Citrus Sinensis ID: 019408
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 341 | 2.2.26 [Sep-21-2011] | |||||||
| B6YUU9 | 377 | tRNA (guanine(26)-N(2))-d | yes | no | 0.914 | 0.827 | 0.305 | 2e-30 | |
| O59493 | 381 | tRNA (guanine(26)-N(2))-d | yes | no | 0.912 | 0.816 | 0.287 | 4e-30 | |
| Q9V1P3 | 379 | tRNA (guanine(26)-N(2))-d | yes | no | 0.900 | 0.810 | 0.276 | 3e-28 | |
| Q97ZH0 | 378 | tRNA (guanine(26)-N(2))-d | yes | no | 0.868 | 0.783 | 0.298 | 2e-27 | |
| C5A6N2 | 378 | tRNA (guanine(26)-N(2))-d | yes | no | 0.900 | 0.812 | 0.300 | 5e-27 | |
| C3NDZ5 | 378 | tRNA (guanine(26)-N(2))-d | yes | no | 0.914 | 0.825 | 0.276 | 9e-27 | |
| C3NHQ8 | 378 | tRNA (guanine(26)-N(2))-d | yes | no | 0.914 | 0.825 | 0.276 | 9e-27 | |
| P81554 | 381 | tRNA (guanine(26)-N(2))-d | yes | no | 0.920 | 0.824 | 0.279 | 1e-26 | |
| C3MYQ9 | 378 | tRNA (guanine(26)-N(2))-d | yes | no | 0.914 | 0.825 | 0.276 | 1e-26 | |
| C4KH07 | 378 | tRNA (guanine(26)-N(2))-d | yes | no | 0.914 | 0.825 | 0.276 | 1e-26 |
| >sp|B6YUU9|TRM1_THEON tRNA (guanine(26)-N(2))-dimethyltransferase OS=Thermococcus onnurineus (strain NA1) GN=trm1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 163/347 (46%), Gaps = 35/347 (10%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGD----------EKRW 50
+ GIR +RY E A + ND N R+I+ N+K G + EK
Sbjct: 55 LSATGIRGIRYALETPAGEIWLNDINPNAFRLIVDNVKLNFSGELEIEGKMAVLEGEKTL 114
Query: 51 VVTHFDANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTD-GYSS 109
VVT+ DANR+++E + +FD +D+D FGS FL + AVKR G+L +T+TD G
Sbjct: 115 VVTNADANRLMNEQF---RYFDFVDLDPFGSPMEFLDSALRAVKRRGVLAITATDTGVLC 171
Query: 110 GGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFR 169
G +R N L Y A + +E GLR+LIG VR A+ V L +YY H FR
Sbjct: 172 GAYR-NACLRKYLAEPIRGELCHEAGLRILIGTLVRYAAKYDLGVEVLLAYYRDH--YFR 228
Query: 170 VMLRVHRKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWT 229
L++ A ++ + Y + S + +E NT S GPLW
Sbjct: 229 AFLQLRNGAKTADKSMKQLGYL-YQDESGKFEFE----------NTFLPSKATAHGPLWL 277
Query: 230 GPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAK 289
GPL + + ++ L+ + T +K L + DE + +PF Y +A R
Sbjct: 278 GPLKNQEFVEELHRLSAEHPLGSKKT----QKFLGLLKDELE--VPFFY-DTHAVARRHG 330
Query: 290 MNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQ 336
+ L ++ + ++GY A+R+H + A+KT+ P + +ELQ
Sbjct: 331 LEVRKLAGVIEILYEKGYKATRTHFSPTALKTDAPFEEVLEALRELQ 377
|
Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups. Thermococcus onnurineus (strain NA1) (taxid: 523850) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 1EC: 6 |
| >sp|O59493|TRM1_PYRHO tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=trm1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 157/348 (45%), Gaps = 37/348 (10%)
Query: 1 MCGCGIRSLRYLAEAKADFVMAND-GNDAH----RRVILGNLKSIERGSGD-----EKRW 50
+ GIR +R+ E A+ V ND DA+ R V+L + G EK
Sbjct: 58 LSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTI 117
Query: 51 VVTHFDANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSG 110
V+ H DANR+++E + +F ID+D FGS FL T + KR G+L +T+TDG
Sbjct: 118 VINHDDANRLMAE---RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATDGAPLC 174
Query: 111 GHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRV 170
G P L Y A L +E+G R+L+G R A+ + + +YY H FR
Sbjct: 175 GAHPRACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKYDLGIDVILAYYKDH--YFRA 232
Query: 171 MLRVH---RKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPL 227
+++ RK G+I + + G EL Q P GP+
Sbjct: 233 FVKLKDGARKGDETLEKLGYIYFDDKTGKF------ELEQGFLPTRPN-------AYGPV 279
Query: 228 WTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASR 287
W GPL D ++KM+ AE L K++ + +D +P Y + R
Sbjct: 280 WLGPLKDEKIVSKMVKEAESLSLARKKQALKLLKMIDQELD-----IPLFY-DTHAIGRR 333
Query: 288 AKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKEL 335
K+ + ++ ++SA++++GY A+R+H + IKT+ P I K +
Sbjct: 334 LKIETKKVEEIISALREQGYEATRTHFSPTGIKTSAPYEVFIETIKRI 381
|
Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups. Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 6 |
| >sp|Q9V1P3|TRM1_PYRAB tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=trm1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 157/344 (45%), Gaps = 37/344 (10%)
Query: 1 MCGCGIRSLRYLAEAKADFVMAND-GNDAH---RRVILGNLK-SIERGSG-----DEKRW 50
+ GIR +R+ E A+ + ND DA+ ++ +L N K +E +G EK
Sbjct: 55 LSATGIRGIRFALETPAEEIWMNDISEDAYNLMKKNVLLNFKGELEESNGRAVLKSEKTL 114
Query: 51 VVTHFDANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSG 110
VV H DANR+++E K +F ID+D FGS FL T +VKR G+L +T+TDG
Sbjct: 115 VVNHDDANRLMAE---KHRYFHFIDLDPFGSPMEFLDTALRSVKRKGILGITATDGAPLC 171
Query: 111 GHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRV 170
G P + Y A L +E+G R+L+G R A+ + + +YY H FR
Sbjct: 172 GAHPKACMRKYLAVPLRGELCHEVGTRILVGVVARYAAKYDLGIEVILAYYKDH--YFRA 229
Query: 171 MLRVH---RKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPL 227
+++ RK + G+I + G + + S GP+
Sbjct: 230 FIKLKDGARKGDESLENLGYIYFDESTGKFE-------------VERSFLPSKPNAYGPV 276
Query: 228 WTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASR 287
W GPL + +ML ++++ L K+L DE D +P Y + R
Sbjct: 277 WLGPLKSQEIVEEMLEISQQLSLARKKQAVKLLKILK---DELD--VPLFY-DTHGLGRR 330
Query: 288 AKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRI 331
K+ + ++ +++ ++ GY ASR+H + +KT+ P + +
Sbjct: 331 LKIEARKIEEIINELRSLGYRASRTHFSPTGVKTDAPYEVFVNV 374
|
Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups. Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 6 |
| >sp|Q97ZH0|TRM1_SULSO tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=trm1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 168/328 (51%), Gaps = 32/328 (9%)
Query: 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ GIR +RY E+ K++ ++ ND N +I N K+ +G E + DAN
Sbjct: 63 LSATGIRGIRYYVESWKSEQLILNDKNPNATSLIQINAKN----NGIENAKIYNK-DANA 117
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
+L E D IDID FGS + F+ + NA R+G++ T+TD G P +
Sbjct: 118 LLYEVKS-----DYIDIDPFGSPAPFILSSLNAATRNGIVAFTATDLSPLEGSSPTSCRR 172
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVH---R 176
Y A + S E+GLR+LIG +REA+ V PLFS+Y+ + +R+ +RV R
Sbjct: 173 KYDAINHKLSSSKELGLRVLIGKIIREAAILEKTVYPLFSFYADY--YYRLFVRVENGAR 230
Query: 177 KALPD-NRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDA 235
KA + N+H + C CG Q + EE + CP I S + GPL+ GPL+
Sbjct: 231 KADDNINKHLKYFGECPRCG-FQTFV-EENCKTKCPVCGEIFS----IIGPLYIGPLYSM 284
Query: 236 THITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNS-PS 294
+ ++++L + ++ + ++KLL+ + E + R + + ++AS+ K+++ P
Sbjct: 285 EFLKRIMDLYSNFNYL--TSFNRIQKLLN--VIEKEARFKNVFYNISKLASKLKISAIPP 340
Query: 295 LKTMMSAVQKEGYVASRSHIASNAIKTN 322
+++++ + ASR+H A I+T+
Sbjct: 341 IESILECLGD----ASRTHFAPTGIRTD 364
|
Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups. Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid: 273057) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 6 |
| >sp|C5A6N2|TRM1_THEGJ tRNA (guanine(26)-N(2))-dimethyltransferase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=trm1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 156/343 (45%), Gaps = 36/343 (10%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLK-------SIERGSGD----EKR 49
+ GIR LRY E A+ V ND N+ R+IL NL+ + G + EKR
Sbjct: 55 LSATGIRGLRYSLETSAEEVWMNDINEDAFRLILKNLELNFGSKPVLANGRAELGLPEKR 114
Query: 50 WVVTHFDANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTD-GYS 108
VV DAN+++SE + +FD ID+D FGS FL + +V+R G L LT+TD G
Sbjct: 115 LVVNLGDANKLMSENF---RYFDFIDLDPFGSPVEFLDSALRSVRRRGFLGLTATDTGVL 171
Query: 109 SGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVF 168
G +R Y A + +E GLR+LIG VR A+ V L +YY H F
Sbjct: 172 CGAYR-RACRRKYLAEPIRGELCHEAGLRILIGTIVRYAAKYDLGVEVLLAYYRDH--YF 228
Query: 169 RVMLRVHRKALPDNRHYGFISYCNHCGNSQAYSWE-ELGQMSCPCSNTIGSSSLVVSGPL 227
RV LR+ A + + Y W+ E G+ G GP+
Sbjct: 229 RVFLRLRSGAKKADESVELLGYL----------WQDETGKFKYERDFLPGKRG--AYGPM 276
Query: 228 WTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASR 287
W GPL + + +++ L + T + LS +++E D +PF Y +A +
Sbjct: 277 WLGPLKNQAFLEELVRLTKTSEESISHRKTF--QFLSLLVEELD--VPFHY-DTHALARK 331
Query: 288 AKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIR 330
+ + ++ + G+ A+R+H + +IKTN P +R
Sbjct: 332 NGLEVVKISRVIETLHSLGFEATRTHFSPTSIKTNAPFDVVLR 374
|
Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups. Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 6 |
| >sp|C3NDZ5|TRM1_SULIY tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=trm1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 171/340 (50%), Gaps = 28/340 (8%)
Query: 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ GIR +RY E+ K++ ++ ND N +I N+K+ +G E + DAN
Sbjct: 63 LSATGIRGIRYYVESWKSEQLILNDKNSTAASLIQINVKN----NGIENAKIYNK-DANA 117
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
+L E +K E+ IDID FGS F+ + NA R+G++ T+TD G +
Sbjct: 118 LLYE--IKSEY---IDIDPFGSPVPFILSSVNATIRNGIVAFTATDLSPLEGSSRTSCRR 172
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYS-YHGPVFRVMLRVHRKA 178
Y A + S E+GLR+LIG +REA+ V PLFS+Y+ Y+ +F ++ RKA
Sbjct: 173 KYDAINYKLSSSKELGLRILIGKIIREAATLEKTVHPLFSFYADYYYRLFAIVESGARKA 232
Query: 179 LPD-NRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATH 237
+ N++ + C CG ++ +C I + ++ GPL+ GPLH+
Sbjct: 233 DENINKNLKYFGECPRCG------FQTFVDENCKTKCPICGENFIIIGPLYIGPLHNMEF 286
Query: 238 ITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNS-PSLK 296
+ +M++ + ++ + ++KLL+ + E + + + + ++AS+ K+++ P +
Sbjct: 287 LKRMIDTYSDFNYL--SSFNRIQKLLN--VIEKEAKYKSVFYNISKLASKLKVSAIPPID 342
Query: 297 TMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQ 336
+++ + AS++H A I+T+ IR K L+
Sbjct: 343 SILECLGD----ASKTHFAPTGIRTDKGYEEIIRCVKSLR 378
|
Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups. Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) (taxid: 439386) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 6 |
| >sp|C3NHQ8|TRM1_SULIN tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=trm1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 171/340 (50%), Gaps = 28/340 (8%)
Query: 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ GIR +RY E+ K++ ++ ND N +I N+K+ +G E + DAN
Sbjct: 63 LSATGIRGIRYYVESWKSEQLILNDKNSTAASLIQINVKN----NGIENAKIYNK-DANA 117
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
+L E +K E+ IDID FGS F+ + NA R+G++ T+TD G +
Sbjct: 118 LLYE--IKSEY---IDIDPFGSPVPFILSSVNATIRNGIVAFTATDLSPLEGSSRTSCRR 172
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYS-YHGPVFRVMLRVHRKA 178
Y A + S E+GLR+LIG +REA+ V PLFS+Y+ Y+ +F ++ RKA
Sbjct: 173 KYDAINYKLSSSKELGLRILIGKIIREAATLEKTVHPLFSFYADYYYRLFAIVESGARKA 232
Query: 179 LPD-NRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATH 237
+ N++ + C CG ++ +C I + ++ GPL+ GPLH+
Sbjct: 233 DENINKNLKYFGECPRCG------FQTFVDENCKTKCPICGENFIIIGPLYIGPLHNMEF 286
Query: 238 ITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNS-PSLK 296
+ +M++ + ++ + ++KLL+ + E + + + + ++AS+ K+++ P +
Sbjct: 287 LKRMIDTYSDFNYL--SSFNRIQKLLN--VIEKEAKYKSVFYNISKLASKLKVSAIPPID 342
Query: 297 TMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQ 336
+++ + AS++H A I+T+ IR K L+
Sbjct: 343 SILECLGD----ASKTHFAPTGIRTDKGYEEIIRCVKSLR 378
|
Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups. Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) (taxid: 419942) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 6 |
| >sp|P81554|TRM1_PYRFU tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=trm1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 156/344 (45%), Gaps = 30/344 (8%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDA----HRRVILGNLKSIERGSGD------EKRW 50
+ GIR +R+ E A+ + ND N+ ++ +L N K + + EK
Sbjct: 57 LSATGIRGIRFALETPAEEIWMNDINELAYELMKKNVLLNFKGTLKENAKRAIFEGEKTI 116
Query: 51 VVTHFDANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSG 110
V+ + DANR+++E K +F ID+D FGS FL T +VKR G+L +T+TDG
Sbjct: 117 VINNDDANRLMAE---KHRYFHFIDLDPFGSPMEFLDTALRSVKRKGILGVTATDGAPLC 173
Query: 111 GHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRV 170
G P L Y A L +E+G R+L+G R A+ + L +YY H FR
Sbjct: 174 GAHPKACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKYDLGMEVLLAYYKDH--YFRA 231
Query: 171 MLRVHRKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTG 230
+++ A + + Y Y E+ G+ + S+ GPLW G
Sbjct: 232 FVKLKDGAKKGDETLENLGYV--------YFDEKTGRFE--VEKSFLSTRPNAYGPLWLG 281
Query: 231 PLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKM 290
PL + + +ML L V + ++ KLL + +E D +P Y + R K+
Sbjct: 282 PLKNEKVVGEMLELLVSGFEVAN--YREVLKLLHMLHEELD--IPLFY-DTHALGKRLKI 336
Query: 291 NSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKE 334
L ++ ++ GY A+R+H + IKTN P + + ++
Sbjct: 337 EPKKLGEIIKELKSMGYEATRTHFSPTGIKTNAPYEVFVEVMRK 380
|
Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups. Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 6 |
| >sp|C3MYQ9|TRM1_SULIM tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=trm1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 171/340 (50%), Gaps = 28/340 (8%)
Query: 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ GIR +RY E+ K++ ++ ND N +I N+K+ +G E + DAN
Sbjct: 63 LSATGIRGIRYYVESWKSEQLILNDKNSTAASLIQINVKN----NGIENAKIYNK-DANA 117
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
+L E +K E+ IDID FGS F+ + NA R+G++ T+TD G +
Sbjct: 118 LLYE--IKSEY---IDIDPFGSPVPFILSSINATIRNGIVAFTATDLSPLEGSSRTSCRR 172
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYS-YHGPVFRVMLRVHRKA 178
Y A + S E+GLR+LIG +REA+ V PLFS+Y+ Y+ +F ++ RKA
Sbjct: 173 KYDAINYKLSSSKELGLRILIGKIIREAATLEKTVHPLFSFYADYYYRLFVIVESGARKA 232
Query: 179 LPD-NRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATH 237
+ N++ + C CG ++ +C I + ++ GPL+ GPLH+
Sbjct: 233 DENINKNLKYFGECPRCG------FQTFVDENCKTKCPICGENFIIIGPLYIGPLHNMEF 286
Query: 238 ITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNS-PSLK 296
+ +M++ + ++ + ++KLL+ + E + + + + ++AS+ K+++ P +
Sbjct: 287 LKRMIDTYSDFNYL--SSFNRIQKLLN--VIEKEAKYKSVFYNISKLASKLKVSAIPPID 342
Query: 297 TMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQ 336
+++ + AS++H A I+T+ IR K L+
Sbjct: 343 SILECLGD----ASKTHFAPTGIRTDKGYEEIIRCVKSLR 378
|
Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups. Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) (taxid: 427317) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 6 |
| >sp|C4KH07|TRM1_SULIK tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=trm1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 171/340 (50%), Gaps = 28/340 (8%)
Query: 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ GIR +RY E+ K++ ++ ND N +I N+K+ +G E + DAN
Sbjct: 63 LSATGIRGIRYYVESWKSEQLILNDKNSTAASLIQINVKN----NGIENAKIYNK-DANA 117
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
+L E +K E+ IDID FGS F+ + NA R+G++ T+TD G +
Sbjct: 118 LLYE--IKSEY---IDIDPFGSPVPFILSSINATIRNGIVAFTATDLSPLEGSSRTSCRR 172
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYS-YHGPVFRVMLRVHRKA 178
Y A + S E+GLR+LIG +REA+ V PLFS+Y+ Y+ +F ++ RKA
Sbjct: 173 KYDAINYKLSSSKELGLRILIGKIIREAATLEKTVHPLFSFYADYYYRLFVIVESGARKA 232
Query: 179 LPD-NRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATH 237
+ N++ + C CG ++ +C I + ++ GPL+ GPLH+
Sbjct: 233 DENINKNLKYFGECPRCG------FQTFVDENCKTKCPICGENFIIIGPLYIGPLHNMEF 286
Query: 238 ITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNS-PSLK 296
+ +M++ + ++ + ++KLL+ + E + + + + ++AS+ K+++ P +
Sbjct: 287 LKRMIDTYSDFNYL--SSFNRIQKLLN--VIEKEAKYKSVFYNISKLASKLKVSAIPPID 342
Query: 297 TMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQ 336
+++ + AS++H A I+T+ IR K L+
Sbjct: 343 SILECLGD----ASKTHFAPTGIRTDKGYEEIIRCVKSLR 378
|
Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups. Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) (taxid: 426118) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 341 | ||||||
| 225448659 | 424 | PREDICTED: N(2),N(2)-dimethylguanosine t | 0.991 | 0.797 | 0.739 | 1e-153 | |
| 297736506 | 338 | unnamed protein product [Vitis vinifera] | 0.991 | 1.0 | 0.739 | 1e-152 | |
| 255564102 | 422 | N(2),N(2)-dimethylguanosine tRNA methylt | 0.997 | 0.805 | 0.744 | 1e-151 | |
| 224126557 | 428 | predicted protein [Populus trichocarpa] | 0.991 | 0.789 | 0.752 | 1e-150 | |
| 297816958 | 431 | predicted protein [Arabidopsis lyrata su | 0.979 | 0.774 | 0.727 | 1e-145 | |
| 15228894 | 433 | N2,N2-dimethylguanosine tRNA methyltrans | 0.979 | 0.771 | 0.721 | 1e-144 | |
| 449457478 | 467 | PREDICTED: tRNA (guanine(26)-N(2))-dimet | 0.991 | 0.723 | 0.686 | 1e-142 | |
| 449491708 | 440 | PREDICTED: tRNA (guanine(26)-N(2))-dimet | 0.991 | 0.768 | 0.686 | 1e-142 | |
| 356518704 | 432 | PREDICTED: N(2),N(2)-dimethylguanosine t | 0.988 | 0.780 | 0.657 | 1e-135 | |
| 357129459 | 444 | PREDICTED: N(2),N(2)-dimethylguanosine t | 0.985 | 0.756 | 0.582 | 1e-115 |
| >gi|225448659|ref|XP_002274607.1| PREDICTED: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 [Vitis vinifera] gi|147780177|emb|CAN75521.1| hypothetical protein VITISV_043594 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 250/338 (73%), Positives = 297/338 (87%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
MCGCGIRSLRYL EA+ADFV+AND N+ + R IL NL GSG+E+RWVVTH DANRV
Sbjct: 87 MCGCGIRSLRYLVEAEADFVLANDANENYGRTILENLSQGLGGSGEERRWVVTHTDANRV 146
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120
++ECYL+R+F+DLID+DSFGS+SSFLR+ +NA+K DGL Y+TSTDGY+SGGHRP++SLAS
Sbjct: 147 MTECYLRRDFYDLIDVDSFGSESSFLRSAYNALKLDGLFYVTSTDGYTSGGHRPHHSLAS 206
Query: 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALP 180
YGA++ PMPYSNE+GLRMLIGGA+REAS GY ++PLFSYYSYHGPVFRVMLR++R LP
Sbjct: 207 YGAFVRPMPYSNEVGLRMLIGGALREASVLGYRITPLFSYYSYHGPVFRVMLRMNRGKLP 266
Query: 181 DNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATHITK 240
+NR+YGFISYC CGNSQA+SW ELG++SCPCS+ SSSLVVSGPLW GPLH+A+++T+
Sbjct: 267 ENRNYGFISYCTKCGNSQAFSWNELGRISCPCSDAKVSSSLVVSGPLWIGPLHNASYLTE 326
Query: 241 MLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMS 300
MLNLAE+WGW G+ T T L KLL +MIDESDP+LPFGYIKLDE+ASRAK+NSP L+TMMS
Sbjct: 327 MLNLAEQWGWTGNDTETHLGKLLKQMIDESDPKLPFGYIKLDEVASRAKINSPPLRTMMS 386
Query: 301 AVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQGC 338
A+ KEGY SRSHIASNAIKTNCPM CIRIAKELQ C
Sbjct: 387 ALNKEGYAVSRSHIASNAIKTNCPMAVCIRIAKELQQC 424
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736506|emb|CBI25377.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 250/338 (73%), Positives = 297/338 (87%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
MCGCGIRSLRYL EA+ADFV+AND N+ + R IL NL GSG+E+RWVVTH DANRV
Sbjct: 1 MCGCGIRSLRYLVEAEADFVLANDANENYGRTILENLSQGLGGSGEERRWVVTHTDANRV 60
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120
++ECYL+R+F+DLID+DSFGS+SSFLR+ +NA+K DGL Y+TSTDGY+SGGHRP++SLAS
Sbjct: 61 MTECYLRRDFYDLIDVDSFGSESSFLRSAYNALKLDGLFYVTSTDGYTSGGHRPHHSLAS 120
Query: 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALP 180
YGA++ PMPYSNE+GLRMLIGGA+REAS GY ++PLFSYYSYHGPVFRVMLR++R LP
Sbjct: 121 YGAFVRPMPYSNEVGLRMLIGGALREASVLGYRITPLFSYYSYHGPVFRVMLRMNRGKLP 180
Query: 181 DNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATHITK 240
+NR+YGFISYC CGNSQA+SW ELG++SCPCS+ SSSLVVSGPLW GPLH+A+++T+
Sbjct: 181 ENRNYGFISYCTKCGNSQAFSWNELGRISCPCSDAKVSSSLVVSGPLWIGPLHNASYLTE 240
Query: 241 MLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMS 300
MLNLAE+WGW G+ T T L KLL +MIDESDP+LPFGYIKLDE+ASRAK+NSP L+TMMS
Sbjct: 241 MLNLAEQWGWTGNDTETHLGKLLKQMIDESDPKLPFGYIKLDEVASRAKINSPPLRTMMS 300
Query: 301 AVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQGC 338
A+ KEGY SRSHIASNAIKTNCPM CIRIAKELQ C
Sbjct: 301 ALNKEGYAVSRSHIASNAIKTNCPMAVCIRIAKELQQC 338
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564102|ref|XP_002523049.1| N(2),N(2)-dimethylguanosine tRNA methyltransferase, putative [Ricinus communis] gi|223537732|gb|EEF39353.1| N(2),N(2)-dimethylguanosine tRNA methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 253/340 (74%), Positives = 293/340 (86%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
MCGCGIRS RYL EA+ADFV+AND ND +R VI+GNLK + RG GDE++WVVTHFDANRV
Sbjct: 82 MCGCGIRSCRYLIEAEADFVLANDANDEYRGVIVGNLKQVGRGFGDERKWVVTHFDANRV 141
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120
L+ECYL+R+FFDLIDIDSFGSDS FLR+ +A+K DGLLYLTSTDGYSSGGHRP+ SLA+
Sbjct: 142 LTECYLQRDFFDLIDIDSFGSDSLFLRSAMSALKLDGLLYLTSTDGYSSGGHRPHCSLAA 201
Query: 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALP 180
YGAYI PMP SNE+GLRMLIGGAVREAS GYHV+PLFSYYSYHGPVFRVMLRV+R
Sbjct: 202 YGAYIRPMPCSNEVGLRMLIGGAVREASLLGYHVTPLFSYYSYHGPVFRVMLRVNRGKEH 261
Query: 181 DNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATHITK 240
+NRHYGFI+YCN CGN++A+SWEELG SC + L VSGPLWTGPLHDAT IT+
Sbjct: 262 ENRHYGFITYCNQCGNTRAFSWEELGHFSCSFCSNEDYRPLTVSGPLWTGPLHDATFITE 321
Query: 241 MLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMS 300
MLNLAE+WGWVG+ G DL+KLL +M+DESDPRLPFG+IKLDEMASRAK+NSP +KT+M+
Sbjct: 322 MLNLAEQWGWVGNDVGADLDKLLKQMLDESDPRLPFGFIKLDEMASRAKINSPPIKTLMN 381
Query: 301 AVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQGCQK 340
+ +EGY ASRSHIASNAIKT+CPM IR+AKELQG +K
Sbjct: 382 TLLQEGYAASRSHIASNAIKTDCPMPVFIRLAKELQGAKK 421
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224126557|ref|XP_002319867.1| predicted protein [Populus trichocarpa] gi|222858243|gb|EEE95790.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/339 (75%), Positives = 299/339 (88%), Gaps = 1/339 (0%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
+CGCGIRSLRYL EAKADFV+AND ND HRRVIL NLK ++RG GDE++WVVTH DANRV
Sbjct: 85 LCGCGIRSLRYLMEAKADFVLANDANDEHRRVILENLKRVDRGFGDERKWVVTHLDANRV 144
Query: 61 LSECYLKREFFDLIDIDSFGSDSS-FLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
LSECYL+++FFDLIDIDSFGSD S FLR+ N + DGLLY+TSTDG+SSGGH P++SLA
Sbjct: 145 LSECYLQKDFFDLIDIDSFGSDISLFLRSAMNTLSFDGLLYVTSTDGHSSGGHHPDHSLA 204
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKAL 179
+YGAY+ PMPYSNE+GLRMLIGGAVREAS GY+++PLFSYYSYHGPVFRVMLRV+R L
Sbjct: 205 AYGAYVRPMPYSNEVGLRMLIGGAVREASVLGYYITPLFSYYSYHGPVFRVMLRVNRGKL 264
Query: 180 PDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATHIT 239
+NRHYGFI+YCN+CGNSQ +SW ELGQ+SC CS + GS SLV+SGPLWTGPLH A +I+
Sbjct: 265 LENRHYGFITYCNNCGNSQEFSWAELGQISCSCSGSHGSRSLVISGPLWTGPLHSAAYIS 324
Query: 240 KMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMM 299
KM+NLAE+WGW+G+G TDLEKLL +M+DESDPRL GYIK+DE+ASRAK+NSP L+TMM
Sbjct: 325 KMINLAEEWGWIGNGAETDLEKLLKQMLDESDPRLKSGYIKMDEVASRAKINSPPLRTMM 384
Query: 300 SAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQGC 338
SA+QKEGY SRSHIASNAIKT+CPM CIRI+KELQG
Sbjct: 385 SAMQKEGYATSRSHIASNAIKTDCPMSVCIRISKELQGV 423
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816958|ref|XP_002876362.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297322200|gb|EFH52621.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust.
Identities = 243/334 (72%), Positives = 281/334 (84%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
MCGCGIRSLRYL EA ADFVMAND NDA+RRVI NL +ERG GDE+RWVVTH AN+
Sbjct: 94 MCGCGIRSLRYLVEADADFVMANDANDANRRVITDNLSKVERGVGDERRWVVTHMLANKA 153
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120
+ E Y+ +FFD+IDIDSFGSDSSFLR FNA++ GLLYLTSTDGYSSGGHRP NSLA+
Sbjct: 154 MIERYMVADFFDMIDIDSFGSDSSFLRDAFNALRLGGLLYLTSTDGYSSGGHRPYNSLAA 213
Query: 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALP 180
YGA+I PMP+ NEIGLRMLIGGAVREA+ GYHV PLFSYYSYHGPVFRVMLRVHR L
Sbjct: 214 YGAFIRPMPFGNEIGLRMLIGGAVREAALLGYHVMPLFSYYSYHGPVFRVMLRVHRGKLH 273
Query: 181 DNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATHITK 240
++R+YGF+++CN CG+S W+ELG M CPCS+T SSSLVVSGP+W GPLHDA+++T+
Sbjct: 274 EDRNYGFVTHCNLCGHSHTLRWDELGLMGCPCSDTKASSSLVVSGPMWLGPLHDASYVTE 333
Query: 241 MLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMS 300
ML LA++WGWV +GTG DLEKLLS MI+ESDPRLP GY K+DEMASRAKMNSP LK MMS
Sbjct: 334 MLELAKEWGWVSEGTGMDLEKLLSIMIEESDPRLPPGYTKMDEMASRAKMNSPPLKKMMS 393
Query: 301 AVQKEGYVASRSHIASNAIKTNCPMVACIRIAKE 334
A+ KEGY ASRSHI NA+KT+CPM +RIAK+
Sbjct: 394 ALVKEGYAASRSHIIPNALKTDCPMSHFVRIAKD 427
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228894|ref|NP_191192.1| N2,N2-dimethylguanosine tRNA methyltransferase [Arabidopsis thaliana] gi|7572931|emb|CAB87432.1| N2, N2-dimethylguanosine tRNA methyltransferases-like protein [Arabidopsis thaliana] gi|332645989|gb|AEE79510.1| N2,N2-dimethylguanosine tRNA methyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/334 (72%), Positives = 283/334 (84%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
MCGCGIRSLRYL EA+ADFVMAND ND +RRVI NL +ERG+GDE+RWVVTH AN+
Sbjct: 96 MCGCGIRSLRYLVEAEADFVMANDANDDNRRVITDNLSKVERGTGDERRWVVTHMLANKA 155
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120
+ E Y+ +FFD+IDIDSFGSDSSFLR FNA++ GLLYLTSTDGYSSGGHRP NSLA+
Sbjct: 156 MIERYMVADFFDMIDIDSFGSDSSFLRDAFNALRLGGLLYLTSTDGYSSGGHRPYNSLAA 215
Query: 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALP 180
YGA+I PMP+ NEIGLRMLIGGAVREA+ GYHV+PLFSYYSYHGPVFRVMLRVHR L
Sbjct: 216 YGAFIRPMPFGNEIGLRMLIGGAVREAALLGYHVTPLFSYYSYHGPVFRVMLRVHRGKLH 275
Query: 181 DNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATHITK 240
++R+YGF+++CN CG+S ++ELG M CPCS+T SSSLVVSGP+W GPLHDA+++T+
Sbjct: 276 EDRNYGFVTHCNLCGHSHTLRFDELGLMGCPCSDTKASSSLVVSGPMWLGPLHDASYVTE 335
Query: 241 MLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMS 300
ML LA++WGWV +GTG DL+KLLS MI+ESDPRLP GY K+DEMASRAKMNSP LK MMS
Sbjct: 336 MLELAKEWGWVSEGTGMDLDKLLSIMIEESDPRLPPGYTKMDEMASRAKMNSPPLKKMMS 395
Query: 301 AVQKEGYVASRSHIASNAIKTNCPMVACIRIAKE 334
A+ KEGY ASRSHI NA+KT+CPM +RIAKE
Sbjct: 396 ALVKEGYAASRSHIIPNALKTDCPMSHFVRIAKE 429
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457478|ref|XP_004146475.1| PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 232/338 (68%), Positives = 280/338 (82%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
+CGCGIRSLRYL E++ADFV+AND ND +RRVI+ NL + GD +RW+VT+ DANRV
Sbjct: 96 LCGCGIRSLRYLVESEADFVLANDANDENRRVIVKNLSRVAENIGDNRRWLVTNCDANRV 155
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120
++E YLK++FFD ID+DSFGSDSSFLR NA+K DGLLY+TSTDG+SSGGHRP+ SLA+
Sbjct: 156 MTEFYLKKDFFDFIDVDSFGSDSSFLRPAINALKLDGLLYVTSTDGFSSGGHRPSQSLAA 215
Query: 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALP 180
YGAY+ PMP+SNEIGLRMLIGG REAS G++ +PLFSYYSYHGPVFRVMLR++R +
Sbjct: 216 YGAYVRPMPFSNEIGLRMLIGGVAREASVLGFYATPLFSYYSYHGPVFRVMLRINRGRIH 275
Query: 181 DNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATHITK 240
NRHYGF+SYC CGNSQA+SW ELGQMSCPC+++ S SLVVSGPLW GPLH A +I
Sbjct: 276 KNRHYGFVSYCEKCGNSQAFSWSELGQMSCPCNDSRVSESLVVSGPLWIGPLHSADYIED 335
Query: 241 MLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMS 300
+L LA++W W+G+G G DLEKLL +M+DESD +LP GYIK+DE+ASRAK+NSP L TMMS
Sbjct: 336 ILTLAKQWEWIGNGQGKDLEKLLRQMVDESDSKLPVGYIKMDEVASRAKVNSPPLSTMMS 395
Query: 301 AVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQGC 338
+ K GY ASRSHIASNAIKTNCPM CIRIA+ + C
Sbjct: 396 EMIKAGYAASRSHIASNAIKTNCPMAECIRIAQLQRNC 433
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449491708|ref|XP_004158980.1| PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 232/338 (68%), Positives = 280/338 (82%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
+CGCGIRSLRYL E++ADFV+AND ND +RRVI+ NL + GD +RW+VT+ DANRV
Sbjct: 96 LCGCGIRSLRYLVESEADFVLANDANDENRRVIVKNLSRVAENIGDNRRWLVTNCDANRV 155
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120
++E YLK++FFD ID+DSFGSDSSFLR NA+K DGLLY+TSTDG+SSGGHRP+ SLA+
Sbjct: 156 MTEFYLKKDFFDFIDVDSFGSDSSFLRPAINALKLDGLLYVTSTDGFSSGGHRPSQSLAA 215
Query: 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALP 180
YGAY+ PMP+SNEIGLRMLIGG REAS G++ +PLFSYYSYHGPVFRVMLR++R +
Sbjct: 216 YGAYVRPMPFSNEIGLRMLIGGVAREASVLGFYATPLFSYYSYHGPVFRVMLRINRGRIH 275
Query: 181 DNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATHITK 240
NRHYGF+SYC CGNSQA+SW ELGQMSCPC+++ S SLVVSGPLW GPLH A +I
Sbjct: 276 KNRHYGFVSYCEKCGNSQAFSWSELGQMSCPCNDSRVSESLVVSGPLWIGPLHSADYIED 335
Query: 241 MLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMS 300
+L LA++W W+G+G G DLEKLL +M+DESD +LP GYIK+DE+ASRAK+NSP L TMMS
Sbjct: 336 ILTLAKQWEWIGNGQGKDLEKLLRQMVDESDSKLPVGYIKMDEVASRAKVNSPPLSTMMS 395
Query: 301 AVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQGC 338
+ K GY ASRSHIASNAIKTNCPM CIRIA+ + C
Sbjct: 396 EMIKAGYAASRSHIASNAIKTNCPMAECIRIAQLQRNC 433
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518704|ref|XP_003528018.1| PREDICTED: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 223/339 (65%), Positives = 276/339 (81%), Gaps = 2/339 (0%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
+CGCGIRSLRYLAEA+ADFV ANDGN+ + I+ NL + + +E RWVVTH +ANRV
Sbjct: 92 LCGCGIRSLRYLAEAEADFVAANDGNEDYGSTIVENLMRVS--AEEEGRWVVTHLEANRV 149
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120
+ + YL++ FFD ID+DSFGSDSSFLR+ +K GLLY+TSTDG+SSGGHRP++SLA+
Sbjct: 150 MMDYYLQKSFFDFIDVDSFGSDSSFLRSAICTLKLGGLLYVTSTDGFSSGGHRPHHSLAA 209
Query: 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALP 180
YGAY+ PMPYSNEIGLRMLIGG REA+ GYH++PLFSYY++HGPVFRV+LR++R +
Sbjct: 210 YGAYVRPMPYSNEIGLRMLIGGVAREAALLGYHITPLFSYYAFHGPVFRVLLRLNRGKIH 269
Query: 181 DNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATHITK 240
D+RHYG+I YC+ CGNS +SW+ LGQ+SC CS S+SLVVSGPLWTGPLHDA ++T
Sbjct: 270 DSRHYGYIGYCHQCGNSHEFSWDRLGQISCSCSTPKVSNSLVVSGPLWTGPLHDAAYLTN 329
Query: 241 MLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMS 300
MLNLA++W W+ D LEKL+ M+DESDP+LPFGYIKLDEMASRAK+NSP LK +MS
Sbjct: 330 MLNLAKQWKWIVDDGKDSLEKLIKLMVDESDPKLPFGYIKLDEMASRAKINSPPLKALMS 389
Query: 301 AVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQGCQ 339
A+ ++GY ASRSHI +NAIKTNCPM CI+IAKEL Q
Sbjct: 390 AMHQKGYAASRSHIETNAIKTNCPMTECIKIAKELLQLQ 428
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357129459|ref|XP_003566379.1| PREDICTED: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 197/338 (58%), Positives = 261/338 (77%), Gaps = 2/338 (0%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGD-EKRWVVTHFDANR 59
MCGCGIR+LRYLA+A ADFV AND +DA R V++GNL E D ++RWVV+H DA R
Sbjct: 104 MCGCGIRALRYLAQAGADFVWANDASDALRPVVVGNLSRFEPEPLDGQRRWVVSHLDATR 163
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
+L+E YL+RE+FD+ID+DSFGS++ ++R F A+K GLLYLTSTD S+ G+ SL+
Sbjct: 164 LLAERYLRREYFDVIDVDSFGSEAEYIRAAFLALKIGGLLYLTSTDWRSARGYGGKCSLS 223
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKAL 179
SYGAY+ P+PY NEIGLRML+GGA REA+ G+H++P+FSYY+YHGP+FR M+++
Sbjct: 224 SYGAYVRPVPYPNEIGLRMLLGGAAREAAMLGFHITPVFSYYAYHGPIFRAMIQLRHGKE 283
Query: 180 PDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATHIT 239
+YGFI +C CG +Q + + ELGQ+SC C++ ++S+ V GPLWTGPLHDA+ IT
Sbjct: 284 DGISNYGFICHCKSCGQTQTFGFHELGQISCRCADRTDATSITVVGPLWTGPLHDASSIT 343
Query: 240 KMLNLAEKWGWV-GDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTM 298
+MLNLA +WGW G G LEKLL MIDESD RLP GYI+LDE+ASRAK+NSP L T+
Sbjct: 344 EMLNLAVEWGWAYTTGNGVTLEKLLVTMIDESDLRLPPGYIRLDEIASRAKVNSPPLGTL 403
Query: 299 MSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQ 336
++++QKEGY A RSHI +NAIKTNCP+ +CI +A+E++
Sbjct: 404 INSLQKEGYAACRSHIGANAIKTNCPITSCIEVAREIR 441
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 341 | ||||||
| TAIR|locus:2078431 | 433 | AT3G56330 [Arabidopsis thalian | 0.979 | 0.771 | 0.673 | 9.2e-123 | |
| POMBASE|SPBC25D12.05 | 548 | trm1 "tRNA (guanine-N2-)-methy | 0.885 | 0.551 | 0.289 | 2.3e-19 | |
| CGD|CAL0003366 | 556 | TRM1 [Candida albicans (taxid: | 0.906 | 0.555 | 0.250 | 9.3e-12 | |
| ZFIN|ZDB-GENE-060810-40 | 672 | trmt1 "tRNA methyltransferase | 0.917 | 0.465 | 0.230 | 1.7e-11 | |
| WB|WBGene00006613 | 526 | trm-1 [Caenorhabditis elegans | 0.914 | 0.593 | 0.263 | 5.5e-11 | |
| UNIPROTKB|F6R277 | 662 | TRMT1 "Uncharacterized protein | 0.914 | 0.471 | 0.235 | 1.4e-10 | |
| FB|FBgn0032430 | 578 | CG6388 [Drosophila melanogaste | 0.290 | 0.171 | 0.300 | 1.4e-10 | |
| UNIPROTKB|F1SD98 | 542 | TRMT1 "Uncharacterized protein | 0.671 | 0.422 | 0.263 | 3.6e-10 | |
| UNIPROTKB|F1MAP8 | 625 | Trmt1 "Protein Trmt1" [Rattus | 0.914 | 0.499 | 0.235 | 4.6e-10 | |
| MGI|MGI:1289155 | 663 | Trmt1 "tRNA methyltransferase | 0.920 | 0.473 | 0.236 | 6.6e-10 |
| TAIR|locus:2078431 AT3G56330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
Identities = 225/334 (67%), Positives = 266/334 (79%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
MCGCGIRSLRYL EA+ADFVMAND ND +RRVI NL +ERG+GDE+RWVVTH AN+
Sbjct: 96 MCGCGIRSLRYLVEAEADFVMANDANDDNRRVITDNLSKVERGTGDERRWVVTHMLANKA 155
Query: 61 LSECYLKREXXXXXXXXXXXXXXXXXRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120
+ E Y+ + R FNA++ GLLYLTSTDGYSSGGHRP NSLA+
Sbjct: 156 MIERYMVADFFDMIDIDSFGSDSSFLRDAFNALRLGGLLYLTSTDGYSSGGHRPYNSLAA 215
Query: 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALP 180
YGA+I PMP+ NEIGLRMLIGGAVREA+ GYHV+PLFSYYSYHGPVFRVMLRVHR L
Sbjct: 216 YGAFIRPMPFGNEIGLRMLIGGAVREAALLGYHVTPLFSYYSYHGPVFRVMLRVHRGKLH 275
Query: 181 DNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATHITK 240
++R+YGF+++CN CG+S ++ELG M CPCS+T SSSLVVSGP+W GPLHDA+++T+
Sbjct: 276 EDRNYGFVTHCNLCGHSHTLRFDELGLMGCPCSDTKASSSLVVSGPMWLGPLHDASYVTE 335
Query: 241 MLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMS 300
ML LA++WGWV +GTG DL+KLLS MI+ESDPRLP GY K+DEMASRAKMNSP LK MMS
Sbjct: 336 MLELAKEWGWVSEGTGMDLDKLLSIMIEESDPRLPPGYTKMDEMASRAKMNSPPLKKMMS 395
Query: 301 AVQKEGYVASRSHIASNAIKTNCPMVACIRIAKE 334
A+ KEGY ASRSHI NA+KT+CPM +RIAKE
Sbjct: 396 ALVKEGYAASRSHIIPNALKTDCPMSHFVRIAKE 429
|
|
| POMBASE|SPBC25D12.05 trm1 "tRNA (guanine-N2-)-methyltransferase" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 239 (89.2 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 100/346 (28%), Positives = 153/346 (44%)
Query: 5 GIRSLRYLAEA-KADFVMANDGNDAHRRVILGN-LKSIERGSG--DEKRWVVTHF-DANR 59
G+RS+RY E ++AND +L N +K+IE+ + V+ + DAN
Sbjct: 135 GLRSIRYAKELPNVKRILAND--------LLENAVKTIEKNVNYNNVSDIVIPNKGDANA 186
Query: 60 VLSECYLKREXXXXXXXXXXXXXXXXXRTVFNAVKRDGLLYLTSTDGYSSGGHR-PNNSL 118
V+ ++ + +V +DGLL +T TD G+ P
Sbjct: 187 VM---HMNKFHYDVIDLDPYGSAAPFLDAAVQSVSKDGLLCITCTDSAVLAGNAYPEKCF 243
Query: 119 ASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSY-YSYHGPVFRVMLRVHRK 177
++YG L + +E +R L+ A+ G + PL S ++ FRV +++ K
Sbjct: 244 SNYGGSSLRSNFCHEQAVRHLLYAIAASAAKYGRAIKPLLSLSIDFY---FRVFVQIKAK 300
Query: 178 -ALPDN-RHYGFISYCNHCGNSQAYSWEELGQMS---CP----CSNTIG---SSSLV--- 222
L N + + Y HC +++ + LG+ S P SN G S++
Sbjct: 301 PVLVKNLQSQSLLIY--HCSGCGSFAEQPLGKTSPGRLPGTTKFSNASGPPVSANCEHCG 358
Query: 223 ----VSGPLWTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGY 278
V GPLW GPLHDA + KM +AE GT + +L+ + DE P +PF Y
Sbjct: 359 YVHHVGGPLWGGPLHDAEFLKKMRAIAEDLDPEVYGTKRRILGMLA-LADEELPDVPF-Y 416
Query: 279 IKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCP 324
L ++ S + SP +SA+ GY S SH SNAIKTN P
Sbjct: 417 FVLSQICSVLRSQSPPQNIFVSALLNAGYRVSGSHAKSNAIKTNAP 462
|
|
| CGD|CAL0003366 TRM1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 87/347 (25%), Positives = 145/347 (41%)
Query: 1 MCGCGIRSLRYLAEA-KADFVMANDG-NDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN 58
+ G+RS RY E +A ++AND +A + + N K++E +K V DA
Sbjct: 109 LAASGLRSCRYGLEIPEAGKIVANDMLAEAVKSI---N-KNVEYNKLTDKV-VANQGDAI 163
Query: 59 RVLSECYLKREXXXXXXXXXXXXXXXXXRTVFNAVKRDGLLYLTSTD-GYSSGGHRPNNS 117
+ + E + ++ DG+L +T TD G +G P
Sbjct: 164 KFMGST---DEKFHIVDLDPYGTAAPFIDSAIQCLEDDGMLLVTCTDAGVLAGSGYPEKC 220
Query: 118 LASYGAYILPMPYSN-----EIGLRMLIGGAVREASAQGYHVSPLFSY-YSYHGPVFRVM 171
A YG Y N E+G+R+++ A+ + P+ S Y+ FRV
Sbjct: 221 FALYGGNNFGNAYVNGESNHEVGIRLILNLIASTAAKYKKTIEPMLSLSIDYY---FRVF 277
Query: 172 LRVHRKALPDNRHYG--FISY-CNHCG----------NSQAYSWEEL-GQMSCPCSNTIG 217
++V + H ++Y CN CG N+ + + +L G +S C
Sbjct: 278 VKVKTSPINVKNHASETMLTYGCNGCGHKIVQPLGMKNNTKFQYPKLQGPISSNCQYC-- 335
Query: 218 SSSLVVSGPLWTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFG 277
+S V+GP++ G LH+ I K+L + E T ++ +L+ +E D PF
Sbjct: 336 GTSYNVAGPMYAGNLHNREFIDKVLKINESSDKEIYVTNERIKGMLTLASNELDDA-PF- 393
Query: 278 YIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCP 324
+ L+++ S K S++ AV GY S +H N +KTN P
Sbjct: 394 FFNLNQLCSIFKSPPISIEQYTKAVGNLGYKVSLTHAKKNCVKTNLP 440
|
|
| ZFIN|ZDB-GENE-060810-40 trmt1 "tRNA methyltransferase 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 185 (70.2 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 79/342 (23%), Positives = 138/342 (40%)
Query: 1 MCGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ G+RS+R+ E + AND + +I N + + + DA+
Sbjct: 203 LAASGLRSVRFALEVPGLKSITANDYSAKAAALIARNAQH----NNVTHILQASQRDASM 258
Query: 60 VLSECYLKREXXXXXXXXXXXXXXXXXRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
V+ E ++E + AV GLL +T TD G+ +
Sbjct: 259 VMYEARGRKERYDVIDLDPYGSPSPFLDSAVQAVSEGGLLCITCTDMAVMAGNSGETCYS 318
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSY-YSYHGPVFRVMLRVHRKA 178
YG+ + Y +E+ LR+++ + A+ ++ PL S ++ VF V ++ +
Sbjct: 319 KYGSVSIKSKYCHEMALRIILHSLDQRAAVYQRYIEPLLSVSVDFYIRVF-VRVKTGQVV 377
Query: 179 LPDNRHYGFISY-CNHCGNSQAYSWEELGQM---------SCPCSNTIGSSSL------V 222
+ ++ + Y C CG A+ + +G+ S +G +
Sbjct: 378 VKNSASKQALVYNCVGCG---AFHLQRMGKRINQGKHMKYSAATGPPVGPNCEHCGQRHQ 434
Query: 223 VSGPLWTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLD 282
+ GP W PLHD + K+L A T +E +LS M+ E +P Y LD
Sbjct: 435 LGGPAWAEPLHDINFVQKVLG-AVSGNPTRFRTSKRIEGMLS-MVTEELQDVPL-YYTLD 491
Query: 283 EMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCP 324
++S ++P + SA+ GY S SH NA+KT+ P
Sbjct: 492 HLSSTVHRSTPPMMQFRSALLHAGYRVSFSHACKNAVKTDAP 533
|
|
| WB|WBGene00006613 trm-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 179 (68.1 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 90/342 (26%), Positives = 141/342 (41%)
Query: 5 GIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF-DANRVLS 62
G+R+LR+ E F+MAND +D I N+K +G E V HF DA +
Sbjct: 102 GLRALRFSKEVPNVGFIMANDFSDNAVASIQENVKL----NGVEDI-VEAHFGDAVMTMM 156
Query: 63 ECYLKREXXXXXXXXXXXXXXXXXRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYG 122
E + + V G+L +T TD G+ P Y
Sbjct: 157 EHRGIDKRFHAVDLDPYGTASTFLDSAVQCVADRGILMVTCTDMAVLCGNTPEACYNKYD 216
Query: 123 AYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSY-YSYHGPVF-RVMLRVHRKALP 180
A M +E+GLR+L+ A+ ++ PL S ++ VF RV + A
Sbjct: 217 AVTTRMKCCHEVGLRILLRAIDSAANRYTRYIEPLVSISVDFYVRVFVRVHTGAFQ-AKQ 275
Query: 181 DNRHYGFISYCNHC-------------GNSQA-YSWEELGQ-MSCPCSNTIGSS-SLVVS 224
G + C+ C GN Q+ YS + +S P + I L
Sbjct: 276 SGTKVGTVLVCSGCHSMEPLVLLKRGEGNQQSKYSIPTVRHSISGPGNRCIHCLLPLHQI 335
Query: 225 GPLWTGPLHDATHITKMLNLAEKWGWVGD-GTGTDLEKLLSRMIDESDPRLPFGYIKLDE 283
GP++ P+H +T +L + GT L+ +L+ + +E D L Y + ++
Sbjct: 336 GPIYLAPIHSKPFVTSLLERLKSTPEAERLGTHGRLQGVLTMVNEELDDVL---YYEHNQ 392
Query: 284 MASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPM 325
MA+ K++ P +++ SA+ G+ S SH AIKTN PM
Sbjct: 393 MANVVKVSVPKSQSVRSAILNAGFKVSGSHCNPRAIKTNAPM 434
|
|
| UNIPROTKB|F6R277 TRMT1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 81/344 (23%), Positives = 136/344 (39%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVV--THFDAN 58
+ G+RS+R+ E + + NDA R + ++++ +E +V + DA
Sbjct: 162 LAASGLRSIRFAREVPG--LRSVVANDASARAVDLMRRNVQL---NEVAHLVQPSQADAR 216
Query: 59 RVLSECYLKREXXXXXXXXXXXXXXXXXRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSL 118
++ + E AV GLL +T TD G+
Sbjct: 217 MLMYQHQKASERFDVIDLDPYGSPASFLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCY 276
Query: 119 ASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYS-YHGPVFRVMLRVHRK 177
+ YGA L +E+ LR ++ A+ V PL S + ++ VF + K
Sbjct: 277 SKYGAMALKSRACHEMALRTVLHSLDLRANCYQRFVVPLLSISADFYVRVFVRVFTGQAK 336
Query: 178 ALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLV--------------- 222
+ C CG A+ + LG+ S + S+
Sbjct: 337 VKASASKQALVFQCVGCG---AFHLQRLGKASAASGGRLKFSAACGPPVAPECEHCGQRH 393
Query: 223 -VSGPLWTGPLHDATHITKMLN-LAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIK 280
+ GP+W PLHD + ++L ++ G T + +LS +I E P +P Y
Sbjct: 394 QLGGPMWAEPLHDLEFVGRVLEAVSANPGRFH--TAERIRGVLS-VITEELPDVPL-YYT 449
Query: 281 LDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCP 324
LD+++S N+PSL + SA+ G+ S SH NA+KT+ P
Sbjct: 450 LDQLSSTIHCNTPSLLQLRSALLHAGFRVSLSHACKNAVKTDAP 493
|
|
| FB|FBgn0032430 CG6388 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 119 (46.9 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 31/103 (30%), Positives = 51/103 (49%)
Query: 223 VSGPLWTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLD 282
+ GP+W+ P+H+ + +L ++ GT + +LS M+ E +P Y D
Sbjct: 344 LGGPIWSAPIHNPEFVQDLLTAVQETTLQSLGTQRRIVGVLS-MVQEELQDVPLYYTP-D 401
Query: 283 EMASRAKMNS-PSLKTMMSAVQKEGYVASRSHIASNAIKTNCP 324
++ K+ P LK SA+ GY S SH + N++KTN P
Sbjct: 402 KLCCVLKLEIVPMLK-FRSAILHAGYRVSYSHASKNSLKTNAP 443
|
|
| UNIPROTKB|F1SD98 TRMT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 172 (65.6 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 67/254 (26%), Positives = 107/254 (42%)
Query: 92 AVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQG 151
AV GLL +T TD G+ + YGA L +E+ LR+++ A+
Sbjct: 222 AVSEGGLLCVTCTDMAVLAGNSGETCYSKYGAMALKSRACHEMALRIVLHSLDLRANCYQ 281
Query: 152 YHVSPLFSYYS-YHGPVFRVMLRVHRKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSC 210
V PL S + ++ VF + K + C CG A+ + LG+ S
Sbjct: 282 RFVVPLLSISADFYVRVFVRVFTGQAKVKASASKQALVFQCVGCG---AFHLQRLGKASG 338
Query: 211 PCSNTIGSSSLV----------------VSGPLWTGPLHDATHITKMLN-LAEKWGWVGD 253
+ S+ + GP+W PLHD + ++L ++ G
Sbjct: 339 AAGGRVKFSAACGPPVAPECEHCGQRHQLGGPMWAEPLHDLDFVGQVLEAVSANPGRFH- 397
Query: 254 GTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSH 313
T + +LS +I E P +P Y LD+++S ++PSL + SA+ G+ S SH
Sbjct: 398 -TAERIRGVLS-VITEELPDVPL-YYTLDQLSSTIHCSTPSLLQLRSALLHAGFRVSLSH 454
Query: 314 IASNAIKTNCPMVA 327
NA+KT+ P A
Sbjct: 455 ACKNAVKTDAPSSA 468
|
|
| UNIPROTKB|F1MAP8 Trmt1 "Protein Trmt1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 172 (65.6 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 80/340 (23%), Positives = 135/340 (39%)
Query: 1 MCGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ G+RS+R+ E V+AND + R V L + +++E +G DA
Sbjct: 121 LAASGLRSIRFALEVPGLQSVVANDASA--RAVELMH-RNVEL-NGVAHLVQPNQADARM 176
Query: 60 VLSECYLKREXXXXXXXXXXXXXXXXXRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
++ + E AV GLL +T TD G+ +
Sbjct: 177 LMYQHQKASERFDVIDLDPYGSPAPFLDAAVQAVSDGGLLCVTCTDMAVLAGNSGETCYS 236
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYS-YHGPVFRVMLRVHRKA 178
YGA L +E+ LR+++ A+ ++ PL S + ++ VF + K
Sbjct: 237 KYGAMALKSRACHEMALRIVLHSLDLHANCYQRYIVPLLSISADFYVRVFVRVFTGQAKV 296
Query: 179 LPDNRHYGFISYCNHCGNSQAYSWEELGQ----------MSCPCSNTIG------SSSLV 222
+ C CG A+ + LG+ S C +
Sbjct: 297 KSSASKQALVFQCVGCG---AFYLQRLGKASGDPGGRVKFSAACGPPVSPECEHCGQRHQ 353
Query: 223 VSGPLWTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLD 282
+ GP+W P+HD + ++L A T T ++ +LS ++ E P +P Y LD
Sbjct: 354 LGGPMWAEPIHDLDFVGQVLE-AVTTNPGRFHTSTRIQGVLS-VVTEELPDVPL-YYTLD 410
Query: 283 EMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTN 322
+++S N+P L + SA+ G+ S SH NA+KT+
Sbjct: 411 QLSSTVHCNTPRLLQLRSALLHAGFRVSLSHACKNAVKTD 450
|
|
| MGI|MGI:1289155 Trmt1 "tRNA methyltransferase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 171 (65.3 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 81/342 (23%), Positives = 137/342 (40%)
Query: 1 MCGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ G+RS+R+ E V+AND + R V L + +++E +G DA
Sbjct: 159 LAASGLRSIRFALEVPGLQSVVANDASA--RAVELMH-RNVEL-NGVAHLVQPNQADARM 214
Query: 60 VLSECYLKREXXXXXXXXXXXXXXXXXRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
++ + E AV GLL +T TD G+ +
Sbjct: 215 LMYQHQKAPERFDVIDLDPYGSPAPFLDAAVQAVSDGGLLCVTCTDMAVLAGNSGETCYS 274
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYS-YHGPVFRVMLRVHRKA 178
YGA L +E+ LR+++ A+ ++ PL S + ++ VF + K
Sbjct: 275 KYGAMALKSRACHEMALRIVLHSLDLHANCYQRYIVPLLSISADFYIRVFVRVFTGQAKV 334
Query: 179 LPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLV---------------- 222
+ C CG A+ + LG+ S I S+
Sbjct: 335 KSSASKQALVFQCVGCG---AFYLQRLGKASGDPGGRIKFSAACGPPVTPECEHCGQRHQ 391
Query: 223 VSGPLWTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLD 282
+ GP+W P+HD + ++L+ A T ++ +LS ++ E P +P Y LD
Sbjct: 392 LGGPMWAEPIHDLDFVGRVLD-AVTTNPGRFHTSMRIQGVLS-VVTEELPDVPL-YYTLD 448
Query: 283 EMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCP 324
+++S N+P L + SA+ G+ S SH NA+KT+ P
Sbjct: 449 QLSSTIHCNTPRLLQLRSALLHAGFRVSLSHACKNAVKTDAP 490
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| B6YUU9 | TRM1_THEON | 2, ., 1, ., 1, ., 2, 1, 6 | 0.3054 | 0.9149 | 0.8275 | yes | no |
| A3CW75 | TRM1_METMJ | 2, ., 1, ., 1, ., 2, 1, 6 | 0.3036 | 0.8826 | 0.8113 | yes | no |
| C5A6N2 | TRM1_THEGJ | 2, ., 1, ., 1, ., 2, 1, 6 | 0.3002 | 0.9002 | 0.8121 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 341 | |||
| PRK04338 | 382 | PRK04338, PRK04338, N(2),N(2)-dimethylguanosine tR | 3e-67 | |
| COG1867 | 380 | COG1867, TRM1, N2,N2-dimethylguanosine tRNA methyl | 3e-66 | |
| pfam02005 | 375 | pfam02005, TRM, N2,N2-dimethylguanosine tRNA methy | 4e-61 | |
| TIGR00308 | 374 | TIGR00308, TRM1, tRNA(guanine-26,N2-N2) methyltran | 3e-49 |
| >gnl|CDD|235286 PRK04338, PRK04338, N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 3e-67
Identities = 111/340 (32%), Positives = 165/340 (48%), Gaps = 25/340 (7%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
+ GIR +RY E + V ND N +I NL+ G +EK V + DAN +
Sbjct: 65 LSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLE--LNGLENEK---VFNKDANAL 119
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120
L E FD++DID FGS + FL + +VKR GLL +T+TD G P + L
Sbjct: 120 LHE----ERKFDVVDIDPFGSPAPFLDSAIRSVKRGGLLCVTATDTAPLCGAYPKSCLRK 175
Query: 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALP 180
YGA L + +E+GLR+LIG REA+ + PLFS+ + H +RV L+V R A
Sbjct: 176 YGAVPLKTEFYHEMGLRILIGYIAREAAKYDKGLEPLFSHSTDH--YYRVFLKVERGAKK 233
Query: 181 DNR---HYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDATH 237
++ + G++ YC C + P + +GPLW GPLHD
Sbjct: 234 ADKALENLGYVYYCPKCLYREEVE------GLPPEECPVCGGKFGTAGPLWLGPLHDKEF 287
Query: 238 ITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKT 297
+ +ML A K GT KLL + +ES P + L E+A + K+++P +
Sbjct: 288 VEEMLEEAAKE----LGTSKKALKLLKTIEEESKLDTP-TFYDLHELAKKLKVSAPPMDE 342
Query: 298 MMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQG 337
++ A+++ G+ ASR+H + KT+ P K L
Sbjct: 343 ILEALREAGFEASRTHFSPTGFKTDAPYDEIKEAIKSLSS 382
|
Length = 382 |
| >gnl|CDD|224780 COG1867, TRM1, N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 212 bits (543), Expect = 3e-66
Identities = 110/330 (33%), Positives = 159/330 (48%), Gaps = 30/330 (9%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60
+ GIR +RY E V+ ND + +I N++ + V + DAN +
Sbjct: 60 LSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAE-----VINKDANAL 114
Query: 61 LSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLAS 120
L E L R FD+IDID FGS + FL +V+R GLL +T+TD G P
Sbjct: 115 LHE--LHR-AFDVIDIDPFGSPAPFLDAALRSVRRGGLLCVTATDTAPLCGSYPRKCRRK 171
Query: 121 YGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKA-L 179
YGA L + +E+GLR+LIG R A+ + PL S H RV + V R A
Sbjct: 172 YGAVPLKTEFCHEVGLRILIGYVARTAAKYDKAIEPLLSLSIDH--YVRVFVEVRRGARR 229
Query: 180 PDN--RHYGFISYCNHCG---NSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHD 234
D + G+I +C+ CG S E+ CP + ++GPLW GPLHD
Sbjct: 230 ADKLLENLGYIYHCSRCGEIVGSFREVDEK-----CPH----CGGKVHLAGPLWLGPLHD 280
Query: 235 ATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPS 294
I +ML +AE GT KLL ++I + P Y L +AS+ +++P
Sbjct: 281 EEFIEEMLEIAEGLEL---GTKKRALKLL-KLIKKELDISPLFY-DLHRIASKLGLSAPP 335
Query: 295 LKTMMSAVQKEGYVASRSHIASNAIKTNCP 324
L+ ++ A++ GY ASR+H + IKT+ P
Sbjct: 336 LEEVVEALRSAGYEASRTHFSPTGIKTDAP 365
|
Length = 380 |
| >gnl|CDD|216840 pfam02005, TRM, N2,N2-dimethylguanosine tRNA methyltransferase | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 4e-61
Identities = 104/336 (30%), Positives = 156/336 (46%), Gaps = 28/336 (8%)
Query: 3 GCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGN--LKSIERGSGDEKRWVVTHFDANR 59
GIR++R+ E + V AND + +I N L +E V+ DAN
Sbjct: 59 ASGIRAIRFALEVPGVEEVFANDISPKAVELIKENVKLNEVE------NIVVINGDDANM 112
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
++ E FD+ID+D FGS + FL + +VKR GLL +T+TD G P L
Sbjct: 113 LMRE---NHRRFDVIDLDPFGSPAPFLDSAVQSVKRGGLLCVTATDTAVLCGAYPEACLR 169
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKA- 178
YGA L + +E+GLR+L+G R A+ + PL SY H RV ++V R A
Sbjct: 170 KYGAVPLRGEFCHEVGLRILLGFIARYAAKYDKAIEPLLSYSIDH--YVRVFVKVKRGAA 227
Query: 179 LPDN--RHYGFISYCNHCGNSQA-YSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDA 235
D G++ +C+ C N + + C ++GPLW GPLHD
Sbjct: 228 KVDKVIEKLGYVYHCSGCMNREVVTGIAKFKAECPHCGGRFH-----LAGPLWLGPLHDK 282
Query: 236 THITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSL 295
+ +ML +AE + + LL +I E +P Y L ++AS K++ P L
Sbjct: 283 EFVEEMLEIAES---PPEEFSKRILGLLK-LIKEELLDVPLYYD-LHQLASVLKLSVPPL 337
Query: 296 KTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRI 331
+ ++SA+ G+ SR+H IKTN P +
Sbjct: 338 QDVVSALLNAGFEVSRTHANPTGIKTNAPWEVVWEV 373
|
This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria. Length = 375 |
| >gnl|CDD|232913 TIGR00308, TRM1, tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 3e-49
Identities = 103/347 (29%), Positives = 162/347 (46%), Gaps = 36/347 (10%)
Query: 3 GCGIRSLRYLAEAKADF-VMANDGNDAHRRVILGNLK--SIERGSGDEKRWVVTHFDANR 59
GIR++RY E + V AND N I N++ S+E V + DA
Sbjct: 54 ASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENI-------EVPNEDAAN 106
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
VL + F +IDID FG+ + F+ + A GLL +T+TD + G+ P + L
Sbjct: 107 VLRY---RNRKFHVIDIDPFGTPAPFVDSAIQASAERGLLLVTATDTSALCGNYPKSCLR 163
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKAL 179
YGA + +E LR+L+G R A+ + PL S+ H RV ++V R A+
Sbjct: 164 KYGANPVKTESCHESALRLLLGFVKRTAAKYEKALEPLLSHSIDH--YVRVYVKVKRSAI 221
Query: 180 PDNRHYGFISYCNHCGNSQAYSWEELGQMS------CPCSNTIGSSSLVVSGPLWTGPLH 233
++ Y HC S+ + + +S C ++GPL+ GPLH
Sbjct: 222 RADKVMESTGYTYHC--SRCLHNKPVNGISQRKGRCKECGGEYH-----LAGPLYAGPLH 274
Query: 234 DATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSP 293
D I ++L +AE+ + GT + K+LS + +E P GY +AS K++ P
Sbjct: 275 DKEFIEEVLRIAEEKEY---GTRKRVLKMLSLIKNELS--DPPGYYSPHHIASVLKLSVP 329
Query: 294 SLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQGCQK 340
LK +++ ++ G+ ASR+H + IKT+ P A + LQ C
Sbjct: 330 PLKDVVAGLKSLGFEASRTHYQPSGIKTDAPWDAIWEV---LQKCDD 373
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes [Protein synthesis, tRNA and rRNA base modification]. Length = 374 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 341 | |||
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 100.0 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 100.0 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 100.0 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 100.0 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 100.0 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.8 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.76 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.73 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.72 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.68 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.64 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.52 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.44 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.35 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 99.3 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.19 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.03 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.0 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.95 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.95 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.94 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.92 | |
| PLN02476 | 278 | O-methyltransferase | 98.87 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.85 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.81 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.8 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.8 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.8 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.8 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.8 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.8 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.77 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.76 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.75 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.74 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.73 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 98.72 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.71 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.7 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.68 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.68 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.67 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.66 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.65 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.65 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.64 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.64 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.63 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.63 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.62 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.62 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.59 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.59 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.57 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.55 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.54 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.54 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.53 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.52 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.52 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.51 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.5 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.5 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.5 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 98.48 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.48 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.47 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.45 | |
| PLN02823 | 336 | spermine synthase | 98.44 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.44 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.44 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.43 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.41 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.41 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.41 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.38 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.38 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.37 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.35 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.35 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.34 | |
| PLN02366 | 308 | spermidine synthase | 98.34 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.33 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.33 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.31 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.28 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.21 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.17 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.16 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 98.15 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.11 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.11 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.09 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.07 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.05 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.02 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 97.96 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.94 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 97.94 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 97.9 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 97.88 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 97.87 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 97.82 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 97.82 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.81 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.81 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 97.79 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.79 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.79 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 97.75 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 97.74 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.72 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 97.72 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.71 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.71 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 97.68 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.68 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.67 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 97.65 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 97.62 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 97.62 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 97.61 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 97.61 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 97.61 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.6 | |
| PRK04266 | 226 | fibrillarin; Provisional | 97.59 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.56 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.54 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 97.53 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.51 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 97.5 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 97.49 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.47 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.46 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 97.45 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 97.44 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.43 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 97.43 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.39 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 97.39 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 97.29 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 97.29 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 97.29 | |
| COG3286 | 204 | Uncharacterized protein conserved in archaea [Func | 97.28 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 97.28 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 97.27 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.26 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 97.24 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 97.24 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.22 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 97.2 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 97.2 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 97.19 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 97.16 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 97.1 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 97.1 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 97.08 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.08 | |
| PF09840 | 190 | DUF2067: Uncharacterized protein conserved in arch | 97.01 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 97.0 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 96.98 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 96.98 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.96 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 96.96 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 96.88 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.81 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 96.79 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 96.79 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 96.77 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 96.69 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 96.64 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 96.63 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 96.59 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 96.57 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.52 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 96.51 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 96.43 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 96.41 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 96.36 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 96.3 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 96.3 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 96.25 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.16 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 96.08 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 96.08 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 96.03 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 96.03 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.82 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 95.71 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 95.69 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.59 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 95.52 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 95.51 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 95.47 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 95.41 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.15 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 94.98 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 94.9 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 94.86 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 94.81 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 94.79 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 94.78 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.74 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 94.73 | |
| PHA01634 | 156 | hypothetical protein | 94.66 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 94.48 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 94.35 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 94.23 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.12 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 93.99 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.99 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 93.8 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 93.69 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 93.65 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 93.58 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 93.36 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 93.28 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 93.23 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 93.02 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 92.97 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 92.86 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 92.06 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 92.01 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 91.87 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 91.84 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 91.84 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 91.75 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 91.67 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 91.58 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 91.56 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 91.42 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.17 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 91.13 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 90.75 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 90.53 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 89.94 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 89.92 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 89.9 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 89.78 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 89.22 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 89.19 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 89.17 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 89.14 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 88.89 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 88.01 | |
| PF00072 | 112 | Response_reg: Response regulator receiver domain; | 87.98 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 87.84 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 87.66 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 87.6 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 87.1 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 86.85 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 86.76 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 86.7 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 86.57 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 86.53 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 86.27 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 85.79 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 85.54 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 85.34 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 85.12 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 85.06 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 84.52 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 83.95 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 83.82 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 83.76 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 83.68 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 83.63 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 83.58 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 83.2 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 82.93 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 82.81 | |
| PF02082 | 83 | Rrf2: Transcriptional regulator; InterPro: IPR0009 | 82.78 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 82.76 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 82.68 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 82.63 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 82.32 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 80.93 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 80.55 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 80.49 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 80.44 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 80.31 |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-95 Score=694.72 Aligned_cols=316 Identities=33% Similarity=0.523 Sum_probs=287.5
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
|||||+||||||.|.+..+|++||+||+|+++|++|+++|.. .+..+++.|||.+|++.. ..||+|||||||
T Consensus 60 lsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-----~~~~v~n~DAN~lm~~~~---~~fd~IDiDPFG 131 (380)
T COG1867 60 LSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-----EDAEVINKDANALLHELH---RAFDVIDIDPFG 131 (380)
T ss_pred ccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-----ccceeecchHHHHHHhcC---CCccEEecCCCC
Confidence 799999999999998887999999999999999999999944 356677899999999753 589999999999
Q ss_pred CCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEec
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSY 160 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s~ 160 (341)
||+||+|+|++++++||+|+|||||+++|||.+|++|+||||+.|++++++||+|+|+|+++++|.||+|+++|+||+|+
T Consensus 132 SPaPFlDaA~~s~~~~G~l~vTATD~a~L~G~~p~~c~rkY~a~~~~~~~~hE~glR~Lig~vaR~AAkyd~~i~Plls~ 211 (380)
T COG1867 132 SPAPFLDAALRSVRRGGLLCVTATDTAPLCGSYPRKCRRKYGAVPLKTEFCHEVGLRILIGYVARTAAKYDKAIEPLLSL 211 (380)
T ss_pred CCchHHHHHHHHhhcCCEEEEEecccccccCCChHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHhhcccceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEEEeCccc---ccccceeEEEcCCCCCcccccccccCCCCCC-CCCCCCCCcceeeccccccCCCCHH
Q 019408 161 YSYHGPVFRVMLRVHRKALP---DNRHYGFISYCNHCGNSQAYSWEELGQMSCP-CSNTIGSSSLVVSGPLWTGPLHDAT 236 (341)
Q Consensus 161 ~~~~dhy~Rv~vrv~~~~~~---~~~~~g~v~~C~~C~~~~~~~~~~~~~~~C~-c~~~~~~~~~~~~GPlW~G~lhd~~ 236 (341)
+ .||||||||+|.+|+.+ +.+++||++||..|| +..........+|+ |++ .++++||+|+|||||++
T Consensus 212 ~--~dhY~Rvfv~v~rga~~ad~~~e~~g~~~~c~~cg--~~~~~~~~~~~~c~~Cg~-----~~~~~GPlW~GpL~d~~ 282 (380)
T COG1867 212 S--IDHYVRVFVEVRRGARRADKLLENLGYIYHCSRCG--EIVGSFREVDEKCPHCGG-----KVHLAGPLWLGPLHDEE 282 (380)
T ss_pred e--eceEEEEEEEEccCchhHHHHHHhcCcEEEccccc--ceecccccccccCCcccc-----cceeccCcccCcccCHH
Confidence 9 99999999999999887 578999999999999 22221222336795 555 89999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCChhhHHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCC
Q 019408 237 HITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIAS 316 (341)
Q Consensus 237 fv~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~ 316 (341)
|+++|++.+++... ++.+++.++|+.+.+| .+.+|+||++|+|||++|.+.||+++++++|+++||+||||||+|
T Consensus 283 f~e~~l~~~~~~~l---~~~~~~~klL~~i~~E--~~~~p~fydl~~ias~l~~s~p~~~~vv~~L~~~G~~asrTHf~p 357 (380)
T COG1867 283 FIEEMLEIAEGLEL---GTKKRALKLLKLIKKE--LDISPLFYDLHRIASKLGLSAPPLEEVVEALRSAGYEASRTHFSP 357 (380)
T ss_pred HHHHHHHHhhcccc---ccHHHHHHHHHHHHhh--cCCCceEEEHHHHHHHhCCCCCCHHHHHHHHHhcCceeeeeccCC
Confidence 99999998876522 3456799999999977 445579999999999999999999999999999999999999999
Q ss_pred CceecCCCHHHHHHHHHhhhhh
Q 019408 317 NAIKTNCPMVACIRIAKELQGC 338 (341)
Q Consensus 317 ~~iKTdAp~~~i~~i~~~~~~~ 338 (341)
+|||||||+++|+++|+++.+-
T Consensus 358 ~giKTda~~~ev~~vl~~~~~~ 379 (380)
T COG1867 358 TGIKTDAPYEEVEKVLKSLKKD 379 (380)
T ss_pred cccccCCCHHHHHHHHHHhhcC
Confidence 9999999999999999998753
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-95 Score=716.08 Aligned_cols=316 Identities=38% Similarity=0.598 Sum_probs=261.2
Q ss_pred CccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 1 MCGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 1 fagsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
|||||+|||||++| .|+.+|++||+|++|+++|++|+++|+++ .+++++.++||+.+|. ..+++||+||||||
T Consensus 57 laasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~---~~~~~v~~~DAn~ll~---~~~~~fD~IDlDPf 130 (377)
T PF02005_consen 57 LAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE---DERIEVSNMDANVLLY---SRQERFDVIDLDPF 130 (377)
T ss_dssp T-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S---GCCEEEEES-HHHHHC---HSTT-EEEEEE--S
T ss_pred cccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc---CceEEEehhhHHHHhh---hccccCCEEEeCCC
Confidence 79999999999999 88999999999999999999999999995 1268999999999996 23578999999999
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFS 159 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s 159 (341)
|||+||+|+|++++++||+|+||+||+++|||++|++|+||||+.|.+++|+||+|+|+||+.|+|+|++++++|+||+|
T Consensus 131 GSp~pfldsA~~~v~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~glRill~~i~r~Aa~~~~~i~PllS 210 (377)
T PF02005_consen 131 GSPAPFLDSALQAVKDGGLLCVTATDTAVLCGSYPEKCFRKYGAVPRKTPYCHEMGLRILLGAIAREAARYDRGIEPLLS 210 (377)
T ss_dssp S--HHHHHHHHHHEEEEEEEEEEE--HHHHTTSSHHHHHHHHSSB---STTHHHHHHHHHHHHHHHHHHTTTEEEEEEEE
T ss_pred CCccHhHHHHHHHhhcCCEEEEeccccccccCCChhHHHHhcCCcccCCCcccHHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEEEEEeCccc---ccccceeEEEcCCCCCcccccccccCCCCC-CCCCCCCCCcceeeccccccCCCCH
Q 019408 160 YYSYHGPVFRVMLRVHRKALP---DNRHYGFISYCNHCGNSQAYSWEELGQMSC-PCSNTIGSSSLVVSGPLWTGPLHDA 235 (341)
Q Consensus 160 ~~~~~dhy~Rv~vrv~~~~~~---~~~~~g~v~~C~~C~~~~~~~~~~~~~~~C-~c~~~~~~~~~~~~GPlW~G~lhd~ 235 (341)
++ .|||+||||||.+|+.+ ..+++||++||++|+++............| .|++ +++++||||+|||||+
T Consensus 211 ~~--~~hy~Rv~v~v~~~~~~a~~~~~~~G~v~~C~~C~~~~~~~~~~~~~~~c~~cg~-----~~~~~GPlWlGpL~d~ 283 (377)
T PF02005_consen 211 FS--IDHYVRVFVRVKRGASRADESLEKLGYVYYCPSCGYREEVKGLQKLKSKCPECGS-----KLHISGPLWLGPLHDK 283 (377)
T ss_dssp EE--ETTEEEEEEEEEESHHHHHHHHTTEEEEEEETTT--EECCT-GCC--CEETTT-S-----CCCEEEEEE-S-SB-H
T ss_pred eE--eCcEEEEEEEEecCHHHHHHHHHheeEEEECCCccccccccCccccCCcCCCCCC-----ccceecCccccccCCH
Confidence 99 99999999999999776 467899999999998765432221111456 5766 8999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCChhhHHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecC
Q 019408 236 THITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIA 315 (341)
Q Consensus 236 ~fv~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~ 315 (341)
+||++|++.+++.... ....++.++|+.+.+|. ..||+||++++||+.+|+++||+++++++|+++||+||||||+
T Consensus 284 ~fl~~ml~~~~~~~~~--~~~~ri~~lL~~i~eE~--~~~P~yY~l~~ias~lk~~~P~~~~ii~aL~~~Gy~aSrTH~~ 359 (377)
T PF02005_consen 284 EFLEKMLEEAEEMPEL--NTSKRIEKLLETIKEEL--IDPPFYYDLHEIASRLKCNPPPLDKIISALRNAGYRASRTHFD 359 (377)
T ss_dssp HHHHHHHHHHCT-S-T--TTHHHHHHHHHHHHHCH--S-SSS-EEHHHHHHHHT-SC--HHHHHHHHHHTTTTEEEETTC
T ss_pred HHHHHHHhhhhccchh--hhHHHHhhhcchhhhhc--ccceeEEeHHHHHHhcCCCCCCHHHHHHHHhhcceEEEecccC
Confidence 9999999999875432 23567999999999874 4578999999999999999999999999999999999999999
Q ss_pred CCceecCCCHHHHHHHHH
Q 019408 316 SNAIKTNCPMVACIRIAK 333 (341)
Q Consensus 316 ~~~iKTdAp~~~i~~i~~ 333 (341)
|+|||||||+++||||||
T Consensus 360 p~giKTdAP~~~i~dilR 377 (377)
T PF02005_consen 360 PNGIKTDAPIEEIWDILR 377 (377)
T ss_dssp CCEEEESS-HHHHHHHH-
T ss_pred CCcEecCCCHHHHHHHhC
Confidence 999999999999999997
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-91 Score=681.62 Aligned_cols=316 Identities=30% Similarity=0.448 Sum_probs=290.4
Q ss_pred CccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 1 MCGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 1 fagsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
|||||+|||||++| .|+++|++||+|++|++.|++|+++|+++ +++++++||+++|... +.+||+||+|||
T Consensus 52 faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-----~~~v~~~Da~~~l~~~---~~~fDvIdlDPf 123 (374)
T TIGR00308 52 LSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-----NIEVPNEDAANVLRYR---NRKFHVIDIDPF 123 (374)
T ss_pred CCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEchhHHHHHHHh---CCCCCEEEeCCC
Confidence 89999999999998 48999999999999999999999999873 6789999999999764 357999999999
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFS 159 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s 159 (341)
|+|++|+++|++++++||+|+|||||+++|||++|++|+||||+.|++++|+||+|+|+||+.|+|+|++|+++|+||+|
T Consensus 124 Gs~~~fld~al~~~~~~glL~vTaTD~~~L~G~~~~~~~rkYga~~~~~~~~~E~glRiLlg~i~r~Aa~~~~~i~Pl~S 203 (374)
T TIGR00308 124 GTPAPFVDSAIQASAERGLLLVTATDTSALCGNYPKSCLRKYGANPVKTESCHESALRLLLGFVKRTAAKYEKALEPLLS 203 (374)
T ss_pred CCcHHHHHHHHHhcccCCEEEEEecccHHhcCCChHHHHHHhCCcccCCcchHHHHHHHHHHHHHHHHHHcCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEEEEEeCccc---ccccceeEEEcCCCCCcccccccccCCCCC-CCCCCCCCCcceeeccccccCCCCH
Q 019408 160 YYSYHGPVFRVMLRVHRKALP---DNRHYGFISYCNHCGNSQAYSWEELGQMSC-PCSNTIGSSSLVVSGPLWTGPLHDA 235 (341)
Q Consensus 160 ~~~~~dhy~Rv~vrv~~~~~~---~~~~~g~v~~C~~C~~~~~~~~~~~~~~~C-~c~~~~~~~~~~~~GPlW~G~lhd~ 235 (341)
++ .|||+||||||.+|+.+ ..+++||++||++|+++...+........| +|++ +++++||||+|||||+
T Consensus 204 ~~--~~~y~Rv~vrv~~~~~~~~~~~~~~g~v~~C~~c~~~~~~~~~~~~~~~C~~c~~-----~~~~~GPlW~G~l~d~ 276 (374)
T TIGR00308 204 HS--IDHYVRVYVKVKRSAIRADKVMESTGYTYHCSRCLHNKPVNGISQRKGRCKECGG-----EYHLAGPLYAGPLHDK 276 (374)
T ss_pred ee--eCcEEEEEEEEecCHHHHHHHHHhceeEEECCCcccccccccccCCCCCCCCCCC-----cceeecCcccCccCCH
Confidence 99 99999999999999765 567899999999998886544322333568 4665 8999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCChhhHHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecC
Q 019408 236 THITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIA 315 (341)
Q Consensus 236 ~fv~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~ 315 (341)
+||++|++.++...|. +..++.++|+.+.+| .+.||+||++++||+++|+++||++.++++|+++||+||||||+
T Consensus 277 ~fl~~m~~~~~~~~~~---~~~~~~~lL~~~~~E--~~~~p~~y~~~~i~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~ 351 (374)
T TIGR00308 277 EFIEEVLRIAEEKEYG---TRKRVLKMLSLIKNE--LSDPPGYYSPHHIASVLKLSVPPLKDVVAGLKSLGFEASRTHYQ 351 (374)
T ss_pred HHHHHHHHhhhhcccc---chHHHHHHHHHHHhc--cCCCCeEEeHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEeeeeC
Confidence 9999999998877663 345799999999987 44688999999999999999999999999999999999999999
Q ss_pred CCceecCCCHHHHHHHHHhhh
Q 019408 316 SNAIKTNCPMVACIRIAKELQ 336 (341)
Q Consensus 316 ~~~iKTdAp~~~i~~i~~~~~ 336 (341)
|+|||||||+++||+++++|.
