q Consensus       254 ~~~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~-~V~~v~~spdg~-~las~s~~~~-----~~~~~~~~~~~~~~~~~~  326 (342)
                      .+..|+.|+.||.++.+|.++++.+.++..-.+ .-.-+.|.-||+ |+++.+....     .........+.+++++|.
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~  566 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG  566 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCCcccccccccccCCCCCEEEEEEeC
Confidence            567888899999999999999999876642211 112366777897 7777665321     112234455678999884

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.55  E-value=7.7  Score=30.33  Aligned_cols=235  Identities=9%  Similarity=0.060  Sum_probs=119.8

Q ss_pred             CcEEEEECCCcee------eeeeecCCceEEEEEeC-CCCeEE-EecCCcEEEEEeccCceee-cccCCcceeEEEEeCC
Q 019384           41 KSVRLYDASANVL------RGEFMHGGPVLDCCFHD-DSSGFS-ASADHTVRRLVFSHGKEDI-LGKHDAPVRCIEYSYA  111 (342)
Q Consensus        41 gti~vwd~~~~~~------~~~~~h~~~V~~~~~~~-~~~~~s-~s~D~~i~~w~~~~~~~~~-~~~h~~~V~~~~~~~~  111 (342)
                      +.|+-.+++....      .....+...+.+++|.. .+.++- -..++.|+..++....... +..-...+.++++.+-
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~   89 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEecc
Confidence            4666666654321      11223444577888874 444553 3456678877877665433 3333356889999887


Q ss_pred             CCEEE-EeeCCCcEEEEcCCCCCCcceeeeeecCCCCcEEEEecc--CCeEEEEEcC-Ce--EEEEeCCCCCCccccccc
Q 019384          112 AGQVI-TGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLV--GNRLVVATAG-RH--VNVYDLRNMSQPEQRRES  185 (342)
Q Consensus       112 ~~~l~-sgs~D~~I~iWd~~~~~~~~~~~~~~~~~~~~v~~~s~~--~~~~~~~s~d-~~--v~iwd~~~~~~~~~~~~~  185 (342)
                      ++.|+ +-...+.|.+.++.....   ..+... .......+..+  ...+.....+ +.  |...++...... .....
T Consensus        90 ~~~lY~~d~~~~~I~~~~~dg~~~---~~l~~~-~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~-~i~~~  164 (263)
T d1npea_          90 GRTIFWTDSQLDRIEVAKMDGTQR---RVLFDT-GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQD  164 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSC---EEEECS-SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEECT
T ss_pred             CCeEEEeccCCCEEEEEecCCceE---EEEecc-cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce-eeeee
Confidence            77775 555667999999864322   122211 11223344443  3344333222 23  433445432211 11111


Q ss_pred             ccceeeEEEEEeeCCceEEEE-ccCCeEEEEEeechhhhhcccceeeeEEecCCCCceeeeeeEEEEcCCCCeEEEecCC
Q 019384          186 SLKYQTRCVRCYPNGTGYALS-SVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCD  264 (342)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~~-s~~~~~~i~~~d~~~~~~~~~~~~~~h~~~~~~~~~~~~v~~v~~sp~~~~l~sgs~D  264 (342)
                      .+ ..+..+++.+.++.+... ...+.+  ...+.....  ....+.       +..  +| ..|++. ++..+++-...
T Consensus       165 ~~-~~P~glaiD~~~~~lYw~d~~~~~I--~~~~~~g~~--~~~v~~-------~~~--~P-~~lav~-~~~lYwtd~~~  228 (263)
T d1npea_         165 NL-GLPNGLTFDAFSSQLCWVDAGTHRA--ECLNPAQPG--RRKVLE-------GLQ--YP-FAVTSY-GKNLYYTDWKT  228 (263)
T ss_dssp             TC-SCEEEEEEETTTTEEEEEETTTTEE--EEEETTEEE--EEEEEE-------CCC--SE-EEEEEE-TTEEEEEETTT
T ss_pred             cc-cccceEEEeecCcEEEEEeCCCCEE--EEEECCCCC--eEEEEC-------CCC--Cc-EEEEEE-CCEEEEEECCC
Confidence            11 234677777766655444 444444  345543221  111111       111  12 356665 45566777778


Q ss_pred             CeEEEEeCCCceeeeccC-CCCcceEEEEECCC
Q 019384          265 GFVNVWDGNNKKRLYQYS-KYPTSIAALSFSRD  296 (342)
Q Consensus       265 g~I~iWd~~~~~~~~~~~-~~~~~V~~v~~spd  296 (342)
                      ++|...|..+++.+..+. .......++++-++
T Consensus       229 ~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         229 NSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             TEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             CEEEEEECCCCccceEECCCCCCCcceEEEeCC
Confidence            899999998887665443 33344556665443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.14  E-value=10  Score=30.58  Aligned_cols=105  Identities=6%  Similarity=0.053  Sum_probs=67.9

