Citrus Sinensis ID: 019385

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILETAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEKRKKRKIKGNSRLSFADDFESENEEENGEIENLKTKRLAQAKLGKDPTVETSFLPDRGVEDDLSVRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccEEEccccccccccccccccEEccccccccccEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHHHHccEcEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccHHHHEEEcccEEEccccHHHHHHHEcccccccccEcccccccccccccccccccccccccEEEcHHHHHccccccccccccccccccccEEEEEcc
Coil and Loop (DISEMBL)
msgmgdgyvgtaqDAVRIRRLEKQREAERRKIQELktksvsdkgqpgllqfgssTSEILETAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEKRKKrkikgnsrlsfaddfeseneeengeienLKTKRLAQAklgkdptvetsflpdrgveddlsvrerqrsnlsvngcsdsgfvsrskfeplqitysywdgaghrRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYvkedliiphqhSFYELIVNKargksgplfhfdvhedvRTIADAtiekdeshagkvverhwyeknkhifpasrweiydptkkwerytihgd
Flexible Loop (DISEMBL)
msgmgdgyvgtaqdavrirRLEKQREaerrkiqelktksvsdkgqpgllqfgsstsEILETafkketvglvtreeyvekrvnirnkieeeeKEKLQKLLQEEEELQLekrkkrkikgnsrlsfaddfeseneeengeienlktkrlaqaklgkdptvetsflpdrgveddlsvrerqrsnlsvngcsdsgfvsrskfepLQITYsywdgaghRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADatiekdeshagkvverhwyeknkhifpasrweiydptkkWERYTIHGD
Low Complexity Region (SEG)
MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILETAFKKETVGLVTREEYVEKRVNIRNkieeeekeklqkllqeeeelqlekrkkrkikGNSRLSFADDFeseneeengeienLKTKRLAQAKLGKDPTVETSFLPDRGVEDDLSVRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD
Disordered region (IsUnstruct)
*********************************************************ILETAFKKETVGLVTREEYVEKRVN************************************************************************************************************FVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTI***
Disordered Region (DISOPRED)
**************************************************************FKKETVGLVTREE***************************************************************************************************************************PLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVH****************HAGKVVERHWYEKNKHIFPASRWEIYDPTKKWE*YTIH**
Disordered Region (DISEMBL)
MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILETAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEKRKKRKIKGNSRLSFADD***********IENLKTKRLAQAKLGKDPTVETSFLPDRGVEDDLSVRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD
Disordered Region (DISPRO)
**********T*QDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILETAFKKETVGLVTREEYVEKRVNIRNKIEEEEK***************************************************************TVETSFLPDRGVEDDLSVRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDV************SHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGMGDGYVGTAQDAVRxxxxxxxxxxxxxxxxxxxxxSVSDKGQPGLLQFGSSTSEILETAFKKETVGLVTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSRLSFxxxxxxxxxxxxxxxxxxxxxRLAQAKLGKDPTVETSFLPDRGVEDDLSVRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
Q8H110	337	Protein XAP5 CIRCADIAN TI	yes	no	0.982	0.997	0.787	1e-137
Q69JZ7	333	Protein XAP5 CIRCADIAN TI	yes	no	0.970	0.996	0.790	1e-136
B8BDW1	333	Protein XAP5 CIRCADIAN TI	N/A	no	0.970	0.996	0.790	1e-136
Q9WTJ8	334	Protein FAM50B OS=Mus mus	yes	no	0.915	0.937	0.438	6e-66
Q2VPH1	340	Protein FAM50A-A OS=Xenop	N/A	no	0.944	0.95	0.452	1e-65
Q4KLV7	343	Protein FAM50A-B OS=Xenop	N/A	no	0.921	0.918	0.432	2e-64
Q14320	339	Protein FAM50A OS=Homo sa	yes	no	0.935	0.943	0.438	3e-64
Q9WV03	339	Protein FAM50A OS=Mus mus	no	no	0.935	0.943	0.438	3e-64
Q299F9	358	Protein FAM50 homolog OS=	yes	no	0.915	0.874	0.420	3e-62
Q568K9	341	Protein FAM50A OS=Danio r	yes	no	0.929	0.932	0.435	5e-62

>sp|Q8H110|XCT_ARATH Protein XAP5 CIRCADIAN TIMEKEEPER OS=Arabidopsis thaliana GN=XCT PE=1 SV=1

 Score =  487 bits (1254), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/343 (78%), Positives = 297/343 (86%), Gaps = 7/343 (2%)

Query: 1   MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILE 60
           MSGMGDGYVGTAQDAVRIRRL+KQREAER+KIQELK+KS S   Q GLLQFG+S+ EIL+
Sbjct: 1   MSGMGDGYVGTAQDAVRIRRLQKQREAERKKIQELKSKSASGNDQSGLLQFGTSSCEILD 60

Query: 61  TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEKR-KKRKIKGNS 119
           TAFKKETVGLVTREEYVEKRVNIRNK EEEEKEKLQKL QEEEELQLEKR KKRKIKG+S
Sbjct: 61  TAFKKETVGLVTREEYVEKRVNIRNKFEEEEKEKLQKLQQEEEELQLEKRNKKRKIKGSS 120

Query: 120 RLSFADDFESENEEENGEIENLKTKRLAQAKLGKDPTVETSFLPDRGVEDDLSVRERQRS 179
           RLSFA+DFE+ ++E++GE ++  T  L   KLGKDP+VET+FLPD    +  +  + +R 
Sbjct: 121 RLSFAEDFENGSDEDDGENKSSGTGNLRCGKLGKDPSVETNFLPD---SEREAEEQAERE 177

Query: 180 NLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEF 239
            L      +     + K EPL+ITYSYWDG GHRRVIQVRKGD IG FLRAVQQQLAP+F
Sbjct: 178 RLKKQWLREQ---EQIKNEPLEITYSYWDGTGHRRVIQVRKGDPIGNFLRAVQQQLAPDF 234

Query: 240 REIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEK 299
           REIRT SVENLLYVKEDLIIPHQHSFYELI+NKARGKSGPLFHFDVHEDVRTIADATIEK
Sbjct: 235 REIRTASVENLLYVKEDLIIPHQHSFYELIINKARGKSGPLFHFDVHEDVRTIADATIEK 294

Query: 300 DESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 342
           DESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYT+HGD
Sbjct: 295 DESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTVHGD 337

Involved in light regulation of the circadian clock and photomorphogenesis. May play a global role in coordinating growth in response to the light environment. Acts as a light quality sensor directing both negative and positive transcriptional regulation. Inhibits growth in red light but promote growth in blue light. Inhibits clock gene expression in diurnal cycles. Plays no role in the control of flowering time.
Arabidopsis thaliana (taxid: 3702)

>sp|Q69JZ7|XCT_ORYSJ Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa subsp. japonica GN=XCT PE=2 SV=1

 Score =  486 bits (1250), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 271/343 (79%), Positives = 296/343 (86%), Gaps = 11/343 (3%)

Query: 1   MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILE 60
           MSG GDGYVGTAQDAV+IRRLEKQREAERRKI+ELK KS SD GQPGLLQFGSSTSEILE
Sbjct: 1   MSGFGDGYVGTAQDAVKIRRLEKQREAERRKIEELKNKS-SD-GQPGLLQFGSSTSEILE 58

Query: 61  TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEKRKKRKIKGNSR 120
           TAFKKETVGLVTRE+YVEKRVNIR KIEEEEKEKLQKL QEEEELQ++KRKKR+++G+ R
Sbjct: 59  TAFKKETVGLVTREQYVEKRVNIRTKIEEEEKEKLQKLQQEEEELQMQKRKKRRVRGDPR 118

Query: 121 LSFADDFESENEEENGEIENLKT-KRLAQAKLGKDPTVETSFLPDRGVEDDLSVRERQRS 179
           LSF D+ E+ ++E+  E EN +  K+    KLGKDPTVETSFLPD    +  +  + +R 
Sbjct: 119 LSFCDEIENGSDED--EFENQEPQKKHGPVKLGKDPTVETSFLPD---REREAEEQAERE 173

Query: 180 NLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEF 239
            L      +   +   K EPL ITYSYWDG GHRRVIQVRKGD+IGEFLRAVQQQLAPEF
Sbjct: 174 RLKKQWSREQELI---KNEPLTITYSYWDGTGHRRVIQVRKGDSIGEFLRAVQQQLAPEF 230

Query: 240 REIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEK 299
           RE+RTTSVENLLYVKEDLIIPHQHSFYELI+NKARGKSGPLFHFDVHEDVRTIADAT EK
Sbjct: 231 REVRTTSVENLLYVKEDLIIPHQHSFYELIINKARGKSGPLFHFDVHEDVRTIADATKEK 290

Query: 300 DESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 342
           DESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD
Sbjct: 291 DESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 333

Involved in light regulation of the circadian clock and photomorphogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8BDW1|XCT_ORYSI Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa subsp. indica GN=XCT PE=3 SV=1

 Score =  486 bits (1250), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 271/343 (79%), Positives = 296/343 (86%), Gaps = 11/343 (3%)

Query: 1   MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILE 60
           MSG GDGYVGTAQDAV+IRRLEKQREAERRKI+ELK KS SD GQPGLLQFGSSTSEILE
Sbjct: 1   MSGFGDGYVGTAQDAVKIRRLEKQREAERRKIEELKNKS-SD-GQPGLLQFGSSTSEILE 58

Query: 61  TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEKRKKRKIKGNSR 120
           TAFKKETVGLVTRE+YVEKRVNIR KIEEEEKEKLQKL QEEEELQ++KRKKR+++G+ R
Sbjct: 59  TAFKKETVGLVTREQYVEKRVNIRTKIEEEEKEKLQKLQQEEEELQMQKRKKRRVRGDPR 118