T Consensus 352 p~~iKTdAp~~~i~~i~~~~~ 372 (374)
T TIGR00308 352 PSGIKTDAPWDAIWEVLQKCD 372 (374)
T ss_pred CCcEecCCCHHHHHHHHHhcc
Confidence 999999999999999999986
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-91 Score=682.95 Aligned_cols=323 Identities=35% Similarity=0.512 Sum_probs=296.9
Q ss_pred CccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 1 MCGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 1 fagsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
|||||+|+||||+| .|+.+|++||.|+.|++.|++|+++|+++ +.+++.+.||+.+|.+.....++||+||||||
T Consensus 117 lsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~----~ive~~~~DA~~lM~~~~~~~~~FDvIDLDPy 192 (525)
T KOG1253|consen 117 LSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE----DIVEPHHSDANVLMYEHPMVAKFFDVIDLDPY 192 (525)
T ss_pred hhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch----hhcccccchHHHHHHhccccccccceEecCCC
Confidence 68999999999999 78899999999999999999999999885 78899999999999987655578999999999
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFS 159 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s 159 (341)
|+|++|||+|+|+|++||||+|||||+++|||+.|++|+.+||+.+++++|+||+++|+||+.|.++|++|+|+|+||+|
T Consensus 193 Gs~s~FLDsAvqav~~gGLL~vT~TD~aVL~gn~pe~C~~kYG~~~lr~~~chE~aLRill~~i~~~Aary~r~IePLlS 272 (525)
T KOG1253|consen 193 GSPSPFLDSAVQAVRDGGLLCVTCTDMAVLAGNAPEKCYSKYGASILRMKYCHEMALRILLAAIARAAARYGRYVEPLLS 272 (525)
T ss_pred CCccHHHHHHHHHhhcCCEEEEEecchHhhccCChhhHHHhcCcccccchhhhHHHHHHHHHHHHHHHHHhCCcceeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEEEEEEEEeCccc---ccccceeEEEcCCCCCcccccccccC------------C----CCC-CCCCCCCCC
Q 019408 160 YYSYHGPVFRVMLRVHRKALP---DNRHYGFISYCNHCGNSQAYSWEELG------------Q----MSC-PCSNTIGSS 219 (341)
Q Consensus 160 ~~~~~dhy~Rv~vrv~~~~~~---~~~~~g~v~~C~~C~~~~~~~~~~~~------------~----~~C-~c~~~~~~~ 219 (341)
++ .||||||||||++|+.+ ..++++|++||.+|++++.|++++.. + ..| +|+.
T Consensus 273 is--~DFYVRVFVRV~t~~~~~k~~~~k~~~v~hC~gC~s~~~q~lg~~~~~~~~~~~~~~~gp~v~~~C~hcg~----- 345 (525)
T KOG1253|consen 273 LS--IDFYVRVFVRVYTGPPKVKNTRSKYGLVYHCSGCGSFHLQPLGRTSPNPGSTKFSEAGGPPVPCNCEHCGK----- 345 (525)
T ss_pred EE--eeeEEEEEEEEEccCchhhccccceeEEEEecCcchhhcccccccCCCCccceeccCCCCCCCcccccccc-----
Confidence 99 99999999999999877 45679999999999999999988422 1 235 4555
Q ss_pred cceeeccccccCCCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHH
Q 019408 220 SLVVSGPLWTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMM 299 (341)
Q Consensus 220 ~~~~~GPlW~G~lhd~~fv~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~ 299 (341)
+++++||||.|||||++||++||+.+++.+.....+.+|+.++|+...|| +.+.|+||++++||+.+|+++||.+.++
T Consensus 346 ~~~l~GP~W~~PlHd~~fv~~mL~~~k~~~~~~~~t~kri~g~L~~~~ee--L~dvp~y~~~~~l~s~lk~~~p~~~~~~ 423 (525)
T KOG1253|consen 346 RLHLGGPMWSGPLHDAEFVTEMLEIAKEVSEDTYGTDKRLSGMLELVDEE--LPDVPLYYSLNQLCSVLKCNSPPLKKFR 423 (525)
T ss_pred cccccCccccCccccHHHHHHHHHHhhcCCccccchhhhheehhhccccc--ccCCccccchhhhhhhhcccCCcHHHHH
Confidence 99999999999999999999999999876544333556788888888876 3334799999999999999999999999
Q ss_pred HHHHHCCCEEeeeecCCCceecCCCHHHHHHHHHhhh
Q 019408 300 SAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQ 336 (341)
Q Consensus 300 ~~L~~~Gy~as~tH~~~~~iKTdAp~~~i~~i~~~~~ 336 (341)
+||.++||++|+||..|+|||||||++.||||||.|.
T Consensus 424 sAllnaGyrvS~sH~~~naiKTnAP~s~iwdi~r~~~ 460 (525)
T KOG1253|consen 424 SALLNAGYRVSGSHANPNAIKTNAPMSHIWDILRCWI 460 (525)
T ss_pred HHHHhccceeccccccccccccCCCHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-84 Score=639.53 Aligned_cols=313 Identities=34% Similarity=0.543 Sum_probs=286.9
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
|||||+||||+++|.++.+|++||+|+.|++.+++|+++|+++ .++++++|++.+|.. ..+||+||+||||
T Consensus 65 ~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-----~~~v~~~Da~~~l~~----~~~fD~V~lDP~G 135 (382)
T PRK04338 65 LSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-----NEKVFNKDANALLHE----ERKFDVVDIDPFG 135 (382)
T ss_pred CCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----ceEEEhhhHHHHHhh----cCCCCEEEECCCC
Confidence 7999999999999888889999999999999999999999984 567899999999864 3469999999999
Q ss_pred CCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEec
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSY 160 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s~ 160 (341)
++.+|++.|++.+++||+|+||+||+++|||+++.+++++||..|.+++|+||+|||+||+.++|+|++|+++|+||+|+
T Consensus 136 s~~~~l~~al~~~~~~gilyvSAtD~~~L~g~y~~~~~~~yd~fP~~~~~~~E~glRill~~i~r~Aa~~~~~i~Pl~s~ 215 (382)
T PRK04338 136 SPAPFLDSAIRSVKRGGLLCVTATDTAPLCGAYPKSCLRKYGAVPLKTEFYHEMGLRILIGYIAREAAKYDKGLEPLFSH 215 (382)
T ss_pred CcHHHHHHHHHHhcCCCEEEEEecCchhhcCCChHHHHHHhcCcccCCcchhHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEEEEEeCccc---ccccceeEEEcCCCCCcccccccccCCCCCC-CCCCCCCCcceeeccccccCCCCHH
Q 019408 161 YSYHGPVFRVMLRVHRKALP---DNRHYGFISYCNHCGNSQAYSWEELGQMSCP-CSNTIGSSSLVVSGPLWTGPLHDAT 236 (341)
Q Consensus 161 ~~~~dhy~Rv~vrv~~~~~~---~~~~~g~v~~C~~C~~~~~~~~~~~~~~~C~-c~~~~~~~~~~~~GPlW~G~lhd~~ 236 (341)
+ .|||+||||||.+|+.+ ..+++||++||++|++++.+++ . ....|+ |++ +++++||||+|||||++
T Consensus 216 ~--~~~y~Rv~vrv~~~~~~~~~~~~~~g~~~~C~~c~~~~~~~~-~-~~~~C~~c~~-----~~~~~GPlW~G~l~d~~ 286 (382)
T PRK04338 216 S--TDHYYRVFLKVERGAKKADKALENLGYVYYCPKCLYREEVEG-L-PPEECPVCGG-----KFGTAGPLWLGPLHDKE 286 (382)
T ss_pred e--eccEEEEEEEEecCHHHHHHHHHhceeEEECCCCCcEEEecC-C-CCCCCCCCCC-----cceeccccccCccCCHH
Confidence 9 99999999999999765 5678999999999999998765 2 224684 555 89999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCChhhHHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCC
Q 019408 237 HITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIAS 316 (341)
Q Consensus 237 fv~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~ 316 (341)
||++|++.++ ..+ ...+++.++|+.+.+|.+++ +|+||++++||+++|+++||++.++++|+++||+||||||+|
T Consensus 287 fl~~~~~~~~-~~~---~~~~~~~~ll~~~~~E~~~~-~p~~y~~~~i~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~p 361 (382)
T PRK04338 287 FVEEMLEEAA-KEL---GTSKKALKLLKTIEEESKLD-TPTFYDLHELAKKLKVSAPPMDEILEALREAGFEASRTHFSP 361 (382)
T ss_pred HHHHHHHHhh-hhc---cchHHHHHHHHHHHhccCCC-CCcEEcHHHHHhhcCCCCCCHHHHHHHHHHCCCeEEeeEECC
Confidence 9999999885 112 23457999999999885554 579999999999999999999999999999999999999999
Q ss_pred CceecCCCHHHHHHHHHhhh
Q 019408 317 NAIKTNCPMVACIRIAKELQ 336 (341)
Q Consensus 317 ~~iKTdAp~~~i~~i~~~~~ 336 (341)
+|||||||+++||+++++|.
T Consensus 362 ~~iKTdAp~~~i~~i~~~~~ 381 (382)
T PRK04338 362 TGFKTDAPYDEIKEAIKSLS 381 (382)
T ss_pred CcEecCCCHHHHHHHHHHhc
Confidence 99999999999999999986
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=171.95 Aligned_cols=138 Identities=17% Similarity=0.058 Sum_probs=122.6
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
||-||.+|+-+|. .||++||.||+|..|+++.++|+++|+++ ..++.++++||+++|++...++++||+|++||
T Consensus 225 FsYTGgfSv~Aa~-gGA~~vt~VD~S~~al~~a~~N~~LNg~~---~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPs 300 (393)
T COG1092 225 FSYTGGFSVHAAL-GGASEVTSVDLSKRALEWARENAELNGLD---GDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPS 300 (393)
T ss_pred cccCcHHHHHHHh-cCCCceEEEeccHHHHHHHHHHHHhcCCC---ccceeeehhhHHHHHHHHHhcCCcccEEEECCcc
Confidence 7899999999999 79999999999999999999999999994 35688999999999999998899999999999
Q ss_pred CCCCH-----------HHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHH
Q 019408 79 FGSDS-----------SFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREA 147 (341)
Q Consensus 79 ygsp~-----------~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~A 147 (341)
|+... ..++.++++|++||+|.+ +| |..+ ++...|++.|++++
T Consensus 301 F~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~-~s-----~~~~--------------------~~~~~f~~~i~~a~ 354 (393)
T COG1092 301 FARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVT-SS-----CSRH--------------------FSSDLFLEIIARAA 354 (393)
T ss_pred cccCcccchhHHHHHHHHHHHHHHHcCCCCEEEE-Ee-----cCCc--------------------cCHHHHHHHHHHHH
Confidence 65321 234588899999999996 66 7543 88899999999999
Q ss_pred HhcCCcEEEEEecccCCCCeE
Q 019408 148 SAQGYHVSPLFSYYSYHGPVF 168 (341)
Q Consensus 148 a~~~~~i~Pl~s~~~~~dhy~ 168 (341)
.+.++.++-+-...||.||++
T Consensus 355 ~~~~~~~~~~~~~~~~~D~p~ 375 (393)
T COG1092 355 AAAGRRAQEIEGEGQPPDHPR 375 (393)
T ss_pred HhcCCcEEEeeccCCCCCccc
Confidence 999999999999999999954
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-18 Score=155.15 Aligned_cols=120 Identities=24% Similarity=0.266 Sum_probs=90.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||++|||++| +||++|+++|.|+.|++.|++|++..++. +++++++.|++.++.+....+++||+|++|| |
T Consensus 50 FaGSGalGlEALS-RGA~~v~fVE~~~~a~~~i~~N~~~l~~~----~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY 124 (183)
T PF03602_consen 50 FAGSGALGLEALS-RGAKSVVFVEKNRKAIKIIKKNLEKLGLE----DKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPY 124 (183)
T ss_dssp T-TTSHHHHHHHH-TT-SEEEEEES-HHHHHHHHHHHHHHT-G----GGEEEEESSHHHHHHHHHHCTS-EEEEEE--ST
T ss_pred CCccCccHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHhCCC----cceeeeccCHHHHHHhhcccCCCceEEEECCCc
Confidence 8999999999999 89999999999999999999999999884 5789999999999987766678999999999 8
Q ss_pred CCCHH---HHHHHH--HhcccCCEEEEEecC---CCCCCCCCchhHHhhhcccc
Q 019408 80 GSDSS---FLRTVF--NAVKRDGLLYLTSTD---GYSSGGHRPNNSLASYGAYI 125 (341)
Q Consensus 80 gsp~~---fld~al--~~v~~gGlL~vt~TD---~~~l~g~~~~~~~r~Yg~~~ 125 (341)
..... .++... ..++++|+++++..- .....+.......|+||.+.
T Consensus 125 ~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~~~~~~~~~~~~~~~r~yG~t~ 178 (183)
T PF03602_consen 125 AKGLYYEELLELLAENNLLNEDGLIIIEHSKKEDLPESPGNWELIKERKYGDTK 178 (183)
T ss_dssp TSCHHHHHHHHHHHHTTSEEEEEEEEEEEETTSSS-SEETTEEEEEEEEETTEE
T ss_pred ccchHHHHHHHHHHHCCCCCCCEEEEEEecCCCCCccCCCCEEEEEEecCCCEE
Confidence 86522 222222 467889999985532 22335666777888999864
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.5e-17 Score=159.42 Aligned_cols=140 Identities=12% Similarity=0.041 Sum_probs=117.7
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||.+||.++. .|+.+|+++|+|+.+++.+++|+++|+++ .++++++++|++++|......+++||+|++|| |
T Consensus 228 fsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ngl~---~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~ 303 (396)
T PRK15128 228 FSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNKLD---LSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPK 303 (396)
T ss_pred ccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC---CCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCC
Confidence 7999999999887 68889999999999999999999999983 13688999999999977654456899999999 3
Q ss_pred CCCH------------HHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHH
Q 019408 80 GSDS------------SFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREA 147 (341)
Q Consensus 80 gsp~------------~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~A 147 (341)
-.+. .++..|+++|++||+|.+ +| |. +.++...|...+.++|
T Consensus 304 f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~-~s-----cs--------------------~~~~~~~f~~~v~~aa 357 (396)
T PRK15128 304 FVENKSQLMGACRGYKDINMLAIQLLNPGGILLT-FS-----CS--------------------GLMTSDLFQKIIADAA 357 (396)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEE-Ee-----CC--------------------CcCCHHHHHHHHHHHH
Confidence 2221 123367899999999996 55 64 3477889999999999
Q ss_pred HhcCCcEEEEEecccCCCCeEEE
Q 019408 148 SAQGYHVSPLFSYYSYHGPVFRV 170 (341)
Q Consensus 148 a~~~~~i~Pl~s~~~~~dhy~Rv 170 (341)
.+.++.++.+-...||.||++..
T Consensus 358 ~~~~~~~~~l~~~~~~~DhP~~~ 380 (396)
T PRK15128 358 IDAGRDVQFIEQFRQAADHPVIA 380 (396)
T ss_pred HHcCCeEEEEEEcCCCCCCCCCC
Confidence 99999999999999999999754
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-17 Score=145.79 Aligned_cols=117 Identities=22% Similarity=0.251 Sum_probs=94.4
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||++|||++| |||++|+++|.|..|+.+|++|++..++. ...+++++||.++|.....+ +.||+|++|| |
T Consensus 51 FAGSGaLGlEAlS-RGA~~~~~vE~~~~a~~~l~~N~~~l~~~----~~~~~~~~da~~~L~~~~~~-~~FDlVflDPPy 124 (187)
T COG0742 51 FAGSGALGLEALS-RGAARVVFVEKDRKAVKILKENLKALGLE----GEARVLRNDALRALKQLGTR-EPFDLVFLDPPY 124 (187)
T ss_pred cCCccHhHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCc----cceEEEeecHHHHHHhcCCC-CcccEEEeCCCC
Confidence 8999999999999 89999999999999999999999998874 57889999999888876432 2599999999 8
Q ss_pred CCCHHHH--HHHH------HhcccCCEEEEEecCCC----CCCCCCchhHHhhhccccC
Q 019408 80 GSDSSFL--RTVF------NAVKRDGLLYLTSTDGY----SSGGHRPNNSLASYGAYIL 126 (341)
Q Consensus 80 gsp~~fl--d~al------~~v~~gGlL~vt~TD~~----~l~g~~~~~~~r~Yg~~~~ 126 (341)
+. .++ ..++ ..|+++|++++ .+|.. .+.........++||.+.+
T Consensus 125 ~~--~l~~~~~~~~~~~~~~~L~~~~~iv~-E~~~~~~~~~~~~~~~~~r~k~yG~t~l 180 (187)
T COG0742 125 AK--GLLDKELALLLLEENGWLKPGALIVV-EHDKDVELPELPANFELHREKKYGQTKL 180 (187)
T ss_pred cc--chhhHHHHHHHHHhcCCcCCCcEEEE-EeCCCcCccccCCCeEEEEEeecCCEEE
Confidence 74 444 3333 34888888887 44433 3567777888899998753
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-16 Score=149.04 Aligned_cols=133 Identities=20% Similarity=0.121 Sum_probs=95.3
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
||-||.+|+-+++ .||.+|+.+|.|..|+++.++|+++|+++ .++++++++|++++|.+.. ++.+||+|++||
T Consensus 131 FsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~---~~~~~~~~~Dvf~~l~~~~-~~~~fD~IIlDPPs 205 (286)
T PF10672_consen 131 FSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLD---LDRHRFIQGDVFKFLKRLK-KGGRFDLIILDPPS 205 (286)
T ss_dssp T-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-C---CTCEEEEES-HHHHHHHHH-HTT-EEEEEE--SS
T ss_pred cCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEEecCHHHHHHHHh-cCCCCCEEEECCCC
Confidence 7899999999988 79999999999999999999999999984 3578899999999998754 356899999999
Q ss_pred CCCCH--------HHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhc
Q 019408 79 FGSDS--------SFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQ 150 (341)
Q Consensus 79 ygsp~--------~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~ 150 (341)
|.+.. ..+..+++++++||+|.+ +| |. +.++...|+..+.++|.
T Consensus 206 F~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~-~s-----cs--------------------~~i~~~~l~~~~~~~a~-- 257 (286)
T PF10672_consen 206 FAKSKFDLERDYKKLLRRAMKLLKPGGLLLT-CS-----CS--------------------HHISPDFLLEAVAEAAR-- 257 (286)
T ss_dssp EESSTCEHHHHHHHHHHHHHHTEEEEEEEEE-EE---------------------------TTS-HHHHHHHHHHHHH--
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCEEEE-Ec-----CC--------------------cccCHHHHHHHHHHhCc--
Confidence 54321 234588999999999975 66 64 33667778888887775
Q ss_pred CCcEEEEEecccCCCCeE
Q 019408 151 GYHVSPLFSYYSYHGPVF 168 (341)
Q Consensus 151 ~~~i~Pl~s~~~~~dhy~ 168 (341)
.++.+-.+.||+||+=
T Consensus 258 --~~~~~~~~~~p~df~~ 273 (286)
T PF10672_consen 258 --EVEFIERLGQPPDFPD 273 (286)
T ss_dssp --HCEEEEEEE-------
T ss_pred --cceEeeeecccccccc
Confidence 5688899999999974
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=136.77 Aligned_cols=118 Identities=16% Similarity=0.159 Sum_probs=91.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||.+||++++ +|+.+|+++|+|+.|++++++|++.|++. ++++++++|+.+++.........||+|++|| |
T Consensus 57 faGsG~lglea~s-rga~~v~~vE~~~~a~~~~~~N~~~~~~~----~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy 131 (189)
T TIGR00095 57 FAGSGLLGEEALS-RGAKVAFLEEDDRKANQTLKENLALLKSG----EQAEVVRNSALRALKFLAKKPTFDNVIYLDPPF 131 (189)
T ss_pred cCCCcHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHhCCc----ccEEEEehhHHHHHHHhhccCCCceEEEECcCC
Confidence 7999999999999 89999999999999999999999999884 4688999999998865433334689999999 7
Q ss_pred CCCHHHHHHHH------HhcccCCEEEEEecCCCCC---CCCCchhHHhhhcccc
Q 019408 80 GSDSSFLRTVF------NAVKRDGLLYLTSTDGYSS---GGHRPNNSLASYGAYI 125 (341)
Q Consensus 80 gsp~~fld~al------~~v~~gGlL~vt~TD~~~l---~g~~~~~~~r~Yg~~~ 125 (341)
+. .+.+..+ ..++++|+++++......+ .+.......|+||.+.
T Consensus 132 ~~--~~~~~~l~~l~~~~~l~~~~iiv~E~~~~~~~~~~~~~~~~~~~r~yG~t~ 184 (189)
T TIGR00095 132 FN--GALQALLELCENNWILEDTVLIVVEEDREPELPPVEAWLSLKRQKKGGVSY 184 (189)
T ss_pred CC--CcHHHHHHHHHHCCCCCCCeEEEEEecCCCCCCCCcCCeEEEEEeecCcEE
Confidence 65 2333322 2578889998865543332 2344556778999874
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=145.67 Aligned_cols=131 Identities=17% Similarity=0.141 Sum_probs=105.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
|||||.+||.+++ .|+.+|+++|+|+.|++.+++|+++|++. .++++++++|++++|... +++||+|++||
T Consensus 546 f~gtG~~sl~aa~-~Ga~~V~~vD~s~~al~~a~~N~~~ng~~---~~~v~~i~~D~~~~l~~~---~~~fDlIilDPP~ 618 (702)
T PRK11783 546 FAYTGTASVHAAL-GGAKSTTTVDMSNTYLEWAERNFALNGLS---GRQHRLIQADCLAWLKEA---REQFDLIFIDPPT 618 (702)
T ss_pred CCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCCC---ccceEEEEccHHHHHHHc---CCCcCEEEECCCC
Confidence 7999999999998 69999999999999999999999999983 246899999999998654 45899999999
Q ss_pred CCCC-------------HHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHH
Q 019408 79 FGSD-------------SSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVR 145 (341)
Q Consensus 79 ygsp-------------~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~ 145 (341)
|+.. ...+..+++.|++||+|++ ++ |... +.. ..+
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~-~~-----~~~~--------------------~~~------~~~ 666 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYF-SN-----NKRG--------------------FKM------DEE 666 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEE-Ee-----CCcc--------------------CCh------hHH
Confidence 3321 1245678899999999987 44 4321 111 166
Q ss_pred HHHhcCCcEEEEEecccCCCCeEEE
Q 019408 146 EASAQGYHVSPLFSYYSYHGPVFRV 170 (341)
Q Consensus 146 ~Aa~~~~~i~Pl~s~~~~~dhy~Rv 170 (341)
++.+.|+.++.+-...||.||++..
T Consensus 667 ~~~~~g~~~~~i~~~~~~~Dhp~~~ 691 (702)
T PRK11783 667 GLAKLGLKAEEITAKTLPPDFARNP 691 (702)
T ss_pred HHHhCCCeEEEEecCCCCCCCCCCc
Confidence 7778899999999999999999644
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.8e-13 Score=119.93 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=87.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||.+||++++ +++.+|+++|+|++|++.+++|++.++++ +++++++|+.+++... .+.||+|++|| |
T Consensus 61 ~~GsG~l~l~~ls-r~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-----~v~~~~~D~~~~l~~~---~~~fDlV~~DPPy 131 (199)
T PRK10909 61 FAGSGALGLEALS-RYAAGATLLEMDRAVAQQLIKNLATLKAG-----NARVVNTNALSFLAQP---GTPHNVVFVDPPF 131 (199)
T ss_pred CCCccHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCC-----cEEEEEchHHHHHhhc---CCCceEEEECCCC
Confidence 6999999999888 68889999999999999999999999873 6889999999887532 34699999999 6
Q ss_pred CCCHHHHHHHHHh------cccCCEEEEEecCCCC---CCCCCchhHHhhhccccC
Q 019408 80 GSDSSFLRTVFNA------VKRDGLLYLTSTDGYS---SGGHRPNNSLASYGAYIL 126 (341)
Q Consensus 80 gsp~~fld~al~~------v~~gGlL~vt~TD~~~---l~g~~~~~~~r~Yg~~~~ 126 (341)
.. .+.+.+++. +.++++++|.+.-... +-........|+||.+-+
T Consensus 132 ~~--g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~~~~~~~~~~~~~~k~yG~s~~ 185 (199)
T PRK10909 132 RK--GLLEETINLLEDNGWLADEALIYVESEVENGLPTVPANWQLHREKVAGQVAY 185 (199)
T ss_pred CC--ChHHHHHHHHHHCCCcCCCcEEEEEecCCCCcccCCCccEEEEEecCCCEEE
Confidence 54 444444443 4678999986542222 222344567888987743
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-12 Score=117.74 Aligned_cols=91 Identities=25% Similarity=0.245 Sum_probs=72.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
|||.|.++|.+|+-+.++.|+++|+||.|++.+++|+++|+++ +.++++++|+.+++. ...||.|+++...
T Consensus 109 faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~----~~i~~~~~D~~~~~~-----~~~~drvim~lp~ 179 (200)
T PF02475_consen 109 FAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE----NRIEVINGDAREFLP-----EGKFDRVIMNLPE 179 (200)
T ss_dssp T-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T----TTEEEEES-GGG--------TT-EEEEEE--TS
T ss_pred cCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC----CeEEEEcCCHHHhcC-----ccccCEEEECChH
Confidence 8999999999998556789999999999999999999999995 678899999999886 2479999999876
Q ss_pred CCHHHHHHHHHhcccCCEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~ 100 (341)
+...|++.|+.++++||+++
T Consensus 180 ~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 180 SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp SGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcEEE
Confidence 66799999999999999986
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.2e-11 Score=116.26 Aligned_cols=95 Identities=21% Similarity=0.111 Sum_probs=84.6
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
|||.|-++|-+|+ .|+.+|+++|+||.|++++++|+++|+++ +.++++++|++.+..+. ..||-|+|-=+.
T Consensus 196 FAGVGpfsi~~Ak-~g~~~V~A~diNP~A~~~L~eNi~LN~v~----~~v~~i~gD~rev~~~~----~~aDrIim~~p~ 266 (341)
T COG2520 196 FAGVGPFSIPIAK-KGRPKVYAIDINPDAVEYLKENIRLNKVE----GRVEPILGDAREVAPEL----GVADRIIMGLPK 266 (341)
T ss_pred cCCcccchhhhhh-cCCceEEEEecCHHHHHHHHHHHHhcCcc----ceeeEEeccHHHhhhcc----ccCCEEEeCCCC
Confidence 8999999999999 57766999999999999999999999995 56889999999998764 479999998766
Q ss_pred CCHHHHHHHHHhcccCCEEEEEec
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~T 104 (341)
++-.|++.|++++++||+|..-.+
T Consensus 267 ~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 267 SAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred cchhhHHHHHHHhhcCcEEEEEec
Confidence 667999999999999999997543
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=94.99 Aligned_cols=95 Identities=26% Similarity=0.255 Sum_probs=78.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
++|||.+.+.++.. +..+++++|+|+.++++.++|+..+++. ++++++++|+.++.... ...+||+|+.|| |
T Consensus 8 ~~G~G~~~~~~~~~-~~~~~~gvdi~~~~~~~a~~~~~~~~~~----~~~~~~~~D~~~~~~~~--~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 8 GCGSGTFLLAALRR-GAARVTGVDIDPEAVELARRNLPRNGLD----DRVEVIVGDARDLPEPL--PDGKFDLIVTNPPY 80 (117)
T ss_dssp TSTTCHHHHHHHHH-CTCEEEEEESSHHHHHHHHHHCHHCTTT----TTEEEEESHHHHHHHTC--TTT-EEEEEE--ST
T ss_pred CcchHHHHHHHHHH-CCCeEEEEEECHHHHHHHHHHHHHccCC----ceEEEEECchhhchhhc--cCceeEEEEECCCC
Confidence 58999999999985 6889999999999999999999999874 57899999999887433 346899999999 7
Q ss_pred CCC-----------HHHHHHHHHhcccCCEEEEE
Q 019408 80 GSD-----------SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 gsp-----------~~fld~al~~v~~gGlL~vt 102 (341)
+.. ..|++.+.+.|++||.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 632 36788999999999999874
|
... |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=106.34 Aligned_cols=93 Identities=15% Similarity=0.140 Sum_probs=70.4
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc------------C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK------------R 68 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~------------~ 68 (341)
|||||.+|+..+ +++.+|+++|+|+.|++.+++|++.|+++ +++++++|+.+++...... +
T Consensus 214 ~~G~G~~sl~la--~~~~~v~~vE~~~~ai~~a~~N~~~~~~~-----~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 214 YCGNGNFTLALA--RNFRRVLATEISKPSVAAAQYNIAANGID-----NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred eccccHHHHHHH--hhCCEEEEEECCHHHHHHHHHHHHHhCCC-----cEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 699999999444 36789999999999999999999999983 6889999999998754221 2
Q ss_pred CcccEEEeCC-CCCCHHHHHHHHHhc-ccCCEEEEEe
Q 019408 69 EFFDLIDIDS-FGSDSSFLRTVFNAV-KRDGLLYLTS 103 (341)
Q Consensus 69 ~~fDvIdlDP-ygsp~~fld~al~~v-~~gGlL~vt~ 103 (341)
.+||+|++|| +.- ..+.+++.+ +.+++++|+|
T Consensus 287 ~~~D~v~lDPPR~G---~~~~~l~~l~~~~~ivyvSC 320 (362)
T PRK05031 287 YNFSTIFVDPPRAG---LDDETLKLVQAYERILYISC 320 (362)
T ss_pred CCCCEEEECCCCCC---CcHHHHHHHHccCCEEEEEe
Confidence 2699999999 321 122233322 3588999854
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-09 Score=104.87 Aligned_cols=92 Identities=9% Similarity=0.112 Sum_probs=73.6
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||.+|+.+++ .+ .+|+++|+|+.|++.+++|++.|+++ +++++++|+.+++... ...||+|++|| +
T Consensus 241 ~cG~G~~~l~la~-~~-~~v~~vE~~~~av~~a~~N~~~~~~~-----~~~~~~~d~~~~~~~~---~~~~D~vi~DPPr 310 (374)
T TIGR02085 241 FCGVGGFGLHCAG-PD-TQLTGIEIESEAIACAQQSAQMLGLD-----NLSFAALDSAKFATAQ---MSAPELVLVNPPR 310 (374)
T ss_pred cCCccHHHHHHhh-cC-CeEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEECCHHHHHHhc---CCCCCEEEECCCC
Confidence 6999999999997 55 68999999999999999999999883 6889999999887542 23599999999 4
Q ss_pred CC-CHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GS-DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gs-p~~fld~al~~v~~gGlL~vt~ 103 (341)
.- ...+++ ++..++++++++|.|
T Consensus 311 ~G~~~~~l~-~l~~~~p~~ivyvsc 334 (374)
T TIGR02085 311 RGIGKELCD-YLSQMAPKFILYSSC 334 (374)
T ss_pred CCCcHHHHH-HHHhcCCCeEEEEEe
Confidence 32 223344 444578899999854
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.8e-09 Score=96.40 Aligned_cols=98 Identities=17% Similarity=0.128 Sum_probs=78.9
Q ss_pred ccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc--CCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK--REFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~--~~~fDvIdlDP 78 (341)
+|+|.-++..+.. .+..+|+++|+|+++++.+++|++.+++. ++++++++||.+.|..+... .+.||+|++|.
T Consensus 77 t~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~----~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa 152 (234)
T PLN02781 77 VFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD----HKINFIQSDALSALDQLLNNDPKPEFDFAFVDA 152 (234)
T ss_pred CcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEccHHHHHHHHHhCCCCCCCCEEEECC
Confidence 5788877766654 44579999999999999999999999985 67899999999999876433 35799999996
Q ss_pred CC-CCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 FG-SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 yg-sp~~fld~al~~v~~gGlL~vt~ 103 (341)
-. ....+++.+++.+++||+|.+.-
T Consensus 153 ~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 153 DKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 21 11367889999999999999744
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.4e-09 Score=104.56 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=76.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
+||+|.+++.+++ .+.+|+++|+|+.+++.+++|++.|++ .+++++++|+.+++.........||+|++||
T Consensus 300 ~cG~G~~sl~la~--~~~~V~~vE~~~~av~~a~~n~~~~~~-----~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr 372 (431)
T TIGR00479 300 YCGVGTFTLPLAK--QAKSVVGIEVVPESVEKAQQNAELNGI-----ANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR 372 (431)
T ss_pred CCCcCHHHHHHHH--hCCEEEEEEcCHHHHHHHHHHHHHhCC-----CceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC
Confidence 6899999999887 357899999999999999999999988 3688999999988765433345799999999
Q ss_pred CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
.|-...+++ ++..++++++++++|
T Consensus 373 ~G~~~~~l~-~l~~l~~~~ivyvsc 396 (431)
T TIGR00479 373 KGCAAEVLR-TIIELKPERIVYVSC 396 (431)
T ss_pred CCCCHHHHH-HHHhcCCCEEEEEcC
Confidence 343346665 455688999999844
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.2e-09 Score=101.83 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=70.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhh-------c-----C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYL-------K-----R 68 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~-------~-----~ 68 (341)
|||||.+|+-.+. ++.+|+++|+|++|++.+++|++.|+++ +++++++|+.+++..... . .
T Consensus 205 ~~G~G~~sl~la~--~~~~v~~vE~~~~av~~a~~n~~~~~~~-----~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 205 YCGNGNFSLALAQ--NFRRVLATEIAKPSVNAAQYNIAANNID-----NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred eccccHHHHHHHH--hCCEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 6999999994443 6779999999999999999999999984 688999999999864211 1 1
Q ss_pred CcccEEEeCCC--CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 69 EFFDLIDIDSF--GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 69 ~~fDvIdlDPy--gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
.+||+|++||- |.....++.. .+++++++|+|
T Consensus 278 ~~~d~v~lDPPR~G~~~~~l~~l---~~~~~ivYvsC 311 (353)
T TIGR02143 278 YNCSTIFVDPPRAGLDPDTCKLV---QAYERILYISC 311 (353)
T ss_pred CCCCEEEECCCCCCCcHHHHHHH---HcCCcEEEEEc
Confidence 24899999993 3222333432 23689999955
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.5e-09 Score=93.15 Aligned_cols=78 Identities=23% Similarity=0.268 Sum_probs=68.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||||++||-++. .||.+|+++|++++|+++.++|++.++ .+++++..|+.++ ..+||.|+++| ||
T Consensus 54 ~GTG~La~ga~~-lGa~~V~~vdiD~~a~ei~r~N~~~l~------g~v~f~~~dv~~~-------~~~~dtvimNPPFG 119 (198)
T COG2263 54 AGTGILAIGAAL-LGASRVLAVDIDPEALEIARANAEELL------GDVEFVVADVSDF-------RGKFDTVIMNPPFG 119 (198)
T ss_pred CCcCHHHHHHHh-cCCcEEEEEecCHHHHHHHHHHHHhhC------CceEEEEcchhhc-------CCccceEEECCCCc
Confidence 799999999999 899999999999999999999999843 4688999999875 24799999999 98
Q ss_pred C-----CHHHHHHHHHhc
Q 019408 81 S-----DSSFLRTVFNAV 93 (341)
Q Consensus 81 s-----p~~fld~al~~v 93 (341)
+ -.+|++.|++.-
T Consensus 120 ~~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 120 SQRRHADRPFLLKALEIS 137 (198)
T ss_pred cccccCCHHHHHHHHHhh
Confidence 6 358999999864
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-08 Score=95.84 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=80.2
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc--CCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK--REFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~--~~~fDvIdlDP 78 (341)
+++|.-+|.+|+-.+ -.+|+.+|.+++..+.+++|++..|+. ++++++.+||.+.|.++..+ ...||+|++|+
T Consensus 127 T~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~----~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa 202 (278)
T PLN02476 127 VYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS----HKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDA 202 (278)
T ss_pred CCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEcCHHHHHHHHHhcccCCCCCEEEECC
Confidence 689999999987422 347999999999999999999999985 68999999999999876322 25799999999
Q ss_pred CC-CCHHHHHHHHHhcccCCEEEEE
Q 019408 79 FG-SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 yg-sp~~fld~al~~v~~gGlL~vt 102 (341)
-. .-..+++.++++|++||+|.+-
T Consensus 203 ~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 203 DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 32 1237788999999999999974
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.9e-08 Score=87.21 Aligned_cols=127 Identities=15% Similarity=0.119 Sum_probs=95.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||..++.++......+|+++|+|+.+++.+++|++.+++. +++++++|+.++. ....||+|+.+.+..
T Consensus 51 cGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-----~i~~i~~d~~~~~-----~~~~fD~I~s~~~~~ 120 (181)
T TIGR00138 51 SGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-----NVEIVNGRAEDFQ-----HEEQFDVITSRALAS 120 (181)
T ss_pred CCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-----CeEEEecchhhcc-----ccCCccEEEehhhhC
Confidence 799999999986434568999999999999999999998873 5889999998752 135899999998665
Q ss_pred CHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEecc
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYY 161 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s~~ 161 (341)
...+++.+.+.|++||.+++.. |.. .. .-+..+.++++..|....+.=++.
T Consensus 121 ~~~~~~~~~~~LkpgG~lvi~~-------~~~---------------------~~-~~~~~~~e~~~~~~~~~~~~~~~~ 171 (181)
T TIGR00138 121 LNVLLELTLNLLKVGGYFLAYK-------GKK---------------------YL-DEIEEAKRKCQVLGVEPLEVPPLT 171 (181)
T ss_pred HHHHHHHHHHhcCCCCEEEEEc-------CCC---------------------cH-HHHHHHHHhhhhcCceEeeccccC
Confidence 5567788889999999999732 221 11 122334477777877777777777
Q ss_pred cCCCCe
Q 019408 162 SYHGPV 167 (341)
Q Consensus 162 ~~~dhy 167 (341)
.|+.|.
T Consensus 172 ~~~~~~ 177 (181)
T TIGR00138 172 GPDRHL 177 (181)
T ss_pred CCceEE
Confidence 665444
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.1e-08 Score=92.90 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=71.6
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
+||||..++..+.+.+..+|+++|+|+.|++.+++|++.|+. +++++|+.+.+.... ..+||+|+.|| |
T Consensus 94 g~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~--------~~~~~D~~~~l~~~~--~~~fDlVv~NPPy 163 (251)
T TIGR03704 94 CCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG--------TVHEGDLYDALPTAL--RGRVDILAANAPY 163 (251)
T ss_pred cCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--------EEEEeechhhcchhc--CCCEeEEEECCCC
Confidence 589999999998764446899999999999999999998753 468899887664321 24799999999 5
Q ss_pred CCC-----------------------------HHHHHHHHHhcccCCEEEEE
Q 019408 80 GSD-----------------------------SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 gsp-----------------------------~~fld~al~~v~~gGlL~vt 102 (341)
-.. ..+++.|.+.|++||.+++.
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 311 13445667899999999984
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.4e-09 Score=90.61 Aligned_cols=91 Identities=27% Similarity=0.297 Sum_probs=72.1
Q ss_pred ccccHhHHHHhhhCCCC-EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAKAD-FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~-~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||||+.|+-.++. +.. +|+++|+|+.|++.+++|++.|+++ + +++++.|..+.+. ..+||+|+.+| |
T Consensus 40 ~G~G~i~~~la~~-~~~~~v~~vDi~~~a~~~a~~n~~~n~~~----~-v~~~~~d~~~~~~-----~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 40 CGSGVISLALAKR-GPDAKVTAVDINPDALELAKRNAERNGLE----N-VEVVQSDLFEALP-----DGKFDLIVSNPPF 108 (170)
T ss_dssp STTSHHHHHHHHT-STCEEEEEEESBHHHHHHHHHHHHHTTCT----T-EEEEESSTTTTCC-----TTCEEEEEE---S
T ss_pred CChHHHHHHHHHh-CCCCEEEEEcCCHHHHHHHHHHHHhcCcc----c-ccccccccccccc-----ccceeEEEEccch
Confidence 7999999999884 544 7999999999999999999999984 3 8899999875432 46899999999 4
Q ss_pred --CC------CHHHHHHHHHhcccCCEEEEEe
Q 019408 80 --GS------DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 --gs------p~~fld~al~~v~~gGlL~vt~ 103 (341)
|. ...|+..|-+.|++||.|.+..
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 21 1356778889999999997533
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-08 Score=90.83 Aligned_cols=92 Identities=20% Similarity=0.088 Sum_probs=74.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||+|..++.+++ .++.+|+++|+|+.+++.+++|++.+++ +++++++|+.+.+. ...||+|+.|| |
T Consensus 44 GcG~G~~~~~la~-~~~~~v~~vD~s~~~l~~a~~n~~~~~~------~~~~~~~d~~~~~~-----~~~fD~Vi~npPy 111 (223)
T PRK14967 44 CTGSGALAVAAAA-AGAGSVTAVDISRRAVRSARLNALLAGV------DVDVRRGDWARAVE-----FRPFDVVVSNPPY 111 (223)
T ss_pred cCCHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHhCC------eeEEEECchhhhcc-----CCCeeEEEECCCC
Confidence 3799999999988 4777999999999999999999998876 46788899876432 35799999997 6
Q ss_pred CCC------------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 80 GSD------------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gsp------------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
... ..+++.+.+.|++||.+.+...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 421 1256678899999999997543
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-07 Score=88.02 Aligned_cols=138 Identities=14% Similarity=0.175 Sum_probs=101.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|+.||-.|+...-.+|+++|+++++++.+++|+++|+++ ++++++++|...+...... ..||+|+..| |
T Consensus 53 aG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~----~ri~v~~~Di~~~~~~~~~--~~fD~Ii~NPPyf 126 (248)
T COG4123 53 AGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE----ERIQVIEADIKEFLKALVF--ASFDLIICNPPYF 126 (248)
T ss_pred CCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch----hceeEehhhHHHhhhcccc--cccCEEEeCCCCC
Confidence 799999999998424478999999999999999999999985 7899999999999876532 3699999999 4
Q ss_pred CCCH--------------------HHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHH
Q 019408 80 GSDS--------------------SFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRML 139 (341)
Q Consensus 80 gsp~--------------------~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~l 139 (341)
.... .++..|-++|++||.|++... .| -
T Consensus 127 ~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r---------------------------~e-----r 174 (248)
T COG4123 127 KQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR---------------------------PE-----R 174 (248)
T ss_pred CCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec---------------------------HH-----H
Confidence 2211 234577789999999998432 11 2
Q ss_pred HHHHHHHHHhcCC---cEEEEEecccCCCCeEEEEEEEEeCcc
Q 019408 140 IGGAVREASAQGY---HVSPLFSYYSYHGPVFRVMLRVHRKAL 179 (341)
Q Consensus 140 l~~i~~~Aa~~~~---~i~Pl~s~~~~~dhy~Rv~vrv~~~~~ 179 (341)
+..+...+.+++. .++.+...- ..-.-||.++..++..
T Consensus 175 l~ei~~~l~~~~~~~k~i~~V~p~~--~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 175 LAEIIELLKSYNLEPKRIQFVYPKI--GKAANRVLVEAIKGGK 215 (248)
T ss_pred HHHHHHHHHhcCCCceEEEEecCCC--CCcceEEEEEEecCCC
Confidence 3344455556554 444444444 5566788888877665
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.3e-08 Score=99.92 Aligned_cols=95 Identities=14% Similarity=0.177 Sum_probs=75.3
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
+||||..++..+.. + .+|+++|+|+.+++.+++|++.|++. ++++.++|+.+.+.........||+|++|| |
T Consensus 305 gcGtG~~sl~la~~-~-~~V~gvD~s~~al~~A~~n~~~~~~~-----~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr 377 (443)
T PRK13168 305 FCGLGNFTLPLARQ-A-AEVVGVEGVEAMVERARENARRNGLD-----NVTFYHANLEEDFTDQPWALGGFDKVLLDPPR 377 (443)
T ss_pred eccCCHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEEeChHHhhhhhhhhcCCCCEEEECcCC
Confidence 58999999998873 4 68999999999999999999999883 588999999987643222234799999999 5
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
....+.+ .++..++++++++|+|
T Consensus 378 ~g~~~~~-~~l~~~~~~~ivyvSC 400 (443)
T PRK13168 378 AGAAEVM-QALAKLGPKRIVYVSC 400 (443)
T ss_pred cChHHHH-HHHHhcCCCeEEEEEe
Confidence 4344555 4555578999999955
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.80 E-value=4e-08 Score=93.77 Aligned_cols=94 Identities=17% Similarity=0.127 Sum_probs=74.7
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||||..++..++.....+|+++|+|+.+++.+++|++.+++. ++++++++|+.+.+. +.+||+|+.|| |
T Consensus 129 G~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~----~~i~~~~~D~~~~~~-----~~~fD~Iv~NPPy 199 (284)
T TIGR03533 129 CTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE----DRVTLIQSDLFAALP-----GRKYDLIVSNPPY 199 (284)
T ss_pred eCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEECchhhccC-----CCCccEEEECCCC
Confidence 3899999999998633458999999999999999999999874 468899999876442 34799999998 6
Q ss_pred CCC----------------------------HHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSD----------------------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp----------------------------~~fld~al~~v~~gGlL~vt~ 103 (341)
... ..++..+.+.|++||.|+++.
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 431 123556678999999999743
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.1e-08 Score=94.27 Aligned_cols=92 Identities=13% Similarity=0.112 Sum_probs=73.3
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
+||+|.+++.+++ .+ .+|+++|+|+.+++.+++|++.|++. +++++++|+.+++... ...||+|++||
T Consensus 181 ~cG~G~~sl~la~-~~-~~V~gvD~s~~av~~A~~n~~~~~l~-----~v~~~~~D~~~~~~~~---~~~~D~Vv~dPPr 250 (315)
T PRK03522 181 FCGVGGFGLHCAT-PG-MQLTGIEISAEAIACAKQSAAELGLT-----NVQFQALDSTQFATAQ---GEVPDLVLVNPPR 250 (315)
T ss_pred cCCCCHHHHHHHh-cC-CEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEEcCHHHHHHhc---CCCCeEEEECCCC
Confidence 5899999999998 56 68999999999999999999999883 6889999999887432 24699999999
Q ss_pred CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
-|.. +-+-..+....++++++++|
T Consensus 251 ~G~~-~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 251 RGIG-KELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CCcc-HHHHHHHHHcCCCeEEEEEC
Confidence 2322 33334566677888999844
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.8e-08 Score=86.32 Aligned_cols=94 Identities=18% Similarity=0.190 Sum_probs=76.8
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC-
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF- 79 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy- 79 (341)
||||.+++.+++..+ ..+|+++|+|+.+++.+++|++.+++. ++++++++|+.+++... ...||.|++...
T Consensus 49 ~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~----~~v~~~~~d~~~~l~~~---~~~~D~V~~~~~~ 121 (198)
T PRK00377 49 CGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL----NNIVLIKGEAPEILFTI---NEKFDRIFIGGGS 121 (198)
T ss_pred CcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC----CCeEEEEechhhhHhhc---CCCCCEEEECCCc
Confidence 799999999987533 468999999999999999999999853 46788899998876543 247999999762
Q ss_pred CCCHHHHHHHHHhcccCCEEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt 102 (341)
..+..+++.+.+.|++||.+++.
T Consensus 122 ~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 122 EKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred ccHHHHHHHHHHHcCCCcEEEEE
Confidence 23457888999999999999873
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.8e-08 Score=98.30 Aligned_cols=94 Identities=16% Similarity=0.191 Sum_probs=78.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC-
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF- 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy- 79 (341)
|||.|.+||..|. .+.+|+.+|++++|++.+++|++.|++. ++++..+||.+++.... .+..||.|++||-
T Consensus 301 YCGvG~f~l~lA~--~~~~V~gvEi~~~aV~~A~~NA~~n~i~-----N~~f~~~~ae~~~~~~~-~~~~~d~VvvDPPR 372 (432)
T COG2265 301 YCGVGTFGLPLAK--RVKKVHGVEISPEAVEAAQENAAANGID-----NVEFIAGDAEEFTPAWW-EGYKPDVVVVDPPR 372 (432)
T ss_pred ccCCChhhhhhcc--cCCEEEEEecCHHHHHHHHHHHHHcCCC-----cEEEEeCCHHHHhhhcc-ccCCCCEEEECCCC
Confidence 6999999999995 6789999999999999999999999994 58899999999987653 4568999999994
Q ss_pred -CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 -GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 -gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
|-...+++ .+..+++..+++|+|
T Consensus 373 ~G~~~~~lk-~l~~~~p~~IvYVSC 396 (432)
T COG2265 373 AGADREVLK-QLAKLKPKRIVYVSC 396 (432)
T ss_pred CCCCHHHHH-HHHhcCCCcEEEEeC
Confidence 32334554 455678889999955
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-07 Score=89.85 Aligned_cols=94 Identities=24% Similarity=0.321 Sum_probs=74.2
Q ss_pred CccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
+||+|..++.++...+ ...|+++|+|+..++.+++|++.+++. .+++++.|+..+... ...||+|++||
T Consensus 79 ~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-----~v~~~~~D~~~~~~~----~~~fD~Vl~D~P 149 (264)
T TIGR00446 79 AAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-----NVAVTNFDGRVFGAA----VPKFDAILLDAP 149 (264)
T ss_pred CCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-----cEEEecCCHHHhhhh----ccCCCEEEEcCC
Confidence 5899999998876432 358999999999999999999999883 588899999765321 23599999998
Q ss_pred -CCC------C------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGS------D------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygs------p------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
.|+ | ...++.|++.|++||.|.. +|
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvY-st 199 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVY-ST 199 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE-Ee
Confidence 332 0 1366788999999999874 66
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.2e-08 Score=93.06 Aligned_cols=92 Identities=18% Similarity=0.129 Sum_probs=74.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|||..++..+++....+|+++|+|+.|++.+++|++.+++. ++++++++|+.+.+. ..+||+|+.|| |.
T Consensus 142 ~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~----~~i~~~~~D~~~~l~-----~~~fDlIvsNPPyi 212 (307)
T PRK11805 142 TGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE----DRVTLIESDLFAALP-----GRRYDLIVSNPPYV 212 (307)
T ss_pred chhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----CcEEEEECchhhhCC-----CCCccEEEECCCCC
Confidence 799999999998644568999999999999999999999874 468899999876542 24799999998 64
Q ss_pred CC----------------------------HHHHHHHHHhcccCCEEEEE
Q 019408 81 SD----------------------------SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp----------------------------~~fld~al~~v~~gGlL~vt 102 (341)
.. ..++..+.+.|++||.|+++
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 21 13355777889999999984
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=90.42 Aligned_cols=99 Identities=22% Similarity=0.263 Sum_probs=75.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC---C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---S 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---P 78 (341)
+|+|..+.++++..++.+|+++|+|+..++++++++...+....+..+++++.+|+.+++.. ..++||+|++| |
T Consensus 85 ~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yDvIi~D~~dp 161 (283)
T PRK00811 85 GGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFDVIIVDSTDP 161 (283)
T ss_pred cCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCcccEEEECCCCC
Confidence 57888888887745788999999999999999999875321100124788999999999875 24689999997 4
Q ss_pred CCCC-----HHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGSD-----SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp-----~~fld~al~~v~~gGlL~vt~ 103 (341)
++.+ ..|+..+-+.|++||++++..
T Consensus 162 ~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 162 VGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred CCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 5433 356777889999999998743
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.2e-08 Score=77.56 Aligned_cols=94 Identities=19% Similarity=0.113 Sum_probs=73.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF-G 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy-g 80 (341)
||+|..++.+++.....+|+++|+|+++++.+++|+...+.. .+++++++|+ .... ....+||+|+++-| .
T Consensus 10 cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~i~~~~~d~-~~~~---~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 10 CGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS----DRITFVQGDA-EFDP---DFLEPFDLVICSGFTL 81 (112)
T ss_dssp TTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT----TTEEEEESCC-HGGT---TTSSCEEEEEECSGSG
T ss_pred CcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC----CCeEEEECcc-ccCc---ccCCCCCEEEECCCcc
Confidence 799999999998534456999999999999999999766653 6889999999 3322 23457999999882 1
Q ss_pred --CC-----HHHHHHHHHhcccCCEEEEEe
Q 019408 81 --SD-----SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 --sp-----~~fld~al~~v~~gGlL~vt~ 103 (341)
.. ..+++.+.+.|++||+|.++.
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 11 234778889999999999864
|
... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=77.71 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=76.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.+|+|..++.++++.+..+|+++|+|+.+++.+++|++.+++. ++++...|+...+... ..+||+|+++. .
T Consensus 27 G~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~D~v~~~~~~ 98 (124)
T TIGR02469 27 GAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-----NIVIVEGDAPEALEDS---LPEPDRVFIGGSG 98 (124)
T ss_pred CCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-----ceEEEeccccccChhh---cCCCCEEEECCcc
Confidence 3799999999998644578999999999999999999988773 5778888887544322 24799999985 3
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
.....+++.+.+.+++||.++++.
T Consensus 99 ~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 99 GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 333467889999999999999753
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-07 Score=84.08 Aligned_cols=94 Identities=19% Similarity=0.196 Sum_probs=80.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||..+|+++.-.-..+|+++|.++++++++++|++.+++ ++++++.+||-+.|... ..||.||+-==+.
T Consensus 43 aGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-----~n~~vv~g~Ap~~L~~~----~~~daiFIGGg~~ 113 (187)
T COG2242 43 AGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-----DNLEVVEGDAPEALPDL----PSPDAIFIGGGGN 113 (187)
T ss_pred CCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----CcEEEEeccchHhhcCC----CCCCEEEECCCCC
Confidence 79999999999632357899999999999999999999997 47899999999998743 2699999986454
Q ss_pred CHHHHHHHHHhcccCCEEEEEec
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~T 104 (341)
-...++.+...|++||-|.+++.
T Consensus 114 i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 114 IEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred HHHHHHHHHHHcCcCCeEEEEee
Confidence 55778899999999999998773
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.7e-08 Score=90.09 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=61.7
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCC--CCC--CccEEEEeccHHHHHHHhhhcCCcccEEEe
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERG--SGD--EKRWVVTHFDANRVLSECYLKREFFDLIDI 76 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~--~~~--~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl 76 (341)
|||+|.-|+++++ +|++ |+++|.|+.+..++++|++..... .+. ..+++++++|+.++|... ...||+|++
T Consensus 96 TAGlG~Da~~las-~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~---~~~fDVVYl 170 (250)
T PRK10742 96 TAGLGRDAFVLAS-VGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI---TPRPQVVYL 170 (250)
T ss_pred CCCccHHHHHHHH-cCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC---CCCCcEEEE
Confidence 6999999999999 7988 999999999999999999974110 000 035889999999999864 337999999
Q ss_pred CC-CCC
Q 019408 77 DS-FGS 81 (341)
Q Consensus 77 DP-ygs 81 (341)
|| |-.
T Consensus 171 DPMfp~ 176 (250)
T PRK10742 171 DPMFPH 176 (250)
T ss_pred CCCCCC
Confidence 99 643
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=88.96 Aligned_cols=95 Identities=21% Similarity=0.234 Sum_probs=76.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|+|..+...+......+|+++|+|++.++.+++++..++.. .+++++.+|+.+++... ..+||+|++|.|..
T Consensus 75 ~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~----~rv~v~~~Da~~~l~~~---~~~yD~I~~D~~~~ 147 (262)
T PRK04457 75 LGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG----ERFEVIEADGAEYIAVH---RHSTDVILVDGFDG 147 (262)
T ss_pred CCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC----CceEEEECCHHHHHHhC---CCCCCEEEEeCCCC
Confidence 478887776665444568999999999999999998765432 47889999999998753 35799999998753
Q ss_pred C--------HHHHHHHHHhcccCCEEEEEe
Q 019408 82 D--------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p--------~~fld~al~~v~~gGlL~vt~ 103 (341)
. ..|+..+.+.|++||+|.+..
T Consensus 148 ~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 148 EGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 2 588899999999999999853
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.1e-08 Score=93.88 Aligned_cols=90 Identities=19% Similarity=0.125 Sum_probs=67.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|||++||-+++ .||.+|+++|+||.|++..++|+++|++. ...++...+..... .+++||+|+-.=...
T Consensus 171 cGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~v~----~~~~~~~~~~~~~~-----~~~~~DvIVANILA~ 240 (300)
T COG2264 171 CGSGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARLNGVE----LLVQAKGFLLLEVP-----ENGPFDVIVANILAE 240 (300)
T ss_pred CChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHHcCCc----hhhhcccccchhhc-----ccCcccEEEehhhHH
Confidence 799999999999 89999999999999999999999999984 11222222222222 235899997654322
Q ss_pred -CHHHHHHHHHhcccCCEEEE
Q 019408 82 -DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 -p~~fld~al~~v~~gGlL~v 101 (341)
-..+.+...+.+++||+|++
T Consensus 241 vl~~La~~~~~~lkpgg~lIl 261 (300)
T COG2264 241 VLVELAPDIKRLLKPGGRLIL 261 (300)
T ss_pred HHHHHHHHHHHHcCCCceEEE
Confidence 23556677889999999997
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-07 Score=84.76 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=78.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||+|..++.++......+|+++|+|+++++.+++|++.++++ .+++.++|+.++. . .++||+|+.+-++.
T Consensus 54 cGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-----~i~~~~~d~~~~~----~-~~~fDlV~~~~~~~ 123 (187)
T PRK00107 54 SGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-----NVTVVHGRAEEFG----Q-EEKFDVVTSRAVAS 123 (187)
T ss_pred CCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-----CEEEEeccHhhCC----C-CCCccEEEEccccC
Confidence 799999999987645568999999999999999999999884 4889999997742 1 45899999988776
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
+..++..+.+.|++||.+++-
T Consensus 124 ~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 124 LSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred HHHHHHHHHHhcCCCeEEEEE
Confidence 778889999999999999974
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-07 Score=89.28 Aligned_cols=94 Identities=17% Similarity=0.110 Sum_probs=73.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.+|||..++..+.+....+|+++|+|+.|++.+++|++.+++. +++++.++|+.+.+. +.+||+|+.+| |
T Consensus 122 G~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~----~~v~~~~~d~~~~~~-----~~~fDlIvsNPPy 192 (284)
T TIGR00536 122 GTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE----HRVEFIQSNLFEPLA-----GQKIDIIVSNPPY 192 (284)
T ss_pred eccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEECchhccCc-----CCCccEEEECCCC
Confidence 3899999999998643358999999999999999999999874 458899999876431 23799999998 6
Q ss_pred CCCH----------------------------HHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDS----------------------------SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~----------------------------~fld~al~~v~~gGlL~vt~ 103 (341)
-... .++..+.+.|++||+|.++-
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 4321 23456677899999998744
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-07 Score=94.95 Aligned_cols=95 Identities=24% Similarity=0.243 Sum_probs=76.1
Q ss_pred CccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
.||+|..++.++... +..+|+++|+|+.+++.+++|++.+++. .++++++|+..++... .+.||+|++||
T Consensus 258 gaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-----~v~~~~~D~~~~~~~~---~~~fD~Vl~D~P 329 (444)
T PRK14902 258 CAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-----NIETKALDARKVHEKF---AEKFDKILVDAP 329 (444)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEeCCcccccchh---cccCCEEEEcCC
Confidence 489999999998753 3568999999999999999999999884 4889999998764322 14799999998
Q ss_pred -CCC------C------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGS------D------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygs------p------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
+|. | ..+++.|.+.|++||.|.. +|
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy-st 379 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVY-ST 379 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE-Ec
Confidence 222 0 1357788999999999985 55
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-07 Score=94.36 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=75.4
Q ss_pred CccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 1 fagsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
.||+|..++..+... +..+|+++|+|+..++.+++|++.+++. .++++++|+..+..........||.|++||.
T Consensus 260 ~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-----~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaP 334 (434)
T PRK14901 260 CAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-----SIKILAADSRNLLELKPQWRGYFDRILLDAP 334 (434)
T ss_pred CCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-----eEEEEeCChhhcccccccccccCCEEEEeCC
Confidence 489999999988753 3458999999999999999999999984 5889999998764221111347999999983
Q ss_pred --CC------C------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 80 --GS------D------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 --gs------p------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
|+ | ...++.|.+.|++||.|.. +|
T Consensus 335 CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvy-st 384 (434)
T PRK14901 335 CSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVY-AT 384 (434)
T ss_pred CCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE-Ee
Confidence 21 1 2446788999999998775 45
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.7e-07 Score=82.04 Aligned_cols=95 Identities=18% Similarity=0.096 Sum_probs=76.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
.||||..++.++......+|+++|+|+++++.+++|++.+++. +++++++|+.+.+... ...+|.|.+|...
T Consensus 48 G~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-----~v~~~~~d~~~~~~~~---~~~~d~v~~~~~~ 119 (196)
T PRK07402 48 GAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-----NVEVIEGSAPECLAQL---APAPDRVCIEGGR 119 (196)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----CeEEEECchHHHHhhC---CCCCCEEEEECCc
Confidence 4899999999986433468999999999999999999988873 5788999998765432 2357889998643
Q ss_pred CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~ 103 (341)
....+++.+.+.|++||.+.+..
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEe
Confidence 33477888899999999999854
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=85.64 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=79.8
Q ss_pred ccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcC--CcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKR--EFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~--~~fDvIdlDP 78 (341)
+++|.=+|..|... .-.+|+.+|+|++-.+.+++|++..++. ++++++.+||.++|.++...+ ..||+||+|-
T Consensus 54 t~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~----~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa 129 (205)
T PF01596_consen 54 TFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD----DRIEVIEGDALEVLPELANDGEEGQFDFVFIDA 129 (205)
T ss_dssp TTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG----GGEEEEES-HHHHHHHHHHTTTTTSEEEEEEES
T ss_pred cccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC----CcEEEEEeccHhhHHHHHhccCCCceeEEEEcc
Confidence 46788888888752 2358999999999999999999999885 789999999999998875443 3799999997
Q ss_pred C-CCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 F-GSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 y-gsp~~fld~al~~v~~gGlL~vt~T 104 (341)
- ..-..|++.++++|++||+|++--+
T Consensus 130 ~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 130 DKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp TGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred cccchhhHHHHHhhhccCCeEEEEccc
Confidence 2 1123678899999999999997543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.7e-08 Score=83.95 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=56.3
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||.|.-.|-+|+. .++|+++|+|+.-++.+++|++.-|+. ++++++++|+++++...... ..||+|++|| .
T Consensus 7 fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~----~~I~~i~gD~~~~~~~~~~~-~~~D~vFlSPPW 79 (163)
T PF09445_consen 7 FCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVA----DNIDFICGDFFELLKRLKSN-KIFDVVFLSPPW 79 (163)
T ss_dssp T-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-G----GGEEEEES-HHHHGGGB-------SEEEE---B
T ss_pred ccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEeCCHHHHHhhcccc-ccccEEEECCCC
Confidence 79999999999984 578999999999999999999999985 78999999999988765322 2289999999 7
Q ss_pred CCC
Q 019408 80 GSD 82 (341)
Q Consensus 80 gsp 82 (341)
|-|
T Consensus 80 GGp 82 (163)
T PF09445_consen 80 GGP 82 (163)
T ss_dssp SSG
T ss_pred CCc
Confidence 765
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-07 Score=91.43 Aligned_cols=93 Identities=20% Similarity=0.198 Sum_probs=74.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||...++++. .| .+|+++|+|+.+++..++|++.+++. .+++.++|+.++- .....||+|+.|| |
T Consensus 190 ~cGtG~~lieaa~-~~-~~v~g~Di~~~~~~~a~~nl~~~g~~-----~i~~~~~D~~~l~----~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 190 FCGTGGFLIEAGL-MG-AKVIGCDIDWKMVAGARINLEHYGIE-----DFFVKRGDATKLP----LSSESVDAIATDPPY 258 (329)
T ss_pred CCCCCHHHHHHHH-hC-CeEEEEcCCHHHHHHHHHHHHHhCCC-----CCeEEecchhcCC----cccCCCCEEEECCCC
Confidence 7999999999887 55 46999999999999999999998884 3778899998642 1235899999998 8
Q ss_pred CCC------------HHHHHHHHHhcccCCEEEEEec
Q 019408 80 GSD------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gsp------------~~fld~al~~v~~gGlL~vt~T 104 (341)
|.. ..+++.+.+.+++||.+++..+
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 742 2456677889999999987443
|
This family is found exclusively in the Archaea. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.4e-07 Score=82.52 Aligned_cols=91 Identities=22% Similarity=0.119 Sum_probs=73.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||||..++.+++.....+|+++|+|+.+++.+++|++.+++. ++++.++|+...+ ...||+|+++- .+
T Consensus 40 ~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-----~i~~~~~d~~~~~------~~~~D~v~~~~~~~ 108 (187)
T PRK08287 40 AGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-----NIDIIPGEAPIEL------PGKADAIFIGGSGG 108 (187)
T ss_pred CcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----CeEEEecCchhhc------CcCCCEEEECCCcc
Confidence 799999999998533468999999999999999999988873 5788889975322 24799999986 33
Q ss_pred CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~ 103 (341)
....+++.+.+.|++||.+.+..
T Consensus 109 ~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 109 NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEE
Confidence 34567888999999999998743
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.4e-07 Score=82.02 Aligned_cols=88 Identities=20% Similarity=0.222 Sum_probs=71.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++.++. .+. +|+++|+|+.+++.+++|++.+++ .+++.++|+.+.+ ..+||+|+.+| |.
T Consensus 28 ~G~G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~------~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 28 AGTGLVAIRLKG-KGK-CILTTDINPFAVKELRENAKLNNV------GLDVVMTDLFKGV------RGKFDVILFNPPYL 93 (179)
T ss_pred CChhHHHHHHHh-cCC-EEEEEECCHHHHHHHHHHHHHcCC------ceEEEEccccccc------CCcccEEEECCCCC
Confidence 799999999987 566 899999999999999999998876 4678899986643 23799999997 63
Q ss_pred CC------------------------HHHHHHHHHhcccCCEEEEEe
Q 019408 81 SD------------------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp------------------------~~fld~al~~v~~gGlL~vt~ 103 (341)
.. ..|++.+.+.|++||.+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 21 135777889999999988744
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.2e-07 Score=91.04 Aligned_cols=95 Identities=17% Similarity=0.243 Sum_probs=74.3
Q ss_pred CccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
.||+|..++..+... +..+|+++|+|+..++.+++|++..++. .+++.+.|+..+.... .+.||.|++||
T Consensus 245 cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-----~v~~~~~Da~~l~~~~---~~~fD~Vl~DaP 316 (431)
T PRK14903 245 CAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-----SIEIKIADAERLTEYV---QDTFDRILVDAP 316 (431)
T ss_pred CCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----eEEEEECchhhhhhhh---hccCCEEEECCC
Confidence 489999998887642 3468999999999999999999999883 5788999998764221 34799999998
Q ss_pred ---CCC----C------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 79 ---FGS----D------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 ---ygs----p------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
+|. | ...++.+.+.|++||.|.. +|
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvY-sT 366 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLY-ST 366 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE-EE
Confidence 232 1 1236688899999999876 66
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3e-07 Score=91.08 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=73.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|+.|+.+++.....+|+++|+|+.|++..++|++.|+.. ...++++...|+...+ .+.+||+|+.+| |.
T Consensus 237 CGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~~~~~D~l~~~-----~~~~fDlIlsNPPfh 309 (378)
T PRK15001 237 CGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSGV-----EPFRFNAVLCNPPFH 309 (378)
T ss_pred ccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEEEEEccccccC-----CCCCEEEEEECcCcc
Confidence 799999999998533468999999999999999999998752 0135778888886432 234799999998 63
Q ss_pred CC--------HHHHHHHHHhcccCCEEEEEe
Q 019408 81 SD--------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp--------~~fld~al~~v~~gGlL~vt~ 103 (341)
.- ..++..+.+.|++||.|++..
T Consensus 310 ~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 310 QQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 21 245677889999999999854
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.2e-07 Score=90.84 Aligned_cols=95 Identities=22% Similarity=0.185 Sum_probs=74.0
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||+|..++..+...+..+|+++|+|+..++.+++|++.+++ .++++++|+...... .....||.|++|| +
T Consensus 252 gaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~------~~~~~~~D~~~~~~~--~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 252 CAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL------KATVIVGDARDPAQW--WDGQPFDRILLDAPC 323 (427)
T ss_pred CCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEcCcccchhh--cccCCCCEEEECCCC
Confidence 489999999998743236899999999999999999999887 256889999865321 1235799999999 3
Q ss_pred -CC--------------C----------HHHHHHHHHhcccCCEEEEEec
Q 019408 80 -GS--------------D----------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 -gs--------------p----------~~fld~al~~v~~gGlL~vt~T 104 (341)
++ + ..+++.|.+.|++||.|.. +|
T Consensus 324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvy-st 372 (427)
T PRK10901 324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLY-AT 372 (427)
T ss_pred CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE-Ee
Confidence 21 0 1467788999999999986 55
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.7e-07 Score=87.03 Aligned_cols=92 Identities=22% Similarity=0.171 Sum_probs=71.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|||..+|..+++.....|+++|+|++|++++++|++.|++. ++.+++.|.+.-+. .+||+|+-.| |-
T Consensus 119 TGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~-----~~~~~~~dlf~~~~------~~fDlIVsNPPYi 187 (280)
T COG2890 119 TGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLV-----RVLVVQSDLFEPLR------GKFDLIVSNPPYI 187 (280)
T ss_pred CChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCc-----cEEEEeeecccccC------CceeEEEeCCCCC
Confidence 799999999999755568999999999999999999999973 45556667775443 2899999998 75
Q ss_pred CCH----------------------------HHHHHHHHhcccCCEEEEEec
Q 019408 81 SDS----------------------------SFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 sp~----------------------------~fld~al~~v~~gGlL~vt~T 104 (341)
... .|++.+-+.+++||++.+...
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 322 122355677889999998653
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.7e-08 Score=93.21 Aligned_cols=86 Identities=22% Similarity=0.190 Sum_probs=63.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe-ccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH-FDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~-~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+|||++||-+++ .||++|+++|+||.|++..++|+++|++. +++.+.. .|. ...+||+|.-.=..
T Consensus 170 ~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~~~----~~~~v~~~~~~---------~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 170 CGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNGVE----DRIEVSLSEDL---------VEGKFDLVVANILA 235 (295)
T ss_dssp -TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT-T----TCEEESCTSCT---------CCS-EEEEEEES-H
T ss_pred CcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcCCC----eeEEEEEeccc---------ccccCCEEEECCCH
Confidence 799999999999 79999999999999999999999999995 4555431 121 12689999876533
Q ss_pred CC-HHHHHHHHHhcccCCEEEE
Q 019408 81 SD-SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 81 sp-~~fld~al~~v~~gGlL~v 101 (341)
.+ ...++...+.+++||+|.+
T Consensus 236 ~vL~~l~~~~~~~l~~~G~lIl 257 (295)
T PF06325_consen 236 DVLLELAPDIASLLKPGGYLIL 257 (295)
T ss_dssp HHHHHHHHHCHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCEEEE
Confidence 21 1233444578999999998
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.7e-07 Score=91.04 Aligned_cols=93 Identities=18% Similarity=0.106 Sum_probs=73.8
Q ss_pred CccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
.||+|..++..+.. .+..+|+++|+|+..++.+++|++.+++. .+++.++|+..+. ....||+|++||
T Consensus 258 gaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-----~v~~~~~Da~~~~-----~~~~fD~Vl~D~P 327 (445)
T PRK14904 258 CAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-----IIETIEGDARSFS-----PEEQPDAILLDAP 327 (445)
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-----eEEEEeCcccccc-----cCCCCCEEEEcCC
Confidence 48999998877653 23458999999999999999999999883 6788999998764 235799999997
Q ss_pred C-CC------C------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 79 F-GS------D------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 y-gs------p------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
+ |+ | ..+++.+.+.|++||.|.. +|
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvy-st 377 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVY-AT 377 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE-Ee
Confidence 2 21 1 1357788899999999997 66
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.7e-07 Score=83.07 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=78.3
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc---CCcccEEEeC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK---REFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~---~~~fDvIdlD 77 (341)
.++|.-+|..|+..+ -.+|+.+|.+++..+..++|++..++. ++++++.+||.+.|.++... ...||+||+|
T Consensus 88 T~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~----~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiD 163 (247)
T PLN02589 88 VYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA----HKIDFREGPALPVLDQMIEDGKYHGTFDFIFVD 163 (247)
T ss_pred ChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC----CceEEEeccHHHHHHHHHhccccCCcccEEEec
Confidence 367888888876422 248999999999999999999999985 68999999999999886433 2589999999
Q ss_pred CC-CCCHHHHHHHHHhcccCCEEEE
Q 019408 78 SF-GSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 78 Py-gsp~~fld~al~~v~~gGlL~v 101 (341)
-- ..-..|++.++++|++||+|++
T Consensus 164 adK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 164 ADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred CCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 72 2223788999999999999986
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.6e-07 Score=86.60 Aligned_cols=90 Identities=21% Similarity=0.159 Sum_probs=70.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||+.++.+++ .|+.+|+++|+|+.+++.+++|++.|++. ..+.+...|... ....+||+|+.+....
T Consensus 168 cGsG~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~----~~~~~~~~~~~~------~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 168 CGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVS----DRLQVKLIYLEQ------PIEGKADVIVANILAE 236 (288)
T ss_pred CChhHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCC----cceEEEeccccc------ccCCCceEEEEecCHH
Confidence 799999999887 78889999999999999999999999884 455666665221 1135799999987432
Q ss_pred C-HHHHHHHHHhcccCCEEEEE
Q 019408 82 D-SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p-~~fld~al~~v~~gGlL~vt 102 (341)
. ..++..+.+.|++||.|.+.
T Consensus 237 ~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 237 VIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred HHHHHHHHHHHHcCCCcEEEEE
Confidence 2 24566778999999999974
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.1e-07 Score=82.39 Aligned_cols=92 Identities=21% Similarity=0.138 Sum_probs=74.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++.++......+|+++|+|+.+++.+++|++.+++. ++++.++|+...+ ..++||+|+.+| |.
T Consensus 96 ~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-----~~~~~~~d~~~~~-----~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 96 TGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-----NVTFLQSDWFEPL-----PGGKFDLIVSNPPYI 165 (251)
T ss_pred CcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----eEEEEECchhccC-----cCCceeEEEECCCCC
Confidence 799999999998644458999999999999999999998873 5788999987643 235899999998 65
Q ss_pred CC-----------------------------HHHHHHHHHhcccCCEEEEEe
Q 019408 81 SD-----------------------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp-----------------------------~~fld~al~~v~~gGlL~vt~ 103 (341)
.. ..++..+.+.|++||.+++..
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 31 134567788999999999854
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.3e-07 Score=92.14 Aligned_cols=92 Identities=22% Similarity=0.216 Sum_probs=72.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|||..++..+++....+|+++|+|+.|++.+++|++.+++. ++++++++|+...+. ..+||+|+.+| |.
T Consensus 147 ~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~----~~v~~~~~D~~~~~~-----~~~fDlIvsNPPYi 217 (506)
T PRK01544 147 TGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT----DRIQIIHSNWFENIE-----KQKFDFIVSNPPYI 217 (506)
T ss_pred CchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc----cceeeeecchhhhCc-----CCCccEEEECCCCC
Confidence 799999999988644568999999999999999999999874 468889999875431 34799999998 65
Q ss_pred CCHH-----------------------------HHHHHHHhcccCCEEEEE
Q 019408 81 SDSS-----------------------------FLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp~~-----------------------------fld~al~~v~~gGlL~vt 102 (341)
.... +++.+-+.|++||.|.+.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 3211 223555789999999884
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=80.28 Aligned_cols=94 Identities=20% Similarity=0.215 Sum_probs=77.1
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe-ccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH-FDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~-~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
++.|.=+|..|.+.. -.++|.+|+|++-.+.+++|++.-++. ++++++. +|+.+.|.. .....||+||+|-
T Consensus 68 T~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~----~~i~~~~~gdal~~l~~--~~~~~fDliFIDad 141 (219)
T COG4122 68 TAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD----DRIELLLGGDALDVLSR--LLDGSFDLVFIDAD 141 (219)
T ss_pred cccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc----ceEEEEecCcHHHHHHh--ccCCCccEEEEeCC
Confidence 367888899998733 458999999999999999999999985 5677777 699999986 2246899999996
Q ss_pred CCCCHHHHHHHHHhcccCCEEEE
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~v 101 (341)
=+.-.+|++.++++|++||++.+
T Consensus 142 K~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 142 KADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred hhhCHHHHHHHHHHhCCCcEEEE
Confidence 11112899999999999999996
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.4e-07 Score=88.90 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=73.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++.+++.....+|+++|+|+.|++.+++|++.|++. .++...|+...+ .++||+|+.+| |.
T Consensus 205 CG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~------~~~~~~D~~~~~------~~~fDlIvsNPPFH 272 (342)
T PRK09489 205 CGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE------GEVFASNVFSDI------KGRFDMIISNPPFH 272 (342)
T ss_pred cCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------CEEEEccccccc------CCCccEEEECCCcc
Confidence 799999999988533357999999999999999999999873 356777875422 35799999998 64
Q ss_pred C--------CHHHHHHHHHhcccCCEEEEEec
Q 019408 81 S--------DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 s--------p~~fld~al~~v~~gGlL~vt~T 104 (341)
. ...|+..+.+.|++||.|.+.+.
T Consensus 273 ~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 273 DGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 3 24677888999999999998664
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.2e-07 Score=78.88 Aligned_cols=95 Identities=19% Similarity=0.282 Sum_probs=76.1
Q ss_pred ccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 2 CGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
||+|..++.++.+ ....+++.+|+|+++++.++++++.++++ ++++.++|+.+ +... .. +.||+|+.++
T Consensus 12 cG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-----ni~~~~~d~~~-l~~~-~~-~~~D~I~~~~~l 83 (152)
T PF13847_consen 12 CGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-----NIEFIQGDIED-LPQE-LE-EKFDIIISNGVL 83 (152)
T ss_dssp -TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-----TEEEEESBTTC-GCGC-SS-TTEEEEEEESTG
T ss_pred CcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-----ccceEEeehhc-cccc-cC-CCeeEEEEcCch
Confidence 7999999999954 33567999999999999999999999883 78999999988 5432 11 5899999987
Q ss_pred --CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 --FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 --ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+..++..+.+.++++|.++++..
T Consensus 84 ~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 84 HHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp GGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 33344568889999999999998553
|
... |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-06 Score=77.85 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=74.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe---CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI---DS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl---DP 78 (341)
||+|..++..+......+|+++|+|+++++.+++|++.+++. +++++++|+...+... .....||+|++ ||
T Consensus 49 cGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-----~v~~~~~d~~~~l~~~-~~~~~~D~V~~~~~~p 122 (202)
T PRK00121 49 FGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-----NLRLLCGDAVEVLLDM-FPDGSLDRIYLNFPDP 122 (202)
T ss_pred cCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-----CEEEEecCHHHHHHHH-cCccccceEEEECCCC
Confidence 799999998876423357999999999999999999988763 6889999994444322 12457999988 66
Q ss_pred CCC---------CHHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGS---------DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygs---------p~~fld~al~~v~~gGlL~vt~ 103 (341)
+.. ...++..+.+.|++||.+.+++
T Consensus 123 ~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 123 WPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 532 2368889999999999999843
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-06 Score=88.29 Aligned_cols=99 Identities=24% Similarity=0.189 Sum_probs=74.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCC--CCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERG--SGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~--~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+|+|....+.++..++++|+++|+|++.++..++|..+..+. .-++.+++++++|+++++... +++||+|++|+.
T Consensus 306 ~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~---~~~fDvIi~D~~ 382 (521)
T PRK03612 306 GGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL---AEKFDVIIVDLP 382 (521)
T ss_pred CCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---CCCCCEEEEeCC
Confidence 588998888877434589999999999999999975432210 001246889999999998753 458999999973
Q ss_pred CC--C-------HHHHHHHHHhcccCCEEEEEe
Q 019408 80 GS--D-------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gs--p-------~~fld~al~~v~~gGlL~vt~ 103 (341)
-. + .+|++.+.+.|++||++.+.+
T Consensus 383 ~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 383 DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 21 1 247888899999999999854
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.6e-06 Score=77.91 Aligned_cols=99 Identities=15% Similarity=0.202 Sum_probs=78.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC---C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---S 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---P 78 (341)
||+|..++.++.......|+++|+++..++.+++|++.+++. +++++++|+.+++.... ....+|.|+++ |
T Consensus 25 cG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-----ni~~i~~d~~~~~~~~~-~~~~~d~v~~~~pdp 98 (194)
T TIGR00091 25 CGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-----NLHVLCGDANELLDKFF-PDGSLSKVFLNFPDP 98 (194)
T ss_pred CCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-----CEEEEccCHHHHHHhhC-CCCceeEEEEECCCc
Confidence 799999999998633457999999999999999999988873 68899999998875432 23479999875 5
Q ss_pred CCCC---------HHHHHHHHHhcccCCEEEEEecCCC
Q 019408 79 FGSD---------SSFLRTVFNAVKRDGLLYLTSTDGY 107 (341)
Q Consensus 79 ygsp---------~~fld~al~~v~~gGlL~vt~TD~~ 107 (341)
+-+. ..++..+.+.|++||.|.+ .||..
T Consensus 99 w~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~-~td~~ 135 (194)
T TIGR00091 99 WPKKRHNKRRITQPHFLKEYANVLKKGGVIHF-KTDNE 135 (194)
T ss_pred CCCCCccccccCCHHHHHHHHHHhCCCCEEEE-EeCCH
Confidence 3211 3688899999999999997 66553
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-06 Score=84.79 Aligned_cols=99 Identities=21% Similarity=0.171 Sum_probs=74.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC---C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---S 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---P 78 (341)
.|.|....++++..++.+|+++|+|++.++++++++..++-.. ++.+++++.+|++.+|... +++||+|++| |
T Consensus 112 gG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~-~dprv~v~~~Da~~~L~~~---~~~yDvIi~D~~dp 187 (336)
T PLN02823 112 GGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAF-CDKRLELIINDARAELEKR---DEKFDVIIGDLADP 187 (336)
T ss_pred CCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccc-cCCceEEEEChhHHHHhhC---CCCccEEEecCCCc
Confidence 3667766666664568899999999999999999987653100 1257899999999999643 4689999999 4
Q ss_pred C--CCC-----HHHHH-HHHHhcccCCEEEEEec
Q 019408 79 F--GSD-----SSFLR-TVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 y--gsp-----~~fld-~al~~v~~gGlL~vt~T 104 (341)
. +.| .+|++ .+.+.|++||++.+.++
T Consensus 188 ~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 188 VEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred cccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 2 212 25777 77889999999987554
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.2e-07 Score=84.78 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=75.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||-|+.||.+++...-.+|+++|+|..|+++.++|++.|+++ ..++...|.+.-.. .+||+|+..| |.
T Consensus 167 CG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-----~~~v~~s~~~~~v~------~kfd~IisNPPfh 235 (300)
T COG2813 167 CGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-----NTEVWASNLYEPVE------GKFDLIISNPPFH 235 (300)
T ss_pred CCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-----ccEEEEeccccccc------ccccEEEeCCCcc
Confidence 799999999999755678999999999999999999999984 22677877765432 3899999999 53
Q ss_pred C--C------HHHHHHHHHhcccCCEEEEEec
Q 019408 81 S--D------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 s--p------~~fld~al~~v~~gGlL~vt~T 104 (341)
. . ..++..|-+.|++||-|.+-+-
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 2 1 2567788999999999998664
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=87.51 Aligned_cols=70 Identities=17% Similarity=0.091 Sum_probs=56.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||||..++..+++....+|+++|+|+.+++.+++|++.++. ++++.++|.+.... ....+||+|+.+| |.
T Consensus 260 cGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~------rV~fi~gDl~e~~l---~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 260 TGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA------RVEFAHGSWFDTDM---PSEGKWDIIVSNPPYI 330 (423)
T ss_pred ChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------cEEEEEcchhcccc---ccCCCccEEEECCCCC
Confidence 79999999998865567899999999999999999998764 57889999865321 1124799999999 63
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-06 Score=77.07 Aligned_cols=95 Identities=22% Similarity=0.286 Sum_probs=66.4
Q ss_pred CccccHhHHHHhhh-CCCC--------EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcc
Q 019408 1 MCGCGIRSLRYLAE-AKAD--------FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFF 71 (341)
Q Consensus 1 fagsG~rgir~a~e-~ga~--------~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~f 71 (341)
|||||..-||++.. .+.. +++..|+|+++++..++|++..++. ..+.+.+.|+.++- .....+
T Consensus 36 ~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~----~~i~~~~~D~~~l~----~~~~~~ 107 (179)
T PF01170_consen 36 FCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE----DYIDFIQWDARELP----LPDGSV 107 (179)
T ss_dssp T-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C----GGEEEEE--GGGGG----GTTSBS
T ss_pred CCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC----CceEEEecchhhcc----cccCCC
Confidence 89999999999885 3333 3889999999999999999998884 57888999998764 223579
Q ss_pred cEEEeCC-CCCCH-----------HHHHHHHHhcccCCEEEEEec
Q 019408 72 DLIDIDS-FGSDS-----------SFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 72 DvIdlDP-ygsp~-----------~fld~al~~v~~gGlL~vt~T 104 (341)
|+|+.|| ||.-. .|++..-+.+++ ..+.++..
T Consensus 108 d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~ 151 (179)
T PF01170_consen 108 DAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTS 151 (179)
T ss_dssp CEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEES
T ss_pred CEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEEC
Confidence 9999999 98632 122343444555 66666554
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.8e-07 Score=82.53 Aligned_cols=84 Identities=19% Similarity=0.127 Sum_probs=66.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||+.++.+++ .|+.+|+++|+|+.+++.+++|++.|++. ..+.+..+|. .||+|+.+....