Q ss_pred             EEEEcCCCCeEEEEeCCCcEEEEECCCceeeeeeecCCceEEEEEeCCCCeEEEecCCcEEEEEeccCc--eeecccCC-
Q 019384           24 NLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGK--EDILGKHD-  100 (342)
Q Consensus        24 ~l~fs~~~~~l~s~s~Dgti~vwd~~~~~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~i~~w~~~~~~--~~~~~~h~-  100 (342)
                      +.-.+|..+.||.-+ ..++.|||+.+...+.......+|.-..|..+..+.. -.+..+.-|+++...  .+++..|. 
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~l-VT~taVYHW~~~g~s~P~k~fdR~~~  144 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL-VTDNAVYHWSMEGESQPVKMFDRHSS  144 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEE-ECSSEEEEEESSSSCCCEEEEECCGG
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEE-EcCCceEEEcccCCCCchhhhhhccc
Confidence            445578888887665 5689999998876666666677888888976655432 335678899985433  34444443 


Q ss_pred             ---cceeEEEEeCCCCEEEE---eeCC----CcEEEEcCC
Q 019384          101 ---APVRCIEYSYAAGQVIT---GSWD----KSLKCWDPR  130 (342)
Q Consensus       101 ---~~V~~~~~~~~~~~l~s---gs~D----~~I~iWd~~  130 (342)
                         .+|-.-..+++.+.++-   +..+    |.+.+|..+
T Consensus       145 L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e  184 (327)
T d1utca2         145 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD  184 (327)
T ss_dssp             GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred             ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec
Confidence               35656666777776532   1223    567788765

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.44  E-value=10  Score=29.53  Aligned_cols=154  Identities=10%  Similarity=0.057  Sum_probs=87.7

Q ss_pred             CCCeEEEEEcCCCCeEE-EEeCCCcEEEEECCCceeeeeee-cCCceEEEEEe-CCCCeE-EEecCCcEEEEEeccCcee
Q 019384           19 SDGISNLRFSNHSDHLL-VSSWDKSVRLYDASANVLRGEFM-HGGPVLDCCFH-DDSSGF-SASADHTVRRLVFSHGKED   94 (342)
Q Consensus        19 ~~~V~~l~fs~~~~~l~-s~s~Dgti~vwd~~~~~~~~~~~-h~~~V~~~~~~-~~~~~~-s~s~D~~i~~w~~~~~~~~   94 (342)
                      ...|..|+|+...+.|. +-..+++|+..++.+........ -.+.+.++++. ..+.++ +-...+.|.+.+++.....
T Consensus        35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~  114 (263)
T d1npea_          35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR  114 (263)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEE
Confidence            34577899998766655 44566889888887654433332 22467788886 355555 4445667888887765544


Q ss_pred             ec-ccCCcceeEEEEeCCCCEEEEeeCC-CcEEEE--cCCCCCCcceeeeeecCCCC-cEEEEeccCCeEEEE-EcCCeE
Q 019384           95 IL-GKHDAPVRCIEYSYAAGQVITGSWD-KSLKCW--DPRGASGQERTLVGTYPQPE-RVYSLSLVGNRLVVA-TAGRHV  168 (342)
Q Consensus        95 ~~-~~h~~~V~~~~~~~~~~~l~sgs~D-~~I~iW--d~~~~~~~~~~~~~~~~~~~-~v~~~s~~~~~~~~~-s~d~~v  168 (342)
                      .+ .........+++.|...+++-.... +.-+||  ++... .  ...+....... .-++++...+.+..+ ...+.|
T Consensus       115 ~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~-~--~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I  191 (263)
T d1npea_         115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-N--RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA  191 (263)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-C--CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC-C--ceeeeeecccccceEEEeecCcEEEEEeCCCCEE
Confidence            33 3333678899999987776533222 233444  44321 1  12222111111 123444445666544 445678


Q ss_pred             EEEeCCC
Q 019384          169 NVYDLRN  175 (342)
Q Consensus       169 ~iwd~~~  175 (342)
                      ...|+..
T Consensus       192 ~~~~~~g  198 (263)
T d1npea_         192 ECLNPAQ  198 (263)
T ss_dssp             EEEETTE
T ss_pred             EEEECCC
Confidence            8888864