Query: 121 LSFADDFESENEEENGEIENLKT-KRLAQAKLGKDPTVETSFLPDRGVEDDLSVRERQRS 179
           LSF D+ E+ ++E+  E EN +  K+    KLGKDPTVETSFLPD    +  +  + +R 
Sbjct: 119 LSFCDEIENGSDED--EFENQEPQKKHGPVKLGKDPTVETSFLPD---REREAEEQAERE 173

Query: 180 NLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEF 239
            L      +   +   K EPL ITYSYWDG GHRRVIQVRKGD+IGEFLRAVQQQLAPEF
Sbjct: 174 RLKKQWSREQELI---KNEPLTITYSYWDGTGHRRVIQVRKGDSIGEFLRAVQQQLAPEF 230

Query: 240 REIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEK 299
           RE+RTTSVENLLYVKEDLIIPHQHSFYELI+NKARGKSGPLFHFDVHEDVRTIADAT EK
Sbjct: 231 REVRTTSVENLLYVKEDLIIPHQHSFYELIINKARGKSGPLFHFDVHEDVRTIADATKEK 290

Query: 300 DESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 342
           DESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD
Sbjct: 291 DESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 333

Involved in light regulation of the circadian clock and photomorphogenesis.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9WTJ8|FA50B_MOUSE Protein FAM50B OS=Mus musculus GN=Fam50b PE=2 SV=1

 Score =  251 bits (640), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 153/349 (43%), Positives = 220/349 (63%), Gaps = 36/349 (10%)

Query: 8   YVGTAQDAVRIRRLEKQREAERRKIQELK--------TKSVSDKGQPGLLQFGSSTSEIL 59
           Y GT ++A R   L K+RE ++ +++ LK         KS  DK      +F S+  + +
Sbjct: 4   YKGTMREAGRAMHLIKKREKQKEQMEVLKQRIAEETIMKSKVDK------KF-SAHYDAV 56

Query: 60  ETAFKKETVGLVTREEYVEKRVNI--RNKIEEEEKEKLQKLLQEEEELQLEKRKKRKIKG 117
           E   K  TVGLVT  +   K+  +    +++  ++E+L++   + E L+ ++R++ + + 
Sbjct: 57  EAELKSSTVGLVTLNDMKAKQEALLREREMQLAKREQLEQRRIQLEMLREKERRRERKRK 116

Query: 118 NSRLSFADDFESENEEENGEIENLKTKRL-AQAKLGKDPTVETSFLPDRGVEDDLSV--- 173
            S LSF  D E  ++E++ + E+ +     A+  LGK+P V+TSFLPDR  E++ +    
Sbjct: 117 ISNLSFTLDEEEGDQEDSRQAESAEAHSAGAKKNLGKNPDVDTSFLPDREREEEENRLRE 176

Query: 174 ---RERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRA 230
              +E +     V G            E ++IT+SYWDG+GHRR +++ KG T+ +FL+ 
Sbjct: 177 ELRQEWEAKREKVKG------------EEVEITFSYWDGSGHRRTVRMSKGSTVQQFLKR 224

Query: 231 VQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVR 290
             Q L  +FRE+R   VE L+YVKEDLI+PH H+FY+ IV KARGKSGPLF FDVH+DVR
Sbjct: 225 ALQGLRRDFRELRAAGVEQLMYVKEDLILPHYHTFYDFIVAKARGKSGPLFSFDVHDDVR 284

Query: 291 TIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTI 339
            ++DAT+EKDESHAGKVV R WYEKNKHIFPASRWE YDP KKW+RYTI
Sbjct: 285 LLSDATMEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDRYTI 333

Mus musculus (taxid: 10090)

>sp|Q2VPH1|F50AA_XENLA Protein FAM50A-A OS=Xenopus laevis GN=fam50a-a PE=2 SV=1

 Score =  250 bits (638), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 156/345 (45%), Positives = 224/345 (64%), Gaps = 22/345 (6%)

Query: 8   YVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKG-QPGLLQFGSSTSEILETAFKKE 66
           Y G A +A R  +L K+RE +R +++++K K   +   +  + +  S+  + +E   K  
Sbjct: 4   YKGAASEAGRAMQLMKKREKQREQLEQMKLKIAEENVVKANINKKFSAHYDAVEAELKSS 63

Query: 67  TVGLVTREEYVEKR---VNIRNK--IEEEEKEKLQKLLQEEEELQLEKRKKRKIKGNSRL 121
           TVGLVT  +   K+   V  R K   ++E+ + LQ +L+++ E + +K +KRKI   + L
Sbjct: 64  TVGLVTLNDMKAKQEALVKEREKQLAKKEQFKDLQLMLEKQRERERKKEQKRKI---ASL 120

Query: 122 SF-------ADDFESENEEENGEIENLKTKRLAQAKLGKDPTVETSFLPDRGVEDDLSVR 174
           SF        +D E E EE + E    + K+  + KLGK+P V+TSFLPDR  E++ +  
Sbjct: 121 SFNLEEDEECEDEEGEEEESDKEDPPEEKKKKKKKKLGKNPDVDTSFLPDRDREEEENRL 180

Query: 175 ERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQ 234
             +      +         + K E ++IT+SYWDG+GHRR ++++KG++I +FL+   + 
Sbjct: 181 REELRQEWEHKQE------KIKSEEIEITFSYWDGSGHRRTVKMKKGNSIQQFLQKALES 234

Query: 235 LAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIAD 294
           L  +F E+R+  VE L+Y+KEDLIIPH HSFY+ IV KARGKSGPLF+FDVHEDVR ++D
Sbjct: 235 LRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHEDVRLLSD 294

Query: 295 ATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTI 339
           AT+EKDESHAGKVV R WYEKNKHIFPASRWE YDP KKW++YTI
Sbjct: 295 ATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTI 339

Xenopus laevis (taxid: 8355)

>sp|Q4KLV7|F50AB_XENLA Protein FAM50A-B OS=Xenopus laevis GN=fam50a-b PE=2 SV=1

 Score =  246 bits (627), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/356 (43%), Positives = 226/356 (63%), Gaps = 41/356 (11%)

Query: 8   YVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKG-QPGLLQFGSSTSEILETAFKKE 66
           Y G A +A R  +L K+RE +R +++++K K   +   +  + +  S+  + +E   K  
Sbjct: 4   YKGAASEAGRAMQLMKKREKQREQLEQMKLKIAEENVVKANINKKFSAHYDAVEAELKSS 63

Query: 67  TVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEK-----RKKRKIKGNSRL 121
           TVGLVT  +   K+  +   ++E EK+  +K   ++ +L+LEK     RKK + +  + L
Sbjct: 64  TVGLVTLNDMKAKQEAL---VKEREKQLAKKEQFKDLQLKLEKQRERERKKEQKRKIASL 120

Query: 122 SFADDFESENEEEN---------GEIENL-KTKRLAQAKLGKDPTVETSFLPDRGVEDDL 171
           SF  + + E E+E           + E+L K K+  + +LGK+P V+TSFLPDR  E++ 
Sbjct: 121 SFNLEEDEECEDEESEEEEEEYVADKEDLPKKKKKKKQQLGKNPDVDTSFLPDRDREEEE 180

Query: 172 SVR--------ERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDT 223
           +          ER++  +              K E ++IT+SYWDG+GHRR ++++KG++
Sbjct: 181 NRLREELRQEWERKQEKI--------------KSEEIEITFSYWDGSGHRRTVKMKKGNS 226

Query: 224 IGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHF 283
           I +FL+   + L  +F E+R+  VE L+Y+KEDLIIPH HSFY+ IV KARGKSGPLF+F
Sbjct: 227 IQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNF 286

Query: 284 DVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTI 339
           DVHEDVR ++DA++EKDESHAGKVV R WYEKNKHIFPASRWE YDP KKW++YTI
Sbjct: 287 DVHEDVRLLSDASVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTI 342

Xenopus laevis (taxid: 8355)

>sp|Q14320|FA50A_HUMAN Protein FAM50A OS=Homo sapiens GN=FAM50A PE=1 SV=2

 Score =  246 bits (627), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 152/347 (43%), Positives = 220/347 (63%), Gaps = 27/347 (7%)

Query: 8   YVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDK-GQPGLLQFGSSTSEILETAFKKE 66
           Y G A +A R   L K+RE +R +++++K +   +   +  + +  S+  + +E   K  
Sbjct: 4   YKGAASEAGRAMHLMKKREKQREQMEQMKQRIAEENIMKSNIDKKFSAHYDAVEAELKSS 63

Query: 67  TVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEKRKKRKIKGN-----SRL 121
           TVGLVT  +   K+  +   ++E EK+  +K   +E +++LEK ++++ K       S L
Sbjct: 64  TVGLVTLNDMKAKQEAL---VKEREKQLAKKEQSKELQMKLEKLREKERKKEAKRKISSL 120

Query: 122 SFA---------DDFESENEEENGEIENLKTKRLAQAKLGKDPTVETSFLPDRGVEDDLS 172
           SF          ++ E+   EE  E E + TK+    KLGK+P V+TSFLPDR  E++ +
Sbjct: 121 SFTLEEEEEGGEEEEEAAMYEEEMEREEITTKK---RKLGKNPDVDTSFLPDRDREEEEN 177

Query: 173 VRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQ 232
               +                + K E ++IT+SYWDG+GHRR +++RKG+T+ +FL+   
Sbjct: 178 RLREELRQ------EWEAKQEKIKSEEIEITFSYWDGSGHRRTVKMRKGNTMQQFLQKAL 231

Query: 233 QQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTI 292
           + L  +F E+R+  VE L+Y+KEDLIIPH HSFY+ IV KARGKSGPLF+FDVH+DVR +
Sbjct: 232 EILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDVRLL 291

Query: 293 ADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTI 339
           +DAT+EKDESHAGKVV R WYEKNKHIFPASRWE YDP KKW++YTI
Sbjct: 292 SDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTI 338

May be a DNA-binding protein or transcriptional factor.