T Consensus 128 cGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~------------~fD~Vvani~~~ 190 (250)
T PRK00517 128 CGSGILAIAAAK-LGAKKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGDL------------KADVIVANILAN 190 (250)
T ss_pred CcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCCC------------CcCEEEEcCcHH
Confidence 799999998776 68888999999999999999999999873 3444444332 699999876332
Q ss_pred -CHHHHHHHHHhcccCCEEEEE
Q 019408 82 -DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 -p~~fld~al~~v~~gGlL~vt 102 (341)
...++..+.+.|++||.|+++
T Consensus 191 ~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEE
Confidence 224567788999999999985
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.41 E-value=8e-07 Score=87.39 Aligned_cols=93 Identities=23% Similarity=0.213 Sum_probs=62.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhh------------hcC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECY------------LKR 68 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~------------~~~ 68 (341)
|||+|.+||-.|. .+++|+++|+++.|++.+++|+++|+++ ++++++++|.++..... ...
T Consensus 204 ycG~G~fsl~la~--~~~~V~gvE~~~~av~~A~~Na~~N~i~-----n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 276 (352)
T PF05958_consen 204 YCGVGTFSLPLAK--KAKKVIGVEIVEEAVEDARENAKLNGID-----NVEFIRGDAEDFAKALAKAREFNRLKGIDLKS 276 (352)
T ss_dssp S-TTTCCHHHHHC--CSSEEEEEES-HHHHHHHHHHHHHTT-------SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGC
T ss_pred eecCCHHHHHHHh--hCCeEEEeeCCHHHHHHHHHHHHHcCCC-----cceEEEeeccchhHHHHhhHHHHhhhhhhhhh
Confidence 7999999999986 6789999999999999999999999994 78889988877643221 123
Q ss_pred CcccEEEeCCC--CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 69 EFFDLIDIDSF--GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 69 ~~fDvIdlDPy--gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
..+|+|++||- |-....++. ++.++ -+++|.|
T Consensus 277 ~~~d~vilDPPR~G~~~~~~~~-~~~~~--~ivYvSC 310 (352)
T PF05958_consen 277 FKFDAVILDPPRAGLDEKVIEL-IKKLK--RIVYVSC 310 (352)
T ss_dssp TTESEEEE---TT-SCHHHHHH-HHHSS--EEEEEES
T ss_pred cCCCEEEEcCCCCCchHHHHHH-HhcCC--eEEEEEC
Confidence 36899999993 322234443 44444 4888844
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.9e-06 Score=80.38 Aligned_cols=129 Identities=16% Similarity=0.075 Sum_probs=85.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHH---cCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS---IERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~---n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+|+|....+.++..++.+|+++|+|++.+++++++-.+ ++.. .++.+++++.+|+.+++... .++||+|++|+
T Consensus 159 gGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~-~~DpRV~vvi~Da~~fL~~~---~~~YDVIIvDl 234 (374)
T PRK01581 159 GGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSA-FFDNRVNVHVCDAKEFLSSP---SSLYDVIIIDF 234 (374)
T ss_pred CCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcccc-CCCCceEEEECcHHHHHHhc---CCCccEEEEcC
Confidence 46676444444424578999999999999999974221 2110 01357899999999999753 45799999996
Q ss_pred CC---CC------HHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHh
Q 019408 79 FG---SD------SSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASA 149 (341)
Q Consensus 79 yg---sp------~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~ 149 (341)
+- .+ .+|+..+.+.|++||++.+.+. + | ..+ +..+..+.+...+
T Consensus 235 ~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~-----s--------------p----~~~----~~~~~~i~~tL~~ 287 (374)
T PRK01581 235 PDPATELLSTLYTSELFARIATFLTEDGAFVCQSN-----S--------------P----ADA----PLVYWSIGNTIEH 287 (374)
T ss_pred CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC-----C--------------h----hhh----HHHHHHHHHHHHH
Confidence 32 11 3578888899999999987542 1 0 011 2344446666666
Q ss_pred cCCcEEEEEecc
Q 019408 150 QGYHVSPLFSYY 161 (341)
Q Consensus 150 ~~~~i~Pl~s~~ 161 (341)
.+....|...+.
T Consensus 288 af~~v~~y~t~v 299 (374)
T PRK01581 288 AGLTVKSYHTIV 299 (374)
T ss_pred hCCceEEEEEec
Confidence 677777766664
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.3e-07 Score=82.08 Aligned_cols=90 Identities=24% Similarity=0.235 Sum_probs=72.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC----
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---- 77 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---- 77 (341)
||-|+++...|. .| ..|+++|++++.++..+.-+..+++ .++..+..+.++... +++||||..=
T Consensus 68 CGgG~Lse~mAr-~G-a~VtgiD~se~~I~~Ak~ha~e~gv------~i~y~~~~~edl~~~----~~~FDvV~cmEVlE 135 (243)
T COG2227 68 CGGGILSEPLAR-LG-ASVTGIDASEKPIEVAKLHALESGV------NIDYRQATVEDLASA----GGQFDVVTCMEVLE 135 (243)
T ss_pred CCccHhhHHHHH-CC-CeeEEecCChHHHHHHHHhhhhccc------cccchhhhHHHHHhc----CCCccEEEEhhHHH
Confidence 688999999999 48 5699999999999999999998887 345567777766543 4799998432
Q ss_pred CCCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 78 SFGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 78 Pygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
-+-.|..|+..+.++||+||++.+ +|
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~-ST 161 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFL-ST 161 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEE-ec
Confidence 244567899999999999999998 55
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.7e-06 Score=79.60 Aligned_cols=97 Identities=21% Similarity=0.206 Sum_probs=73.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF-- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy-- 79 (341)
+|+|..+.++++..++.+|+++|+|++.++.+++++...+.. .+..++++..+|+++++... .++||+|++|++
T Consensus 81 ~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~-~~~~~v~i~~~D~~~~l~~~---~~~yDvIi~D~~~~ 156 (270)
T TIGR00417 81 GGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGS-YDDPRVDLQIDDGFKFLADT---ENTFDVIIVDSTDP 156 (270)
T ss_pred CCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccc-ccCCceEEEECchHHHHHhC---CCCccEEEEeCCCC
Confidence 578887777776434789999999999999999998643210 01246788899999998754 458999999984
Q ss_pred -CCC-----HHHHHHHHHhcccCCEEEEE
Q 019408 80 -GSD-----SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 -gsp-----~~fld~al~~v~~gGlL~vt 102 (341)
+.+ ..|++.+.+.|++||++.+.
T Consensus 157 ~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 157 VGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 221 36778888999999999974
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.37 E-value=2e-06 Score=86.52 Aligned_cols=97 Identities=23% Similarity=0.231 Sum_probs=72.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
.||+|..++.++...+..+|+++|+|+..++.+++|++.+++. ..+++..+|+..... ......||.|++||
T Consensus 246 cag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~----~~v~~~~~d~~~~~~--~~~~~~fD~VllDaPc 319 (426)
T TIGR00563 246 CAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT----IKAETKDGDGRGPSQ--WAENEQFDRILLDAPC 319 (426)
T ss_pred CCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEeccccccccc--cccccccCEEEEcCCC
Confidence 4899999999887444468999999999999999999998873 234446677653321 01235799999997
Q ss_pred --CCC----C------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 79 --FGS----D------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 --ygs----p------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
+|. | ..+++.|.+.|++||.|.. +|
T Consensus 320 Sg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvy-st 368 (426)
T TIGR00563 320 SATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVY-AT 368 (426)
T ss_pred CCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE-Ee
Confidence 232 1 2467789999999999996 55
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.2e-07 Score=76.23 Aligned_cols=82 Identities=21% Similarity=0.380 Sum_probs=68.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|+|.+++-++- .+++.|+.+||+|+|+++..+|++...+ ++.+.+.|..++-.. +..||.+++|| ||
T Consensus 57 cgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEv------qidlLqcdildle~~----~g~fDtaviNppFG 125 (185)
T KOG3420|consen 57 CGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEV------QIDLLQCDILDLELK----GGIFDTAVINPPFG 125 (185)
T ss_pred CchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhh------hhheeeeeccchhcc----CCeEeeEEecCCCC
Confidence 699999987776 7899999999999999999999998766 346788888776443 46899999999 98
Q ss_pred CC-----HHHHHHHHHhcc
Q 019408 81 SD-----SSFLRTVFNAVK 94 (341)
Q Consensus 81 sp-----~~fld~al~~v~ 94 (341)
+- ..|++.|++.++
T Consensus 126 Tk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 126 TKKKGADMEFVSAALKVAS 144 (185)
T ss_pred cccccccHHHHHHHHHHHH
Confidence 73 478889998776
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-06 Score=80.46 Aligned_cols=92 Identities=24% Similarity=0.158 Sum_probs=70.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|||..++..+......+|+++|+|+.+++.+++|++ ++.. .++++.+.|+...+. ..+||+|+.+| |.
T Consensus 117 ~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~----~~i~~~~~d~~~~~~-----~~~fD~Iv~npPy~ 186 (275)
T PRK09328 117 TGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLG----ARVEFLQGDWFEPLP-----GGRFDLIVSNPPYI 186 (275)
T ss_pred CcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCC----CcEEEEEccccCcCC-----CCceeEEEECCCcC
Confidence 7999999999986445789999999999999999999 3321 467888999854321 35799999998 65
Q ss_pred CC-----------------------------HHHHHHHHHhcccCCEEEEEe
Q 019408 81 SD-----------------------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp-----------------------------~~fld~al~~v~~gGlL~vt~ 103 (341)
.. ..++..+.+.|++||.+.+..
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 32 123445568999999999843
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.2e-06 Score=78.25 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=75.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++. .| .+|+++|+|+++++.+++|++..++. .+++++++|+.++.... .+.||+|.+.-
T Consensus 53 cG~G~~a~~la~-~g-~~v~~vD~s~~~l~~a~~~~~~~g~~----~~v~~~~~d~~~l~~~~---~~~fD~V~~~~vl~ 123 (255)
T PRK11036 53 GGEGQTAIKLAE-LG-HQVILCDLSAEMIQRAKQAAEAKGVS----DNMQFIHCAAQDIAQHL---ETPVDLILFHAVLE 123 (255)
T ss_pred CCchHHHHHHHH-cC-CEEEEEECCHHHHHHHHHHHHhcCCc----cceEEEEcCHHHHhhhc---CCCCCEEEehhHHH
Confidence 799999999987 46 57999999999999999999988763 46788999998864322 35799998764
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
...|..++..+.+.|++||+|.++.
T Consensus 124 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 124 WVADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred hhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 1335677889999999999999854
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.7e-06 Score=80.58 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=73.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF-- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy-- 79 (341)
+|.|....+.++-.++.+|+++|+|+..+++.++.+...+.. .+..+++++.+|+..++.+. .+++||+|++|.+
T Consensus 100 gG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~-~~dpRv~vi~~Da~~~l~~~--~~~~yDvIi~D~~dp 176 (308)
T PLN02366 100 GGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG-FDDPRVNLHIGDGVEFLKNA--PEGTYDAIIVDSSDP 176 (308)
T ss_pred CCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc-cCCCceEEEEChHHHHHhhc--cCCCCCEEEEcCCCC
Confidence 366776666665456789999999999999999998643210 02357899999999999753 2457999999853
Q ss_pred -CCC-----HHHHHHHHHhcccCCEEEEEe
Q 019408 80 -GSD-----SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 -gsp-----~~fld~al~~v~~gGlL~vt~ 103 (341)
+.+ .+|++.+.+.|++||++++.+
T Consensus 177 ~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 177 VGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred CCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 322 257888889999999998644
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=3e-06 Score=74.56 Aligned_cols=92 Identities=21% Similarity=0.144 Sum_probs=72.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCcc-EEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKR-WVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~-~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||+|..++..+.. + .+|+++|+|+++++.+++|++.++.. ++ +.+.+.|+.+.+. ...||+|+.+| |
T Consensus 32 ~G~G~~~~~l~~~-~-~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~~~~-----~~~~d~vi~n~p~ 100 (188)
T PRK14968 32 TGSGIVAIVAAKN-G-KKVVGVDINPYAVECAKCNAKLNNIR----NNGVEVIRSDLFEPFR-----GDKFDVILFNPPY 100 (188)
T ss_pred cccCHHHHHHHhh-c-ceEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEecccccccc-----ccCceEEEECCCc
Confidence 7999999999984 4 67999999999999999999988873 22 6778888765432 23799999987 5
Q ss_pred CC------------------------CHHHHHHHHHhcccCCEEEEEec
Q 019408 80 GS------------------------DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gs------------------------p~~fld~al~~v~~gGlL~vt~T 104 (341)
.. ...++..+.+.|++||.+++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 42 12367788899999999987553
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.2e-06 Score=78.19 Aligned_cols=90 Identities=13% Similarity=0.168 Sum_probs=70.3
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||||..++..+...+ ..+|+++|++++.++.+++|++.+++. ++++.++|+...+.. ...||+|++|+-.
T Consensus 86 ~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-----~v~~~~~d~~~~~~~----~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 86 TGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-----NVIVIVGDGTQGWEP----LAPYDRIYVTAAG 156 (215)
T ss_pred CCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-----CeEEEECCcccCCcc----cCCCCEEEEcCCc
Confidence 799999998877433 246999999999999999999998873 678899999765432 3479999999722
Q ss_pred CCHHHHHHHHHhcccCCEEEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt 102 (341)
. ...+...+.|++||.|++.
T Consensus 157 ~--~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 157 P--KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred c--cccHHHHHhcCcCcEEEEE
Confidence 1 2334567889999999873
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=5e-06 Score=84.69 Aligned_cols=95 Identities=24% Similarity=0.296 Sum_probs=74.8
Q ss_pred CccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 1 fagsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
.||.|.-+...|.-. +-..|++||+|+.-++.+++|++..|+. ++.+.+.|+..+-... ...||.|.+|+-
T Consensus 121 CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-----nv~v~~~D~~~~~~~~---~~~fD~ILvDaP 192 (470)
T PRK11933 121 AAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-----NVALTHFDGRVFGAAL---PETFDAILLDAP 192 (470)
T ss_pred CCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEeCchhhhhhhc---hhhcCeEEEcCC
Confidence 378999998887643 3358999999999999999999999984 6788999998764322 347999999984
Q ss_pred CC--------C------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 80 GS--------D------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gs--------p------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
-| | ...|+.|.++|++||.|+ -+|
T Consensus 193 CSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LV-YST 242 (470)
T PRK11933 193 CSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV-YST 242 (470)
T ss_pred CCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE-EEC
Confidence 22 1 234678899999999995 577
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2e-06 Score=83.53 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=75.7
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEec-cHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF-DANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~-DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
|+|||.+-|++.. .|+ +|+.+|++...++-++.|++.-+++ .+.+... ||..+= ..+..+|-|..||
T Consensus 205 FcGTGgiLiEagl-~G~-~viG~Did~~mv~gak~Nl~~y~i~-----~~~~~~~~Da~~lp----l~~~~vdaIatDPP 273 (347)
T COG1041 205 FCGTGGILIEAGL-MGA-RVIGSDIDERMVRGAKINLEYYGIE-----DYPVLKVLDATNLP----LRDNSVDAIATDPP 273 (347)
T ss_pred cCCccHHHHhhhh-cCc-eEeecchHHHHHhhhhhhhhhhCcC-----ceeEEEecccccCC----CCCCccceEEecCC
Confidence 8999999999998 687 5899999999999999999998874 5666666 987653 3344699999999
Q ss_pred CCCCH------------HHHHHHHHhcccCCEEEEEe
Q 019408 79 FGSDS------------SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp~------------~fld~al~~v~~gGlL~vt~ 103 (341)
||.++ .+++++...|++||.+++.+
T Consensus 274 YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 274 YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 98654 45678888999999999844
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.4e-06 Score=74.60 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=78.9
Q ss_pred ccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc--CCcccEEEeCCCC
Q 019408 4 CGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK--REFFDLIDIDSFG 80 (341)
Q Consensus 4 sG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~--~~~fDvIdlDPyg 80 (341)
||.=+|..|.+ ..-.+|++.|+|++++++-.+=++.-++. +++++++++|.+-|.++... ...||++|+|-+.
T Consensus 84 TGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~----~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK 159 (237)
T KOG1663|consen 84 TGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD----HKITFIEGPALESLDELLADGESGTFDFAFVDADK 159 (237)
T ss_pred cCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc----ceeeeeecchhhhHHHHHhcCCCCceeEEEEccch
Confidence 67777777776 33457999999999999998888888885 78999999999999887655 4569999999854
Q ss_pred C-CHHHHHHHHHhcccCCEEEEEe
Q 019408 81 S-DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 s-p~~fld~al~~v~~gGlL~vt~ 103 (341)
. -+.|.+.++++|+.||+|.+--
T Consensus 160 ~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 160 DNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHHHHHHHHHHhhcccccEEEEec
Confidence 2 1277899999999999999843
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.6e-05 Score=79.06 Aligned_cols=99 Identities=16% Similarity=0.221 Sum_probs=80.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe---CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI---DS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl---DP 78 (341)
||+|...+.+|....-..++++|+++.+++.+.+++..+++. ++.++++||..++... ....+|.|.+ ||
T Consensus 131 cGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-----NV~~i~~DA~~ll~~~--~~~s~D~I~lnFPdP 203 (390)
T PRK14121 131 FGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-----NLLIINYDARLLLELL--PSNSVEKIFVHFPVP 203 (390)
T ss_pred CcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEECCHHHhhhhC--CCCceeEEEEeCCCC
Confidence 799999999998633357999999999999999999999884 6889999999887543 3457999976 66
Q ss_pred CC-CC------HHHHHHHHHhcccCCEEEEEecCCCC
Q 019408 79 FG-SD------SSFLRTVFNAVKRDGLLYLTSTDGYS 108 (341)
Q Consensus 79 yg-sp------~~fld~al~~v~~gGlL~vt~TD~~~ 108 (341)
.- .. ..|++.+.+.|++||.+.+ .||-..
T Consensus 204 W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l-~TD~~~ 239 (390)
T PRK14121 204 WDKKPHRRVISEDFLNEALRVLKPGGTLEL-RTDSEL 239 (390)
T ss_pred ccccchhhccHHHHHHHHHHHcCCCcEEEE-EEECHH
Confidence 32 11 3789999999999999998 787644
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.9e-06 Score=73.52 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=70.8
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||||..+..++...+ ..+|+++|+|+++++.+++|++.+++. +++++.++|+...+.. ...||+|+++--.
T Consensus 81 ~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~----~~v~~~~~d~~~~~~~----~~~fD~Ii~~~~~ 152 (205)
T PRK13944 81 TGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW----GVVEVYHGDGKRGLEK----HAPFDAIIVTAAA 152 (205)
T ss_pred cCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CcEEEEECCcccCCcc----CCCccEEEEccCc
Confidence 799999988876322 358999999999999999999988873 4578899998765432 2479999999621
Q ss_pred CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~ 103 (341)
. .+.+..++.|++||.|.+.-
T Consensus 153 ~--~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 153 S--TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred c--hhhHHHHHhcCcCcEEEEEE
Confidence 1 23356678899999998743
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.7e-05 Score=72.54 Aligned_cols=95 Identities=19% Similarity=0.192 Sum_probs=73.7
Q ss_pred CccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
.||+|..++.++...+ ..+|+.+|+|+..++.+++|++.+++ .+++++++|+..+- ...+.||+|.+.-
T Consensus 53 GcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~----~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 53 CCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-----HNVELVHGNAMELP----FDDNSFDYVTIGFG 123 (231)
T ss_pred CCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CceEEEEechhcCC----CCCCCccEEEEecc
Confidence 3899999998876533 35899999999999999999987776 36788999987642 1245899998864
Q ss_pred ---CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 ---FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 ---ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+..++..+.+.|++||.+++..+
T Consensus 124 l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 124 LRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 22344677888999999999987543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.7e-05 Score=58.81 Aligned_cols=92 Identities=23% Similarity=0.222 Sum_probs=71.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|+|..+..++. ....+++++|+|+.+++.++++.+.+.. ...++++.|+.+... .....||+|+.++ +.
T Consensus 7 ~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 7 CGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLA-----DNVEVLKGDAEELPP---EADESFDVIISDPPLH 77 (107)
T ss_pred CCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccc-----cceEEEEcChhhhcc---ccCCceEEEEEcccee
Confidence 789999888887 5678999999999999999975554433 357788999988754 1235799999999 33
Q ss_pred C----CHHHHHHHHHhcccCCEEEEE
Q 019408 81 S----DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 s----p~~fld~al~~v~~gGlL~vt 102 (341)
. +..++..+.+.+++||.+.++
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2 246677888899999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.4e-05 Score=74.76 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=88.2
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC--
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG-- 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg-- 80 (341)
|.|...=+.++....++|+++|+|+..+++.++-+...... -+..+++++.+|+..+|++... ++||+|++|.+.
T Consensus 86 G~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~~~~--~~yDvIi~D~~dp~ 162 (246)
T PF01564_consen 86 GDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKETQE--EKYDVIIVDLTDPD 162 (246)
T ss_dssp TTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHTSSS--T-EEEEEEESSSTT
T ss_pred CChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHhccC--CcccEEEEeCCCCC
Confidence 44544333343345789999999999999999987754220 0125789999999999987532 289999999864
Q ss_pred -CC-----HHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcE
Q 019408 81 -SD-----SSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHV 154 (341)
Q Consensus 81 -sp-----~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i 154 (341)
.+ .+|++.+-+.|++||++++.+. +- +.. ...+..+.++..+.-..+
T Consensus 163 ~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~-----~~---------------------~~~-~~~~~~i~~tl~~~F~~v 215 (246)
T PF01564_consen 163 GPAPNLFTREFYQLCKRRLKPDGVLVLQAG-----SP---------------------FLH-PELFKSILKTLRSVFPQV 215 (246)
T ss_dssp SCGGGGSSHHHHHHHHHHEEEEEEEEEEEE-----ET---------------------TTT-HHHHHHHHHHHHTTSSEE
T ss_pred CCcccccCHHHHHHHHhhcCCCcEEEEEcc-----Cc---------------------ccc-hHHHHHHHHHHHHhCCce
Confidence 11 3788999999999999998663 11 111 124566677777777777
Q ss_pred EEEEecc
Q 019408 155 SPLFSYY 161 (341)
Q Consensus 155 ~Pl~s~~ 161 (341)
.|.....
T Consensus 216 ~~~~~~v 222 (246)
T PF01564_consen 216 KPYTAYV 222 (246)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 7776666
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.3e-05 Score=70.25 Aligned_cols=89 Identities=16% Similarity=0.062 Sum_probs=69.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.+|+|..++++++ + +.+|+++|+|+.+++.+++|+... .+++++++|+.++... ...||+|+.+| |
T Consensus 21 G~G~G~lt~~l~~-~-~~~v~~vE~~~~~~~~~~~~~~~~-------~~v~ii~~D~~~~~~~----~~~~d~vi~n~Py 87 (169)
T smart00650 21 GPGKGALTEELLE-R-AARVTAIEIDPRLAPRLREKFAAA-------DNLTVIHGDALKFDLP----KLQPYKVVGNLPY 87 (169)
T ss_pred CCCccHHHHHHHh-c-CCeEEEEECCHHHHHHHHHHhccC-------CCEEEEECchhcCCcc----ccCCCEEEECCCc
Confidence 3799999999998 4 468999999999999999998642 3678999999876421 23699999998 7
Q ss_pred CCCHHHHHHHHHh--cccCCEEEEE
Q 019408 80 GSDSSFLRTVFNA--VKRDGLLYLT 102 (341)
Q Consensus 80 gsp~~fld~al~~--v~~gGlL~vt 102 (341)
....+.+...++. +.++|++.+.
T Consensus 88 ~~~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 88 NISTPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred ccHHHHHHHHHhcCCCcceEEEEEE
Confidence 7666888877754 3366777663
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-05 Score=72.75 Aligned_cols=91 Identities=13% Similarity=0.124 Sum_probs=70.8
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+|||..+..++...+. .+|+++|++++.++..++|++.+++ .++++.++|+..... ....||+|+++-..
T Consensus 85 ~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-----~~v~~~~gd~~~~~~----~~~~fD~I~~~~~~ 155 (212)
T PRK13942 85 TGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-----DNVEVIVGDGTLGYE----ENAPYDRIYVTAAG 155 (212)
T ss_pred CcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCeEEEECCcccCCC----cCCCcCEEEECCCc
Confidence 7999999887764343 5899999999999999999998887 368899999875432 23579999998632
Q ss_pred CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~ 103 (341)
. ...+..++.|++||.|.+..
T Consensus 156 ~--~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 156 P--DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred c--cchHHHHHhhCCCcEEEEEE
Confidence 2 33356677899999999854
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.9e-05 Score=73.75 Aligned_cols=66 Identities=23% Similarity=0.195 Sum_probs=53.0
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||||+.++.++...+..+|+++|+|+.+++..++|+. +++++++|+..+.. ..+||+|+.+| |
T Consensus 72 GcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----------~v~~v~~D~~e~~~-----~~kFDlIIsNPPF 136 (279)
T PHA03411 72 CAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----------EAEWITSDVFEFES-----NEKFDVVISNPPF 136 (279)
T ss_pred CCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----------CCEEEECchhhhcc-----cCCCcEEEEcCCc
Confidence 48999999999875445689999999999999998742 34678999987642 35799999998 7
Q ss_pred CC
Q 019408 80 GS 81 (341)
Q Consensus 80 gs 81 (341)
+.
T Consensus 137 ~~ 138 (279)
T PHA03411 137 GK 138 (279)
T ss_pred cc
Confidence 64
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.1e-05 Score=74.47 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=71.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++. .|+ +|+++|.|++.++.++++++.++.. ..+++.++|+.++-. ..++||+|..-=
T Consensus 140 CG~G~~s~~La~-~g~-~V~GID~s~~~i~~Ar~~~~~~~~~----~~i~~~~~dae~l~~----~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 140 CGGGLLSEPLAR-MGA-TVTGVDAVDKNVKIARLHADMDPVT----STIEYLCTTAEKLAD----EGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCCHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHhcCcc----cceeEEecCHHHhhh----ccCCCCEEEEhhHHH
Confidence 799999998876 565 6999999999999999998876542 467889999977532 235899886311
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
...+..|+....+.|++||.++++.
T Consensus 210 Hv~d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 210 HVANPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 2235688999999999999999864
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.8e-05 Score=70.60 Aligned_cols=93 Identities=11% Similarity=0.093 Sum_probs=71.5
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
+|+|..++.+++..|. .+|+++|+|+..++.+++|++.+++ .++++..+|+..+ ......||+|+.+- +
T Consensus 86 ~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-----~~v~~~~~d~~~l----~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 86 SGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-----TNVEFRLGEIEAL----PVADNSVDVIISNCVI 156 (272)
T ss_pred CCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-----CCEEEEEcchhhC----CCCCCceeEEEEcCcc
Confidence 6888888877764455 4799999999999999999998877 3677888997653 12235799998775 2
Q ss_pred ---CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 ---GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 ---gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
......++.+.+.|++||.|++..
T Consensus 157 ~~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 157 NLSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 123467889999999999999843
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.6e-05 Score=84.15 Aligned_cols=75 Identities=19% Similarity=-0.041 Sum_probs=59.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCC-----------CCCccEEEEeccHHHHHHHhhhcCCc
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGS-----------GDEKRWVVTHFDANRVLSECYLKREF 70 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~-----------~~~~~~~v~~~DA~~~l~~~~~~~~~ 70 (341)
+|||..+|..+++....+|+++|+|++|++++++|+++|+++. ...++++++++|..+.+.. .+.+
T Consensus 127 ~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~---~~~~ 203 (1082)
T PLN02672 127 CGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD---NNIE 203 (1082)
T ss_pred cchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc---cCCc
Confidence 7999999999987555689999999999999999999986520 0013588999999876632 1236
Q ss_pred ccEEEeCC-C
Q 019408 71 FDLIDIDS-F 79 (341)
Q Consensus 71 fDvIdlDP-y 79 (341)
||+|+-.| |
T Consensus 204 fDlIVSNPPY 213 (1082)
T PLN02672 204 LDRIVGCIPQ 213 (1082)
T ss_pred eEEEEECCCc
Confidence 99999888 5
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.4e-05 Score=72.77 Aligned_cols=82 Identities=13% Similarity=0.088 Sum_probs=61.0
Q ss_pred ccccHhHHHHhhhC---CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEA---KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~---ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
||||.+++.++.+. ...+|+++|+|+.|++++++|+. .+.+++.|+..... ..+||+|+..|
T Consensus 58 ~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----------~~~~~~~D~~~~~~-----~~~FDlIIsNP 122 (241)
T PHA03412 58 AGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----------EATWINADALTTEF-----DTLFDMAISNP 122 (241)
T ss_pred ChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----------CCEEEEcchhcccc-----cCCccEEEECC
Confidence 79999999888751 34589999999999999999863 24577888864321 24799999999
Q ss_pred -CCCC---------------HHHHHHHHHhcccCCE
Q 019408 79 -FGSD---------------SSFLRTVFNAVKRDGL 98 (341)
Q Consensus 79 -ygsp---------------~~fld~al~~v~~gGl 98 (341)
|+.. ..+++.|.+++++|++
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 7621 1356788886666665
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.7e-05 Score=69.08 Aligned_cols=90 Identities=17% Similarity=0.137 Sum_probs=68.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|||..+...+. .+ .+|+++|+|+++++.+++|++.+++. ++++.++|+...+. ....||+|+++...
T Consensus 87 ~GsG~~t~~la~-~~-~~v~~vd~~~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~----~~~~fD~I~~~~~~- 154 (212)
T PRK00312 87 TGSGYQAAVLAH-LV-RRVFSVERIKTLQWEAKRRLKQLGLH-----NVSVRHGDGWKGWP----AYAPFDRILVTAAA- 154 (212)
T ss_pred CCccHHHHHHHH-Hh-CEEEEEeCCHHHHHHHHHHHHHCCCC-----ceEEEECCcccCCC----cCCCcCEEEEccCc-
Confidence 799999885555 33 48999999999999999999988873 57889999864322 23579999999722
Q ss_pred CHHHHHHHHHhcccCCEEEEEec
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~T 104 (341)
..+.+...+.|++||.|.+...
T Consensus 155 -~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 155 -PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -hhhhHHHHHhcCCCcEEEEEEc
Confidence 1334566788999999997543
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.7e-05 Score=66.50 Aligned_cols=89 Identities=21% Similarity=0.167 Sum_probs=64.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++.++. +|. +|+++|+|+.+++.++++++.+++ .++....|+...- . ...||+|+.-. |.
T Consensus 39 cG~G~~a~~la~-~g~-~V~~iD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~~~--~---~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 39 CGQGRNSLYLSL-AGY-DVRAWDHNPASIASVLDMKARENL------PLRTDAYDINAAA--L---NEDYDFIFSTVVFM 105 (195)
T ss_pred CCCCHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHHHhCC------CceeEeccchhcc--c---cCCCCEEEEecccc
Confidence 799999998887 675 799999999999999999988776 2455666764321 1 24799887643 42
Q ss_pred C--C---HHHHHHHHHhcccCCEEE-EEe
Q 019408 81 S--D---SSFLRTVFNAVKRDGLLY-LTS 103 (341)
Q Consensus 81 s--p---~~fld~al~~v~~gGlL~-vt~ 103 (341)
. + ..++..+.+.|++||++. ++.
T Consensus 106 ~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 106 FLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred cCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 1 1 356778888999999854 443
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00013 Score=65.76 Aligned_cols=88 Identities=19% Similarity=0.134 Sum_probs=66.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++..+. +|. +|+++|+|+.+++.++++++.+++. .+++...|+..+- . ...||+|+.=-
T Consensus 39 cG~G~~a~~La~-~g~-~V~gvD~S~~~i~~a~~~~~~~~~~-----~v~~~~~d~~~~~----~-~~~fD~I~~~~~~~ 106 (197)
T PRK11207 39 CGNGRNSLYLAA-NGF-DVTAWDKNPMSIANLERIKAAENLD-----NLHTAVVDLNNLT----F-DGEYDFILSTVVLM 106 (197)
T ss_pred CCCCHHHHHHHH-CCC-EEEEEeCCHHHHHHHHHHHHHcCCC-----cceEEecChhhCC----c-CCCcCEEEEecchh
Confidence 799999988887 565 7999999999999999999988773 4677788876531 1 34699886432
Q ss_pred CCC---CHHHHHHHHHhcccCCEEEE
Q 019408 79 FGS---DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 79 ygs---p~~fld~al~~v~~gGlL~v 101 (341)
|-. ...++....++|++||.+.+
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 211 23667788889999998543
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00012 Score=71.33 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=70.3
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||||..++.+++..+. .+|+++|+|++.++..++|++.++++ +++++++|+...... ...||+|+++. +
T Consensus 89 ~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-----nV~~i~gD~~~~~~~----~~~fD~Ii~~~-g 158 (322)
T PRK13943 89 GGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-----NVIFVCGDGYYGVPE----FAPYDVIFVTV-G 158 (322)
T ss_pred CCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEeCChhhcccc----cCCccEEEECC-c
Confidence 7999999999874332 47999999999999999999998873 578889998765432 24699999985 2
Q ss_pred CCHHHHHHHHHhcccCCEEEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt 102 (341)
.+ ...+..++.+++||.+.+.
T Consensus 159 ~~-~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 159 VD-EVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred hH-HhHHHHHHhcCCCCEEEEE
Confidence 21 3345678899999998873
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00015 Score=67.69 Aligned_cols=94 Identities=19% Similarity=0.186 Sum_probs=75.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||||-.+++++++.|..+|+++|+|+.-++..++=+..-+.. .++.+.+||..+- -..+.||+|.+.=
T Consensus 60 ~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~-----~i~fv~~dAe~LP----f~D~sFD~vt~~fglr 130 (238)
T COG2226 60 CGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ-----NVEFVVGDAENLP----FPDNSFDAVTISFGLR 130 (238)
T ss_pred CCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc-----ceEEEEechhhCC----CCCCccCEEEeeehhh
Confidence 799999999999877789999999999999999988765553 3889999999765 2356899997753
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+...|....+.+++||.+++..+
T Consensus 131 nv~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 131 NVTDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred cCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 22233567777899999999887665
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0001 Score=78.80 Aligned_cols=83 Identities=10% Similarity=-0.063 Sum_probs=58.7
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCCCH---HHHH-------
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FGSDS---SFLR------- 87 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygsp~---~fld------- 87 (341)
+++++|+|+.+++.+++|++.+++. +.+++.++|+.++-... ....||+|+.+| ||.-. +-++
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~----~~i~~~~~D~~~~~~~~--~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg 331 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVA----ELITFEVKDVADLKNPL--PKGPTGLVISNPPYGERLGEEPALIALYSQLG 331 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCC----cceEEEeCChhhccccc--ccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence 6899999999999999999999985 56889999998764321 124699999998 87522 1111
Q ss_pred HHHHhcccCCEEEEEecCCC
Q 019408 88 TVFNAVKRDGLLYLTSTDGY 107 (341)
Q Consensus 88 ~al~~v~~gGlL~vt~TD~~ 107 (341)
..++...+|+-+++-+.|..
T Consensus 332 ~~lk~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 332 RRLKQQFGGWNAALFSSSPE 351 (702)
T ss_pred HHHHHhCCCCeEEEEeCCHH
Confidence 23443447777766555544
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.5e-05 Score=69.82 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=67.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|+|.|.-.|.+|. .|. .|+++|+||.-+...++|++.-|++ ++++++++|..++...+...+.++|+|++-| .
T Consensus 102 f~g~gGntiqfa~-~~~-~VisIdiDPikIa~AkhNaeiYGI~----~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppw 175 (263)
T KOG2730|consen 102 FCGVGGNTIQFAL-QGP-YVIAIDIDPVKIACARHNAEVYGVP----DRITFICGDFLDLASKLKADKIKYDCVFLSPPW 175 (263)
T ss_pred hhcCCchHHHHHH-hCC-eEEEEeccHHHHHHHhccceeecCC----ceeEEEechHHHHHHHHhhhhheeeeeecCCCC
Confidence 6888999999998 454 6999999999999999999999996 6899999999999998877777889999998 6
Q ss_pred CCC
Q 019408 80 GSD 82 (341)
Q Consensus 80 gsp 82 (341)
|-|
T Consensus 176 ggp 178 (263)
T KOG2730|consen 176 GGP 178 (263)
T ss_pred CCc
Confidence 655
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0001 Score=70.29 Aligned_cols=87 Identities=18% Similarity=0.159 Sum_probs=65.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.+++ .|. +|+++|+|+.+++.+++|++.+++ .+++...|+...- . .+.||+|+.--
T Consensus 129 cG~G~~~~~la~-~g~-~V~avD~s~~ai~~~~~~~~~~~l------~v~~~~~D~~~~~----~-~~~fD~I~~~~vl~ 195 (287)
T PRK12335 129 CGQGRNSLYLAL-LGF-DVTAVDINQQSLENLQEIAEKENL------NIRTGLYDINSAS----I-QEEYDFILSTVVLM 195 (287)
T ss_pred CCCCHHHHHHHH-CCC-EEEEEECCHHHHHHHHHHHHHcCC------ceEEEEechhccc----c-cCCccEEEEcchhh
Confidence 799999999887 564 799999999999999999998776 3566777876531 1 35799997653
Q ss_pred CCC---CHHHHHHHHHhcccCCEEEE
Q 019408 79 FGS---DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 79 ygs---p~~fld~al~~v~~gGlL~v 101 (341)
|-. ...++....+.+++||++.+
T Consensus 196 ~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 196 FLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 211 12466777789999999664
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.79 E-value=6.5e-05 Score=70.45 Aligned_cols=97 Identities=14% Similarity=0.037 Sum_probs=72.4
Q ss_pred ccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+|||.+++-.+.- ..-.+|+..|++++-.+.+++|++.+++. +.+++.+.|+.+--... .....||.|+||=-.
T Consensus 49 tGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~----~~v~~~~~Dv~~~g~~~-~~~~~~DavfLDlp~ 123 (247)
T PF08704_consen 49 TGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD----DNVTVHHRDVCEEGFDE-ELESDFDAVFLDLPD 123 (247)
T ss_dssp -TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC----TTEEEEES-GGCG--ST-T-TTSEEEEEEESSS
T ss_pred CCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC----CCceeEecceecccccc-cccCcccEEEEeCCC
Confidence 4889988887764 23468999999999999999999999984 57899999986321111 112479999999722
Q ss_pred CCHHHHHHHHHhc-ccCCEEEEEec
Q 019408 81 SDSSFLRTVFNAV-KRDGLLYLTST 104 (341)
Q Consensus 81 sp~~fld~al~~v-~~gGlL~vt~T 104 (341)
|-..++.+.++| ++||.|++-+.
T Consensus 124 -Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 124 -PWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp -GGGGHHHHHHHE-EEEEEEEEEES
T ss_pred -HHHHHHHHHHHHhcCCceEEEECC
Confidence 334588999999 89999998554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00023 Score=69.59 Aligned_cols=96 Identities=18% Similarity=0.175 Sum_probs=71.5
Q ss_pred HHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCC--CCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC---C--C
Q 019408 8 SLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERG--SGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---S--F 79 (341)
Q Consensus 8 gir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~--~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---P--y 79 (341)
++|=+.. .+..+|+.+|.+|+.+|+.++|..+-.+. .-.+-+++|++.||+.+++.. +++||+|++| | +
T Consensus 303 AlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a---~~~fD~vIVDl~DP~tp 379 (508)
T COG4262 303 ALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA---ADMFDVVIVDLPDPSTP 379 (508)
T ss_pred HHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh---cccccEEEEeCCCCCCc
Confidence 4444443 67899999999999999999887753221 011346889999999999865 5689999876 4 1
Q ss_pred CC----CHHHHHHHHHhcccCCEEEEEecCC
Q 019408 80 GS----DSSFLRTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 80 gs----p~~fld~al~~v~~gGlL~vt~TD~ 106 (341)
.. ..+|.-.+-+.++++|++.+.+++.
T Consensus 380 s~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 380 SIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred chhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 11 2377777788999999999988743
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=71.69 Aligned_cols=93 Identities=14% Similarity=0.072 Sum_probs=73.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC-C--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID-S-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD-P-- 78 (341)
||+|..++..+...| .+|+.+|+|+..++.++++++.+++. +++++.++|+..+- .....||+|+.- -
T Consensus 127 CG~G~~~~~La~~~g-~~v~gvD~s~~~i~~a~~~~~~~g~~----~~v~~~~~D~~~~~----~~~~~FD~V~s~~~~~ 197 (340)
T PLN02244 127 CGIGGSSRYLARKYG-ANVKGITLSPVQAARANALAAAQGLS----DKVSFQVADALNQP----FEDGQFDLVWSMESGE 197 (340)
T ss_pred CCCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhcCCC----CceEEEEcCcccCC----CCCCCccEEEECCchh
Confidence 799999988887434 47999999999999999999988773 46888999987531 224579999763 2
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+..++..+.+.|++||.|.++.
T Consensus 198 h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 198 HMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 3334578888999999999999854
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00013 Score=66.41 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=72.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++.+.+..+|+.+|+|++.++.+++|++..++. .++++...|+.+... ...||+|+.-=
T Consensus 8 cG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~----~~i~~~~~d~~~~~~-----~~~fD~I~~~~~l~ 78 (224)
T smart00828 8 CGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ----GRIRIFYRDSAKDPF-----PDTYDLVFGFEVIH 78 (224)
T ss_pred CCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC----cceEEEecccccCCC-----CCCCCEeehHHHHH
Confidence 689999999887643457999999999999999999987774 567888888754311 24799997521
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
...+..++..+.+.|++||.+.++.
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 2334578889999999999999864
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0002 Score=70.55 Aligned_cols=96 Identities=24% Similarity=0.227 Sum_probs=68.9
Q ss_pred ccccHhHHHHhhhC-C-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 2 CGCGIRSLRYLAEA-K-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~-g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
||=|.-....|.-. + ...|++||+|+.=++.+++|++..|+. .+.+++.|+..+..... .+.+||.|.+||-
T Consensus 165 AAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-----nv~~~~~d~~~~~~~~~-~~~~fD~iLlDaP 238 (355)
T COG0144 165 AAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-----NVIVVNKDARRLAELLP-GGEKFDRILLDAP 238 (355)
T ss_pred CCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-----ceEEEeccccccccccc-ccCcCcEEEECCC
Confidence 34454444444321 1 345799999999999999999999984 47788999887654432 2336999999983
Q ss_pred CCCH--------------------------HHHHHHHHhcccCCEEEEEec
Q 019408 80 GSDS--------------------------SFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gsp~--------------------------~fld~al~~v~~gGlL~vt~T 104 (341)
-|.. .+|++|++.|++||.|.. +|
T Consensus 239 CSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVY-ST 288 (355)
T COG0144 239 CSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVY-ST 288 (355)
T ss_pred CCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE-Ec
Confidence 2211 345699999999999986 66
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00031 Score=64.37 Aligned_cols=91 Identities=22% Similarity=0.258 Sum_probs=71.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.+++ .++ +|+.+|+|+.+++.+++|+..++. .+++...|+..+... .+.+||+|++.-
T Consensus 57 ~G~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 57 CGGGILSESMAR-LGA-DVTGIDASEENIEVARLHALESGL------KIDYRQTTAEELAAE---HPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCHHHHHHHH-cCC-eEEEEcCCHHHHHHHHHHHHHcCC------ceEEEecCHHHhhhh---cCCCccEEEEhhHhh
Confidence 789999988887 564 699999999999999999987654 356778888876532 235899998753
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
...+..++..+.+.+++||.++++.
T Consensus 126 ~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 126 HVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 2345577888889999999999853
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.71 E-value=7.3e-05 Score=73.77 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=60.4
Q ss_pred CccccHhHHHHhhhCCCC----------------------------------------EEEEeeCCHHHHHHHHHHHHHc
Q 019408 1 MCGCGIRSLRYLAEAKAD----------------------------------------FVMANDGNDAHRRVILGNLKSI 40 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~----------------------------------------~V~~~Dis~~A~~~i~~N~~~n 40 (341)
|||||-+.||+|. .+.. .++..|+|+..++.++.|++.-
T Consensus 199 mCGSGTi~IEAAl-~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~A 277 (381)
T COG0116 199 MCGSGTILIEAAL-IAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAA 277 (381)
T ss_pred CCCccHHHHHHHH-hccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhc
Confidence 8999999999998 4531 4779999999999999999999
Q ss_pred CCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCC
Q 019408 41 ERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FGS 81 (341)
Q Consensus 41 ~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygs 81 (341)
|+. +.+++.++|+.++=.. -+.+|+|+.+| ||-
T Consensus 278 Gv~----d~I~f~~~d~~~l~~~----~~~~gvvI~NPPYGe 311 (381)
T COG0116 278 GVG----DLIEFKQADATDLKEP----LEEYGVVISNPPYGE 311 (381)
T ss_pred CCC----ceEEEEEcchhhCCCC----CCcCCEEEeCCCcch
Confidence 985 7889999999876322 15799999999 863
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00037 Score=66.65 Aligned_cols=97 Identities=23% Similarity=0.253 Sum_probs=72.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC--
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG-- 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg-- 80 (341)
|-|...=+.++....++|+++|||+..+++.++=+..-... .+..+++++-+|+.+++++.. ++||+|++|-+-
T Consensus 86 GdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~-~~dpRv~i~i~Dg~~~v~~~~---~~fDvIi~D~tdp~ 161 (282)
T COG0421 86 GDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG-ADDPRVEIIIDDGVEFLRDCE---EKFDVIIVDSTDPV 161 (282)
T ss_pred CccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc-cCCCceEEEeccHHHHHHhCC---CcCCEEEEcCCCCC
Confidence 44554444454455799999999999999999977643210 012578999999999998763 389999998532
Q ss_pred CC------HHHHHHHHHhcccCCEEEEEe
Q 019408 81 SD------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp------~~fld~al~~v~~gGlL~vt~ 103 (341)
.| .+|.+..-++|+++|++.+.+
T Consensus 162 gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 162 GPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 13 588899999999999999753
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.68 E-value=7e-05 Score=57.71 Aligned_cols=87 Identities=20% Similarity=0.219 Sum_probs=64.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..+...++ .+..+|+++|+|++.++.++++.+..+ +.+.++|+.++ ....+.||+|+.-=
T Consensus 5 ~G~G~~~~~l~~-~~~~~v~~~D~~~~~~~~~~~~~~~~~--------~~~~~~d~~~l----~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 5 CGTGRFAAALAK-RGGASVTGIDISEEMLEQARKRLKNEG--------VSFRQGDAEDL----PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp -TTSHHHHHHHH-TTTCEEEEEES-HHHHHHHHHHTTTST--------EEEEESBTTSS----SS-TT-EEEEEEESHGG
T ss_pred CcCCHHHHHHHh-ccCCEEEEEeCCHHHHHHHHhcccccC--------chheeehHHhC----cccccccccccccccee
Confidence 688888888887 467889999999999999999887443 34788897765 22356899986654
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEE
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~v 101 (341)
+..+..++..+.+.||+||.+++
T Consensus 72 ~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eccCHHHHHHHHHHHcCcCeEEeC
Confidence 22345778889999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.4e-05 Score=76.81 Aligned_cols=90 Identities=24% Similarity=0.222 Sum_probs=67.2
Q ss_pred ccccHhHHHHhhh----CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC
Q 019408 2 CGCGIRSLRYLAE----AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~e----~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD 77 (341)
||+|+++.++++. .++.+|+|++.|+.|+..+++-++.|+.+ ++++++++|..++ ..+++.|+|+-.
T Consensus 195 AGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~----~~V~vi~~d~r~v-----~lpekvDIIVSE 265 (448)
T PF05185_consen 195 AGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG----DKVTVIHGDMREV-----ELPEKVDIIVSE 265 (448)
T ss_dssp -TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT----TTEEEEES-TTTS-----CHSS-EEEEEE-
T ss_pred CCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC----CeEEEEeCcccCC-----CCCCceeEEEEe
Confidence 7999998777662 24789999999999999998887889885 6899999998865 235699999988
Q ss_pred CCCC---C---HHHHHHHHHhcccCCEEE
Q 019408 78 SFGS---D---SSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 78 Pygs---p---~~fld~al~~v~~gGlL~ 100 (341)
..|+ - .+-++.+-+.|+++|++.
T Consensus 266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 8654 1 134667777899999988
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.6e-05 Score=70.36 Aligned_cols=93 Identities=26% Similarity=0.249 Sum_probs=74.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--y 79 (341)
.|-|..+|+++. +||.+|+.++.||..+++.+-|==.-++. +..++++.+||.++..... .+.||+|+-|| |
T Consensus 143 ~GLGYtAi~a~~-rGA~~VitvEkdp~VLeLa~lNPwSr~l~---~~~i~iilGD~~e~V~~~~--D~sfDaIiHDPPRf 216 (287)
T COG2521 143 TGLGYTAIEALE-RGAIHVITVEKDPNVLELAKLNPWSRELF---EIAIKIILGDAYEVVKDFD--DESFDAIIHDPPRF 216 (287)
T ss_pred cCccHHHHHHHH-cCCcEEEEEeeCCCeEEeeccCCCCcccc---ccccEEecccHHHHHhcCC--ccccceEeeCCCcc
Confidence 477899999987 89999999999999999987764333332 1357899999999998763 46799999999 5
Q ss_pred CCC-----HHHHHHHHHhcccCCEEE
Q 019408 80 GSD-----SSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 80 gsp-----~~fld~al~~v~~gGlL~ 100 (341)
..+ ..|.+.-.+.|++||-|.
T Consensus 217 S~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 217 SLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred chhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 432 356678889999999887
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00018 Score=67.00 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=66.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..++.++...+..+|+++|+|+..++.+++++. ++.+..+|+..+. ....||+|+... +
T Consensus 40 cG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----------~~~~~~~d~~~~~-----~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 40 CGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----------DCQFVEADIASWQ-----PPQALDLIFANASLQ 104 (258)
T ss_pred ccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----------CCeEEECchhccC-----CCCCccEEEEccChh
Confidence 7999999888875345689999999999999988742 3456788887543 234899998886 2
Q ss_pred --CCCHHHHHHHHHhcccCCEEEEE
Q 019408 80 --GSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 --gsp~~fld~al~~v~~gGlL~vt 102 (341)
..+..++..+.+.|++||.+.++
T Consensus 105 ~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 105 WLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 22446788888999999999985
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00026 Score=68.07 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=69.1
Q ss_pred cccH---hHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHH-cCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC
Q 019408 3 GCGI---RSLRYLAEA-KADFVMANDGNDAHRRVILGNLKS-IERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID 77 (341)
Q Consensus 3 gsG~---rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~-n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD 77 (341)
|||- .+|-.+... ...+++.+|+|+++++..+++++. .++. +++++..+|+.+.... ..+||+|+++
T Consensus 131 GcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~----~rV~F~~~Da~~~~~~----l~~FDlVF~~ 202 (296)
T PLN03075 131 GSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS----KRMFFHTADVMDVTES----LKEYDVVFLA 202 (296)
T ss_pred CCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc----CCcEEEECchhhcccc----cCCcCEEEEe
Confidence 5662 466665432 235799999999999999999964 5664 5688999999875322 2479999999
Q ss_pred C---C--CCCHHHHHHHHHhcccCCEEEEE
Q 019408 78 S---F--GSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 78 P---y--gsp~~fld~al~~v~~gGlL~vt 102 (341)
- | ..+...++...+.+++||+|.+-
T Consensus 203 ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 5 1 24557788888999999999983
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00051 Score=62.36 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=72.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.+++ .+. +++.+|.|+..++..++|+..+++ .++.+...|+.++.... ...||+|.+.-
T Consensus 54 ~G~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~~~~~~---~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 54 CGGGLLSEPLAR-LGA-NVTGIDASEENIEVAKLHAKKDPL-----LKIEYRCTSVEDLAEKG---AKSFDVVTCMEVLE 123 (224)
T ss_pred CCCCHHHHHHHh-cCC-eEEEEeCCHHHHHHHHHHHHHcCC-----CceEEEeCCHHHhhcCC---CCCccEEEehhHHH
Confidence 789999998877 465 599999999999999999987765 24677888988765321 35799998763
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
...+..++..+.+.+++||.+.++.
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 3445678888899999999998754
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00017 Score=73.40 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=70.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++..+++.|+ +|+++|+|+.+++..++|....+ .++++.++|+.... .....||+|..--
T Consensus 275 cG~G~~~~~la~~~~~-~v~gvDiS~~~l~~A~~~~~~~~------~~v~~~~~d~~~~~----~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 275 CGIGGGDFYMAENFDV-HVVGIDLSVNMISFALERAIGRK------CSVEFEVADCTKKT----YPDNSFDVIYSRDTIL 343 (475)
T ss_pred ccCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhhcCC------CceEEEEcCcccCC----CCCCCEEEEEECCccc
Confidence 6899999888875554 79999999999999999986332 35778899987532 1235799998742
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+..++..+.+.|++||.|+++.
T Consensus 344 h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 344 HIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred ccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 3345678889999999999999864
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00033 Score=63.72 Aligned_cols=95 Identities=18% Similarity=0.189 Sum_probs=72.2
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
||+|..++.++...+ ..+++++|+++.+++.+++|+..++.. ..+.+...|+.... .....||+|++.-
T Consensus 60 ~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~----~~~~~~D~I~~~~~l 131 (239)
T PRK00216 60 CGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS----GNVEFVQGDAEALP----FPDNSFDAVTIAFGL 131 (239)
T ss_pred CCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc----cCeEEEecccccCC----CCCCCccEEEEeccc
Confidence 789999999887422 378999999999999999999876542 35678888887642 2235799998643
Q ss_pred --CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 --FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 --ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+..+++.+.+++++||.+.+...
T Consensus 132 ~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 132 RNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred ccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 23456788899999999999886443
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00033 Score=65.35 Aligned_cols=92 Identities=15% Similarity=0.188 Sum_probs=68.5
Q ss_pred ccccHhHHHHhhh--CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 2 CGCGIRSLRYLAE--AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 2 agsG~rgir~a~e--~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
||+|..++..+.. ....+|+++|+|+.+++..++|++.++.. .+++++++|+..+. ...||+|++-.
T Consensus 65 cGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~----~~v~~~~~d~~~~~------~~~~D~vv~~~~ 134 (247)
T PRK15451 65 CSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP----TPVDVIEGDIRDIA------IENASMVVLNFT 134 (247)
T ss_pred ccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC----CCeEEEeCChhhCC------CCCCCEEehhhH
Confidence 7899988876652 12357999999999999999999987763 46888999987542 13589887643
Q ss_pred --CCCC---HHHHHHHHHhcccCCEEEEEe
Q 019408 79 --FGSD---SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 --ygsp---~~fld~al~~v~~gGlL~vt~ 103 (341)
|-.+ ..++....+.|++||.|.++.
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2211 256778888999999999853
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00016 Score=70.41 Aligned_cols=73 Identities=10% Similarity=-0.048 Sum_probs=50.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc-CCCCCCCccEEEE-eccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI-ERGSGDEKRWVVT-HFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n-~~~~~~~~~~~v~-~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+|||....-.+.....-+++++|+|+.|++.+++|++.| ++. +++++. +.|...++.......++||+|+..|
T Consensus 123 tGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~----~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNP 197 (321)
T PRK11727 123 VGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN----GAIRLRLQKDSKAIFKGIIHKNERFDATLCNP 197 (321)
T ss_pred CCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc----CcEEEEEccchhhhhhcccccCCceEEEEeCC
Confidence 455545444443222346999999999999999999999 785 567664 4565555543322356899999999
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00034 Score=64.79 Aligned_cols=92 Identities=17% Similarity=0.072 Sum_probs=64.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||..++..+...+..+|+++|+++..++.+.++++.. .++.++.+|+......... .+.||+|+.|- ..
T Consensus 81 ~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-------~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d~-~~ 151 (226)
T PRK04266 81 AASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-------KNIIPILADARKPERYAHV-VEKVDVIYQDV-AQ 151 (226)
T ss_pred cCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-------CCcEEEECCCCCcchhhhc-cccCCEEEECC-CC
Confidence 799999999877433358999999999999888888743 1356778888642110101 24699999874 11
Q ss_pred C---HHHHHHHHHhcccCCEEEEE
Q 019408 82 D---SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p---~~fld~al~~v~~gGlL~vt 102 (341)
| ..++..+.+.|++||.|+++
T Consensus 152 p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 152 PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 12467788899999999985
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00034 Score=61.93 Aligned_cols=100 Identities=21% Similarity=0.204 Sum_probs=56.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe-CC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI-DS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl-DP-y 79 (341)
||+|+-||-+++-.++.+|++-|.++ ++++++.|++.|+.. ...++.+...|=.+-+......+..||+|+. |- |
T Consensus 54 aG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~--~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y 130 (173)
T PF10294_consen 54 AGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSL--LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLY 130 (173)
T ss_dssp -TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-SSBSEEEEES--S
T ss_pred CccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccc--ccccccCcEEEecCcccccccccccCCEEEEecccc
Confidence 79999999999833788999999999 999999999998721 0134554443321111111123458997753 54 4
Q ss_pred CC--CHHHHHHHHHhcccCCEEEEEec
Q 019408 80 GS--DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gs--p~~fld~al~~v~~gGlL~vt~T 104 (341)
-. ..++++..-++++++|-+.+..+
T Consensus 131 ~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 131 DEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp -GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 32 12566666678888888776554
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00029 Score=66.49 Aligned_cols=73 Identities=23% Similarity=0.149 Sum_probs=56.6
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEE----eccHHHHHHHhhhcCCcccEEEe
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVT----HFDANRVLSECYLKREFFDLIDI 76 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~----~~DA~~~l~~~~~~~~~fDvIdl 76 (341)
++|||..++-.+...+-..|+|+|.|+.|+.+..+|++.+++. +.+.++ ..|+..-.. ....++|++.-
T Consensus 156 gtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~----g~i~v~~~~me~d~~~~~~---l~~~~~dllvs 228 (328)
T KOG2904|consen 156 GTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS----GRIEVIHNIMESDASDEHP---LLEGKIDLLVS 228 (328)
T ss_pred cCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc----CceEEEecccccccccccc---cccCceeEEec
Confidence 4799999999988655678999999999999999999999885 556666 445543322 22357999999
Q ss_pred CC-CC
Q 019408 77 DS-FG 80 (341)
Q Consensus 77 DP-yg 80 (341)
.| |-
T Consensus 229 NPPYI 233 (328)
T KOG2904|consen 229 NPPYI 233 (328)
T ss_pred CCCcc
Confidence 98 64
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.53 E-value=6.8e-05 Score=74.34 Aligned_cols=57 Identities=23% Similarity=0.176 Sum_probs=52.0
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHH
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLS 62 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~ 62 (341)
|||.|-+++-++++ | .+|++||.|++++++++.|+++|.+. ...++++++||.++|+
T Consensus 257 FaGvGPfa~Pa~kK-~-crV~aNDLNpesik~Lk~ni~lNkv~---~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 257 FAGVGPFALPAAKK-G-CRVYANDLNPESIKWLKANIKLNKVD---PSAIEIFNMDAKDFLR 313 (495)
T ss_pred hcCcCccccchhhc-C-cEEEecCCCHHHHHHHHHhccccccc---hhheeeecccHHHHhh
Confidence 79999999999996 5 78999999999999999999999995 3458999999999996
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00019 Score=72.85 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=71.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcC-Cccc-EEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKR-EFFD-LIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~-~~fD-vIdlDP 78 (341)
++|||..|+-.++ ++++|+.++++++|++-+++|++.||++ +.+++++-|.+++..+.... ..=+ ++++||
T Consensus 391 ~CGTG~iglala~--~~~~ViGvEi~~~aV~dA~~nA~~Ngis-----Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDP 463 (534)
T KOG2187|consen 391 CCGTGTIGLALAR--GVKRVIGVEISPDAVEDAEKNAQINGIS-----NATFIVGQAEDLFPSLLTPCCDSETLVAIIDP 463 (534)
T ss_pred eecCCceehhhhc--cccceeeeecChhhcchhhhcchhcCcc-----ceeeeecchhhccchhcccCCCCCceEEEECC
Confidence 5899999987764 8999999999999999999999999994 78899999999988765431 1235 889999
Q ss_pred --CCCCHHHHHHHHHhcc-cCCEEEEEe
Q 019408 79 --FGSDSSFLRTVFNAVK-RDGLLYLTS 103 (341)
Q Consensus 79 --ygsp~~fld~al~~v~-~gGlL~vt~ 103 (341)
=|--..+ ..+++..+ ..-+++++|
T Consensus 464 pR~Glh~~~-ik~l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 464 PRKGLHMKV-IKALRAYKNPRRLVYVSC 490 (534)
T ss_pred CcccccHHH-HHHHHhccCccceEEEEc
Confidence 2322223 34444444 566888865
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00059 Score=63.85 Aligned_cols=93 Identities=19% Similarity=0.186 Sum_probs=74.5
Q ss_pred ccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
.|||.++.-.|.- ....+|+..|+.++-.+.+++|++..++. +.+++..+|+.+.... +.||.|+||=--
T Consensus 103 tGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~----d~v~~~~~Dv~~~~~~-----~~vDav~LDmp~ 173 (256)
T COG2519 103 TGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG----DRVTLKLGDVREGIDE-----EDVDAVFLDLPD 173 (256)
T ss_pred cCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc----cceEEEeccccccccc-----cccCEEEEcCCC
Confidence 4788888777743 23478999999999999999999988884 4577788999877643 489999999622
Q ss_pred CCHHHHHHHHHhcccCCEEEEEec
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~T 104 (341)
|-.+++.+-.+|++||.+++-+.
T Consensus 174 -PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 174 -PWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred -hHHHHHHHHHHhCCCcEEEEEcC
Confidence 34679999999999999997543
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0003 Score=65.45 Aligned_cols=94 Identities=19% Similarity=0.184 Sum_probs=66.8
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
||||..+++.+...+. .+|+++|+|+.-++..++.++..+. .+++.+++||.++-. ..+.||+|.+==
T Consensus 56 ~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-----~~i~~v~~da~~lp~----~d~sfD~v~~~fgl 126 (233)
T PF01209_consen 56 CGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-----QNIEFVQGDAEDLPF----PDNSFDAVTCSFGL 126 (233)
T ss_dssp -TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB--S-----TT-EEEEEEES-G
T ss_pred CChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-----CCeeEEEcCHHHhcC----CCCceeEEEHHhhH
Confidence 7999999999875443 5899999999999999999997766 378899999987532 246899996421
Q ss_pred --CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 --FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 --ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+...+....+.||+||.+++...
T Consensus 127 rn~~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 127 RNFPDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp GG-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhhCCHHHHHHHHHHHcCCCeEEEEeec
Confidence 22234677888999999999997654
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00048 Score=64.10 Aligned_cols=90 Identities=21% Similarity=0.173 Sum_probs=56.6
Q ss_pred hHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCC--CH
Q 019408 7 RSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FGS--DS 83 (341)
Q Consensus 7 rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygs--p~ 83 (341)
.||-.+.....++|+.+|+++.-++.|++.++..++ .++..+.|..+-|-... ..+||+++.|| |.- -.
T Consensus 57 tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl------~i~~~~~DlR~~LP~~~--~~~fD~f~TDPPyT~~G~~ 128 (243)
T PF01861_consen 57 TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL------PIEAVHYDLRDPLPEEL--RGKFDVFFTDPPYTPEGLK 128 (243)
T ss_dssp HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE---TTS---TTT--SS-BSEEEE---SSHHHHH
T ss_pred HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC------ceEEEEecccccCCHHH--hcCCCEEEeCCCCCHHHHH
Confidence 456666644568999999999999999999999988 48889999998886543 35899999999 542 13
Q ss_pred HHHHHHHHhcccCC-EEEEEec
Q 019408 84 SFLRTVFNAVKRDG-LLYLTST 104 (341)
Q Consensus 84 ~fld~al~~v~~gG-lL~vt~T 104 (341)
-|+.+++++|+..| ..++..|
T Consensus 129 LFlsRgi~~Lk~~g~~gy~~~~ 150 (243)
T PF01861_consen 129 LFLSRGIEALKGEGCAGYFGFT 150 (243)
T ss_dssp HHHHHHHHTB-STT-EEEEEE-
T ss_pred HHHHHHHHHhCCCCceEEEEEe
Confidence 57889999999777 5555443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0011 Score=63.33 Aligned_cols=95 Identities=21% Similarity=0.154 Sum_probs=72.7
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||-|.-+...+.-.+ -..|+++|+++.-++.+++|++..|+. .+.+.+.|+........ +..||.|.+|+--
T Consensus 94 AapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-----~v~~~~~D~~~~~~~~~--~~~fd~VlvDaPC 166 (283)
T PF01189_consen 94 AAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-----NVIVINADARKLDPKKP--ESKFDRVLVDAPC 166 (283)
T ss_dssp CTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-----SEEEEESHHHHHHHHHH--TTTEEEEEEECSC
T ss_pred cCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-----eEEEEeecccccccccc--ccccchhhcCCCc
Confidence 788888887766433 578999999999999999999999883 67777899998865442 3369999999842
Q ss_pred CCH--------------------------HHHHHHHHhc----ccCCEEEEEec
Q 019408 81 SDS--------------------------SFLRTVFNAV----KRDGLLYLTST 104 (341)
Q Consensus 81 sp~--------------------------~fld~al~~v----~~gGlL~vt~T 104 (341)
|.. ..|+.|++.+ ++||.|.- +|
T Consensus 167 Sg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvY-sT 219 (283)
T PF01189_consen 167 SGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVY-ST 219 (283)
T ss_dssp CCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEE-EE
T ss_pred cchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEE-Ee
Confidence 211 2335888999 99999885 55
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00057 Score=67.03 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=68.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||||..++.+++..+..+|+++|.|+..++.+++|...+ +++++.+|+.++- .....||+|+...
T Consensus 122 cGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~--------~i~~i~gD~e~lp----~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 122 GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--------ECKIIEGDAEDLP----FPTDYADRYVSAGSIE 189 (340)
T ss_pred cCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc--------CCeEEeccHHhCC----CCCCceeEEEEcChhh
Confidence 699999999887544568999999999999999987633 3457889987531 2245799888754
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+...++.+.+.|++||.+++..
T Consensus 190 ~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 190 YWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 2234567888999999999999853
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00042 Score=65.37 Aligned_cols=90 Identities=14% Similarity=0.133 Sum_probs=66.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe-CC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI-DS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl-DP-y 79 (341)
||+|..+...+...+ .+|+++|+|+..++.+++++... .++.+.+.|+... ......||+|.. |- +
T Consensus 61 cG~G~~a~~la~~~~-~~v~giD~s~~~~~~a~~~~~~~-------~~i~~~~~D~~~~----~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 61 SGLGGGCKYINEKYG-AHVHGVDICEKMVNIAKLRNSDK-------NKIEFEANDILKK----DFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCChhhHHHHhhcC-CEEEEEECCHHHHHHHHHHcCcC-------CceEEEECCcccC----CCCCCCeEEEEEhhhHH
Confidence 689998887776434 47999999999999999987531 3567788887632 122457999987 43 1
Q ss_pred C----CCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 G----SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 g----sp~~fld~al~~v~~gGlL~vt~ 103 (341)
. .+..++..+.+.|++||.|.++.
T Consensus 129 h~~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 129 HLSYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 1 23467788889999999999854
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00017 Score=64.64 Aligned_cols=86 Identities=22% Similarity=0.213 Sum_probs=66.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe---CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI---DS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl---DP 78 (341)
||||+++.-++. .|++|++++.||.-..++++|+..++. ++++++.+||..+=. ++.|+|.. |-
T Consensus 41 aGsGiLs~~Aa~--~A~rViAiE~dPk~a~~a~eN~~v~g~-----~n~evv~gDA~~y~f------e~ADvvicEmlDT 107 (252)
T COG4076 41 AGSGILSVVAAH--AAERVIAIEKDPKRARLAEENLHVPGD-----VNWEVVVGDARDYDF------ENADVVICEMLDT 107 (252)
T ss_pred CCcchHHHHHHh--hhceEEEEecCcHHHHHhhhcCCCCCC-----cceEEEecccccccc------cccceeHHHHhhH
Confidence 799999999887 389999999999999999999998887 478999999987532 24687742 21
Q ss_pred ---CCCCHHHHHHHHHhcccCCEEE
Q 019408 79 ---FGSDSSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 79 ---ygsp~~fld~al~~v~~gGlL~ 100 (341)
--.-.|-+.++++.|+.++-+.
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCccc
Confidence 0002366778888888877665
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00088 Score=63.15 Aligned_cols=96 Identities=15% Similarity=0.143 Sum_probs=68.4
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
||||..++..+...+. .+|+++|+|++.++.++++....... ...++++.++|+.++ ....+.||+|.+-=
T Consensus 82 cGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~--~~~~i~~~~~d~~~l----p~~~~sfD~V~~~~~l 155 (261)
T PLN02233 82 CGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS--CYKNIEWIEGDATDL----PFDDCYFDAITMGYGL 155 (261)
T ss_pred CcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc--cCCCeEEEEcccccC----CCCCCCEeEEEEeccc
Confidence 7999988877764343 48999999999999998876421100 013578889998754 22345799997631
Q ss_pred --CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 --FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 --ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+..++..+.+.|++||.|++..
T Consensus 156 ~~~~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 156 RNVVDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred ccCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 2234577889999999999998753
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00029 Score=68.53 Aligned_cols=89 Identities=26% Similarity=0.247 Sum_probs=72.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||+.|+-+|+ +||.+|+++|.|.-| +..++.++.|+++ +.++++++.+.++ ++ .-++.|+|+-.=.|.
T Consensus 69 cGtGILS~F~ak-AGA~~V~aVe~S~ia-~~a~~iv~~N~~~----~ii~vi~gkvEdi--~L--P~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 69 CGTGILSMFAAK-AGARKVYAVEASSIA-DFARKIVKDNGLE----DVITVIKGKVEDI--EL--PVEKVDIIVSEWMGY 138 (346)
T ss_pred CCccHHHHHHHH-hCcceEEEEechHHH-HHHHHHHHhcCcc----ceEEEeecceEEE--ec--CccceeEEeehhhhH
Confidence 799999999999 799999999999998 9999999999995 6789999988876 33 247899999887665
Q ss_pred CH---HHHHHHH----HhcccCCEEE
Q 019408 82 DS---SFLRTVF----NAVKRDGLLY 100 (341)
Q Consensus 82 p~---~fld~al----~~v~~gGlL~ 100 (341)
.- ..+|+.+ +-|++||+++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 31 2345554 4589999998
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00039 Score=64.57 Aligned_cols=86 Identities=22% Similarity=0.169 Sum_probs=63.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..+..++. .| .+|+++|+|+.+++..++|... ..++++|+..+- .....||+|.... +
T Consensus 51 cG~G~~~~~l~~-~~-~~v~~~D~s~~~l~~a~~~~~~----------~~~~~~d~~~~~----~~~~~fD~V~s~~~l~ 114 (251)
T PRK10258 51 CGPGWMSRYWRE-RG-SQVTALDLSPPMLAQARQKDAA----------DHYLAGDIESLP----LATATFDLAWSNLAVQ 114 (251)
T ss_pred CCCCHHHHHHHH-cC-CeEEEEECCHHHHHHHHhhCCC----------CCEEEcCcccCc----CCCCcEEEEEECchhh
Confidence 689988777665 56 5799999999999999887531 235678876532 2245799998865 2
Q ss_pred --CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 --GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 --gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
..+..++..+.+.+++||.++++.
T Consensus 115 ~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 115 WCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred hcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 234567888899999999999853
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00073 Score=61.13 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=73.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||.|.+.-+.|. + .++++++|+|+.|++..++-+. +. ..+++.+.|.-.+. ...+||+|++=-
T Consensus 52 Cs~G~lT~~LA~-r-Cd~LlavDis~~Al~~Ar~Rl~--~~-----~~V~~~~~dvp~~~-----P~~~FDLIV~SEVlY 117 (201)
T PF05401_consen 52 CSIGVLTERLAP-R-CDRLLAVDISPRALARARERLA--GL-----PHVEWIQADVPEFW-----PEGRFDLIVLSEVLY 117 (201)
T ss_dssp -TTSHHHHHHGG-G-EEEEEEEES-HHHHHHHHHHTT--T------SSEEEEES-TTT--------SS-EEEEEEES-GG
T ss_pred CCccHHHHHHHH-h-hCceEEEeCCHHHHHHHHHhcC--CC-----CCeEEEECcCCCCC-----CCCCeeEEEEehHhH
Confidence 578999999876 4 5889999999999999999776 33 36889999987654 346899987765
Q ss_pred CCCCHH----HHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHH
Q 019408 79 FGSDSS----FLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVRE 146 (341)
Q Consensus 79 ygsp~~----fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~ 146 (341)
|-++.+ +++....+|++||.|.+ +| .....|.+ . -|..|.+.++..+.++
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~-g~-------~rd~~c~~-w---------gh~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVF-GH-------ARDANCRR-W---------GHAAGAETVLEMLQEH 171 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEE-EE-------E-HHHHHH-T---------T-S--HHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEE-EE-------ecCCcccc-c---------CcccchHHHHHHHHHH
Confidence 444433 56677789999999997 32 23445555 2 3556777666655543
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0014 Score=59.18 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=70.2
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||+|..++.++...+ ..+|+++|+|+..++.+++|..... .++++...|+..+- .....||+|...- +
T Consensus 28 ~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~----~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 28 CGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG------PNVEFVRGDADGLP----FPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC------CceEEEecccccCC----CCCCCceEEEEechh
Confidence 789999998887432 4689999999999999999843221 35677788876431 1235799998864 2
Q ss_pred ---CCCHHHHHHHHHhcccCCEEEEEecC
Q 019408 80 ---GSDSSFLRTVFNAVKRDGLLYLTSTD 105 (341)
Q Consensus 80 ---gsp~~fld~al~~v~~gGlL~vt~TD 105 (341)
..+..++..+.++|++||.|.+...+
T Consensus 98 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 98 QHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred hccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 33567888999999999999987654
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0013 Score=69.14 Aligned_cols=95 Identities=18% Similarity=0.185 Sum_probs=70.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..+...+......+|+++|+|+.+++.+++|+..++. ++.++++|+.++-.. .....||+|+.-+ +.
T Consensus 427 CGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~------~ie~I~gDa~dLp~~--fedeSFDvVVsn~vLH 498 (677)
T PRK06922 427 AGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR------SWNVIKGDAINLSSS--FEKESVDTIVYSSILH 498 (677)
T ss_pred CCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------CeEEEEcchHhCccc--cCCCCEEEEEEchHHH
Confidence 79999988887643345899999999999999999875543 467789999874211 1245799998654 11
Q ss_pred ----------------CCHHHHHHHHHhcccCCEEEEEec
Q 019408 81 ----------------SDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 ----------------sp~~fld~al~~v~~gGlL~vt~T 104 (341)
.+..++..+.+.|++||.+.+...
T Consensus 499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 124667788899999999998543
|
|
| >COG3286 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0012 Score=58.92 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=49.7
Q ss_pred HHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCCCceecCCCHHHHHHHHHhhhh
Q 019408 259 LEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQG 337 (341)
Q Consensus 259 ~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~~~iKTdAp~~~i~~i~~~~~~ 337 (341)
++.+....+.+...+.-+ -|++..++. .+.+..|.+.++.+|+-+||++-.- .+ =|||||||+++.++.+++.+
T Consensus 57 irel~~~vr~r~~~~~~~-ly~l~~~~~-~a~p~Vp~~vl~daLk~~GyrVevr--~~-~l~T~ap~~ev~E~vreLse 130 (204)
T COG3286 57 IRELHRRVRRRLYPDRQG-LYTLYRIFE-EASPNVPPDVLIDALKLLGYRVEVR--GG-ELKTNAPWSEVVELVRELSE 130 (204)
T ss_pred HHHHHHHHHhhhccCccc-eEeeHhHHH-hhcCCCCHHHHHHHHHhCCceEEee--Cc-eeecCCCHHHHHHHHHHHHH
Confidence 344444443333233323 466665544 3445456899999999999997642 22 29999999999999998874
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00043 Score=64.99 Aligned_cols=93 Identities=23% Similarity=0.232 Sum_probs=66.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCC-CccEEEEeccHHHHHHHhhhcCCcccEEEe-CC-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGD-EKRWVVTHFDANRVLSECYLKREFFDLIDI-DS- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~-~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl-DP- 78 (341)
||+|+.++-.|+. |+ .|+.+|+++++++.+++-.+.+-+..++ .-+++..+.|+..+ ..+||.|.. +=
T Consensus 98 CGgGLLSepLArl-ga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~-------~~~fDaVvcsevl 168 (282)
T KOG1270|consen 98 CGGGLLSEPLARL-GA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL-------TGKFDAVVCSEVL 168 (282)
T ss_pred cCccccchhhHhh-CC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc-------ccccceeeeHHHH
Confidence 7999999999994 75 6999999999999999986654332000 01244556666543 236997742 11
Q ss_pred --CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 --FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 --ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..|..|++...+.+++||-|.+|.
T Consensus 169 eHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 169 EHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred HHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 3335699999999999999999954
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0015 Score=58.70 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=68.2
Q ss_pred ccccHhHHHHhhhCCC--CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC--
Q 019408 2 CGCGIRSLRYLAEAKA--DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID-- 77 (341)
Q Consensus 2 agsG~rgir~a~e~ga--~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD-- 77 (341)
+|+|..+..++.. +. .+++++|+|+.+++.+++|+. .. .++++..+|+.+.. .....||+|.+.
T Consensus 48 ~G~G~~~~~~~~~-~~~~~~~~~iD~~~~~~~~~~~~~~---~~----~~i~~~~~d~~~~~----~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 48 CGTGDLAIELAKS-APDRGKVTGVDFSSEMLEVAKKKSE---LP----LNIEFIQADAEALP----FEDNSFDAVTIAFG 115 (223)
T ss_pred CCCChhHHHHHHh-cCCCceEEEEECCHHHHHHHHHHhc---cC----CCceEEecchhcCC----CCCCcEEEEEEeee
Confidence 6899999888874 44 489999999999999999886 11 35677889987643 123579998652
Q ss_pred --CCCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 78 --SFGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 78 --Pygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
.+..+..+++.+.+.|++||.+.+..
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 23345677889999999999999743
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00019 Score=68.80 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=66.6
Q ss_pred CccccHhHHHHhhh-------CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccE
Q 019408 1 MCGCGIRSLRYLAE-------AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDL 73 (341)
Q Consensus 1 fagsG~rgir~a~e-------~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDv 73 (341)
.||||.+-+++... .....++.+|+++.++.+.+.|+.+.+.. .....+.++|.+..-. .....+||+
T Consensus 54 acGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~---~~~~~i~~~d~l~~~~--~~~~~~~D~ 128 (311)
T PF02384_consen 54 ACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID---NSNINIIQGDSLENDK--FIKNQKFDV 128 (311)
T ss_dssp T-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH---CBGCEEEES-TTTSHS--CTST--EEE
T ss_pred hhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc---cccccccccccccccc--ccccccccc
Confidence 48999998777651 24567999999999999999999887653 1233577888754321 112458999
Q ss_pred EEeCC-CCCC------------------------HHHHHHHHHhcccCCEEEE
Q 019408 74 IDIDS-FGSD------------------------SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 74 IdlDP-ygsp------------------------~~fld~al~~v~~gGlL~v 101 (341)
|+..| ||.. ..|+..+++.|++||.+++
T Consensus 129 ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 129 IIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp EEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 99999 8754 1488899999999998775
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00085 Score=53.42 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=61.1
Q ss_pred ccccHhHHHHhhhC--CC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe-C
Q 019408 2 CGCGIRSLRYLAEA--KA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI-D 77 (341)
Q Consensus 2 agsG~rgir~a~e~--ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl-D 77 (341)
||+|......+.-. |. .+++++|+|+++++.++++.+..+. ++++++.|+.++-. ...+||+|+. .
T Consensus 6 cG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~------~~~~~~~D~~~l~~----~~~~~D~v~~~~ 75 (101)
T PF13649_consen 6 CGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP------KVRFVQADARDLPF----SDGKFDLVVCSG 75 (101)
T ss_dssp -TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT------TSEEEESCTTCHHH----HSSSEEEEEE-T
T ss_pred cCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC------ceEEEECCHhHCcc----cCCCeeEEEEcC
Confidence 68888777776532 43 7899999999999999999987554 46789999987532 2458999988 3
Q ss_pred C---CCCC---HHHHHHHHHhcccCC
Q 019408 78 S---FGSD---SSFLRTVFNAVKRDG 97 (341)
Q Consensus 78 P---ygsp---~~fld~al~~v~~gG 97 (341)
- |-++ ..+++...+.+++||
T Consensus 76 ~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 76 LSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3 3322 345677778888887
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0019 Score=64.32 Aligned_cols=86 Identities=19% Similarity=0.203 Sum_probs=65.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..++.+++..|+ +|+++|+|++.++.+++|++ ++ .+++...|+..+ ...||.|..-. |
T Consensus 176 cG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l------~v~~~~~D~~~l-------~~~fD~Ivs~~~~e 239 (383)
T PRK11705 176 CGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GL------PVEIRLQDYRDL-------NGQFDRIVSVGMFE 239 (383)
T ss_pred CCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cC------eEEEEECchhhc-------CCCCCEEEEeCchh
Confidence 6899999999875555 79999999999999999985 32 356778887643 24799886433 2
Q ss_pred --CC--CHHHHHHHHHhcccCCEEEEEe
Q 019408 80 --GS--DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 --gs--p~~fld~al~~v~~gGlL~vt~ 103 (341)
|. ...++..+.+.|++||.+.++.
T Consensus 240 hvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 240 HVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred hCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 21 1367788889999999999854
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0027 Score=60.10 Aligned_cols=88 Identities=11% Similarity=0.044 Sum_probs=61.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc--CCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI--ERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n--~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|-|.-.=|.++- .++|+++|||++.+++.++-+-.. .++ +.+++++. .+.+ ...++||||++|- |
T Consensus 82 GDGg~~REvLkh--~~~v~mVeID~~Vv~~~k~~lP~~~~~~~---DpRv~l~~-----~~~~--~~~~~fDVIIvDs~~ 149 (262)
T PRK00536 82 FDLELAHQLFKY--DTHVDFVQADEKILDSFISFFPHFHEVKN---NKNFTHAK-----QLLD--LDIKKYDLIICLQEP 149 (262)
T ss_pred CchHHHHHHHCc--CCeeEEEECCHHHHHHHHHHCHHHHHhhc---CCCEEEee-----hhhh--ccCCcCCEEEEcCCC
Confidence 456655566663 248999999999999999944422 232 24666664 1222 1236899999994 5
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEec
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~T 104 (341)
. ..|....-++|++||++++.++
T Consensus 150 ~--~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 150 D--IHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred C--hHHHHHHHHhcCCCcEEEECCC
Confidence 5 3888888999999999998654
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0014 Score=61.27 Aligned_cols=85 Identities=9% Similarity=0.030 Sum_probs=62.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..+..++......+|+.+|+|+..++.++++ ++ ++.++|+..+. ....||+|+... +
T Consensus 38 cG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~~--------~~~~~d~~~~~-----~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 38 CGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----GV--------DARTGDVRDWK-----PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----CC--------cEEEcChhhCC-----CCCCceEEEEehhhh
Confidence 79999988777632234799999999999988662 23 46788987542 134799999876 2
Q ss_pred --CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 --GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 --gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
..+..++..+.+.|++||.+.++.
T Consensus 101 ~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 101 WVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 223567778889999999999853
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0035 Score=61.04 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=65.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC-C-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID-S-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD-P-y 79 (341)
||+|..+++++. .|+..|+.+|.|+..+...+...+..+.. .++++...|+..+- . ...||+|+.= = |
T Consensus 131 CG~G~~~~~la~-~g~~~V~GiD~S~~~l~q~~a~~~~~~~~----~~i~~~~~d~e~lp----~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 131 CGNGYHMWRMLG-AGAKLVVGIDPSQLFLCQFEAVRKLLGND----QRAHLLPLGIEQLP----A-LKAFDTVFSMGVLY 200 (322)
T ss_pred cCCcHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHHHHhcCCC----CCeEEEeCCHHHCC----C-cCCcCEEEECChhh
Confidence 799999999988 58888999999998765433332222211 35778888886541 1 4579999862 1 1
Q ss_pred --CCCHHHHHHHHHhcccCCEEEEE
Q 019408 80 --GSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 --gsp~~fld~al~~v~~gGlL~vt 102 (341)
.+|..++..+.+.|++||.|.++
T Consensus 201 H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 201 HRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 23567888999999999999875
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0024 Score=58.97 Aligned_cols=92 Identities=12% Similarity=0.180 Sum_probs=68.3
Q ss_pred ccccHhHHHHhhhC--CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC-C
Q 019408 2 CGCGIRSLRYLAEA--KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID-S 78 (341)
Q Consensus 2 agsG~rgir~a~e~--ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD-P 78 (341)
||+|..++..+... ...+|+.+|+|+.+++.+++|++..+.. .+++++++|+..+- ...+|+|++. .
T Consensus 62 cG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~----~~v~~~~~d~~~~~------~~~~d~v~~~~~ 131 (239)
T TIGR00740 62 CSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE----IPVEILCNDIRHVE------IKNASMVILNFT 131 (239)
T ss_pred CCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC----CCeEEEECChhhCC------CCCCCEEeeecc
Confidence 68999888887631 2357999999999999999999865432 46788999997642 1258977653 2
Q ss_pred --CCC---CHHHHHHHHHhcccCCEEEEEe
Q 019408 79 --FGS---DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 --ygs---p~~fld~al~~v~~gGlL~vt~ 103 (341)
|-. +..++..+.+.|++||.++++.