Homo sapiens (taxid: 9606)

>sp|Q9WV03|FA50A_MOUSE Protein FAM50A OS=Mus musculus GN=Fam50a PE=2 SV=1

 Score =  245 bits (626), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 152/347 (43%), Positives = 219/347 (63%), Gaps = 27/347 (7%)

Query: 8   YVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDK-GQPGLLQFGSSTSEILETAFKKE 66
           Y G A +A R   L K+RE +R +++++K +   +   +  + +  S+  + +E   K  
Sbjct: 4   YKGAASEAGRAMHLMKKREKQREQMEQMKQRIAEENIMKSNIDKKFSAHYDAVEAELKSS 63

Query: 67  TVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEKRKKRKIKGN-----SRL 121
           TVGLVT  +   K+  +   ++E EK+  +K   +E +L+LEK ++++ K       S L
Sbjct: 64  TVGLVTLNDMKAKQEAL---VKEREKQLAKKEQSKELQLKLEKLREKERKKEAKRKISSL 120

Query: 122 SFA---------DDFESENEEENGEIENLKTKRLAQAKLGKDPTVETSFLPDRGVEDDLS 172
           SF          ++ E    EE  E E + TK+    KLGK+P V+TSFLPDR  E++ +
Sbjct: 121 SFTLEEEEEGVEEEEEMAMYEEELEREEITTKK---KKLGKNPDVDTSFLPDRDREEEEN 177

Query: 173 VRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQ 232
               +                + K E ++IT+SYWDG+GHRR ++++KG+T+ +FL+   
Sbjct: 178 RLREELRQ------EWEAKQEKIKSEEIEITFSYWDGSGHRRTVKMKKGNTMQQFLQKAL 231

Query: 233 QQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTI 292
           + L  +F E+R+  VE L+Y+KEDLIIPH HSFY+ IV KARGKSGPLF+FDVH+DVR +
Sbjct: 232 EILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDDVRLL 291

Query: 293 ADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTI 339
           +DAT+EKDESHAGKVV R WYEKNKHIFPASRWE YDP KKW++YTI
Sbjct: 292 SDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTI 338

May be a DNA-binding protein or transcriptional factor.

Mus musculus (taxid: 10090)

>sp|Q299F9|FAM50_DROPS Protein FAM50 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA11514 PE=3 SV=1

 Score =  239 bits (609), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 154/366 (42%), Positives = 219/366 (59%), Gaps = 53/366 (14%)

Query: 8   YVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILETAFKKET 67
           Y G A +A R  +L K+RE ++++I+  K K   +     +    ++  + +E   K  T
Sbjct: 4   YKGAASEAGRAAQLMKKREIQQQEIEFRKKKIEEELKLEKIENKFATHYDAVEQQLKTST 63

Query: 68  VGLVTREEYVEKRVNI--------RNKIEEEEKEKLQKLLQEEEELQLEKRK-KRKIKGN 118
           +GLVT +E   K+ +I          K +E+++EK + L    E +Q EK K KR+I+  
Sbjct: 64  IGLVTLDEMKAKQEDIVREREKKLAQKKDEKDREKQRAL----EAIQAEKNKQKRQIQA- 118

Query: 119 SRLSF-------------ADDFESENEEEN-----------GEIENLKTKRLAQAKLGKD 154
             LSF              D  ES+ EEE+            EI  +K K     K+ K+
Sbjct: 119 --LSFNLADEDEDDEAADDDHQESDKEEEDKPKAAKWTEMQDEIVPIKKK-----KICKN 171

Query: 155 PTVETSFLPDRGVEDDLS-VRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHR 213
           P V+TSFLPDR  E+  + +RE  R    +         +  K E + IT+SYWDG+GHR
Sbjct: 172 PDVDTSFLPDREREEQENRLRETLRQEWVMQQ-------AELKDEDISITFSYWDGSGHR 224

Query: 214 RVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKA 273
           R +Q++KG++I +FL+   + L  EF E++T   + L+YVKEDLI+PH +SFY+ IV KA
Sbjct: 225 RNVQMKKGNSIYQFLQKCLELLRKEFIELKTVMADQLMYVKEDLILPHHYSFYDFIVTKA 284

Query: 274 RGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKK 333
           RGKSGPLF FDVH+DVR I+DA++EK+ESHAGKV+ R WYE+NKHIFPASRWE YDPTK 
Sbjct: 285 RGKSGPLFQFDVHDDVRMISDASVEKEESHAGKVLLRSWYERNKHIFPASRWEPYDPTKS 344

Query: 334 WERYTI 339
           +++YTI
Sbjct: 345 YDKYTI 350

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q568K9|FA50A_DANRE Protein FAM50A OS=Danio rerio GN=fam50a PE=2 SV=1

 Score =  238 bits (607), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 153/351 (43%), Positives = 223/351 (63%), Gaps = 33/351 (9%)

Query: 8   YVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKG-QPGLLQFGSSTSEILETAFKKE 66
           Y G A +A R  +L K+RE ER ++++LK K   D   +  + +  S+  + +E   K  
Sbjct: 4   YKGAASEAGRAMQLMKKREREREQLEQLKQKIAEDNMVKSNIDKKFSAHYDAVEQELKSS 63

Query: 67  TVGLVTREEYVEKRVNIRNKIEEE--EKEKLQKLLQEEEELQLEKRKKRKIKGNSRLSFA 124
           TVGLVT  +   K+  +  + E++  +KE+ ++L  + E+ + +KRK+ + +  + LSF 
Sbjct: 64  TVGLVTLNDMKAKQEALVKEREKQLAKKEQSKELQLKLEKQKEKKRKEEQKRKIASLSFN 123

Query: 125 DDFESENEEENGEIENLKTKR--------LAQAKLGKDPTVETSFLPDRGVEDDLSVR-- 174
            D   + EEE  E E  +           + + KLGK+P V+TSFLPDR  E++ +    
Sbjct: 124 PDEGEDEEEEEEEEEEEEEDEIEEEICLPVKKKKLGKNPDVDTSFLPDRDREEEENRLRE 183

Query: 175 ------ERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFL 228
                 ER++  +              K E ++IT+SYWDG+GHR+ ++++KG+TI +FL
Sbjct: 184 ELRQEWERKQEKI--------------KSEEIEITFSYWDGSGHRKTVKMKKGNTIQQFL 229

Query: 229 RAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHED 288
           +   + L  +F E+R+  VE+L+Y+KEDLIIPH HSFY+ IV KARGKSGPLF+FDVH+D
Sbjct: 230 QRALEVLRKDFSELRSAGVEHLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFNFDVHDD 289

Query: 289 VRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTI 339
           +R + DAT+EKDESHAGKVV R WYEKNKHIFPASRWE YDP KKW++YTI
Sbjct: 290 IRLVNDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWDKYTI 340

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
357521279	339	Protein XAP5 CIRCADIAN TIMEKEEPER [Medic	0.982	0.991	0.805	1e-148
255576717	334	Protein FAM50A, putative [Ricinus commun	0.976	1.0	0.827	1e-146
224078087	336	predicted protein [Populus trichocarpa]	0.982	1.0	0.812	1e-145
449489699	335	PREDICTED: protein XAP5 CIRCADIAN TIMEKE	0.979	1.0	0.830	1e-145
449458568	335	PREDICTED: protein XAP5 CIRCADIAN TIMEKE	0.979	1.0	0.830	1e-144
224105247	336	predicted protein [Populus trichocarpa]	0.982	1.0	0.801	1e-143
359475047	334	PREDICTED: protein XAP5 CIRCADIAN TIMEKE	0.976	1.0	0.824	1e-142
356513101	338	PREDICTED: protein XAP5 CIRCADIAN TIMEKE	0.982	0.994	0.811	1e-140
359475049	343	PREDICTED: protein XAP5 CIRCADIAN TIMEKE	0.976	0.973	0.803	1e-140
302772252	334	hypothetical protein SELMODRAFT_170698 [	0.967	0.991	0.779	1e-140

>gi|357521279|ref|XP_003630928.1| Protein XAP5 CIRCADIAN TIMEKEEPER [Medicago truncatula] gi|355524950|gb|AET05404.1| Protein XAP5 CIRCADIAN TIMEKEEPER [Medicago truncatula]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/345 (80%), Positives = 302/345 (87%), Gaps = 9/345 (2%)

Query: 1   MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILE 60
           MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELK+KS +  GQPGLLQFGSSTSEILE
Sbjct: 1   MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKSKSATSNGQPGLLQFGSSTSEILE 60

Query: 61  TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEKRKKRKIKGNSR 120
           TAFKKETVGLVTREEYVEKRVNI++KIEEEEKEKLQK +QEEEELQL+KRKKRKIKGNSR
Sbjct: 61  TAFKKETVGLVTREEYVEKRVNIQSKIEEEEKEKLQKQIQEEEELQLQKRKKRKIKGNSR 120

Query: 121 LSFADDFE--SENEEENGEIENLKTKRLAQA-KLGKDPTVETSFLPDRGVEDDLSVRERQ 177
           LSF++D +  ++ EEE  +  N++T    +  KLGKDPTVETSFLPD    +  +  + +
Sbjct: 121 LSFSEDIDNDAQEEEEPHQSNNIETNGGVRCGKLGKDPTVETSFLPD---SEREAEEQAE 177

Query: 178 RSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAP 237
           R  L      +   +   + EPLQITYSYWDG GHRRVIQVRKGDTIGEFLRA+QQQLAP
Sbjct: 178 RERLRKQWLREQDQI---RNEPLQITYSYWDGTGHRRVIQVRKGDTIGEFLRAIQQQLAP 234

Query: 238 EFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATI 297
           EFREIRTTSVENLLYVKEDLIIPHQHSFY+LIVNKARGKSGPLFHFDVHEDVRTIADATI
Sbjct: 235 EFREIRTTSVENLLYVKEDLIIPHQHSFYDLIVNKARGKSGPLFHFDVHEDVRTIADATI 294

Query: 298 EKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 342
           EKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD
Sbjct: 295 EKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 339

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576717|ref|XP_002529246.1| Protein FAM50A, putative [Ricinus communis] gi|223531282|gb|EEF33124.1| Protein FAM50A, putative [Ricinus communis]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 283/342 (82%), Positives = 303/342 (88%), Gaps = 8/342 (2%)

Query: 1   MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILE 60
           MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKS SDKGQPGLLQFGSSTSEILE
Sbjct: 1   MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSASDKGQPGLLQFGSSTSEILE 60

Query: 61  TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEKRKKRKIKGNSR 120
           TAFKKETVGLVTRE+YVEKRVNI+ KIEEEEKEKLQKL QEEEELQL KRKKRKIKGNSR
Sbjct: 61  TAFKKETVGLVTREQYVEKRVNIQIKIEEEEKEKLQKLRQEEEELQLAKRKKRKIKGNSR 120

Query: 121 LSFADDFESENEEENGEIENLKTKRLAQAKLGKDPTVETSFLPDRGVEDDLSVRERQRSN 180
           LSFADD ++ +E+E+ E +  ++KR    K GKDPTVETSFLPD    +  +  + +R  
Sbjct: 121 LSFADDIDNGSEDEDAERKTSESKRCG--KFGKDPTVETSFLPD---SEREAEEQAERER 175

Query: 181 LSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFR 240
           L      +   +   + EPL+ITYSYWDGAGHRRVIQVRKGD+IGEFLRAVQQQLAPEFR
Sbjct: 176 LRKQWLREQEQI---RNEPLEITYSYWDGAGHRRVIQVRKGDSIGEFLRAVQQQLAPEFR 232

Query: 241 EIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKD 300
           EIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKD
Sbjct: 233 EIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKD 292

Query: 301 ESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 342
           ESHAGKVVERHWYEKNKHIFPASRWEIYDP+KKWERYTIHGD
Sbjct: 293 ESHAGKVVERHWYEKNKHIFPASRWEIYDPSKKWERYTIHGD 334

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078087|ref|XP_002305485.1| predicted protein [Populus trichocarpa] gi|222848449|gb|EEE85996.1| predicted protein [Populus trichocarpa]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 278/342 (81%), Positives = 304/342 (88%), Gaps = 6/342 (1%)

Query: 1   MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILE 60
           MSGMGDGYVGTAQDAVRIRRL+KQREAER KIQELK+KS S K QPGLLQFGSSTSEILE
Sbjct: 1   MSGMGDGYVGTAQDAVRIRRLQKQREAERLKIQELKSKSASAKDQPGLLQFGSSTSEILE 60

Query: 61  TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEKRKKRKIKGNSR 120
           TAFKKETVGLVTRE+YVEKRVNI+ K EEEEKEKL+KL +EEEELQL+KRKKRKIKGNS+
Sbjct: 61  TAFKKETVGLVTREQYVEKRVNIQTKFEEEEKEKLEKLRKEEEELQLQKRKKRKIKGNSK 120

Query: 121 LSFADDFESENEEENGEIENLKTKRLAQAKLGKDPTVETSFLPDRGVEDDLSVRERQRSN 180
           LSFADDFE+ ++EE+GE ++L+ KRL   K GKDPTVETSFLPD    +  +  + +R  
Sbjct: 121 LSFADDFENGSDEEDGENKSLEPKRLVNGKFGKDPTVETSFLPD---SEREAEEQAERER 177

Query: 181 LSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFR 240
           L      +     + + EPL+ITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFR
Sbjct: 178 LRKQWLREQ---EQIRNEPLEITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFR 234

Query: 241 EIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKD 300
           EIRTTSVENLLYVKEDLIIPHQHSFY+LI+NKARGKSGPLFHFDVHEDVRTIADATIEKD
Sbjct: 235 EIRTTSVENLLYVKEDLIIPHQHSFYDLIINKARGKSGPLFHFDVHEDVRTIADATIEKD 294

Query: 301 ESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 342
           ESHAGKVVERHWYEKNKHIFPASRWEIYDPT+KWERYTIHGD
Sbjct: 295 ESHAGKVVERHWYEKNKHIFPASRWEIYDPTQKWERYTIHGD 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489699|ref|XP_004158390.1| PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER-like [Cucumis sativus]

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 284/342 (83%), Positives = 308/342 (90%), Gaps = 7/342 (2%)

Query: 1   MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILE 60
           MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELK K+ S KGQPGLLQFGSSTSEILE
Sbjct: 1   MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKAKTASAKGQPGLLQFGSSTSEILE 60

Query: 61  TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEKRKKRKIKGNSR 120
           TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKL QEEEELQL+KR+KRKI+GNSR
Sbjct: 61  TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLQQEEEELQLQKRRKRKIRGNSR 120

Query: 121 LSFADDFESENEEENGEIENLKTKRLAQAKLGKDPTVETSFLPDRGVEDDLSVRERQRSN 180
           LSF+DDFE+ ++E++ + +NL++K+L + KLGKDPTVETSFLPD    +  +  + +R  
Sbjct: 121 LSFSDDFENGSDEDD-DNKNLESKKLGRGKLGKDPTVETSFLPD---SEREAEEQAERER 176

Query: 181 LSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFR 240
           L      +     + + EPL+ITYSYWDGAGHRRVIQ RKGDTIGEFLRAVQQQLAPEFR
Sbjct: 177 LKRQWLREQ---EQIRNEPLEITYSYWDGAGHRRVIQARKGDTIGEFLRAVQQQLAPEFR 233

Query: 241 EIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKD 300
           EIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKD
Sbjct: 234 EIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKD 293

Query: 301 ESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 342
           ESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD
Sbjct: 294 ESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 335

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458568|ref|XP_004147019.1| PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER-like [Cucumis sativus]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 284/342 (83%), Positives = 307/342 (89%), Gaps = 7/342 (2%)

Query: 1   MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILE 60
           MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELK K+ S KGQPGLLQFGSSTSEILE
Sbjct: 1   MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKAKTASAKGQPGLLQFGSSTSEILE 60

Query: 61  TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEKRKKRKIKGNSR 120
           TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKL QEEEELQL+KR+KRKI+GNSR
Sbjct: 61  TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLQQEEEELQLQKRRKRKIRGNSR 120

Query: 121 LSFADDFESENEEENGEIENLKTKRLAQAKLGKDPTVETSFLPDRGVEDDLSVRERQRSN 180
           LSF+DDFE+ ++E++ + +NL+ K+L + KLGKDPTVETSFLPD    +  +  + +R  
Sbjct: 121 LSFSDDFENGSDEDD-DNKNLEPKKLGRGKLGKDPTVETSFLPD---SEREAEEQAERER 176

Query: 181 LSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFR 240
           L      +     + + EPL+ITYSYWDGAGHRRVIQ RKGDTIGEFLRAVQQQLAPEFR
Sbjct: 177 LKRQWLREQ---EQIRNEPLEITYSYWDGAGHRRVIQARKGDTIGEFLRAVQQQLAPEFR 233

Query: 241 EIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKD 300
           EIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKD
Sbjct: 234 EIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKD 293

Query: 301 ESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 342
           ESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD
Sbjct: 294 ESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 335

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105247|ref|XP_002313740.1| predicted protein [Populus trichocarpa] gi|222850148|gb|EEE87695.1| predicted protein [Populus trichocarpa]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 274/342 (80%), Positives = 297/342 (86%), Gaps = 6/342 (1%)

Query: 1   MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILE 60
           MSGMGDGYVGTAQD VRIRRL+KQREAER KIQELKTKS SD GQPGLLQFGSSTSEILE
Sbjct: 1   MSGMGDGYVGTAQDGVRIRRLQKQREAERLKIQELKTKSASDNGQPGLLQFGSSTSEILE 60

Query: 61  TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEKRKKRKIKGNSR 120
           TAFKKETVGLVTRE+YVEKRVNI+ K EEEEKEKL+KL +EEE+LQL+KRKKRKIKG+S+
Sbjct: 61  TAFKKETVGLVTREQYVEKRVNIQTKFEEEEKEKLEKLRKEEEDLQLQKRKKRKIKGSSK 120

Query: 121 LSFADDFESENEEENGEIENLKTKRLAQAKLGKDPTVETSFLPDRGVEDDLSVRERQRSN 180
           LSFADDFE+ ++EE+ E +  +   L + K GKDPTVETSFLPD    +  +  + +R  
Sbjct: 121 LSFADDFENGSDEEDVENKTSEPNNLVRGKFGKDPTVETSFLPD---SEREAEEQAERER 177

Query: 181 LSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFR 240
           L      +   +     EPL+ITYSYWDGAGHRRVIQVRKGD IGEFLR VQQQLAPEFR
Sbjct: 178 LRKQWLREQEQIQN---EPLEITYSYWDGAGHRRVIQVRKGDAIGEFLRGVQQQLAPEFR 234