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 332 2457788889999999999864
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0025 Score=61.83 Aligned_cols=92 Identities=18% Similarity=0.180 Sum_probs=65.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|...++++. .|+.+|+.+|.|+..+...+..-+..+. ...+.+...|+.++-. ...||+|+.==
T Consensus 130 CG~G~~~~~~~~-~g~~~v~GiDpS~~ml~q~~~~~~~~~~----~~~v~~~~~~ie~lp~-----~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 130 CGSGYHMWRMLG-HGAKSLVGIDPTVLFLCQFEAVRKLLDN----DKRAILEPLGIEQLHE-----LYAFDTVFSMGVLY 199 (314)
T ss_pred cCCcHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHHHHHhcc----CCCeEEEECCHHHCCC-----CCCcCEEEEcchhh
Confidence 799999999988 5888999999999887654332222111 1345667777765421 23799997532
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
..+|..++....+.|++||.|+++.
T Consensus 200 H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 200 HRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred ccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 2456678889999999999999853
|
Known examples to date are restricted to the proteobacteria. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0027 Score=57.46 Aligned_cols=100 Identities=19% Similarity=0.163 Sum_probs=74.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE---EeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI---DIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI---dlDP 78 (341)
||.|-+-+..|.+.--..++.+|++...+..+.+.+...++ .++.++++||..+|..... ....|-| +-||
T Consensus 26 ~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-----~Nv~~~~~da~~~l~~~~~-~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 26 CGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-----KNVRFLRGDARELLRRLFP-PGSVDRIYINFPDP 99 (195)
T ss_dssp -TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-----SSEEEEES-CTTHHHHHST-TTSEEEEEEES---
T ss_pred CCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-----cceEEEEccHHHHHhhccc-CCchheEEEeCCCC
Confidence 68999999999974345689999999999999999998888 4788999999999987644 3467755 5589
Q ss_pred CCC---------CHHHHHHHHHhcccCCEEEEEecCCCC
Q 019408 79 FGS---------DSSFLRTVFNAVKRDGLLYLTSTDGYS 108 (341)
Q Consensus 79 ygs---------p~~fld~al~~v~~gGlL~vt~TD~~~ 108 (341)
.-+ ..+|++...+.|++||.|.+ .||-..
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~-~TD~~~ 137 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYF-ATDVEE 137 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE-EES-HH
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEE-EeCCHH
Confidence 322 34899999999999999998 887644
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0015 Score=59.11 Aligned_cols=89 Identities=22% Similarity=0.202 Sum_probs=66.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..+...+......+++++|+|+..++..++++.. ++.++..|+.... ...+.||+|+..=
T Consensus 43 ~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~---------~~~~~~~d~~~~~----~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 43 CGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE---------NVQFICGDAEKLP----LEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC---------CCeEEecchhhCC----CCCCceeEEEEhhhhh
Confidence 79999998887742235689999999999988876541 3456788887542 1245799998763
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
...+..+++.+.+.|++||.++++.
T Consensus 110 ~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 110 WCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 1235678889999999999999853
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0022 Score=61.00 Aligned_cols=89 Identities=19% Similarity=0.244 Sum_probs=66.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccE-EEeCC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDL-IDIDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDv-IdlDP-- 78 (341)
||.|..++++|.+.|+ +|+.+.+|++-++.+++-++..++. +++++...|..++ ..+||. |=++-
T Consensus 71 cGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~----~~v~v~~~D~~~~-------~~~fD~IvSi~~~E 138 (273)
T PF02353_consen 71 CGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLE----DRVEVRLQDYRDL-------PGKFDRIVSIEMFE 138 (273)
T ss_dssp -TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSS----STEEEEES-GGG----------S-SEEEEESEGG
T ss_pred CCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCC----CceEEEEeecccc-------CCCCCEEEEEechh
Confidence 6899999999986576 6999999999999999999988885 6788999997653 228995 55555
Q ss_pred -CCCC--HHHHHHHHHhcccCCEEEEE
Q 019408 79 -FGSD--SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 -ygsp--~~fld~al~~v~~gGlL~vt 102 (341)
+|.. ..|+..+-+.|++||.+.+.
T Consensus 139 hvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 139 HVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp GTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred hcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 3422 36788888999999999964
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0011 Score=59.96 Aligned_cols=91 Identities=20% Similarity=0.154 Sum_probs=69.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--y 79 (341)
||||+-+|-+++ .||..|++.|++|.+...|+.|++.|++ .+.++..|..- +...||+|.+-- |
T Consensus 88 agsgLvaIAaa~-aGA~~v~a~d~~P~~~~ai~lNa~angv------~i~~~~~d~~g-------~~~~~Dl~LagDlfy 153 (218)
T COG3897 88 AGSGLVAIAAAR-AGAAEVVAADIDPWLEQAIRLNAAANGV------SILFTHADLIG-------SPPAFDLLLAGDLFY 153 (218)
T ss_pred cccChHHHHHHH-hhhHHHHhcCCChHHHHHhhcchhhccc------eeEEeeccccC-------CCcceeEEEeeceec
Confidence 799999999999 7999999999999999999999999987 46677777642 356899887755 6
Q ss_pred CCCHHHHHH---HHHhcccCCEEEEEecCCCC
Q 019408 80 GSDSSFLRT---VFNAVKRDGLLYLTSTDGYS 108 (341)
Q Consensus 80 gsp~~fld~---al~~v~~gGlL~vt~TD~~~ 108 (341)
.. ++.+. -+..++..|.-.+-.+-.++
T Consensus 154 ~~--~~a~~l~~~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 154 NH--TEADRLIPWKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred Cc--hHHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 65 44333 34456666666664554443
|
|
| >PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0037 Score=56.45 Aligned_cols=75 Identities=20% Similarity=0.332 Sum_probs=58.0
Q ss_pred HHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCCCceecCCCHHHHHHHHHhhhhh
Q 019408 259 LEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQGC 338 (341)
Q Consensus 259 ~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~~~iKTdAp~~~i~~i~~~~~~~ 338 (341)
++.+.+.++.... ..+.+=|.++.|.+..+ .+.|++.++++|+-+||++. +...-|+||||++++.++++++.+.
T Consensus 54 Ik~~~~~vr~k~~-~~g~~~y~l~~i~r~a~-~~vp~d~L~~~L~~~G~~ae---~~~~~i~T~a~~eev~~l~~~Lse~ 128 (190)
T PF09840_consen 54 IKELVRRVRSKYN-KRGLYRYSLDDIFREAG-YPVPPDLLVDALKLLGYKAE---YREDVIKTDAPLEEVVELAERLSEI 128 (190)
T ss_pred HHHHHHHHHHHhc-cCCceEEcHHHHHHHcC-CCCCHHHHHHHHHhCCCeeE---EeCCeEEecCCHHHHHHHHHHHHHH
Confidence 4555555553111 23456799999999999 56668999999999999986 4555999999999999999988753
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00073 Score=61.09 Aligned_cols=93 Identities=19% Similarity=0.106 Sum_probs=60.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC---C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---S 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---P 78 (341)
||.|--|+-.|+ .|.+ |+++|+|+.|++.+++-++..++ .++....|.+.+- -.+.||+|... .
T Consensus 39 cG~GRNalyLA~-~G~~-VtAvD~s~~al~~l~~~a~~~~l------~i~~~~~Dl~~~~-----~~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 39 CGEGRNALYLAS-QGFD-VTAVDISPVALEKLQRLAEEEGL------DIRTRVADLNDFD-----FPEEYDFIVSTVVFM 105 (192)
T ss_dssp -TTSHHHHHHHH-TT-E-EEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCCBS------TTTEEEEEEESSGG
T ss_pred CCCcHHHHHHHH-CCCe-EEEEECCHHHHHHHHHHHhhcCc------eeEEEEecchhcc-----ccCCcCEEEEEEEec
Confidence 688989988887 6875 99999999999999998888777 3677788865432 13579999643 1
Q ss_pred CCCCH---HHHHHHHHhcccCCEEEE-EecCCC
Q 019408 79 FGSDS---SFLRTVFNAVKRDGLLYL-TSTDGY 107 (341)
Q Consensus 79 ygsp~---~fld~al~~v~~gGlL~v-t~TD~~ 107 (341)
|-.+. ..++.--+.+++||+..+ |..++.
T Consensus 106 fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~ 138 (192)
T PF03848_consen 106 FLQRELRPQIIENMKAATKPGGYNLIVTFMETP 138 (192)
T ss_dssp GS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--S
T ss_pred cCCHHHHHHHHHHHHhhcCCcEEEEEEEecccC
Confidence 33221 123333456889999775 665543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0016 Score=59.71 Aligned_cols=91 Identities=15% Similarity=0.093 Sum_probs=65.4
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+|||..+--.+.-.|. .+|+.+|+++..++..++|++.++. .++++.++|...-+.. ...||.|++..-.
T Consensus 81 tGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-----~nv~~~~gdg~~g~~~----~apfD~I~v~~a~ 151 (209)
T PF01135_consen 81 TGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-----DNVEVVVGDGSEGWPE----EAPFDRIIVTAAV 151 (209)
T ss_dssp -TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-----HSEEEEES-GGGTTGG----G-SEEEEEESSBB
T ss_pred CCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-----CceeEEEcchhhcccc----CCCcCEEEEeecc
Confidence 6888887766653343 4699999999999999999999887 4788999998754432 3479999999721
Q ss_pred CCHHHH-HHHHHhcccCCEEEEEec
Q 019408 81 SDSSFL-RTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 sp~~fl-d~al~~v~~gGlL~vt~T 104 (341)
+-+ +.-++.|++||.|.+--.
T Consensus 152 ---~~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 152 ---PEIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp ---SS--HHHHHTEEEEEEEEEEES
T ss_pred ---chHHHHHHHhcCCCcEEEEEEc
Confidence 222 233467999999997443
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0017 Score=59.38 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=65.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|||--+--.++ . +.+|+.+|+.+.-++.+++|++.++.. ++.+.++|...-+.. ...||.|++.--..
T Consensus 81 tGsGY~aAvla~-l-~~~V~siEr~~~L~~~A~~~L~~lg~~-----nV~v~~gDG~~G~~~----~aPyD~I~Vtaaa~ 149 (209)
T COG2518 81 TGSGYQAAVLAR-L-VGRVVSIERIEELAEQARRNLETLGYE-----NVTVRHGDGSKGWPE----EAPYDRIIVTAAAP 149 (209)
T ss_pred CCchHHHHHHHH-H-hCeEEEEEEcHHHHHHHHHHHHHcCCC-----ceEEEECCcccCCCC----CCCcCEEEEeeccC
Confidence 577777665554 2 348999999999999999999999984 589999999866543 35899999986211
Q ss_pred --CHHHHHHHHHhcccCCEEEE
Q 019408 82 --DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 --p~~fld~al~~v~~gGlL~v 101 (341)
|.++ ++.|++||.|.+
T Consensus 150 ~vP~~L----l~QL~~gGrlv~ 167 (209)
T COG2518 150 EVPEAL----LDQLKPGGRLVI 167 (209)
T ss_pred CCCHHH----HHhcccCCEEEE
Confidence 3344 456999999996
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0024 Score=66.09 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=51.2
Q ss_pred CccccHhHHHHhhhC-------C-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHh-hhcCCcc
Q 019408 1 MCGCGIRSLRYLAEA-------K-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSEC-YLKREFF 71 (341)
Q Consensus 1 fagsG~rgir~a~e~-------g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~-~~~~~~f 71 (341)
.||||.+.+.++... + ...+++.|+++.+++.++.|+...+. ....+.+.|........ .....+|
T Consensus 39 ~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-----~~~~i~~~d~l~~~~~~~~~~~~~f 113 (524)
T TIGR02987 39 CCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-----LEINVINFNSLSYVLLNIESYLDLF 113 (524)
T ss_pred CCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-----CCceeeecccccccccccccccCcc
Confidence 389999999887642 1 14689999999999999999987652 12345555543221100 1112479
Q ss_pred cEEEeCC-CCC
Q 019408 72 DLIDIDS-FGS 81 (341)
Q Consensus 72 DvIdlDP-ygs 81 (341)
|+|+-.| |+.
T Consensus 114 D~IIgNPPy~~ 124 (524)
T TIGR02987 114 DIVITNPPYGR 124 (524)
T ss_pred cEEEeCCCccc
Confidence 9999999 874
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0034 Score=57.08 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=51.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI-DS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl-DP 78 (341)
||+|..+..++. .++ +|+++|+|+++++.+++++..++.. +++++.+.|+.... ..||+|+. +.
T Consensus 64 cG~G~~~~~la~-~~~-~v~gvD~s~~~i~~a~~~~~~~~~~----~~i~~~~~d~~~~~-------~~fD~ii~~~~ 128 (219)
T TIGR02021 64 CGTGLLSIELAK-RGA-IVKAVDISEQMVQMARNRAQGRDVA----GNVEFEVNDLLSLC-------GEFDIVVCMDV 128 (219)
T ss_pred CCCCHHHHHHHH-CCC-EEEEEECCHHHHHHHHHHHHhcCCC----CceEEEECChhhCC-------CCcCEEEEhhH
Confidence 799999998887 454 7999999999999999999877652 35778889986532 47998864 44
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.004 Score=56.80 Aligned_cols=84 Identities=13% Similarity=-0.025 Sum_probs=57.4
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHH--HHHh--hhcCCcccEEEe
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV--LSEC--YLKREFFDLIDI 76 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~--l~~~--~~~~~~fDvIdl 76 (341)
||||..+..++...+. ..|+++|+++. ++.. .++++++|+.+. +.+. ......||+|..
T Consensus 60 ~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~-----~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 60 AAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIV-----GVDFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred ccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCC-----CcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 7999999888875443 58999999981 2231 367889998764 2211 112457999998
Q ss_pred CC---C-CCCH-----------HHHHHHHHhcccCCEEEE
Q 019408 77 DS---F-GSDS-----------SFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 77 DP---y-gsp~-----------~fld~al~~v~~gGlL~v 101 (341)
|+ + |.+. ..++.+.+.|++||.+.+
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 75 2 3321 245677789999999998
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0022 Score=62.19 Aligned_cols=139 Identities=21% Similarity=0.153 Sum_probs=91.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||+++.-++. +||++|++++.|.-| +.+++=++.|++. +++.|+.+-..+. .-+++.|+|+-.|.|.
T Consensus 186 aGSGILS~FAaq-AGA~~vYAvEAS~MA-qyA~~Lv~~N~~~----~rItVI~GKiEdi-----eLPEk~DviISEPMG~ 254 (517)
T KOG1500|consen 186 AGSGILSFFAAQ-AGAKKVYAVEASEMA-QYARKLVASNNLA----DRITVIPGKIEDI-----ELPEKVDVIISEPMGY 254 (517)
T ss_pred CCccHHHHHHHH-hCcceEEEEehhHHH-HHHHHHHhcCCcc----ceEEEccCccccc-----cCchhccEEEeccchh
Confidence 799999999998 799999999998543 4555555666664 6888998877654 1257899999999876
Q ss_pred C---HHHHH---HHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEE
Q 019408 82 D---SSFLR---TVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVS 155 (341)
Q Consensus 82 p---~~fld---~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~ 155 (341)
- ...++ -|-+-+++.|-+.=|-.|. .-.|-+....|- |+.- -...+.+-+=||.-+.
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfPT~gdi----HlAPFsDE~Ly~----------E~~n---kAnFWyQq~fyGVdLt 317 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFPTVGDI----HLAPFSDEQLYV----------EQFN---KANFWYQQNFYGVDLT 317 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccCcccce----eecccchHHHHH----------HHHh---hhhhhhhhccccccch
Confidence 2 12333 2337799999988665443 111222222221 1111 1234555666788888
Q ss_pred EEEecccCCCCeEEE
Q 019408 156 PLFSYYSYHGPVFRV 170 (341)
Q Consensus 156 Pl~s~~~~~dhy~Rv 170 (341)
||.--. ++-|+|-
T Consensus 318 ~L~g~a--~~eYFrQ 330 (517)
T KOG1500|consen 318 PLYGSA--HQEYFRQ 330 (517)
T ss_pred hhhhhh--hhhhhcc
Confidence 887777 6767663
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.005 Score=54.78 Aligned_cols=84 Identities=15% Similarity=0.033 Sum_probs=56.1
Q ss_pred ccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHH-----HHHhhhcCCcccEEE
Q 019408 2 CGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV-----LSECYLKREFFDLID 75 (341)
Q Consensus 2 agsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~-----l~~~~~~~~~fDvId 75 (341)
||||..+..++... +..+|+++|+|+.. .. ..+++++.|+.+. +.+. ....+||+|+
T Consensus 41 ~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-----~~i~~~~~d~~~~~~~~~l~~~-~~~~~~D~V~ 103 (188)
T TIGR00438 41 AAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-----ENVDFIRGDFTDEEVLNKIRER-VGDDKVDVVM 103 (188)
T ss_pred CCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-----CCceEEEeeCCChhHHHHHHHH-hCCCCccEEE
Confidence 69999988887752 45689999999853 11 1245566676432 1111 1245799999
Q ss_pred eCC----CCCC-----------HHHHHHHHHhcccCCEEEEE
Q 019408 76 IDS----FGSD-----------SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 76 lDP----ygsp-----------~~fld~al~~v~~gGlL~vt 102 (341)
.|+ +|.+ ..++..+.+.|++||.+++.
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 984 2321 24567788999999999985
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0057 Score=58.86 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=60.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|+|..+...+. .+ .+|+++|+|+.+++.+++|+..++.. .+++++++|+.+.- -..||+|+.+| |.
T Consensus 45 ~G~G~LT~~Ll~-~~-~~V~avEiD~~li~~l~~~~~~~~~~----~~v~ii~~Dal~~~------~~~~d~VvaNlPY~ 112 (294)
T PTZ00338 45 PGTGNLTEKLLQ-LA-KKVIAIEIDPRMVAELKKRFQNSPLA----SKLEVIEGDALKTE------FPYFDVCVANVPYQ 112 (294)
T ss_pred CchHHHHHHHHH-hC-CcEEEEECCHHHHHHHHHHHHhcCCC----CcEEEEECCHhhhc------ccccCEEEecCCcc
Confidence 689999988876 33 57999999999999999999876642 47899999998642 13689999997 76
Q ss_pred CCHHHHHHHH
Q 019408 81 SDSSFLRTVF 90 (341)
Q Consensus 81 sp~~fld~al 90 (341)
-.+|.+-..+
T Consensus 113 Istpil~~ll 122 (294)
T PTZ00338 113 ISSPLVFKLL 122 (294)
T ss_pred cCcHHHHHHH
Confidence 5556655544
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.00013 Score=57.68 Aligned_cols=91 Identities=20% Similarity=0.240 Sum_probs=52.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC-C--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID-S-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD-P-- 78 (341)
||+|......+.+....+++++|+|+.+++.+++.+...... .....+.+..+.... ..++.||+|+.= -
T Consensus 5 cG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 5 CGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-----NFERLRFDVLDLFDY--DPPESFDLVVASNVLH 77 (99)
T ss_dssp TTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---C--CC----SEEEEE-TTS
T ss_pred ccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-----ceeEEEeecCChhhc--ccccccceehhhhhHh
Confidence 689999988887644567999999999999888888876532 222233332222221 112489988543 2
Q ss_pred -CCCCHHHHHHHHHhcccCCEE
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLL 99 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL 99 (341)
...+..++..+.+.|++||.|
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 122456777888899999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0071 Score=58.04 Aligned_cols=92 Identities=13% Similarity=0.015 Sum_probs=68.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
+|+|..++++++...--+++.+|. +.+++.+++|++..++. ++++++.+|+++.- . ..+|+|++-=
T Consensus 158 ~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~----~rv~~~~~d~~~~~--~----~~~D~v~~~~~lh 226 (306)
T TIGR02716 158 GGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA----DRMRGIAVDIYKES--Y----PEADAVLFCRILY 226 (306)
T ss_pred CchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc----ceEEEEecCccCCC--C----CCCCEEEeEhhhh
Confidence 699999999998632347999997 78999999999988874 57889999987521 1 2369876432
Q ss_pred -CCC--CHHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGS--DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygs--p~~fld~al~~v~~gGlL~vt~T 104 (341)
+.. ....+..+.+.|++||.|.+...
T Consensus 227 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 227 SANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 111 12467788899999999998653
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.11 Score=49.92 Aligned_cols=91 Identities=14% Similarity=0.008 Sum_probs=60.7
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||||...+.++.--| ...|+++|+++.+.+-+.+-++.. .++.++..|+..-.. .....+.||+|++|=.
T Consensus 141 aG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-------~NI~~I~~Da~~p~~-y~~~~~~vDvV~~Dva- 211 (293)
T PTZ00146 141 AASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-------PNIVPIIEDARYPQK-YRMLVPMVDVIFADVA- 211 (293)
T ss_pred CcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-------CCCEEEECCccChhh-hhcccCCCCEEEEeCC-
Confidence 799999998887433 358999999998775444433321 134667888864321 1111236999999972
Q ss_pred CCH---HHHHHHHHhcccCCEEEE
Q 019408 81 SDS---SFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 81 sp~---~fld~al~~v~~gGlL~v 101 (341)
.|. .++..|-+.|++||.++|
T Consensus 212 ~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 212 QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred CcchHHHHHHHHHHhccCCCEEEE
Confidence 222 345567779999999998
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.024 Score=54.48 Aligned_cols=113 Identities=15% Similarity=0.005 Sum_probs=74.6
Q ss_pred ccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc-CCcccEEEeCC-
Q 019408 2 CGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK-REFFDLIDIDS- 78 (341)
Q Consensus 2 agsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~-~~~fDvIdlDP- 78 (341)
||||......+... ...+++++|+|++.++..+++++.... ..++..+++|..+.+...... .....+++++-
T Consensus 72 cGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p----~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~ 147 (301)
T TIGR03438 72 SGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP----QLEVHGICADFTQPLALPPEPAAGRRLGFFPGST 147 (301)
T ss_pred CCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC----CceEEEEEEcccchhhhhcccccCCeEEEEeccc
Confidence 69999998888741 135799999999999999999875321 125677899988755332110 11234666664
Q ss_pred CCC-----CHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhcc
Q 019408 79 FGS-----DSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGA 123 (341)
Q Consensus 79 ygs-----p~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~ 123 (341)
++. ...|+...-+.|++||.+.+ ..|. + +.+..-.+.|..
T Consensus 148 ~~~~~~~e~~~~L~~i~~~L~pgG~~li-g~d~---~-~~~~~~~~aY~d 192 (301)
T TIGR03438 148 IGNFTPEEAVAFLRRIRQLLGPGGGLLI-GVDL---V-KDPAVLEAAYND 192 (301)
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCEEEE-eccC---C-CCHHHHHHhhcC
Confidence 442 23467777889999999998 4444 3 344555665643
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.012 Score=56.18 Aligned_cols=89 Identities=19% Similarity=0.223 Sum_probs=71.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE-EeCC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI-DIDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI-dlDP-- 78 (341)
||-|.++|++|.+-|+ +|+.+++|++..+.+++=++.-|++ .++++.-.|-.++ .++||-| =+.=
T Consensus 81 CGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~----~~v~v~l~d~rd~-------~e~fDrIvSvgmfE 148 (283)
T COG2230 81 CGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLE----DNVEVRLQDYRDF-------EEPFDRIVSVGMFE 148 (283)
T ss_pred CChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCC----cccEEEecccccc-------ccccceeeehhhHH
Confidence 6889999999997655 6999999999999999999988884 5788888887765 2459955 4444
Q ss_pred -CCC--CHHHHHHHHHhcccCCEEEEE
Q 019408 79 -FGS--DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 -ygs--p~~fld~al~~v~~gGlL~vt 102 (341)
+|. -..|+..+-+.|++||.+.+.
T Consensus 149 hvg~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 149 HVGKENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred HhCcccHHHHHHHHHhhcCCCceEEEE
Confidence 453 237888999999999999863
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0086 Score=53.61 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=55.9
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||||+.+=-.++-.| -....+.|+||.|.+..++.++.|++ ++.+++.|.+.-|+. ++.||+...| |
T Consensus 52 ~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~------~~~~V~tdl~~~l~~-----~~VDvLvfNPPY 120 (209)
T KOG3191|consen 52 CGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV------HIDVVRTDLLSGLRN-----ESVDVLVFNPPY 120 (209)
T ss_pred CCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC------ccceeehhHHhhhcc-----CCccEEEECCCc
Confidence 799998877766533 35568999999999999999999986 467899999988764 6899999988 6
Q ss_pred C
Q 019408 80 G 80 (341)
Q Consensus 80 g 80 (341)
-
T Consensus 121 V 121 (209)
T KOG3191|consen 121 V 121 (209)
T ss_pred C
Confidence 4
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0017 Score=52.19 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=45.1
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---CCCCHHHHHHHHHhcc
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS---FGSDSSFLRTVFNAVK 94 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP---ygsp~~fld~al~~v~ 94 (341)
.+++++|..+. .+..+++++..++. .+++++++|..+.+.+.. ..+||+|++|= |......+..+++.++
T Consensus 24 ~~~~~vD~~~~-~~~~~~~~~~~~~~----~~~~~~~g~s~~~l~~~~--~~~~dli~iDg~H~~~~~~~dl~~~~~~l~ 96 (106)
T PF13578_consen 24 GKLYSVDPFPG-DEQAQEIIKKAGLS----DRVEFIQGDSPDFLPSLP--DGPIDLIFIDGDHSYEAVLRDLENALPRLA 96 (106)
T ss_dssp ---EEEESS-------------GGG-----BTEEEEES-THHHHHHHH--H--EEEEEEES---HHHHHHHHHHHGGGEE
T ss_pred CCEEEEECCCc-ccccchhhhhcCCC----CeEEEEEcCcHHHHHHcC--CCCEEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 47999999995 33344444434442 468999999999988764 46899999996 3222345667888999
Q ss_pred cCCEEEE
Q 019408 95 RDGLLYL 101 (341)
Q Consensus 95 ~gGlL~v 101 (341)
+||++++
T Consensus 97 ~ggviv~ 103 (106)
T PF13578_consen 97 PGGVIVF 103 (106)
T ss_dssp EEEEEEE
T ss_pred CCeEEEE
Confidence 9999986
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0009 Score=63.91 Aligned_cols=93 Identities=23% Similarity=0.198 Sum_probs=66.0
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+||-|.+-+-++...||+.|++.|.||.+++.+++|++.|++. +...++.+|.+..- .....|-|.|-=--
T Consensus 202 YAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~----~r~~i~~gd~R~~~-----~~~~AdrVnLGLlP 272 (351)
T KOG1227|consen 202 YAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM----DRCRITEGDNRNPK-----PRLRADRVNLGLLP 272 (351)
T ss_pred hcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH----HHHHhhhccccccC-----ccccchheeecccc
Confidence 5899999995555589999999999999999999999999874 45566777765431 22356877776421
Q ss_pred CCHHHHHHHHHhcc-cCC-EEEEE
Q 019408 81 SDSSFLRTVFNAVK-RDG-LLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~-~gG-lL~vt 102 (341)
|...--..|+++|+ +|| +|.|.
T Consensus 273 Sse~~W~~A~k~Lk~eggsilHIH 296 (351)
T KOG1227|consen 273 SSEQGWPTAIKALKPEGGSILHIH 296 (351)
T ss_pred ccccchHHHHHHhhhcCCcEEEEe
Confidence 22222336788887 445 78864
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0063 Score=57.74 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=71.7
Q ss_pred HhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC---C
Q 019408 6 IRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS---D 82 (341)
Q Consensus 6 ~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs---p 82 (341)
+.||-.++-.-+++|..+||++..++.|.+-++..++ ++++++.-|...-|.+..+ ++||++.-||--+ -
T Consensus 164 Ltsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-----~~ie~~~~Dlr~plpe~~~--~kFDvfiTDPpeTi~al 236 (354)
T COG1568 164 LTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-----NNIEAFVFDLRNPLPEDLK--RKFDVFITDPPETIKAL 236 (354)
T ss_pred hhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-----cchhheeehhcccChHHHH--hhCCeeecCchhhHHHH
Confidence 4678888743378999999999999999999998888 3577788888887765433 5899999999211 1
Q ss_pred HHHHHHHHHhcccC---CEEEEEecCC
Q 019408 83 SSFLRTVFNAVKRD---GLLYLTSTDG 106 (341)
Q Consensus 83 ~~fld~al~~v~~g---GlL~vt~TD~ 106 (341)
.-|+.+.+..|+.- |+..+|-.+.
T Consensus 237 k~FlgRGI~tLkg~~~aGyfgiT~res 263 (354)
T COG1568 237 KLFLGRGIATLKGEGCAGYFGITRRES 263 (354)
T ss_pred HHHHhccHHHhcCCCccceEeeeeccc
Confidence 25666677777766 8999877644
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.008 Score=55.12 Aligned_cols=96 Identities=8% Similarity=0.034 Sum_probs=59.9
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCC-----C-----CCccEEEEeccHHHHHHHhhhcCCc
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGS-----G-----DEKRWVVTHFDANRVLSECYLKREF 70 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~-----~-----~~~~~~v~~~DA~~~l~~~~~~~~~ 70 (341)
.||+|--++-.|. +|. .|+++|+|+.|++.+.+. +++.. + ...++++.++|.+++-... ...
T Consensus 42 GCG~G~da~~LA~-~G~-~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~---~~~ 113 (213)
T TIGR03840 42 LCGKSLDLAWLAE-QGH-RVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD---LGP 113 (213)
T ss_pred CCCchhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCccc---CCC
Confidence 4799988887776 676 499999999999975331 22100 0 0135778899988753211 236
Q ss_pred ccEEEeCC-CCC--C---HHHHHHHHHhcccCCE-EEEEec
Q 019408 71 FDLIDIDS-FGS--D---SSFLRTVFNAVKRDGL-LYLTST 104 (341)
Q Consensus 71 fDvIdlDP-ygs--p---~~fld~al~~v~~gGl-L~vt~T 104 (341)
||.|+--- |.. | ..++....++|++||. +.+|-+
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 88663211 110 1 2467788899999996 445443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.014 Score=53.09 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=45.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
||+|......+...+..+++++|+|+++++.+++|+. .+.+.++|+... .....||+|+..=
T Consensus 52 CG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----------~~~~~~~d~~~~-----~~~~sfD~V~~~~ 113 (204)
T TIGR03587 52 ANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----------NINIIQGSLFDP-----FKDNFFDLVLTKG 113 (204)
T ss_pred cCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----------CCcEEEeeccCC-----CCCCCEEEEEECC
Confidence 7999999888764344679999999999999998753 234567787651 1245799998654
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.013 Score=59.67 Aligned_cols=92 Identities=16% Similarity=0.062 Sum_probs=64.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..+...+. . ..+|+++|+|+.+++..++ .++.. .++++++.|+...- .......||+|+...
T Consensus 46 cG~G~~~~~la~-~-~~~v~giD~s~~~l~~a~~---~~~~~----~~i~~~~~d~~~~~--~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 46 AGIGRFTGELAK-K-AGQVIALDFIESVIKKNES---INGHY----KNVKFMCADVTSPD--LNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCcCHHHHHHHh-h-CCEEEEEeCCHHHHHHHHH---HhccC----CceEEEEecccccc--cCCCCCCEEEEehhhhHH
Confidence 799999988876 3 4689999999999875433 33321 35678889986421 112245799999987
Q ss_pred CCCC---HHHHHHHHHhcccCCEEEEEec
Q 019408 79 FGSD---SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 ygsp---~~fld~al~~v~~gGlL~vt~T 104 (341)
+-+. ..++....+.|++||+|.+..+
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 2221 3567777889999999998543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.036 Score=53.91 Aligned_cols=68 Identities=19% Similarity=0.122 Sum_probs=48.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEE-eCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLID-IDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvId-lDP 78 (341)
||+|..++.++. .|. +|+++|+|+.+++..++|++.......+...+++...|...+ ...||+|+ .|.
T Consensus 153 cGtG~~a~~la~-~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-------~~~fD~Vv~~~v 221 (315)
T PLN02585 153 CGTGSLAIPLAL-EGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-------SGKYDTVTCLDV 221 (315)
T ss_pred CCCCHHHHHHHH-CCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-------CCCcCEEEEcCE
Confidence 799999999997 464 799999999999999999986421100012456677886432 24799886 344
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0089 Score=55.00 Aligned_cols=94 Identities=10% Similarity=0.041 Sum_probs=60.0
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCC-----C-----CCccEEEEeccHHHHHHHhhhcCCc
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGS-----G-----DEKRWVVTHFDANRVLSECYLKREF 70 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~-----~-----~~~~~~v~~~DA~~~l~~~~~~~~~ 70 (341)
.||+|--++-.|. .|. .|+++|+|+.|++.+.+ .+++.. + ...++++.++|++.+-... ...
T Consensus 45 gCG~G~da~~LA~-~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~---~~~ 116 (218)
T PRK13255 45 LCGKSLDMLWLAE-QGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD---LAD 116 (218)
T ss_pred CCCChHhHHHHHh-CCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCccc---CCC
Confidence 4789977777765 676 49999999999997532 222210 0 0135778899998763221 136
Q ss_pred ccEEE-------eCCCCCCHHHHHHHHHhcccCCE-EEEEe
Q 019408 71 FDLID-------IDSFGSDSSFLRTVFNAVKRDGL-LYLTS 103 (341)
Q Consensus 71 fDvId-------lDPygsp~~fld~al~~v~~gGl-L~vt~ 103 (341)
||.|+ +.|=. -..++....++|++||. +.+|.
T Consensus 117 fd~v~D~~~~~~l~~~~-R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 117 VDAVYDRAALIALPEEM-RERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred eeEEEehHhHhhCCHHH-HHHHHHHHHHHcCCCCeEEEEEE
Confidence 88776 33300 02667788899999995 44444
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0036 Score=57.97 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=66.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE---EeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI---DIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI---dlDP 78 (341)
||||+.|.+.=. -+++.+.+|||..-++...+ -++ --...+.|+..++... .+++||+| |+=|
T Consensus 134 CGTGL~G~~lR~--~a~~ltGvDiS~nMl~kA~e----Kg~------YD~L~~Aea~~Fl~~~--~~er~DLi~AaDVl~ 199 (287)
T COG4976 134 CGTGLTGEALRD--MADRLTGVDISENMLAKAHE----KGL------YDTLYVAEAVLFLEDL--TQERFDLIVAADVLP 199 (287)
T ss_pred cCcCcccHhHHH--HHhhccCCchhHHHHHHHHh----ccc------hHHHHHHHHHHHhhhc--cCCcccchhhhhHHH
Confidence 799999988743 36789999999988776655 222 1135789999888654 46799988 4446
Q ss_pred C-CCCHHHHHHHHHhcccCCEEEEEecCC
Q 019408 79 F-GSDSSFLRTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 79 y-gsp~~fld~al~~v~~gGlL~vt~TD~ 106 (341)
| |.-.+++-.+-.++++||++.++.-+.
T Consensus 200 YlG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 200 YLGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred hhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 5 655567777888999999999854433
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.03 Score=50.85 Aligned_cols=62 Identities=18% Similarity=0.066 Sum_probs=48.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI 76 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl 76 (341)
||+|..+..++. .+. +|+++|+|+.+++.+++++...+.. +++.+..+|... . ...||+|+.
T Consensus 72 cG~G~~~~~l~~-~~~-~v~~~D~s~~~i~~a~~~~~~~~~~----~~i~~~~~d~~~----~---~~~fD~v~~ 133 (230)
T PRK07580 72 CGVGSLSIPLAR-RGA-KVVASDISPQMVEEARERAPEAGLA----GNITFEVGDLES----L---LGRFDTVVC 133 (230)
T ss_pred CCCCHHHHHHHH-cCC-EEEEEECCHHHHHHHHHHHHhcCCc----cCcEEEEcCchh----c---cCCcCEEEE
Confidence 799999998887 465 4999999999999999999877652 356777888321 1 247998865
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.026 Score=56.39 Aligned_cols=81 Identities=25% Similarity=0.407 Sum_probs=61.4
Q ss_pred CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC--CC-----C------
Q 019408 16 KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF--GS-----D------ 82 (341)
Q Consensus 16 ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy--gs-----p------ 82 (341)
+-..|+|||.|..-++.++.|+...|+. ...+.+.|...+-... . +..||-|.||-- |+ +
T Consensus 265 n~G~I~AnD~n~~r~~~l~~n~~rlGv~-----ntiv~n~D~~ef~~~~-~-~~~fDRVLLDAPCSGtgvi~K~~~vkt~ 337 (460)
T KOG1122|consen 265 NTGVIFANDSNENRLKSLKANLHRLGVT-----NTIVSNYDGREFPEKE-F-PGSFDRVLLDAPCSGTGVISKDQSVKTN 337 (460)
T ss_pred CCceEEecccchHHHHHHHHHHHHhCCC-----ceEEEccCcccccccc-c-CcccceeeecCCCCCCcccccccccccc
Confidence 3456999999999999999999999984 5678899987553222 1 227999999962 21 0
Q ss_pred -------------HHHHHHHHHhcccCCEEEEEec
Q 019408 83 -------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 83 -------------~~fld~al~~v~~gGlL~vt~T 104 (341)
...+++|+++|+.||+|.- +|
T Consensus 338 k~~~di~~~~~LQr~LllsAi~lv~~GGvLVY-ST 371 (460)
T KOG1122|consen 338 KTVKDILRYAHLQRELLLSAIDLVKAGGVLVY-ST 371 (460)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhhccCCcEEEE-Ee
Confidence 0245699999999999985 66
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.033 Score=52.74 Aligned_cols=77 Identities=13% Similarity=0.048 Sum_probs=57.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|+|..+...+. .+. +|+++|+|+.+++.+++|+.. .+++++++|+.++-.. ...+|.|+-.| |.
T Consensus 51 ~G~G~lt~~L~~-~~~-~v~avE~d~~~~~~~~~~~~~--------~~v~~i~~D~~~~~~~----~~~~~~vv~NlPY~ 116 (272)
T PRK00274 51 PGLGALTEPLLE-RAA-KVTAVEIDRDLAPILAETFAE--------DNLTIIEGDALKVDLS----ELQPLKVVANLPYN 116 (272)
T ss_pred CCccHHHHHHHH-hCC-cEEEEECCHHHHHHHHHhhcc--------CceEEEEChhhcCCHH----HcCcceEEEeCCcc
Confidence 699999999987 455 899999999999999998742 2578899999875211 11158888887 77
Q ss_pred CCHHHHHHHHHh
Q 019408 81 SDSSFLRTVFNA 92 (341)
Q Consensus 81 sp~~fld~al~~ 92 (341)
-.++.+..-+..
T Consensus 117 iss~ii~~~l~~ 128 (272)
T PRK00274 117 ITTPLLFHLLEE 128 (272)
T ss_pred chHHHHHHHHhc
Confidence 667777665543
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.023 Score=53.43 Aligned_cols=74 Identities=12% Similarity=0.002 Sum_probs=57.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|+|..++..+.. + .+|+++|+|+..++.+++|++. . .+++++++|+.++-. ..||.|+-.| |.
T Consensus 38 ~G~G~lt~~L~~~-~-~~v~~vEid~~~~~~l~~~~~~--~-----~~v~ii~~D~~~~~~------~~~d~Vv~NlPy~ 102 (258)
T PRK14896 38 PGKGALTDELAKR-A-KKVYAIELDPRLAEFLRDDEIA--A-----GNVEIIEGDALKVDL------PEFNKVVSNLPYQ 102 (258)
T ss_pred CccCHHHHHHHHh-C-CEEEEEECCHHHHHHHHHHhcc--C-----CCEEEEEeccccCCc------hhceEEEEcCCcc
Confidence 7999999999884 4 5899999999999999999864 2 367899999976421 2479999886 76
Q ss_pred CCHHHHHHHH
Q 019408 81 SDSSFLRTVF 90 (341)
Q Consensus 81 sp~~fld~al 90 (341)
..++.+...+
T Consensus 103 i~s~~~~~l~ 112 (258)
T PRK14896 103 ISSPITFKLL 112 (258)
T ss_pred cCcHHHHHHH
Confidence 5556655444
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.011 Score=56.16 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=47.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
|||.|..++-+.. .|.+.|+++|+++.|+++.++|.... ++++|..++..... ...+|+|..+|
T Consensus 7 FsG~Gg~~~gl~~-~G~~~v~a~e~~~~a~~~~~~N~~~~-----------~~~~Di~~~~~~~~--~~~~D~l~~gp 70 (275)
T cd00315 7 FAGIGGFRLGLEK-AGFEIVAANEIDKSAAETYEANFPNK-----------LIEGDITKIDEKDF--IPDIDLLTGGF 70 (275)
T ss_pred ccCcchHHHHHHH-cCCEEEEEEeCCHHHHHHHHHhCCCC-----------CccCccccCchhhc--CCCCCEEEeCC
Confidence 8999998666554 68999999999999999999997521 34555555432210 23699999999
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.02 Score=54.15 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=61.4
Q ss_pred ccccH----hHHHHhhhCC-----CCEEEEeeCCHHHHHHHHHHHH----HcCCC---------CCC---------CccE
Q 019408 2 CGCGI----RSLRYLAEAK-----ADFVMANDGNDAHRRVILGNLK----SIERG---------SGD---------EKRW 50 (341)
Q Consensus 2 agsG~----rgir~a~e~g-----a~~V~~~Dis~~A~~~i~~N~~----~n~~~---------~~~---------~~~~ 50 (341)
||||- .++..+.... ..+|++.|+|+.+++.+++++- ..++. ..+ ...+
T Consensus 108 CgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V 187 (264)
T smart00138 108 CSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERV 187 (264)
T ss_pred ccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcC
Confidence 67884 4555543211 2479999999999999998751 11110 000 0134
Q ss_pred EEEeccHHHHHHHhhhcCCcccEEEeCC---CCC-C--HHHHHHHHHhcccCCEEEEEecCCC
Q 019408 51 VVTHFDANRVLSECYLKREFFDLIDIDS---FGS-D--SSFLRTVFNAVKRDGLLYLTSTDGY 107 (341)
Q Consensus 51 ~v~~~DA~~~l~~~~~~~~~fDvIdlDP---ygs-p--~~fld~al~~v~~gGlL~vt~TD~~ 107 (341)
++.+.|+.+.- .....||+|+.== |-. + ...+....+.|++||+|++-.+++-
T Consensus 188 ~F~~~dl~~~~----~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 188 RFAKHNLLAES----PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred EEeeccCCCCC----CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcccC
Confidence 55566665421 1235799998721 111 2 1356677789999999999777654
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.018 Score=54.33 Aligned_cols=84 Identities=12% Similarity=0.108 Sum_probs=59.0
Q ss_pred ccccHhHHHHhhhC---CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEA---KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~---ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
||+|......+... +...|+.+|+|+.+++.++++.. .+.+..+|+.++- .....||+|.. .
T Consensus 94 cG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~----------~~~~~~~d~~~lp----~~~~sfD~I~~-~ 158 (272)
T PRK11088 94 CGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP----------QVTFCVASSHRLP----FADQSLDAIIR-I 158 (272)
T ss_pred CcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC----------CCeEEEeecccCC----CcCCceeEEEE-e
Confidence 68999888876531 12369999999999999887531 2456677876531 22457999864 2
Q ss_pred CCCCHHHHHHHHHhcccCCEEEEE
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~vt 102 (341)
|. | .++....+.|++||.|++.
T Consensus 159 ~~-~-~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 159 YA-P-CKAEELARVVKPGGIVITV 180 (272)
T ss_pred cC-C-CCHHHHHhhccCCCEEEEE
Confidence 33 3 4466778899999999973
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.027 Score=53.67 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=40.5
Q ss_pred cEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCCC-------------------HHHHHHHHHhcccCCEEEEE
Q 019408 49 RWVVTHFDANRVLSECYLKREFFDLIDIDS-FGSD-------------------SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 49 ~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygsp-------------------~~fld~al~~v~~gGlL~vt 102 (341)
..+++++|+.++|..+ ..+.||+|++|| |+.. ..++..+.+.|++||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l--~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKI--PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhc--ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3468999999999765 346899999998 7531 13556778899999999984
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.029 Score=50.38 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=67.8
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE------
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI------ 74 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI------ 74 (341)
+|-|.+=.+.++| |- ...+.+|-|+.|+++++.=++.++++ +.+++.+.|...- .. ...+||+|
T Consensus 76 tGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~----n~I~f~q~DI~~~-~~---~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 76 TGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFS----NEIRFQQLDITDP-DF---LSGQFDLVLDKGTL 146 (227)
T ss_pred CCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCC----cceeEEEeeccCC-cc---cccceeEEeecCce
Confidence 3566676777886 54 44899999999999977777788885 5577778887653 11 12356655
Q ss_pred ---EeCC---CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 75 ---DIDS---FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 75 ---dlDP---ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
=|-| -+.+.-|++..=++|++||++.||+
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS 181 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence 3444 4556678898889999999999988
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.15 Score=47.30 Aligned_cols=101 Identities=18% Similarity=0.093 Sum_probs=77.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE---EeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI---DIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI---dlDP 78 (341)
+|.|-.=+..|.+.--.-.+.+|+....+..+.+=++..++. ++.+++.||..+|..+... ...|=| +-||
T Consensus 57 fG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-----Nlri~~~DA~~~l~~~~~~-~sl~~I~i~FPDP 130 (227)
T COG0220 57 FGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-----NLRLLCGDAVEVLDYLIPD-GSLDKIYINFPDP 130 (227)
T ss_pred CCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-----cEEEEcCCHHHHHHhcCCC-CCeeEEEEECCCC
Confidence 588888899998622234789999999888888888877772 6889999999999876432 245544 6699
Q ss_pred -CCC--------CHHHHHHHHHhcccCCEEEEEecCCCCC
Q 019408 79 -FGS--------DSSFLRTVFNAVKRDGLLYLTSTDGYSS 109 (341)
Q Consensus 79 -ygs--------p~~fld~al~~v~~gGlL~vt~TD~~~l 109 (341)
+.. -.+|++...+.|++||.|.+ +||-..+
T Consensus 131 WpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~-aTD~~~y 169 (227)
T COG0220 131 WPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF-ATDNEEY 169 (227)
T ss_pred CCCccccccccCCHHHHHHHHHHccCCCEEEE-EecCHHH
Confidence 322 23899999999999999997 9987543
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.034 Score=47.00 Aligned_cols=82 Identities=21% Similarity=0.226 Sum_probs=55.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|......+. .|. +|+.+|+|+.+++. .+ . .. ...+..... .....||+|..-=
T Consensus 31 cG~G~~~~~l~~-~~~-~~~g~D~~~~~~~~------~~-~------~~--~~~~~~~~~----~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 31 CGTGSFLRALAK-RGF-EVTGVDISPQMIEK------RN-V------VF--DNFDAQDPP----FPDGSFDLIICNDVLE 89 (161)
T ss_dssp STTSHHHHHHHH-TTS-EEEEEESSHHHHHH------TT-S------EE--EEEECHTHH----CHSSSEEEEEEESSGG
T ss_pred CCCCHHHHHHHH-hCC-EEEEEECCHHHHhh------hh-h------hh--hhhhhhhhh----ccccchhhHhhHHHHh
Confidence 688988777765 577 89999999999998 11 1 11 122222111 2346899986643
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
...+..+++...+.|++||++.++..
T Consensus 90 ~~~d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 90 HLPDPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp GSSHHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred hcccHHHHHHHHHHhcCCCCEEEEEEc
Confidence 12245778888899999999998654
|
... |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.037 Score=53.34 Aligned_cols=129 Identities=12% Similarity=-0.012 Sum_probs=64.2
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc-CCCCCCCccEEEEec-cHHHHHHHhhhcCCcccEEEeCC--C
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI-ERGSGDEKRWVVTHF-DANRVLSECYLKREFFDLIDIDS--F 79 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n-~~~~~~~~~~~v~~~-DA~~~l~~~~~~~~~fDvIdlDP--y 79 (341)
|.+..|-.+++.|. +.++.||++.+++.+++|++.| +++ +++++... +...++.......+.||+....| |
T Consensus 114 scIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~----~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 114 SCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLE----SRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFY 188 (299)
T ss_dssp TTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-T----TTEEEEE--ST-SSTTTSTT--S-EEEEEE-----
T ss_pred HHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccc----cceEEEEcCCccccchhhhcccceeeEEecCCccc
Confidence 34445555555554 5889999999999999999999 885 67776643 33333333334457899999999 4
Q ss_pred CCCHHHHHHHHHh---ccc-CCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcE
Q 019408 80 GSDSSFLRTVFNA---VKR-DGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHV 154 (341)
Q Consensus 80 gsp~~fld~al~~---v~~-gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i 154 (341)
.|..+....+-+. ++. +. +.+....-|+ ....+...|=|---|+..++++...++..+
T Consensus 189 ~s~~e~~~~~~~k~~nl~~~~~----~~~~p~~~~~-------------G~~~El~~~GGEv~FV~rMI~ES~~~~~~v 250 (299)
T PF05971_consen 189 SSQEEAEAGTERKWKNLGRPNK----KRSPPKLNFT-------------GQSNELWCEGGEVAFVKRMIKESLQLKDQV 250 (299)
T ss_dssp SS-------------------------------------------------TTTTHHHHTHHHHHHHHHHHHHHHGGGE
T ss_pred cChhhhcccccccccccccccc----cccCccccCC-------------CCcceEEcCCccHHHHHHHHHHHHHhCCCc
Confidence 4432221111111 110 00 0000001121 122455566777889999999999886654
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.015 Score=54.04 Aligned_cols=74 Identities=19% Similarity=0.182 Sum_probs=44.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc--CCCCCC--CccEEEEeccHHHHHHHhhhcCCcccEEEeC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI--ERGSGD--EKRWVVTHFDANRVLSECYLKREFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n--~~~~~~--~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD 77 (341)
+|-|.=++-++. .|. +|++++.||....+++.=++.- +.+..+ ..+++++++|+.++|. .....||||++|
T Consensus 84 aGLG~Da~vlA~-~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~---~~~~s~DVVY~D 158 (234)
T PF04445_consen 84 AGLGRDAFVLAS-LGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR---QPDNSFDVVYFD 158 (234)
T ss_dssp -TTSHHHHHHHH-HT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC---CHSS--SEEEE-
T ss_pred CcchHHHHHHHc-cCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh---hcCCCCCEEEEC
Confidence 456666777766 576 5999999999999988766642 111000 0368999999999987 235689999999
Q ss_pred C-CC
Q 019408 78 S-FG 80 (341)
Q Consensus 78 P-yg 80 (341)
| |-
T Consensus 159 PMFp 162 (234)
T PF04445_consen 159 PMFP 162 (234)
T ss_dssp -S--
T ss_pred CCCC
Confidence 9 64
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.17 Score=47.47 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=71.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygs 81 (341)
||=..+.+.+. ..++.+++|+.+...+.+++|+... .+++|.+.|.+..|..+.-..++=-+|.||| |-.
T Consensus 67 GSP~ia~~llR--~qDrl~l~ELHp~d~~~L~~~~~~~-------~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~ 137 (245)
T PF04378_consen 67 GSPAIAARLLR--EQDRLVLFELHPQDFEALKKNFRRD-------RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQ 137 (245)
T ss_dssp -HHHHHHHHS---TTSEEEEE--SHHHHHHHTTS--TT-------S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----S
T ss_pred CCHHHHHHhCC--ccceEEEEecCchHHHHHHHHhccC-------CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCC
Confidence 34445555554 5689999999999999999998742 4788999999999988765555667999999 877
Q ss_pred CHHHHH------HH---------------------------HHhcccCCEEEEEecCCCCCCCCCchhHHhhhc--cccC
Q 019408 82 DSSFLR------TV---------------------------FNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYG--AYIL 126 (341)
Q Consensus 82 p~~fld------~a---------------------------l~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg--~~~~ 126 (341)
..+|-. .| ++.....-+|.++-+ =.-+....+-|| -.+.
T Consensus 138 ~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~~~l~~El~------v~~~~~~~gm~GSGm~ii 211 (245)
T PF04378_consen 138 KDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIKKVLRAELR------VRPPDSPRGMNGSGMLII 211 (245)
T ss_dssp TTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SSE-EEEEEE---------SS---S--EEEEEEE
T ss_pred chHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCCCeEEEEEE------ecCCCCcCceecceEEEE
Confidence 766642 11 222222224444321 111222344454 4567
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhc
Q 019408 127 PMPYSNEIGLRMLIGGAVREASAQ 150 (341)
Q Consensus 127 ~~~~~~E~~lR~ll~~i~~~Aa~~ 150 (341)
+-+|.=+..++.++..+.+.-+.-
T Consensus 212 NPPw~l~~~l~~~l~~L~~~L~~~ 235 (245)
T PF04378_consen 212 NPPWTLDEELEEILPWLAETLAQD 235 (245)
T ss_dssp S--TTHHHHHHHHHHHHHHHSSTT
T ss_pred cCCccHHHHHHHHHHHHHHHhCcC
Confidence 889998889999988888765443
|
; PDB: 2OO3_A. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.13 Score=42.17 Aligned_cols=90 Identities=16% Similarity=0.198 Sum_probs=64.9
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...+.+|+-.| .+|++.|.|+.-.+.+++ .+.. .-+.....|..+.+.+... +..+|+| +|.-|++
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~----~~~~~~~~~~~~~i~~~~~-~~~~d~v-id~~g~~ 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGAD----HVIDYSDDDFVEQIRELTG-GRGVDVV-IDCVGSG 69 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTES----EEEETTTSSHHHHHHHHTT-TSSEEEE-EESSSSH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccc----ccccccccccccccccccc-cccceEE-EEecCcH
Confidence 57999999999878 889999999999999876 4442 1122224456666666532 3568865 4555543
Q ss_pred HHHHHHHHHhcccCCEEEEEec
Q 019408 83 SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~T 104 (341)
+.++.++++++++|-+.+...
T Consensus 70 -~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 70 -DTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp -HHHHHHHHHEEEEEEEEEESS
T ss_pred -HHHHHHHHHhccCCEEEEEEc
Confidence 788999999999999997543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.058 Score=49.25 Aligned_cols=130 Identities=19% Similarity=0.124 Sum_probs=79.0
Q ss_pred cHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC--C
Q 019408 5 GIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS--D 82 (341)
Q Consensus 5 G~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs--p 82 (341)
|..++..+...-+.+|+++|+++..++.+++|++..++. +++++..+|-+..+.. ++..|.|++==.|. -
T Consensus 9 gyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~----~~i~~rlgdGL~~l~~----~e~~d~ivIAGMGG~lI 80 (205)
T PF04816_consen 9 GYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE----DRIEVRLGDGLEVLKP----GEDVDTIVIAGMGGELI 80 (205)
T ss_dssp THHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T----TTEEEEE-SGGGG--G----GG---EEEEEEE-HHHH
T ss_pred hHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc----ccEEEEECCcccccCC----CCCCCEEEEecCCHHHH
Confidence 677888887433688999999999999999999999985 6899999999887753 23369999887764 1
Q ss_pred HHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEeccc
Q 019408 83 SSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYS 162 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s~~~ 162 (341)
..+|+.....++...-|.+ |.. .+.-.+ .+...++|..|.==.-..
T Consensus 81 ~~ILe~~~~~~~~~~~lIL--------qP~------------------~~~~~L-------R~~L~~~gf~I~~E~lv~- 126 (205)
T PF04816_consen 81 IEILEAGPEKLSSAKRLIL--------QPN------------------THAYEL-------RRWLYENGFEIIDEDLVE- 126 (205)
T ss_dssp HHHHHHTGGGGTT--EEEE--------EES------------------S-HHHH-------HHHHHHTTEEEEEEEEEE-
T ss_pred HHHHHhhHHHhccCCeEEE--------eCC------------------CChHHH-------HHHHHHCCCEEEEeEEEe-
Confidence 2445555444444334554 221 122333 355566777765433333
Q ss_pred CCCCeEEEEEEEEe
Q 019408 163 YHGPVFRVMLRVHR 176 (341)
Q Consensus 163 ~~dhy~Rv~vrv~~ 176 (341)
..++|+-|.+-...
T Consensus 127 e~~~~YeIi~~~~~ 140 (205)
T PF04816_consen 127 ENGRFYEIIVAERG 140 (205)
T ss_dssp ETTEEEEEEEEEES
T ss_pred ECCEEEEEEEEEeC
Confidence 35777766555443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.12 Score=49.81 Aligned_cols=70 Identities=19% Similarity=0.058 Sum_probs=55.5
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+|.|.-+..++...+ ..+|+++|+|++|++..+++++. . ++++++++|..++.......-..+|.|.+|.
T Consensus 28 lG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~-----~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 28 FGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--F-----GRFTLVHGNFSNLKEVLAEGLGKVDGILLDL 98 (296)
T ss_pred cCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--C-----CcEEEEeCCHHHHHHHHHcCCCccCEEEECC
Confidence 589999999987532 46899999999999999998754 2 4788999999998765433112699999998
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.21 Score=44.84 Aligned_cols=92 Identities=14% Similarity=0.096 Sum_probs=74.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||-|.=||-.|--..-.+++.+|.+..=+..+++=++..+++ ++++++..+.+ ......||+|..=-+++
T Consensus 57 SGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-----nv~v~~~R~E~-----~~~~~~fd~v~aRAv~~ 126 (184)
T PF02527_consen 57 SGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-----NVEVINGRAEE-----PEYRESFDVVTARAVAP 126 (184)
T ss_dssp STTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-----SEEEEES-HHH-----TTTTT-EEEEEEESSSS
T ss_pred CCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-----CEEEEEeeecc-----cccCCCccEEEeehhcC
Confidence 577888888887544567999999999999999999988883 68999999987 22356899999988887
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
...+++-+...+++||.+..-.
T Consensus 127 l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp HHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEc
Confidence 7788999999999999888643
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.16 Score=47.97 Aligned_cols=92 Identities=24% Similarity=0.195 Sum_probs=66.9
Q ss_pred ccccHhHHHHhhhCCC------CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEE
Q 019408 2 CGCGIRSLRYLAEAKA------DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLID 75 (341)
Q Consensus 2 agsG~rgir~a~e~ga------~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvId 75 (341)
+|||=.++|++...+. .+|+..||||.-+...++-.+..++. ....+.++.+||.++- -....||...
T Consensus 109 GGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~--~~~~~~w~~~dAE~Lp----Fdd~s~D~yT 182 (296)
T KOG1540|consen 109 GGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK--ASSRVEWVEGDAEDLP----FDDDSFDAYT 182 (296)
T ss_pred CCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC--cCCceEEEeCCcccCC----CCCCcceeEE
Confidence 5899999999876555 78999999999999999988766663 1123778899998753 1234566543
Q ss_pred eCCCC-----CCHHHHHHHHHhcccCCEEE
Q 019408 76 IDSFG-----SDSSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 76 lDPyg-----sp~~fld~al~~v~~gGlL~ 100 (341)
+- || .+..-+..|.+.||+||.+.
T Consensus 183 ia-fGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 183 IA-FGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred Ee-cceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 32 22 23356778899999999776
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.14 Score=49.62 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=58.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
.+.|..++.+|+..|+.+|++.|.+++..+++++ .+.+ ..+.....|..+++. . ...+|+| +|.-|.
T Consensus 179 G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~~~~~~~---~-~g~~D~v-id~~G~ 245 (343)
T PRK09880 179 GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD----KLVNPQNDDLDHYKA---E-KGYFDVS-FEVSGH 245 (343)
T ss_pred CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc----EEecCCcccHHHHhc---c-CCCCCEE-EECCCC
Confidence 3567777888888899899999999998888765 4442 111111223333222 1 2258976 588786
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
+ ..++.+++++++||.+.+.
T Consensus 246 ~-~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 246 P-SSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred H-HHHHHHHHHhhcCCEEEEE
Confidence 4 4678899999999998864
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.084 Score=44.21 Aligned_cols=50 Identities=18% Similarity=0.080 Sum_probs=41.0
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA 57 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA 57 (341)
|+.|..++.++. .+. .+|+++|.++..++.+++|++.|++. ++++++..+
T Consensus 7 a~~G~~~~~~~~-~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-----~v~~~~~al 57 (143)
T TIGR01444 7 ANIGDTSLYFAR-KGAEGRVIAFEPLPDAYEILEENVKLNNLP-----NVVLLNAAV 57 (143)
T ss_pred CCccHHHHHHHH-hCCCCEEEEEecCHHHHHHHHHHHHHcCCC-----cEEEEEeee
Confidence 689999999987 454 38999999999999999999999873 466666544
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.08 Score=44.95 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=51.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
|+.|-.+|-++. +||++|++.+.++.-.+.+++|++.|++- ++.. ...+=+ ..=..||+-.+|-=|.
T Consensus 37 A~iGdSaiYF~l-~GAK~Vva~E~~~kl~k~~een~k~nnI~----DK~v-~~~eW~-------~~Y~~~Di~~iDCeGC 103 (156)
T PHA01634 37 ADCGSSALYFLL-RGASFVVQYEKEEKLRKKWEEVCAYFNIC----DKAV-MKGEWN-------GEYEDVDIFVMDCEGC 103 (156)
T ss_pred CCccchhhHHhh-cCccEEEEeccCHHHHHHHHHHhhhheee----ecee-eccccc-------ccCCCcceEEEEccch
Confidence 567889999999 79999999999999999999999999874 3432 222211 1124689988888663
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.11 Score=45.14 Aligned_cols=78 Identities=13% Similarity=0.022 Sum_probs=54.5
Q ss_pred EEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC----CCCCHHHHHHHHHhcccC
Q 019408 21 MANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS----FGSDSSFLRTVFNAVKRD 96 (341)
Q Consensus 21 ~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP----ygsp~~fld~al~~v~~g 96 (341)
+.+|+|++.++..+++.+..+.. ...+++++++|+.++- ...+.||+|.+-= ...+..++....+.|++|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~--~~~~i~~~~~d~~~lp----~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS--CYKCIEWIEGDAIDLP----FDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc--CCCceEEEEechhhCC----CCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence 36899999999998876532210 0135788999998752 2345799997642 122456677888999999
Q ss_pred CEEEEEec
Q 019408 97 GLLYLTST 104 (341)
Q Consensus 97 GlL~vt~T 104 (341)
|.|++...
T Consensus 75 G~l~i~d~ 82 (160)
T PLN02232 75 SRVSILDF 82 (160)
T ss_pred eEEEEEEC
Confidence 99997543
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.072 Score=44.84 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=37.4
Q ss_pred cEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC-------HHHHHHHHHhcccCCEEEEEec
Q 019408 49 RWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD-------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 49 ~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp-------~~fld~al~~v~~gGlL~vt~T 104 (341)
..++..+||.+.|..+. .+||+|++|+|... .+++....+++++||.|.. .|
T Consensus 32 ~L~L~~gDa~~~l~~l~---~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T-ys 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLD---ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT-YS 90 (124)
T ss_dssp EEEEEES-HHHHHHHB----T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE-S-
T ss_pred EEEEEEcHHHHHHHhCc---ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE-ee
Confidence 45688999999998763 58999999999741 3678888889999999884 54
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.15 Score=47.85 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=67.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcC-----CC---------------------------CCCC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIE-----RG---------------------------SGDE-- 47 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~-----~~---------------------------~~~~-- 47 (341)
|-+|.+++-.|+.-|+..|..+||++.-++.+++|++.-. +. .++.
T Consensus 67 CNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~~~p~n~~ 146 (288)
T KOG2899|consen 67 CNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTTDFPDNVW 146 (288)
T ss_pred CCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccccccCCcchh
Confidence 5689999999998899999999999999999999998421 00 0000
Q ss_pred ccEEEEeccHHHHHHHhhhcCCcccEEEeCCC--------CC--CHHHHHHHHHhcccCCEEEEE
Q 019408 48 KRWVVTHFDANRVLSECYLKREFFDLIDIDSF--------GS--DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 48 ~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy--------gs--p~~fld~al~~v~~gGlL~vt 102 (341)
..-+=+..+..++|. . ...+||+|..=.- |. -..|+..+-+++.+||+|.|+
T Consensus 147 f~~~n~vle~~dfl~-~--~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 147 FQKENYVLESDDFLD-M--IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccEEEecchhhh-h--ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 000112345555562 2 3458999865431 11 246777888999999999994
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.13 Score=47.64 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=37.9
Q ss_pred EEEeccHHHHHHHhhhcCCcccEEEeCC-CCC--------C----------HHHHHHHHHhcccCCEEEE
Q 019408 51 VVTHFDANRVLSECYLKREFFDLIDIDS-FGS--------D----------SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 51 ~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygs--------p----------~~fld~al~~v~~gGlL~v 101 (341)
+++++|+.++|+.+ ..+.+|+|+.|| |+. . ..++..+.+.|++||.+++
T Consensus 3 ~l~~gD~le~l~~l--pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARF--PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhC--CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 57899999999876 356899999999 852 0 1334566789999999986
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.51 Score=48.85 Aligned_cols=99 Identities=12% Similarity=0.101 Sum_probs=73.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE---EeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI---DIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI---dlDP 78 (341)
+|.|-+-+++|...--.-++.+|++...+..+.+-++..++. ++.+++.|+..++... ....+|-| +-||
T Consensus 356 ~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-----N~~~~~~~~~~~~~~~--~~~sv~~i~i~FPDP 428 (506)
T PRK01544 356 FGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-----NFLLFPNNLDLILNDL--PNNSLDGIYILFPDP 428 (506)
T ss_pred CCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-----eEEEEcCCHHHHHHhc--CcccccEEEEECCCC
Confidence 689999999998522235889999988888777777767773 6778888987666543 23456755 5689
Q ss_pred C-CC--------CHHHHHHHHHhcccCCEEEEEecCCCC
Q 019408 79 F-GS--------DSSFLRTVFNAVKRDGLLYLTSTDGYS 108 (341)
Q Consensus 79 y-gs--------p~~fld~al~~v~~gGlL~vt~TD~~~ 108 (341)
. .. ...|++.-.+.|++||.|.+ +||-..
T Consensus 429 WpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~-~TD~~~ 466 (506)
T PRK01544 429 WIKNKQKKKRIFNKERLKILQDKLKDNGNLVF-ASDIEN 466 (506)
T ss_pred CCCCCCccccccCHHHHHHHHHhcCCCCEEEE-EcCCHH
Confidence 4 21 24889988999999999997 888644
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.32 Score=47.80 Aligned_cols=84 Identities=19% Similarity=0.204 Sum_probs=58.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe-ccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH-FDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~-~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+.|.|.++|.+|+..| .+|+++|+|++-.+.+++ .+.+ .+.... .|....+.+ .||+|+.==
T Consensus 175 ~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~----lGAd-----~~i~~~~~~~~~~~~~------~~d~ii~tv- 237 (339)
T COG1064 175 AGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKK----LGAD-----HVINSSDSDALEAVKE------IADAIIDTV- 237 (339)
T ss_pred CcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHH----hCCc-----EEEEcCCchhhHHhHh------hCcEEEECC-
Confidence 4688999999999778 679999999999998877 5542 221112 333333322 399664332
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..-++.++++|+.||-+.+..
T Consensus 238 --~~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 238 --GPATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred --ChhhHHHHHHHHhcCCEEEEEC
Confidence 1266788999999999999743
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.18 Score=43.32 Aligned_cols=79 Identities=15% Similarity=0.105 Sum_probs=52.4
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C---CC------C---HHH
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F---GS------D---SSF 85 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y---gs------p---~~f 85 (341)
+|++.||-++|++..++.++..++. +++++++.+=.. |.+... ..+.|.|...= | |. | ..-
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~----~~v~li~~sHe~-l~~~i~-~~~v~~~iFNLGYLPggDk~i~T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE----DRVTLILDSHEN-LDEYIP-EGPVDAAIFNLGYLPGGDKSITTKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G----SGEEEEES-GGG-GGGT---S--EEEEEEEESB-CTS-TTSB--HHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC----CcEEEEECCHHH-HHhhCc-cCCcCEEEEECCcCCCCCCCCCcCcHHHHHH
Confidence 6999999999999999999988874 467766544332 322221 13678777653 2 21 1 245
Q ss_pred HHHHHHhcccCCEEEEEe
Q 019408 86 LRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 86 ld~al~~v~~gGlL~vt~ 103 (341)
++.|++.|++||+|.+++
T Consensus 75 l~~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHhhccCCEEEEEE
Confidence 789999999999999865
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.21 Score=46.59 Aligned_cols=75 Identities=17% Similarity=0.085 Sum_probs=56.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCccc---EEEeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFD---LIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fD---vIdlDP 78 (341)
+|+|..+...+. .+ ..|+++|+|+..++.+++|+.. . .+++++++|+..+-.. .|| +|+-.+
T Consensus 38 ~G~G~lt~~L~~-~~-~~v~~iE~d~~~~~~l~~~~~~--~-----~~v~v~~~D~~~~~~~------~~d~~~~vvsNl 102 (253)
T TIGR00755 38 PGLGALTEPLLK-RA-KKVTAIEIDPRLAEILRKLLSL--Y-----ERLEVIEGDALKVDLP------DFPKQLKVVSNL 102 (253)
T ss_pred CCCCHHHHHHHH-hC-CcEEEEECCHHHHHHHHHHhCc--C-----CcEEEEECchhcCChh------HcCCcceEEEcC
Confidence 799999998887 45 4699999999999999988753 1 3678899999764321 355 888887
Q ss_pred -CCCCHHHHHHHHH
Q 019408 79 -FGSDSSFLRTVFN 91 (341)
Q Consensus 79 -ygsp~~fld~al~ 91 (341)
|.-+.+.+...+.
T Consensus 103 Py~i~~~il~~ll~ 116 (253)
T TIGR00755 103 PYNISSPLIFKLLE 116 (253)
T ss_pred ChhhHHHHHHHHhc
Confidence 7666677766554
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.65 E-value=1.9 Score=39.67 Aligned_cols=136 Identities=14% Similarity=0.120 Sum_probs=107.6
Q ss_pred ccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCc-ccEEEeCCC
Q 019408 2 CGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREF-FDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~-fDvIdlDPy 79 (341)
||.|.=||-.|.- +... |+.+|.+..=+.-+++=.+..++ ++++++++-|.++-.+ .+ ||+|-.=-+
T Consensus 76 SGaGfPGipLAI~~p~~~-vtLles~~Kk~~FL~~~~~eL~L-----~nv~i~~~RaE~~~~~-----~~~~D~vtsRAv 144 (215)
T COG0357 76 SGAGFPGIPLAIAFPDLK-VTLLESLGKKIAFLREVKKELGL-----ENVEIVHGRAEEFGQE-----KKQYDVVTSRAV 144 (215)
T ss_pred CCCCCchhhHHHhccCCc-EEEEccCchHHHHHHHHHHHhCC-----CCeEEehhhHhhcccc-----cccCcEEEeehc
Confidence 6888889998753 4444 99999999999999998888888 3689999999876432 13 999999888
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFS 159 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s 159 (341)
++-..+.+-++..++.||.+.+-- + ...+.-+..+.++....+-.++-+.+
T Consensus 145 a~L~~l~e~~~pllk~~g~~~~~k-------~----------------------~~~~~e~~e~~~a~~~~~~~~~~~~~ 195 (215)
T COG0357 145 ASLNVLLELCLPLLKVGGGFLAYK-------G----------------------LAGKDELPEAEKAILPLGGQVEKVFS 195 (215)
T ss_pred cchHHHHHHHHHhcccCCcchhhh-------H----------------------HhhhhhHHHHHHHHHhhcCcEEEEEE
Confidence 888888999999999988765311 1 34455677788888899999999999
Q ss_pred cccCCCCeEEEEEEEEeC
Q 019408 160 YYSYHGPVFRVMLRVHRK 177 (341)
Q Consensus 160 ~~~~~dhy~Rv~vrv~~~ 177 (341)
+.-|....-|..+-+.+.
T Consensus 196 ~~~p~~~~~r~l~ii~~~ 213 (215)
T COG0357 196 LTVPELDGERHLVIIRKR 213 (215)
T ss_pred eecCCCCCceEEEEEecc
Confidence 998888888887777654
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.26 Score=45.42 Aligned_cols=102 Identities=15% Similarity=0.181 Sum_probs=54.2
Q ss_pred CccccHh-HHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCC-----------------------------------
Q 019408 1 MCGCGIR-SLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERG----------------------------------- 43 (341)
Q Consensus 1 fagsG~r-gir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~----------------------------------- 43 (341)
+||+|.+ .+--+.. .-...|++-|||++++++.++|+.++..+
T Consensus 59 CCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l 138 (246)
T PF11599_consen 59 CCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESADRLRERL 138 (246)
T ss_dssp T-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 4677643 2222332 23578999999999999999999753110
Q ss_pred --CCCCccEEEEeccHHHHH--HHhhhcCCcccEEEeC-CCCCC------------HHHHHHHHHhcccCCEEEEEe
Q 019408 44 --SGDEKRWVVTHFDANRVL--SECYLKREFFDLIDID-SFGSD------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 44 --~~~~~~~~v~~~DA~~~l--~~~~~~~~~fDvIdlD-Pygsp------------~~fld~al~~v~~gGlL~vt~ 103 (341)
.|......+.+.|.++.- ..+ ..+...|+|+-| |||.- ..++++.-..+-.+++++|+.
T Consensus 139 ~~~g~~~p~~~~~aDvf~~~~~~~~-~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 139 AAEGGDEPHAIFRADVFDPSPLAVL-DAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHTTSS--EEEEE--TT-HHHHHHH-HTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEEEE
T ss_pred HhcCCCCchhheeecccCCchhhhh-ccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEEec
Confidence 111122445666666532 222 123346999999 79852 135566666777888888833
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.17 Score=46.43 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=52.7
Q ss_pred ccccHhHHHHhh---hCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC
Q 019408 2 CGCGIRSLRYLA---EAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~---e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD 77 (341)
||+|..+...+. +.|. .+|+++|+|+++++..+++...+++ ++...|+..+-. ....||+|..-
T Consensus 69 cG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~--------~~~~~~~~~l~~----~~~~fD~V~~~ 136 (232)
T PRK06202 69 CGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV--------TFRQAVSDELVA----EGERFDVVTSN 136 (232)
T ss_pred cCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC--------eEEEEecccccc----cCCCccEEEEC
Confidence 799998877654 2343 4799999999999999998765443 233344333211 24589999876
Q ss_pred C-C--CCC---HHHHHHHHHhcccCCEEEE
Q 019408 78 S-F--GSD---SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 78 P-y--gsp---~~fld~al~~v~~gGlL~v 101 (341)
- + -.. ..++..+.+.++ |.+.+
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEE
Confidence 4 2 111 135555555555 44444
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.045 Score=50.42 Aligned_cols=97 Identities=20% Similarity=0.095 Sum_probs=59.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHH-HHHHHHcCCCCC------CCccEEEEeccHHHHHHHhhhcCCcccE
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVI-LGNLKSIERGSG------DEKRWVVTHFDANRVLSECYLKREFFDL 73 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i-~~N~~~n~~~~~------~~~~~~v~~~DA~~~l~~~~~~~~~fDv 73 (341)
+||.|.=.+-.|. .|- +|+.+|+|+.|++.. ++|-....+... ...+++++++|.+.+=... ..+||+
T Consensus 45 gCG~g~D~~~La~-~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~---~g~fD~ 119 (218)
T PF05724_consen 45 GCGKGYDMLWLAE-QGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED---VGKFDL 119 (218)
T ss_dssp TTTTSCHHHHHHH-TTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC---HHSEEE
T ss_pred CCCChHHHHHHHH-CCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh---cCCceE
Confidence 4777777666665 675 799999999999998 333321111100 0135789999999753221 136998
Q ss_pred EE-------eCCCCCCHHHHHHHHHhcccCCE-EEEEe
Q 019408 74 ID-------IDSFGSDSSFLRTVFNAVKRDGL-LYLTS 103 (341)
Q Consensus 74 Id-------lDPygsp~~fld~al~~v~~gGl-L~vt~ 103 (341)
|+ |+| ..=..|.+...++|++||. |.+|-
T Consensus 120 iyDr~~l~Alpp-~~R~~Ya~~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 120 IYDRTFLCALPP-EMRERYAQQLASLLKPGGRGLLITL 156 (218)
T ss_dssp EEECSSTTTS-G-GGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred EEEecccccCCH-HHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 74 333 0013678888899999999 34443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.54 Score=45.71 Aligned_cols=90 Identities=18% Similarity=0.096 Sum_probs=59.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+.+|+++|.+++-.+.+++ .+.+ .-+.....|..+.+.+. ..+..+|+|+ |--|.+
T Consensus 187 ~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~~~~i~~~-~~~~g~d~vi-d~~g~~ 256 (358)
T TIGR03451 187 GVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT----HTVNSSGTDPVEAIRAL-TGGFGADVVI-DAVGRP 256 (358)
T ss_pred HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc----eEEcCCCcCHHHHHHHH-hCCCCCCEEE-ECCCCH
Confidence 456677888888899889999999998888754 4431 11111223444444333 2234589664 877754
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
..++.+++++++||.+++..
T Consensus 257 -~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 257 -ETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred -HHHHHHHHHhccCCEEEEEC
Confidence 46778999999999998744
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.85 Score=43.92 Aligned_cols=96 Identities=18% Similarity=0.095 Sum_probs=66.6
Q ss_pred ccccHhHHHHhhhC--CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 2 CGCGIRSLRYLAEA--KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 2 agsG~rgir~a~e~--ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
||.|--=+.++.+. ...+|..+|.|+..++.-++=++.+|++ +.+++.++||++.-.-... .-+.|++++==
T Consensus 144 aG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~----~i~~f~~~dAfd~~~l~~l-~p~P~l~iVsGL 218 (311)
T PF12147_consen 144 AGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE----DIARFEQGDAFDRDSLAAL-DPAPTLAIVSGL 218 (311)
T ss_pred cCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc----cceEEEecCCCCHhHhhcc-CCCCCEEEEecc
Confidence 56665555565542 2589999999999999999999999995 5568999999986322211 23568776644
Q ss_pred ---CCCCHHHHHH----HHHhcccCCEEEEEe
Q 019408 79 ---FGSDSSFLRT----VFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ---ygsp~~fld~----al~~v~~gGlL~vt~ 103 (341)
|... ..+.. .-.++.+||+|+.|.
T Consensus 219 ~ElF~Dn-~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 219 YELFPDN-DLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred hhhCCcH-HHHHHHHHHHHHHhCCCcEEEEcC
Confidence 4432 33333 335799999999754
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.36 Score=46.08 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=56.4
Q ss_pred cccHh---HHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHH-HcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC
Q 019408 3 GCGIR---SLRYLAEAKA-DFVMANDGNDAHRRVILGNLK-SIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID 77 (341)
Q Consensus 3 gsG~r---gir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~-~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD 77 (341)
|||-+ +|..+++.+. ..|+.+|+|++|+++.++=++ ..++. .+++++.+|+......+ ..||+|++-
T Consensus 128 GSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~----~~m~f~~~d~~~~~~dl----~~~DvV~lA 199 (276)
T PF03059_consen 128 GSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS----KRMSFITADVLDVTYDL----KEYDVVFLA 199 (276)
T ss_dssp ---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----SSEEEEES-GGGG-GG--------SEEEE-
T ss_pred cCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc----CCeEEEecchhcccccc----ccCCEEEEh
Confidence 66743 5666765443 468899999999999988666 44553 56888999987654332 379999999
Q ss_pred CCCC----C-HHHHHHHHHhcccCCEEEEEe
Q 019408 78 SFGS----D-SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 78 Pygs----p-~~fld~al~~v~~gGlL~vt~ 103 (341)
-... + ...++...+.+++|..|.+-+
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 8432 2 355677778899999999854
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.43 Score=45.47 Aligned_cols=90 Identities=17% Similarity=0.126 Sum_probs=64.7
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+|||.+|.-+++--+ -.+++..|.+..-.+...+-++.-++. +.+++++.|+...=... +..++|.|+||=
T Consensus 114 TGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~----~~vt~~hrDVc~~GF~~--ks~~aDaVFLDl-- 185 (314)
T KOG2915|consen 114 TGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG----DNVTVTHRDVCGSGFLI--KSLKADAVFLDL-- 185 (314)
T ss_pred CCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC----cceEEEEeecccCCccc--cccccceEEEcC--
Confidence 478888887776422 368999999998888888888888884 67889999987542211 134799999997
Q ss_pred CCHHH--HHHHHHhcccCC-EEE
Q 019408 81 SDSSF--LRTVFNAVKRDG-LLY 100 (341)
Q Consensus 81 sp~~f--ld~al~~v~~gG-lL~ 100 (341)
|+|. +..|.+.++.+| .||
T Consensus 186 -PaPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 186 -PAPWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred -CChhhhhhhhHHHhhhcCceEE
Confidence 4454 445566777666 554
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.28 Score=45.51 Aligned_cols=96 Identities=11% Similarity=0.162 Sum_probs=57.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHH-------cCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS-------IERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI 74 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~-------n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI 74 (341)
||.|.=.+-.|. .|.+ |+++|+|+.|++...+...+ +.........+++.++|.+++=.. .....+||.|
T Consensus 52 CGkg~D~~~LA~-~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~-~~~~~~fD~V 128 (226)
T PRK13256 52 CGCSIDMLFFLS-KGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI-ANNLPVFDIW 128 (226)
T ss_pred CCChHHHHHHHh-CCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc-ccccCCcCee
Confidence 566665555555 6875 99999999999987552110 000000123678999999985210 0112368986
Q ss_pred E-------eCCCCCCHHHHHHHHHhcccCCEEEE
Q 019408 75 D-------IDSFGSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 75 d-------lDPygsp~~fld~al~~v~~gGlL~v 101 (341)
+ |+| ..-..|+....++|++||.+.+
T Consensus 129 yDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 129 YDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred eeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEE
Confidence 3 333 0012567777888999887764
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.2 Score=43.12 Aligned_cols=91 Identities=18% Similarity=0.118 Sum_probs=57.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--y 79 (341)
||+|..+.|++. +||+.|+.+|-++..+-.-+-=-+..+.. ..+.... ....-|. . ...||+|+.== |
T Consensus 124 C~nGY~~frM~~-~GA~~ViGiDP~~lf~~QF~~i~~~lg~~----~~~~~lp-lgvE~Lp---~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 124 CNNGYYSFRMLG-RGAKSVIGIDPSPLFYLQFEAIKHFLGQD----PPVFELP-LGVEDLP---N-LGAFDTVFSMGVLY 193 (315)
T ss_pred CCCcHHHHHHhh-cCCCEEEEECCChHHHHHHHHHHHHhCCC----ccEEEcC-cchhhcc---c-cCCcCEEEEeeehh
Confidence 689999999998 69999999999877654422211222221 1222221 1222222 2 35799997543 4
Q ss_pred C--CCHHHHHHHHHhcccCCEEEEE
Q 019408 80 G--SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 g--sp~~fld~al~~v~~gGlL~vt 102 (341)
. +|...|...-+.|++||.|.+.
T Consensus 194 Hrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 194 HRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred ccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 3 4556677777889999999974
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.52 Score=41.97 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=49.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..+...+.. ....++++|+|+++++.+++ .++ ++++.|+...+.. ...+.||+|+.-. +
T Consensus 22 cG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~----~~~--------~~~~~d~~~~l~~--~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 22 CGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA----RGV--------NVIQGDLDEGLEA--FPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH----cCC--------eEEEEEhhhcccc--cCCCCcCEEEEhhHhH
Confidence 7999998777653 33457999999998887654 222 4567887653321 1235799998765 2
Q ss_pred --CCCHHHHHHHHHhc
Q 019408 80 --GSDSSFLRTVFNAV 93 (341)
Q Consensus 80 --gsp~~fld~al~~v 93 (341)
..+..++....+.+
T Consensus 87 ~~~d~~~~l~e~~r~~ 102 (194)
T TIGR02081 87 ATRNPEEILDEMLRVG 102 (194)
T ss_pred cCcCHHHHHHHHHHhC
Confidence 23445566655543
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.69 Score=41.17 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=65.6
Q ss_pred ccccHhHHHHhhhCCC--CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHh-hhcCCcccEEEeC-
Q 019408 2 CGCGIRSLRYLAEAKA--DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSEC-YLKREFFDLIDID- 77 (341)
Q Consensus 2 agsG~rgir~a~e~ga--~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~-~~~~~~fDvIdlD- 77 (341)
.|||++-=+.++ +|. +.+++++.|++-+..+.+-.. .+.++++||+.+=..+ ..++..||.|+--
T Consensus 57 PGTGV~TkaIL~-~gv~~~~L~~iE~~~dF~~~L~~~~p----------~~~ii~gda~~l~~~l~e~~gq~~D~viS~l 125 (194)
T COG3963 57 PGTGVITKAILS-RGVRPESLTAIEYSPDFVCHLNQLYP----------GVNIINGDAFDLRTTLGEHKGQFFDSVISGL 125 (194)
T ss_pred CCccHhHHHHHh-cCCCccceEEEEeCHHHHHHHHHhCC----------CccccccchhhHHHHHhhcCCCeeeeEEecc
Confidence 489999888877 675 679999999999998876322 2357899999875222 2356789988765
Q ss_pred CCCC-----CHHHHHHHHHhcccCCEEEE
Q 019408 78 SFGS-----DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 78 Pygs-----p~~fld~al~~v~~gGlL~v 101 (341)
|+-+ ....+++++..+..||-|..