Query: 241 EIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKD 300
           EIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKD
Sbjct: 235 EIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKD 294

Query: 301 ESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 342
           ESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD
Sbjct: 295 ESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475047|ref|XP_002275138.2| PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER-like isoform 1 [Vitis vinifera] gi|297744659|emb|CBI37921.3| unnamed protein product [Vitis vinifera]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 282/342 (82%), Positives = 299/342 (87%), Gaps = 8/342 (2%)

Query: 1   MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILE 60
           MSGMGDGYVGTAQDAVRIRRLEKQRE ERRKIQELK KS S KGQ GLLQFGS TSEIL+
Sbjct: 1   MSGMGDGYVGTAQDAVRIRRLEKQREVERRKIQELKNKSASSKGQTGLLQFGSGTSEILD 60

Query: 61  TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEKRKKRKIKGNSR 120
           TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKL QEEEELQL+KRKKRKIKGNSR
Sbjct: 61  TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLQQEEEELQLQKRKKRKIKGNSR 120

Query: 121 LSFADDFESENEEENGEIENLKTKRLAQAKLGKDPTVETSFLPDRGVEDDLSVRERQRSN 180
           LSF+DD E+ +EEE+GE E  ++K+    K GKDPTVETSFLPD   E +      +   
Sbjct: 121 LSFSDDIENGSEEEDGENEGKESKKFG--KFGKDPTVETSFLPDSEREAEEQAERERLRK 178

Query: 181 LSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFR 240
           L +          + + EPL+ITYSYWDGAGHRRVIQVRKGD+IGEFLRAVQQQLAPEFR
Sbjct: 179 LWLREQE------QIRNEPLEITYSYWDGAGHRRVIQVRKGDSIGEFLRAVQQQLAPEFR 232

Query: 241 EIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKD 300
           EIRTTSVENLLYVKEDLIIPHQHSFYELI+NKARGKSGPLFHFDVHEDVRTIADATIEKD
Sbjct: 233 EIRTTSVENLLYVKEDLIIPHQHSFYELIINKARGKSGPLFHFDVHEDVRTIADATIEKD 292

Query: 301 ESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 342
           ESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD
Sbjct: 293 ESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 334

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513101|ref|XP_003525252.1| PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER-like [Glycine max]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 279/344 (81%), Positives = 302/344 (87%), Gaps = 8/344 (2%)

Query: 1   MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILE 60
           MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKS S KGQPGLLQFGSSTSEILE
Sbjct: 1   MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSTSAKGQPGLLQFGSSTSEILE 60

Query: 61  TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEKRKKRKIKGNSR 120
           TAFKKETVGLVTRE+YVEKRVNI++KIEEEEKEKLQK  QEEEELQLEKRKKRKI+GNSR
Sbjct: 61  TAFKKETVGLVTREQYVEKRVNIQSKIEEEEKEKLQKQQQEEEELQLEKRKKRKIRGNSR 120

Query: 121 LSFADDFES--ENEEENGEIENLKTKRLAQAKLGKDPTVETSFLPDRGVEDDLSVRERQR 178
           LSFA+D ++  +++E +   +NL+  RL   KLGKDPTVETSFLPD    +  +  + +R
Sbjct: 121 LSFAEDVDNDPQDDEPHHSKDNLEANRLRCGKLGKDPTVETSFLPD---SEREAEEQAER 177

Query: 179 SNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPE 238
             L      +   +   + EPL+ITYSYWDG GHRRVIQVRKGD+IGEFLRAVQQQLAPE
Sbjct: 178 ERLRKQWLREQEQI---RNEPLEITYSYWDGTGHRRVIQVRKGDSIGEFLRAVQQQLAPE 234

Query: 239 FREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIE 298
           FREIRTT+VENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIE
Sbjct: 235 FREIRTTTVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIE 294

Query: 299 KDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 342
           KDESHAGKVVERHWYEKNKHIFPASRWEIYDP KKWERYTIHGD
Sbjct: 295 KDESHAGKVVERHWYEKNKHIFPASRWEIYDPAKKWERYTIHGD 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475049|ref|XP_003631575.1| PREDICTED: protein XAP5 CIRCADIAN TIMEKEEPER-like isoform 2 [Vitis vinifera]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 282/351 (80%), Positives = 298/351 (84%), Gaps = 17/351 (4%)

Query: 1   MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILE 60
           MSGMGDGYVGTAQDAVRIRRLEKQRE ERRKIQELK KS S KGQ GLLQFGS TSEIL+
Sbjct: 1   MSGMGDGYVGTAQDAVRIRRLEKQREVERRKIQELKNKSASSKGQTGLLQFGSGTSEILD 60

Query: 61  TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEKRKKRKIKGNSR 120
           TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKL QEEEELQL+KRKKRKIKGNSR
Sbjct: 61  TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLQQEEEELQLQKRKKRKIKGNSR 120

Query: 121 LSFADDFESENEEENGEIENLKTKRLAQA---------KLGKDPTVETSFLPDRGVEDDL 171
           LSF+DD E+ +EEE+GE  N+    +  A         K GKDPTVETSFLPD   E + 
Sbjct: 121 LSFSDDIENGSEEEDGE--NVWVSPMLSAEGKESKKFGKFGKDPTVETSFLPDSEREAEE 178

Query: 172 SVRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAV 231
                +   L +          + + EPL+ITYSYWDGAGHRRVIQVRKGD+IGEFLRAV
Sbjct: 179 QAERERLRKLWLREQE------QIRNEPLEITYSYWDGAGHRRVIQVRKGDSIGEFLRAV 232

Query: 232 QQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRT 291
           QQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELI+NKARGKSGPLFHFDVHEDVRT
Sbjct: 233 QQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIINKARGKSGPLFHFDVHEDVRT 292

Query: 292 IADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 342
           IADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD
Sbjct: 293 IADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302772252|ref|XP_002969544.1| hypothetical protein SELMODRAFT_170698 [Selaginella moellendorffii] gi|300163020|gb|EFJ29632.1| hypothetical protein SELMODRAFT_170698 [Selaginella moellendorffii]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 269/345 (77%), Positives = 292/345 (84%), Gaps = 14/345 (4%)

Query: 1   MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILE 60
           MSGMGDGYVGTAQDA RIRRLEKQRE ER++IQ+LK KS   +GQ GLLQFGS TSEILE
Sbjct: 1   MSGMGDGYVGTAQDAARIRRLEKQREVERKRIQDLKKKSA--EGQGGLLQFGSGTSEILE 58

Query: 61  TAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLLQEEEELQLEKRKKRKIKGNSR 120
           +AFKKETVGLVTRE++VEKRVN+R KIEEEEKEKLQKL QEEEE QL+KRKKR+ KG SR
Sbjct: 59  SAFKKETVGLVTREQFVEKRVNLRTKIEEEEKEKLQKLAQEEEERQLQKRKKRRAKGPSR 118

Query: 121 LSFADDFESE-NEEENGEI-ENLKTKRLAQAKLGKDPTVETSFLPDRGVE-DDLSVRERQ 177
           LSFAD+ + + +E+ENG     L T +L   K GK+P+VETSFLPDR  E D+ + RER 
Sbjct: 119 LSFADEVDGDTDEDENGSAGMALATSKLG--KFGKNPSVETSFLPDREREADEQAERERL 176

Query: 178 RSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAP 237
           R              +R K EPL+ITYSYWDGAGHRRVIQVRKGDTI EFLRAVQQQLA 
Sbjct: 177 RKQWIQEQ-------TRIKNEPLEITYSYWDGAGHRRVIQVRKGDTIAEFLRAVQQQLAS 229

Query: 238 EFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATI 297
           EFREIRT SVENLLYVKEDLIIPHQHSFYELI NKARGKSGPLFHFDVHED+RTIADATI
Sbjct: 230 EFREIRTASVENLLYVKEDLIIPHQHSFYELITNKARGKSGPLFHFDVHEDIRTIADATI 289

Query: 298 EKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 342
           EKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD
Sbjct: 290 EKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 334

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
TAIR|locus:2046987	337	XCT "AT2G21150" [Arabidopsis t	0.982	0.997	0.693	9.8e-119
ZFIN|ZDB-GENE-050417-110	341	fam50a "family with sequence s	0.535	0.536	0.586	1.6e-67
UNIPROTKB|Q14320	339	FAM50A "Protein FAM50A" [Homo	0.535	0.539	0.596	6.8e-67
UNIPROTKB|E2R0M3	339	FAM50A "Uncharacterized protei	0.535	0.539	0.591	1.4e-66
UNIPROTKB|I3LL51	339	FAM50A "Uncharacterized protei	0.535	0.539	0.591	1.4e-66
MGI|MGI:1351626	339	Fam50a "family with sequence s	0.535	0.539	0.591	1.4e-66
RGD|1560964	339	Fam50a "family with sequence s	0.535	0.539	0.591	1.4e-66
UNIPROTKB|E1BDX9	339	FAM50A "Uncharacterized protei	0.535	0.539	0.586	2.3e-66
RGD|1563458	335	Fam50b "family with sequence s	0.543	0.555	0.592	9.8e-66
MGI|MGI:1351640	334	Fam50b "family with sequence s	0.543	0.556	0.592	2e-65

TAIR|locus:2046987 XCT "AT2G21150" [Arabidopsis thaliana (taxid:3702)]

 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 238/343 (69%), Positives = 257/343 (74%)

Query:     1 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILE 60
             MSGMGDGYVGTAQDAVRIRRL+KQREAER+KIQELK+KS S   Q GLLQFG+S+ EIL+
Sbjct:     1 MSGMGDGYVGTAQDAVRIRRLQKQREAERKKIQELKSKSASGNDQSGLLQFGTSSCEILD 60

Query:    61 TAFKKETVGLVTREEYVEKRVNIRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GNS 119
             TAFKKETVGLVTREEYVEKRVNIRN                                G+S
Sbjct:    61 TAFKKETVGLVTREEYVEKRVNIRNKFEEEEKEKLQKLQQEEEELQLEKRNKKRKIKGSS 120

Query:   120 RLSFADDFXXXXXXXXXXXXXLKTKRLAQAKLGKDPTVETSFLPDRGVEDDLSVRERQRS 179
             RLSFA+DF               T  L   KLGKDP+VET+FLPD   E +    + +R 
Sbjct:   121 RLSFAEDFENGSDEDDGENKSSGTGNLRCGKLGKDPSVETNFLPDSEREAE---EQAERE 177

Query:   180 NLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEF 239
              L      +     + K EPL+ITYSYWDG GHRRVIQVRKGD IG FLRAVQQQLAP+F
Sbjct:   178 RLKKQWLREQ---EQIKNEPLEITYSYWDGTGHRRVIQVRKGDPIGNFLRAVQQQLAPDF 234

Query:   240 REIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEK 299
             REIRT SVENLLYVKEDLIIPHQHSFYELI+NKARGKSGPLFHFDVHEDVRTIADATIEK
Sbjct:   235 REIRTASVENLLYVKEDLIIPHQHSFYELIINKARGKSGPLFHFDVHEDVRTIADATIEK 294

Query:   300 DESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIHGD 342
             DESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYT+HGD
Sbjct:   295 DESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTVHGD 337

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0009637 "response to blue light" evidence=IMP

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0009873 "ethylene mediated signaling pathway" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

ZFIN|ZDB-GENE-050417-110 fam50a "family with sequence similarity 50, member A" [Danio rerio (taxid:7955)]

 Score = 609 (219.4 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
 Identities = 112/191 (58%), Positives = 146/191 (76%)

Query:   150 KLGKDPTVETSFLPDRGVEDDLS-VRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWD 208
             KLGK+P V+TSFLPDR  E++ + +RE  R               + K E ++IT+SYWD
Sbjct:   157 KLGKNPDVDTSFLPDRDREEEENRLREELRQEWERKQ-------EKIKSEEIEITFSYWD 209

Query:   209 GAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYEL 268
             G+GHR+ ++++KG+TI +FL+   + L  +F E+R+  VE+L+Y+KEDLIIPH HSFY+ 
Sbjct:   210 GSGHRKTVKMKKGNTIQQFLQRALEVLRKDFSELRSAGVEHLMYIKEDLIIPHHHSFYDF 269

Query:   269 IVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIY 328
             IV KARGKSGPLF+FDVH+D+R + DAT+EKDESHAGKVV R WYEKNKHIFPASRWE Y
Sbjct:   270 IVTKARGKSGPLFNFDVHDDIRLVNDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPY 329

Query:   329 DPTKKWERYTI 339
             DP KKW++YTI
Sbjct:   330 DPEKKWDKYTI 340

GO:0005634 "nucleus" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q14320 FAM50A "Protein FAM50A" [Homo sapiens (taxid:9606)]

 Score = 616 (221.9 bits), Expect = 6.8e-67, Sum P(2) = 6.8e-67
 Identities = 114/191 (59%), Positives = 146/191 (76%)

Query:   150 KLGKDPTVETSFLPDRGVEDDLS-VRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWD 208
             KLGK+P V+TSFLPDR  E++ + +RE  R               + K E ++IT+SYWD
Sbjct:   155 KLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAKQ-------EKIKSEEIEITFSYWD 207

Query:   209 GAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYEL 268
             G+GHRR +++RKG+T+ +FL+   + L  +F E+R+  VE L+Y+KEDLIIPH HSFY+ 
Sbjct:   208 GSGHRRTVKMRKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDF 267

Query:   269 IVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIY 328
             IV KARGKSGPLF+FDVH+DVR ++DAT+EKDESHAGKVV R WYEKNKHIFPASRWE Y
Sbjct:   268 IVTKARGKSGPLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPY 327

Query:   329 DPTKKWERYTI 339
             DP KKW++YTI
Sbjct:   328 DPEKKWDKYTI 338

GO:0007283 "spermatogenesis" evidence=NAS

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA;NAS

UNIPROTKB|E2R0M3 FAM50A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 613 (220.8 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
 Identities = 113/191 (59%), Positives = 146/191 (76%)

Query:   150 KLGKDPTVETSFLPDRGVEDDLS-VRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWD 208
             KLGK+P V+TSFLPDR  E++ + +RE  R               + K E ++IT+SYWD
Sbjct:   155 KLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAKQ-------EKIKSEEIEITFSYWD 207

Query:   209 GAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYEL 268
             G+GHRR ++++KG+T+ +FL+   + L  +F E+R+  VE L+Y+KEDLIIPH HSFY+ 
Sbjct:   208 GSGHRRTVKMKKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDF 267

Query:   269 IVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIY 328
             IV KARGKSGPLF+FDVH+DVR ++DAT+EKDESHAGKVV R WYEKNKHIFPASRWE Y
Sbjct:   268 IVTKARGKSGPLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPY 327

Query:   329 DPTKKWERYTI 339
             DP KKW++YTI
Sbjct:   328 DPEKKWDKYTI 338

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|I3LL51 FAM50A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 613 (220.8 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
 Identities = 113/191 (59%), Positives = 146/191 (76%)

Query:   150 KLGKDPTVETSFLPDRGVEDDLS-VRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWD 208
             KLGK+P V+TSFLPDR  E++ + +RE  R               + K E ++IT+SYWD
Sbjct:   155 KLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAKQ-------EKIKSEEIEITFSYWD 207

Query:   209 GAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYEL 268
             G+GHRR ++++KG+T+ +FL+   + L  +F E+R+  VE L+Y+KEDLIIPH HSFY+ 
Sbjct:   208 GSGHRRTVKMKKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDF 267

Query:   269 IVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIY 328
             IV KARGKSGPLF+FDVH+DVR ++DAT+EKDESHAGKVV R WYEKNKHIFPASRWE Y
Sbjct:   268 IVTKARGKSGPLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPY 327

Query:   329 DPTKKWERYTI 339
             DP KKW++YTI
Sbjct:   328 DPEKKWDKYTI 338

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1351626 Fam50a "family with sequence similarity 50, member A" [Mus musculus (taxid:10090)]

 Score = 613 (220.8 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
 Identities = 113/191 (59%), Positives = 146/191 (76%)

Query:   150 KLGKDPTVETSFLPDRGVEDDLS-VRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWD 208
             KLGK+P V+TSFLPDR  E++ + +RE  R               + K E ++IT+SYWD
Sbjct:   155 KLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAKQ-------EKIKSEEIEITFSYWD 207

Query:   209 GAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYEL 268
             G+GHRR ++++KG+T+ +FL+   + L  +F E+R+  VE L+Y+KEDLIIPH HSFY+ 
Sbjct:   208 GSGHRRTVKMKKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDF 267

Query:   269 IVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIY 328
             IV KARGKSGPLF+FDVH+DVR ++DAT+EKDESHAGKVV R WYEKNKHIFPASRWE Y
Sbjct:   268 IVTKARGKSGPLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPY 327

Query:   329 DPTKKWERYTI 339
             DP KKW++YTI
Sbjct:   328 DPEKKWDKYTI 338

GO:0005634 "nucleus" evidence=IEA

RGD|1560964 Fam50a "family with sequence similarity 50, member A" [Rattus norvegicus (taxid:10116)]

 Score = 613 (220.8 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
 Identities = 113/191 (59%), Positives = 146/191 (76%)

Query:   150 KLGKDPTVETSFLPDRGVEDDLS-VRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWD 208
             KLGK+P V+TSFLPDR  E++ + +RE  R               + K E ++IT+SYWD
Sbjct:   155 KLGKNPDVDTSFLPDRDREEEENRLREELRQEWEAKQ-------EKIKSEEIEITFSYWD 207

Query:   209 GAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYEL 268
             G+GHRR ++++KG+T+ +FL+   + L  +F E+R+  VE L+Y+KEDLIIPH HSFY+ 
Sbjct:   208 GSGHRRTVKMKKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDF 267

Query:   269 IVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIY 328
             IV KARGKSGPLF+FDVH+DVR ++DAT+EKDESHAGKVV R WYEKNKHIFPASRWE Y
Sbjct:   268 IVTKARGKSGPLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPY 327

Query:   329 DPTKKWERYTI 339
             DP KKW++YTI
Sbjct:   328 DPEKKWDKYTI 338

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BDX9 FAM50A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 611 (220.1 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
 Identities = 112/191 (58%), Positives = 146/191 (76%)

Query:   150 KLGKDPTVETSFLPDRGVEDDLS-VRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWD 208
             K+GK+P V+TSFLPDR  E++ + +RE  R               + K E ++IT+SYWD
Sbjct:   155 KMGKNPDVDTSFLPDRDREEEENRLREELRQEWEAKQ-------EKIKSEEIEITFSYWD 207

Query:   209 GAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYEL 268
             G+GHRR ++++KG+T+ +FL+   + L  +F E+R+  VE L+Y+KEDLIIPH HSFY+ 
Sbjct:   208 GSGHRRTVKMKKGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDF 267