T Consensus 126 Pll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 126 PLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred ccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 4332 23668899999999998883
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.96 Score=43.57 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=58.1
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+..|++.|.+++-.+.+++ .+.. .-+.....+... +.+. ..+..+|.+++|.-|.+
T Consensus 171 ~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~~~-~~~~-~~~~~~d~~v~d~~G~~ 240 (347)
T PRK10309 171 TIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAM----QTFNSREMSAPQ-IQSV-LRELRFDQLILETAGVP 240 (347)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc----eEecCcccCHHH-HHHH-hcCCCCCeEEEECCCCH
Confidence 456677888887898888999999988887643 3431 111111122222 2222 22346887889997753
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
..++.+++++++||.+.+
T Consensus 241 -~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 241 -QTVELAIEIAGPRAQLAL 258 (347)
T ss_pred -HHHHHHHHHhhcCCEEEE
Confidence 578889999999999886
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.24 Score=48.25 Aligned_cols=103 Identities=18% Similarity=0.114 Sum_probs=67.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHH--cCCCCCCCccEEEEeccHHHHHH-Hhhh-cCCcccEEEeC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS--IERGSGDEKRWVVTHFDANRVLS-ECYL-KREFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~--n~~~~~~~~~~~v~~~DA~~~l~-~~~~-~~~~fDvIdlD 77 (341)
||-|.=-|.|-+ +|+.+.+.+||...+++.+++-.+. +... -..-.+.++.+|++.... .... ...+||+|=.-
T Consensus 126 CGKGGDLlKw~k-AgI~~~igiDIAevSI~qa~~RYrdm~~r~~-~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQ 203 (389)
T KOG1975|consen 126 CGKGGDLLKWDK-AGIGEYIGIDIAEVSINQARKRYRDMKNRFK-KFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQ 203 (389)
T ss_pred cCCcccHhHhhh-hcccceEeeehhhccHHHHHHHHHHHHhhhh-cccceeEEEEeccchhHHHHhccCCCCCcceeeee
Confidence 466666788887 7999999999999999998876652 1110 000135788999886533 3221 23349988443
Q ss_pred C-----CCC---CHHHHHHHHHhcccCCEEEEEecCC
Q 019408 78 S-----FGS---DSSFLRTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 78 P-----ygs---p~~fld~al~~v~~gGlL~vt~TD~ 106 (341)
= |-+ +.-++..+.++|++||+.+-|-.|.
T Consensus 204 F~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 204 FAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred eeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 2 332 2334556678899999999766544
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.67 E-value=1.3 Score=42.81 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=63.8
Q ss_pred CCCEEEEeeCCHHHHHHHHHHHHH--cCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC---CCCCC-----HHH
Q 019408 16 KADFVMANDGNDAHRRVILGNLKS--IERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---SFGSD-----SSF 85 (341)
Q Consensus 16 ga~~V~~~Dis~~A~~~i~~N~~~--n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---Pygsp-----~~f 85 (341)
-+..++.+|++...+++-++=+.. ++.+ +.++.+.-+|.+.+|+... .+.||||++| |-|.+ .+|
T Consensus 144 ~ve~i~~~eiD~~Vie~sk~y~p~la~gy~---~~~v~l~iGDG~~fl~~~~--~~~~dVii~dssdpvgpa~~lf~~~~ 218 (337)
T KOG1562|consen 144 SVENILLCEIDENVIESSKQYLPTLACGYE---GKKVKLLIGDGFLFLEDLK--ENPFDVIITDSSDPVGPACALFQKPY 218 (337)
T ss_pred cccceeeehhhHHHHHHHHHHhHHHhcccC---CCceEEEeccHHHHHHHhc--cCCceEEEEecCCccchHHHHHHHHH
Confidence 356789999999999988876664 3553 3578888899999998763 4589999987 45532 155
Q ss_pred HHHHHHhcccCCEEEEEec
Q 019408 86 LRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 86 ld~al~~v~~gGlL~vt~T 104 (341)
....+.++|.+|++++.+-
T Consensus 219 ~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 219 FGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred HHHHHHhhCCCcEEEEecc
Confidence 5677889999999998653
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.58 E-value=1.1 Score=41.20 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=52.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||||..+...+... ..+|+++|+|++.++..++.. ..+++|+..+ ....+.||+|..--
T Consensus 60 cGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~-------------~~~~~d~~~l----p~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 60 AGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD-------------DKVVGSFEAL----PFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc-------------ceEEechhhC----CCCCCCEEEEEecChhh
Confidence 79999988877632 358999999999999877531 1246777643 22346899997643
Q ss_pred -CCCCHHHHHHHHHhcccC
Q 019408 79 -FGSDSSFLRTVFNAVKRD 96 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~g 96 (341)
+..+...+....+.+++.
T Consensus 122 ~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 122 ASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ccCCHHHHHHHHHHHhcCc
Confidence 222345566667788874
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.32 Score=45.13 Aligned_cols=84 Identities=19% Similarity=0.027 Sum_probs=49.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHH-HHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRV-ILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~-i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||||.++..++. .|+.+|+++|+++.-+.. +++|.+- ...-..|+..+-.+ .-..|++..|= |
T Consensus 84 ~gtG~~t~~l~~-~ga~~v~avD~~~~~l~~~l~~~~~v----------~~~~~~ni~~~~~~----~~~~d~~~~Dvsf 148 (228)
T TIGR00478 84 SSTGGFTDCALQ-KGAKEVYGVDVGYNQLAEKLRQDERV----------KVLERTNIRYVTPA----DIFPDFATFDVSF 148 (228)
T ss_pred cCCCHHHHHHHH-cCCCEEEEEeCCHHHHHHHHhcCCCe----------eEeecCCcccCCHh----HcCCCceeeeEEE
Confidence 799999998887 699999999999964433 4443221 00111222211000 01136666665 5
Q ss_pred CCCHHHHHHHHHhcccCCEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~v 101 (341)
-|-+-.++...+++++ |.+.+
T Consensus 149 iS~~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 149 ISLISILPELDLLLNP-NDLTL 169 (228)
T ss_pred eehHhHHHHHHHHhCc-CeEEE
Confidence 5554556777788888 66654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.42 E-value=1.5 Score=41.01 Aligned_cols=88 Identities=16% Similarity=0.122 Sum_probs=56.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+.+|+++|.+++-.+++++ .+.+ .+ +...+..+.+.+. ..+..+|+| +|--|.+
T Consensus 131 ~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~-----~~-i~~~~~~~~~~~~-~~~~g~d~v-id~~G~~ 198 (280)
T TIGR03366 131 MLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT-----AL-AEPEVLAERQGGL-QNGRGVDVA-LEFSGAT 198 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc-----Ee-cCchhhHHHHHHH-hCCCCCCEE-EECCCCh
Confidence 456677778887899889999999988777665 4441 11 1111111222222 123468976 4766654
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
.-++.++++++++|.+.+..
T Consensus 199 -~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 199 -AAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred -HHHHHHHHHhcCCCEEEEec
Confidence 56778999999999998644
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.17 E-value=1.3 Score=42.29 Aligned_cols=89 Identities=17% Similarity=0.088 Sum_probs=56.1
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+++|++.|.+++-.+.+++ .+.. ..+.....+ .+.+.+. ..+..+|+|+ |--|++
T Consensus 174 ~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~----~~i~~~~~~-~~~~~~~-~~~~~~d~vi-d~~g~~ 242 (339)
T cd08239 174 PVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGAD----FVINSGQDD-VQEIREL-TSGAGADVAI-ECSGNT 242 (339)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC----EEEcCCcch-HHHHHHH-hCCCCCCEEE-ECCCCH
Confidence 456677788887898889999999887777644 3431 111111122 2223222 2234689764 665543
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
..++.++++++.+|-+++..
T Consensus 243 -~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 243 -AARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred -HHHHHHHHHhhcCCEEEEEc
Confidence 56678899999999998644
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=91.13 E-value=1.1 Score=43.84 Aligned_cols=88 Identities=20% Similarity=0.130 Sum_probs=57.2
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+++|++.|.+++-.+++++ .+.+ ..+.....|..+.+.+.. +..+|+|+ |--|.+
T Consensus 202 ~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~----~~i~~~~~~~~~~i~~~~--~~g~d~vi-d~~G~~ 270 (371)
T cd08281 202 GVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT----ATVNAGDPNAVEQVRELT--GGGVDYAF-EMAGSV 270 (371)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc----eEeCCCchhHHHHHHHHh--CCCCCEEE-ECCCCh
Confidence 456667778887899889999999998887765 4442 111111233333344332 22689764 665543
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
..++.++++++++|-+++.
T Consensus 271 -~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 271 -PALETAYEITRRGGTTVTA 289 (371)
T ss_pred -HHHHHHHHHHhcCCEEEEE
Confidence 5778899999999988763
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=90.75 E-value=1.4 Score=42.99 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=58.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|.|..+|..|+..|+ .+++.-.+++-.+.+++ .+.+ .-+.....|.-+-+++. ..++.+|+| +|+-|.
T Consensus 153 GgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~----lGAd----~vi~y~~~~~~~~v~~~-t~g~gvDvv-~D~vG~ 221 (326)
T COG0604 153 GGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE----LGAD----HVINYREEDFVEQVREL-TGGKGVDVV-LDTVGG 221 (326)
T ss_pred chHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh----cCCC----EEEcCCcccHHHHHHHH-cCCCCceEE-EECCCH
Confidence 4678888999998888 56666666666665444 4431 12223345555555443 234569975 689775
Q ss_pred CHHHHHHHHHhcccCCEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~v 101 (341)
+.+..+++.++++|.+.+
T Consensus 222 --~~~~~~l~~l~~~G~lv~ 239 (326)
T COG0604 222 --DTFAASLAALAPGGRLVS 239 (326)
T ss_pred --HHHHHHHHHhccCCEEEE
Confidence 777779999999999986
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.72 Score=44.00 Aligned_cols=77 Identities=21% Similarity=0.196 Sum_probs=52.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
++.|..++.+|+..|+..|++.|.+++-.+.+++. . +++ ..+. .+..||+|+ |--|.
T Consensus 154 G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~----------~i~--~~~~------~~~g~Dvvi-d~~G~ 210 (308)
T TIGR01202 154 GTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E----------VLD--PEKD------PRRDYRAIY-DASGD 210 (308)
T ss_pred CHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c----------ccC--hhhc------cCCCCCEEE-ECCCC
Confidence 35677788888878998888889988765544321 1 111 0000 134689664 88776
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
+ ..++.++++++++|.+.+.
T Consensus 211 ~-~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 211 P-SLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred H-HHHHHHHHhhhcCcEEEEE
Confidence 4 5678999999999999964
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=89.94 E-value=2.2 Score=40.79 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=57.7
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...+.+|+..|+.+|++.+.+++-.+.+++. .+.+ ..+.....|..+.+.+.. +..+|+|+ |.-|.
T Consensus 166 ~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~----~vi~~~~~~~~~~i~~~~--~~gvd~vi-d~~g~- 234 (345)
T cd08293 166 ACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD----AAINYKTDNVAERLRELC--PEGVDVYF-DNVGG- 234 (345)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc----EEEECCCCCHHHHHHHHC--CCCceEEE-ECCCc-
Confidence 5667778888878887899999998877777653 2432 111111234444444432 34689775 88775
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
+.++.++++++++|-++.
T Consensus 235 -~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 235 -EISDTVISQMNENSHIIL 252 (345)
T ss_pred -HHHHHHHHHhccCCEEEE
Confidence 346889999999999885
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.92 E-value=0.6 Score=45.47 Aligned_cols=66 Identities=18% Similarity=0.113 Sum_probs=47.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
|||.|.+++=+-. .|.+-+++||+++.|+++.+.|... ..+...|...+..+... +..+|+|.-=|
T Consensus 10 FsG~GG~~lGf~~-agf~~~~a~Eid~~a~~ty~~n~~~----------~~~~~~di~~~~~~~~~-~~~~DvligGp 75 (328)
T COG0270 10 FAGIGGLSLGFEE-AGFEIVFANEIDPPAVATYKANFPH----------GDIILGDIKELDGEALR-KSDVDVLIGGP 75 (328)
T ss_pred ccCCchHHHHHHh-cCCeEEEEEecCHHHHHHHHHhCCC----------CceeechHhhcChhhcc-ccCCCEEEeCC
Confidence 7888887744433 7889999999999999999998873 23456777766544321 11678887776
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=89.90 E-value=1.7 Score=42.42 Aligned_cols=87 Identities=14% Similarity=0.076 Sum_probs=58.2
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe----ccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH----FDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~----~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
.|+..+.+|+-.||++|++.|.++..++++++ .|.+ ......+ .+..+....... +..||+.+ |-=
T Consensus 181 IGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~----~~~~~~~~~~~~~~~~~v~~~~g-~~~~d~~~-dCs 250 (354)
T KOG0024|consen 181 IGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGAT----VTDPSSHKSSPQELAELVEKALG-KKQPDVTF-DCS 250 (354)
T ss_pred HHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCe----EEeeccccccHHHHHHHHHhhcc-ccCCCeEE-Ecc
Confidence 57888889988899999999999999999998 4442 1111122 233333333322 23488764 333
Q ss_pred CCCHHHHHHHHHhcccCCEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~v 101 (341)
| ..+-++.|+++++.||.+.+
T Consensus 251 G-~~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 251 G-AEVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred C-chHHHHHHHHHhccCCEEEE
Confidence 3 23668899999999999665
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.38 Score=47.12 Aligned_cols=106 Identities=19% Similarity=0.168 Sum_probs=63.1
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCC-CC----CccEEEEeccHHHH-HHHhhhc-CCcccEEE
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGS-GD----EKRWVVTHFDANRV-LSECYLK-REFFDLID 75 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~-~~----~~~~~v~~~DA~~~-l~~~~~~-~~~fDvId 75 (341)
|=|.==.-|.. .++.+++.+|+++.+++-+++=.+...-.. .. .-....+..|++.- +...... ..+||+|-
T Consensus 72 GkGGDL~Kw~~-~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVS 150 (331)
T PF03291_consen 72 GKGGDLQKWQK-AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVS 150 (331)
T ss_dssp TTTTTHHHHHH-TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEE
T ss_pred CCchhHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceee
Confidence 33333345555 689999999999999998887663211000 00 01345678888632 2222222 35899995
Q ss_pred eCC-----CCC---CHHHHHHHHHhcccCCEEEEEecCCCCC
Q 019408 76 IDS-----FGS---DSSFLRTVFNAVKRDGLLYLTSTDGYSS 109 (341)
Q Consensus 76 lDP-----ygs---p~~fld~al~~v~~gGlL~vt~TD~~~l 109 (341)
+== |.+ +..|+..+-..|++||+++.|..|...+
T Consensus 151 cQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 151 CQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp EES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 542 333 3357778888999999999988876554
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.83 Score=48.66 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=40.1
Q ss_pred cEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC---C----HHHHHHHHHhcccCCEEEEEec
Q 019408 49 RWVVTHFDANRVLSECYLKREFFDLIDIDSFGS---D----SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 49 ~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs---p----~~fld~al~~v~~gGlL~vt~T 104 (341)
..++..+||.+.+.++. .+||+|++|||.. | .+++...-+++++||.|.. .|
T Consensus 148 ~l~l~~gd~~~~~~~~~---~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t-~t 206 (662)
T PRK01747 148 TLDLWFGDANELLPQLD---ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT-FT 206 (662)
T ss_pred EEEEEecCHHHHHHhcc---ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE-ee
Confidence 34578899999998763 3699999999973 1 3666777788999999984 54
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=89.19 E-value=2.2 Score=41.43 Aligned_cols=78 Identities=21% Similarity=0.126 Sum_probs=55.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcC-CcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKR-EFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~-~~fDvIdlDPygs 81 (341)
|-|.=+...+...+..+|+++|.++.|++..+++++..+ +++++++++-..+...+...+ ..+|.|.+|- |-
T Consensus 30 G~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~------~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~DL-Gv 102 (305)
T TIGR00006 30 GFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE------GRVVLIHDNFANFFEHLDELLVTKIDGILVDL-GV 102 (305)
T ss_pred CChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC------CcEEEEeCCHHHHHHHHHhcCCCcccEEEEec-cC
Confidence 667777777764333789999999999999999887431 467888888877665443222 4699999997 33
Q ss_pred CHHHHH
Q 019408 82 DSSFLR 87 (341)
Q Consensus 82 p~~fld 87 (341)
.++.+|
T Consensus 103 SS~Qld 108 (305)
T TIGR00006 103 SSPQLD 108 (305)
T ss_pred CHhhcC
Confidence 335555
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.17 E-value=2.3 Score=41.82 Aligned_cols=87 Identities=15% Similarity=0.053 Sum_probs=56.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe--ccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH--FDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~--~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+.|...+.+|+..|+.+|+++|.+++-.+.+++ .+.+ ..+.... .|..+.+.+.. .+ .+|+| +|--|
T Consensus 209 ~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~----~~i~~~~~~~~~~~~v~~~~-~~-g~dvv-id~~G 277 (381)
T PLN02740 209 AVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT----DFINPKDSDKPVHERIREMT-GG-GVDYS-FECAG 277 (381)
T ss_pred HHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc----EEEecccccchHHHHHHHHh-CC-CCCEE-EECCC
Confidence 456677888888898889999999988887765 4442 1111111 12333343332 22 58965 67767
Q ss_pred CCHHHHHHHHHhcccC-CEEEE
Q 019408 81 SDSSFLRTVFNAVKRD-GLLYL 101 (341)
Q Consensus 81 sp~~fld~al~~v~~g-GlL~v 101 (341)
.+ ..++.+++++++| |.+.+
T Consensus 278 ~~-~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 278 NV-EVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred Ch-HHHHHHHHhhhcCCCEEEE
Confidence 54 6788899999886 87765
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.14 E-value=2.6 Score=41.51 Aligned_cols=87 Identities=11% Similarity=0.062 Sum_probs=56.7
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe---ccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH---FDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~---~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+.|...+.+|+..|+..|++.|.+++-.+.+++ .+.+ .+.-.+ .|..+.+.+... + .+|+| +|.-
T Consensus 204 ~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~-----~~i~~~~~~~~~~~~v~~~~~-~-g~d~v-id~~ 271 (378)
T PLN02827 204 TVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVT-----DFINPNDLSEPIQQVIKRMTG-G-GADYS-FECV 271 (378)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc-----EEEcccccchHHHHHHHHHhC-C-CCCEE-EECC
Confidence 456666778887898889999999887776644 4542 211111 234444444322 2 68976 4776
Q ss_pred CCCHHHHHHHHHhcccC-CEEEEE
Q 019408 80 GSDSSFLRTVFNAVKRD-GLLYLT 102 (341)
Q Consensus 80 gsp~~fld~al~~v~~g-GlL~vt 102 (341)
|.+ ..+..+++++++| |.+.+-
T Consensus 272 G~~-~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 272 GDT-GIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCh-HHHHHHHHhhccCCCEEEEE
Confidence 754 4678899999998 998753
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=88.89 E-value=3.2 Score=39.46 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=56.8
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe--ccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH--FDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~--~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+.|...+.+|+..|+ +|++.+.+++-.+.+++ .+.+ .+--.. .+..+.+... .+..+|+|+ |..|
T Consensus 150 ~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~-----~vi~~~~~~~~~~~~~~~--~~~gvdvv~-d~~G 216 (325)
T TIGR02825 150 AVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFD-----VAFNYKTVKSLEETLKKA--SPDGYDCYF-DNVG 216 (325)
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC-----EEEeccccccHHHHHHHh--CCCCeEEEE-ECCC
Confidence 467777888887787 58889999888777754 4442 211112 1233334333 234689775 8887
Q ss_pred CCHHHHHHHHHhcccCCEEEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt 102 (341)
. +.++.++++++++|-+..-
T Consensus 217 ~--~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 217 G--EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred H--HHHHHHHHHhCcCcEEEEe
Confidence 5 5568899999999999863
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=88.01 E-value=0.66 Score=43.96 Aligned_cols=63 Identities=19% Similarity=0.048 Sum_probs=42.5
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
|||.|.+++=+-. .|.+.|+++|+++.|+++.+.|.. . +..+|..++-.... .+ .+|+|.-=|
T Consensus 7 FsG~Gg~~~g~~~-ag~~~~~a~e~~~~a~~~y~~N~~-~-----------~~~~Di~~~~~~~l-~~-~~D~l~ggp 69 (335)
T PF00145_consen 7 FSGIGGFSLGLEQ-AGFEVVWAVEIDPDACETYKANFP-E-----------VICGDITEIDPSDL-PK-DVDLLIGGP 69 (335)
T ss_dssp T-TTTHHHHHHHH-TTEEEEEEEESSHHHHHHHHHHHT-E-----------EEESHGGGCHHHHH-HH-T-SEEEEE-
T ss_pred ccCccHHHHHHHh-cCcEEEEEeecCHHHHHhhhhccc-c-----------cccccccccccccc-cc-cceEEEecc
Confidence 7899987765544 788899999999999999999996 2 23444444432211 11 489998887
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
Probab=87.98 E-value=6 Score=30.69 Aligned_cols=77 Identities=17% Similarity=0.106 Sum_probs=49.5
Q ss_pred EEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC---CCCCCHHHHHHHHHhcccC
Q 019408 20 VMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---SFGSDSSFLRTVFNAVKRD 96 (341)
Q Consensus 20 V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---Pygsp~~fld~al~~v~~g 96 (341)
|..+|-++...+.+++-++..++. .+ ....|..+.+..... ..||+|++| |-++...++...-+.-...
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~-----~v-~~~~~~~~~~~~~~~--~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~ 72 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYE-----EV-TTASSGEEALELLKK--HPPDLIIIDLELPDGDGLELLEQIRQINPSI 72 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEE-----EE-EEESSHHHHHHHHHH--STESEEEEESSSSSSBHHHHHHHHHHHTTTS
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC-----EE-EEECCHHHHHHHhcc--cCceEEEEEeeeccccccccccccccccccc
Confidence 567899999999999999966551 22 356677777766533 469999999 4343344454432222344
Q ss_pred CEEEEEec
Q 019408 97 GLLYLTST 104 (341)
Q Consensus 97 GlL~vt~T 104 (341)
.++.+|.+
T Consensus 73 ~ii~~t~~ 80 (112)
T PF00072_consen 73 PIIVVTDE 80 (112)
T ss_dssp EEEEEESS
T ss_pred cEEEecCC
Confidence 55556544
|
Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A .... |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=87.84 E-value=3.3 Score=39.08 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=57.2
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+++|+..|+ +|++.+.+++-.+.+++ .+.+ .-+.....|..+.+.... +..+|+|+ |..|.
T Consensus 155 ~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~----~vi~~~~~~~~~~v~~~~--~~gvd~vl-d~~g~- 221 (329)
T cd08294 155 AVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFD----AVFNYKTVSLEEALKEAA--PDGIDCYF-DNVGG- 221 (329)
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC----EEEeCCCccHHHHHHHHC--CCCcEEEE-ECCCH-
Confidence 456677888887787 58899999988888765 3442 111111234444444332 34689765 88775
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
+.+..++++++++|-+...
T Consensus 222 -~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 222 -EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred -HHHHHHHHhhccCCEEEEE
Confidence 6778899999999998753
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=87.66 E-value=0.22 Score=48.88 Aligned_cols=71 Identities=23% Similarity=0.207 Sum_probs=50.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHH-------HHHHHHHHcCCCCCCCcc-EEEEeccHHHHHHHhhhcCCccc
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRR-------VILGNLKSIERGSGDEKR-WVVTHFDANRVLSECYLKREFFD 72 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~-------~i~~N~~~n~~~~~~~~~-~~v~~~DA~~~l~~~~~~~~~fD 72 (341)
|.|||.+=+-+|. -|| .|+.-|||-..+. .|+.|++.-+.. .. ..++.+|...-- ..+...||
T Consensus 216 FVGTGslLvsaa~-FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~----~~fldvl~~D~sn~~---~rsn~~fD 286 (421)
T KOG2671|consen 216 FVGTGSLLVSAAH-FGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSS----SQFLDVLTADFSNPP---LRSNLKFD 286 (421)
T ss_pred ccccCceeeehhh-hcc-eeeccccchheeecccCCCcchhHhHHHhCCc----chhhheeeecccCcc---hhhcceee
Confidence 6799987666665 565 6899999966555 789999987753 22 346677765431 12256899
Q ss_pred EEEeCC-CC
Q 019408 73 LIDIDS-FG 80 (341)
Q Consensus 73 vIdlDP-yg 80 (341)
-|+.|| ||
T Consensus 287 aIvcDPPYG 295 (421)
T KOG2671|consen 287 AIVCDPPYG 295 (421)
T ss_pred EEEeCCCcc
Confidence 999999 76
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.60 E-value=8.6 Score=36.37 Aligned_cols=120 Identities=17% Similarity=0.199 Sum_probs=84.9
Q ss_pred CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCCCHHHH------H
Q 019408 15 AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FGSDSSFL------R 87 (341)
Q Consensus 15 ~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygsp~~fl------d 87 (341)
+..++..+++..|+-..+++.|+.. +.+++|.+.|-+..+....-.+++=-+|.||| |-...+|- .
T Consensus 108 R~qDRl~l~ELHp~D~~~L~~~f~~-------d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~ 180 (279)
T COG2961 108 REQDRLVLTELHPSDAPLLRNNFAG-------DRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALA 180 (279)
T ss_pred chhceeeeeecCccHHHHHHHHhCC-------CcceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHH
Confidence 5678999999999999999999982 14789999999999987766666678999999 76544441 1
Q ss_pred ---------------------------HHHHhcccCCEEEEEe-----cCCCCCCCCCchhHHhhhccccCCCCCchhhh
Q 019408 88 ---------------------------TVFNAVKRDGLLYLTS-----TDGYSSGGHRPNNSLASYGAYILPMPYSNEIG 135 (341)
Q Consensus 88 ---------------------------~al~~v~~gGlL~vt~-----TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~ 135 (341)
.+++.+.-.-+|.++- +|..-+.|+ |-...+-+|.=|..
T Consensus 181 ~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i~kiL~iEL~VrP~~d~~gm~gS---------GMivINPPwtle~q 251 (279)
T COG2961 181 EAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGIRKILQIELAVRPDSDPRGMNGS---------GMIVINPPWTLEQQ 251 (279)
T ss_pred HHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCccceeeeEEEecCCCCCCCccce---------eEEEECCCccHHHH
Confidence 2233333334455432 222223332 34567889999999
Q ss_pred HHHHHHHHHHHHHhc
Q 019408 136 LRMLIGGAVREASAQ 150 (341)
Q Consensus 136 lR~ll~~i~~~Aa~~ 150 (341)
++.++-.+.+.-+.-
T Consensus 252 l~~~LP~L~~~L~~~ 266 (279)
T COG2961 252 LRAALPWLTTLLAQD 266 (279)
T ss_pred HHHHHHHHHHHhccC
Confidence 999999988876654
|
|
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=87.10 E-value=5.1 Score=38.07 Aligned_cols=88 Identities=14% Similarity=0.056 Sum_probs=54.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+ +|++.+.+++-.+.+++ .+.+ .-+.....|..+.+.+.. .+..+|+|+ |.-|.
T Consensus 155 ~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~----~~i~~~~~~~~~~v~~~~-~~~~~d~vi-d~~g~- 222 (324)
T cd08291 155 ALGRMLVRLCKADGI-KVINIVRRKEQVDLLKK----IGAE----YVLNSSDPDFLEDLKELI-AKLNATIFF-DAVGG- 222 (324)
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCc----EEEECCCccHHHHHHHHh-CCCCCcEEE-ECCCc-
Confidence 345555677777788 58899999988877765 4542 111111234333343332 234689775 87665
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
+....+++.++++|-+++..
T Consensus 223 -~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 223 -GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred -HHHHHHHHhhCCCCEEEEEE
Confidence 44566789999999887543
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=86.85 E-value=1.2 Score=43.18 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=45.7
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
|||.|.+++=+-. .|.+-|+++|+++.|+++.+.|... .++++|..++-... -..+|++.--|
T Consensus 5 F~G~GG~~~Gl~~-aG~~~~~a~e~~~~a~~ty~~N~~~-----------~~~~~Di~~~~~~~---~~~~dvl~gg~ 67 (315)
T TIGR00675 5 FAGIGGIRLGFEQ-AGFKCVFASEIDKYAQKTYEANFGN-----------KVPFGDITKISPSD---IPDFDILLGGF 67 (315)
T ss_pred ecCccHHHHHHHH-cCCeEEEEEeCCHHHHHHHHHhCCC-----------CCCccChhhhhhhh---CCCcCEEEecC
Confidence 7999987765544 7888899999999999999998641 23456766653221 12479988887
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.76 E-value=1.1 Score=41.38 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=60.4
Q ss_pred cHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC--
Q 019408 5 GIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD-- 82 (341)
Q Consensus 5 G~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp-- 82 (341)
+.+.+...+..-++.+++.|+++..++...+|++.+++. +++++..+|-+..+.. +..+|+|.+-=.|-.
T Consensus 28 AYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~----~~i~vr~~dgl~~l~~----~d~~d~ivIAGMGG~lI 99 (226)
T COG2384 28 AYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS----ERIDVRLGDGLAVLEL----EDEIDVIVIAGMGGTLI 99 (226)
T ss_pred hHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc----ceEEEeccCCccccCc----cCCcCEEEEeCCcHHHH
Confidence 345666666334789999999999999999999999885 6788888988766643 336899998887742
Q ss_pred HHHHHHHHHhcc
Q 019408 83 SSFLRTVFNAVK 94 (341)
Q Consensus 83 ~~fld~al~~v~ 94 (341)
+.+++..-+.++
T Consensus 100 ~~ILee~~~~l~ 111 (226)
T COG2384 100 REILEEGKEKLK 111 (226)
T ss_pred HHHHHHhhhhhc
Confidence 245555544444
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=86.70 E-value=3.2 Score=40.18 Aligned_cols=84 Identities=14% Similarity=0.111 Sum_probs=52.5
Q ss_pred cccHhHHHHhhhCCCCEEEEeeC---CHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDG---NDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Di---s~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+.|..++.+|+..|+ +|+++|. +++-.+++++ .+. +.+.....|..+ .. ....||+ ++|.-
T Consensus 183 ~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~Ga-----~~v~~~~~~~~~-~~----~~~~~d~-vid~~ 246 (355)
T cd08230 183 PIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LGA-----TYVNSSKTPVAE-VK----LVGEFDL-IIEAT 246 (355)
T ss_pred HHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cCC-----EEecCCccchhh-hh----hcCCCCE-EEECc
Confidence 456677778887788 6888886 6777776654 443 111111112111 11 1236884 56787
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
|++ ..++.+++.++++|.+++..
T Consensus 247 g~~-~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 247 GVP-PLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CCH-HHHHHHHHHccCCcEEEEEe
Confidence 754 57889999999999887643
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=86.57 E-value=3.7 Score=39.66 Aligned_cols=89 Identities=13% Similarity=0.107 Sum_probs=55.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEec---cHHHHHHHhhhcCCcccE---EEe
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF---DANRVLSECYLKREFFDL---IDI 76 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~---DA~~~l~~~~~~~~~fDv---Idl 76 (341)
+.|...+.+|+..|+ +|++.|.+++-.+.+++ .+.. ..+..... |..+.+.+. ..+..+|. +.+
T Consensus 177 ~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~~~~~~~~~~~-t~~~g~d~~~d~v~ 246 (349)
T TIGR03201 177 GVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG----FGAD----LTLNPKDKSAREVKKLIKAF-AKARGLRSTGWKIF 246 (349)
T ss_pred HHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----hCCc----eEecCccccHHHHHHHHHhh-cccCCCCCCcCEEE
Confidence 346666778887788 59999999988777654 3431 11111121 333333332 22345662 567
Q ss_pred CCCCCCHHHHHHHHHhcccCCEEEEE
Q 019408 77 DSFGSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 77 DPygsp~~fld~al~~v~~gGlL~vt 102 (341)
|.-|.+ ..++.+++++++||.+.+.
T Consensus 247 d~~g~~-~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 247 ECSGSK-PGQESALSLLSHGGTLVVV 271 (349)
T ss_pred ECCCCh-HHHHHHHHHHhcCCeEEEE
Confidence 887754 6778899999999999863
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=86.53 E-value=4.2 Score=39.89 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=58.1
Q ss_pred cccHhHHH---HhhhCCCCEEEEeeCCHHHHHHHHH-HHHHcCCCCCCCccEEEEec-cHHHHHHHhhhcCCcccEEEeC
Q 019408 3 GCGIRSLR---YLAEAKADFVMANDGNDAHRRVILG-NLKSIERGSGDEKRWVVTHF-DANRVLSECYLKREFFDLIDID 77 (341)
Q Consensus 3 gsG~rgir---~a~e~ga~~V~~~Dis~~A~~~i~~-N~~~n~~~~~~~~~~~v~~~-DA~~~l~~~~~~~~~fDvIdlD 77 (341)
|.|..|+- .++-.|+..|+++|.+++-++++++ .... .+..... |+-..+.+. ..+..+|+|+ |
T Consensus 176 GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~---------~~~~~~~~~~~~~~~~~-t~g~g~D~vi-e 244 (350)
T COG1063 176 GAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD---------VVVNPSEDDAGAEILEL-TGGRGADVVI-E 244 (350)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe---------EeecCccccHHHHHHHH-hCCCCCCEEE-E
Confidence 55555554 5555799999999999999999987 2211 1111111 333333322 2345799765 3
Q ss_pred CCCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 78 SFGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 78 Pygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
-=|++ +.++.|++++++||-+.+..+
T Consensus 245 ~~G~~-~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 245 AVGSP-PALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred CCCCH-HHHHHHHHHhcCCCEEEEEec
Confidence 33543 678999999999999998665
|
|
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=86.27 E-value=5.2 Score=39.28 Aligned_cols=89 Identities=12% Similarity=0.077 Sum_probs=56.7
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEec----cHHHHHHHhhhcCCcccEEEeCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF----DANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~----DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+.|...+++|+..|+.+|++.+.+++-.+++++ .+++ .+...+. +..+.+.+. ..++.+|+|+ |.
T Consensus 214 ~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~-----~~v~~~~~~~~~~~~~v~~~-~~g~gvDvvl-d~ 282 (384)
T cd08265 214 PIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGAD-----YVFNPTKMRDCLSGEKVMEV-TKGWGADIQV-EA 282 (384)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC-----EEEcccccccccHHHHHHHh-cCCCCCCEEE-EC
Confidence 456667778887898889999999886655554 3431 2111111 222333333 2345689765 88
Q ss_pred CCCCHHHHHHHHHhcccCCEEEEE
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~vt 102 (341)
.|.+...++.+++.++.+|-+...
T Consensus 283 ~g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 283 AGAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEEE
Confidence 775545778889999999988753
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=85.79 E-value=1.8 Score=39.49 Aligned_cols=149 Identities=18% Similarity=0.173 Sum_probs=91.6
Q ss_pred ccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHh----hhcCCcccEEEe
Q 019408 2 CGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSEC----YLKREFFDLIDI 76 (341)
Q Consensus 2 agsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~----~~~~~~fDvIdl 76 (341)
||||-=+..+|.. ... .=.--|.++.....|+..+...++. +-...+..|+.+---.. ......||.|+.
T Consensus 34 SGtGqHa~~FA~~lP~l-~WqPSD~~~~~~~sI~a~~~~~~~~----Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~ 108 (204)
T PF06080_consen 34 SGTGQHAVYFAQALPHL-TWQPSDPDDNLRPSIRAWIAEAGLP----NVRPPLALDVSAPPWPWELPAPLSPESFDAIFC 108 (204)
T ss_pred CCccHHHHHHHHHCCCC-EEcCCCCChHHHhhHHHHHHhcCCc----ccCCCeEeecCCCCCccccccccCCCCcceeee
Confidence 7999999999986 333 2357799999999999998876653 11123444443320000 012347888753
Q ss_pred ------CCCCCCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhc
Q 019408 77 ------DSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQ 150 (341)
Q Consensus 77 ------DPygsp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~ 150 (341)
=|+.....++..|-+.|++||+|++--.=. .-|.++-..-.++...-... ..+.|+|.+- .+.+.|.+.
T Consensus 109 ~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~--~~G~~ts~SN~~FD~sLr~r--dp~~GiRD~e-~v~~lA~~~ 183 (204)
T PF06080_consen 109 INMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFN--RDGKFTSESNAAFDASLRSR--DPEWGIRDIE-DVEALAAAH 183 (204)
T ss_pred hhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcc--cCCEeCCcHHHHHHHHHhcC--CCCcCccCHH-HHHHHHHHC
Confidence 354434456677788999999999732100 01444434444444433222 2478999877 689999999
Q ss_pred CCcEEEEEec
Q 019408 151 GYHVSPLFSY 160 (341)
Q Consensus 151 ~~~i~Pl~s~ 160 (341)
|..++-....
T Consensus 184 GL~l~~~~~M 193 (204)
T PF06080_consen 184 GLELEEDIDM 193 (204)
T ss_pred CCccCccccc
Confidence 8876544433
|
The function of this family is unknown. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.54 E-value=1.2 Score=45.15 Aligned_cols=48 Identities=17% Similarity=0.085 Sum_probs=42.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH 54 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~ 54 (341)
+|||++|+-++.+ ||++|++++.=..-++++++-...|+.. +++++++
T Consensus 75 tGTGLLSmMAvra-gaD~vtA~EvfkPM~d~arkI~~kng~S----dkI~vIn 122 (636)
T KOG1501|consen 75 TGTGLLSMMAVRA-GADSVTACEVFKPMVDLARKIMHKNGMS----DKINVIN 122 (636)
T ss_pred CCccHHHHHHHHh-cCCeEEeehhhchHHHHHHHHHhcCCCc----cceeeec
Confidence 6999999999994 8999999999999999999999989885 5666554
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.34 E-value=33 Score=32.69 Aligned_cols=142 Identities=15% Similarity=0.131 Sum_probs=95.0
Q ss_pred ccccHhHHHHhhh--CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEecc------HHHHHHHhhhcCCcccE
Q 019408 2 CGCGIRSLRYLAE--AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFD------ANRVLSECYLKREFFDL 73 (341)
Q Consensus 2 agsG~rgir~a~e--~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~D------A~~~l~~~~~~~~~fDv 73 (341)
.||+..|-++|++ +.-..|+.+--+.+-++-+.+.++...- .+++++..| +.++..+....+...|+
T Consensus 13 GASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~-----v~v~vi~~DLs~~~~~~~l~~~l~~~~~~Idv 87 (265)
T COG0300 13 GASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTG-----VEVEVIPADLSDPEALERLEDELKERGGPIDV 87 (265)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhC-----ceEEEEECcCCChhHHHHHHHHHHhcCCcccE
Confidence 4788899999886 2235699999999999999999986431 245566665 33444444444457898
Q ss_pred EEeCC-CCCCHHHHH----------------------HHH-Hhcc--cCCEEEEEecCCCCCCCCCchhHHhhhccccCC
Q 019408 74 IDIDS-FGSDSSFLR----------------------TVF-NAVK--RDGLLYLTSTDGYSSGGHRPNNSLASYGAYILP 127 (341)
Q Consensus 74 IdlDP-ygsp~~fld----------------------~al-~~v~--~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~ 127 (341)
.+-.- ||...+|.+ ..+ ..++ .|.+|.|.+. .|..|.....-|+++=
T Consensus 88 LVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~-----ag~~p~p~~avY~ATK-- 160 (265)
T COG0300 88 LVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSA-----AGLIPTPYMAVYSATK-- 160 (265)
T ss_pred EEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEech-----hhcCCCcchHHHHHHH--
Confidence 88887 887667765 111 1233 4667777655 5666666677777654
Q ss_pred CCCchhhhHHHHHHHHHHHHHhcCCcEEEEEecc
Q 019408 128 MPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYY 161 (341)
Q Consensus 128 ~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s~~ 161 (341)
..+--|-..+..+-..+|..+.-+..-.
T Consensus 161 ------a~v~~fSeaL~~EL~~~gV~V~~v~PG~ 188 (265)
T COG0300 161 ------AFVLSFSEALREELKGTGVKVTAVCPGP 188 (265)
T ss_pred ------HHHHHHHHHHHHHhcCCCeEEEEEecCc
Confidence 5666677777777777777776665544
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.12 E-value=5.7 Score=38.19 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=56.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+++|+..|+.+|++.+.+++-.+.+++ .+.+ ..+.....|..+-+.+. ..+..+|+| +|.-|.+
T Consensus 183 ~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~----~~i~~~~~~~~~~l~~~-~~~~~~d~v-id~~g~~ 252 (351)
T cd08233 183 PIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGAT----IVLDPTEVDVVAEVRKL-TGGGGVDVS-FDCAGVQ 252 (351)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC----EEECCCccCHHHHHHHH-hCCCCCCEE-EECCCCH
Confidence 467777888888898889999999988887754 2442 11111223433334333 223348876 5565533
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
..++.++++++++|-+..
T Consensus 253 -~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 253 -ATLDTAIDALRPRGTAVN 270 (351)
T ss_pred -HHHHHHHHhccCCCEEEE
Confidence 567888999999998775
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=85.06 E-value=6.2 Score=38.47 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=55.8
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEec--cHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF--DANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~--DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+.|...+.+|+..|+.+|++.|.+++-.+.+++ .+.+ ..+..... |..+.+.+... + .+|+| +|.-|
T Consensus 197 ~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~----~~i~~~~~~~~~~~~v~~~~~-~-g~d~v-id~~g 265 (368)
T cd08300 197 AVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGAT----DCVNPKDHDKPIQQVLVEMTD-G-GVDYT-FECIG 265 (368)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC----EEEcccccchHHHHHHHHHhC-C-CCcEE-EECCC
Confidence 456667777887898889999999988777654 4442 11111111 34444444322 2 68976 47766
Q ss_pred CCHHHHHHHHHhcccC-CEEEE
Q 019408 81 SDSSFLRTVFNAVKRD-GLLYL 101 (341)
Q Consensus 81 sp~~fld~al~~v~~g-GlL~v 101 (341)
.+ ..++.++++++++ |-+.+
T Consensus 266 ~~-~~~~~a~~~l~~~~G~~v~ 286 (368)
T cd08300 266 NV-KVMRAALEACHKGWGTSVI 286 (368)
T ss_pred Ch-HHHHHHHHhhccCCCeEEE
Confidence 43 5788899999886 87765
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=84.52 E-value=5.1 Score=38.56 Aligned_cols=78 Identities=19% Similarity=0.200 Sum_probs=52.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccE-EEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDL-IDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDv-IdlDPygs 81 (341)
+.|...+..|+..|+ +|++.|.+++-.+++++ .|.+ . ++..+ + ...+.+|+ |+.|+-+
T Consensus 176 ~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~-----~--vi~~~--~------~~~~~~d~~i~~~~~~- 234 (329)
T TIGR02822 176 GSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAA-----S--AGGAY--D------TPPEPLDAAILFAPAG- 234 (329)
T ss_pred HHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCc-----e--ecccc--c------cCcccceEEEECCCcH-
Confidence 456667888887787 48999999888776655 5552 1 22211 0 01235784 5667643
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
..++.+++++++||.+.+..
T Consensus 235 --~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 235 --GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred --HHHHHHHHhhCCCcEEEEEe
Confidence 56788999999999998744
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=83.95 E-value=6.6 Score=39.06 Aligned_cols=90 Identities=13% Similarity=0.146 Sum_probs=57.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe-ccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH-FDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~-~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|...+.+|+..|+..|++.|.+++-.+++++ .+. +.+.... .|..+.+.+. ..+..+|+| +|.-|.
T Consensus 196 ~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga-----~~v~~~~~~~~~~~v~~~-~~~~g~Dvv-id~~G~ 264 (393)
T TIGR02819 196 PVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGC-----ETVDLSKDATLPEQIEQI-LGEPEVDCA-VDCVGF 264 (393)
T ss_pred HHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCC-----eEEecCCcccHHHHHHHH-cCCCCCcEE-EECCCC
Confidence 345566777877899888888999888877765 343 1111111 2333333332 223458855 677776
Q ss_pred CH-------------HHHHHHHHhcccCCEEEEEe
Q 019408 82 DS-------------SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~-------------~fld~al~~v~~gGlL~vt~ 103 (341)
+. .-++.+++++++||-+++-.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 265 EARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred ccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 52 46889999999999999744
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=83.82 E-value=7.4 Score=38.42 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=61.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEec-cHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF-DANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~-DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
.|.|+-+|.-|+-.||.+|+++|++++-.++.++ .|.. +-+..... |+-+.+.+... .--|++ +|-=|
T Consensus 195 GgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT----~~vn~~~~~~vv~~i~~~T~--gG~d~~-~e~~G 263 (366)
T COG1062 195 GGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGAT----HFVNPKEVDDVVEAIVELTD--GGADYA-FECVG 263 (366)
T ss_pred cHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCc----eeecchhhhhHHHHHHHhcC--CCCCEE-EEccC
Confidence 3556666666776899999999999999999877 5552 11111112 56666665532 246766 56656
Q ss_pred CCHHHHHHHHHhcccCCEEEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt 102 (341)
.. .-+++|+.+..++|-..+.
T Consensus 264 ~~-~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 264 NV-EVMRQALEATHRGGTSVII 284 (366)
T ss_pred CH-HHHHHHHHHHhcCCeEEEE
Confidence 54 6789999999999988864
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.76 E-value=1.5 Score=44.92 Aligned_cols=83 Identities=12% Similarity=0.067 Sum_probs=59.3
Q ss_pred CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhh---cCCcccEEEeCCCCC--------CH
Q 019408 15 AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYL---KREFFDLIDIDSFGS--------DS 83 (341)
Q Consensus 15 ~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~---~~~~fDvIdlDPygs--------p~ 83 (341)
.+-.++++++++|++++..+.|..+..- .+..|+-.|...++.+..+ .+..||++.+|==++ |.
T Consensus 317 ~p~~~i~~ve~dP~~l~va~q~f~f~q~-----~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~ 391 (482)
T KOG2352|consen 317 LPKFQITAVEIDPEMLEVATQYFGFMQS-----DRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPP 391 (482)
T ss_pred cCccceeEEEEChhHhhccHhhhchhhh-----hhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCch
Confidence 3556799999999999999999986543 2345677888888887654 456899887763111 45
Q ss_pred HHHH-HHH----HhcccCCEEEEE
Q 019408 84 SFLR-TVF----NAVKRDGLLYLT 102 (341)
Q Consensus 84 ~fld-~al----~~v~~gGlL~vt 102 (341)
.|+. .|+ ..|.+.|+..+-
T Consensus 392 ~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 392 AFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred HHHHHHHHHHHhhccCccceEEEE
Confidence 6664 333 457889998863
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.68 E-value=7.1 Score=37.91 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=56.9
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe-c-cHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH-F-DANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~-~-DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+.|...+.+|+..|+ +|++.+.+++-.+.+++. .+.+ .+.-.. . |..+.+.+.. +..+|+|+ |.-|
T Consensus 170 ~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~---lGa~-----~vi~~~~~~~~~~~i~~~~--~~gvD~v~-d~vG 237 (348)
T PLN03154 170 AVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNK---LGFD-----EAFNYKEEPDLDAALKRYF--PEGIDIYF-DNVG 237 (348)
T ss_pred HHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh---cCCC-----EEEECCCcccHHHHHHHHC--CCCcEEEE-ECCC
Confidence 467777888887787 588899998877776532 3442 221112 2 4444444432 23689775 8877
Q ss_pred CCHHHHHHHHHhcccCCEEEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt 102 (341)
. +.++.++++++++|-+++.
T Consensus 238 ~--~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 238 G--DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred H--HHHHHHHHHhccCCEEEEE
Confidence 4 5778899999999998863
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=83.63 E-value=10 Score=39.42 Aligned_cols=92 Identities=10% Similarity=0.057 Sum_probs=55.4
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEE---------------EeccHHHHHHHh-hhc
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVV---------------THFDANRVLSEC-YLK 67 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v---------------~~~DA~~~l~~~-~~~ 67 (341)
.|..+|..|+..|| .|++.|.+++..+.+++ .|.+ .+.+ ...|..+...+. ...
T Consensus 176 iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes----lGA~-----~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~ 245 (509)
T PRK09424 176 AGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES----MGAE-----FLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQ 245 (509)
T ss_pred HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCe-----EEEeccccccccccchhhhcchhHHHHHHHHHHhc
Confidence 45666777877898 69999999999998877 3331 1111 111211111111 111
Q ss_pred CCcccEEEeCCC--C--CCHHHHHHHHHhcccCCEEEEEecC
Q 019408 68 REFFDLIDIDSF--G--SDSSFLRTVFNAVKRDGLLYLTSTD 105 (341)
Q Consensus 68 ~~~fDvIdlDPy--g--sp~~fld~al~~v~~gGlL~vt~TD 105 (341)
...+|+|+-=-. + .|.-+.+.+++.+++||.+..-+.|
T Consensus 246 ~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 246 AKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAE 287 (509)
T ss_pred cCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccC
Confidence 135898865442 2 2322349999999999999976665
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.58 E-value=7.3 Score=37.87 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=54.9
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe--ccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH--FDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~--~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+.|...++.|+..|+.+|+++|.+++-.+.+++ .+.. .-+.... .+..+.+.+.. +..+|+ ++|--|
T Consensus 198 ~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~~~~~~v~~~~--~~~~d~-vid~~G 266 (369)
T cd08301 198 AVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVT----EFVNPKDHDKPVQEVIAEMT--GGGVDY-SFECTG 266 (369)
T ss_pred HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc----eEEcccccchhHHHHHHHHh--CCCCCE-EEECCC
Confidence 456666778887898889999999988777654 4431 1111111 12223343332 226884 467766
Q ss_pred CCHHHHHHHHHhcccC-CEEEEE
Q 019408 81 SDSSFLRTVFNAVKRD-GLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~g-GlL~vt 102 (341)
.+ ..+..++++++++ |.+++.
T Consensus 267 ~~-~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 267 NI-DAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred Ch-HHHHHHHHHhhcCCCEEEEE
Confidence 43 5778899999996 888763
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=83.20 E-value=7.7 Score=37.13 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=56.8
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe-ccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH-FDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~-~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
|.|...+.+|+..|+ +|++.+.+++-.+.+++.+ +.+ ..+.... .|..+.+.... +..+|+|+ |..|.
T Consensus 163 ~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~l---Ga~----~vi~~~~~~~~~~~i~~~~--~~gvd~v~-d~~g~ 231 (338)
T cd08295 163 AVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKL---GFD----DAFNYKEEPDLDAALKRYF--PNGIDIYF-DNVGG 231 (338)
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhc---CCc----eeEEcCCcccHHHHHHHhC--CCCcEEEE-ECCCH
Confidence 456677888887888 4888888888777776533 331 1111111 14444444432 24689775 88775
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
..+..++++++++|.++.-
T Consensus 232 --~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 232 --KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred --HHHHHHHHHhccCcEEEEe
Confidence 6678899999999998853
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.93 E-value=4.6 Score=38.72 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=55.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC-CCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID-SFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD-Pygs 81 (341)
|||.+-.+.+- .| ++|+++++||.-+.-+.+=++-...+ ++.+|+.+|.... .--.||.++-. ||.-
T Consensus 68 GTGnLT~~lLe-~~-kkVvA~E~Dprmvael~krv~gtp~~----~kLqV~~gD~lK~------d~P~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 68 GTGNLTVKLLE-AG-KKVVAVEIDPRMVAELEKRVQGTPKS----GKLQVLHGDFLKT------DLPRFDGCVSNLPYQI 135 (315)
T ss_pred CCCHHHHHHHH-hc-CeEEEEecCcHHHHHHHHHhcCCCcc----ceeeEEecccccC------CCcccceeeccCCccc
Confidence 89999999874 44 57999999999999999877654443 6789999998742 11368987775 7876
Q ss_pred CHHHHH
Q 019408 82 DSSFLR 87 (341)
Q Consensus 82 p~~fld 87 (341)
.+|++-
T Consensus 136 SSp~vf 141 (315)
T KOG0820|consen 136 SSPLVF 141 (315)
T ss_pred cCHHHH
Confidence 667753
|
|
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.81 E-value=9.2 Score=37.20 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=56.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe-ccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH-FDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~-~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|...+.+|+..|+..|++.|.+++-.+.+++ .+.. .+...+ .+..+.+.... +..+|+| +|--|.
T Consensus 197 ~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~-----~~i~~~~~~~~~~v~~~~--~~~~d~v-ld~~g~ 264 (365)
T cd08278 197 AVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT-----HVINPKEEDLVAAIREIT--GGGVDYA-LDTTGV 264 (365)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc-----EEecCCCcCHHHHHHHHh--CCCCcEE-EECCCC
Confidence 456677788887899889999999887776654 3331 211111 23333344432 3468966 455443
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
+ ..++.+++.++.+|.+....
T Consensus 265 ~-~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 265 P-AVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred c-HHHHHHHHHhccCCEEEEeC
Confidence 3 66788999999999888644
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp | Back alignment and domain information |
|---|
Probab=82.78 E-value=2.5 Score=32.46 Aligned_cols=55 Identities=16% Similarity=0.315 Sum_probs=42.7
Q ss_pred eehhHHHhhcCCCCCCHHHHHHHHHHCCCEEeeeecCCCceecCCCHHH--HHHHHHh
Q 019408 279 IKLDEMASRAKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVA--CIRIAKE 334 (341)
Q Consensus 279 y~~~~l~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~~~~iKTdAp~~~--i~~i~~~ 334 (341)
.+..+||..++++.+-..++++.|.++|+-.|..... .|+.=.-|+++ ++||++.
T Consensus 26 ~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~-GGy~L~~~~~~Itl~dI~~a 82 (83)
T PF02082_consen 26 VSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGRG-GGYRLARPPEEITLLDIVRA 82 (83)
T ss_dssp BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTT-SEEEESS-CCGSBHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCC-CceeecCCHHHCCHHHHHHh
Confidence 8999999999998888999999999999976665443 47777766666 6777764
|
(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C. |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=82.76 E-value=8.4 Score=36.65 Aligned_cols=88 Identities=13% Similarity=0.027 Sum_probs=55.5
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.|+..|+..|++.+.++...+.+++ ++.. ..+.....+..+.+... ..+..+|+|+ |..+.
T Consensus 178 ~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~----~vi~~~~~~~~~~i~~~-~~~~~~d~vl-d~~g~- 246 (347)
T cd05278 178 PVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGAT----DIINPKNGDIVEQILEL-TGGRGVDCVI-EAVGF- 246 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCc----EEEcCCcchHHHHHHHH-cCCCCCcEEE-EccCC-
Confidence 356677888887787678888888877777665 2331 11111223333334332 2235689765 77553
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
...++.+++.++++|.+..
T Consensus 247 ~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 247 EETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred HHHHHHHHHHhhcCCEEEE
Confidence 2578889999999998874
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=82.68 E-value=4.7 Score=36.52 Aligned_cols=139 Identities=14% Similarity=0.116 Sum_probs=78.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||.|.+ +.++.+.....++.+|+|++.+....+ +|+ .|+++|+..-|... ....||+|+|-=
T Consensus 22 CGdG~L-L~~L~~~k~v~g~GvEid~~~v~~cv~----rGv--------~Viq~Dld~gL~~f--~d~sFD~VIlsqtLQ 86 (193)
T PF07021_consen 22 CGDGEL-LAYLKDEKQVDGYGVEIDPDNVAACVA----RGV--------SVIQGDLDEGLADF--PDQSFDYVILSQTLQ 86 (193)
T ss_pred CCchHH-HHHHHHhcCCeEEEEecCHHHHHHHHH----cCC--------CEEECCHHHhHhhC--CCCCccEEehHhHHH
Confidence 455655 355554233468999999998665544 555 47899999999765 356899998754
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEecCCCC--------CCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHh
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTSTDGYS--------SGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASA 149 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~TD~~~--------l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~ 149 (341)
--.|...|+.. ++=|.-..||...-+- +-|..|.+..-=|.= ..|+=-|-..++.|.. -+.+
T Consensus 87 ~~~~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~W--YdTPNih~~Ti~DFe~----lc~~ 157 (193)
T PF07021_consen 87 AVRRPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEW--YDTPNIHLCTIKDFED----LCRE 157 (193)
T ss_pred hHhHHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcc--cCCCCcccccHHHHHH----HHHH
Confidence 11133334443 3445556666654432 246666553322210 1222234556665543 4555
Q ss_pred cCCcEEEEEecccCCCC
Q 019408 150 QGYHVSPLFSYYSYHGP 166 (341)
Q Consensus 150 ~~~~i~Pl~s~~~~~dh 166 (341)
.|..|.=-..+. .++
T Consensus 158 ~~i~I~~~~~~~--~~~ 172 (193)
T PF07021_consen 158 LGIRIEERVFLD--GGR 172 (193)
T ss_pred CCCEEEEEEEEc--CCC
Confidence 666666655555 554
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.63 E-value=8.5 Score=37.61 Aligned_cols=87 Identities=17% Similarity=0.151 Sum_probs=54.0
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe--ccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH--FDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~--~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+.|...+.+|+..|+.+|++.|.+++-.+.+++ .+.. ..+.... .+..+.+.+... + .+|+| +|--|
T Consensus 196 ~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~----~~i~~~~~~~~~~~~v~~~~~-~-g~d~v-id~~G 264 (368)
T TIGR02818 196 GIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGAT----DCVNPNDYDKPIQEVIVEITD-G-GVDYS-FECIG 264 (368)
T ss_pred HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCC----eEEcccccchhHHHHHHHHhC-C-CCCEE-EECCC
Confidence 456667778888899889999999998887755 4442 1111111 122233333322 2 58866 46656
Q ss_pred CCHHHHHHHHHhcccC-CEEEE
Q 019408 81 SDSSFLRTVFNAVKRD-GLLYL 101 (341)
Q Consensus 81 sp~~fld~al~~v~~g-GlL~v 101 (341)
.+ ..++.++++++++ |-+.+
T Consensus 265 ~~-~~~~~~~~~~~~~~G~~v~ 285 (368)
T TIGR02818 265 NV-NVMRAALECCHKGWGESII 285 (368)
T ss_pred CH-HHHHHHHHHhhcCCCeEEE
Confidence 44 5677889999886 87664
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=82.32 E-value=8.2 Score=37.09 Aligned_cols=88 Identities=10% Similarity=0.006 Sum_probs=55.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+..|+..|.+++-.+++++ .+.. .-+.....|....+... ..+..+|+| +|.-|.+
T Consensus 177 ~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~v~~~~~~~~~~i~~~-~~~~~~d~v-ld~~g~~ 246 (351)
T cd08285 177 PVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT----DIVDYKNGDVVEQILKL-TGGKGVDAV-IIAGGGQ 246 (351)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc----eEecCCCCCHHHHHHHH-hCCCCCcEE-EECCCCH
Confidence 356667788887899889999999887777764 3431 11111122333333332 234568965 4665543
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
..+..++++++++|.+..
T Consensus 247 -~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 247 -DTFEQALKVLKPGGTISN 264 (351)
T ss_pred -HHHHHHHHHhhcCCEEEE
Confidence 567889999999998774
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.93 E-value=3.7 Score=37.87 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=59.7
Q ss_pred ccccHhHHHHhhhCCCCE--EEEeeCCHHHHHHHHHHHHHcCC--CC---CCCccEEEEeccHHHHHHHhhhcCCcccEE
Q 019408 2 CGCGIRSLRYLAEAKADF--VMANDGNDAHRRVILGNLKSIER--GS---GDEKRWVVTHFDANRVLSECYLKREFFDLI 74 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~--V~~~Dis~~A~~~i~~N~~~n~~--~~---~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI 74 (341)
||||.++--++.=-|+.- ++.+|.-++.++.-++|++.--- +. -...+..++.+|....-. ...+||-|
T Consensus 91 sGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~----e~a~YDaI 166 (237)
T KOG1661|consen 91 SGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA----EQAPYDAI 166 (237)
T ss_pred CCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC----ccCCcceE
Confidence 688888776663223322 38999999999999999985320 00 001235567888876543 34689999
Q ss_pred EeCCCCCCHHHHHHHHHhcccCCEEEE
Q 019408 75 DIDSFGSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 75 dlDPygsp~~fld~al~~v~~gGlL~v 101 (341)
.+-- .++..-+.-+..|++||-|.|
T Consensus 167 hvGA--aa~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 167 HVGA--AASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred EEcc--CccccHHHHHHhhccCCeEEE
Confidence 9974 111333444566788777775
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.55 E-value=2.6 Score=36.00 Aligned_cols=70 Identities=16% Similarity=-0.047 Sum_probs=41.1
Q ss_pred cccH-hHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEE-eCCCC
Q 019408 3 GCGI-RSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLID-IDSFG 80 (341)
Q Consensus 3 gsG~-rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvId-lDPyg 80 (341)
|+|. .+...+ +.|. .|+++|+|+.+++.+++|. + .++..|.++-=-+.. +.+|+|. +=|
T Consensus 26 GfG~~vA~~L~-~~G~-~ViaIDi~~~aV~~a~~~~----~--------~~v~dDlf~p~~~~y---~~a~liysirp-- 86 (134)
T PRK04148 26 GFYFKVAKKLK-ESGF-DVIVIDINEKAVEKAKKLG----L--------NAFVDDLFNPNLEIY---KNAKLIYSIRP-- 86 (134)
T ss_pred cCCHHHHHHHH-HCCC-EEEEEECCHHHHHHHHHhC----C--------eEEECcCCCCCHHHH---hcCCEEEEeCC--
Confidence 4453 444444 3564 7999999999998887752 2 355666664322221 2578885 456
Q ss_pred CCHHHHHHHHHh
Q 019408 81 SDSSFLRTVFNA 92 (341)
Q Consensus 81 sp~~fld~al~~ 92 (341)
|.+.....+++
T Consensus 87 -p~el~~~~~~l 97 (134)
T PRK04148 87 -PRDLQPFILEL 97 (134)
T ss_pred -CHHHHHHHHHH
Confidence 54444444443
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=80.49 E-value=9.3 Score=35.99 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=55.0
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...++.|+..|+. |++.+.+++-.+.+++ .++. ..+.....+....+ .. ..+..+|+| +|.-|.
T Consensus 176 ~vG~~~~~la~~~G~~-V~~~~~s~~~~~~~~~----~g~~----~~~~~~~~~~~~~~-~~-~~~~~~D~v-id~~g~- 242 (338)
T cd08254 176 GLGLNAVQIAKAMGAA-VIAVDIKEEKLELAKE----LGAD----EVLNSLDDSPKDKK-AA-GLGGGFDVI-FDFVGT- 242 (338)
T ss_pred HHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHH----hCCC----EEEcCCCcCHHHHH-HH-hcCCCceEE-EECCCC-
Confidence 3567778888877765 8999999887777654 3431 11111122333333 22 234568965 566443
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
...++.+++.++++|.+....
T Consensus 243 ~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 243 QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred HHHHHHHHHHhhcCCEEEEEC
Confidence 267888999999999988643
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=80.44 E-value=18 Score=30.25 Aligned_cols=71 Identities=10% Similarity=0.074 Sum_probs=45.9
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCC--HHHHHHHHHHHHHcCCCCCCCccEEEEecc------HHHHHHHhhhcCCc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGN--DAHRRVILGNLKSIERGSGDEKRWVVTHFD------ANRVLSECYLKREF 70 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis--~~A~~~i~~N~~~n~~~~~~~~~~~v~~~D------A~~~l~~~~~~~~~ 70 (341)
.|||..|...+.. .|+..|+..+.+ .+..+-+...++..+ .++.+++.| ...++.+.......
T Consensus 7 Ga~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 7 GASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG------AKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp TTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT------SEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc------ccccccccccccccccccccccccccccc
Confidence 5788888877664 578899999998 555555555555333 356666655 34445554444457
Q ss_pred ccEEEeCC
Q 019408 71 FDLIDIDS 78 (341)
Q Consensus 71 fDvIdlDP 78 (341)
.|+++.-.
T Consensus 81 ld~li~~a 88 (167)
T PF00106_consen 81 LDILINNA 88 (167)
T ss_dssp ESEEEEEC
T ss_pred cccccccc
Confidence 89887655
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.31 E-value=12 Score=36.37 Aligned_cols=87 Identities=13% Similarity=0.107 Sum_probs=54.2
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEec---cHHHHHHHhhhcCCcccEEEeCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF---DANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~---DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+.|...++.|+..|+.+|+++|.+++-.+.+++ .+.. .+..... +..+.+.+... ..+|+|+ |.-
T Consensus 195 ~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~-----~~i~~~~~~~~~~~~~~~~~~--~g~d~vi-d~~ 262 (365)
T cd08277 195 AVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGAT-----DFINPKDSDKPVSEVIREMTG--GGVDYSF-ECT 262 (365)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC-----cEeccccccchHHHHHHHHhC--CCCCEEE-ECC
Confidence 345566777887898889999999888777754 3431 1111111 22333333322 3689765 665
Q ss_pred CCCHHHHHHHHHhcccC-CEEEEE
Q 019408 80 GSDSSFLRTVFNAVKRD-GLLYLT 102 (341)
Q Consensus 80 gsp~~fld~al~~v~~g-GlL~vt 102 (341)
|.+ ..++.+++.++++ |-+.+.
T Consensus 263 g~~-~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 263 GNA-DLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred CCh-HHHHHHHHhcccCCCEEEEE
Confidence 543 6788899999875 777753
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 341 | ||||
| 2dul_A | 378 | Crystal Structure Of Trna G26 Methyltransferase Trm | 7e-23 | ||
| 3axs_A | 392 | Complex Structure Of Trna Methyltransferase Trm1 Fr | 4e-17 |
| >pdb|2DUL|A Chain A, Crystal Structure Of Trna G26 Methyltransferase Trm1 In Apo Form From Pyrococcus Horikoshii Length = 378 | Back alignment and structure |
|
| >pdb|3AXS|A Chain A, Complex Structure Of Trna Methyltransferase Trm1 From Aquifex Aeolicus With Sinefungin Length = 392 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 341 | |||
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 6e-76 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 4e-68 |
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* Length = 378 | Back alignment and structure |
|---|
Score = 237 bits (605), Expect = 6e-76
Identities = 91/348 (26%), Positives = 147/348 (42%), Gaps = 37/348 (10%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLK----------SIERGSGDEKRW 50
+ GIR +R+ E A+ V ND ++ ++ N+ EK
Sbjct: 55 LSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTI 114
Query: 51 VVTHFDANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSG 110
V+ H DANR + +F ID+D FGS FL T + KR G+L +T+TDG
Sbjct: 115 VINHDDANR---LMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATDGAPLC 171
Query: 111 GHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRV 170
G P L Y A L +E+G R+L+G R A+ + + +YY H FR
Sbjct: 172 GAHPRACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKYDLGIDVILAYYKDH--YFRA 229
Query: 171 MLRVHRKALPDNR---HYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPL 227
+++ A + G+I + + G + P + GP+
Sbjct: 230 FVKLKDGARKGDETLEKLGYIYFDDKTGKFELEQGF------LP-------TRPNAYGPV 276
Query: 228 WTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASR 287
W GPL D ++KM+ AE KLL + E D L + + R
Sbjct: 277 WLGPLKDEKIVSKMVKEAESLSLA---RKKQALKLLKMIDQELDIPL---FYDTHAIGRR 330
Query: 288 AKMNSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKEL 335
K+ + ++ ++SA++++GY A+R+H + IKT+ P I K +
Sbjct: 331 LKIETKKVEEIISALREQGYEATRTHFSPTGIKTSAPYEVFIETIKRI 378
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* Length = 392 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 4e-68
Identities = 78/340 (22%), Positives = 149/340 (43%), Gaps = 24/340 (7%)
Query: 1 MCGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR 59
+ GIR++R+L E + AND + ++ N + + E R+ + +AN
Sbjct: 60 LSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKEN---FKLNNIPEDRYEIHGMEANF 116
Query: 60 VLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLA 119
L + + FD +D+D FG+ F+ +V ++KR G+L LT+TD G P +
Sbjct: 117 FLRKEWGFG--FDYVDLDPFGTPVPFIESVALSMKRGGILSLTATDTAPLSGTYPKTCMR 174
Query: 120 SYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKAL 179
Y A L + +E+G+R+LI + A+ + P+F+Y H F++ R
Sbjct: 175 RYMARPLRNEFKHEVGIRILIKKVIELAAQYDIAMIPIFAYSHLH--YFKLFFVKERGVE 232
Query: 180 PDNR---HYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTGPLHDAT 236
++ +G+I YC +C N + + + CP S + GPLW G L D
Sbjct: 233 KVDKLIEQFGYIQYCFNCMNREVVTDLYKFKEKCPHCG----SKFHIGGPLWIGKLWDEE 288
Query: 237 HITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLK 296
+ A+K + +++L + +ES + + L ++A + K+ +
Sbjct: 289 FTNFLYEEAQKREE----IEKETKRILKLIKEESQLQTVG-FYVLSKLAEKVKLPAQP-- 341
Query: 297 TMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAKELQ 336
+ + + R+H + +TN ++ +EL+
Sbjct: 342 --PIRIAVKFFNGVRTHFVGDGFRTNLSFEEVMKKMEELK 379
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 341 | |||
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 100.0 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 100.0 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.59 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.58 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.55 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.54 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.49 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.47 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.46 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.4 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.31 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.24 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 99.2 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.19 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.16 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.16 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.13 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.09 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.08 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.03 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.02 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.97 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.92 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.89 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.89 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.88 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.87 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.86 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.85 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.84 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.84 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.82 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.81 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.8 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 98.8 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.8 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.79 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 98.79 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.77 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 98.77 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.76 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.75 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.75 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.74 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.74 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.73 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.73 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.73 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.72 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.72 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.72 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.7 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 98.7 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.7 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.68 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.68 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.68 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.67 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.66 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.64 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.64 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.64 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 98.63 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.63 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.61 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.6 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.6 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.59 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.58 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.58 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 98.58 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.57 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.56 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.56 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.54 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.54 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.54 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.54 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.53 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.53 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.52 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.52 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.52 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.51 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.51 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.5 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.5 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.49 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.49 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.49 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.49 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.46 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.44 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.44 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.44 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.43 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.42 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.42 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.41 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.4 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.4 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.38 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.37 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.36 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.35 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.33 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.32 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.31 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.31 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.3 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.28 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.28 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.27 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.27 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 98.25 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 98.25 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.24 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.24 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.23 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.23 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.23 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.22 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.22 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 98.21 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.21 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.2 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.19 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.18 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.18 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.17 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.17 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.17 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.14 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.14 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.13 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.1 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.08 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.07 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.07 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.07 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.06 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.05 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.04 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.04 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.04 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.04 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 98.03 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.01 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 97.99 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 97.99 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 97.98 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 97.96 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 97.96 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 97.95 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.95 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 97.94 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 97.94 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 97.94 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 97.94 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 97.93 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 97.92 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 97.92 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 97.91 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 97.9 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 97.9 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 97.9 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 97.89 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 97.89 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 97.88 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.87 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 97.86 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 97.86 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 97.86 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 97.86 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 97.85 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 97.85 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 97.83 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 97.81 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 97.79 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 97.77 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 97.77 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 97.76 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 97.75 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.75 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 97.72 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 97.7 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.66 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 97.66 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 97.66 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 97.65 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 97.64 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 97.64 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 97.63 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.62 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 97.61 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 97.61 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 97.61 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 97.61 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 97.6 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 97.59 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 97.58 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 97.58 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 97.58 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 97.55 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 97.55 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 97.55 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 97.55 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 97.52 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 97.52 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 97.49 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 97.47 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.45 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 97.43 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 97.43 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 97.41 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 97.4 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 97.4 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 97.39 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 97.38 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 97.37 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 97.36 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 97.35 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.31 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 97.31 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.28 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 97.27 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 97.2 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 97.19 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 97.17 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 97.16 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 97.13 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 97.08 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 97.08 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 97.08 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 97.05 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.03 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 96.98 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 96.96 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 96.94 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 96.94 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 96.93 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 96.92 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 96.9 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.88 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 96.87 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 96.84 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 96.77 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 96.77 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 96.76 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 96.76 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 96.75 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 96.72 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 96.71 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 96.7 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 96.55 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 96.53 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 96.52 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 96.46 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.4 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.39 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 96.38 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 96.36 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 96.34 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 96.29 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.25 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 96.23 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 96.18 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.14 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.05 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 95.79 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 95.71 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 95.71 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 95.58 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 95.54 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.43 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 95.42 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 95.42 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.28 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.7 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.54 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.53 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 94.36 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.32 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.26 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.24 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 94.19 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.16 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 94.13 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.1 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.01 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 93.96 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 93.94 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.83 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 93.8 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 93.8 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 93.76 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 93.72 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.67 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 93.49 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.07 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 93.07 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.03 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 92.97 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 92.96 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 92.96 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 92.93 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 92.9 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 92.88 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 92.87 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 92.84 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 92.79 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 92.54 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 92.49 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 92.44 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 92.1 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 91.88 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 91.7 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 91.65 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 91.42 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 91.39 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 91.3 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 91.27 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 91.19 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 91.18 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 90.94 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 90.9 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 90.48 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 90.34 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 89.81 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 89.74 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 89.66 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 89.61 | |
| 3hzh_A | 157 | Chemotaxis response regulator (CHEY-3); phosphatas | 89.08 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 89.07 | |
| 3cu5_A | 141 | Two component transcriptional regulator, ARAC FAM; | 88.85 | |
| 3heb_A | 152 | Response regulator receiver domain protein (CHEY); | 88.83 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 88.81 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 88.61 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 88.29 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 88.08 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 88.0 | |
| 3jte_A | 143 | Response regulator receiver protein; structural ge | 87.55 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 87.44 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 87.27 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 87.19 | |
| 3h5i_A | 140 | Response regulator/sensory box protein/ggdef domai | 86.72 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 86.69 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 86.64 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 86.38 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 85.92 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 85.67 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 85.66 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 85.55 | |
| 3eod_A | 130 | Protein HNR; response regulator, phosphoprotein, t | 85.27 | |
| 3cg4_A | 142 | Response regulator receiver domain protein (CHEY-; | 85.24 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 85.19 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 85.16 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 85.07 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 84.71 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 84.44 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 84.34 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 83.98 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 83.82 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 83.59 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 83.53 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 83.51 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 83.05 | |
| 1tmy_A | 120 | CHEY protein, TMY; chemotaxis, phosphoryl transfer | 82.98 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 82.82 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 82.34 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 82.04 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 81.75 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 81.63 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 81.57 | |
| 2qxy_A | 142 | Response regulator; regulation of transcription, N | 81.16 | |
| 3rqi_A | 184 | Response regulator protein; structural genomics, s | 80.76 | |
| 3cg0_A | 140 | Response regulator receiver modulated diguanylate | 80.74 | |
| 4e7p_A | 150 | Response regulator; DNA binding, cytosol, transcri | 80.63 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 80.56 | |
| 3eul_A | 152 | Possible nitrate/nitrite response transcriptional | 80.51 | |
| 1ys7_A | 233 | Transcriptional regulatory protein PRRA; response | 80.5 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 80.44 | |
| 3i42_A | 127 | Response regulator receiver domain protein (CHEY- | 80.36 |
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-78 Score=593.22 Aligned_cols=315 Identities=25% Similarity=0.439 Sum_probs=286.3
Q ss_pred CccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCcc-EEEEeccHHHHHH-HhhhcCCcccEEEeC
Q 019408 1 MCGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKR-WVVTHFDANRVLS-ECYLKREFFDLIDID 77 (341)
Q Consensus 1 fagsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~-~~v~~~DA~~~l~-~~~~~~~~fDvIdlD 77 (341)
|||||++||++|++ +||.+|++||+|+.|++.+++|+++|+++ ++ ++++++||+++|. .. +++||+|++|
T Consensus 60 faGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~----~~~v~v~~~Da~~~l~~~~---~~~fD~V~lD 132 (392)
T 3axs_A 60 LSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP----EDRYEIHGMEANFFLRKEW---GFGFDYVDLD 132 (392)
T ss_dssp SCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC----GGGEEEECSCHHHHHHSCC---SSCEEEEEEC
T ss_pred CCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC----CceEEEEeCCHHHHHHHhh---CCCCcEEEEC
Confidence 79999999999997 57899999999999999999999999985 45 8999999999987 54 3579999999
Q ss_pred CCCCCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEE
Q 019408 78 SFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPL 157 (341)
Q Consensus 78 Pygsp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl 157 (341)
|||++.+|++.|+++|++||+|++|+||+++|||+.+..++|+||..|.+.+++||.++|++|..++++|+++++.|+|+
T Consensus 133 P~g~~~~~l~~a~~~Lk~gGll~~t~t~~~~l~g~~~~~~~rkYg~~p~r~~~~~e~~~r~~L~~~~~~a~~~~~~i~P~ 212 (392)
T 3axs_A 133 PFGTPVPFIESVALSMKRGGILSLTATDTAPLSGTYPKTCMRRYMARPLRNEFKHEVGIRILIKKVIELAAQYDIAMIPI 212 (392)
T ss_dssp CSSCCHHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHHHSSBCCCSTTHHHHHHHHHHHHHHHHHHTTTEEEEEE
T ss_pred CCcCHHHHHHHHHHHhCCCCEEEEEecchhhhccccHHHHHHHhCCcccccccccchhHHHHHHHHHHhcccCCCeEEee
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCeEEEEEEEEeCccc---ccccceeEEEcCCCCCcccccccccCCCCC-CCCCCCCCCcceeeccccccCCC
Q 019408 158 FSYYSYHGPVFRVMLRVHRKALP---DNRHYGFISYCNHCGNSQAYSWEELGQMSC-PCSNTIGSSSLVVSGPLWTGPLH 233 (341)
Q Consensus 158 ~s~~~~~dhy~Rv~vrv~~~~~~---~~~~~g~v~~C~~C~~~~~~~~~~~~~~~C-~c~~~~~~~~~~~~GPlW~G~lh 233 (341)
++++ .|||+||||||.+|+.+ +.+++||++||++|++++.+.........| .|++ +++++||||+||||
T Consensus 213 l~~~--~~~y~Rv~vrv~~~~~~~~~~~~~~g~v~~C~~C~~~~~~~~~~~~~~~C~~cg~-----~~~~~GPlW~g~l~ 285 (392)
T 3axs_A 213 FAYS--HLHYFKLFFVKERGVEKVDKLIEQFGYIQYCFNCMNREVVTDLYKFKEKCPHCGS-----KFHIGGPLWIGKLW 285 (392)
T ss_dssp EEEE--ETTEEEEEEEEEECHHHHHHHHTTEEEEEECTTTCCEEEECCGGGCCSBCTTTCS-----BCEEEEEEECSCSC
T ss_pred EEEE--eCcEEEEEEEEecCHHHHHHHHHhcceEEECCCCCCeEeecCCCCCCCcCCCCCC-----ccceecccccCcCC
Confidence 9999 99999999999999876 467899999999999998743111123567 4655 99999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHhhcccCCCCCCc-ceehhHHHhhcCCCCC-CHHHHHHHHHHCCCEEee
Q 019408 234 DATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFG-YIKLDEMASRAKMNSP-SLKTMMSAVQKEGYVASR 311 (341)
Q Consensus 234 d~~fv~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~e~~~~~pp~-yy~~~~l~~~~k~~~p-~~~~~~~~L~~~Gy~as~ 311 (341)
|++||++|++.+++..|.+ .++.+||+.+.+|. +.|++ ||++|+||+++|+++| |+++++ +||+|||
T Consensus 286 d~~fv~~~l~~~~~~~~~~----~~~~~lL~~~~~E~--~~p~~~~y~~~~l~~~~~~~~p~~~~~~~-----~Gy~~s~ 354 (392)
T 3axs_A 286 DEEFTNFLYEEAQKREEIE----KETKRILKLIKEES--QLQTVGFYVLSKLAEKVKLPAQPPIRIAV-----KFFNGVR 354 (392)
T ss_dssp CHHHHHHHHHHHHTCTTSC----HHHHHHHHHHHHHH--TSCCSSCEEHHHHHHHHTCSCCCCHHHHH-----HHTTCEE
T ss_pred CHHHHHHHHHHhhhcccch----HHHHHHHHHHHHHh--cCCccceEcHHHHHHHcCCCCCCCHHHHh-----cCcEEEe
Confidence 9999999999998776643 57999999999885 45522 9999999999999999 999988 9999999
Q ss_pred eecCCCceecCCCHHHHHHHHHhhhhhcc
Q 019408 312 SHIASNAIKTNCPMVACIRIAKELQGCQK 340 (341)
Q Consensus 312 tH~~~~~iKTdAp~~~i~~i~~~~~~~~~ 340 (341)
||++|+|||||||+++||+|+++|...|+
T Consensus 355 tH~~p~~iKTdAp~~~i~~i~~~~~~~~~ 383 (392)
T 3axs_A 355 THFVGDGFRTNLSFEEVMKKMEELKEKQK 383 (392)
T ss_dssp CTTSTTEEECSSCHHHHHHHHHHHHHHHH
T ss_pred eccCCCcEeccCCHHHHHHHHHHHHHhch
Confidence 99999999999999999999999987665
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-71 Score=547.30 Aligned_cols=306 Identities=28% Similarity=0.470 Sum_probs=278.5
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc---------------CCCCCCCccEEEEeccHHHHHHHhh
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI---------------ERGSGDEKRWVVTHFDANRVLSECY 65 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n---------------~~~~~~~~~~~v~~~DA~~~l~~~~ 65 (341)
|||||++||+++++.++.+|++||+|++|++++++|+++| +++ .++++++|+++++...
T Consensus 55 ~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-----~i~v~~~Da~~~~~~~- 128 (378)
T 2dul_A 55 LSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-----TIVINHDDANRLMAER- 128 (378)
T ss_dssp SCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-----EEEEEESCHHHHHHHS-
T ss_pred CCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-----ceEEEcCcHHHHHHhc-
Confidence 6999999999999757778999999999999999999999 773 4889999999998754
Q ss_pred hcCCcccEEEeCCCCCCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHH
Q 019408 66 LKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVR 145 (341)
Q Consensus 66 ~~~~~fDvIdlDPygsp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~ 145 (341)
.++||+|++|||+++.+|++.|++.+++||+|++|+||.+++|+.++..++++||..|.+.+++||.++|+++..+++
T Consensus 129 --~~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~td~~~l~~~~~~~~~~~yg~~p~~~~~~~e~~~ri~l~~~~~ 206 (378)
T 2dul_A 129 --HRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATDGAPLCGAHPRACLRKYLAVPLRGELCHEVGTRILVGVIAR 206 (378)
T ss_dssp --TTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHHHSSBCCCSTTHHHHHHHHHHHHHHH
T ss_pred --cCCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEEeecchhhccccHHHHHHHccCCCcccccccchhHHHHHHHHHH
Confidence 347999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEEecccCCCCeEEEEEEEEeCccc---ccccceeEEEcCCCCCcccccccccCCCCCCCCCCCCCCcce
Q 019408 146 EASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKALP---DNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLV 222 (341)
Q Consensus 146 ~Aa~~~~~i~Pl~s~~~~~dhy~Rv~vrv~~~~~~---~~~~~g~v~~C~~C~~~~~~~~~~~~~~~C~c~~~~~~~~~~ 222 (341)
.|+++++.|.|+++++ .+||+|+++||.+|+.. +.+++||++||++|++++.++ +. .+.|.. .
T Consensus 207 ~~~~~g~~i~P~~~~~--~~~y~rv~vrv~~g~~~~~~~~~~~g~v~~C~~c~~~~~~~--~~---~~~~~~-----~-- 272 (378)
T 2dul_A 207 YAAKYDLGIDVILAYY--KDHYFRAFVKLKDGARKGDETLEKLGYIYFDDKTGKFELEQ--GF---LPTRPN-----A-- 272 (378)
T ss_dssp HHHTTTEEEEEEEEEE--ETTEEEEEEEEEESHHHHHHHHTTEEEEEECTTTCCEEEEE--SS---SCCSSS-----C--
T ss_pred hcCcCCcEEEEEEEEe--cCCEEEEEEEEecCHHHHHHHHHhcceEEECCCCCCEEeec--cc---CCCCCC-----C--
Confidence 9999999999999999 99999999999999876 457899999999999999875 11 222332 2
Q ss_pred eeccccccCCCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHH
Q 019408 223 VSGPLWTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAV 302 (341)
Q Consensus 223 ~~GPlW~G~lhd~~fv~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L 302 (341)
+||||+|||||++||++|++.+++..|. +..|+.+||+.+.+| .+. |+||++|+||+++|+++||+++|+++|
T Consensus 273 -~GPlw~g~l~d~~f~~~~l~~~~~~~~~---~~~~~~~ll~~~~~E--~~~-p~~y~~~~~~~~~~~~~p~~~~~~~~L 345 (378)
T 2dul_A 273 -YGPVWLGPLKDEKIVSKMVKEAESLSLA---RKKQALKLLKMIDQE--LDI-PLFYDTHAIGRRLKIETKKVEEIISAL 345 (378)
T ss_dssp -EEEEECSCSBCHHHHHHHHHHHHTSCCT---THHHHHHHHHHHHHS--CCS-SCCEEHHHHHHHHTCCBCCHHHHHHHH
T ss_pred -cCCCccCCCCCHHHHHHHHHHhhhcccc---hHHHHHHHHHHHHHh--cCC-CcEEeHHHHHHHcCCCCCCHHHHHHHH
Confidence 9999999999999999999998777664 345799999999988 445 579999999999999999999999999
Q ss_pred HHCCCEEeeeecCCCceecCCCHHHHHHHHHhh
Q 019408 303 QKEGYVASRSHIASNAIKTNCPMVACIRIAKEL 335 (341)
Q Consensus 303 ~~~Gy~as~tH~~~~~iKTdAp~~~i~~i~~~~ 335 (341)
+++||+||||||+|+|||||||+++||+|+|++
T Consensus 346 ~~~Gy~~s~tH~~p~~ikTdAp~~~i~~i~~~~ 378 (378)
T 2dul_A 346 REQGYEATRTHFSPTGIKTSAPYEVFIETIKRI 378 (378)
T ss_dssp HHTTCCEEEETTEEEEEEESSCHHHHHHHHBC-
T ss_pred HHCCCEEEeeecCCCcEecCCCHHHHHHHHhhC
Confidence 999999999999999999999999999999863
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=142.26 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=82.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
|||+|.+||.+|+ .|+.+|+++|+||.|++.+++|+++|+++ ++++++++|+++++. ...||.|++||..