Query:   269 IVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIY 328
             IV KARGKSGPLF+FDVH+DVR ++DAT+EKDESHAGKVV R WYEKNKHIFPASRWE Y
Sbjct:   268 IVTKARGKSGPLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPY 327

Query:   329 DPTKKWERYTI 339
             DP KKW++YTI
Sbjct:   328 DPEKKWDKYTI 338

GO:0005634 "nucleus" evidence=IEA

RGD|1563458 Fam50b "family with sequence similarity 50, member B" [Rattus norvegicus (taxid:10116)]

 Score = 611 (220.1 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
 Identities = 115/194 (59%), Positives = 145/194 (74%)

Query:   147 AQAKLGKDPTVETSFLPDRGVEDDLS-VRERQRSNLSVNGCSDSGFVSRSKFEPLQITYS 205
             A+  LGK+P V+TSFLPDR  E++ + +RE  R               + K E ++IT+S
Sbjct:   148 AKKNLGKNPDVDTSFLPDREREEEENRLREELRQEWEAKR-------EKVKGEEVEITFS 200

Query:   206 YWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSF 265
             YWDG+GHRR +++RKG T+ +FL+   Q L  +FRE+R   VE L+YVKEDLI+PH H+F
Sbjct:   201 YWDGSGHRRTVRMRKGSTVQQFLKRALQGLRRDFRELRAAGVEQLMYVKEDLILPHYHTF 260

Query:   266 YELIVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRW 325
             Y+ IV KARGKSGPLF FDVH+DVR ++DAT+EKDESHAGKVV R WYEKNKHIFPASRW
Sbjct:   261 YDFIVAKARGKSGPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEKNKHIFPASRW 320

Query:   326 EIYDPTKKWERYTI 339
             E YDP KKW++YTI
Sbjct:   321 EPYDPEKKWDKYTI 334

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1351640 Fam50b "family with sequence similarity 50, member B" [Mus musculus (taxid:10090)]

 Score = 608 (219.1 bits), Expect = 2.0e-65, Sum P(2) = 2.0e-65
 Identities = 115/194 (59%), Positives = 144/194 (74%)

Query:   147 AQAKLGKDPTVETSFLPDRGVEDDLS-VRERQRSNLSVNGCSDSGFVSRSKFEPLQITYS 205
             A+  LGK+P V+TSFLPDR  E++ + +RE  R               + K E ++IT+S
Sbjct:   147 AKKNLGKNPDVDTSFLPDREREEEENRLREELRQEWEAKR-------EKVKGEEVEITFS 199

Query:   206 YWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSF 265
             YWDG+GHRR +++ KG T+ +FL+   Q L  +FRE+R   VE L+YVKEDLI+PH H+F
Sbjct:   200 YWDGSGHRRTVRMSKGSTVQQFLKRALQGLRRDFRELRAAGVEQLMYVKEDLILPHYHTF 259

Query:   266 YELIVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRW 325
             Y+ IV KARGKSGPLF FDVH+DVR ++DAT+EKDESHAGKVV R WYEKNKHIFPASRW
Sbjct:   260 YDFIVAKARGKSGPLFSFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEKNKHIFPASRW 319

Query:   326 EIYDPTKKWERYTI 339
             E YDP KKW+RYTI
Sbjct:   320 EPYDPEKKWDRYTI 333

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q14320	FA50A_HUMAN	No assigned EC number	0.4380	0.9356	0.9439	yes	no
Q28BK4	FA50A_XENTR	No assigned EC number	0.4182	0.9269	0.9057	yes	no
Q9VAY7	FAM50_DROME	No assigned EC number	0.4138	0.9356	0.8913	yes	no
Q9WTJ8	FA50B_MOUSE	No assigned EC number	0.4383	0.9152	0.9371	yes	no
B8BDW1	XCT_ORYSI	No assigned EC number	0.7900	0.9707	0.9969	N/A	no
Q7PYQ5	FAM50_ANOGA	No assigned EC number	0.3950	0.9327	0.8910	yes	no
Q299F9	FAM50_DROPS	No assigned EC number	0.4207	0.9152	0.8743	yes	no
Q69JZ7	XCT_ORYSJ	No assigned EC number	0.7900	0.9707	0.9969	yes	no
Q568K9	FA50A_DANRE	No assigned EC number	0.4358	0.9298	0.9325	yes	no
Q8H110	XCT_ARATH	No assigned EC number	0.7871	0.9824	0.9970	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	342
pfam04921	233	pfam04921, XAP5, XAP5, circadian clock regulator	2e-84

>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator

 Score =  254 bits (652), Expect = 2e-84
 Identities = 121/240 (50%), Positives = 161/240 (67%), Gaps = 17/240 (7%)

Query: 111 KKRKIKGNSRLSFADDFESENEEENGEIENLKTKR---------LAQAKLGKDPTVETSF 161
           KK+K K  S+LSF DD E E+E+E  + + +  +            + K+GK+P+V+TSF
Sbjct: 1   KKKKKKKKSKLSFGDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNPSVDTSF 60

Query: 162 LPDRG-VEDDLSVRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRK 220
           LPD+   E +  +RE  R                 K E ++IT+SY+DG GH   ++V+K
Sbjct: 61  LPDKAREEKEAELREELREEFLKK-------QEAVKEEEIEITFSYYDGTGHPGTVRVKK 113

Query: 221 GDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPL 280
           GDTI +FL   ++ LA +FRE+R  SV++L+ VKEDLIIPH + FY+ I+NKARGKSGPL
Sbjct: 114 GDTIWQFLDKCRKVLAKDFRELRRVSVDDLMLVKEDLIIPHHYEFYDFIINKARGKSGPL 173

Query: 281 FHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKWERYTIH 340
           F FDV +DVR I DA +EKD+SHAGKVVER WYE+NKHIFPASRWE YDP K + +YTI 
Sbjct: 174 FDFDVKDDVRLIMDAEVEKDDSHAGKVVERSWYERNKHIFPASRWEEYDPEKDYSKYTIR 233

This protein is found in a wide range of eukaryotes. It is a nuclear protein and is suggested to be DNA binding. In plants, this family is essential for correct circadian clock functioning by acting as a light-quality regulator coordinating the activities of blue and red light signalling pathways during plant growth - inhibiting growth in red light but promoting growth in blue light. Length = 233

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
KOG2894	331	consensus Uncharacterized conserved protein XAP-5	100.0
PF04921	239	XAP5: XAP5, circadian clock regulator; InterPro: I	100.0

>KOG2894 consensus Uncharacterized conserved protein XAP-5 [Function unknown]

Probab=100.00  E-value=2.4e-138  Score=978.69  Aligned_cols=324  Identities=52%  Similarity=0.820  Sum_probs=295.1

Q ss_pred             CCCCCCcHhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCccccccchHHHHHhhhcccccceeHHHHHHHHHHHH
Q 019385            5 GDGYVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILETAFKKETVGLVTREEYVEKRVNIR   84 (342)
Q Consensus         5 ~~~y~g~~~e~~r~~~l~kqRe~~~~~~e~~k~~~~~~~~~~~~~~~f~~~~d~~E~~lk~~TVGLVtl~dfk~kr~~i~   84 (342)
                      +++|+|+|+||+|||||+|+||.++++||.+|++|++++...+|.++|+++||+||+.||++|||||||+||+++|++|+
T Consensus         1 ~a~ykg~~~eagR~~~L~KkRE~qre~ie~~k~k~~e~~~~~~i~~kf~a~ydaVe~~lKssTvGLVtL~Dmk~kqeniV   80 (331)
T KOG2894|consen    1 MAQYKGTASEAGRAMHLMKKRERQREQIEQLKQKIAEENILKGIDNKFSAHYDAVEEELKSSTVGLVTLDDMKAKQENIV   80 (331)
T ss_pred             CCcccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhccccHHHHHHHHhhcccceEEHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHH-HHHhHHHHHHHHH-HHHHhhhhhccCCCCCCcccCCcccccccchhhhhhhhhhhcccCCCCCCCCCCC
Q 019385           85 NKIEEEEKEK-LQKLLQEEEELQL-EKRKKRKIKGNSRLSFADDFESENEEENGEIENLKTKRLAQAKLGKDPTVETSFL  162 (342)
Q Consensus        85 e~~e~e~~~~-~~~~~~~~~~~~~-~k~kk~kk~~k~~LSF~~Deee~~~~~~~~~~~~~~~~~~~~k~gKnP~VdTsFL  162 (342)
                      +..+.+.+.+ ..+.+....+.++ +..|++++++++.|||+.||++|+++.+...     -+.+++++||||+||||||
T Consensus        81 reRekqlak~~~~k~q~k~~e~~~eKe~K~~kkr~~s~LSFa~DdEededD~~~k~-----~~~Kk~klGKdP~VDTSFL  155 (331)
T KOG2894|consen   81 REREKQLAKKKLSKTQQKKRELAREKEEKKEKKRQISRLSFALDDEEDEDDAEEKS-----IPLKKGKLGKDPDVDTSFL  155 (331)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh-----cchhhhhcCCCCCcccccC
Confidence            8666554331 1122222333333 4457778889999999999876555433221     2234789999999999999