T Consensus 133 ~aG~G~~~i~~a~-~g~~~V~avD~np~a~~~~~~N~~~N~v~----~~v~~~~~D~~~~~~-----~~~~D~Vi~~~p~ 202 (278)
T 3k6r_A 133 FAGIGHLSLPIAV-YGKAKVIAIEKDPYTFKFLVENIHLNKVE----DRMSAYNMDNRDFPG-----ENIADRILMGYVV 202 (278)
T ss_dssp TCTTTTTTHHHHH-HTCCEEEEECCCHHHHHHHHHHHHHTTCT----TTEEEECSCTTTCCC-----CSCEEEEEECCCS
T ss_pred cCcCcHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEeCcHHHhcc-----ccCCCEEEECCCC
Confidence 7999999999999 58889999999999999999999999995 679999999987643 3579999999855
Q ss_pred CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~ 103 (341)
++.+|++.|++++++||+|.+..
T Consensus 203 ~~~~~l~~a~~~lk~gG~ih~~~ 225 (278)
T 3k6r_A 203 RTHEFIPKALSIAKDGAIIHYHN 225 (278)
T ss_dssp SGGGGHHHHHHHEEEEEEEEEEE
T ss_pred cHHHHHHHHHHHcCCCCEEEEEe
Confidence 56799999999999999998643
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=142.25 Aligned_cols=135 Identities=11% Similarity=0.027 Sum_probs=108.5
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCc-cEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEK-RWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~-~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
+||||.+++.+|+ .|+.+|+++|+|+.+++.+++|++.|++. . +++++++|+.+++......+.+||+|++||
T Consensus 220 ~cGtG~~sl~la~-~ga~~V~~vD~s~~al~~A~~N~~~n~~~----~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP 294 (385)
T 2b78_A 220 FSYTAAFSVAAAM-GGAMATTSVDLAKRSRALSLAHFEANHLD----MANHQLVVMDVFDYFKYARRHHLTYDIIIIDPP 294 (385)
T ss_dssp TCTTTHHHHHHHH-TTBSEEEEEESCTTHHHHHHHHHHHTTCC----CTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eeccCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECCHHHHHHHHHHhCCCccEEEECCC
Confidence 6999999999998 68889999999999999999999999984 3 689999999999876544456899999999
Q ss_pred C-CC----C-------HHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHH
Q 019408 79 F-GS----D-------SSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVRE 146 (341)
Q Consensus 79 y-gs----p-------~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~ 146 (341)
+ +. . ..++..+.+.|++||+|++++ |.. .+....+...+..+
T Consensus 295 ~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~------~~~--------------------~~~~~~~~~~i~~~ 348 (385)
T 2b78_A 295 SFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST------NAA--------------------NMTVSQFKKQIEKG 348 (385)
T ss_dssp CC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE------CCT--------------------TSCHHHHHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEe------CCC--------------------cCCHHHHHHHHHHH
Confidence 3 21 1 124557789999999999854 322 24556788888888
Q ss_pred HHhcCCcEEEEEecccCCCCeE
Q 019408 147 ASAQGYHVSPLFSYYSYHGPVF 168 (341)
Q Consensus 147 Aa~~~~~i~Pl~s~~~~~dhy~ 168 (341)
+.+.++. .+-...||.||++
T Consensus 349 ~~~~g~~--~~~~~~~~~D~p~ 368 (385)
T 2b78_A 349 FGKQKHT--YLDLQQLPSDFAV 368 (385)
T ss_dssp HTTCCCE--EEEEECCCTTSCC
T ss_pred HHHcCCc--EEEeCCCCCCCCC
Confidence 9899888 5666777799986
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-14 Score=139.76 Aligned_cols=132 Identities=18% Similarity=0.151 Sum_probs=108.6
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
|||||.+++.+|. .|+. |+++|+|+.+++.+++|++.|++. . ++.++|+++++... .+. ||+|++||
T Consensus 222 g~GtG~~sl~~a~-~ga~-V~avDis~~al~~a~~n~~~ng~~----~--~~~~~D~~~~l~~~--~~~-fD~Ii~dpP~ 290 (393)
T 4dmg_A 222 YSYVGGFALRAAR-KGAY-ALAVDKDLEALGVLDQAALRLGLR----V--DIRHGEALPTLRGL--EGP-FHHVLLDPPT 290 (393)
T ss_dssp SCTTTHHHHHHHH-TTCE-EEEEESCHHHHHHHHHHHHHHTCC----C--EEEESCHHHHHHTC--CCC-EEEEEECCCC
T ss_pred ccchhHHHHHHHH-cCCe-EEEEECCHHHHHHHHHHHHHhCCC----C--cEEEccHHHHHHHh--cCC-CCEEEECCCc
Confidence 6999999999998 5887 999999999999999999999984 2 45699999998754 234 99999999
Q ss_pred CCCC-----------HHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHH
Q 019408 79 FGSD-----------SSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREA 147 (341)
Q Consensus 79 ygsp-----------~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~A 147 (341)
|... ..++..+++.|++||+|.+ +| |... +....+...+.+++
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~-~s-----~s~~--------------------~~~~~f~~~v~~a~ 344 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWL-SS-----CSYH--------------------LRLEDLLEVARRAA 344 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEE-EE-----CCTT--------------------SCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE-EE-----CCCC--------------------CCHHHHHHHHHHHH
Confidence 2210 2677889999999999985 44 5332 44556888889999
Q ss_pred HhcCCcEEEEEecccCCCCeEE
Q 019408 148 SAQGYHVSPLFSYYSYHGPVFR 169 (341)
Q Consensus 148 a~~~~~i~Pl~s~~~~~dhy~R 169 (341)
.+.++.++.+-...|+.||++.
T Consensus 345 ~~~g~~~~i~~~~~~~~DhP~~ 366 (393)
T 4dmg_A 345 ADLGRRLRVHRVTYQPEDHPWS 366 (393)
T ss_dssp HHHTCCEEEEEEEECCTTSCEE
T ss_pred HHhCCeEEEEEEcCCCCCCCcC
Confidence 9999999999999999999864
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.6e-14 Score=136.82 Aligned_cols=138 Identities=13% Similarity=0.033 Sum_probs=112.9
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCC-CCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIER-GSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~-~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
+||+|.+++.+++ .|+.+|+++|+|+.+++.+++|++.|++ . ++++++++|+.+++......+.+||+|++||
T Consensus 228 ~cG~G~~sl~la~-~g~~~V~~vD~s~~al~~a~~n~~~ngl~~----~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP 302 (396)
T 3c0k_A 228 FSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNKLDL----SKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPP 302 (396)
T ss_dssp SCTTCSHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCG----GGEEEEESCHHHHHHHHHHTTCCEEEEEECCS
T ss_pred eccCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCc----cceEEEECCHHHHHHHHHhcCCCCCEEEECCC
Confidence 6999999999998 5888999999999999999999999987 4 4789999999999876544456899999999
Q ss_pred C-CC-----------CHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHH
Q 019408 79 F-GS-----------DSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVRE 146 (341)
Q Consensus 79 y-gs-----------p~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~ 146 (341)
+ +. ...++..+++.+++||+|++++ |... +....+...+.++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~------~~~~--------------------~~~~~~~~~i~~~ 356 (396)
T 3c0k_A 303 KFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFS------CSGL--------------------MTSDLFQKIIADA 356 (396)
T ss_dssp STTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEE------CCTT--------------------CCHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe------CCCc--------------------CCHHHHHHHHHHH
Confidence 3 21 1356778999999999999844 4321 3334567778888
Q ss_pred HHhcCCcEEEEEecccCCCCeEE
Q 019408 147 ASAQGYHVSPLFSYYSYHGPVFR 169 (341)
Q Consensus 147 Aa~~~~~i~Pl~s~~~~~dhy~R 169 (341)
+.+.|+.++.+-...++.||++.
T Consensus 357 ~~~~g~~~~~i~~~~~~~d~p~~ 379 (396)
T 3c0k_A 357 AIDAGRDVQFIEQFRQAADHPVI 379 (396)
T ss_dssp HHHHTCCEEEEEEEECCTTSCEE
T ss_pred HHHcCCeEEEEEECCCCCCCCCC
Confidence 99999999999888888998753
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=134.37 Aligned_cols=137 Identities=19% Similarity=0.087 Sum_probs=109.5
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
+||+|.+++.++. .|+.+|+++|+|+.+++.+++|++.|++. .+++++++|+.+++......+.+||+|++||
T Consensus 225 ~~G~G~~~~~la~-~g~~~v~~vD~s~~~l~~a~~n~~~n~~~----~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~ 299 (396)
T 2as0_A 225 FTYTGGFAIHAAI-AGADEVIGIDKSPRAIETAKENAKLNGVE----DRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPA 299 (396)
T ss_dssp TCTTTHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCG----GGEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred cCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEECCHHHHHHHHHhhCCCCCEEEECCCC
Confidence 6999999999998 58889999999999999999999999983 3789999999998876544456899999999
Q ss_pred CCC-----------CHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHH
Q 019408 79 FGS-----------DSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREA 147 (341)
Q Consensus 79 ygs-----------p~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~A 147 (341)
|+. ...++..+++.|++||+|++++ |... +....+...+.+++
T Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~------~~~~--------------------~~~~~~~~~v~~~~ 353 (396)
T 2as0_A 300 FVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS------CSQH--------------------VDLQMFKDMIIAAG 353 (396)
T ss_dssp SCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE------CCTT--------------------SCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE------CCCC--------------------CCHHHHHHHHHHHH
Confidence 332 1246678899999999988643 4321 33445667777888
Q ss_pred HhcCCcEEEEE-ecccCCCCeE
Q 019408 148 SAQGYHVSPLF-SYYSYHGPVF 168 (341)
Q Consensus 148 a~~~~~i~Pl~-s~~~~~dhy~ 168 (341)
.+.++.++.+- ...|+.||++
T Consensus 354 ~~~~~~~~~i~~~~~~~~d~p~ 375 (396)
T 2as0_A 354 AKAGKFLKMLEPYRTQAPDHPI 375 (396)
T ss_dssp HHTTEEEEESSCBBCSCTTSCC
T ss_pred HHcCCeEEEEeccCCCCCCCCc
Confidence 88999898887 7777777764
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-13 Score=130.06 Aligned_cols=124 Identities=16% Similarity=0.037 Sum_probs=100.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCc-cEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEK-RWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~-~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
+||||.+++.+++ .|+ +|+++|+|+.+++.+++|++.|++. + +++++++|+++++......+++||+|++||
T Consensus 161 gcGtG~~sl~la~-~ga-~V~~VD~s~~al~~a~~n~~~~gl~----~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP 234 (332)
T 2igt_A 161 FGYTGVASLVAAA-AGA-EVTHVDASKKAIGWAKENQVLAGLE----QAPIRWICEDAMKFIQREERRGSTYDIILTDPP 234 (332)
T ss_dssp TCTTCHHHHHHHH-TTC-EEEEECSCHHHHHHHHHHHHHHTCT----TSCEEEECSCHHHHHHHHHHHTCCBSEEEECCC
T ss_pred ccccCHHHHHHHH-cCC-EEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECcHHHHHHHHHhcCCCceEEEECCc
Confidence 6999999999998 688 9999999999999999999999984 3 488999999999865433356899999999
Q ss_pred -CCCC------------HHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHH
Q 019408 79 -FGSD------------SSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVR 145 (341)
Q Consensus 79 -ygsp------------~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~ 145 (341)
|+.. ..++..+.+.|++||+|.++++ |.. .+....+...+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~-----~~~--------------------~~~~~~~~~~l~~ 289 (332)
T 2igt_A 235 KFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA-----YSI--------------------RASFYSMHELMRE 289 (332)
T ss_dssp SEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE-----CCT--------------------TSCHHHHHHHHHH
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC-----CCC--------------------CCCHHHHHHHHHH
Confidence 3421 3667888999999999888776 432 1344567777788
Q ss_pred HHHhcCCcEE
Q 019408 146 EASAQGYHVS 155 (341)
Q Consensus 146 ~Aa~~~~~i~ 155 (341)
++.+.|+.++
T Consensus 290 a~~~~g~~v~ 299 (332)
T 2igt_A 290 TMRGAGGVVA 299 (332)
T ss_dssp HTTTSCSEEE
T ss_pred HHHHcCCeEE
Confidence 8888888776
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.8e-13 Score=130.01 Aligned_cols=135 Identities=17% Similarity=0.086 Sum_probs=110.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
+||+|.+++.++.. +.+|+++|+|+.+++.+++|++.|++. .++++++|+.+++......+.+||+|++||
T Consensus 217 g~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~-----~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~ 289 (382)
T 1wxx_A 217 FSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLG-----NVRVLEANAFDLLRRLEKEGERFDLVVLDPPA 289 (382)
T ss_dssp TCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCT-----TEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred eeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCC-----CceEEECCHHHHHHHHHhcCCCeeEEEECCCC
Confidence 68999999999984 678999999999999999999999984 488999999999876544456899999999
Q ss_pred CCCC-----------HHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHH
Q 019408 79 FGSD-----------SSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREA 147 (341)
Q Consensus 79 ygsp-----------~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~A 147 (341)
|+.. ..++..+++.|++||+|++++ |... +....+...+.+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~------~~~~--------------------~~~~~~~~~i~~~~ 343 (382)
T 1wxx_A 290 FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS------CSHH--------------------MTEPLFYAMVAEAA 343 (382)
T ss_dssp SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE------CCTT--------------------SCHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE------CCCC--------------------CCHHHHHHHHHHHH
Confidence 4421 246778999999999999744 4321 33445677788889
Q ss_pred HhcCCcEEEEEecccCCCCeE
Q 019408 148 SAQGYHVSPLFSYYSYHGPVF 168 (341)
Q Consensus 148 a~~~~~i~Pl~s~~~~~dhy~ 168 (341)
.+.++.++.+-...++.||++
T Consensus 344 ~~~g~~~~~i~~~~~~~d~p~ 364 (382)
T 1wxx_A 344 QDAHRLLRVVEKRGQPFDHPV 364 (382)
T ss_dssp HHTTCCEEEEEEECCCTTSCC
T ss_pred HHcCCeEEEEEcCCCCCCCCC
Confidence 999999999998888898875
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7.6e-13 Score=123.70 Aligned_cols=139 Identities=17% Similarity=0.136 Sum_probs=107.7
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+||||.+++.+++ .|+.+|+++|+|+.+++.+++|++.|++. ++++++++|+.+++. ...||+|++||..
T Consensus 133 gcG~G~~~~~la~-~~~~~V~~vD~s~~~~~~a~~n~~~n~~~----~~v~~~~~D~~~~~~-----~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 133 FAGIGHLSLPIAV-YGKAKVIAIEKDPYTFKFLVENIHLNKVE----DRMSAYNMDNRDFPG-----ENIADRILMGYVV 202 (278)
T ss_dssp TCTTTTTHHHHHH-HTCCEEEEECCCHHHHHHHHHHHHHTTCT----TTEEEECSCTTTCCC-----CSCEEEEEECCCS
T ss_pred cccCCHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHcCCC----ceEEEEECCHHHhcc-----cCCccEEEECCch
Confidence 6899999999998 57779999999999999999999999984 468899999987654 4689999999954
Q ss_pred CCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEE----
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSP---- 156 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~P---- 156 (341)
....+++.+.+.|++||+|.+.. |+... ......+..+.+.+.+.|+.++.
T Consensus 203 ~~~~~l~~~~~~LkpgG~l~~~~------~~~~~-------------------~~~~~~~~~i~~~~~~~G~~~~~~~~~ 257 (278)
T 2frn_A 203 RTHEFIPKALSIAKDGAIIHYHN------TVPEK-------------------LMPREPFETFKRITKEYGYDVEKLNEL 257 (278)
T ss_dssp SGGGGHHHHHHHEEEEEEEEEEE------EEEGG-------------------GTTTTTHHHHHHHHHHTTCEEEEEEEE
T ss_pred hHHHHHHHHHHHCCCCeEEEEEE------eeccc-------------------cccccHHHHHHHHHHHcCCeeEEeeeE
Confidence 45689999999999999999844 22100 00012345667888999999988
Q ss_pred -EEecccCCCCeEEEEEEEE
Q 019408 157 -LFSYYSYHGPVFRVMLRVH 175 (341)
Q Consensus 157 -l~s~~~~~dhy~Rv~vrv~ 175 (341)
+-++++..+|++ +-++|.
T Consensus 258 ~v~~~~p~~~h~~-~d~~v~ 276 (278)
T 2frn_A 258 KIKRYAPGVWHVV-LDLRVF 276 (278)
T ss_dssp EEEEETTTEEEEE-EEEEEE
T ss_pred EEEecCCCceEEE-EEEEEe
Confidence 778886666664 344443
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-11 Score=107.08 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=90.6
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||||..++.+++ .|+.+|+++|+|+.+++.+++|++.+++ .+++++++|+.+++... ..+.||+|++|| |
T Consensus 52 gcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~--~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 52 YAGSGALGLEALS-RGAASVLFVESDQRSAAVIARNIEALGL-----SGATLRRGAVAAVVAAG--TTSPVDLVLADPPY 123 (189)
T ss_dssp TCTTCHHHHHHHH-TTCSEEEEEECCHHHHHHHHHHHHHHTC-----SCEEEEESCHHHHHHHC--CSSCCSEEEECCCT
T ss_pred CCCcCHHHHHHHH-CCCCeEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEccHHHHHhhc--cCCCccEEEECCCC
Confidence 4899999999887 6888999999999999999999999987 36889999999987643 246899999998 7
Q ss_pred CCC----HHHHHHHHH--hcccCCEEEEEecCCC---CCCCCCchhHHhhhcccc
Q 019408 80 GSD----SSFLRTVFN--AVKRDGLLYLTSTDGY---SSGGHRPNNSLASYGAYI 125 (341)
Q Consensus 80 gsp----~~fld~al~--~v~~gGlL~vt~TD~~---~l~g~~~~~~~r~Yg~~~ 125 (341)
... .+++....+ .|++||+|++...... .+.+.......++||.+.
T Consensus 124 ~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 178 (189)
T 3p9n_A 124 NVDSADVDAILAALGTNGWTREGTVAVVERATTCAPLTWPEGWRRWPQRVYGDTR 178 (189)
T ss_dssp TSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTSCCCCCCTTEEECCCEEETTEE
T ss_pred CcchhhHHHHHHHHHhcCccCCCeEEEEEecCCCCCccCCCceEEEEEcccCcEE
Confidence 763 244555566 8999999998654322 233444455667787653
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-11 Score=126.49 Aligned_cols=96 Identities=18% Similarity=0.165 Sum_probs=80.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
|||||.+++.+++ .|+.+|+++|+|+.+++.+++|+++|++. .++++++++|+++++... +++||+|++||
T Consensus 547 g~GtG~~sl~aa~-~ga~~V~aVD~s~~al~~a~~N~~~ngl~---~~~v~~i~~D~~~~l~~~---~~~fD~Ii~DPP~ 619 (703)
T 3v97_A 547 FSYTGSATVHAGL-GGARSTTTVDMSRTYLEWAERNLRLNGLT---GRAHRLIQADCLAWLREA---NEQFDLIFIDPPT 619 (703)
T ss_dssp SCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCC---STTEEEEESCHHHHHHHC---CCCEEEEEECCCS
T ss_pred eechhHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEEecCHHHHHHhc---CCCccEEEECCcc
Confidence 6999999999998 69999999999999999999999999983 236899999999988753 46899999999
Q ss_pred CCCC-------------HHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGSD-------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp-------------~~fld~al~~v~~gGlL~vt~ 103 (341)
|+.. ..++..+.+.|++||+|++.+
T Consensus 620 f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~ 657 (703)
T 3v97_A 620 FSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSN 657 (703)
T ss_dssp BC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4311 134678899999999999744
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-11 Score=115.31 Aligned_cols=91 Identities=19% Similarity=0.106 Sum_probs=74.4
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|+|||.+|+|+++ ++++++++|.++.+++.|++|++.. .+++|++.|+++.|..+...+++||+|++|| |
T Consensus 99 faGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~-------~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 99 YPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFN-------KKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp EECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTT-------SCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred eCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcC-------CcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 7999999999998 4499999999999999999999741 4789999999999987766667899999999 9
Q ss_pred CCCHHHHHHHHHh------cccCCEEEE
Q 019408 80 GSDSSFLRTVFNA------VKRDGLLYL 101 (341)
Q Consensus 80 gsp~~fld~al~~------v~~gGlL~v 101 (341)
+.. ...+.+++. +.++|++.|
T Consensus 170 e~k-~~~~~vl~~L~~~~~r~~~Gi~v~ 196 (283)
T 2oo3_A 170 ERK-EEYKEIPYAIKNAYSKFSTGLYCV 196 (283)
T ss_dssp CST-THHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCC-cHHHHHHHHHHHhCccCCCeEEEE
Confidence 853 344444433 446888887
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.1e-11 Score=109.27 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=80.5
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+||+|.+++.+++..++.+|+++|+|+.+++.+++|++.|++. +++++++|+.++ .. ...||+|++||..
T Consensus 127 gcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-----~~~~~~~d~~~~-~~----~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 127 FAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-----NVIPILADNRDV-EL----KDVADRVIMGYVH 196 (272)
T ss_dssp TCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-----SEEEEESCGGGC-CC----TTCEEEEEECCCS
T ss_pred cCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CEEEEECChHHc-Cc----cCCceEEEECCcc
Confidence 5899999999998545679999999999999999999999984 577999999875 22 4579999999943
Q ss_pred CCHHHHHHHHHhcccCCEEEEEec
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~T 104 (341)
....+++.+++.+++||+|++++.
T Consensus 197 ~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 197 KTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 456899999999999999998664
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.16 E-value=4.4e-11 Score=106.10 Aligned_cols=120 Identities=15% Similarity=0.174 Sum_probs=88.9
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCc-ccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREF-FDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~-fDvIdlDP- 78 (341)
.||||..++.+++ .|+.+|+++|+|+.+++.+++|++.+++. ..+++++++|+.+++... ..+. ||+|++||
T Consensus 61 GcGtG~~~~~~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~~v~~~~~d~~~~~~~~--~~~~~fD~I~~~~~ 134 (201)
T 2ift_A 61 FAGSGSLGFEALS-RQAKKVTFLELDKTVANQLKKNLQTLKCS---SEQAEVINQSSLDFLKQP--QNQPHFDVVFLDPP 134 (201)
T ss_dssp TCTTCHHHHHHHH-TTCSEEEEECSCHHHHHHHHHHHHHTTCC---TTTEEEECSCHHHHTTSC--CSSCCEEEEEECCC
T ss_pred CCccCHHHHHHHH-ccCCEEEEEECCHHHHHHHHHHHHHhCCC---ccceEEEECCHHHHHHhh--ccCCCCCEEEECCC
Confidence 4899999999887 58889999999999999999999998871 126889999999875421 1357 99999999
Q ss_pred CCCC--HHHHHHH--HHhcccCCEEEEEecCCC--CCCCCCchhHHhhhccccC
Q 019408 79 FGSD--SSFLRTV--FNAVKRDGLLYLTSTDGY--SSGGHRPNNSLASYGAYIL 126 (341)
Q Consensus 79 ygsp--~~fld~a--l~~v~~gGlL~vt~TD~~--~l~g~~~~~~~r~Yg~~~~ 126 (341)
|... ..++... .+.|++||+|++++.... ..+........++||.+.+
T Consensus 135 ~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~yG~~~~ 188 (201)
T 2ift_A 135 FHFNLAEQAISLLCENNWLKPNALIYVETEKDKPLITPENWTLLKEKTTGIVSY 188 (201)
T ss_dssp SSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSSCCCCCTTEEEEEEEEETTEEE
T ss_pred CCCccHHHHHHHHHhcCccCCCcEEEEEECCCCCccccchhHHHHHHhcCCEEE
Confidence 5532 2334444 345999999998544332 2344555667788997753
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.1e-11 Score=115.04 Aligned_cols=89 Identities=16% Similarity=0.121 Sum_probs=77.6
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
|||||.+++. ++ ++.+|+++|+|+.+++.+++|++.|++. ++++++++|+.+++ ..||+|++||..
T Consensus 203 g~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~----~~v~~~~~D~~~~~-------~~fD~Vi~dpP~ 268 (336)
T 2yx1_A 203 FAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLE----HKIIPILSDVREVD-------VKGNRVIMNLPK 268 (336)
T ss_dssp TCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEESCGGGCC-------CCEEEEEECCTT
T ss_pred cCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEECChHHhc-------CCCcEEEECCcH
Confidence 6999999999 87 6889999999999999999999999984 46899999998775 479999999733
Q ss_pred CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~ 103 (341)
....+++.+++.+++||+|.+.+
T Consensus 269 ~~~~~l~~~~~~L~~gG~l~~~~ 291 (336)
T 2yx1_A 269 FAHKFIDKALDIVEEGGVIHYYT 291 (336)
T ss_dssp TGGGGHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCCEEEEEE
Confidence 34489999999999999998744
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=103.31 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=83.5
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||||..++.+++ +|+.+|+++|+|+.+++.+++|++.+++ .+++++++|+.+++.. ....||+|++|| |
T Consensus 62 gcG~G~~~~~l~~-~~~~~V~~vD~s~~~l~~a~~~~~~~~~-----~~v~~~~~D~~~~~~~---~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 62 FAGSGALGLEALS-RYAAGATLIEMDRAVSQQLIKNLATLKA-----GNARVVNSNAMSFLAQ---KGTPHNIVFVDPPF 132 (202)
T ss_dssp TCTTCHHHHHHHH-TTCSEEEEECSCHHHHHHHHHHHHHTTC-----CSEEEECSCHHHHHSS---CCCCEEEEEECCSS
T ss_pred CCCcCHHHHHHHh-cCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcEEEEECCHHHHHhh---cCCCCCEEEECCCC
Confidence 4899999999887 5888999999999999999999999987 3688999999987643 245799999998 5
Q ss_pred CCC--HHHHHHHHH--hcccCCEEEEEecCCCC---CCCCCchhHHhhhccc
Q 019408 80 GSD--SSFLRTVFN--AVKRDGLLYLTSTDGYS---SGGHRPNNSLASYGAY 124 (341)
Q Consensus 80 gsp--~~fld~al~--~v~~gGlL~vt~TD~~~---l~g~~~~~~~r~Yg~~ 124 (341)
... ..+++...+ .|++||+|++++..... +.........++||.+
T Consensus 133 ~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~ 184 (202)
T 2fpo_A 133 RRGLLEETINLLEDNGWLADEALIYVESEVENGLPTVPANWSLHREKVAGQV 184 (202)
T ss_dssp STTTHHHHHHHHHHTTCEEEEEEEEEEEEGGGCSCCCCTTEEEEEEEEETTE
T ss_pred CCCcHHHHHHHHHhcCccCCCcEEEEEECCCccccccCCcceEEeeeccCCE
Confidence 532 234444433 39999999985432211 1222333344566654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.4e-10 Score=97.47 Aligned_cols=99 Identities=21% Similarity=0.307 Sum_probs=78.9
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||+|..++.+++ .++.+|+++|+|+.+++.+++|++.+++. .+++++++|+.+.+.........||+|++|| |
T Consensus 52 GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~ 126 (187)
T 2fhp_A 52 YSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEP----EKFEVRKMDANRALEQFYEEKLQFDLVLLDPPY 126 (187)
T ss_dssp TCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCG----GGEEEEESCHHHHHHHHHHTTCCEEEEEECCCG
T ss_pred CCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCC----cceEEEECcHHHHHHHHHhcCCCCCEEEECCCC
Confidence 3899999999888 68889999999999999999999999873 4689999999997764433346899999998 5
Q ss_pred C--CCHHHHHHH--HHhcccCCEEEEEec
Q 019408 80 G--SDSSFLRTV--FNAVKRDGLLYLTST 104 (341)
Q Consensus 80 g--sp~~fld~a--l~~v~~gGlL~vt~T 104 (341)
. .....+... .+.|++||+++++..
T Consensus 127 ~~~~~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 127 AKQEIVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp GGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CchhHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 4 223444444 567899999998543
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-10 Score=98.46 Aligned_cols=116 Identities=13% Similarity=0.167 Sum_probs=85.7
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||+|..++.+++ .+..+|+++|+|+.+++.+++|++.+++. .+++++++|+.+++... ...||+|++|| |
T Consensus 39 GcG~G~~~~~l~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~~~~---~~~fD~i~~~~~~ 110 (177)
T 2esr_A 39 FAGSGGLAIEAVS-RGMSAAVLVEKNRKAQAIIQDNIIMTKAE----NRFTLLKMEAERAIDCL---TGRFDLVFLDPPY 110 (177)
T ss_dssp TCTTCHHHHHHHH-TTCCEEEEECCCHHHHHHHHHHHHTTTCG----GGEEEECSCHHHHHHHB---CSCEEEEEECCSS
T ss_pred CCCCCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHcCCC----CceEEEECcHHHhHHhh---cCCCCEEEECCCC
Confidence 3899999999988 47789999999999999999999998873 46899999999876543 34699999998 5
Q ss_pred CC--CHHHHHHHH--HhcccCCEEEEEecCCCC---CCCCCchhHHhhhccc
Q 019408 80 GS--DSSFLRTVF--NAVKRDGLLYLTSTDGYS---SGGHRPNNSLASYGAY 124 (341)
Q Consensus 80 gs--p~~fld~al--~~v~~gGlL~vt~TD~~~---l~g~~~~~~~r~Yg~~ 124 (341)
.. ...++.... +.|++||+++++...... ..........++||.+
T Consensus 111 ~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 162 (177)
T 2esr_A 111 AKETIVATIEALAAKNLLSEQVMVVCETDKTVLLPKEIATLGIWKEKIYGIS 162 (177)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEEETTCCCCSEETTEEEEEEEEETTE
T ss_pred CcchHHHHHHHHHhCCCcCCCcEEEEEECCccccccccCceEEEEeeecCcE
Confidence 21 123344444 788999999985432221 2233444445778766
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=92.23 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=78.0
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||+|..++.++. .|.. |+++|+|+.+++.+++|++.+++ ++++.++|+.+.+......+++||+|++|| |
T Consensus 49 GcG~G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~ 120 (171)
T 1ws6_A 49 FAGSGAVGLEAAS-EGWE-AVLVEKDPEAVRLLKENVRRTGL------GARVVALPVEVFLPEAKAQGERFTVAFMAPPY 120 (171)
T ss_dssp TCSSCHHHHHHHH-TTCE-EEEECCCHHHHHHHHHHHHHHTC------CCEEECSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred CCCcCHHHHHHHH-CCCe-EEEEeCCHHHHHHHHHHHHHcCC------ceEEEeccHHHHHHhhhccCCceEEEEECCCC
Confidence 3899999999988 5766 99999999999999999998865 467899999997765433345799999998 7
Q ss_pred -CCCHHHHHHHH--HhcccCCEEEEEec
Q 019408 80 -GSDSSFLRTVF--NAVKRDGLLYLTST 104 (341)
Q Consensus 80 -gsp~~fld~al--~~v~~gGlL~vt~T 104 (341)
.....+++... +.|++||.++++..
T Consensus 121 ~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 121 AMDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp TSCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred chhHHHHHHHHHhhcccCCCcEEEEEeC
Confidence 44446676666 88999999998554
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-09 Score=99.27 Aligned_cols=94 Identities=11% Similarity=0.156 Sum_probs=77.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||||..++.++. ++..+|+++|+|+.+++.+++|++.|++. ++++++++|+.++.... ...+||+|+.|| |.
T Consensus 58 ~G~G~~~~~la~-~~~~~v~gvDi~~~~~~~a~~n~~~~~~~----~~v~~~~~D~~~~~~~~--~~~~fD~Ii~npPy~ 130 (259)
T 3lpm_A 58 SGNGIIPLLLST-RTKAKIVGVEIQERLADMAKRSVAYNQLE----DQIEIIEYDLKKITDLI--PKERADIVTCNPPYF 130 (259)
T ss_dssp CTTTHHHHHHHT-TCCCEEEEECCSHHHHHHHHHHHHHTTCT----TTEEEECSCGGGGGGTS--CTTCEEEEEECCCC-
T ss_pred CchhHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCCc----ccEEEEECcHHHhhhhh--ccCCccEEEECCCCC
Confidence 899999999988 46559999999999999999999999984 57899999998765321 246899999998 53
Q ss_pred CC-----------------------HHHHHHHHHhcccCCEEEEE
Q 019408 81 SD-----------------------SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp-----------------------~~fld~al~~v~~gGlL~vt 102 (341)
.. ..+++.+.+.|++||.+++.
T Consensus 131 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 175 (259)
T 3lpm_A 131 ATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV 175 (259)
T ss_dssp ----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence 22 24778889999999999984
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-09 Score=105.64 Aligned_cols=93 Identities=16% Similarity=0.067 Sum_probs=72.9
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcC------------
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKR------------ 68 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~------------ 68 (341)
+||+|.+++.+|. ++.+|+++|+|+.|++.+++|++.|++. +++++++|+.+++......+
T Consensus 221 ~cG~G~~~l~la~--~~~~V~gvd~~~~ai~~a~~n~~~ng~~-----~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~ 293 (369)
T 3bt7_A 221 YCGNGNFSLALAR--NFDRVLATEIAKPSVAAAQYNIAANHID-----NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 293 (369)
T ss_dssp SCTTSHHHHHHGG--GSSEEEEECCCHHHHHHHHHHHHHTTCC-----SEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred cCCCCHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEECCHHHHHHHHhhcccccccccccccc
Confidence 6999999997775 5679999999999999999999999983 68899999999886543211
Q ss_pred CcccEEEeCC-CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 69 EFFDLIDIDS-FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 69 ~~fDvIdlDP-ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
..||+|++|| +. ...+.+++.++++|.|...+
T Consensus 294 ~~fD~Vv~dPPr~---g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 294 YQCETIFVDPPRS---GLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp CCEEEEEECCCTT---CCCHHHHHHHTTSSEEEEEE
T ss_pred CCCCEEEECcCcc---ccHHHHHHHHhCCCEEEEEE
Confidence 3799999999 21 12345667777777776544
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.92 E-value=6.7e-09 Score=96.50 Aligned_cols=98 Identities=16% Similarity=0.225 Sum_probs=78.4
Q ss_pred CccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
.||+|..++..+.. .+..+|+++|+|+.+++.+++|++.+++. +++++++|+.++..........||+|++||
T Consensus 91 gaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-----~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~P 165 (274)
T 3ajd_A 91 CAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-----NTIIINADMRKYKDYLLKNEIFFDKILLDAP 165 (274)
T ss_dssp TCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEESCHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred CCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-----cEEEEeCChHhcchhhhhccccCCEEEEcCC
Confidence 48999999998875 35578999999999999999999999873 688999999987653222245799999997
Q ss_pred C-CC--------------------CHHHHHHHHHhcccCCEEEEEec
Q 019408 79 F-GS--------------------DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 y-gs--------------------p~~fld~al~~v~~gGlL~vt~T 104 (341)
+ |. ...+++.+.+.|++||.|.+ +|
T Consensus 166 cs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~-st 211 (274)
T 3ajd_A 166 CSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVY-ST 211 (274)
T ss_dssp CC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEE-EE
T ss_pred CCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE-EE
Confidence 3 21 14678889999999999987 44
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-08 Score=90.84 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=80.0
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcC-CcccEEEeCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKR-EFFDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~-~~fDvIdlDPy 79 (341)
||+|..++.++...+ ..+|+++|+|+..++.+++|++.+++. ++++++++|+.+.+....... ..||+|++|+.
T Consensus 67 ~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~ 142 (223)
T 3duw_A 67 TLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN----DRVEVRTGLALDSLQQIENEKYEPFDFIFIDAD 142 (223)
T ss_dssp CTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEESCHHHHHHHHHHTTCCCCSEEEECSC
T ss_pred CCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCC
Confidence 799999999987532 358999999999999999999998874 568999999999877653322 57999999983
Q ss_pred -CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 -GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 -gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
.....+++.+.+.|++||+|++..
T Consensus 143 ~~~~~~~l~~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 143 KQNNPAYFEWALKLSRPGTVIIGDN 167 (223)
T ss_dssp GGGHHHHHHHHHHTCCTTCEEEEES
T ss_pred cHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 222467889999999999998743
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.3e-09 Score=92.53 Aligned_cols=134 Identities=14% Similarity=0.144 Sum_probs=97.3
Q ss_pred cc-ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CG-CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 ag-sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|| +|..++.++.. +..+|+++|+|+.+++.+++|++.+++ +++++++|+..+.. .....||+|+.|| |
T Consensus 64 ~G~~G~~~~~la~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~------~v~~~~~d~~~~~~---~~~~~fD~I~~npp~ 133 (230)
T 3evz_A 64 TGHTAMMALMAEKF-FNCKVTATEVDEEFFEYARRNIERNNS------NVRLVKSNGGIIKG---VVEGTFDVIFSAPPY 133 (230)
T ss_dssp CTTTCHHHHHHHHH-HCCEEEEEECCHHHHHHHHHHHHHTTC------CCEEEECSSCSSTT---TCCSCEEEEEECCCC
T ss_pred CCHHHHHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEeCCchhhhh---cccCceeEEEECCCC
Confidence 79 99999999884 356899999999999999999999876 46788999642211 1236899999998 5
Q ss_pred CCC----------------------HHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHH
Q 019408 80 GSD----------------------SSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLR 137 (341)
Q Consensus 80 gsp----------------------~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR 137 (341)
... ..+++.+.+.|++||.|++... ++ .
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-----~~--------------------~----- 183 (230)
T 3evz_A 134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLP-----DK--------------------E----- 183 (230)
T ss_dssp C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEE-----SC--------------------H-----
T ss_pred cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEec-----cc--------------------H-----
Confidence 321 4578888899999999998532 11 0
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecccCCCCeEEEEEEEEeCc
Q 019408 138 MLIGGAVREASAQGYHVSPLFSYYSYHGPVFRVMLRVHRKA 178 (341)
Q Consensus 138 ~ll~~i~~~Aa~~~~~i~Pl~s~~~~~dhy~Rv~vrv~~~~ 178 (341)
.....+.+...++|..++.+ .+. .++.++.+++..+.+
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~-~~~--~g~~~~~~l~f~~~~ 221 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDI-KFK--VGTRWRHSLIFFKGI 221 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-EEC--CCC-CEEEEEEECCC
T ss_pred hHHHHHHHHHHHcCCceEEE-Eec--CCCeEEEEEEEeccc
Confidence 12345566677788877765 455 677777777777654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.87 E-value=9.9e-09 Score=91.35 Aligned_cols=98 Identities=12% Similarity=0.110 Sum_probs=80.5
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcC--CcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKR--EFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~--~~fDvIdlDP 78 (341)
||+|..++.++...+ ..+|+++|+|+.+++.+++|++.+++. ++++++++|+.+.+......+ ..||+|++|+
T Consensus 73 ~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~ 148 (225)
T 3tr6_A 73 TFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS----DKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDA 148 (225)
T ss_dssp CTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEESCHHHHHHHHHTTTCTTCEEEEEECS
T ss_pred CcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC----CceEEEeCCHHHHHHHhhhccCCCCccEEEECC
Confidence 799999999987522 578999999999999999999998884 568999999999886543211 5899999999
Q ss_pred CC-CCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 FG-SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 yg-sp~~fld~al~~v~~gGlL~vt~ 103 (341)
.. ....+++.+.+.|++||+|++..
T Consensus 149 ~~~~~~~~l~~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 149 DKANTDLYYEESLKLLREGGLIAVDN 174 (225)
T ss_dssp CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 32 23467889999999999999743
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-08 Score=102.43 Aligned_cols=95 Identities=20% Similarity=0.296 Sum_probs=77.4
Q ss_pred CccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 1 MCGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 1 fagsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
.||+|..++.+|.. .+..+|+++|+|+.+++.+++|++.+++. ++++++.|+.++.... ...||+|++||-
T Consensus 113 caGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-----nv~v~~~Da~~l~~~~---~~~FD~Il~DaP 184 (456)
T 3m4x_A 113 CAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-----NAIVTNHAPAELVPHF---SGFFDRIVVDAP 184 (456)
T ss_dssp SCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-----SEEEECCCHHHHHHHH---TTCEEEEEEECC
T ss_pred CCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEeCCHHHhhhhc---cccCCEEEECCC
Confidence 48999999999875 34568999999999999999999999984 5889999999876433 358999999992
Q ss_pred --CCC------------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 80 --GSD------------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 --gsp------------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
|.- ..+++.|.+.|++||.|.. +|
T Consensus 185 CSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvY-sT 234 (456)
T 3m4x_A 185 CSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIY-ST 234 (456)
T ss_dssp CCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEE-EE
T ss_pred CCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE-EE
Confidence 110 1567889999999999886 55
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-08 Score=92.26 Aligned_cols=97 Identities=19% Similarity=0.155 Sum_probs=80.2
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC-
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF- 79 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy- 79 (341)
||+|..++.++...+ ..+|+++|+|+..++.+++|++.+++. +++++..+|+.+.+... .....||+|++|.-
T Consensus 72 ~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~----~~v~~~~~d~~~~l~~~-~~~~~fD~V~~d~~~ 146 (248)
T 3tfw_A 72 TLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD----QRVTLREGPALQSLESL-GECPAFDLIFIDADK 146 (248)
T ss_dssp CTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT----TTEEEEESCHHHHHHTC-CSCCCCSEEEECSCG
T ss_pred CCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEcCHHHHHHhc-CCCCCeEEEEECCch
Confidence 799999999987533 578999999999999999999998884 57899999999987654 22348999999983
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
....++++.+.+.|++||+|++..
T Consensus 147 ~~~~~~l~~~~~~LkpGG~lv~~~ 170 (248)
T 3tfw_A 147 PNNPHYLRWALRYSRPGTLIIGDN 170 (248)
T ss_dssp GGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeC
Confidence 223478899999999999999844
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-08 Score=90.59 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=80.3
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcC--CcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKR--EFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~--~~fDvIdlDP 78 (341)
||+|..++.++...+ ..+|+++|+|+.+++.+++|++.+++. ++++++++|+.+.+......+ ..||+|++||
T Consensus 78 ~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~----~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~ 153 (229)
T 2avd_A 78 TFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE----HKIDLRLKPALETLDELLAAGEAGTFDVAVVDA 153 (229)
T ss_dssp CTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT----TTEEEEESCHHHHHHHHHHTTCTTCEEEEEECS
T ss_pred CCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC----CeEEEEEcCHHHHHHHHHhcCCCCCccEEEECC
Confidence 789999999987522 578999999999999999999998874 578999999998876653322 5799999998
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEE
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt 102 (341)
......+++.+.+.|++||+|++.
T Consensus 154 ~~~~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 154 DKENCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp CSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 333347889999999999999974
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.84 E-value=9.3e-09 Score=92.82 Aligned_cols=95 Identities=15% Similarity=0.131 Sum_probs=78.8
Q ss_pred ccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
+|+|..++..+... ...+|+++|+|++.++.+++|++.+++. .++++++++|+.+++... ....||+|++|+ .
T Consensus 65 ~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---~~~i~~~~gda~~~l~~~--~~~~fD~V~~d~~~ 139 (221)
T 3dr5_A 65 PAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS---PSRVRFLLSRPLDVMSRL--ANDSYQLVFGQVSP 139 (221)
T ss_dssp TTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC---GGGEEEECSCHHHHGGGS--CTTCEEEEEECCCT
T ss_pred CCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---cCcEEEEEcCHHHHHHHh--cCCCcCeEEEcCcH
Confidence 78999999988742 2468999999999999999999998872 147999999999987643 135899999998 3
Q ss_pred CCCHHHHHHHHHhcccCCEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~v 101 (341)
.....|++.+.+.|++||+|++
T Consensus 140 ~~~~~~l~~~~~~LkpGG~lv~ 161 (221)
T 3dr5_A 140 MDLKALVDAAWPLLRRGGALVL 161 (221)
T ss_dssp TTHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEE
Confidence 4344689999999999999998
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-08 Score=94.75 Aligned_cols=96 Identities=20% Similarity=0.153 Sum_probs=78.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc--CCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI--ERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n--~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+|+|..++++++..++.+|+++|+|+.+++++++|+... ++. ..+++++.+|+.+++... .++||+|++|++
T Consensus 84 ~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~---~~rv~v~~~D~~~~l~~~---~~~fD~Ii~d~~ 157 (275)
T 1iy9_A 84 GGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLD---DPRVDVQVDDGFMHIAKS---ENQYDVIMVDST 157 (275)
T ss_dssp CTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTT---STTEEEEESCSHHHHHTC---CSCEEEEEESCS
T ss_pred CchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccC---CCceEEEECcHHHHHhhC---CCCeeEEEECCC
Confidence 799999999987447889999999999999999998652 331 247899999999988642 468999999984
Q ss_pred CC--------CHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GS--------DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gs--------p~~fld~al~~v~~gGlL~vt~ 103 (341)
.. ...|++.+.+.|++||++++..
T Consensus 158 ~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 158 EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 31 1479999999999999999854
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-08 Score=101.24 Aligned_cols=94 Identities=18% Similarity=0.251 Sum_probs=76.6
Q ss_pred CccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
.||+|..++..|... +..+|+++|+|+.+++.+++|++.+++ . ++++++|+.++.... ...||+|++||
T Consensus 109 gaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~-----~-v~~~~~Da~~l~~~~---~~~FD~Il~D~P 179 (464)
T 3m6w_A 109 AAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA-----P-LAVTQAPPRALAEAF---GTYFHRVLLDAP 179 (464)
T ss_dssp SCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC-----C-CEEECSCHHHHHHHH---CSCEEEEEEECC
T ss_pred cCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----e-EEEEECCHHHhhhhc---cccCCEEEECCC
Confidence 489999999999753 346899999999999999999999987 4 788999999876432 35899999998
Q ss_pred C-CC------C------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 79 F-GS------D------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 y-gs------p------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
+ |+ | ..+++.|.+.|++||.|.. +|
T Consensus 180 cSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lvy-sT 229 (464)
T 3m6w_A 180 CSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVY-ST 229 (464)
T ss_dssp CCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEE-EE
T ss_pred cCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE-Ee
Confidence 3 11 1 3467788999999999986 55
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.80 E-value=8.9e-08 Score=86.62 Aligned_cols=141 Identities=14% Similarity=0.117 Sum_probs=99.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||+|..++..+......+|+++|+|+.+++.+++|++.+++. +++++++|+.++.... .....||+|+.+.+..
T Consensus 79 ~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~~-~~~~~fD~V~~~~~~~ 152 (240)
T 1xdz_A 79 AGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-----NTTFCHDRAETFGQRK-DVRESYDIVTARAVAR 152 (240)
T ss_dssp SSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-----SEEEEESCHHHHTTCT-TTTTCEEEEEEECCSC
T ss_pred CCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CEEEEeccHHHhcccc-cccCCccEEEEeccCC
Confidence 799999999986433467999999999999999999999873 5889999998754210 0135799999998776
Q ss_pred CHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEecc
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYY 161 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s~~ 161 (341)
...+++.+.+.|++||.+++.. |... ..| +..+.+...++|..+.-...+.
T Consensus 153 ~~~~l~~~~~~LkpgG~l~~~~-------g~~~----------------~~~------~~~~~~~l~~~g~~~~~~~~~~ 203 (240)
T 1xdz_A 153 LSVLSELCLPLVKKNGLFVALK-------AASA----------------EEE------LNAGKKAITTLGGELENIHSFK 203 (240)
T ss_dssp HHHHHHHHGGGEEEEEEEEEEE-------CC-C----------------HHH------HHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEe-------CCCc----------------hHH------HHHHHHHHHHcCCeEeEEEEEe
Confidence 7788899999999999998742 2110 111 2344566677777665554444
Q ss_pred cCCCCeEEEEEEEEeC
Q 019408 162 SYHGPVFRVMLRVHRK 177 (341)
Q Consensus 162 ~~~dhy~Rv~vrv~~~ 177 (341)
.|...-.|.++.+.+.
T Consensus 204 ~~~~~~~~~l~~~~k~ 219 (240)
T 1xdz_A 204 LPIEESDRNIMVIRKI 219 (240)
T ss_dssp CTTTCCEEEEEEEEEC
T ss_pred cCCCCCceEEEEEEec
Confidence 3444445666666543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3e-08 Score=89.30 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=79.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe---CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI---DS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl---DP 78 (341)
||+|..++.+|.......|+++|+|+.+++.+++|++.+++. +++++++|+.+++.... ....||.|++ ||
T Consensus 43 cG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-----nv~~~~~Da~~~l~~~~-~~~~~d~v~~~~~~p 116 (218)
T 3dxy_A 43 FGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-----NLRVMCHDAVEVLHKMI-PDNSLRMVQLFFPDP 116 (218)
T ss_dssp CTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-----SEEEECSCHHHHHHHHS-CTTCEEEEEEESCCC
T ss_pred eeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-----cEEEEECCHHHHHHHHc-CCCChheEEEeCCCC
Confidence 799999999998533467999999999999999999998873 58999999999876532 2457998877 77
Q ss_pred CCCCH---------HHHHHHHHhcccCCEEEEEecCC
Q 019408 79 FGSDS---------SFLRTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 79 ygsp~---------~fld~al~~v~~gGlL~vt~TD~ 106 (341)
+-... .|++.+.+.|++||.|.+ +||-
T Consensus 117 ~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i-~td~ 152 (218)
T 3dxy_A 117 WHKARHNKRRIVQVPFAELVKSKLQLGGVFHM-ATDW 152 (218)
T ss_dssp CCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEE-EESC
T ss_pred ccchhhhhhhhhhHHHHHHHHHHcCCCcEEEE-EeCC
Confidence 54321 489999999999999998 6643
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.8e-09 Score=96.22 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=77.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHH---cCCCCCCCccEEEEeccHHHHHHHh---hhcCCcccEE
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS---IERGSGDEKRWVVTHFDANRVLSEC---YLKREFFDLI 74 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~---n~~~~~~~~~~~v~~~DA~~~l~~~---~~~~~~fDvI 74 (341)
.||||..++.++......+|+++|+|+.+++.+++|++. |++. ++++++++|+.+++... ......||+|
T Consensus 44 G~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~----~~v~~~~~D~~~~~~~~~~~~~~~~~fD~V 119 (260)
T 2ozv_A 44 GAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFS----ARIEVLEADVTLRAKARVEAGLPDEHFHHV 119 (260)
T ss_dssp CSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTG----GGEEEEECCTTCCHHHHHHTTCCTTCEEEE
T ss_pred CChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCc----ceEEEEeCCHHHHhhhhhhhccCCCCcCEE
Confidence 389999999999853346899999999999999999998 8774 56899999998775422 1124579999
Q ss_pred EeCC-CCCC---------------------HHHHHHHHHhcccCCEEEEE
Q 019408 75 DIDS-FGSD---------------------SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 75 dlDP-ygsp---------------------~~fld~al~~v~~gGlL~vt 102 (341)
+.|| |... ..++..+.+.|++||.+++.
T Consensus 120 v~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 120 IMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp EECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 9997 6532 35677888999999999984
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.4e-08 Score=90.51 Aligned_cols=98 Identities=17% Similarity=0.127 Sum_probs=80.5
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc---CCcccEEEeC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK---REFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~---~~~fDvIdlD 77 (341)
+|+|..++.++.... ..+|+++|+|+..++.+++|++.+++. ++++++++|+.+++...... ...||+|++|
T Consensus 88 ~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~----~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d 163 (247)
T 1sui_A 88 VYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD----HKIDFREGPALPVLDEMIKDEKNHGSYDFIFVD 163 (247)
T ss_dssp CGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG----GGEEEEESCHHHHHHHHHHSGGGTTCBSEEEEC
T ss_pred CCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CCeEEEECCHHHHHHHHHhccCCCCCEEEEEEc
Confidence 799999999987522 468999999999999999999998874 57899999999988654221 3579999999
Q ss_pred C-CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 78 S-FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 78 P-ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
. ......+++.+.+.|++||+|.+..
T Consensus 164 ~~~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 164 ADKDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SCSTTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred CchHHHHHHHHHHHHhCCCCeEEEEec
Confidence 8 3334578899999999999999743
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=88.82 Aligned_cols=93 Identities=18% Similarity=0.112 Sum_probs=78.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++.++......+|+++|+|+.+++.+++|++.+++ .++++.++|+.+.+.. ...||+|++++ +.
T Consensus 49 ~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~----~~~~D~i~~~~~~~ 119 (204)
T 3e05_A 49 AGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-----RNVTLVEAFAPEGLDD----LPDPDRVFIGGSGG 119 (204)
T ss_dssp CTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-----TTEEEEECCTTTTCTT----SCCCSEEEESCCTT
T ss_pred CCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CcEEEEeCChhhhhhc----CCCCCEEEECCCCc
Confidence 79999999999853357899999999999999999999987 3688999998765432 24699999998 55
Q ss_pred CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~ 103 (341)
.+..+++.+.+.|++||.|++..
T Consensus 120 ~~~~~l~~~~~~LkpgG~l~~~~ 142 (204)
T 3e05_A 120 MLEEIIDAVDRRLKSEGVIVLNA 142 (204)
T ss_dssp CHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CHHHHHHHHHHhcCCCeEEEEEe
Confidence 56688999999999999999854
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.8e-08 Score=90.25 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=79.9
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc---CCcccEEEeC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK---REFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~---~~~fDvIdlD 77 (341)
+|+|..++.+++... ..+|+++|+|+..++.+++|++.+++. ++++++++|+.+++...... ...||+|++|
T Consensus 79 ~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~----~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d 154 (237)
T 3c3y_A 79 VFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE----HKINFIESDAMLALDNLLQGQESEGSYDFGFVD 154 (237)
T ss_dssp CTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG----GGEEEEESCHHHHHHHHHHSTTCTTCEEEEEEC
T ss_pred CCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEcCHHHHHHHHHhccCCCCCcCEEEEC
Confidence 689999999988522 468999999999999999999998874 57899999999988765322 3579999999
Q ss_pred CC-CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 78 SF-GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 78 Py-gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+- .....+++.+.+.|++||+|.+..
T Consensus 155 ~~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 155 ADKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CchHHHHHHHHHHHHhcCCCeEEEEec
Confidence 72 222477889999999999998743
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.4e-08 Score=88.71 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=76.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||+|..++.+++ . ..+|+++|+|+.+++.+++|++.+++. ++++++++|+.+.+.. ...||+|++++-..
T Consensus 64 cG~G~~~~~la~-~-~~~v~~vD~s~~~~~~a~~~~~~~g~~----~~v~~~~~d~~~~~~~----~~~~D~v~~~~~~~ 133 (204)
T 3njr_A 64 GGSGSVSVEWCL-A-GGRAITIEPRADRIENIQKNIDTYGLS----PRMRAVQGTAPAALAD----LPLPEAVFIGGGGS 133 (204)
T ss_dssp CTTCHHHHHHHH-T-TCEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEESCTTGGGTT----SCCCSEEEECSCCC
T ss_pred CCCCHHHHHHHH-c-CCEEEEEeCCHHHHHHHHHHHHHcCCC----CCEEEEeCchhhhccc----CCCCCEEEECCccc
Confidence 799999999998 4 568999999999999999999999883 4789999999875432 24699999998323
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
+ ++++.+.+.|++||.|+++.
T Consensus 134 ~-~~l~~~~~~LkpgG~lv~~~ 154 (204)
T 3njr_A 134 Q-ALYDRLWEWLAPGTRIVANA 154 (204)
T ss_dssp H-HHHHHHHHHSCTTCEEEEEE
T ss_pred H-HHHHHHHHhcCCCcEEEEEe
Confidence 3 38899999999999999854
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.3e-08 Score=93.65 Aligned_cols=92 Identities=16% Similarity=0.185 Sum_probs=76.9
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcc---cEEEeC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFF---DLIDID 77 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~f---DvIdlD 77 (341)
.||||..++..+++ ...+|+++|+|+.+++.+++|++.+++. ++++++++|+...+. .+| |+|+.+
T Consensus 131 G~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~----~~v~~~~~D~~~~~~------~~f~~~D~Ivsn 199 (284)
T 1nv8_A 131 GTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVS----DRFFVRKGEFLEPFK------EKFASIEMILSN 199 (284)
T ss_dssp SCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCT----TSEEEEESSTTGGGG------GGTTTCCEEEEC
T ss_pred eCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC----CceEEEECcchhhcc------cccCCCCEEEEc
Confidence 38999999999997 6678999999999999999999999884 468999999987442 368 999999
Q ss_pred C-CCCCH----------------------HHHHHHH-HhcccCCEEEEEe
Q 019408 78 S-FGSDS----------------------SFLRTVF-NAVKRDGLLYLTS 103 (341)
Q Consensus 78 P-ygsp~----------------------~fld~al-~~v~~gGlL~vt~ 103 (341)
| |.... .++...+ +.+++||+|+++.
T Consensus 200 PPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 200 PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred CCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 8 65321 5778888 9999999999843
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-08 Score=90.64 Aligned_cols=94 Identities=16% Similarity=0.191 Sum_probs=79.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHH-HhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLS-ECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~-~~~~~~~~fDvIdlDP-y 79 (341)
||+|..++..+......+|+++|+|+.+++.+++|++.+++. ++++++++|+.+.+. .. ...||+|++|+ .
T Consensus 80 ~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~---~~~fD~V~~~~~~ 152 (232)
T 3ntv_A 80 TAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFE----NQVRIIEGNALEQFENVN---DKVYDMIFIDAAK 152 (232)
T ss_dssp CSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCT----TTEEEEESCGGGCHHHHT---TSCEEEEEEETTS
T ss_pred CchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEECCHHHHHHhhc---cCCccEEEEcCcH
Confidence 799999999987423578999999999999999999998874 478999999988776 43 35899999998 4
Q ss_pred CCCHHHHHHHHHhcccCCEEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt 102 (341)
.....+++.+.+.|++||+|++.
T Consensus 153 ~~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 153 AQSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEEe
Confidence 44457889999999999999874
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.6e-09 Score=95.48 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=80.4
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc--CCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK--REFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~--~~~fDvIdlDP 78 (341)
||+|..++.+|...+ ..+|+++|+|+.+++.+++|++.+++. ++++++++|+.+++...... ...||+|++|.
T Consensus 69 ~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~----~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~ 144 (242)
T 3r3h_A 69 TFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE----HKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDA 144 (242)
T ss_dssp SCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT----TTEEEEESCHHHHHHHHHHHHCSSCEEEEEEES
T ss_pred CCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcC
Confidence 799999999987422 468999999999999999999999884 57999999999988764321 35899999998
Q ss_pred C-CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 F-GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 y-gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
- .....+++.+.+.|++||+|++.-
T Consensus 145 ~~~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 145 DKTNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ChHHhHHHHHHHHHhcCCCeEEEEEC
Confidence 3 223467889999999999999844
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=9.9e-08 Score=87.63 Aligned_cols=140 Identities=10% Similarity=0.029 Sum_probs=103.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||..|+..+......+|+++|+|+.+++.+++|++.+++. +++++++|+.++.... .....||+|+..-+..
T Consensus 89 ~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-----~v~~~~~d~~~~~~~~-~~~~~fD~I~s~a~~~ 162 (249)
T 3g89_A 89 TGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-----GARALWGRAEVLAREA-GHREAYARAVARAVAP 162 (249)
T ss_dssp CTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-----SEEEEECCHHHHTTST-TTTTCEEEEEEESSCC
T ss_pred CCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----ceEEEECcHHHhhccc-ccCCCceEEEECCcCC
Confidence 799999999998655678999999999999999999999884 5899999998764310 1135899999987665
Q ss_pred CHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEecc
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYY 161 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s~~ 161 (341)
...+++.+.+.|++||.+++.. |..+ ..| +..+.+++.++|..+.-+..+.
T Consensus 163 ~~~ll~~~~~~LkpgG~l~~~~-------g~~~----------------~~e------~~~~~~~l~~~G~~~~~~~~~~ 213 (249)
T 3g89_A 163 LCVLSELLLPFLEVGGAAVAMK-------GPRV----------------EEE------LAPLPPALERLGGRLGEVLALQ 213 (249)
T ss_dssp HHHHHHHHGGGEEEEEEEEEEE-------CSCC----------------HHH------HTTHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEe-------CCCc----------------HHH------HHHHHHHHHHcCCeEEEEEEee
Confidence 5678888999999999988743 2210 111 2344556667788777777666
Q ss_pred cCCCCeEEEEEEEEe
Q 019408 162 SYHGPVFRVMLRVHR 176 (341)
Q Consensus 162 ~~~dhy~Rv~vrv~~ 176 (341)
.|...-.|..+.+.+
T Consensus 214 ~p~~~~~R~l~~~~k 228 (249)
T 3g89_A 214 LPLSGEARHLVVLEK 228 (249)
T ss_dssp CTTTCCEEEEEEEEE
T ss_pred CCCCCCcEEEEEEEe
Confidence 555445677666655
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.74 E-value=2.2e-08 Score=89.44 Aligned_cols=96 Identities=9% Similarity=0.135 Sum_probs=74.1
Q ss_pred ccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhh--cCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYL--KREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~--~~~~fDvIdlDP 78 (341)
||+|..++.++... ...+|+++|+|+.+++.+++|++.+++. ++++++++|+.+++..... ....||+|++|+
T Consensus 67 ~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~ 142 (221)
T 3u81_A 67 AYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ----DKVTILNGASQDLIPQLKKKYDVDTLDMVFLDH 142 (221)
T ss_dssp CTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG----GGEEEEESCHHHHGGGTTTTSCCCCCSEEEECS
T ss_pred CCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCC----CceEEEECCHHHHHHHHHHhcCCCceEEEEEcC
Confidence 79999999998742 2468999999999999999999999884 5799999999988765421 115799999998
Q ss_pred CCCCH----HHHHHHHHhcccCCEEEEE
Q 019408 79 FGSDS----SFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 ygsp~----~fld~al~~v~~gGlL~vt 102 (341)
..... .++... +.|++||+|++.
T Consensus 143 ~~~~~~~~~~~~~~~-~~LkpgG~lv~~ 169 (221)
T 3u81_A 143 WKDRYLPDTLLLEKC-GLLRKGTVLLAD 169 (221)
T ss_dssp CGGGHHHHHHHHHHT-TCCCTTCEEEES
T ss_pred CcccchHHHHHHHhc-cccCCCeEEEEe
Confidence 32211 233333 789999999873
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.73 E-value=6.7e-08 Score=84.78 Aligned_cols=86 Identities=23% Similarity=0.341 Sum_probs=69.2
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||+|..++.++. .|+.+|+++|+|+.+++.+++|++.+++ +++++++|+.++ ...||+|++|| |
T Consensus 57 g~G~G~~~~~l~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~d~~~~-------~~~~D~v~~~~p~ 122 (207)
T 1wy7_A 57 GAGTGVLSYGALL-LGAKEVICVEVDKEAVDVLIENLGEFKG------KFKVFIGDVSEF-------NSRVDIVIMNPPF 122 (207)
T ss_dssp TCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHTGGGTT------SEEEEESCGGGC-------CCCCSEEEECCCC
T ss_pred eCCCCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHcCC------CEEEEECchHHc-------CCCCCEEEEcCCC
Confidence 4899999999988 5788999999999999999999998865 478899998763 23799999999 6
Q ss_pred CCC-----HHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSD-----SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp-----~~fld~al~~v~~gGlL~vt~ 103 (341)
+.. ..+++.+.+.+ | .+++.+
T Consensus 123 ~~~~~~~~~~~l~~~~~~l--~-~~~~~~ 148 (207)
T 1wy7_A 123 GSQRKHADRPFLLKAFEIS--D-VVYSIH 148 (207)
T ss_dssp SSSSTTTTHHHHHHHHHHC--S-EEEEEE
T ss_pred ccccCCchHHHHHHHHHhc--C-cEEEEE
Confidence 532 36788888887 4 444434
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-08 Score=100.28 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=71.5
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
+||+|.+++.++. . +.+|+++|+|+.+++.+++|++.|++ . ++++++|+.+++. ..||+|++|| +
T Consensus 298 gcG~G~~sl~la~-~-~~~V~gvD~s~~ai~~A~~n~~~ngl-----~-v~~~~~d~~~~~~------~~fD~Vv~dPPr 363 (425)
T 2jjq_A 298 YSGVGTFGIYLAK-R-GFNVKGFDSNEFAIEMARRNVEINNV-----D-AEFEVASDREVSV------KGFDTVIVDPPR 363 (425)
T ss_dssp TCTTTHHHHHHHH-T-TCEEEEEESCHHHHHHHHHHHHHHTC-----C-EEEEECCTTTCCC------TTCSEEEECCCT
T ss_pred eccchHHHHHHHH-c-CCEEEEEECCHHHHHHHHHHHHHcCC-----c-EEEEECChHHcCc------cCCCEEEEcCCc
Confidence 5899999999987 3 46899999999999999999999987 4 7899999987642 1799999999 3
Q ss_pred -CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 -GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 -gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
|....+++ ++..++++|++++++
T Consensus 364 ~g~~~~~~~-~l~~l~p~givyvsc 387 (425)
T 2jjq_A 364 AGLHPRLVK-RLNREKPGVIVYVSC 387 (425)
T ss_dssp TCSCHHHHH-HHHHHCCSEEEEEES
T ss_pred cchHHHHHH-HHHhcCCCcEEEEEC
Confidence 33323444 456689999999954
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.7e-08 Score=93.72 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=76.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHH--cCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS--IERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~--n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+|+|..++..++..+..+|+++|+|+.+++.+++|+.. +++. ..+++++++|+.+++... .++||+|++||+
T Consensus 99 ~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~---~~~v~~~~~D~~~~l~~~---~~~fD~Ii~d~~ 172 (296)
T 1inl_A 99 GGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFD---DPRAEIVIANGAEYVRKF---KNEFDVIIIDST 172 (296)
T ss_dssp CTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGG---CTTEEEEESCHHHHGGGC---SSCEEEEEEEC-
T ss_pred CCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccC---CCceEEEECcHHHHHhhC---CCCceEEEEcCC
Confidence 79999999998854678999999999999999999865 3331 146899999999887532 457999999984
Q ss_pred CC---------CHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GS---------DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gs---------p~~fld~al~~v~~gGlL~vt~ 103 (341)
.. ...|++.+.+.|++||+|++..
T Consensus 173 ~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 173 DPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp ---------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 31 1478889999999999999853
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.72 E-value=5e-08 Score=88.11 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=80.1
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcC--CcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKR--EFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~--~~fDvIdlDP 78 (341)
||+|..++.++...+ ..+|+++|+|+.+++.+++|++.+++. +++++..+|+.+.+....... ..||+|++|.
T Consensus 81 ~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~----~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~ 156 (232)
T 3cbg_A 81 VFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA----EKISLRLGPALATLEQLTQGKPLPEFDLIFIDA 156 (232)
T ss_dssp CTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG----GGEEEEESCHHHHHHHHHTSSSCCCEEEEEECS
T ss_pred CCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECC
Confidence 789999999987532 358999999999999999999988874 578999999998887654322 5799999997
Q ss_pred C-CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 F-GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 y-gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
- .....+++.+.+.|++||+|++..
T Consensus 157 ~~~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 157 DKRNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3 223467889999999999999844
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.4e-08 Score=83.85 Aligned_cols=95 Identities=11% Similarity=0.046 Sum_probs=76.6
Q ss_pred ccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||+|..++.++... +..+|+++|+|+.+++.+++|++.+++. .+++++++|+.++... ..+.||+|+.|| |
T Consensus 31 cG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~---~~~~fD~v~~~~~~ 103 (197)
T 3eey_A 31 CGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI----DRVTLIKDGHQNMDKY---IDCPVKAVMFNLGY 103 (197)
T ss_dssp CTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCG----GGEEEECSCGGGGGGT---CCSCEEEEEEEESB
T ss_pred CCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CCeEEEECCHHHHhhh---ccCCceEEEEcCCc
Confidence 79999999998853 3458999999999999999999998873 4789999998765422 236899999997 4
Q ss_pred CC------------CHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GS------------DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gs------------p~~fld~al~~v~~gGlL~vt~ 103 (341)
-. +..++..+.+.|++||.|++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 104 LPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp CTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence 10 1357889999999999999854
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.1e-08 Score=95.20 Aligned_cols=94 Identities=17% Similarity=0.095 Sum_probs=76.1
Q ss_pred CccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
|||||...++++... ...+|+++|+|+.+++.+++|++.+++. .+++.++|+.++... ...||+|+.||
T Consensus 211 gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-----~i~~~~~D~~~~~~~----~~~~D~Ii~npP 281 (354)
T 3tma_A 211 FTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-----WIRFLRADARHLPRF----FPEVDRILANPP 281 (354)
T ss_dssp SCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-----TCEEEECCGGGGGGT----CCCCSEEEECCC
T ss_pred CCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEeCChhhCccc----cCCCCEEEECCC
Confidence 699999999999853 2367999999999999999999999872 678999999875321 24589999998
Q ss_pred CCCC-----------HHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGSD-----------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp-----------~~fld~al~~v~~gGlL~vt~ 103 (341)
||.. ..+++.+.+.+++||.+++..
T Consensus 282 yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 282 HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 8742 245667778999999999844
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=8.4e-08 Score=82.65 Aligned_cols=92 Identities=11% Similarity=0.024 Sum_probs=70.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC-CCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID-SFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD-Pyg 80 (341)
||+|..++.+++ . ..+|+++|+|+.+++.+++|++.+++. ++++.+.|+..+.. . ..+.||+|+.+ ||-
T Consensus 31 cG~G~~~~~la~-~-~~~v~~vD~s~~~l~~a~~~~~~~~~~-----~v~~~~~~~~~l~~-~--~~~~fD~v~~~~~~~ 100 (185)
T 3mti_A 31 MGNGNDTAFLAG-L-SKKVYAFDVQEQALGKTSQRLSDLGIE-----NTELILDGHENLDH-Y--VREPIRAAIFNLGYL 100 (185)
T ss_dssp CTTSHHHHHHHT-T-SSEEEEEESCHHHHHHHHHHHHHHTCC-----CEEEEESCGGGGGG-T--CCSCEEEEEEEEC--
T ss_pred CCCCHHHHHHHH-h-CCEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEeCcHHHHHh-h--ccCCcCEEEEeCCCC
Confidence 899999999998 4 568999999999999999999998873 67888877654321 1 14579999999 343
Q ss_pred CC------------HHHHHHHHHhcccCCEEEEEe
Q 019408 81 SD------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp------------~~fld~al~~v~~gGlL~vt~ 103 (341)
.. ..++..+.+.|++||.|.++.
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 135 (185)
T 3mti_A 101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI 135 (185)
T ss_dssp ---------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence 21 134577789999999999854
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.70 E-value=3.6e-08 Score=93.65 Aligned_cols=94 Identities=20% Similarity=0.156 Sum_probs=75.9
Q ss_pred CccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 1 fagsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
.||+|..++..+... +..+|+++|+|+..++.+++|++.+++. +++++++|+..+.. ....||+|++||-
T Consensus 126 g~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-----~v~~~~~D~~~~~~----~~~~fD~Il~d~P 196 (315)
T 1ixk_A 126 AAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-----NVILFHSSSLHIGE----LNVEFDKILLDAP 196 (315)
T ss_dssp CSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-----SEEEESSCGGGGGG----GCCCEEEEEEECC
T ss_pred CCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-----eEEEEECChhhccc----ccccCCEEEEeCC
Confidence 389999999998752 3468999999999999999999999883 58899999986542 2357999999982
Q ss_pred --CC------C------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 80 --GS------D------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 --gs------p------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
|. | ..+++.+.+.|++||.|.+ +|
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~-st 246 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVY-ST 246 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-EE
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE-Ee
Confidence 21 1 3677889999999999987 55
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.5e-08 Score=91.30 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=74.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||||..++..+.+.+..+|+++|+|+.+++.+++|++.+++. ++++.++|+...+. ...||+|+.+| |.
T Consensus 118 ~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-----~v~~~~~d~~~~~~-----~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 118 TGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-----NIHILQSDWFSALA-----GQQFAMIVSNPPYI 187 (276)
T ss_dssp CTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-----SEEEECCSTTGGGT-----TCCEEEEEECCCCB
T ss_pred CCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEEcchhhhcc-----cCCccEEEECCCCC
Confidence 799999999998655678999999999999999999999873 68899999876431 35799999998 64
Q ss_pred CC----------------------------HHHHHHHHHhcccCCEEEEE
Q 019408 81 SD----------------------------SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp----------------------------~~fld~al~~v~~gGlL~vt 102 (341)
.. ..+++.+.+.|++||+|.++
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22 24566778899999999985
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.9e-08 Score=85.73 Aligned_cols=93 Identities=15% Similarity=0.116 Sum_probs=76.8
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||+|..++..+.... ..+|+++|+|+.+++.+++|++.+++. ++++++++|+.+.+... .. ||+|++|. .
T Consensus 65 ~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~---~~-fD~v~~~~~~ 136 (210)
T 3c3p_A 65 DGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI----DRVELQVGDPLGIAAGQ---RD-IDILFMDCDV 136 (210)
T ss_dssp CGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGG----GGEEEEESCHHHHHTTC---CS-EEEEEEETTT
T ss_pred CCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC----ceEEEEEecHHHHhccC---CC-CCEEEEcCCh
Confidence 799999999987422 468999999999999999999988773 56899999999876532 34 99999997 3
Q ss_pred CCCHHHHHHHHHhcccCCEEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt 102 (341)
.....+++.+.+.|++||+|++.
T Consensus 137 ~~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 137 FNGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred hhhHHHHHHHHHhcCCCeEEEEE
Confidence 33457788999999999999974
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.6e-08 Score=92.77 Aligned_cols=96 Identities=21% Similarity=0.203 Sum_probs=78.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHH--cCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS--IERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~--n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+|+|..+++.++..+..+|+++|+|+.+++.+++|+.. ++++ ..+++++++|+.+++... .++||+|++||+
T Consensus 125 ~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~---~~~v~~~~~D~~~~l~~~---~~~fDvIi~d~~ 198 (321)
T 2pt6_A 125 GGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYE---DKRVNVFIEDASKFLENV---TNTYDVIIVDSS 198 (321)
T ss_dssp CTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGG---STTEEEEESCHHHHHHHC---CSCEEEEEEECC
T ss_pred CCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC---CCcEEEEEccHHHHHhhc---CCCceEEEECCc
Confidence 69999999998854678999999999999999999876 3331 146899999999987643 457999999984
Q ss_pred ---CCC-----HHHHHHHHHhcccCCEEEEEe
Q 019408 80 ---GSD-----SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 ---gsp-----~~fld~al~~v~~gGlL~vt~ 103 (341)
+.+ ..|++.+.+.|++||+|++..
T Consensus 199 ~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 199 DPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 211 478889999999999999864
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=6.7e-08 Score=90.26 Aligned_cols=93 Identities=20% Similarity=0.196 Sum_probs=75.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc--CC-------CCCCCccEEEEeccHHHHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI--ER-------GSGDEKRWVVTHFDANRVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n--~~-------~~~~~~~~~v~~~DA~~~l~~~~~~~~~fD 72 (341)
+|+|..+++.++. +..+|+++|+|+.+++.+++|+ .. ++ . ..+++++.+|+.+++.. .+.||
T Consensus 84 ~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~---~~~v~~~~~D~~~~l~~----~~~fD 154 (281)
T 1mjf_A 84 GGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGK---HEKAKLTIGDGFEFIKN----NRGFD 154 (281)
T ss_dssp CTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTC---CSSEEEEESCHHHHHHH----CCCEE
T ss_pred CCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCC---CCcEEEEECchHHHhcc----cCCee
Confidence 6999999999985 8889999999999999999998 32 21 1 14688999999998764 35799
Q ss_pred EEEeCCCC---C-----CHHHHHHHHHhcccCCEEEEEe
Q 019408 73 LIDIDSFG---S-----DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 73 vIdlDPyg---s-----p~~fld~al~~v~~gGlL~vt~ 103 (341)
+|++|++. . ...|++.+.+.|++||+|++..
T Consensus 155 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 155 VIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 99999852 1 1468889999999999999853
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.4e-08 Score=91.66 Aligned_cols=96 Identities=19% Similarity=0.191 Sum_probs=76.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHH--cCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS--IERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~--n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+|+|..+++.++..+..+|+++|+|+..++.+++|+.. +++. ..+++++.+|+.+++... .++||+|++|++
T Consensus 104 ~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~---~~rv~v~~~Da~~~l~~~---~~~fD~Ii~d~~ 177 (304)
T 2o07_A 104 GGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYS---SSKLTLHVGDGFEFMKQN---QDAFDVIITDSS 177 (304)
T ss_dssp CTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG---CTTEEEEESCHHHHHHTC---SSCEEEEEEECC
T ss_pred CCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccC---CCcEEEEECcHHHHHhhC---CCCceEEEECCC
Confidence 69999999998744568999999999999999999876 3431 146899999999988642 468999999984
Q ss_pred CC--------CHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GS--------DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gs--------p~~fld~al~~v~~gGlL~vt~ 103 (341)
.. ...|++.+.+.|++||+|++..
T Consensus 178 ~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 178 DPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp -----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 31 1257889999999999999855
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.3e-08 Score=97.14 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=74.7
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||+|.+++..+.. +.+|+++|+|+.+++.+++|++.|++. +++++++|+.+.+.........||+|++|| |
T Consensus 294 gcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~-----~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr 366 (433)
T 1uwv_A 294 FCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQ-----NVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR 366 (433)
T ss_dssp SCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEECCTTSCCSSSGGGTTCCSEEEECCCT
T ss_pred CCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEECCHHHHhhhhhhhcCCCCEEEECCCC
Confidence 48999999999984 568999999999999999999999883 688999999875543212235799999999 5
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
.....++ ..+..++++++++|++
T Consensus 367 ~g~~~~~-~~l~~~~p~~ivyvsc 389 (433)
T 1uwv_A 367 AGAAGVM-QQIIKLEPIRIVYVSC 389 (433)
T ss_dssp TCCHHHH-HHHHHHCCSEEEEEES
T ss_pred ccHHHHH-HHHHhcCCCeEEEEEC
Confidence 4344444 3455678899999854
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.64 E-value=2e-07 Score=83.15 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=76.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe---CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI---DS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl---DP 78 (341)
||+|..++..|.......|+++|+|+.+++.+++|++.+++. +++++++|+..+.... ....||.|++ ||
T Consensus 47 cG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~-----nv~~~~~d~~~l~~~~--~~~~~d~v~~~~~~p 119 (213)
T 2fca_A 47 TGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-----NVKLLNIDADTLTDVF--EPGEVKRVYLNFSDP 119 (213)
T ss_dssp CTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-----SEEEECCCGGGHHHHC--CTTSCCEEEEESCCC
T ss_pred cCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCC-----CEEEEeCCHHHHHhhc--CcCCcCEEEEECCCC
Confidence 799999999988643468999999999999999999988873 6889999998743222 2346998876 67
Q ss_pred CCC---------CHHHHHHHHHhcccCCEEEEEecC
Q 019408 79 FGS---------DSSFLRTVFNAVKRDGLLYLTSTD 105 (341)
Q Consensus 79 ygs---------p~~fld~al~~v~~gGlL~vt~TD 105 (341)
+.. ...+++.+.+.|++||.|.+ .||
T Consensus 120 ~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~-~td 154 (213)
T 2fca_A 120 WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF-KTD 154 (213)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE-EES
T ss_pred CcCccccccccCcHHHHHHHHHHcCCCCEEEE-EeC
Confidence 543 24789999999999999998 443
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.5e-08 Score=86.13 Aligned_cols=95 Identities=14% Similarity=0.001 Sum_probs=56.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||||..++.++......+|+++|+|+.+++.+++|++.++. +++++++|+.+.+.........||+|+.|| |.
T Consensus 39 ~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~ 112 (215)
T 4dzr_A 39 TGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA------VVDWAAADGIEWLIERAERGRPWHAIVSNPPYI 112 (215)
T ss_dssp SSBCHHHHHHHHHCTTEEEEEEECC-------------------------CCHHHHHHHHHHHHHTTCCBSEEEECCCCC
T ss_pred CCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC------ceEEEEcchHhhhhhhhhccCcccEEEECCCCC
Confidence 79999999999852235899999999999999999998764 467889999986654222346899999998 53
Q ss_pred CC-----------------------------HHHHHHHHHhcccCCE-EEEE
Q 019408 81 SD-----------------------------SSFLRTVFNAVKRDGL-LYLT 102 (341)
Q Consensus 81 sp-----------------------------~~fld~al~~v~~gGl-L~vt 102 (341)
.. ..++..+.+.|++||. ++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 113 PTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp C------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred CCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 21 3445566688999999 5553
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.63 E-value=6.1e-08 Score=85.97 Aligned_cols=96 Identities=13% Similarity=0.066 Sum_probs=75.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG- 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg- 80 (341)
||+|..++.++......+|+++|+|+.+++.+++|++.+++ .+++++++|+..+... .....||+|++++--
T Consensus 50 cG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~--~~~~~~D~i~~~~~~~ 122 (214)
T 1yzh_A 50 SGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-----PNIKLLWVDGSDLTDY--FEDGEIDRLYLNFSDP 122 (214)
T ss_dssp CTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-----SSEEEEECCSSCGGGT--SCTTCCSEEEEESCCC
T ss_pred cCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-----CCEEEEeCCHHHHHhh--cCCCCCCEEEEECCCC
Confidence 79999999999863346899999999999999999999887 3688999999863211 123579999988621
Q ss_pred C-----------CHHHHHHHHHhcccCCEEEEEecC
Q 019408 81 S-----------DSSFLRTVFNAVKRDGLLYLTSTD 105 (341)
Q Consensus 81 s-----------p~~fld~al~~v~~gGlL~vt~TD 105 (341)
. ...+++.+.+.|++||.|.+ .||
T Consensus 123 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~ 157 (214)
T 1yzh_A 123 WPKKRHEKRRLTYKTFLDTFKRILPENGEIHF-KTD 157 (214)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE-EES
T ss_pred ccccchhhhccCCHHHHHHHHHHcCCCcEEEE-EeC
Confidence 0 13689999999999999998 443
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.63 E-value=8.1e-08 Score=91.51 Aligned_cols=96 Identities=20% Similarity=0.154 Sum_probs=75.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc--CCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI--ERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n--~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+|+|..++..++..+..+|+++|+|+.+++.+++|+..+ ++. ..+++++.+|+.+++.. ..++||+|++|++
T Consensus 117 ~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~---~~rv~~~~~D~~~~l~~---~~~~fD~Ii~d~~ 190 (314)
T 2b2c_A 117 GGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFS---HPKLDLFCGDGFEFLKN---HKNEFDVIITDSS 190 (314)
T ss_dssp CTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGG---CTTEEEECSCHHHHHHH---CTTCEEEEEECCC
T ss_pred CCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccC---CCCEEEEEChHHHHHHh---cCCCceEEEEcCC
Confidence 689999999987545689999999999999999998753 331 14789999999998865 2458999999984
Q ss_pred C---CC-----HHHHHHHHHhcccCCEEEEEe
Q 019408 80 G---SD-----SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 g---sp-----~~fld~al~~v~~gGlL~vt~ 103 (341)
. .+ ..|++.+.+.|++||+|++..
T Consensus 191 ~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 191 DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp -------------HHHHHHHHEEEEEEEEEEC
T ss_pred CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 2 11 477888899999999999854
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.8e-07 Score=84.41 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=78.6
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc------------C
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK------------R 68 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~------------~ 68 (341)
||+|..++.++...+ ..+|+++|+|+.+++.+++|++.+++. +++++.++|+.+.+...... +
T Consensus 69 ~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~----~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~ 144 (239)
T 2hnk_A 69 TFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE----NKIFLKLGSALETLQVLIDSKSAPSWASDFAFG 144 (239)
T ss_dssp CTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG----GGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCS
T ss_pred CCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CCEEEEECCHHHHHHHHHhhcccccccccccCC
Confidence 789999999987533 568999999999999999999988874 46899999999877654221 2
Q ss_pred -CcccEEEeCCC-CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 69 -EFFDLIDIDSF-GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 69 -~~fDvIdlDPy-gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
..||+|++|.- .....+++.+.+.|++||+|++..
T Consensus 145 ~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 145 PSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 57999999962 222367888999999999999854
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-07 Score=79.34 Aligned_cols=92 Identities=23% Similarity=0.217 Sum_probs=77.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++.++. .+ .+|+++|+|+.+++.+++|++.+++. .++++.+.|+...+.. ...||+|++++ +.