Q ss_pred             CCcchhh-hHHHHHHHHHHhHhcCCCCchhhhcccCCceEEEEEeecCCCCcceEEeecCCcHHHHHHHHHHHhhHHhHh
Q 019385          163 PDRGVED-DLSVRERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFRE  241 (342)
Q Consensus       163 PD~~RE~-E~~~Re~LRkE~~~~~~~~~~~Qe~iK~eeI~ItfsYwDGsghrr~v~vkKGdtI~~FL~k~r~~l~~ef~E  241 (342)
                      ||++||+ |+++||+||+||+++       |++||+|+|+|||||||||||||+|+|+|||||+|||.+|+++|+++|+|
T Consensus       156 PDrEREeeEnr~RE~L~~eW~~~-------qe~~K~Eei~it~sYWDGsgHRr~v~~rKGnti~qfL~~~~e~L~kdF~E  228 (331)
T KOG2894|consen  156 PDREREEEENRLREELRQEWEAK-------QEKIKNEEIEITFSYWDGSGHRRNVKVRKGNTIQQFLQKALEQLRKDFRE  228 (331)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHH-------HHHhcCCceEEEEEeecCCCcceeeeecCCChHHHHHHHHHHHHHHHHHH
Confidence            9999999 999999999999999       99999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcCceeeeeCceecCCCcchhhhhhhccCCCCCCccccccCccccccccccccccCCCCceeeecceeccCCcccc
Q 019385          242 IRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFP  321 (342)
Q Consensus       242 lr~vsvd~LMyVKeDlIIPHhytFYdfIvnKarGksGpLF~Fdv~~dvr~~~datvEkdeshagKVV~R~WYErNKHIFP  321 (342)
                      |++++|+|||||||||||||||||||||||||||||||||+||||+|||+++|||+|+|+|||||||+|+||||||||||
T Consensus       229 lrs~~~e~LmyvKEDLIiPH~~sFydfIvtkArGKsGPLF~FDvh~DVR~~sDAt~ekdESHagKvvlRsWYEkNKHIfP  308 (331)
T KOG2894|consen  229 LRSAGVEQLMYVKEDLIIPHHHSFYDFIVTKARGKSGPLFHFDVHDDVRLISDATVEKDESHAGKVVLRSWYEKNKHIFP  308 (331)
T ss_pred             HHHhhHHHhhhhhhheecccchhHHHHHHHHhccCCCCceeeechhhhhhhhhhcccccccccchhhhhhHHhhcCccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceecCCCCCccccccc
Q 019385          322 ASRWEIYDPTKKWERYTIH  340 (342)
Q Consensus       322 ASrWe~yDP~K~y~~Yti~  340 (342)
                      |||||+|||+|.|++|||.
T Consensus       309 ASRWE~~~P~K~~~~~~~~  327 (331)
T KOG2894|consen  309 ASRWEPYDPEKKWDKYTIR  327 (331)
T ss_pred             hhhCcCCCCccccchhhhh
Confidence            9999999999999999996

>PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes

Probab=100.00  E-value=1.8e-109  Score=772.87  Aligned_cols=223  Identities=59%  Similarity=0.991  Sum_probs=204.1

Q ss_pred             HhhhhhccCCCCCCcccCCcccccccchhhh---------------hhhhhhhcccCCCCCCCCCCCCCcchhh-hHHHH
Q 019385          111 KKRKIKGNSRLSFADDFESENEEENGEIENL---------------KTKRLAQAKLGKDPTVETSFLPDRGVED-DLSVR  174 (342)
Q Consensus       111 kk~kk~~k~~LSF~~Deee~~~~~~~~~~~~---------------~~~~~~~~k~gKnP~VdTsFLPD~~RE~-E~~~R  174 (342)
                      ||+++.++++|||++||+++++++.......               ......++|+||||+|+||||||++||+ |+++|
T Consensus         1 KK~kk~~k~kLSF~~deeeee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gkNP~VdTsfLpDk~Re~~E~~~R   80 (239)
T PF04921_consen    1 KKKKKRQKSKLSFGDDEEEEEEEEKEESKKKSKRKEEPREESKDPEDEDEQKKKKLGKNPTVDTSFLPDKEREEEEAQER   80 (239)
T ss_pred             CchhhhhhccCCcCcccccccccccccccccccccccccccccCcccccccccccccCCCCCCcccCCCHHHHHHHHHHH
Confidence            4667788999999999876543221110000               0011237899999999999999999999 99999


Q ss_pred             HHHHHHhHhcCCCCchhhhcccCCceEEEEEeecCCCCcceEEeecCCcHHHHHHHHHHHhhHHhHhhhhcCcCceeeee
Q 019385          175 ERQRSNLSVNGCSDSGFVSRSKFEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVK  254 (342)
Q Consensus       175 e~LRkE~~~~~~~~~~~Qe~iK~eeI~ItfsYwDGsghrr~v~vkKGdtI~~FL~k~r~~l~~ef~Elr~vsvd~LMyVK  254 (342)
                      |+||+||+++       ||+||+|+|+|||||||||||||+|+||||||||+||++||++|+++|+||++||||+|||||
T Consensus        81 e~LRkE~~~~-------Qe~vK~eeI~I~fsywDGs~hrr~v~vKKGdtI~~FL~~~r~~l~~~f~el~~vsvd~LM~Vk  153 (239)
T PF04921_consen   81 EELRKEWLAK-------QEAVKAEEIEIPFSYWDGSGHRRTVRVKKGDTIWQFLEKCRKQLAKEFRELRRVSVDDLMYVK  153 (239)
T ss_pred             HHHHHHHHHH-------HHHHhCCeeEEEEEEECCCCCcceEEEcCCCCHHHHHHHHHHHHHHHhHHHHhcCHhheeeec
Confidence            9999999999       999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceecCCCcchhhhhhhccCCCCCCccccccCccccccccccccccCCCCceeeecceeccCCcccccCCceecCCCCCc
Q 019385          255 EDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEIYDPTKKW  334 (342)
Q Consensus       255 eDlIIPHhytFYdfIvnKarGksGpLF~Fdv~~dvr~~~datvEkdeshagKVV~R~WYErNKHIFPASrWe~yDP~K~y  334 (342)
                      |||||||||||||||+|||+|||||||+||||+|+|+++|+++|+||||+||||+|+||||||||||||+||+|||+|+|
T Consensus       154 edlIiPHhy~FY~fI~nka~GksGpLF~fd~~~d~~~~~d~~~e~~~s~~~KVV~R~WYerNKHIfPAs~We~ydP~k~y  233 (239)
T PF04921_consen  154 EDLIIPHHYTFYDFIVNKARGKSGPLFDFDVHDDVRLISDAEVEKDESHAGKVVDRRWYERNKHIFPASRWEEYDPEKDY  233 (239)
T ss_pred             cceeccCCceeeeeeeccccCCCCCeeeccCCccccccccccccCCCCCcceEEeehHHhhcCcccccccceecCCCcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccc
Q 019385          335 ERYTIH  340 (342)
Q Consensus       335 ~~Yti~  340 (342)
                      ++|||.
T Consensus       234 ~~~~~~  239 (239)
T PF04921_consen  234 SKYTIA  239 (239)
T ss_pred             hheecC
Confidence            999984

Their function is uncertain though they are nuclear proteins, possibly with DNA-binding activity.; GO: 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	342
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 61/445 (13%), Positives = 116/445 (26%), Gaps = 158/445 (35%)

Query: 22  EKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEI----LETAFKKETVG-LVTREEY 76
            K   +   ++       +  K +  + +F      I    L +  K E     +    Y
Sbjct: 57  SKDAVSGTLRLFWT----LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 77  VEKRVNIRNKIE---------EEEKEKLQKLLQE-------------------------- 101
           +E+R  + N  +          +   KL++ L E                          
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 102 ---------------------EEELQLEKRKK--RKIKGN--SRLSFADDFESENEEENG 136
                                  E  LE  +K   +I  N  SR   + + +        
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 137 EIENL-KTKRLAQAKLG----KDPTVETSFLP---------DRGVEDDLSVRERQRSNLS 182
           E+  L K+K      L     ++     +F            + V D LS        +S
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH--IS 290

Query: 183 VNGCSDSGFVSR------SKF-------EPLQITYSYWDGAGHRRVIQVRKGDTIGEFLR 229
           ++  S              K+        P ++         + R + +     I E +R
Sbjct: 291 LDHHSM-TLTPDEVKSLLLKYLDCRPQDLPREVL------TTNPRRLSI-----IAESIR 338

Query: 230 A-------VQQQLAPEFREIRTTSVENL-------LYVK-----EDLIIPHQ-------- 262
                    +     +   I  +S+  L       ++ +         IP          
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 263 --HSFYELIVNKARGKSGPLFHFDVHEDVRTIAD------ATIEKDES-HAGKVVERHWY 313
              S   ++VNK    S  L      E   +I          +E + + H   +V+   Y
Sbjct: 399 VIKSDVMVVVNKLHKYS--LVEKQPKESTISIPSIYLELKVKLENEYALHR-SIVDH--Y 453

Query: 314 EKNKHIFPASRWEIYDPTKKWER-Y 337
              K       ++  D    +   Y
Sbjct: 454 NIPK------TFDSDDLIPPYLDQY 472

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 34/177 (19%), Positives = 71/177 (40%), Gaps = 21/177 (11%)

Query: 17   RIRRLEKQREAERRKIQELKTKSVSDKGQPGLLQFGSSTSEILETAFKKETVGLVTREEY 76
             ++R +++++    +++EL+ K      +  LLQ             + ET      EE 
Sbjct: 865  ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ----------EKLQAETELYAEAEEM 914

Query: 77   VEKRVNIRNKIEEEEKEKLQKLLQEEEE---LQLEKRKKRKIKGNSRLSFAD------DF 127
              +    + ++EE   E   ++ +EEE    LQ EK+K ++   +      +        
Sbjct: 915  RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974

Query: 128  ESENEEENGEIENLKTKRLAQAKLGKDPTVETSFLPDR--GVEDDLSVRERQRSNLS 182
            + E    +G+I+ ++   L         T E   L +R   +  +L+  E +  NL+
Sbjct: 975  QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00