T Consensus 42 ~G~G~~~~~l~~-~~-~~v~~~D~~~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~~~----~~~~D~v~~~~~~~ 111 (192)
T 1l3i_A 42 CGTGGVTLELAG-RV-RRVYAIDRNPEAISTTEMNLQRHGLG----DNVTLMEGDAPEALCK----IPDIDIAVVGGSGG 111 (192)
T ss_dssp CTTSHHHHHHHT-TS-SEEEEEESCHHHHHHHHHHHHHTTCC----TTEEEEESCHHHHHTT----SCCEEEEEESCCTT
T ss_pred CCCCHHHHHHHH-hc-CEEEEEECCHHHHHHHHHHHHHcCCC----cceEEEecCHHHhccc----CCCCCEEEECCchH
Confidence 799999999987 45 78999999999999999999998873 4688899999875432 13799999998 45
Q ss_pred CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~ 103 (341)
....+++.+.+.+++||.+.+..
T Consensus 112 ~~~~~l~~~~~~l~~gG~l~~~~ 134 (192)
T 1l3i_A 112 ELQEILRIIKDKLKPGGRIIVTA 134 (192)
T ss_dssp CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEe
Confidence 55788899999999999999854
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.8e-08 Score=90.54 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=60.7
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCH-------HHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccE
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGND-------AHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDL 73 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~-------~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDv 73 (341)
.||+|..++.+|+ .|. +|+++|+|+ .+++.+++|++.|++. ++++++++|+.+++......+..||+
T Consensus 91 gcG~G~~a~~lA~-~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~----~ri~~~~~d~~~~l~~~~~~~~~fD~ 164 (258)
T 2r6z_A 91 TAGLGRDSFVLAS-LGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTA----ARINLHFGNAAEQMPALVKTQGKPDI 164 (258)
T ss_dssp TCTTCHHHHHHHH-TTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH----TTEEEEESCHHHHHHHHHHHHCCCSE
T ss_pred eCccCHHHHHHHH-hCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCc----cCeEEEECCHHHHHHhhhccCCCccE
Confidence 5899999999998 465 699999999 9999999999998873 35899999999988654221247999
Q ss_pred EEeCC
Q 019408 74 IDIDS 78 (341)
Q Consensus 74 IdlDP 78 (341)
|++||
T Consensus 165 V~~dP 169 (258)
T 2r6z_A 165 VYLDP 169 (258)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99999
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-07 Score=95.69 Aligned_cols=95 Identities=23% Similarity=0.358 Sum_probs=76.0
Q ss_pred CccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
.||+|..++..|... +..+|+++|+|+..++.+++|++.+++. +++++++|+..+.... ...||+|.+||
T Consensus 125 ~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-----nv~~~~~D~~~~~~~~---~~~fD~Il~D~P 196 (479)
T 2frx_A 125 AAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-----NVALTHFDGRVFGAAV---PEMFDAILLDAP 196 (479)
T ss_dssp SCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-----SEEEECCCSTTHHHHS---TTCEEEEEEECC
T ss_pred CCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEeCCHHHhhhhc---cccCCEEEECCC
Confidence 489999999998753 3468999999999999999999999883 5889999998765322 35799999998
Q ss_pred C-CC------C------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 79 F-GS------D------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 y-gs------p------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
+ |. | ..+++.|.+.|++||.|.. +|
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lvy-sT 246 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY-ST 246 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-EE
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEE-ec
Confidence 3 21 1 1357788899999999986 45
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-07 Score=85.21 Aligned_cols=96 Identities=16% Similarity=0.180 Sum_probs=78.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++.++...+..+|+++|+|+..++.+++|++.+++. +++++.++|+...+.... ....||+|++|+ ..
T Consensus 63 ~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~-~~~~fD~I~~~~~~~ 137 (233)
T 2gpy_A 63 TAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLE----SRIELLFGDALQLGEKLE-LYPLFDVLFIDAAKG 137 (233)
T ss_dssp CTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCT----TTEEEECSCGGGSHHHHT-TSCCEEEEEEEGGGS
T ss_pred CCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEECCHHHHHHhcc-cCCCccEEEECCCHH
Confidence 789999999887533568999999999999999999998874 468899999988665431 135799999998 44
Q ss_pred CCHHHHHHHHHhcccCCEEEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt 102 (341)
....+++.+.+.|++||.|++.
T Consensus 138 ~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 138 QYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp CHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEE
Confidence 4457889999999999999984
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=5.1e-08 Score=95.31 Aligned_cols=91 Identities=20% Similarity=0.276 Sum_probs=75.5
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||+|..++.+++ .|+ +|+++|+|+.+++.+++|++.|++ .++++++|+.+... ....||+|+.+| |
T Consensus 241 GcG~G~~~~~la~-~g~-~V~gvDis~~al~~A~~n~~~~~~------~v~~~~~D~~~~~~----~~~~fD~Ii~npp~ 308 (381)
T 3dmg_A 241 GAGYGALTLPLAR-MGA-EVVGVEDDLASVLSLQKGLEANAL------KAQALHSDVDEALT----EEARFDIIVTNPPF 308 (381)
T ss_dssp TCTTSTTHHHHHH-TTC-EEEEEESBHHHHHHHHHHHHHTTC------CCEEEECSTTTTSC----TTCCEEEEEECCCC
T ss_pred eeeCCHHHHHHHH-cCC-EEEEEECCHHHHHHHHHHHHHcCC------CeEEEEcchhhccc----cCCCeEEEEECCch
Confidence 3899999999998 565 899999999999999999999987 36788999986543 135899999998 5
Q ss_pred CC--------CHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GS--------DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gs--------p~~fld~al~~v~~gGlL~vt~ 103 (341)
.. ...++..+.+.|++||.|++.+
T Consensus 309 ~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 309 HVGGAVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp CTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 43 1357788889999999999854
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.8e-07 Score=79.58 Aligned_cols=93 Identities=16% Similarity=0.234 Sum_probs=75.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++.++...+..+|+++|+|+.+++.+++|++.+++. .++ ++++|+.+.+.. ....||+|+++. +.
T Consensus 34 ~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~~-~~~~d~~~~~~~---~~~~~D~i~~~~~~~ 105 (178)
T 3hm2_A 34 GGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVS----DRI-AVQQGAPRAFDD---VPDNPDVIFIGGGLT 105 (178)
T ss_dssp TTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCT----TSE-EEECCTTGGGGG---CCSCCSEEEECC-TT
T ss_pred CCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCC----CCE-EEecchHhhhhc---cCCCCCEEEECCccc
Confidence 799999999988544678999999999999999999988873 367 778888654432 125799999988 44
Q ss_pred CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~ 103 (341)
. ..+++.+.+.|++||.|.++.
T Consensus 106 ~-~~~l~~~~~~L~~gG~l~~~~ 127 (178)
T 3hm2_A 106 A-PGVFAAAWKRLPVGGRLVANA 127 (178)
T ss_dssp C-TTHHHHHHHTCCTTCEEEEEE
T ss_pred H-HHHHHHHHHhcCCCCEEEEEe
Confidence 3 478999999999999999854
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=88.01 Aligned_cols=96 Identities=19% Similarity=0.187 Sum_probs=77.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHH-cC--CCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS-IE--RGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~-n~--~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+|+|..+.+.++..+..+|+++|+|+.+++.+++|+.. |+ ++ ..+++++.+|+.+++... .++||+|++|+
T Consensus 86 ~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~---~~~v~~~~~D~~~~l~~~---~~~fD~Ii~d~ 159 (314)
T 1uir_A 86 GGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFD---DPRAVLVIDDARAYLERT---EERYDVVIIDL 159 (314)
T ss_dssp CTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGG---CTTEEEEESCHHHHHHHC---CCCEEEEEEEC
T ss_pred CCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccccc---CCceEEEEchHHHHHHhc---CCCccEEEECC
Confidence 68999999988754578999999999999999999874 22 21 146899999999987652 45799999998
Q ss_pred CCC-----------CHHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGS-----------DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygs-----------p~~fld~al~~v~~gGlL~vt~ 103 (341)
+.. ...|++.+.+.|++||+|++..
T Consensus 160 ~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 160 TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 431 1478889999999999999854
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.56 E-value=9.4e-08 Score=92.73 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=72.8
Q ss_pred cccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 3 GCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
|+|..++.++. .++ .+|+++|+|+.+++.+++|++.+++. +++++++|+.+.+.. .....||+|++|| |+
T Consensus 181 G~G~~~~~la~-~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-----~v~~~~~D~~~~l~~--~~~~~fD~Vi~~~p~~ 252 (373)
T 2qm3_A 181 DDDLTSIALML-SGLPKRIAVLDIDERLTKFIEKAANEIGYE-----DIEIFTFDLRKPLPD--YALHKFDTFITDPPET 252 (373)
T ss_dssp CTTCHHHHHHH-HTCCSEEEEECSCHHHHHHHHHHHHHHTCC-----CEEEECCCTTSCCCT--TTSSCBSEEEECCCSS
T ss_pred CCCHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CEEEEEChhhhhchh--hccCCccEEEECCCCc
Confidence 89999999987 465 79999999999999999999999873 688999999763321 0134799999998 54
Q ss_pred C--CHHHHHHHHHhcccCC-EEEE
Q 019408 81 S--DSSFLRTVFNAVKRDG-LLYL 101 (341)
Q Consensus 81 s--p~~fld~al~~v~~gG-lL~v 101 (341)
. ...|+..+.+.+++|| ++++
T Consensus 253 ~~~~~~~l~~~~~~LkpgG~~~~~ 276 (373)
T 2qm3_A 253 LEAIRAFVGRGIATLKGPRCAGYF 276 (373)
T ss_dssp HHHHHHHHHHHHHTBCSTTCEEEE
T ss_pred hHHHHHHHHHHHHHcccCCeEEEE
Confidence 2 1367889999999999 4444
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.3e-07 Score=89.17 Aligned_cols=97 Identities=15% Similarity=0.148 Sum_probs=77.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc--CCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI--ERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n--~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+|+|..+++.++..+..+|+++|+|+.+++.+++|+..+ ++. ..+++++++|+.+++... ....||+|++|++
T Consensus 129 ~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~---~~rv~~~~~D~~~~l~~~--~~~~fDlIi~d~~ 203 (334)
T 1xj5_A 129 GGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE---DPRVNLVIGDGVAFLKNA--AEGSYDAVIVDSS 203 (334)
T ss_dssp CSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG---STTEEEEESCHHHHHHTS--CTTCEEEEEECCC
T ss_pred CCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC---CCcEEEEECCHHHHHHhc--cCCCccEEEECCC
Confidence 699999999988545679999999999999999999753 331 146899999999987643 2357999999985
Q ss_pred ---CC-----CHHHHHHHHHhcccCCEEEEEe
Q 019408 80 ---GS-----DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 ---gs-----p~~fld~al~~v~~gGlL~vt~ 103 (341)
+. ...|+..+.+.|++||+|++.+
T Consensus 204 ~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 204 DPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 21 1368889999999999999853
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.5e-07 Score=88.40 Aligned_cols=95 Identities=14% Similarity=0.064 Sum_probs=76.5
Q ss_pred ccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+|+|..+.+.++. .++ +|+++|+|+..+++.++|+.++.- .+++++.+|+.+++... ..++||+|++|.|.
T Consensus 98 ~G~G~la~~la~~~p~~-~v~~VEidp~vi~~Ar~~~~~~~~-----~rv~v~~~Da~~~l~~~--~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 98 GGACTMARYFADVYPQS-RNTVVELDAELARLSREWFDIPRA-----PRVKIRVDDARMVAESF--TPASRDVIIRDVFA 169 (317)
T ss_dssp CGGGHHHHHHHHHSTTC-EEEEEESCHHHHHHHHHHSCCCCT-----TTEEEEESCHHHHHHTC--CTTCEEEEEECCST
T ss_pred CCcCHHHHHHHHHCCCc-EEEEEECCHHHHHHHHHhccccCC-----CceEEEECcHHHHHhhc--cCCCCCEEEECCCC
Confidence 6899998888874 355 899999999999999999875432 47899999999998653 23589999999753
Q ss_pred C---C-----HHHHHHHHHhcccCCEEEEEec
Q 019408 81 S---D-----SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 s---p-----~~fld~al~~v~~gGlL~vt~T 104 (341)
. + ..|+..+.+.|++||+|.+...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 2 2 4788999999999999998553
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.8e-08 Score=93.93 Aligned_cols=88 Identities=25% Similarity=0.132 Sum_probs=71.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||++++.+|+ .||++|+++|.|+ .++.+++|++.|++. ++++++++|+.++ .-+++||+|+-+++|.
T Consensus 92 ~GtGiLs~~Aa~-aGA~~V~ave~s~-~~~~a~~~~~~n~~~----~~i~~i~~~~~~~-----~lpe~~DvivsE~~~~ 160 (376)
T 4hc4_A 92 AGTGILSIFCAQ-AGARRVYAVEASA-IWQQAREVVRFNGLE----DRVHVLPGPVETV-----ELPEQVDAIVSEWMGY 160 (376)
T ss_dssp CTTSHHHHHHHH-TTCSEEEEEECST-THHHHHHHHHHTTCT----TTEEEEESCTTTC-----CCSSCEEEEECCCCBT
T ss_pred CCccHHHHHHHH-hCCCEEEEEeChH-HHHHHHHHHHHcCCC----ceEEEEeeeeeee-----cCCccccEEEeecccc
Confidence 799999999988 7999999999997 679999999999985 6899999998764 2257899999988543
Q ss_pred C-------HHHHHHHHHhcccCCEEE
Q 019408 82 D-------SSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 82 p-------~~fld~al~~v~~gGlL~ 100 (341)
. ..++.+.-+.|++||++.
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred cccccchhhhHHHHHHhhCCCCceEC
Confidence 1 133444447899999987
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-07 Score=86.35 Aligned_cols=96 Identities=22% Similarity=0.224 Sum_probs=77.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcC--CCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIE--RGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~--~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+|+|..+.+.++..+..+|+++|+|+.+++.+++|+..++ ++ ..+++++.+|+.+++... .++||+|++|++
T Consensus 87 ~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~---~~~v~~~~~D~~~~l~~~---~~~fD~Ii~d~~ 160 (283)
T 2i7c_A 87 GGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYE---DKRVNVFIEDASKFLENV---TNTYDVIIVDSS 160 (283)
T ss_dssp CTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGG---STTEEEEESCHHHHHHHC---CSCEEEEEEECC
T ss_pred CCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccC---CCcEEEEECChHHHHHhC---CCCceEEEEcCC
Confidence 6899999998875456899999999999999999987542 21 146889999999988653 468999999874
Q ss_pred ---CCC-----HHHHHHHHHhcccCCEEEEEe
Q 019408 80 ---GSD-----SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 ---gsp-----~~fld~al~~v~~gGlL~vt~ 103 (341)
+.+ ..|++.+.+.|++||+|++..
T Consensus 161 ~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 161 DPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp CTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 211 478889999999999999854
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.2e-08 Score=89.98 Aligned_cols=100 Identities=19% Similarity=0.183 Sum_probs=73.5
Q ss_pred CccccHhHHHHhhh--CCCCEEEEeeCCHHHHHHHHHHHHHc---CCCCCCCcc-------------------------E
Q 019408 1 MCGCGIRSLRYLAE--AKADFVMANDGNDAHRRVILGNLKSI---ERGSGDEKR-------------------------W 50 (341)
Q Consensus 1 fagsG~rgir~a~e--~ga~~V~~~Dis~~A~~~i~~N~~~n---~~~~~~~~~-------------------------~ 50 (341)
.||||..++.++.. .+..+|+++|+|+.+++.+++|+..+ ++. .+ +
T Consensus 59 gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v 134 (250)
T 1o9g_A 59 CCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLT----ARELERREQSERFGKPSYLEAAQAARRL 134 (250)
T ss_dssp TCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHH----HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhcccc----ccchhhhhhhhhcccccchhhhhhhhhh
Confidence 48999999999875 23468999999999999999999876 442 11 4
Q ss_pred E-------------EEeccHHHHHHHh-hhcCCcccEEEeCC-CCCC------------HHHHHHHHHhcccCCEEEEEe
Q 019408 51 V-------------VTHFDANRVLSEC-YLKREFFDLIDIDS-FGSD------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 51 ~-------------v~~~DA~~~l~~~-~~~~~~fDvIdlDP-ygsp------------~~fld~al~~v~~gGlL~vt~ 103 (341)
+ +.++|+.+.+... ...+.+||+|+.+| |... ..++..+.+.|++||+|+++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 214 (250)
T 1o9g_A 135 RERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTD 214 (250)
T ss_dssp HHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeC
Confidence 4 7888987643210 00234799999998 5421 167788889999999999844
Q ss_pred c
Q 019408 104 T 104 (341)
Q Consensus 104 T 104 (341)
.
T Consensus 215 ~ 215 (250)
T 1o9g_A 215 R 215 (250)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.53 E-value=5.6e-08 Score=90.28 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=64.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc-------C-CCCCCCccEEEEeccHHHHHHHhhhcCCccc
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI-------E-RGSGDEKRWVVTHFDANRVLSECYLKREFFD 72 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n-------~-~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fD 72 (341)
+||+|..++.+|+ +|+ +|+++|+|+..++++++|++.. + +. .+++++++|+.++|.... ..||
T Consensus 96 ~~G~G~dal~lA~-~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~----~~i~~~~~D~~~~L~~~~---~~fD 166 (258)
T 2oyr_A 96 TAGLGRDAFVLAS-VGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQ----ERLQLIHASSLTALTDIT---PRPQ 166 (258)
T ss_dssp TCTTCHHHHHHHH-HTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHH----HHEEEEESCHHHHSTTCS---SCCS
T ss_pred CCcCCHHHHHHHH-cCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhh----cCEEEEECCHHHHHHhCc---ccCC
Confidence 6899999999998 577 5999999999999999888642 2 21 368999999999886532 3699
Q ss_pred EEEeCC-CCCC--HHHHHHHHHhcccCC
Q 019408 73 LIDIDS-FGSD--SSFLRTVFNAVKRDG 97 (341)
Q Consensus 73 vIdlDP-ygsp--~~fld~al~~v~~gG 97 (341)
+|++|| |..+ ++.+...++.++..+
T Consensus 167 vV~lDP~y~~~~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 167 VVYLDPMFPHKQKSALVKKEMRVFQSLV 194 (258)
T ss_dssp EEEECCCCCCCCC-----HHHHHHHHHS
T ss_pred EEEEcCCCCCcccchHHHHHHHHHHHhh
Confidence 999999 6432 234445556665533
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.6e-07 Score=89.95 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=75.7
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||+|..++.+++.....+|+++|+|+.+++.+++|++.|++. +..++++...|+.+.+ ...+||+|++|| |
T Consensus 230 GcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~--~~~~v~~~~~D~~~~~-----~~~~fD~Ii~nppf 302 (375)
T 4dcm_A 230 GCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCEFMINNALSGV-----EPFRFNAVLCNPPF 302 (375)
T ss_dssp TCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGG--GGGGEEEEECSTTTTC-----CTTCEEEEEECCCC
T ss_pred eCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCC--cCceEEEEechhhccC-----CCCCeeEEEECCCc
Confidence 4899999999998532578999999999999999999999863 1124778999987632 245899999998 5
Q ss_pred CCC--------HHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSD--------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp--------~~fld~al~~v~~gGlL~vt~ 103 (341)
... ..++..+.+.|++||.|++..
T Consensus 303 h~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 303 HQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp -------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 421 146788899999999999854
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=8.4e-08 Score=87.38 Aligned_cols=93 Identities=11% Similarity=0.127 Sum_probs=75.3
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+|||..+|.+++. | +.+|+++|+|+.+++.+++|++.|++. +++++.++|+++.+.. +..||+|++-=-|
T Consensus 24 tGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~----~~i~~~~~d~l~~l~~----~~~~D~IviaG~G 94 (225)
T 3kr9_A 24 SDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLK----EKIQVRLANGLAAFEE----TDQVSVITIAGMG 94 (225)
T ss_dssp CSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCT----TTEEEEECSGGGGCCG----GGCCCEEEEEEEC
T ss_pred CCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC----ceEEEEECchhhhccc----CcCCCEEEEcCCC
Confidence 7999999999995 5 678999999999999999999999985 5799999998765421 2369988874333
Q ss_pred CC--HHHHHHHHHhcccCCEEEEEe
Q 019408 81 SD--SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp--~~fld~al~~v~~gGlL~vt~ 103 (341)
.. ..+++.+...++++|.|.+..
T Consensus 95 g~~i~~Il~~~~~~L~~~~~lVlq~ 119 (225)
T 3kr9_A 95 GRLIARILEEGLGKLANVERLILQP 119 (225)
T ss_dssp HHHHHHHHHHTGGGCTTCCEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 32 367788888999999999843
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=9.1e-08 Score=87.85 Aligned_cols=88 Identities=15% Similarity=0.063 Sum_probs=72.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||..++.+++ .|+ +|+++|+|+.+++.+++|++.|++ . +++.++|+.+.+. ..+||+|+.++...
T Consensus 129 cG~G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~n~~~~~~-----~-v~~~~~d~~~~~~-----~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 129 TGSGVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGV-----R-PRFLEGSLEAALP-----FGPFDLLVANLYAE 195 (254)
T ss_dssp CTTSHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTC-----C-CEEEESCHHHHGG-----GCCEEEEEEECCHH
T ss_pred CCCcHHHHHHHH-hCC-eEEEEECCHHHHHHHHHHHHHcCC-----c-EEEEECChhhcCc-----CCCCCEEEECCcHH
Confidence 799999999887 688 999999999999999999999987 3 6788999987531 34799999987321
Q ss_pred -CHHHHHHHHHhcccCCEEEEE
Q 019408 82 -DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 -p~~fld~al~~v~~gGlL~vt 102 (341)
...++..+.+.+++||.|+++
T Consensus 196 ~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 196 LHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCEEEEE
Confidence 235667788899999999984
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=6.1e-08 Score=87.20 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=70.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||+|..++.++. .| .+|+++|+|+.+++.+++|++.+++. .+++++++|+.++.. ...||+|++|| |
T Consensus 86 gcG~G~~~~~la~-~~-~~v~~vD~s~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~~-----~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 86 FCGVGGNTIQFAL-TG-MRVIAIDIDPVKIALARNNAEVYGIA----DKIEFICGDFLLLAS-----FLKADVVFLSPPW 154 (241)
T ss_dssp TCTTSHHHHHHHH-TT-CEEEEEESCHHHHHHHHHHHHHTTCG----GGEEEEESCHHHHGG-----GCCCSEEEECCCC
T ss_pred ccccCHHHHHHHH-cC-CEEEEEECCHHHHHHHHHHHHHcCCC----cCeEEEECChHHhcc-----cCCCCEEEECCCc
Confidence 4899999999998 56 78999999999999999999999873 478999999998752 35899999999 6
Q ss_pred CCCHH---HHHHHHHhcccCCEEEE
Q 019408 80 GSDSS---FLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 80 gsp~~---fld~al~~v~~gGlL~v 101 (341)
..... .+....+.+++||++.+
T Consensus 155 ~~~~~~~~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 155 GGPDYATAETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp SSGGGGGSSSBCTTTSCSSCHHHHH
T ss_pred CCcchhhhHHHHHHhhcCCcceeHH
Confidence 54311 12233456788888665
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.6e-07 Score=91.82 Aligned_cols=96 Identities=7% Similarity=0.075 Sum_probs=70.7
Q ss_pred CccccHhHHHHhhhCCC---------------------------------------CEEEEeeCCHHHHHHHHHHHHHcC
Q 019408 1 MCGCGIRSLRYLAEAKA---------------------------------------DFVMANDGNDAHRRVILGNLKSIE 41 (341)
Q Consensus 1 fagsG~rgir~a~e~ga---------------------------------------~~V~~~Dis~~A~~~i~~N~~~n~ 41 (341)
|||||.+.|++|.- +. .+|+++|+|+.+++.+++|++.++
T Consensus 202 ~CGSGt~lIEAa~~-a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~g 280 (384)
T 3ldg_A 202 TCGSGTFCIEAAMI-GMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVG 280 (384)
T ss_dssp TCTTSHHHHHHHHH-HTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHH-hcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcC
Confidence 79999999999973 32 259999999999999999999999
Q ss_pred CCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCCCH-------HHHHHHHHhcc--cCCEEEEEecCC
Q 019408 42 RGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FGSDS-------SFLRTVFNAVK--RDGLLYLTSTDG 106 (341)
Q Consensus 42 ~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygsp~-------~fld~al~~v~--~gGlL~vt~TD~ 106 (341)
+. +.+++.++|+.++.. ...||+|+.|| ||.-. .+....-+.++ +||-+++-++|.
T Consensus 281 l~----~~I~~~~~D~~~l~~-----~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 346 (384)
T 3ldg_A 281 LE----DVVKLKQMRLQDFKT-----NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDT 346 (384)
T ss_dssp CT----TTEEEEECCGGGCCC-----CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCT
T ss_pred CC----CceEEEECChHHCCc-----cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCH
Confidence 85 568999999987532 34799999999 87421 12222223344 377777655443
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.51 E-value=2e-07 Score=86.11 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=77.0
Q ss_pred CccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 1 MCGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 1 fagsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
.||||..++.+++..+ ..+|+++|+|+.+++.+++|++.+++. .++++.++|+.+.+ ....||+|++||.
T Consensus 120 G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~-----~~~~~D~V~~~~~ 190 (277)
T 1o54_A 120 GVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI----ERVTIKVRDISEGF-----DEKDVDALFLDVP 190 (277)
T ss_dssp CCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG----GGEEEECCCGGGCC-----SCCSEEEEEECCS
T ss_pred CCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC----CCEEEEECCHHHcc-----cCCccCEEEECCc
Confidence 3799999999988534 578999999999999999999988873 46889999987652 2347999999983
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
. +..+++.+.+.|++||.|++..
T Consensus 191 ~-~~~~l~~~~~~L~pgG~l~~~~ 213 (277)
T 1o54_A 191 D-PWNYIDKCWEALKGGGRFATVC 213 (277)
T ss_dssp C-GGGTHHHHHHHEEEEEEEEEEE
T ss_pred C-HHHHHHHHHHHcCCCCEEEEEe
Confidence 2 4478899999999999999854
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.50 E-value=2.5e-07 Score=79.13 Aligned_cols=91 Identities=15% Similarity=0.205 Sum_probs=74.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCc-cEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEK-RWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~-~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||+|..++.++.. ..+|+++|+|+.+++.+++|++.+++. + ++++.+.|+.+.+. ...||+|+++| |
T Consensus 61 ~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~~~~-----~~~~D~v~~~~~~ 129 (194)
T 1dus_A 61 CGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLD----NYDIRVVHSDLYENVK-----DRKYNKIITNPPI 129 (194)
T ss_dssp CTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCT----TSCEEEEECSTTTTCT-----TSCEEEEEECCCS
T ss_pred CCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECchhcccc-----cCCceEEEECCCc
Confidence 7999999999884 568999999999999999999988873 2 38899999876432 45799999998 5
Q ss_pred CCC----HHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSD----SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp----~~fld~al~~v~~gGlL~vt~ 103 (341)
... ..+++.+.+.|++||.++++.
T Consensus 130 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 157 (194)
T 1dus_A 130 RAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp TTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccchhHHHHHHHHHHHHcCCCCEEEEEE
Confidence 431 356778888999999999854
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-07 Score=82.21 Aligned_cols=92 Identities=11% Similarity=0.061 Sum_probs=77.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||+|..++.++...+..+|+++|+|+.+++.+++|++.+++. .+++.++|+.++. ....||+|+...+..
T Consensus 74 ~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~-----~~~~~D~i~~~~~~~ 143 (207)
T 1jsx_A 74 TGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-----NIEPVQSRVEEFP-----SEPPFDGVISRAFAS 143 (207)
T ss_dssp CTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-----SEEEEECCTTTSC-----CCSCEEEEECSCSSS
T ss_pred CCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CeEEEecchhhCC-----ccCCcCEEEEeccCC
Confidence 799999999987544568999999999999999999998873 4889999997643 235799999988776
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
...+++.+.+.|++||.+++..
T Consensus 144 ~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 144 LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp HHHHHHHHTTSEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEe
Confidence 6678889999999999999853
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.8e-07 Score=83.56 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=76.9
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||+|..++.++...+ ..+|+++|+|+.+++.+++|++.+++. +++++.++|+.+.+ ....||+|++||-.
T Consensus 102 ~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~-----~~~~~D~v~~~~~~ 172 (255)
T 3mb5_A 102 VGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD----DRVTIKLKDIYEGI-----EEENVDHVILDLPQ 172 (255)
T ss_dssp CTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT----TTEEEECSCGGGCC-----CCCSEEEEEECSSC
T ss_pred CCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC----CceEEEECchhhcc-----CCCCcCEEEECCCC
Confidence 799999999988523 678999999999999999999999874 45899999998542 23579999999833
Q ss_pred CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+++.+.+.|++||.+++..
T Consensus 173 -~~~~l~~~~~~L~~gG~l~~~~ 194 (255)
T 3mb5_A 173 -PERVVEHAAKALKPGGFFVAYT 194 (255)
T ss_dssp -GGGGHHHHHHHEEEEEEEEEEE
T ss_pred -HHHHHHHHHHHcCCCCEEEEEE
Confidence 3468999999999999999854
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-07 Score=86.71 Aligned_cols=130 Identities=12% Similarity=0.112 Sum_probs=93.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|||..+|.++++..+.+|+++|+|+.+++.+++|++.|++. +++++.++|+.+.+.. ++.||+|++-=-|.
T Consensus 30 tGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~----~~I~~~~gD~l~~~~~----~~~~D~IviaGmGg 101 (230)
T 3lec_A 30 SDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT----SKIDVRLANGLSAFEE----ADNIDTITICGMGG 101 (230)
T ss_dssp CSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCT----TTEEEEECSGGGGCCG----GGCCCEEEEEEECH
T ss_pred CchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEECchhhcccc----ccccCEEEEeCCch
Confidence 799999999998522678999999999999999999999985 6799999998876532 23699998755443
Q ss_pred --CHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEe
Q 019408 82 --DSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFS 159 (341)
Q Consensus 82 --p~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s 159 (341)
-..+++.+...++++|.|.+.. .. + ...+.+...++|..|.=-.-
T Consensus 102 ~lI~~IL~~~~~~l~~~~~lIlqp--------~~---------------------~----~~~lr~~L~~~Gf~i~~E~l 148 (230)
T 3lec_A 102 RLIADILNNDIDKLQHVKTLVLQP--------NN---------------------R----EDDLRKWLAANDFEIVAEDI 148 (230)
T ss_dssp HHHHHHHHHTGGGGTTCCEEEEEE--------SS---------------------C----HHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCcCCEEEEEC--------CC---------------------C----hHHHHHHHHHCCCEEEEEEE
Confidence 2366778888899999998733 11 1 23444555667766655333
Q ss_pred cccCCCCeEEEEEE
Q 019408 160 YYSYHGPVFRVMLR 173 (341)
Q Consensus 160 ~~~~~dhy~Rv~vr 173 (341)
.. ..++||.+++-
T Consensus 149 v~-e~~~~Yeii~~ 161 (230)
T 3lec_A 149 LT-ENDKRYEILVV 161 (230)
T ss_dssp EE-C--CEEEEEEE
T ss_pred EE-ECCEEEEEEEE
Confidence 22 36889988654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-07 Score=90.64 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=70.3
Q ss_pred CccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
+||||..+++++. .+. .+|+++|+|+.+++.+++|++.+++. +.+++.++|+.++.. ....||+|+.||
T Consensus 225 gCGsG~~~i~~a~-~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~----~~i~~~~~D~~~~~~----~~~~fD~Ii~npP 295 (373)
T 3tm4_A 225 MCGSGTILIELAL-RRYSGEIIGIEKYRKHLIGAEMNALAAGVL----DKIKFIQGDATQLSQ----YVDSVDFAISNLP 295 (373)
T ss_dssp TCTTCHHHHHHHH-TTCCSCEEEEESCHHHHHHHHHHHHHTTCG----GGCEEEECCGGGGGG----TCSCEEEEEEECC
T ss_pred cCcCcHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHHcCCC----CceEEEECChhhCCc----ccCCcCEEEECCC
Confidence 6899999999998 454 37999999999999999999999884 578899999987532 235799999998
Q ss_pred CCCC-----------HHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGSD-----------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp-----------~~fld~al~~v~~gGlL~vt~ 103 (341)
||.- ..+++.+.+.+ .|+++.+++
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~ 330 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITT 330 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE-EEEEEEEES
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEEC
Confidence 7742 23445555556 455555533
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.49 E-value=2.8e-07 Score=83.72 Aligned_cols=99 Identities=14% Similarity=0.174 Sum_probs=74.6
Q ss_pred CccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHc--------CCCCCCCccEEEEeccHHHHHHHhhhcCCcc
Q 019408 1 MCGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSI--------ERGSGDEKRWVVTHFDANRVLSECYLKREFF 71 (341)
Q Consensus 1 fagsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n--------~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~f 71 (341)
.||+|..++.++.. +. ..|+++|+|+.+++.+++|++.+ ++ .+++++++|+.+.|.... ....+
T Consensus 57 GcG~G~~~~~la~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-----~nv~~~~~D~~~~l~~~~-~~~~~ 129 (246)
T 2vdv_E 57 GCGFGGLMIDLSPA-FPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-----QNINVLRGNAMKFLPNFF-EKGQL 129 (246)
T ss_dssp TCTTSHHHHHHHHH-STTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-----TTEEEEECCTTSCGGGTS-CTTCE
T ss_pred cCCCCHHHHHHHHh-CCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-----CcEEEEeccHHHHHHHhc-ccccc
Confidence 48999999999984 54 48999999999999999999987 65 368899999987654322 23467
Q ss_pred cEEEe---CCCCCC---------HHHHHHHHHhcccCCEEEEEecCCC
Q 019408 72 DLIDI---DSFGSD---------SSFLRTVFNAVKRDGLLYLTSTDGY 107 (341)
Q Consensus 72 DvIdl---DPygsp---------~~fld~al~~v~~gGlL~vt~TD~~ 107 (341)
|.|++ ||+-.. ..++..+.+.|++||+|.+ .||..
T Consensus 130 d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~-~td~~ 176 (246)
T 2vdv_E 130 SKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT-ITDVK 176 (246)
T ss_dssp EEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEE-EESCH
T ss_pred CEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEE-EeccH
Confidence 76643 343110 3789999999999999998 55543
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-07 Score=91.49 Aligned_cols=71 Identities=17% Similarity=0.159 Sum_probs=60.2
Q ss_pred CccccHhHHHHhhhCCC---------------------------------------CEEEEeeCCHHHHHHHHHHHHHcC
Q 019408 1 MCGCGIRSLRYLAEAKA---------------------------------------DFVMANDGNDAHRRVILGNLKSIE 41 (341)
Q Consensus 1 fagsG~rgir~a~e~ga---------------------------------------~~V~~~Dis~~A~~~i~~N~~~n~ 41 (341)
|||||.+.|++|.- ++ .+|+.+|+|+.+++.+++|++.++
T Consensus 203 ~CGSGt~lieaa~~-~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~g 281 (385)
T 3ldu_A 203 MCGSGTILIEAAMI-GINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAG 281 (385)
T ss_dssp TCTTCHHHHHHHHH-HTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH-HhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcC
Confidence 79999999999874 32 369999999999999999999999
Q ss_pred CCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCC
Q 019408 42 RGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FGS 81 (341)
Q Consensus 42 ~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygs 81 (341)
+. +.+++.++|+.++.. ...||+|+.|| ||.
T Consensus 282 l~----~~i~~~~~D~~~l~~-----~~~~D~Iv~NPPyg~ 313 (385)
T 3ldu_A 282 VD----EYIEFNVGDATQFKS-----EDEFGFIITNPPYGE 313 (385)
T ss_dssp CG----GGEEEEECCGGGCCC-----SCBSCEEEECCCCCC
T ss_pred CC----CceEEEECChhhcCc-----CCCCcEEEECCCCcC
Confidence 84 578999999987532 35799999999 874
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=6e-07 Score=84.75 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=75.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc--CCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI--ERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n--~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+|+|..+.+.++..+..+|+++|+|+.+++.+++|+... +.. ..+++++.+|+.+++... ..++||+|++|++
T Consensus 104 ~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~---~~~v~~~~~D~~~~~~~~--~~~~fDvIi~d~~ 178 (304)
T 3bwc_A 104 GGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLA---DPRATVRVGDGLAFVRQT--PDNTYDVVIIDTT 178 (304)
T ss_dssp CTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG---CTTEEEEESCHHHHHHSS--CTTCEEEEEEECC
T ss_pred CCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccC---CCcEEEEECcHHHHHHhc--cCCceeEEEECCC
Confidence 689999999987445689999999999999999998531 111 146889999999987531 2458999999983
Q ss_pred CC--C------HHHHHHHHHhcccCCEEEEEe
Q 019408 80 GS--D------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gs--p------~~fld~al~~v~~gGlL~vt~ 103 (341)
-. | ..|+..+.+.|++||+|++..
T Consensus 179 ~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 210 (304)
T 3bwc_A 179 DPAGPASKLFGEAFYKDVLRILKPDGICCNQG 210 (304)
T ss_dssp ---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 21 1 478888999999999999864
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3.4e-07 Score=83.03 Aligned_cols=91 Identities=16% Similarity=0.061 Sum_probs=73.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|+|..+..+++ .+..+|+.+|+|+..++.++++.+..+. .++++.+|+..++... ....||.|+.|++.+
T Consensus 69 ~G~G~~~~~~~~-~~~~~v~~id~~~~~~~~a~~~~~~~~~------~~~~~~~~a~~~~~~~--~~~~FD~i~~D~~~~ 139 (236)
T 3orh_A 69 FGMAIAASKVQE-APIDEHWIIECNDGVFQRLRDWAPRQTH------KVIPLKGLWEDVAPTL--PDGHFDGILYDTYPL 139 (236)
T ss_dssp CTTSHHHHHHTT-SCEEEEEEEECCHHHHHHHHHHGGGCSS------EEEEEESCHHHHGGGS--CTTCEEEEEECCCCC
T ss_pred CCccHHHHHHHH-hCCcEEEEEeCCHHHHHHHHHHHhhCCC------ceEEEeehHHhhcccc--cccCCceEEEeeeec
Confidence 689998888876 5567899999999999999999987654 5778999999887543 345799999999643
Q ss_pred ---------CHHHHHHHHHhcccCCEEEE
Q 019408 82 ---------DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 ---------p~~fld~al~~v~~gGlL~v 101 (341)
+..+++.+.+.||+||.|.+
T Consensus 140 ~~~~~~~~~~~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 140 SEETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp BGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred ccchhhhcchhhhhhhhhheeCCCCEEEE
Confidence 12456778899999999986
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.5e-07 Score=90.71 Aligned_cols=71 Identities=10% Similarity=0.183 Sum_probs=59.8
Q ss_pred CccccHhHHHHhhhCCC---------------------------------------CEEEEeeCCHHHHHHHHHHHHHcC
Q 019408 1 MCGCGIRSLRYLAEAKA---------------------------------------DFVMANDGNDAHRRVILGNLKSIE 41 (341)
Q Consensus 1 fagsG~rgir~a~e~ga---------------------------------------~~V~~~Dis~~A~~~i~~N~~~n~ 41 (341)
|||||.+.|++|.- +. .+|+++|+|+.+++.+++|++.++
T Consensus 209 ~CGSGt~~ieaa~~-~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~g 287 (393)
T 3k0b_A 209 VCGSGTIPIEAALI-GQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAG 287 (393)
T ss_dssp TCTTSHHHHHHHHH-HTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHH-hcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHcC
Confidence 79999999999974 32 359999999999999999999999
Q ss_pred CCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCC
Q 019408 42 RGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FGS 81 (341)
Q Consensus 42 ~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygs 81 (341)
+. +.+++.++|+.++.. ...||+|+.|| ||.
T Consensus 288 l~----~~I~~~~~D~~~~~~-----~~~fD~Iv~NPPYg~ 319 (393)
T 3k0b_A 288 LG----DLITFRQLQVADFQT-----EDEYGVVVANPPYGE 319 (393)
T ss_dssp CT----TCSEEEECCGGGCCC-----CCCSCEEEECCCCCC
T ss_pred CC----CceEEEECChHhCCC-----CCCCCEEEECCCCcc
Confidence 84 468899999987532 34799999998 875
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.43 E-value=2e-07 Score=85.88 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=74.4
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||||..+|.++++ | +.+|+++|+|+.+++.+++|++.|++. +++++.++|..+.+.. ++.||+|++-=-|
T Consensus 30 tGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~----~~I~v~~gD~l~~~~~----~~~~D~IviagmG 100 (244)
T 3gnl_A 30 SDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGLT----EQIDVRKGNGLAVIEK----KDAIDTIVIAGMG 100 (244)
T ss_dssp CSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCT----TTEEEEECSGGGGCCG----GGCCCEEEEEEEC
T ss_pred CccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC----ceEEEEecchhhccCc----cccccEEEEeCCc
Confidence 7999999999985 5 678999999999999999999999985 5799999998875531 2369999874333
Q ss_pred C--CHHHHHHHHHhcccCCEEEEE
Q 019408 81 S--DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 s--p~~fld~al~~v~~gGlL~vt 102 (341)
. -..+++.+...+++++.|.+.
T Consensus 101 g~lI~~IL~~~~~~L~~~~~lIlq 124 (244)
T 3gnl_A 101 GTLIRTILEEGAAKLAGVTKLILQ 124 (244)
T ss_dssp HHHHHHHHHHTGGGGTTCCEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEE
Confidence 2 236677888888889998883
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.42 E-value=5.7e-07 Score=85.45 Aligned_cols=72 Identities=13% Similarity=-0.027 Sum_probs=58.1
Q ss_pred CccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
.||+|..++.+|.. .+..+|+++|+|+..++.+++|++.+++. +++++++|+.++.... .....||.|++||
T Consensus 110 caG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-----~v~~~~~D~~~~~~~~-~~~~~fD~Vl~D~ 182 (309)
T 2b9e_A 110 CAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-----CCELAEEDFLAVSPSD-PRYHEVHYILLDP 182 (309)
T ss_dssp SCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEECCGGGSCTTC-GGGTTEEEEEECC
T ss_pred CCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEeCChHhcCccc-cccCCCCEEEEcC
Confidence 48999999999875 34578999999999999999999999883 6889999997653211 0114699999998
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.42 E-value=5.6e-07 Score=80.82 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=75.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||+|..++.+++. ..+|+++|+|+.+++.+++|++.+++. .++++.+.|+.+.+ .....||+|++||- .
T Consensus 100 ~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~----~~~~~~D~v~~~~~-~ 168 (248)
T 2yvl_A 100 TGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLG----KNVKFFNVDFKDAE----VPEGIFHAAFVDVR-E 168 (248)
T ss_dssp CTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCC----TTEEEECSCTTTSC----CCTTCBSEEEECSS-C
T ss_pred CCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCC----CcEEEEEcChhhcc----cCCCcccEEEECCc-C
Confidence 7999999999984 568999999999999999999988873 46788999987632 12357999999984 3
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+++.+.+.|++||.+++..
T Consensus 169 ~~~~l~~~~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 169 PWHYLEKVHKSLMEGAPVGFLL 190 (248)
T ss_dssp GGGGHHHHHHHBCTTCEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEe
Confidence 4578899999999999999854
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.3e-06 Score=72.51 Aligned_cols=88 Identities=18% Similarity=0.165 Sum_probs=71.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||+|..++.++. ...+|+++|+|+.+++.+++|++.+++. ++++.++|+.+.+. ...||+|++++...
T Consensus 44 ~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~~~~~~d~~~~~~-----~~~~D~i~~~~~~~ 111 (183)
T 2yxd_A 44 CGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIK-----NCQIIKGRAEDVLD-----KLEFNKAFIGGTKN 111 (183)
T ss_dssp CCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCC-----SEEEEESCHHHHGG-----GCCCSEEEECSCSC
T ss_pred CCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCC-----cEEEEECCcccccc-----CCCCcEEEECCccc
Confidence 799999999987 5578999999999999999999998873 68899999987432 24799999998533
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
+..++..+.+. +||.++++.
T Consensus 112 ~~~~l~~~~~~--~gG~l~~~~ 131 (183)
T 2yxd_A 112 IEKIIEILDKK--KINHIVANT 131 (183)
T ss_dssp HHHHHHHHHHT--TCCEEEEEE
T ss_pred HHHHHHHHhhC--CCCEEEEEe
Confidence 44566665555 999999854
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.40 E-value=3e-07 Score=87.93 Aligned_cols=94 Identities=17% Similarity=0.156 Sum_probs=74.9
Q ss_pred CccccHhHHHHhhhCCC-----CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEE
Q 019408 1 MCGCGIRSLRYLAEAKA-----DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLID 75 (341)
Q Consensus 1 fagsG~rgir~a~e~ga-----~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvId 75 (341)
.||||.+.+.++..... .+|+++|+|+.++++++.|+..+++ .+.+.++|+.... ...+||+|+
T Consensus 138 ~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~------~~~i~~~D~l~~~-----~~~~fD~Ii 206 (344)
T 2f8l_A 138 ACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ------KMTLLHQDGLANL-----LVDPVDVVI 206 (344)
T ss_dssp TCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC------CCEEEESCTTSCC-----CCCCEEEEE
T ss_pred CCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC------CceEEECCCCCcc-----ccCCccEEE
Confidence 38999999999875221 5799999999999999999998876 3568899986521 235799999
Q ss_pred eCC-CCCC---------------------HHHHHHHHHhcccCCEEEEEecC
Q 019408 76 IDS-FGSD---------------------SSFLRTVFNAVKRDGLLYLTSTD 105 (341)
Q Consensus 76 lDP-ygsp---------------------~~fld~al~~v~~gGlL~vt~TD 105 (341)
.+| ||.- ..|+..+++.|++||.+++..++
T Consensus 207 ~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~ 258 (344)
T 2f8l_A 207 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 258 (344)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred ECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence 998 6531 15889999999999999986653
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.40 E-value=7.3e-08 Score=84.55 Aligned_cols=89 Identities=17% Similarity=0.087 Sum_probs=71.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++.++. .+..+|+++|+|+.+++.+++|++.+++. .+++.++|+.... ...||+|+.++ +.
T Consensus 69 ~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~------~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 69 TGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIY-----DIALQKTSLLADV------DGKFDLIVANILAE 136 (205)
T ss_dssp CTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCC-----CCEEEESSTTTTC------CSCEEEEEEESCHH
T ss_pred CCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEeccccccC------CCCceEEEECCcHH
Confidence 799999999876 67889999999999999999999998874 3788999986532 35899999998 11
Q ss_pred CCHHHHHHHHHhcccCCEEEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt 102 (341)
....++..+.+.|++||.|+++
T Consensus 137 ~~~~~l~~~~~~L~~gG~l~~~ 158 (205)
T 3grz_A 137 ILLDLIPQLDSHLNEDGQVIFS 158 (205)
T ss_dssp HHHHHGGGSGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEE
Confidence 1123345556789999999984
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.38 E-value=8.3e-07 Score=82.56 Aligned_cols=100 Identities=18% Similarity=0.172 Sum_probs=67.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeC-CHHHHHHHHHHHHHc-----CCCCCCCccEEEEecc----HHHHHHHhhhcCCcc
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDG-NDAHRRVILGNLKSI-----ERGSGDEKRWVVTHFD----ANRVLSECYLKREFF 71 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Di-s~~A~~~i~~N~~~n-----~~~~~~~~~~~v~~~D----A~~~l~~~~~~~~~f 71 (341)
||||..++.+++ .|+.+|+++|+ |+.+++.+++|++.| ++..+...++++...| ...+.... ....|
T Consensus 88 ~G~G~~~~~~a~-~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~f 164 (281)
T 3bzb_A 88 AGAGLVSIVAFL-AGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCT--GLQRF 164 (281)
T ss_dssp CTTSHHHHHHHH-TTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHH--SCSSB
T ss_pred ccccHHHHHHHH-cCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhc--cCCCC
Confidence 799999998887 58889999999 899999999999544 3310000145666333 22332211 24579
Q ss_pred cEEEe-CC-CCC--CHHHHHHHHHhcc---c--CCEEEEEec
Q 019408 72 DLIDI-DS-FGS--DSSFLRTVFNAVK---R--DGLLYLTST 104 (341)
Q Consensus 72 DvIdl-DP-ygs--p~~fld~al~~v~---~--gGlL~vt~T 104 (341)
|+|++ |+ |.. ...++..+.++|+ + ||.+++..+
T Consensus 165 D~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~ 206 (281)
T 3bzb_A 165 QVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFT 206 (281)
T ss_dssp SEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred CEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence 99987 98 433 2356777778899 8 998887554
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.37 E-value=5.7e-07 Score=88.84 Aligned_cols=95 Identities=23% Similarity=0.267 Sum_probs=74.9
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||+|..++..+...+..+|+++|+|+..++.+++|++.+++ .++++++|+..+.... .+..||+|++|| +
T Consensus 254 gaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~------~~~~~~~D~~~~~~~~--~~~~fD~Vl~D~Pc 325 (429)
T 1sqg_A 254 CAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM------KATVKQGDGRYPSQWC--GEQQFDRILLDAPC 325 (429)
T ss_dssp SCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC------CCEEEECCTTCTHHHH--TTCCEEEEEEECCC
T ss_pred CCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC------CeEEEeCchhhchhhc--ccCCCCEEEEeCCC
Confidence 389999999998753336899999999999999999999887 2578899987764322 235799999998 3
Q ss_pred -CC------C------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 80 -GS------D------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 -gs------p------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
|+ | ..+++.+.+.|++||.|.+ +|
T Consensus 326 sg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvy-st 374 (429)
T 1sqg_A 326 SATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVY-AT 374 (429)
T ss_dssp CCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEE-EE
T ss_pred CcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE-EE
Confidence 21 1 2567889999999999987 45
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-07 Score=85.88 Aligned_cols=76 Identities=11% Similarity=0.025 Sum_probs=58.6
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHH-HHHhhhc-CCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV-LSECYLK-REFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~-l~~~~~~-~~~fDvIdlDP 78 (341)
.||||..++.++......+|+++|+|+.+++.+++|++.+++. ++++++++|+.+. +...... ...||+|+.||
T Consensus 73 G~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~np 148 (254)
T 2h00_A 73 GTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS----DLIKVVKVPQKTLLMDALKEESEIIYDFCMCNP 148 (254)
T ss_dssp SCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEECCTTCSSTTTSTTCCSCCBSEEEECC
T ss_pred CCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCC----ccEEEEEcchhhhhhhhhhcccCCcccEEEECC
Confidence 3799999999987532468999999999999999999999884 4689999998652 2212111 14799999998
Q ss_pred -CC
Q 019408 79 -FG 80 (341)
Q Consensus 79 -yg 80 (341)
|.
T Consensus 149 p~~ 151 (254)
T 2h00_A 149 PFF 151 (254)
T ss_dssp CCC
T ss_pred CCc
Confidence 54
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.35 E-value=8.8e-07 Score=81.81 Aligned_cols=91 Identities=11% Similarity=0.123 Sum_probs=75.0
Q ss_pred ccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHc-CCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 2 CGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSI-ERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n-~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
||+|..++.++.. ....+|+++|+|+.+++.+++|++.+ +. .++++.++|+.+.+ ....||+|++|+.
T Consensus 119 ~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-----~~v~~~~~d~~~~~-----~~~~fD~Vi~~~~ 188 (275)
T 1yb2_A 119 VGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-----GNVRTSRSDIADFI-----SDQMYDAVIADIP 188 (275)
T ss_dssp CTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-----TTEEEECSCTTTCC-----CSCCEEEEEECCS
T ss_pred CCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-----CcEEEEECchhccC-----cCCCccEEEEcCc
Confidence 7999999999874 23568999999999999999999988 75 36888999987622 2357999999984
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
. +..+++.+.+.|++||.|++..
T Consensus 189 ~-~~~~l~~~~~~LkpgG~l~i~~ 211 (275)
T 1yb2_A 189 D-PWNHVQKIASMMKPGSVATFYL 211 (275)
T ss_dssp C-GGGSHHHHHHTEEEEEEEEEEE
T ss_pred C-HHHHHHHHHHHcCCCCEEEEEe
Confidence 3 3478899999999999999844
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.33 E-value=4.8e-06 Score=74.61 Aligned_cols=92 Identities=16% Similarity=0.083 Sum_probs=71.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||+|..++.++...|..+|+++|+|+.+++.+++|++.+ .+++++.+|+......... ...||+|+.|+..
T Consensus 83 cG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~~v~~~~~d~~~~~~~~~~-~~~~D~v~~~~~~- 153 (230)
T 1fbn_A 83 ASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-------ENIIPILGDANKPQEYANI-VEKVDVIYEDVAQ- 153 (230)
T ss_dssp CCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-------TTEEEEECCTTCGGGGTTT-SCCEEEEEECCCS-
T ss_pred ccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-------CCeEEEECCCCCccccccc-CccEEEEEEecCC-
Confidence 799999999988546678999999999999999998755 2577889998752110111 2579999999732
Q ss_pred C---HHHHHHHHHhcccCCEEEEE
Q 019408 82 D---SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p---~~fld~al~~v~~gGlL~vt 102 (341)
+ ..++..+.+.|++||.++++
T Consensus 154 ~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 154 PNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHhCCCCcEEEEE
Confidence 3 45688889999999999985
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3.1e-06 Score=74.70 Aligned_cols=162 Identities=12% Similarity=0.016 Sum_probs=96.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..++.++...+..+|+++|+|+.+++.+++|++.+++......++++.++|+.. .......||+|+..- +
T Consensus 38 cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~v~~~~~l~ 113 (217)
T 3jwh_A 38 CGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTY----QDKRFHGYDAATVIEVIE 113 (217)
T ss_dssp CTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTS----CCGGGCSCSEEEEESCGG
T ss_pred CCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccc----ccccCCCcCEEeeHHHHH
Confidence 7999999998874344789999999999999999998777630000168889999732 112235799998654 1
Q ss_pred --CCC--HHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhcccc----CCCCCchhhhHHHHHHHHHHHHHhcC
Q 019408 80 --GSD--SSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYI----LPMPYSNEIGLRMLIGGAVREASAQG 151 (341)
Q Consensus 80 --gsp--~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~----~~~~~~~E~~lR~ll~~i~~~Aa~~~ 151 (341)
..+ ..++..+.+.|++||++.++-.. . -...|...+ .......+.....+...+.+.+.++|
T Consensus 114 ~~~~~~~~~~l~~~~~~LkpgG~li~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~G 183 (217)
T 3jwh_A 114 HLDLSRLGAFERVLFEFAQPKIVIVTTPNI------E----YNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFA 183 (217)
T ss_dssp GCCHHHHHHHHHHHHTTTCCSEEEEEEEBH------H----HHHHTC-----------CCSCBCHHHHHHHHHHHHHHSS
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEccCc------c----cchhhcccccccccccccccccCHHHHHHHHHHHHHHcC
Confidence 112 36677888899999987765320 0 001111111 01122233455566667778888887
Q ss_pred CcEEEEEecc--cCCCCeEEEEEEEEeC
Q 019408 152 YHVSPLFSYY--SYHGPVFRVMLRVHRK 177 (341)
Q Consensus 152 ~~i~Pl~s~~--~~~dhy~Rv~vrv~~~ 177 (341)
..++-.-.-. ...+++..+..-+++|
T Consensus 184 f~v~~~~~g~~~~~~g~~~q~~~~~~~~ 211 (217)
T 3jwh_A 184 YNVQFQPIGEADPEVGSPTQMAVFIHRG 211 (217)
T ss_dssp EEEEECCCSCCCSSSCCSEEEEEEEECC
T ss_pred ceEEEEecCCccCCCCchheeEeeeecc
Confidence 5543221111 1134555555555554
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.31 E-value=3.2e-06 Score=74.55 Aligned_cols=145 Identities=16% Similarity=0.068 Sum_probs=87.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++...+..+|+++|+|+.+++.+++|+..+++......++++.++|+... ......||+|+..-
T Consensus 38 cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~~~~~l~ 113 (219)
T 3jwg_A 38 CGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR----DKRFSGYDAATVIEVIE 113 (219)
T ss_dssp CTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC----CGGGTTCSEEEEESCGG
T ss_pred CCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc----ccccCCCCEEEEHHHHH
Confidence 79999999988743347899999999999999999988776300001678899997321 12235799998543
Q ss_pred -CCCC--HHHHHHHHHhcccCCEEEEEecC-CCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcE
Q 019408 79 -FGSD--SSFLRTVFNAVKRDGLLYLTSTD-GYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHV 154 (341)
Q Consensus 79 -ygsp--~~fld~al~~v~~gGlL~vt~TD-~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i 154 (341)
+..+ ..++..+.+.|++||++.++-.. -....+..+...++ ......+.....+...+.+.+.++|..+
T Consensus 114 ~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~l~~~~Gf~v 186 (219)
T 3jwg_A 114 HLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLR-------HRDHRFEWTRKEFQTWAVKVAEKYGYSV 186 (219)
T ss_dssp GCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----G-------GGCCTTSBCHHHHHHHHHHHHHHHTEEE
T ss_pred hCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCccccc-------ccCceeeecHHHHHHHHHHHHHHCCcEE
Confidence 1112 36778888999999977764321 11111111111111 0111223445556666667777777655
Q ss_pred EEE
Q 019408 155 SPL 157 (341)
Q Consensus 155 ~Pl 157 (341)
+-.
T Consensus 187 ~~~ 189 (219)
T 3jwg_A 187 RFL 189 (219)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.8e-07 Score=88.19 Aligned_cols=69 Identities=20% Similarity=0.130 Sum_probs=58.6
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc--CCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI--ERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n--~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+||+|..++.++. .| .+|+++|+|+.+++.+++|++.+ ++ ++++++++|+.++|... ....||+|++||
T Consensus 101 gcG~G~~al~LA~-~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl-----~~i~~i~~Da~~~L~~~--~~~~fDvV~lDP 171 (410)
T 3ll7_A 101 TGGLGIDFIALMS-KA-SQGIYIERNDETAVAARHNIPLLLNEG-----KDVNILTGDFKEYLPLI--KTFHPDYIYVDP 171 (410)
T ss_dssp SCSSSHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHHHHHSCTT-----CEEEEEESCGGGSHHHH--HHHCCSEEEECC
T ss_pred CCCchHHHHHHHh-cC-CEEEEEECCHHHHHHHHHhHHHhccCC-----CcEEEEECcHHHhhhhc--cCCCceEEEECC
Confidence 5899999998876 34 58999999999999999999988 77 37899999999877543 124799999999
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-06 Score=78.85 Aligned_cols=92 Identities=16% Similarity=0.079 Sum_probs=72.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||..++.++. .+..+|+++|+|+.+++.+++|++.++. +++++++|+.+++... ....||+|+.|.|..
T Consensus 69 cGtG~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~~~~~~--~~~~fD~V~~d~~~~ 139 (236)
T 1zx0_A 69 FGMAIAASKVQE-APIDEHWIIECNDGVFQRLRDWAPRQTH------KVIPLKGLWEDVAPTL--PDGHFDGILYDTYPL 139 (236)
T ss_dssp CTTSHHHHHHHT-SCEEEEEEEECCHHHHHHHHHHGGGCSS------EEEEEESCHHHHGGGS--CTTCEEEEEECCCCC
T ss_pred ccCCHHHHHHHh-cCCCeEEEEcCCHHHHHHHHHHHHhcCC------CeEEEecCHHHhhccc--CCCceEEEEECCccc
Confidence 799999998866 5667899999999999999999886653 6788999999875322 235799999987652
Q ss_pred C--H-------HHHHHHHHhcccCCEEEEE
Q 019408 82 D--S-------SFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p--~-------~fld~al~~v~~gGlL~vt 102 (341)
. . .++..+.+.|++||.|.+.
T Consensus 140 ~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 140 SEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp BGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred chhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 1 1 3367778999999999973
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.28 E-value=9.3e-07 Score=87.93 Aligned_cols=96 Identities=17% Similarity=0.107 Sum_probs=74.8
Q ss_pred CccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
.||+|..++..+... +..+|+++|+|+..++.+++|++.+++. +++++++|+..+... ..+..||+|++||
T Consensus 267 gaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-----~v~~~~~D~~~~~~~--~~~~~fD~Vl~D~P 339 (450)
T 2yxl_A 267 AAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-----IVKPLVKDARKAPEI--IGEEVADKVLLDAP 339 (450)
T ss_dssp SCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-----SEEEECSCTTCCSSS--SCSSCEEEEEEECC
T ss_pred CCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-----cEEEEEcChhhcchh--hccCCCCEEEEcCC
Confidence 379999999998753 3368999999999999999999999883 688899998754211 1125799999998
Q ss_pred C-CCC------------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 79 F-GSD------------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 y-gsp------------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
+ |+. ..+++.+.+.|++||.|.+ +|
T Consensus 340 csg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy-~t 389 (450)
T 2yxl_A 340 CTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLY-TT 389 (450)
T ss_dssp CCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEE-EE
T ss_pred CCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE-Ee
Confidence 2 221 2467888999999999986 44
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-06 Score=84.22 Aligned_cols=90 Identities=19% Similarity=0.144 Sum_probs=73.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG- 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg- 80 (341)
||+|..++.++. .|+.+|+++|+|+ +++.+++|++.|++. ++++++++|+.++ ....++||+|+.++.+
T Consensus 75 cG~G~~~~~la~-~g~~~v~gvD~s~-~l~~a~~~~~~~~~~----~~v~~~~~d~~~~----~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 75 SGTGILCMFAAK-AGARKVIGIECSS-ISDYAVKIVKANKLD----HVVTIIKGKVEEV----ELPVEKVDIIISEWMGY 144 (349)
T ss_dssp CTTSHHHHHHHH-TTCSEEEEEECST-HHHHHHHHHHHTTCT----TTEEEEESCTTTC----CCSSSCEEEEEECCCBB
T ss_pred ccchHHHHHHHH-CCCCEEEEECcHH-HHHHHHHHHHHcCCC----CcEEEEECcHHHc----cCCCCceEEEEEccccc
Confidence 799999999998 5888999999994 999999999999884 5689999999765 1234689999998721
Q ss_pred ------CCHHHHHHHHHhcccCCEEEE
Q 019408 81 ------SDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 81 ------sp~~fld~al~~v~~gGlL~v 101 (341)
....++..+.+.|++||++..
T Consensus 145 ~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 145 CLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 223456666789999999973
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.9e-07 Score=86.81 Aligned_cols=89 Identities=20% Similarity=0.127 Sum_probs=73.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||..++.++. .|+.+|+++|+| .+++.+++|++.|++. ++++++++|+.++. . .++||+|+.++.+.
T Consensus 72 cGtG~ls~~la~-~g~~~V~gvD~s-~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~----~-~~~~D~Iv~~~~~~ 140 (376)
T 3r0q_C 72 TGSGILAIWSAQ-AGARKVYAVEAT-KMADHARALVKANNLD----HIVEVIEGSVEDIS----L-PEKVDVIISEWMGY 140 (376)
T ss_dssp CTTTHHHHHHHH-TTCSEEEEEESS-TTHHHHHHHHHHTTCT----TTEEEEESCGGGCC----C-SSCEEEEEECCCBT
T ss_pred cCcCHHHHHHHh-cCCCEEEEEccH-HHHHHHHHHHHHcCCC----CeEEEEECchhhcC----c-CCcceEEEEcChhh
Confidence 799999999998 688899999999 9999999999999985 56899999997642 1 26899999998221
Q ss_pred -------CHHHHHHHHHhcccCCEEEE
Q 019408 82 -------DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 -------p~~fld~al~~v~~gGlL~v 101 (341)
+..++....+.|++||+|++
T Consensus 141 ~l~~e~~~~~~l~~~~~~LkpgG~li~ 167 (376)
T 3r0q_C 141 FLLRESMFDSVISARDRWLKPTGVMYP 167 (376)
T ss_dssp TBTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred cccchHHHHHHHHHHHhhCCCCeEEEE
Confidence 22356666689999999985
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.6e-06 Score=78.28 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=75.0
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHc-CCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSI-ERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n-~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
||+|..++.++...| ..+|+++|+|+.+++.+++|++.+ +. .++++.++|+.+. ......||+|++||-
T Consensus 105 ~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~-----~~v~~~~~d~~~~----~~~~~~~D~v~~~~~ 175 (258)
T 2pwy_A 105 TGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV-----ENVRFHLGKLEEA----ELEEAAYDGVALDLM 175 (258)
T ss_dssp CTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC-----CCEEEEESCGGGC----CCCTTCEEEEEEESS
T ss_pred CCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-----CCEEEEECchhhc----CCCCCCcCEEEECCc
Confidence 799999999987524 568999999999999999999988 74 4688899998764 112347999999983
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
. +..+++.+.+.|++||.|++..
T Consensus 176 ~-~~~~l~~~~~~L~~gG~l~~~~ 198 (258)
T 2pwy_A 176 E-PWKVLEKAALALKPDRFLVAYL 198 (258)
T ss_dssp C-GGGGHHHHHHHEEEEEEEEEEE
T ss_pred C-HHHHHHHHHHhCCCCCEEEEEe
Confidence 2 4478899999999999999854
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.6e-06 Score=77.76 Aligned_cols=93 Identities=16% Similarity=0.084 Sum_probs=76.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++.. +..+|+++|+|+.+++.+++|++.+++. +++++.++|+.++- .....||+|+...
T Consensus 55 cG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~----~~~~~fD~i~~~~~~~ 125 (267)
T 3kkz_A 55 CGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQ----NRVTGIVGSMDDLP----FRNEELDLIWSEGAIY 125 (267)
T ss_dssp CTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEECCTTSCC----CCTTCEEEEEESSCGG
T ss_pred CCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCC----cCcEEEEcChhhCC----CCCCCEEEEEEcCCce
Confidence 7999999999984 6668999999999999999999998874 56899999986532 2346899998765
Q ss_pred CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
.-.+..++..+.+.|++||.|.++.
T Consensus 126 ~~~~~~~l~~~~~~LkpgG~l~~~~ 150 (267)
T 3kkz_A 126 NIGFERGLNEWRKYLKKGGYLAVSE 150 (267)
T ss_dssp GTCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ecCHHHHHHHHHHHcCCCCEEEEEE
Confidence 1235678888999999999999854
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.2e-06 Score=77.28 Aligned_cols=93 Identities=14% Similarity=0.072 Sum_probs=75.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..++.++.. +..+|+++|+|+.+++.+++|++.+++. +++++.++|+..+ ......||+|+... +
T Consensus 55 ~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~----~~~~~~fD~v~~~~~l~ 125 (257)
T 3f4k_A 55 CGTGGQTLFLADY-VKGQITGIDLFPDFIEIFNENAVKANCA----DRVKGITGSMDNL----PFQNEELDLIWSEGAIY 125 (257)
T ss_dssp CTTSHHHHHHHHH-CCSEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEECCTTSC----SSCTTCEEEEEEESCSC
T ss_pred CCCCHHHHHHHHh-CCCeEEEEECCHHHHHHHHHHHHHcCCC----CceEEEECChhhC----CCCCCCEEEEEecChHh
Confidence 7999999999885 4349999999999999999999998884 4688999998543 12346899998764 2
Q ss_pred -CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 -GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 -gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
-.+..++..+.+.|++||.|.++.
T Consensus 126 ~~~~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 126 NIGFERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp CCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hcCHHHHHHHHHHHcCCCcEEEEEE
Confidence 135578888999999999999865
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.3e-06 Score=76.67 Aligned_cols=98 Identities=12% Similarity=0.134 Sum_probs=73.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHH------cCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEE
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS------IERGSGDEKRWVVTHFDANRVLSECYLKREFFDLID 75 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~------n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvId 75 (341)
||+|...+..|.......|+++|+|+.+++.+++|++. ++. .+++++++|+...|.... ....||.|+
T Consensus 55 cG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-----~nv~~~~~d~~~~l~~~~-~~~~~D~v~ 128 (235)
T 3ckk_A 55 CGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-----QNIACLRSNAMKHLPNFF-YKGQLTKMF 128 (235)
T ss_dssp CTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-----TTEEEEECCTTTCHHHHC-CTTCEEEEE
T ss_pred cCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-----CeEEEEECcHHHhhhhhC-CCcCeeEEE
Confidence 79999999998854346899999999999999999875 233 368899999987554321 235799887
Q ss_pred e---CCCCC---------CHHHHHHHHHhcccCCEEEEEecCC
Q 019408 76 I---DSFGS---------DSSFLRTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 76 l---DPygs---------p~~fld~al~~v~~gGlL~vt~TD~ 106 (341)
+ ||+-. ...++..+.+.|++||.|.+ .||.
T Consensus 129 ~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~-~td~ 170 (235)
T 3ckk_A 129 FLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYT-ITDV 170 (235)
T ss_dssp EESCC-----------CCCHHHHHHHHHHEEEEEEEEE-EESC
T ss_pred EeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEE-EeCC
Confidence 6 66421 12688889999999999998 5543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-06 Score=84.14 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=72.6
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||+|..++.++.. +. .+|+++|+|+.+++.+++|++.+++. .++...|+.... ...||+|+.+| |
T Consensus 205 cG~G~~~~~la~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~------~~~~~~d~~~~~------~~~fD~Iv~~~~~ 271 (343)
T 2pjd_A 205 CGAGVLSVAFARH-SPKIRLTLCDVSAPAVEASRATLAANGVE------GEVFASNVFSEV------KGRFDMIISNPPF 271 (343)
T ss_dssp CTTSHHHHHHHHH-CTTCBCEEEESBHHHHHHHHHHHHHTTCC------CEEEECSTTTTC------CSCEEEEEECCCC
T ss_pred CccCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHhCCC------CEEEEccccccc------cCCeeEEEECCCc
Confidence 7999999999884 53 47999999999999999999998872 456788886532 35799999998 5
Q ss_pred CC--------CHHHHHHHHHhcccCCEEEEEec
Q 019408 80 GS--------DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gs--------p~~fld~al~~v~~gGlL~vt~T 104 (341)
.. ...++..+.+.|++||.|.+...
T Consensus 272 ~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 272 HDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp CSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred ccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 42 23567788899999999998653
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.7e-06 Score=82.40 Aligned_cols=90 Identities=18% Similarity=0.132 Sum_probs=72.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||+|..++.++. .|+.+|+++|+| ..++.+++|++.|++. ++++++++|+.++ ....++||+|+.++.+.
T Consensus 47 cGtG~ls~~la~-~g~~~v~~vD~s-~~~~~a~~~~~~~~~~----~~i~~~~~d~~~~----~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 47 CGTGILSMFAAK-HGAKHVIGVDMS-SIIEMAKELVELNGFS----DKITLLRGKLEDV----HLPFPKVDIIISEWMGY 116 (328)
T ss_dssp CTTSHHHHHHHH-TCCSEEEEEESS-THHHHHHHHHHHTTCT----TTEEEEESCTTTS----CCSSSCEEEEEECCCBT
T ss_pred CccHHHHHHHHH-CCCCEEEEEChH-HHHHHHHHHHHHcCCC----CCEEEEECchhhc----cCCCCcccEEEEeCchh
Confidence 799999999987 688899999999 5899999999999884 5789999998764 12236899999997321
Q ss_pred -------CHHHHHHHHHhcccCCEEEE
Q 019408 82 -------DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 -------p~~fld~al~~v~~gGlL~v 101 (341)
+..++....+.|++||++..
T Consensus 117 ~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 117 FLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 23455666689999999974
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-06 Score=82.87 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=73.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC---
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF--- 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy--- 79 (341)
|.|...=+.++..++++|+++|||+..+++.++-+...+...-+..+++++.+|++++|+. ..++||+|++|.+
T Consensus 93 GdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~---~~~~yDvIi~D~~dp~ 169 (294)
T 3o4f_A 93 GDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ---TSQTFDVIISDCTDPI 169 (294)
T ss_dssp TTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC---SSCCEEEEEESCCCCC
T ss_pred CchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh---ccccCCEEEEeCCCcC
Confidence 5555544555545789999999999999999998753211000125799999999999864 3568999999964
Q ss_pred CCC-----HHHHHHHHHhcccCCEEEEEec
Q 019408 80 GSD-----SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gsp-----~~fld~al~~v~~gGlL~vt~T 104 (341)
|.+ .+|.+.+-++|++||++++.+.
T Consensus 170 ~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 170 GPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp CTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 321 3889999999999999998653
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.4e-06 Score=78.57 Aligned_cols=90 Identities=19% Similarity=0.212 Sum_probs=73.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..++.++...| .+|+++|+|+..++.+++|++.+++. +++++.++|+.++ ...||+|+... +
T Consensus 81 cG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~-------~~~fD~v~~~~~~~ 148 (302)
T 3hem_A 81 CGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSP----RRKEVRIQGWEEF-------DEPVDRIVSLGAFE 148 (302)
T ss_dssp CTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCS----SCEEEEECCGGGC-------CCCCSEEEEESCGG
T ss_pred ccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCC----CceEEEECCHHHc-------CCCccEEEEcchHH
Confidence 799999999988546 67999999999999999999998874 5788999999764 35899987754 2
Q ss_pred --CCC---------HHHHHHHHHhcccCCEEEEEe
Q 019408 80 --GSD---------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 --gsp---------~~fld~al~~v~~gGlL~vt~ 103 (341)
..| ..++..+.+.|++||.|.++.
T Consensus 149 ~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 149 HFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp GTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred hcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 111 477888899999999999854
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.22 E-value=2e-06 Score=79.21 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=71.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++.++. .|+ +|+++|+|+.+++.+++|++.+++ ++++.++|+..+.. ...||+|+..+ +.
T Consensus 129 cG~G~~~~~l~~-~g~-~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~~-----~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 129 CGQGRNSLYLSL-LGY-DVTSWDHNENSIAFLNETKEKENL------NISTALYDINAANI-----QENYDFIVSTVVFM 195 (286)
T ss_dssp CTTCHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTC------CEEEEECCGGGCCC-----CSCEEEEEECSSGG
T ss_pred CCCCHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHHHcCC------ceEEEEeccccccc-----cCCccEEEEccchh
Confidence 799999999988 576 899999999999999999998875 57888999875321 46899999876 21
Q ss_pred --C-C--HHHHHHHHHhcccCCEEEEEe
Q 019408 81 --S-D--SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 --s-p--~~fld~al~~v~~gGlL~vt~ 103 (341)
. + ..++..+.+.|++||.|.+.+
T Consensus 196 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 196 FLNRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 2 257788889999999977644
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-06 Score=83.12 Aligned_cols=89 Identities=20% Similarity=0.146 Sum_probs=71.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF-- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy-- 79 (341)
||+|..++.+++ .|+.+|+++|+|+ +++.+++|++.|++. ++++++++|+.++ ....++||+|+.++.
T Consensus 73 cGtG~ls~~la~-~g~~~v~gvD~s~-~~~~a~~~~~~~~~~----~~i~~~~~d~~~~----~~~~~~~D~Ivs~~~~~ 142 (340)
T 2fyt_A 73 CGTGILSMFAAK-AGAKKVLGVDQSE-ILYQAMDIIRLNKLE----DTITLIKGKIEEV----HLPVEKVDVIISEWMGY 142 (340)
T ss_dssp CTTSHHHHHHHH-TTCSEEEEEESST-HHHHHHHHHHHTTCT----TTEEEEESCTTTS----CCSCSCEEEEEECCCBT
T ss_pred ccCcHHHHHHHH-cCCCEEEEEChHH-HHHHHHHHHHHcCCC----CcEEEEEeeHHHh----cCCCCcEEEEEEcCchh
Confidence 799999999988 5888999999997 999999999999884 5789999998754 222368999999872
Q ss_pred CC-----CHHHHHHHHHhcccCCEEE
Q 019408 80 GS-----DSSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 80 gs-----p~~fld~al~~v~~gGlL~ 100 (341)
.- ...++..+.+.|++||.+.
T Consensus 143 ~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 143 FLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 21 1235666678999999997
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.3e-06 Score=73.49 Aligned_cols=94 Identities=15% Similarity=0.085 Sum_probs=75.0
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
||+|..++.++...+ ..+|+++|+|+.+++.+++|++.+++. ++++.++|+..+- .....||+|+..-
T Consensus 46 ~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~d~~~~~----~~~~~fD~v~~~~~l 116 (219)
T 3dh0_A 46 TGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-----NVEVLKSEENKIP----LPDNTVDFIFMAFTF 116 (219)
T ss_dssp CTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-----TEEEEECBTTBCS----SCSSCEEEEEEESCG
T ss_pred cCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEecccccCC----CCCCCeeEEEeehhh
Confidence 799999999988532 358999999999999999999988873 6888999986531 2345799998764
Q ss_pred --CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 --FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 --ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+..++..+.+.|++||.+.++..
T Consensus 117 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 144 (219)
T 3dh0_A 117 HELSEPLKFLEELKRVAKPFAYLAIIDW 144 (219)
T ss_dssp GGCSSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHhCCCeEEEEEEe
Confidence 22345788899999999999998653
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-06 Score=76.83 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=72.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++..+.. ..+|+++|+|+.+++.+++|++.+++. ++++.++|+...+.. ...||+|+++. +.
T Consensus 86 ~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~----~~~~D~i~~~~~~~ 154 (210)
T 3lbf_A 86 TGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLH-----NVSTRHGDGWQGWQA----RAPFDAIIVTAAPP 154 (210)
T ss_dssp CTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEESCGGGCCGG----GCCEEEEEESSBCS
T ss_pred CCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCC-----ceEEEECCcccCCcc----CCCccEEEEccchh
Confidence 7999999998884 468999999999999999999998873 688999999864432 35799999986 22
Q ss_pred CCHHHHHHHHHhcccCCEEEEEecC
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTSTD 105 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~TD 105 (341)
.+.+.+.+.|++||.|.++..+
T Consensus 155 ---~~~~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 155 ---EIPTALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp ---SCCTHHHHTEEEEEEEEEEECS
T ss_pred ---hhhHHHHHhcccCcEEEEEEcC
Confidence 1123577899999999986543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.20 E-value=3.9e-07 Score=84.49 Aligned_cols=89 Identities=9% Similarity=-0.017 Sum_probs=72.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHH--cCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS--IERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~--n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+|+|..+.+.++. + .+|+++|+|+..++.+++|+.. +++. ..+++++.+|+.+++ ++||+|++|..
T Consensus 81 ~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~---~~rv~~~~~D~~~~~-------~~fD~Ii~d~~ 148 (262)
T 2cmg_A 81 GFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKN---NKNFTHAKQLLDLDI-------KKYDLIFCLQE 148 (262)
T ss_dssp SCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHT---CTTEEEESSGGGSCC-------CCEEEEEESSC
T ss_pred CCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccC---CCeEEEEechHHHHH-------hhCCEEEECCC
Confidence 6889998888885 7 8999999999999999998753 1221 146889999998765 47999999974
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
- |..|+..+.+.|++||+|++..
T Consensus 149 d-p~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 149 P-DIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp C-CHHHHHHHHTTEEEEEEEEEEE
T ss_pred C-hHHHHHHHHHhcCCCcEEEEEc
Confidence 3 6678999999999999999843
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-06 Score=82.71 Aligned_cols=98 Identities=17% Similarity=0.149 Sum_probs=72.8
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHH-------cCCCCCCCccEEEEeccHHHHHHHhhhcCCcccE
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKS-------IERGSGDEKRWVVTHFDANRVLSECYLKREFFDL 73 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~-------n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDv 73 (341)
||+|..++.++...|. .+|+++|+|+.+++.+++|++. |++.. ...++++.++|+.+.+... ....||+
T Consensus 114 ~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~-~~~~v~~~~~d~~~~~~~~--~~~~fD~ 190 (336)
T 2b25_A 114 SGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEE-WPDNVDFIHKDISGATEDI--KSLTFDA 190 (336)
T ss_dssp CTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSC-CCCCEEEEESCTTCCC---------EEE
T ss_pred CCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccc-cCCceEEEECChHHccccc--CCCCeeE
Confidence 7999999999885355 7899999999999999999985 33310 0136888999997653221 1246999
Q ss_pred EEeCCCCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 74 IDIDSFGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 74 IdlDPygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
|++|+.. |..+++.+.+.|++||.|++..
T Consensus 191 V~~~~~~-~~~~l~~~~~~LkpgG~lv~~~ 219 (336)
T 2b25_A 191 VALDMLN-PHVTLPVFYPHLKHGGVCAVYV 219 (336)
T ss_dssp EEECSSS-TTTTHHHHGGGEEEEEEEEEEE
T ss_pred EEECCCC-HHHHHHHHHHhcCCCcEEEEEe
Confidence 9999843 3457889999999999999744
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.18 E-value=2.3e-06 Score=76.14 Aligned_cols=93 Identities=12% Similarity=-0.014 Sum_probs=71.0
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||+|..++..+...| ..+|+++|+|+.+++.+++|++.+ .+++++++|+.+.... ......||+|++|+..
T Consensus 82 ~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-------~~v~~~~~d~~~~~~~-~~~~~~~D~v~~~~~~ 153 (227)
T 1g8a_A 82 IASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-------RNIVPILGDATKPEEY-RALVPKVDVIFEDVAQ 153 (227)
T ss_dssp TTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-------TTEEEEECCTTCGGGG-TTTCCCEEEEEECCCS
T ss_pred ccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-------CCCEEEEccCCCcchh-hcccCCceEEEECCCC
Confidence 799999999987534 368999999999999999999865 2577889998763211 1113479999999842
Q ss_pred CC--HHHHHHHHHhcccCCEEEEE
Q 019408 81 SD--SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp--~~fld~al~~v~~gGlL~vt 102 (341)
.. ..++..+.+.|++||.|.+.
T Consensus 154 ~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 154 PTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HhHHHHHHHHHHHhcCCCCEEEEE
Confidence 21 13478889999999999986
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=6.5e-06 Score=80.23 Aligned_cols=101 Identities=15% Similarity=0.065 Sum_probs=71.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc---CCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI---ERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n---~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
|.|...=+.++ ...++|+++|||+..+++.++-+... .++.+...+++++.+||+++|++....+++||+|++|.|
T Consensus 215 GdG~~~revlk-h~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~ 293 (381)
T 3c6k_A 215 GDGGILCEIVK-LKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLT 293 (381)
T ss_dssp TTCHHHHHHHT-TCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECC
T ss_pred CcHHHHHHHHh-cCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCC
Confidence 45554444454 45689999999999999999865321 111111235889999999999877666778999999953
Q ss_pred ---------CCC-----HHHHHHHHHhcccCCEEEEEec
Q 019408 80 ---------GSD-----SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 ---------gsp-----~~fld~al~~v~~gGlL~vt~T 104 (341)
+.+ .+|++.+-++|++||++++.+.
T Consensus 294 D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~ 332 (381)
T 3c6k_A 294 AVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 332 (381)
T ss_dssp SSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 211 2566777889999999987553
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.17 E-value=3e-06 Score=77.76 Aligned_cols=93 Identities=18% Similarity=0.198 Sum_probs=74.8
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHc-C-CCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSI-E-RGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n-~-~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
||+|..++..+...+ ..+|+++|+|+.+++.+++|++.+ + +. .++++.++|+.+.. .....||+|++|+
T Consensus 108 ~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~----~~v~~~~~d~~~~~----~~~~~~D~v~~~~ 179 (280)
T 1i9g_A 108 AGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP----DNWRLVVSDLADSE----LPDGSVDRAVLDM 179 (280)
T ss_dssp CTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCC----TTEEEECSCGGGCC----CCTTCEEEEEEES
T ss_pred ccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCC----CcEEEEECchHhcC----CCCCceeEEEECC
Confidence 799999999887423 568999999999999999999987 5 32 46888999987641 1235799999997
Q ss_pred CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
- .+..+++.+.+.|++||.|++..
T Consensus 180 ~-~~~~~l~~~~~~L~pgG~l~~~~ 203 (280)
T 1i9g_A 180 L-APWEVLDAVSRLLVAGGVLMVYV 203 (280)
T ss_dssp S-CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred c-CHHHHHHHHHHhCCCCCEEEEEe
Confidence 3 24578899999999999999854
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.17 E-value=6.4e-06 Score=73.70 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=70.7
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCC--CCCCCccEEEEeccHHHH------------------HH
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIER--GSGDEKRWVVTHFDANRV------------------LS 62 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~--~~~~~~~~~v~~~DA~~~------------------l~ 62 (341)
|||.=++-+|. ....+|+.+|.|++-.+.+++|++.+++ . ++++++.+||... ..
T Consensus 38 GtGySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~----~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~ 112 (202)
T 3cvo_A 38 GSGGSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEG----TEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPL 112 (202)
T ss_dssp SCSHHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTT----CEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHH
T ss_pred CchHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCC----CceEEEEeCchhhhcccccccchhhhhHHHHhh
Confidence 78876777775 3247899999999999999999999886 4 6889999997542 21
Q ss_pred Hhhh--cCCcccEEEeCC-CCCCHHHHHHHHHhcccCCEEEE
Q 019408 63 ECYL--KREFFDLIDIDS-FGSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 63 ~~~~--~~~~fDvIdlDP-ygsp~~fld~al~~v~~gGlL~v 101 (341)
.... ....||+|++|= +. ..++..+++.+++||+|.+
T Consensus 113 ~i~~~~~~~~fDlIfIDg~k~--~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 113 AVWRTEGFRHPDVVLVDGRFR--VGCALATAFSITRPVTLLF 152 (202)
T ss_dssp GGGGCTTCCCCSEEEECSSSH--HHHHHHHHHHCSSCEEEEE
T ss_pred hhhccccCCCCCEEEEeCCCc--hhHHHHHHHhcCCCeEEEE
Confidence 1111 125799999997 33 3778889999999999965
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.6e-06 Score=73.42 Aligned_cols=93 Identities=17% Similarity=0.257 Sum_probs=75.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++.. ...+|+++|+|+.+++.+++|++.+++. .++++.++|+.++- .....||+|+...
T Consensus 52 ~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~----~~~~~~D~v~~~~~l~ 122 (219)
T 3dlc_A 52 SGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLN----DRIQIVQGDVHNIP----IEDNYADLIVSRGSVF 122 (219)
T ss_dssp CTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEECBTTBCS----SCTTCEEEEEEESCGG
T ss_pred CCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhcccc----CceEEEEcCHHHCC----CCcccccEEEECchHh
Confidence 7999999999885 3457999999999999999999988874 46889999986531 2345899999876
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+..++..+.+.|++||.|.++.
T Consensus 123 ~~~~~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 123 FWEDVATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCHHHHHHHHHHhCCCCCEEEEEe
Confidence 2344678889999999999999854
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.14 E-value=5.2e-06 Score=74.35 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=71.7
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||+|..++..+...| ..+|+++|+|+.+++.+.+|++.+ .+++++++|+..... .......||+|+.|+..
T Consensus 86 ~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-------~~v~~~~~d~~~~~~-~~~~~~~~D~V~~~~~~ 157 (233)
T 2ipx_A 86 AASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-------TNIIPVIEDARHPHK-YRMLIAMVDVIFADVAQ 157 (233)
T ss_dssp CTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-------TTEEEECSCTTCGGG-GGGGCCCEEEEEECCCC
T ss_pred ccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-------CCeEEEEcccCChhh-hcccCCcEEEEEEcCCC
Confidence 799999999988533 468999999999999999999876 256788999876321 11124579999999853
Q ss_pred CC---HHHHHHHHHhcccCCEEEEE
Q 019408 81 SD---SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp---~~fld~al~~v~~gGlL~vt 102 (341)
+ ..++..+.+.|++||.|+++
T Consensus 158 -~~~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 158 -PDQTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp -TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -ccHHHHHHHHHHHHcCCCeEEEEE
Confidence 3 33477788999999999984
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.2e-06 Score=76.18 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=72.5
Q ss_pred ccccHhHHHHhhhCC-----CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe
Q 019408 2 CGCGIRSLRYLAEAK-----ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI 76 (341)
Q Consensus 2 agsG~rgir~a~e~g-----a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl 76 (341)
||+|..++.++...+ ..+|+++|+|+.+++.+++|++.+++..-+..++++.++|+...+.........||+|++
T Consensus 89 ~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~ 168 (227)
T 2pbf_A 89 SGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHV 168 (227)
T ss_dssp CTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHCCEEEEEE
T ss_pred CCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCCCcCEEEE
Confidence 799999998887433 248999999999999999999987620000036788999988643110011347999999
Q ss_pred CCCCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 77 DSFGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 77 DPygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
++-.. .+++.+.+.|++||.|+++..
T Consensus 169 ~~~~~--~~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 169 GASAS--ELPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp CSBBS--SCCHHHHHHEEEEEEEEEEEE
T ss_pred CCchH--HHHHHHHHhcCCCcEEEEEEc
Confidence 98221 345778889999999998653
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.13 E-value=4e-06 Score=77.19 Aligned_cols=93 Identities=18% Similarity=0.151 Sum_probs=75.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++. .|+ +|+++|+|+.+++.++++++.+++. .+++++++|+.++.. .....||+|+..-
T Consensus 77 cG~G~~~~~l~~-~~~-~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~---~~~~~fD~v~~~~~l~ 147 (285)
T 4htf_A 77 GGEGQTAIKMAE-RGH-QVILCDLSAQMIDRAKQAAEAKGVS----DNMQFIHCAAQDVAS---HLETPVDLILFHAVLE 147 (285)
T ss_dssp CTTCHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHC-CCG----GGEEEEESCGGGTGG---GCSSCEEEEEEESCGG
T ss_pred CcchHHHHHHHH-CCC-EEEEEECCHHHHHHHHHHHHhcCCC----cceEEEEcCHHHhhh---hcCCCceEEEECchhh
Confidence 799999999988 465 7999999999999999999988773 478899999987642 1246899998764
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+..++..+.+.|++||.|.++.
T Consensus 148 ~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 148 WVADPRSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp GCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccCHHHHHHHHHHHcCCCeEEEEEE
Confidence 2345678889999999999999854
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.9e-06 Score=81.43 Aligned_cols=90 Identities=23% Similarity=0.180 Sum_probs=72.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||+|..++.++. .|+.+|+++|+|+ .++.+++|++.|++. ++++++++|+.++- ..++||+|+.++.+.
T Consensus 59 cGtG~ls~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~l~----~~v~~~~~d~~~~~-----~~~~~D~Ivs~~~~~ 127 (348)
T 2y1w_A 59 CGSGILSFFAAQ-AGARKIYAVEAST-MAQHAEVLVKSNNLT----DRIVVIPGKVEEVS-----LPEQVDIIISEPMGY 127 (348)
T ss_dssp CTTSHHHHHHHH-TTCSEEEEEECST-HHHHHHHHHHHTTCT----TTEEEEESCTTTCC-----CSSCEEEEEECCCBT
T ss_pred CCccHHHHHHHh-CCCCEEEEECCHH-HHHHHHHHHHHcCCC----CcEEEEEcchhhCC-----CCCceeEEEEeCchh
Confidence 799999999988 6888999999997 679999999999884 57899999987541 135799999997321
Q ss_pred ----C--HHHHHHHHHhcccCCEEEEE
Q 019408 82 ----D--SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 ----p--~~fld~al~~v~~gGlL~vt 102 (341)
. ...+..+.+.|++||++.++
T Consensus 128 ~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 128 MLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp TBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred cCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 1 24556677899999999864
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.8e-06 Score=86.84 Aligned_cols=91 Identities=23% Similarity=0.170 Sum_probs=71.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||+|..++.++. .|+.+|+++|+|+ +++.+++|++.|++. ++++++++|+.++ . -.++||+|+.+|.+.
T Consensus 167 cGtG~la~~la~-~~~~~V~gvD~s~-~l~~A~~~~~~~gl~----~~v~~~~~d~~~~----~-~~~~fD~Ivs~~~~~ 235 (480)
T 3b3j_A 167 CGSGILSFFAAQ-AGARKIYAVEAST-MAQHAEVLVKSNNLT----DRIVVIPGKVEEV----S-LPEQVDIIISEPMGY 235 (480)
T ss_dssp CSTTHHHHHHHH-TTCSEEEEEECHH-HHHHHHHHHHHTTCT----TTEEEEESCTTTC----C-CSSCEEEEECCCCHH
T ss_pred CcccHHHHHHHH-cCCCEEEEEEcHH-HHHHHHHHHHHcCCC----CcEEEEECchhhC----c-cCCCeEEEEEeCchH
Confidence 799999998887 6888999999999 889999999999884 5789999998753 1 135799999998321
Q ss_pred ---C---HHHHHHHHHhcccCCEEEEEe
Q 019408 82 ---D---SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 ---p---~~fld~al~~v~~gGlL~vt~ 103 (341)
. ...+..+.+.|++||+|.++.
T Consensus 236 ~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 236 MLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp HHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred hcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1 133445568899999998643
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.07 E-value=7.8e-06 Score=74.66 Aligned_cols=96 Identities=14% Similarity=0.105 Sum_probs=76.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++......+|+++|+|+..++.+++|+..+++. ++++...|+..+. .....||+|+...
T Consensus 46 ~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~d~~~~~----~~~~~fD~v~~~~~l~ 116 (276)
T 3mgg_A 46 CGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-----NVKFLQANIFSLP----FEDSSFDHIFVCFVLE 116 (276)
T ss_dssp CTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEECCGGGCC----SCTTCEEEEEEESCGG
T ss_pred CCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEcccccCC----CCCCCeeEEEEechhh
Confidence 799999999888532468999999999999999999988873 6888999987542 2346899998764
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEecCC
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~TD~ 106 (341)
...+..++..+.+.|++||+|.++..|.
T Consensus 117 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (276)
T 3mgg_A 117 HLQSPEEALKSLKKVLKPGGTITVIEGDH 145 (276)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred hcCCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 2234578888999999999999976544
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.2e-05 Score=76.03 Aligned_cols=90 Identities=9% Similarity=-0.014 Sum_probs=69.4
Q ss_pred ccccHhH-HHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRS-LRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rg-ir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||+|..+ +.+++..| .+|+++|+|+++++.+++|++..++ +++++.++|+.++- ...||+|+++=..
T Consensus 131 cG~G~~ta~~lA~~~g-a~V~gIDis~~~l~~Ar~~~~~~gl-----~~v~~v~gDa~~l~------d~~FDvV~~~a~~ 198 (298)
T 3fpf_A 131 GGPLPLTGILLSHVYG-MRVNVVEIEPDIAELSRKVIEGLGV-----DGVNVITGDETVID------GLEFDVLMVAALA 198 (298)
T ss_dssp CCSSCHHHHHHHHTTC-CEEEEEESSHHHHHHHHHHHHHHTC-----CSEEEEESCGGGGG------GCCCSEEEECTTC
T ss_pred CCccHHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHhcCC-----CCeEEEECchhhCC------CCCcCEEEECCCc
Confidence 4555554 44454345 4799999999999999999998877 37899999998641 3579999997532
Q ss_pred -CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 -SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 -sp~~fld~al~~v~~gGlL~vt~ 103 (341)
.+..+++...+.|++||.|.+..
T Consensus 199 ~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 199 EPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp SCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred cCHHHHHHHHHHHcCCCcEEEEEc
Confidence 22468889999999999999854
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=9.6e-06 Score=74.57 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=72.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++.+.|+ +|+++|+|+..++.++++++..++. .++++.++|+.++ ...||+|+..-
T Consensus 73 cG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~-------~~~fD~v~~~~~l~ 140 (287)
T 1kpg_A 73 CGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENL----RSKRVLLAGWEQF-------DEPVDRIVSIGAFE 140 (287)
T ss_dssp CTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCC----SCEEEEESCGGGC-------CCCCSEEEEESCGG
T ss_pred CcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCC----CCeEEEECChhhC-------CCCeeEEEEeCchh
Confidence 7999999999865666 8999999999999999999977763 4688899998542 15799887652
Q ss_pred -C--CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -F--GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -y--gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+ ..+..++..+.+.|++||.|.++.
T Consensus 141 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 141 HFGHERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp GTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hcChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2 224578889999999999999854
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.06 E-value=9.9e-06 Score=71.34 Aligned_cols=91 Identities=20% Similarity=0.110 Sum_probs=70.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++..+. .+. +|+++|+|+.+++.+++|++.++. ++++.++|+..+ ......||+|+..+
T Consensus 47 ~G~G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~----~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 47 CGVGGFSFLLED-YGF-EVVGVDISEDMIRKAREYAKSRES------NVEFIVGDARKL----SFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CTTSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTC------CCEEEECCTTSC----CSCTTCEEEEEEESCGG
T ss_pred ccCCHHHHHHHH-cCC-EEEEEECCHHHHHHHHHHHHhcCC------CceEEECchhcC----CCCCCcEEEEEEcCchH
Confidence 799999988877 565 899999999999999999987752 567889998652 12235799888766
Q ss_pred CCC---CHHHHHHHHHhcccCCEEEEEec
Q 019408 79 FGS---DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 ygs---p~~fld~al~~v~~gGlL~vt~T 104 (341)
+.. +..++..+.+.|++||.|.++..
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 332 23567788899999999998653
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=6.6e-06 Score=73.02 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=70.9
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||+|..++.++...|. .+|+++|+|+..++.+++|++.+++......++++.+.|+.... .....||+|+++..-
T Consensus 86 ~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~i~~~~~~ 161 (226)
T 1i1n_A 86 SGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY----AEEAPYDAIHVGAAA 161 (226)
T ss_dssp CTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC----GGGCCEEEEEECSBB
T ss_pred CCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc----ccCCCcCEEEECCch
Confidence 7999999988874344 48999999999999999999986530000035788899986432 123579999999722
Q ss_pred CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~ 103 (341)
. .+++.+.+.|++||.|.++.
T Consensus 162 ~--~~~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 162 P--VVPQALIDQLKPGGRLILPV 182 (226)
T ss_dssp S--SCCHHHHHTEEEEEEEEEEE
T ss_pred H--HHHHHHHHhcCCCcEEEEEE
Confidence 1 44577889999999999854
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=6e-06 Score=86.66 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=59.3
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCCC----HH---H---HH
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FGSD----SS---F---LR 87 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygsp----~~---f---ld 87 (341)
+|+.+|+|+.+++.+++|++.+++. +.+++.++|+.++... .....||+|+.+| ||.- .. + +.
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~----~~i~~~~~D~~~~~~~--~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~ 331 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIG----ELITFEVKDVAQLTNP--LPKGPYGTVLSNPPYGERLDSEPALIALHSLLG 331 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCG----GGEEEEECCGGGCCCS--CTTCCCCEEEECCCCCC---CCHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCC----CceEEEECChhhCccc--cccCCCCEEEeCCCccccccchhHHHHHHHHHH
Confidence 6999999999999999999999984 5689999999864211 1112799999999 8842 11 1 22
Q ss_pred HHHHhcccCCEEEEEecCC
Q 019408 88 TVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 88 ~al~~v~~gGlL~vt~TD~ 106 (341)
..++.+.+||-+++-+.|.
T Consensus 332 ~~lk~~~~g~~~~ilt~~~ 350 (703)
T 3v97_A 332 RIMKNQFGGWNLSLFSASP 350 (703)
T ss_dssp HHHHHHCTTCEEEEEESCH
T ss_pred HHHHhhCCCCeEEEEeCCH
Confidence 4455566799888755443
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=6.4e-06 Score=73.93 Aligned_cols=91 Identities=14% Similarity=0.072 Sum_probs=69.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||+|..++.++...+ .+|+++|+|+.+++.+++|++.+++. ++++..+|+..-+ .....||+|+++.--.
T Consensus 100 ~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~----~~~~~fD~Ii~~~~~~ 169 (235)
T 1jg1_A 100 TGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVK-----NVHVILGDGSKGF----PPKAPYDVIIVTAGAP 169 (235)
T ss_dssp CTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEESCGGGCC----GGGCCEEEEEECSBBS
T ss_pred CCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEECCcccCC----CCCCCccEEEECCcHH
Confidence 799999999987544 67999999999999999999988874 4788899983211 1223599999987111
Q ss_pred CHHHHHHHHHhcccCCEEEEEec
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~T 104 (341)
.+.+.+.+.|++||.|+++..
T Consensus 170 --~~~~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 170 --KIPEPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp --SCCHHHHHTEEEEEEEEEEEC
T ss_pred --HHHHHHHHhcCCCcEEEEEEe
Confidence 223567889999999998553
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=7.1e-06 Score=70.64 Aligned_cols=91 Identities=18% Similarity=0.117 Sum_probs=71.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++.++. .|. +|+++|+|+.+++.+++|++.+++. .+++.+.|+..+. . ...||+|+... +.
T Consensus 41 ~G~G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~d~~~~~----~-~~~~D~v~~~~~l~ 108 (199)
T 2xvm_A 41 CGNGRNSLYLAA-NGY-DVDAWDKNAMSIANVERIKSIENLD-----NLHTRVVDLNNLT----F-DRQYDFILSTVVLM 108 (199)
T ss_dssp CTTSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHHTCT-----TEEEEECCGGGCC----C-CCCEEEEEEESCGG
T ss_pred CCCCHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHHhCCCC-----CcEEEEcchhhCC----C-CCCceEEEEcchhh
Confidence 799999998887 465 7999999999999999999988773 5788899987532 1 45799998765 21
Q ss_pred -----CCHHHHHHHHHhcccCCEEEEEec
Q 019408 81 -----SDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 -----sp~~fld~al~~v~~gGlL~vt~T 104 (341)
.+..++..+.+.|++||.|.+..+
T Consensus 109 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 109 FLEAKTIPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 234677888899999999876443
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.6e-05 Score=70.71 Aligned_cols=94 Identities=13% Similarity=0.131 Sum_probs=67.9
Q ss_pred ccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||+|..++..+.+. ++ +|+++|+|+.+++++++|+..+++. .++++ .|..... .+..||+|.+==
T Consensus 58 CG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~----~~v~~--~d~~~~~-----~~~~~DvVLa~k-- 123 (200)
T 3fzg_A 58 CGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTT----IKYRF--LNKESDV-----YKGTYDVVFLLK-- 123 (200)
T ss_dssp CTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCS----SEEEE--ECCHHHH-----TTSEEEEEEEET--
T ss_pred CCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCC----ccEEE--ecccccC-----CCCCcChhhHhh--
Confidence 79999999999874 56 9999999999999999999999884 35554 5554321 245799886532
Q ss_pred CCHHHH-------HHHHHhcccCCEEEEEecCCCCCCCC
Q 019408 81 SDSSFL-------RTVFNAVKRDGLLYLTSTDGYSSGGH 112 (341)
Q Consensus 81 sp~~fl-------d~al~~v~~gGlL~vt~TD~~~l~g~ 112 (341)
-.+.+ ...++.|++||+++- -|+..+.|.
T Consensus 124 -~LHlL~~~~~al~~v~~~L~pggvfIS--fptksl~Gr 159 (200)
T 3fzg_A 124 -MLPVLKQQDVNILDFLQLFHTQNFVIS--FPIKSLSGK 159 (200)
T ss_dssp -CHHHHHHTTCCHHHHHHTCEEEEEEEE--EECCCCC--
T ss_pred -HHHhhhhhHHHHHHHHHHhCCCCEEEE--eChHHhcCC
Confidence 12222 267889999998873 345566664
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=98.03 E-value=5.6e-06 Score=74.56 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=74.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++...| .+|+++|+|+..++.+++|++.+++. .++++.++|+.++. . ...||+|+.-.
T Consensus 45 cG~G~~~~~la~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~----~~v~~~~~d~~~~~----~-~~~fD~V~~~~~~~ 114 (256)
T 1nkv_A 45 SGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVS----ERVHFIHNDAAGYV----A-NEKCDVAACVGATW 114 (256)
T ss_dssp CTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEESCCTTCC----C-SSCEEEEEEESCGG
T ss_pred CCCCHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhcCCC----cceEEEECChHhCC----c-CCCCCEEEECCChH
Confidence 799999999887544 47999999999999999999988874 46888999987642 1 45799998632
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+..++..+.+.|++||.|+++.
T Consensus 115 ~~~~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 115 IAGGFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp GTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHcCCCeEEEEec
Confidence 2345688889999999999999854
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.1e-05 Score=71.17 Aligned_cols=96 Identities=20% Similarity=0.239 Sum_probs=73.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..++.++. .|+ +|+++|+|+.+++.+++|++.+++......++++.+.|+..+ ......||+|++.. +
T Consensus 39 ~G~G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~v~~~~~l~ 112 (235)
T 3sm3_A 39 CGSGKISLELAS-KGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL----SFHDSSFDFAVMQAFLT 112 (235)
T ss_dssp CTTSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC----CSCTTCEEEEEEESCGG
T ss_pred CCCCHHHHHHHh-CCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc----CCCCCceeEEEEcchhh
Confidence 799999999988 465 799999999999999999987765311123578889998653 12346899998865 1
Q ss_pred --CCCH---HHHHHHHHhcccCCEEEEEe
Q 019408 80 --GSDS---SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 --gsp~---~fld~al~~v~~gGlL~vt~ 103 (341)
..+. .++..+.+.|++||.|+++.
T Consensus 113 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 113 SVPDPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp GCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 1233 57888889999999999854
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.4e-05 Score=78.92 Aligned_cols=96 Identities=13% Similarity=0.057 Sum_probs=71.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHH-------HcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLK-------SIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI 74 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~-------~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI 74 (341)
||+|...+.+|.+.|+.+|+.+|+|+.+++++++|++ .+++. ..+++++++|+.++-.... -..||+|
T Consensus 182 CGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~---~~rVefi~GD~~~lp~~d~--~~~aDVV 256 (438)
T 3uwp_A 182 SGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK---HAEYTLERGDFLSEEWRER--IANTSVI 256 (438)
T ss_dssp CTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC---CCEEEEEECCTTSHHHHHH--HHTCSEE
T ss_pred CCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC---CCCeEEEECcccCCccccc--cCCccEE
Confidence 7999999999987788899999999999999999864 34541 1478999999987543211 1269999
Q ss_pred EeCCC-CCC--HHHHHHHHHhcccCCEEEEE
Q 019408 75 DIDSF-GSD--SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 75 dlDPy-gsp--~~fld~al~~v~~gGlL~vt 102 (341)
++.++ -.+ ...+...++.|++||.|+++
T Consensus 257 f~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 257 FVNNFAFGPEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp EECCTTCCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred EEcccccCchHHHHHHHHHHcCCCCcEEEEe
Confidence 99873 222 12344567889999999864
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.4e-05 Score=69.53 Aligned_cols=80 Identities=21% Similarity=0.202 Sum_probs=62.3
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||+|..++.++. .|+.+|+++|+|+.+++.+++|++ + ++++++|+.++ ...||+|++|| |
T Consensus 59 gcG~G~~~~~l~~-~~~~~v~~vD~~~~~~~~a~~~~~--~--------~~~~~~d~~~~-------~~~~D~v~~~~p~ 120 (200)
T 1ne2_A 59 GTGNGILACGSYL-LGAESVTAFDIDPDAIETAKRNCG--G--------VNFMVADVSEI-------SGKYDTWIMNPPF 120 (200)
T ss_dssp TCTTCHHHHHHHH-TTBSEEEEEESCHHHHHHHHHHCT--T--------SEEEECCGGGC-------CCCEEEEEECCCC
T ss_pred eCCccHHHHHHHH-cCCCEEEEEECCHHHHHHHHHhcC--C--------CEEEECcHHHC-------CCCeeEEEECCCc
Confidence 3899999999987 588899999999999999999986 2 35788998763 25799999999 5
Q ss_pred CC-----CHHHHHHHHHhcccCCEEEE
Q 019408 80 GS-----DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 80 gs-----p~~fld~al~~v~~gGlL~v 101 (341)
.. ...++..+++.+ |.+++
T Consensus 121 ~~~~~~~~~~~l~~~~~~~---g~~~~ 144 (200)
T 1ne2_A 121 GSVVKHSDRAFIDKAFETS---MWIYS 144 (200)
T ss_dssp -------CHHHHHHHHHHE---EEEEE
T ss_pred hhccCchhHHHHHHHHHhc---CcEEE
Confidence 43 235788888887 44544
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.3e-05 Score=73.74 Aligned_cols=99 Identities=19% Similarity=0.271 Sum_probs=72.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC--CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID--SF 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD--Py 79 (341)
||+|..++.++. .|+ +|+++|+|+.+++.+++|+...+... ...++.+..+|+..+.... .....||+|+.- .+
T Consensus 66 cG~G~~~~~l~~-~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~-~~~~~fD~V~~~g~~l 141 (293)
T 3thr_A 66 CGTGVDSIMLVE-EGF-SVTSVDASDKMLKYALKERWNRRKEP-AFDKWVIEEANWLTLDKDV-PAGDGFDAVICLGNSF 141 (293)
T ss_dssp CTTSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTTSH-HHHTCEEEECCGGGHHHHS-CCTTCEEEEEECTTCG
T ss_pred CCCCHHHHHHHH-CCC-eEEEEECCHHHHHHHHHhhhhccccc-ccceeeEeecChhhCcccc-ccCCCeEEEEEcChHH
Confidence 799999999988 476 89999999999999999986433210 0024567888987765332 234689999985 22
Q ss_pred ---CC-------CHHHHHHHHHhcccCCEEEEEec
Q 019408 80 ---GS-------DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 ---gs-------p~~fld~al~~v~~gGlL~vt~T 104 (341)
.. +..++..+.+.|++||+|.++..
T Consensus 142 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 142 AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp GGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 12 34678888999999999998653
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1.7e-05 Score=71.17 Aligned_cols=92 Identities=17% Similarity=0.188 Sum_probs=73.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++. .+ .+|+++|+|+.+++.+++|++.+++. ++++.++|+..+ ......||+|+..-
T Consensus 30 cG~G~~~~~l~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~----~~~~~~fD~v~~~~~l~ 98 (239)
T 1xxl_A 30 AGAGHTALAFSP-YV-QECIGVDATKEMVEVASSFAQEKGVE-----NVRFQQGTAESL----PFPDDSFDIITCRYAAH 98 (239)
T ss_dssp CTTSHHHHHHGG-GS-SEEEEEESCHHHHHHHHHHHHHHTCC-----SEEEEECBTTBC----CSCTTCEEEEEEESCGG
T ss_pred cCcCHHHHHHHH-hC-CEEEEEECCHHHHHHHHHHHHHcCCC-----CeEEEecccccC----CCCCCcEEEEEECCchh
Confidence 799999998887 45 48999999999999999999988773 578889998642 12345799998773
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+..++..+.+.|++||.|.++..
T Consensus 99 ~~~~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 99 HFSDVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 33456788889999999999998543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=97.96 E-value=2.8e-05 Score=67.49 Aligned_cols=91 Identities=11% Similarity=-0.011 Sum_probs=70.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF-G 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy-g 80 (341)
||+|..++.++. .|. +|+++|+|+.+++.+++|++.++. ++++.+.|+..+ ......||+|+.... -
T Consensus 38 cG~G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~----~~~~~~fD~v~~~~~~~ 105 (202)
T 2kw5_A 38 EGEGRNACFLAS-LGY-EVTAVDQSSVGLAKAKQLAQEKGV------KITTVQSNLADF----DIVADAWEGIVSIFCHL 105 (202)
T ss_dssp CSCTHHHHHHHT-TTC-EEEEECSSHHHHHHHHHHHHHHTC------CEEEECCBTTTB----SCCTTTCSEEEEECCCC
T ss_pred CCCCHhHHHHHh-CCC-eEEEEECCHHHHHHHHHHHHhcCC------ceEEEEcChhhc----CCCcCCccEEEEEhhcC
Confidence 799999988887 565 899999999999999999998765 467888998754 122457999987531 1
Q ss_pred ---CCHHHHHHHHHhcccCCEEEEEec
Q 019408 81 ---SDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 ---sp~~fld~al~~v~~gGlL~vt~T 104 (341)
.+..++..+.+.|++||.|+++..
T Consensus 106 ~~~~~~~~l~~~~~~L~pgG~l~~~~~ 132 (202)
T 2kw5_A 106 PSSLRQQLYPKVYQGLKPGGVFILEGF 132 (202)
T ss_dssp CHHHHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 123567788889999999998653
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=2e-05 Score=73.74 Aligned_cols=91 Identities=22% Similarity=0.243 Sum_probs=72.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++...|+ +|+++|+|+..++.++++++.+++. .++++.++|+.++ ...||+|+...
T Consensus 99 cG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~-------~~~fD~v~~~~~l~ 166 (318)
T 2fk8_A 99 CGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTN----RSRQVLLQGWEDF-------AEPVDRIVSIEAFE 166 (318)
T ss_dssp CTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCS----SCEEEEESCGGGC-------CCCCSEEEEESCGG
T ss_pred ccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC----CceEEEECChHHC-------CCCcCEEEEeChHH
Confidence 7899999998874465 8999999999999999999987763 4688899998543 25799987653
Q ss_pred -CC--CCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FG--SDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -yg--sp~~fld~al~~v~~gGlL~vt~T 104 (341)
++ .+..++..+.+.|++||.|.++.-
T Consensus 167 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 167 HFGHENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp GTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 21 235678888999999999998543
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=8e-05 Score=72.13 Aligned_cols=99 Identities=20% Similarity=0.161 Sum_probs=73.9
Q ss_pred CccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCC-CCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGS-GDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~-~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
.||.|.-++-.|. .+. ..|++||+|+.-++.+++|++..+... .....+++.+.|+..+-.. .+..||.|.+|+
T Consensus 156 CAaPGGKT~~la~-~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~---~~~~fD~VLlDa 231 (359)
T 4fzv_A 156 CAAPGGKTLALLQ-TGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL---EGDTYDRVLVDV 231 (359)
T ss_dssp SCTTCHHHHHHHH-TTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH---STTCEEEEEEEC
T ss_pred cCCccHHHHHHHH-hcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh---ccccCCEEEECC
Confidence 4788999988776 443 579999999999999999999876520 0124678899999876432 246899999998
Q ss_pred CCCCH----------------------------HHHHHHHHhcccCCEEEEEec
Q 019408 79 FGSDS----------------------------SFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 ygsp~----------------------------~fld~al~~v~~gGlL~vt~T 104 (341)
--|.. ..|+.|+++|++||.|.- +|
T Consensus 232 PCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVY-sT 284 (359)
T 4fzv_A 232 PCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVY-ST 284 (359)
T ss_dssp CCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEE-EE
T ss_pred ccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEE-Ee
Confidence 52211 234688999999998874 66
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=97.94 E-value=1.1e-05 Score=74.47 Aligned_cols=93 Identities=14% Similarity=0.186 Sum_probs=74.2
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
||+|..++.++...+ ..+|+++|+|+.+++.+++|+..++. ++++.++|+.++. . ...||+|+...
T Consensus 31 cG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~v~~~~~d~~~~~----~-~~~fD~v~~~~~l 99 (284)
T 3gu3_A 31 CGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY------DSEFLEGDATEIE----L-NDKYDIAICHAFL 99 (284)
T ss_dssp CTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS------EEEEEESCTTTCC----C-SSCEEEEEEESCG
T ss_pred CCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC------ceEEEEcchhhcC----c-CCCeeEEEECChh
Confidence 799999999988532 46899999999999999999986653 6788999998632 1 35899998876
Q ss_pred --CCCCHHHHHHHHHhcccCCEEEEEecC
Q 019408 79 --FGSDSSFLRTVFNAVKRDGLLYLTSTD 105 (341)
Q Consensus 79 --ygsp~~fld~al~~v~~gGlL~vt~TD 105 (341)
+..+..++..+.+.|++||+|.+...+
T Consensus 100 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 100 LHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 223457888899999999999986643
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=8.4e-06 Score=74.82 Aligned_cols=94 Identities=17% Similarity=0.142 Sum_probs=72.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..++.++. .|..+|+++|+|+.+++.+++|+..++.. .++++.++|+...- ......||+|+..- +
T Consensus 73 cG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~---~~~~~~fD~v~~~~~l~ 144 (298)
T 1ri5_A 73 CGKGGDLLKYER-AGIGEYYGVDIAEVSINDARVRARNMKRR----FKVFFRAQDSYGRH---MDLGKEFDVISSQFSFH 144 (298)
T ss_dssp CTTTTTHHHHHH-HTCSEEEEEESCHHHHHHHHHHHHTSCCS----SEEEEEESCTTTSC---CCCSSCEEEEEEESCGG
T ss_pred CCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHhcCCC----ccEEEEECCccccc---cCCCCCcCEEEECchhh
Confidence 799999999776 57779999999999999999999977663 46788999987641 11245799998764 2
Q ss_pred ---CC---CHHHHHHHHHhcccCCEEEEEe
Q 019408 80 ---GS---DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 ---gs---p~~fld~al~~v~~gGlL~vt~ 103 (341)
.. +..++..+.+.|++||.|+++.
T Consensus 145 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 145 YAFSTSESLDIAQRNIARHLRPGGYFIMTV 174 (298)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 11 2356777888999999999854
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=9.9e-06 Score=76.46 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=71.3
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||+|..++.++...+ ..+|+++|+|++.++.+++|++.+++. ++++.++|+.+.+. ....||+|+.++ +
T Consensus 84 cG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-----~v~~~~~d~~~~~~----~~~~fD~Iv~~~~~ 154 (317)
T 1dl5_A 84 GGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-----NVIFVCGDGYYGVP----EFSPYDVIFVTVGV 154 (317)
T ss_dssp CTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEESCGGGCCG----GGCCEEEEEECSBB
T ss_pred CCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CeEEEECChhhccc----cCCCeEEEEEcCCH
Confidence 799999999987533 257999999999999999999998874 48889999976432 134799999998 3
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
... .+.+.+.|++||.|++..
T Consensus 155 ~~~---~~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 155 DEV---PETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp SCC---CHHHHHHEEEEEEEEEEB
T ss_pred HHH---HHHHHHhcCCCcEEEEEE
Confidence 211 156678999999999864
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.1e-05 Score=75.29 Aligned_cols=93 Identities=17% Similarity=0.123 Sum_probs=73.2
Q ss_pred ccccHhHHHHhh-hCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLA-EAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~-e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||+|..++..+. .....+|+++|+|+.+++.+++|++.+++. ++++++++|+.++. . ...||+|+..+ +
T Consensus 127 cG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~----~-~~~fD~v~~~~~~ 197 (305)
T 3ocj_A 127 CGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA----GQITLHRQDAWKLD----T-REGYDLLTSNGLN 197 (305)
T ss_dssp CTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTG----GGEEEEECCGGGCC----C-CSCEEEEECCSSG
T ss_pred CCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCC----CceEEEECchhcCC----c-cCCeEEEEECChh
Confidence 789999998853 233468999999999999999999988774 56899999998642 1 26899999966 2
Q ss_pred ---CCCHH---HHHHHHHhcccCCEEEEEe
Q 019408 80 ---GSDSS---FLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 ---gsp~~---fld~al~~v~~gGlL~vt~ 103 (341)
..+.. ++..+.+.|++||.|+++.
T Consensus 198 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 198 IYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp GGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 23332 6888899999999999854
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1e-05 Score=75.77 Aligned_cols=93 Identities=8% Similarity=-0.062 Sum_probs=74.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++...| .+|+++|+|+.+++.+++|++.+++. .++++.++|+.++ ......||+|+.--
T Consensus 126 cG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~----~~~~~~fD~V~~~~~l~ 196 (312)
T 3vc1_A 126 CGRGGSMVMAHRRFG-SRVEGVTLSAAQADFGNRRARELRID----DHVRSRVCNMLDT----PFDKGAVTASWNNESTM 196 (312)
T ss_dssp CTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEECCTTSC----CCCTTCEEEEEEESCGG
T ss_pred CCCCHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCC----CceEEEECChhcC----CCCCCCEeEEEECCchh
Confidence 799999999887434 57999999999999999999999874 4788999998653 12346899996642
Q ss_pred CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+-.+..++..+.+.|++||.|.++.
T Consensus 197 ~~~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 197 YVDLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp GSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 1125678889999999999999754
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.92 E-value=5.6e-06 Score=74.32 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=70.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++. .+..+|+++|+|+.+++.+++|+..++. .++++.+.|+..+. .....||+|+++-
T Consensus 88 cG~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~~~----~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 88 AGIGRITKRLLL-PLFREVDMVDITEDFLVQAKTYLGEEGK-----RVRNYFCCGLQDFT----PEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CTTTHHHHHTTT-TTCSEEEEEESCHHHHHHHHHHTGGGGG-----GEEEEEECCGGGCC----CCSSCEEEEEEESCGG
T ss_pred CCCCHHHHHHHH-hcCCEEEEEeCCHHHHHHHHHHhhhcCC-----ceEEEEEcChhhcC----CCCCCEEEEEEcchhh
Confidence 799999998887 4667899999999999999999987642 35778899976532 2245799998874
Q ss_pred CC-CCH--HHHHHHHHhcccCCEEEEEe
Q 019408 79 FG-SDS--SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 yg-sp~--~fld~al~~v~~gGlL~vt~ 103 (341)
+- .+. .++..+.+.|++||.|+++.
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 185 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKD 185 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 11 111 56778889999999999854
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.92 E-value=1e-05 Score=71.14 Aligned_cols=91 Identities=13% Similarity=0.101 Sum_probs=70.7
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||+|..++.++...|. .+|+++|+|+..++.+++|++.+++. .+++.+.|+...+. ....||+|+++. +
T Consensus 86 ~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~----~~~~fD~v~~~~~~ 156 (215)
T 2yxe_A 86 TGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-----NVIVIVGDGTLGYE----PLAPYDRIYTTAAG 156 (215)
T ss_dssp CTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-----TEEEEESCGGGCCG----GGCCEEEEEESSBB
T ss_pred CCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CeEEEECCcccCCC----CCCCeeEEEECCch
Confidence 7899999999885333 68999999999999999999988873 57888999853221 135799999987 2
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEec
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~T 104 (341)
.. +.+.+.+.|++||.|+++..
T Consensus 157 ~~---~~~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 157 PK---IPEPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp SS---CCHHHHHTEEEEEEEEEEES
T ss_pred HH---HHHHHHHHcCCCcEEEEEEC
Confidence 21 22577889999999998653
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.1e-05 Score=71.58 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=73.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++...| .+|+++|+|+..++.++++++.+++. +++++..+|+.++ ......||+|+.-.
T Consensus 70 cG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~----~~~~~~fD~v~~~~~l~ 140 (273)
T 3bus_A 70 CGIGKPAVRLATARD-VRVTGISISRPQVNQANARATAAGLA----NRVTFSYADAMDL----PFEDASFDAVWALESLH 140 (273)
T ss_dssp CTTSHHHHHHHHHSC-CEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEECCTTSC----CSCTTCEEEEEEESCTT
T ss_pred CCCCHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHhcCCC----cceEEEECccccC----CCCCCCccEEEEechhh
Confidence 799999999887544 58999999999999999999988874 4688899998753 12245799887543
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+..++..+.+.|++||.|.++.
T Consensus 141 ~~~~~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 141 HMPDRGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp TSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 2335577888899999999999854
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.90 E-value=8.5e-06 Score=70.91 Aligned_cols=90 Identities=12% Similarity=0.112 Sum_probs=69.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++.++. .|..+|+++|+|+.+++.+++|+.. . ..+++.++|+.++ ......||+|+..+ +.
T Consensus 51 cG~G~~~~~l~~-~~~~~v~~~D~s~~~~~~a~~~~~~--~-----~~i~~~~~d~~~~----~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 51 CGNSALSYELFL-GGFPNVTSVDYSSVVVAAMQACYAH--V-----PQLRWETMDVRKL----DFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CTTCSHHHHHHH-TTCCCEEEEESCHHHHHHHHHHTTT--C-----TTCEEEECCTTSC----CSCSSCEEEEEEESHHH
T ss_pred CCCcHHHHHHHH-cCCCcEEEEeCCHHHHHHHHHhccc--C-----CCcEEEEcchhcC----CCCCCcccEEEECcchh
Confidence 799999999887 5766899999999999999999863 1 2567788898653 12345799998765 21
Q ss_pred ------------------CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 ------------------SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 ------------------sp~~fld~al~~v~~gGlL~vt~ 103 (341)
.+..++..+.+.|++||.+.+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 11466778889999999999854
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=97.90 E-value=2.3e-05 Score=72.44 Aligned_cols=94 Identities=9% Similarity=-0.008 Sum_probs=74.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++...|+ +|+++|+|+.+++.++++++..++. .++++.++|+.++ ......||+|+.--
T Consensus 91 cG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~----~~~~~~fD~v~~~~~l~ 161 (297)
T 2o57_A 91 AGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLA----DNITVKYGSFLEI----PCEDNSYDFIWSQDAFL 161 (297)
T ss_dssp CTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCT----TTEEEEECCTTSC----SSCTTCEEEEEEESCGG
T ss_pred CCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCC----cceEEEEcCcccC----CCCCCCEeEEEecchhh
Confidence 7899999998874354 7999999999999999999988874 4688899998753 12245799887643
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+..++..+.+.|++||.|.++..
T Consensus 162 ~~~~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 162 HSPDKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 34456788899999999999998643
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.90 E-value=2.7e-05 Score=70.52 Aligned_cols=91 Identities=19% Similarity=0.225 Sum_probs=71.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..+...+. .+. +|+++|+|+..++.++++++.+++. ++++..+|+..+ ......||+|+..-
T Consensus 46 cG~G~~~~~l~~-~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-----~v~~~~~d~~~l----~~~~~~fD~V~~~~~l~ 114 (260)
T 1vl5_A 46 TGGGHVANAFAP-FVK-KVVAFDLTEDILKVARAFIEGNGHQ-----QVEYVQGDAEQM----PFTDERFHIVTCRIAAH 114 (260)
T ss_dssp CTTCHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEECCC-CC----CSCTTCEEEEEEESCGG
T ss_pred CCCCHHHHHHHH-hCC-EEEEEeCCHHHHHHHHHHHHhcCCC-----ceEEEEecHHhC----CCCCCCEEEEEEhhhhH
Confidence 789999988877 454 8999999999999999999988763 578889998653 12345899998763
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+..++..+.+.|++||.|.++.
T Consensus 115 ~~~d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 115 HFPNPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 2334578888999999999999854
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=9.1e-06 Score=71.35 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=69.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++. .+ .+|+++|+|+.+++.+++|+..+ .++++.++|+.++. ....||+|+...
T Consensus 60 cG~G~~~~~l~~-~~-~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~~~-----~~~~fD~v~~~~~l~ 125 (216)
T 3ofk_A 60 CAAGAFTEKLAP-HC-KRLTVIDVMPRAIGRACQRTKRW-------SHISWAATDILQFS-----TAELFDLIVVAEVLY 125 (216)
T ss_dssp CTTSHHHHHHGG-GE-EEEEEEESCHHHHHHHHHHTTTC-------SSEEEEECCTTTCC-----CSCCEEEEEEESCGG
T ss_pred CCCCHHHHHHHH-cC-CEEEEEECCHHHHHHHHHhcccC-------CCeEEEEcchhhCC-----CCCCccEEEEccHHH
Confidence 799999999887 45 48999999999999999998753 25788999987653 246899998864
Q ss_pred C-CCC---HHHHHHHHHhcccCCEEEEEec
Q 019408 79 F-GSD---SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 y-gsp---~~fld~al~~v~~gGlL~vt~T 104 (341)
+ ..+ ..++..+.+.|++||.|+++..
T Consensus 126 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 126 YLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 1 222 2457788899999999998553
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=97.89 E-value=6.3e-06 Score=81.69 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=73.5
Q ss_pred CccccHhHHHHhhhC-------------CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc
Q 019408 1 MCGCGIRSLRYLAEA-------------KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK 67 (341)
Q Consensus 1 fagsG~rgir~a~e~-------------ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~ 67 (341)
.||||.+.+.++... ....++.+|+|+.++++++.|+.+.++. .....+.++|+.... .
T Consensus 179 acGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~---~~~~~i~~gD~l~~~-----~ 250 (445)
T 2okc_A 179 ACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG---TDRSPIVCEDSLEKE-----P 250 (445)
T ss_dssp TCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC---SSCCSEEECCTTTSC-----C
T ss_pred CCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC---cCCCCEeeCCCCCCc-----c
Confidence 389999999887641 1246999999999999999999998873 114567899986431 1
Q ss_pred CCcccEEEeCC-CCCC--------------------HHHHHHHHHhcccCCEEEEEe
Q 019408 68 REFFDLIDIDS-FGSD--------------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 68 ~~~fDvIdlDP-ygsp--------------------~~fld~al~~v~~gGlL~vt~ 103 (341)
..+||+|+.+| |+.. ..|+..+++.|++||.+++..
T Consensus 251 ~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 251 STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 24799999998 7641 268999999999999998744
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.1e-05 Score=73.08 Aligned_cols=96 Identities=14% Similarity=0.177 Sum_probs=73.2
Q ss_pred ccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHc-CCCCCCCccEEEEeccHHHHHHHh--hhcCCcccEEEeC
Q 019408 2 CGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSI-ERGSGDEKRWVVTHFDANRVLSEC--YLKREFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n-~~~~~~~~~~~v~~~DA~~~l~~~--~~~~~~fDvIdlD 77 (341)
||+|..++.++... ...+|+++|+|+..++.+++|++.+ +.. .++++.++|+.++-... ......||+|+..
T Consensus 45 cG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~ 120 (299)
T 3g5t_A 45 CGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY----KNVSFKISSSDDFKFLGADSVDKQKIDMITAV 120 (299)
T ss_dssp CTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CC----TTEEEEECCTTCCGGGCTTTTTSSCEEEEEEE
T ss_pred CCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCC----CceEEEEcCHHhCCccccccccCCCeeEEeHh
Confidence 79999999999642 5678999999999999999999986 322 47889999997642110 0001589999876
Q ss_pred C---CCCCHHHHHHHHHhcccCCEEEE
Q 019408 78 S---FGSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 78 P---ygsp~~fld~al~~v~~gGlL~v 101 (341)
- +-.+..++..+.+.|++||.|++
T Consensus 121 ~~l~~~~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 121 ECAHWFDFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp SCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred hHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence 4 11456888999999999999987
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.1e-05 Score=82.18 Aligned_cols=97 Identities=11% Similarity=0.038 Sum_probs=74.7
Q ss_pred CccccHhHHHHhhh---CC---------------CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCc----cEEEEeccHH
Q 019408 1 MCGCGIRSLRYLAE---AK---------------ADFVMANDGNDAHRRVILGNLKSIERGSGDEK----RWVVTHFDAN 58 (341)
Q Consensus 1 fagsG~rgir~a~e---~g---------------a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~----~~~v~~~DA~ 58 (341)
.||||.+.+.++.. .+ ...++.+|+|+.++++++.|+.++++. . ...+.++|+.
T Consensus 177 aCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~----~~~~~~~~I~~gDtL 252 (541)
T 2ar0_A 177 AAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE----GNLDHGGAIRLGNTL 252 (541)
T ss_dssp TCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC----CBGGGTBSEEESCTT
T ss_pred CcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC----ccccccCCeEeCCCc
Confidence 48999999888753 11 136999999999999999999988873 1 1568899987
Q ss_pred HHHHHhhhcCCcccEEEeCC-CCCC-----------------HHHHHHHHHhcccCCEEEEEec
Q 019408 59 RVLSECYLKREFFDLIDIDS-FGSD-----------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 59 ~~l~~~~~~~~~fDvIdlDP-ygsp-----------------~~fld~al~~v~~gGlL~vt~T 104 (341)
..... ...+||+|+.+| |+.. ..|+..+++.|++||.+++..+
T Consensus 253 ~~~~~---~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 253 GSDGE---NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp SHHHH---TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccc---cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 54321 235799999999 7642 1589999999999999997543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=97.86 E-value=2.8e-05 Score=69.18 Aligned_cols=93 Identities=14% Similarity=0.083 Sum_probs=65.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||..++..+...|..+|+++|+|+.+++.+.++++.. .++.++.+|+......... .+.||+|+.|-...
T Consensus 66 cGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-------~~v~~~~~d~~~~~~~~~~-~~~fD~V~~~~~~~ 137 (210)
T 1nt2_A 66 AASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-------NNIIPLLFDASKPWKYSGI-VEKVDLIYQDIAQK 137 (210)
T ss_dssp CTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-------SSEEEECSCTTCGGGTTTT-CCCEEEEEECCCST
T ss_pred CcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-------CCeEEEEcCCCCchhhccc-ccceeEEEEeccCh
Confidence 799999998887544468999999999998888877643 2456678887653110011 25799999995221
Q ss_pred C--HHHHHHHHHhcccCCEEEEE
Q 019408 82 D--SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p--~~fld~al~~v~~gGlL~vt 102 (341)
. ..++..+.+.|++||.|.+.
T Consensus 138 ~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 138 NQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp THHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHhCCCCEEEEE
Confidence 1 12367788899999999985
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=97.86 E-value=1.8e-05 Score=78.49 Aligned_cols=95 Identities=11% Similarity=0.014 Sum_probs=70.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHH-------HHHHHHcCCCCCCCccEEEEeccHHHH---HHHhhhcCCcc
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVI-------LGNLKSIERGSGDEKRWVVTHFDANRV---LSECYLKREFF 71 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i-------~~N~~~n~~~~~~~~~~~v~~~DA~~~---l~~~~~~~~~f 71 (341)
||||..++.+|...|+.+|+++|+|+.+++.+ ++|++.+++. ..++++.++|+... +... ...|
T Consensus 251 CGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~---~~nV~~i~gD~~~~~~~~~~~---~~~F 324 (433)
T 1u2z_A 251 SGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR---LNNVEFSLKKSFVDNNRVAEL---IPQC 324 (433)
T ss_dssp CTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC---CCCEEEEESSCSTTCHHHHHH---GGGC
T ss_pred CCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC---CCceEEEEcCccccccccccc---cCCC
Confidence 79999999999866777999999999999999 9999988731 03678888765421 2111 2479
Q ss_pred cEEEeCCCCC-C--HHHHHHHHHhcccCCEEEEE
Q 019408 72 DLIDIDSFGS-D--SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 72 DvIdlDPygs-p--~~fld~al~~v~~gGlL~vt 102 (341)
|+|++..+.. + ...+....+.|++||.|.+.
T Consensus 325 DvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 325 DVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp SEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred CEEEEeCccccccHHHHHHHHHHhCCCCeEEEEe
Confidence 9999975322 1 23456777899999999974
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.4e-05 Score=71.32 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=71.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++.++. .|. +|+++|+|+.+++.+++|+...+.. .++++.++|+.++. ....||+|+.-. +.
T Consensus 75 cG~G~~~~~l~~-~~~-~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~-----~~~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 75 CGGGHDVVAMAS-PER-FVVGLDISESALAKANETYGSSPKA----EYFSFVKEDVFTWR-----PTELFDLIFDYVFFC 143 (235)
T ss_dssp CTTCHHHHHHCB-TTE-EEEEECSCHHHHHHHHHHHTTSGGG----GGEEEECCCTTTCC-----CSSCEEEEEEESSTT
T ss_pred CCCCHHHHHHHh-CCC-eEEEEECCHHHHHHHHHHhhccCCC----cceEEEECchhcCC-----CCCCeeEEEEChhhh
Confidence 799999998876 554 6999999999999999999865432 46889999987643 234899998643 21
Q ss_pred -----CCHHHHHHHHHhcccCCEEEEEec
Q 019408 81 -----SDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 -----sp~~fld~al~~v~~gGlL~vt~T 104 (341)
.+..++..+.+.|++||.|.+...
T Consensus 144 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 172 (235)
T 3lcc_A 144 AIEPEMRPAWAKSMYELLKPDGELITLMY 172 (235)
T ss_dssp TSCGGGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence 234678888899999999997543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=97.86 E-value=8.9e-06 Score=72.51 Aligned_cols=92 Identities=13% Similarity=0.167 Sum_probs=70.4
Q ss_pred ccccHhHHHHhhhCCC------CEEEEeeCCHHHHHHHHHHHHHcC-----CCCCCCccEEEEeccHHHHHHHhhhcCCc
Q 019408 2 CGCGIRSLRYLAEAKA------DFVMANDGNDAHRRVILGNLKSIE-----RGSGDEKRWVVTHFDANRVLSECYLKREF 70 (341)
Q Consensus 2 agsG~rgir~a~e~ga------~~V~~~Dis~~A~~~i~~N~~~n~-----~~~~~~~~~~v~~~DA~~~l~~~~~~~~~ 70 (341)
||+|..++.++...+. .+|+++|+|+.+++.+++|++.++ . .++++.++|+...+. ....
T Consensus 93 ~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~-----~~v~~~~~d~~~~~~----~~~~ 163 (227)
T 1r18_A 93 SGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS-----GQLLIVEGDGRKGYP----PNAP 163 (227)
T ss_dssp CTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH-----TSEEEEESCGGGCCG----GGCS
T ss_pred CCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCC-----CceEEEECCcccCCC----cCCC
Confidence 7899999988874343 489999999999999999998765 3 357888999875221 1257
Q ss_pred ccEEEeCCCCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 71 FDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 71 fDvIdlDPygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
||+|+++.--. .+.+.+.+.|++||.|.++..
T Consensus 164 fD~I~~~~~~~--~~~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 164 YNAIHVGAAAP--DTPTELINQLASGGRLIVPVG 195 (227)
T ss_dssp EEEEEECSCBS--SCCHHHHHTEEEEEEEEEEES
T ss_pred ccEEEECCchH--HHHHHHHHHhcCCCEEEEEEe
Confidence 99999998221 234677889999999998653
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.85 E-value=1.4e-05 Score=68.44 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=62.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||||..++.++. .+ +|+++|+|+.+++. .+ ++++.++|+.+.+. ...||+|+.+| |.
T Consensus 32 cG~G~~~~~l~~-~~--~v~gvD~s~~~~~~------~~--------~~~~~~~d~~~~~~-----~~~fD~i~~n~~~~ 89 (170)
T 3q87_B 32 TSTGVITEQLRK-RN--TVVSTDLNIRALES------HR--------GGNLVRADLLCSIN-----QESVDVVVFNPPYV 89 (170)
T ss_dssp CTTCHHHHHHTT-TS--EEEEEESCHHHHHT------CS--------SSCEEECSTTTTBC-----GGGCSEEEECCCCB
T ss_pred cCccHHHHHHHh-cC--cEEEEECCHHHHhc------cc--------CCeEEECChhhhcc-----cCCCCEEEECCCCc
Confidence 799999999988 56 99999999999988 12 34678999876322 25899999998 64
Q ss_pred C------------CHHHHHHHHHhcccCCEEEEEe
Q 019408 81 S------------DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 s------------p~~fld~al~~v~~gGlL~vt~ 103 (341)
. ...++...++.+ +||.+++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~ 123 (170)
T 3q87_B 90 PDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV 123 (170)
T ss_dssp TTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred cCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence 2 136778888888 999999854
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.8e-05 Score=69.96 Aligned_cols=89 Identities=11% Similarity=0.140 Sum_probs=70.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++. .|..+|+++|+|+.+++.+++++. . ..+++.++|+..+ ......||+|+..-
T Consensus 53 cG~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~---~-----~~~~~~~~d~~~~----~~~~~~fD~v~~~~~l~ 119 (253)
T 3g5l_A 53 CGFGWHCIYAAE-HGAKKVLGIDLSERMLTEAKRKTT---S-----PVVCYEQKAIEDI----AIEPDAYNVVLSSLALH 119 (253)
T ss_dssp CTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHCC---C-----TTEEEEECCGGGC----CCCTTCEEEEEEESCGG
T ss_pred CCCCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHhhc---c-----CCeEEEEcchhhC----CCCCCCeEEEEEchhhh
Confidence 799999999887 587799999999999999999876 1 3578889998643 22346899998754
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+..++..+.+.|++||.|+++.
T Consensus 120 ~~~~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 120 YIASFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhHHHHHHHHHHHcCCCcEEEEEe
Confidence 2335678888899999999999853
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.5e-05 Score=66.68 Aligned_cols=90 Identities=13% Similarity=0.046 Sum_probs=68.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..++.++. .|+ +|+++|+|+.+++.++++ . ...+...|+.++.......+.+||+|+... +
T Consensus 61 ~G~G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~~---~--------~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~ 127 (227)
T 3e8s_A 61 CGEGWLLRALAD-RGI-EAVGVDGDRTLVDAARAA---G--------AGEVHLASYAQLAEAKVPVGKDYDLICANFALL 127 (227)
T ss_dssp CTTCHHHHHHHT-TTC-EEEEEESCHHHHHHHHHT---C--------SSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC
T ss_pred CCCCHHHHHHHH-CCC-EEEEEcCCHHHHHHHHHh---c--------ccccchhhHHhhcccccccCCCccEEEECchhh
Confidence 799999988887 465 799999999999999987 2 224578888876432223345699998764 2
Q ss_pred -CCCHHHHHHHHHhcccCCEEEEEec
Q 019408 80 -GSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 -gsp~~fld~al~~v~~gGlL~vt~T 104 (341)
..+..++..+.+.|++||.|+++..
T Consensus 128 ~~~~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 128 HQDIIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence 3356788999999999999998654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.2e-05 Score=74.82 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=69.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCC-------------------------------------
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGS------------------------------------- 44 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~------------------------------------- 44 (341)
||+|..++.++...+..+|+++|+|+.+++.+++|++.++...
T Consensus 55 CG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 134 (292)
T 3g07_A 55 CNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASR 134 (292)
T ss_dssp CTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC--------------------------------------------
T ss_pred CCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccccchhhhcc
Confidence 7999999999986566799999999999999999987654210
Q ss_pred ----------------CCCccEEEEeccHHHHHHHh-hhcCCcccEEEeCCCC----------CCHHHHHHHHHhcccCC
Q 019408 45 ----------------GDEKRWVVTHFDANRVLSEC-YLKREFFDLIDIDSFG----------SDSSFLRTVFNAVKRDG 97 (341)
Q Consensus 45 ----------------~~~~~~~v~~~DA~~~l~~~-~~~~~~fDvIdlDPyg----------sp~~fld~al~~v~~gG 97 (341)
.-..++++.++|+....... ......||+|+.---- .+..++..+.+.|++||
T Consensus 135 g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG 214 (292)
T 3g07_A 135 GPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGG 214 (292)
T ss_dssp -------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred CccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCc
Confidence 00035788888876322111 1134689999876510 12356778888999999
Q ss_pred EEEEEe
Q 019408 98 LLYLTS 103 (341)
Q Consensus 98 lL~vt~ 103 (341)
+|+++.
T Consensus 215 ~lil~~ 220 (292)
T 3g07_A 215 ILVLEP 220 (292)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999853
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.79 E-value=2.6e-05 Score=70.01 Aligned_cols=89 Identities=19% Similarity=0.188 Sum_probs=69.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC----
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---- 77 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---- 77 (341)
||+|..++..+. .|. +|+++|+|+.+++.+++|++.++. +++++++|+.++. ....||+|++.
T Consensus 50 cG~G~~~~~l~~-~~~-~v~gvD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~~~-----~~~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 50 CGTGIPTLELAE-RGY-EVVGLDLHEEMLRVARRKAKERNL------KIEFLQGDVLEIA-----FKNEFDAVTMFFSTI 116 (252)
T ss_dssp CTTCHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTC------CCEEEESCGGGCC-----CCSCEEEEEECSSGG
T ss_pred CCCCHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHHhcCC------ceEEEECChhhcc-----cCCCccEEEEcCCch
Confidence 799999999987 565 799999999999999999987765 4678899987632 13579999864
Q ss_pred CCCC---CHHHHHHHHHhcccCCEEEEEe
Q 019408 78 SFGS---DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 78 Pygs---p~~fld~al~~v~~gGlL~vt~ 103 (341)
++-. ...++..+.+.|++||.+.++.
T Consensus 117 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 117 MYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 1322 2356677788999999999854
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.77 E-value=2e-05 Score=68.50 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=67.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--y 79 (341)
||+|...+.++.+.|. +|+++|+|+.+++.+++|++.++. ++++.+.|+..+ ......||+|+..- +
T Consensus 32 cG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~----~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 32 AGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNF------KLNISKGDIRKL----PFKDESMSFVYSYGTIF 100 (209)
T ss_dssp CCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTC------CCCEEECCTTSC----CSCTTCEEEEEECSCGG
T ss_pred CCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCC------ceEEEECchhhC----CCCCCceeEEEEcChHH
Confidence 6888887777665554 799999999999999999987653 356778888653 12245799998743 2
Q ss_pred CC----CHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GS----DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gs----p~~fld~al~~v~~gGlL~vt~ 103 (341)
.. +..++..+.+.|++||.++++.
T Consensus 101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 21 2356677788999999999854
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.77 E-value=5e-05 Score=64.01 Aligned_cols=84 Identities=15% Similarity=0.138 Sum_probs=65.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..++.++. .+. +|+++|+|+.+++.++++ . .++++.+.| + ......||+|+... +
T Consensus 26 ~G~G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~~-----~-----~~v~~~~~d----~---~~~~~~~D~v~~~~~l~ 86 (170)
T 3i9f_A 26 CGNGFYCKYLLE-FAT-KLYCIDINVIALKEVKEK-----F-----DSVITLSDP----K---EIPDNSVDFILFANSFH 86 (170)
T ss_dssp CTTCTTHHHHHT-TEE-EEEEECSCHHHHHHHHHH-----C-----TTSEEESSG----G---GSCTTCEEEEEEESCST
T ss_pred CCCCHHHHHHHh-hcC-eEEEEeCCHHHHHHHHHh-----C-----CCcEEEeCC----C---CCCCCceEEEEEccchh
Confidence 799999999987 454 899999999999999998 2 256778888 1 12345899998765 2
Q ss_pred --CCCHHHHHHHHHhcccCCEEEEEec
Q 019408 80 --GSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 --gsp~~fld~al~~v~~gGlL~vt~T 104 (341)
..+..+++.+.+.|++||.+.++..
T Consensus 87 ~~~~~~~~l~~~~~~L~pgG~l~~~~~ 113 (170)
T 3i9f_A 87 DMDDKQHVISEVKRILKDDGRVIIIDW 113 (170)
T ss_dssp TCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 2345788899999999999998643
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.76 E-value=2.3e-05 Score=69.66 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=69.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++. .|..+|+++|+|+.+++.+++++..+ ++++.++|+..+. .....||+|+...
T Consensus 52 ~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~d~~~~~----~~~~~fD~v~~~~~l~ 118 (243)
T 3bkw_A 52 CGFGWFCRWAHE-HGASYVLGLDLSEKMLARARAAGPDT--------GITYERADLDKLH----LPQDSFDLAYSSLALH 118 (243)
T ss_dssp CTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHTSCSS--------SEEEEECCGGGCC----CCTTCEEEEEEESCGG
T ss_pred CcCCHHHHHHHH-CCCCeEEEEcCCHHHHHHHHHhcccC--------CceEEEcChhhcc----CCCCCceEEEEecccc
Confidence 799999998887 57768999999999999999876532 4677888887532 2245799988764
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+..++..+.+.|++||.|.++.
T Consensus 119 ~~~~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 119 YVEDVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccchHHHHHHHHHHhcCcCcEEEEEe
Confidence 2234577888899999999999854
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=97.75 E-value=4e-05 Score=68.08 Aligned_cols=88 Identities=17% Similarity=0.114 Sum_probs=68.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--y 79 (341)
||+|..++.++. . .+|+++|+|+.+++.+++|+..++. ++++.++|+.++. . ...||+|++.+ +
T Consensus 42 ~G~G~~~~~l~~-~--~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~----~-~~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 42 CGTGTATLLLAD-H--YEVTGVDLSEEMLEIAQEKAMETNR------HVDFWVQDMRELE----L-PEPVDAITILCDSL 107 (243)
T ss_dssp CTTCHHHHHHTT-T--SEEEEEESCHHHHHHHHHHHHHTTC------CCEEEECCGGGCC----C-SSCEEEEEECTTGG
T ss_pred CCCCHHHHHHhh-C--CeEEEEECCHHHHHHHHHhhhhcCC------ceEEEEcChhhcC----C-CCCcCEEEEeCCch
Confidence 799999998887 3 6899999999999999999987653 4678889986531 1 35799999853 2
Q ss_pred --C-C---CHHHHHHHHHhcccCCEEEEEe
Q 019408 80 --G-S---DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 --g-s---p~~fld~al~~v~~gGlL~vt~ 103 (341)
- . +..++..+.+.|++||.|.++.
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 1 1 2346677788999999999844
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.75 E-value=3.5e-05 Score=78.58 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=75.9
Q ss_pred CccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC
Q 019408 1 MCGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID 77 (341)
Q Consensus 1 fagsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD 77 (341)
.||||.+-+.++.. .+...++.+|+++.++++++.|+.++++. .....+.++|+...-- ......+||+|+..
T Consensus 229 aCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~---~~~~~I~~gDtL~~d~-p~~~~~~fD~IvaN 304 (542)
T 3lkd_A 229 TMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP---IENQFLHNADTLDEDW-PTQEPTNFDGVLMN 304 (542)
T ss_dssp TCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC---GGGEEEEESCTTTSCS-CCSSCCCBSEEEEC
T ss_pred ccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC---cCccceEecceecccc-cccccccccEEEec
Confidence 48999999988775 24578999999999999999999999873 1357788999864300 00124579999999
Q ss_pred C-CCCC--------------------------HHHHHHHHHhcc-cCCEEEEEec
Q 019408 78 S-FGSD--------------------------SSFLRTVFNAVK-RDGLLYLTST 104 (341)
Q Consensus 78 P-ygsp--------------------------~~fld~al~~v~-~gGlL~vt~T 104 (341)
| |+.. ..|+..+++.|+ +||.+++-..
T Consensus 305 PPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 305 PPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp CCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred CCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 8 7531 027889999999 9999986443
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=6.5e-05 Score=69.26 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=69.3
Q ss_pred ccccHhHHHHhhhCC--CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 2 CGCGIRSLRYLAEAK--ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 2 agsG~rgir~a~e~g--a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
||||..++..++..+ ..+|+++|+|+..++.++++++..+.. .+++++++|+.++ .-+.||+|++-=
T Consensus 79 cGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~----~~v~~~~~D~~~~------~~~~~d~v~~~~~ 148 (261)
T 4gek_A 79 CSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP----TPVDVIEGDIRDI------AIENASMVVLNFT 148 (261)
T ss_dssp CTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCS----SCEEEEESCTTTC------CCCSEEEEEEESC
T ss_pred CCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccC----ceEEEeecccccc------cccccccceeeee
Confidence 799999998887422 237999999999999999999876653 5788999998653 234699987642
Q ss_pred --CCCC---HHHHHHHHHhcccCCEEEEEe
Q 019408 79 --FGSD---SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 --ygsp---~~fld~al~~v~~gGlL~vt~ 103 (341)
|-.+ ..++....+.|++||.|.++.
T Consensus 149 l~~~~~~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 149 LQFLEPSERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence 2212 135677888999999999853
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=97.70 E-value=2.5e-05 Score=69.30 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=67.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++..+. .+ .+|+++|+|+.+++.+++|+..++ ++++.++|+...+. ....||+|+++. +.
T Consensus 79 ~G~G~~~~~l~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~-------~v~~~~~d~~~~~~----~~~~fD~v~~~~~~~ 145 (231)
T 1vbf_A 79 TGIGYYTALIAE-IV-DKVVSVEINEKMYNYASKLLSYYN-------NIKLILGDGTLGYE----EEKPYDRVVVWATAP 145 (231)
T ss_dssp CTTSHHHHHHHH-HS-SEEEEEESCHHHHHHHHHHHTTCS-------SEEEEESCGGGCCG----GGCCEEEEEESSBBS
T ss_pred CCCCHHHHHHHH-Hc-CEEEEEeCCHHHHHHHHHHHhhcC-------CeEEEECCcccccc----cCCCccEEEECCcHH
Confidence 799999998887 45 789999999999999999997553 46788999876221 235799999997 22
Q ss_pred CCHHHHHHHHHhcccCCEEEEEec
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~T 104 (341)
.+.+.+.+.|++||.|+++..
T Consensus 146 ---~~~~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 146 ---TLLCKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp ---SCCHHHHHTEEEEEEEEEEEC
T ss_pred ---HHHHHHHHHcCCCcEEEEEEc
Confidence 122567889999999998643
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=7.2e-05 Score=70.71 Aligned_cols=72 Identities=18% Similarity=0.038 Sum_probs=56.6
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcC-CcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKR-EFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~-~~fDvIdlDP 78 (341)
.+|+|..++.++...+..+|+++|+|+.+++.+++|++.++ . +++++++|+..+-......+ ..||.|++||
T Consensus 34 g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~-----~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 34 TVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-D-----RVSLFKVSYREADFLLKTLGIEKVDGILMDL 106 (301)
T ss_dssp TCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-T-----TEEEEECCGGGHHHHHHHTTCSCEEEEEEEC
T ss_pred eCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-C-----cEEEEECCHHHHHHHHHhcCCCCCCEEEEcC
Confidence 48999999999885335689999999999999999998775 2 67899999876532221112 4799999999
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0001 Score=65.55 Aligned_cols=88 Identities=14% Similarity=0.090 Sum_probs=68.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++. .|+ +|+++|+|+.+++.+++|... ..+++.++|+..+ ......||+|+.--
T Consensus 62 ~G~G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~----~~~~~~fD~v~~~~~l~ 127 (242)
T 3l8d_A 62 CGDGYGTYKLSR-TGY-KAVGVDISEVMIQKGKERGEG--------PDLSFIKGDLSSL----PFENEQFEAIMAINSLE 127 (242)
T ss_dssp CTTSHHHHHHHH-TTC-EEEEEESCHHHHHHHHTTTCB--------TTEEEEECBTTBC----SSCTTCEEEEEEESCTT
T ss_pred CCCCHHHHHHHH-cCC-eEEEEECCHHHHHHHHhhccc--------CCceEEEcchhcC----CCCCCCccEEEEcChHh
Confidence 799999998887 465 799999999999999988521 3577889998753 12346899887654
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+..++..+.+.|++||.|+++.
T Consensus 128 ~~~~~~~~l~~~~~~L~pgG~l~i~~ 153 (242)
T 3l8d_A 128 WTEEPLRALNEIKRVLKSDGYACIAI 153 (242)
T ss_dssp SSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCHHHHHHHHHHHhCCCeEEEEEE
Confidence 2234578889999999999999864
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00048 Score=61.43 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=66.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++. .|+ +|+++|+|+.+++.+++| + ++.+.|+.+++... ....||+|+..-
T Consensus 50 cG~G~~~~~l~~-~~~-~v~gvD~s~~~~~~a~~~-----~--------~~~~~d~~~~~~~~--~~~~fD~i~~~~~l~ 112 (240)
T 3dli_A 50 CGRGEFLELCKE-EGI-ESIGVDINEDMIKFCEGK-----F--------NVVKSDAIEYLKSL--PDKYLDGVMISHFVE 112 (240)
T ss_dssp CTTTHHHHHHHH-HTC-CEEEECSCHHHHHHHHTT-----S--------EEECSCHHHHHHTS--CTTCBSEEEEESCGG
T ss_pred CCCCHHHHHHHh-CCC-cEEEEECCHHHHHHHHhh-----c--------ceeeccHHHHhhhc--CCCCeeEEEECCchh
Confidence 799999988777 476 499999999999998886 3 35789998876432 246899998753
Q ss_pred -CCCC--HHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGSD--SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp--~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+ ..++..+.+.|++||.|.++..
T Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (240)
T 3dli_A 113 HLDPERLFELLSLCYSKMKYSSYIVIESP 141 (240)
T ss_dssp GSCGGGHHHHHHHHHHHBCTTCCEEEEEE
T ss_pred hCCcHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2223 4778888899999999998654
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.65 E-value=5e-05 Score=69.33 Aligned_cols=93 Identities=11% Similarity=-0.034 Sum_probs=70.0
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||||......|.--| ..+|+++|++++.++.+++|++.. .++..+..|+...... ......+|+|+.|..-
T Consensus 86 ~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~-------~ni~~V~~d~~~p~~~-~~~~~~vDvVf~d~~~ 157 (233)
T 4df3_A 86 IASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR-------RNIFPILGDARFPEKY-RHLVEGVDGLYADVAQ 157 (233)
T ss_dssp CTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC-------TTEEEEESCTTCGGGG-TTTCCCEEEEEECCCC
T ss_pred CcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh-------cCeeEEEEeccCcccc-ccccceEEEEEEeccC
Confidence 799999999987534 368999999999999999987643 2456677887654322 2223579999999843
Q ss_pred C--CHHHHHHHHHhcccCCEEEEE
Q 019408 81 S--DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 s--p~~fld~al~~v~~gGlL~vt 102 (341)
. +..++..+.+.||+||.+++.
T Consensus 158 ~~~~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 158 PEQAAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ChhHHHHHHHHHHhccCCCEEEEE
Confidence 2 235778888999999999974
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=97.64 E-value=7.3e-05 Score=72.39 Aligned_cols=99 Identities=11% Similarity=0.086 Sum_probs=74.1
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHc-----C-CCCCCCccEEEEeccHHHHHHHh--hhcCCccc
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSI-----E-RGSGDEKRWVVTHFDANRVLSEC--YLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n-----~-~~~~~~~~~~v~~~DA~~~l~~~--~~~~~~fD 72 (341)
||+|..++.++...+ ..+|+++|+|+.+++.+++|++.+ + .. ..++++.++|+.++.... ......||
T Consensus 92 cG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~---~~~v~~~~~d~~~l~~~~~~~~~~~~fD 168 (383)
T 4fsd_A 92 CGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS---RSNVRFLKGFIENLATAEPEGVPDSSVD 168 (383)
T ss_dssp CTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTT---CCCEEEEESCTTCGGGCBSCCCCTTCEE
T ss_pred CccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccC---CCceEEEEccHHHhhhcccCCCCCCCEE
Confidence 799999999987532 358999999999999999999866 3 21 136788999987642100 12245899
Q ss_pred EEEeCC----CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 73 LIDIDS----FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 73 vIdlDP----ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+|+... +..+..++..+.+.|++||+|.++.
T Consensus 169 ~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 169 IVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 998776 2334578889999999999999853
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00052 Score=62.41 Aligned_cols=93 Identities=13% Similarity=-0.041 Sum_probs=61.5
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||||..+...+...| ..+|+++|+|+..++.+.+.++.. .+++++.+|+..... ...-.+.||+|+.|- .
T Consensus 85 ~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-------~nv~~i~~Da~~~~~-~~~~~~~~D~I~~d~a~ 156 (232)
T 3id6_C 85 AASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-------PNIFPLLADARFPQS-YKSVVENVDVLYVDIAQ 156 (232)
T ss_dssp CTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-------TTEEEEECCTTCGGG-TTTTCCCEEEEEECCCC
T ss_pred ecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-------CCeEEEEcccccchh-hhccccceEEEEecCCC
Confidence 799999988876423 458999999999886555555432 246788999875321 111135799999995 2
Q ss_pred CCCHHHHH-HHHHhcccCCEEEEE
Q 019408 80 GSDSSFLR-TVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 gsp~~fld-~al~~v~~gGlL~vt 102 (341)
-.....+. .+-+.|++||.|.+.
T Consensus 157 ~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 157 PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 11122233 333489999999975
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00011 Score=63.70 Aligned_cols=87 Identities=9% Similarity=-0.088 Sum_probs=67.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..+..++. .|. +|+++|+|+.+++.+++|.. ++++.++|+.++- .....||+|+..- +
T Consensus 50 cG~G~~~~~l~~-~~~-~v~gvD~s~~~~~~a~~~~~----------~~~~~~~d~~~~~----~~~~~fD~v~~~~~l~ 113 (203)
T 3h2b_A 50 SGTGRWTGHLAS-LGH-QIEGLEPATRLVELARQTHP----------SVTFHHGTITDLS----DSPKRWAGLLAWYSLI 113 (203)
T ss_dssp CTTCHHHHHHHH-TTC-CEEEECCCHHHHHHHHHHCT----------TSEEECCCGGGGG----GSCCCEEEEEEESSST
T ss_pred CCCCHHHHHHHh-cCC-eEEEEeCCHHHHHHHHHhCC----------CCeEEeCcccccc----cCCCCeEEEEehhhHh
Confidence 799999998887 566 69999999999999998722 4567889987632 2346899998854 1
Q ss_pred -C---CCHHHHHHHHHhcccCCEEEEEec
Q 019408 80 -G---SDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 -g---sp~~fld~al~~v~~gGlL~vt~T 104 (341)
- .+..++..+.+.|++||.|.++..
T Consensus 114 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 142 (203)
T 3h2b_A 114 HMGPGELPDALVALRMAVEDGGGLLMSFF 142 (203)
T ss_dssp TCCTTTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 1 235778888999999999998654
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.62 E-value=2.5e-05 Score=79.66 Aligned_cols=96 Identities=10% Similarity=-0.022 Sum_probs=72.1
Q ss_pred CccccHhHHHHhhhC-------C--------CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhh
Q 019408 1 MCGCGIRSLRYLAEA-------K--------ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECY 65 (341)
Q Consensus 1 fagsG~rgir~a~e~-------g--------a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~ 65 (341)
.||||.+-+.++... + ...++.+|+++.++++++.|+.++++. ..+.+.++|+... ..
T Consensus 252 aCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~----~~i~i~~gDtL~~---~~ 324 (544)
T 3khk_A 252 AMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID----FNFGKKNADSFLD---DQ 324 (544)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC----CBCCSSSCCTTTS---CS
T ss_pred ccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC----cccceeccchhcC---cc
Confidence 489999988875421 1 347999999999999999999999874 3344478887532 11
Q ss_pred hcCCcccEEEeCC-CCCC--------------------------------HHHHHHHHHhcccCCEEEEEe
Q 019408 66 LKREFFDLIDIDS-FGSD--------------------------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 66 ~~~~~fDvIdlDP-ygsp--------------------------------~~fld~al~~v~~gGlL~vt~ 103 (341)
....+||+|+..| |+.. -.|+..+++.|++||.+++-.
T Consensus 325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVl 395 (544)
T 3khk_A 325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLL 395 (544)
T ss_dssp CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEe
Confidence 1235899999999 8741 148999999999999988644
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.61 E-value=3.6e-05 Score=68.36 Aligned_cols=90 Identities=11% Similarity=0.137 Sum_probs=68.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..+...+......+|+++|+|+.+++.++++++.+ .++++.++|+.++.. ...||+|+... +
T Consensus 53 ~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~~~~-----~~~fD~v~~~~~l~ 120 (234)
T 3dtn_A 53 AGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN-------LKVKYIEADYSKYDF-----EEKYDMVVSALSIH 120 (234)
T ss_dssp CTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC-------TTEEEEESCTTTCCC-----CSCEEEEEEESCGG
T ss_pred CCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC-------CCEEEEeCchhccCC-----CCCceEEEEeCccc
Confidence 799999999887532468999999999999999987643 257788999875421 25899998876 2
Q ss_pred -CCCH---HHHHHHHHhcccCCEEEEEe
Q 019408 80 -GSDS---SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 -gsp~---~fld~al~~v~~gGlL~vt~ 103 (341)
-... .++..+.+.|++||.|.++.
T Consensus 121 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 121 HLEDEDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2111 36788889999999999854
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=97.61 E-value=6.6e-05 Score=67.49 Aligned_cols=89 Identities=19% Similarity=0.135 Sum_probs=68.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++. .| .+|+++|+|+.+++.+++|+ .... .++++.++|+..+- .....||+|+..-
T Consensus 48 ~G~G~~~~~l~~-~~-~~v~~vD~s~~~~~~a~~~~-~~~~-----~~~~~~~~d~~~~~----~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 48 VGTGRIALPLIA-RG-YRYIALDADAAMLEVFRQKI-AGVD-----RKVQVVQADARAIP----LPDESVHGVIVVHLWH 115 (263)
T ss_dssp CTTSTTHHHHHT-TT-CEEEEEESCHHHHHHHHHHT-TTSC-----TTEEEEESCTTSCC----SCTTCEEEEEEESCGG
T ss_pred CcCCHHHHHHHH-CC-CEEEEEECCHHHHHHHHHHh-hccC-----CceEEEEcccccCC----CCCCCeeEEEECCchh
Confidence 799999999987 45 47999999999999999998 2322 36788899986431 2345799998753
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEE
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt 102 (341)
+..+..++..+.+.|++||.|.++
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 116 LVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 223457788889999999999986
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.61 E-value=4.3e-05 Score=67.81 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=68.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++. .|. +|+++|+|+.+++.+++|+..++. ++++.++|+..+. . ...||+|+...
T Consensus 46 ~G~G~~~~~l~~-~~~-~~~~~D~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~----~-~~~fD~v~~~~~~l 112 (246)
T 1y8c_A 46 CGTGNLTENLCP-KFK-NTWAVDLSQEMLSEAENKFRSQGL------KPRLACQDISNLN----I-NRKFDLITCCLDST 112 (246)
T ss_dssp CTTSTTHHHHGG-GSS-EEEEECSCHHHHHHHHHHHHHTTC------CCEEECCCGGGCC----C-SCCEEEEEECTTGG
T ss_pred CCCCHHHHHHHH-CCC-cEEEEECCHHHHHHHHHHHhhcCC------CeEEEecccccCC----c-cCCceEEEEcCccc
Confidence 799999999887 464 699999999999999999987654 4577889987532 1 25799999854
Q ss_pred -CC----CCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FG----SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -yg----sp~~fld~al~~v~~gGlL~vt~ 103 (341)
+- .+..++..+.+.|++||.|.++.
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 22 12356677788999999999844
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.61 E-value=3.2e-05 Score=69.29 Aligned_cols=90 Identities=13% Similarity=0.071 Sum_probs=69.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..++.++. .+..+|+++|+|+.+++.+++|+..+ ..+++.++|+..+ ......||+|+.-- +
T Consensus 102 ~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~~----~~~~~~fD~v~~~~~l~ 169 (254)
T 1xtp_A 102 AGIGRITKNLLT-KLYATTDLLEPVKHMLEEAKRELAGM-------PVGKFILASMETA----TLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp CTTTHHHHHTHH-HHCSEEEEEESCHHHHHHHHHHTTTS-------SEEEEEESCGGGC----CCCSSCEEEEEEESCGG
T ss_pred CCcCHHHHHHHH-hhcCEEEEEeCCHHHHHHHHHHhccC-------CceEEEEccHHHC----CCCCCCeEEEEEcchhh
Confidence 799999998887 46778999999999999999988643 2577889998653 12345899998755 1
Q ss_pred -C---CCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 -G---SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 -g---sp~~fld~al~~v~~gGlL~vt~ 103 (341)
- .+..++..+.+.|++||.|+++.
T Consensus 170 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 197 (254)
T 1xtp_A 170 YLTDADFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 1 12466778889999999999864
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=4.7e-05 Score=70.63 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=70.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++. .|. +|+++|+|+.+++.+++|+..+++.. ..+++++++|+.++- . ...||+|++..
T Consensus 91 cG~G~~~~~l~~-~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~--~~~v~~~~~d~~~~~----~-~~~fD~v~~~~~~~ 161 (299)
T 3g2m_A 91 AGMGRLTFPFLD-LGW-EVTALELSTSVLAAFRKRLAEAPADV--RDRCTLVQGDMSAFA----L-DKRFGTVVISSGSI 161 (299)
T ss_dssp CTTTTTHHHHHT-TTC-CEEEEESCHHHHHHHHHHHHTSCHHH--HTTEEEEECBTTBCC----C-SCCEEEEEECHHHH
T ss_pred ccCCHHHHHHHH-cCC-eEEEEECCHHHHHHHHHHHhhccccc--ccceEEEeCchhcCC----c-CCCcCEEEECCccc
Confidence 799999999988 464 69999999999999999998764200 025788999987631 1 46899888542
Q ss_pred -CCCC---HHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGSD---SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp---~~fld~al~~v~~gGlL~vt~T 104 (341)
+-.+ ..++..+.+.|++||.|.++.-
T Consensus 162 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 191 (299)
T 3g2m_A 162 NELDEADRRGLYASVREHLEPGGKFLLSLA 191 (299)
T ss_dssp TTSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 2222 4667788899999999998543
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=97.59 E-value=6.3e-05 Score=66.61 Aligned_cols=87 Identities=14% Similarity=0.107 Sum_probs=67.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++..+. .+. +|+++|+|+.+++.+++++.. .+++.++|+.++. ....||+|++--
T Consensus 51 cG~G~~~~~l~~-~~~-~v~gvD~s~~~~~~a~~~~~~---------~v~~~~~d~~~~~-----~~~~fD~v~~~~~l~ 114 (250)
T 2p7i_A 51 SFKGDFTSRLQE-HFN-DITCVEASEEAISHAQGRLKD---------GITYIHSRFEDAQ-----LPRRYDNIVLTHVLE 114 (250)
T ss_dssp CTTSHHHHHHTT-TCS-CEEEEESCHHHHHHHHHHSCS---------CEEEEESCGGGCC-----CSSCEEEEEEESCGG
T ss_pred CCCCHHHHHHHH-hCC-cEEEEeCCHHHHHHHHHhhhC---------CeEEEEccHHHcC-----cCCcccEEEEhhHHH
Confidence 799999998887 465 699999999999999987642 3567888987651 246799998732
Q ss_pred -CCCCHHHHHHHH-HhcccCCEEEEEec
Q 019408 79 -FGSDSSFLRTVF-NAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp~~fld~al-~~v~~gGlL~vt~T 104 (341)
...+..++..+. +.|++||.|.++..
T Consensus 115 ~~~~~~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 115 HIDDPVALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp GCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhcCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 122457888899 99999999998653
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00012 Score=65.56 Aligned_cols=92 Identities=12% Similarity=0.043 Sum_probs=68.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhh-hcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECY-LKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~-~~~~~fDvIdlDP-y 79 (341)
||+|..++.++. .+. +|+++|+|+.+++.+++|+.. .++++.++|+.++-.... ..+..||+|+..- +
T Consensus 65 cG~G~~~~~la~-~~~-~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~ 134 (245)
T 3ggd_A 65 CGNGTQTKFLSQ-FFP-RVIGLDVSKSALEIAAKENTA--------ANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGF 134 (245)
T ss_dssp CTTSHHHHHHHH-HSS-CEEEEESCHHHHHHHHHHSCC--------TTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSS
T ss_pred CCCCHHHHHHHH-hCC-CEEEEECCHHHHHHHHHhCcc--------cCceEEECcccccccccccccccCccEEEEcchh
Confidence 799999999988 465 799999999999999998731 257788999877543211 1122599998875 2
Q ss_pred --CC---CHHHHHHHHHhcccCCEEEEEe
Q 019408 80 --GS---DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 --gs---p~~fld~al~~v~~gGlL~vt~ 103 (341)
-. +..++..+.+.|++||.|++..
T Consensus 135 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 135 HHIPVEKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp TTSCGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 21 2467888889999999988754
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=7.5e-05 Score=65.05 Aligned_cols=87 Identities=16% Similarity=0.077 Sum_probs=67.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..+..++.. |+ +|+++|+|+.+++.+++ ++. .++++.++|+..+ .....||+|+..-
T Consensus 55 ~G~G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~----~~~-----~~~~~~~~d~~~~-----~~~~~~D~v~~~~~l~ 118 (218)
T 3ou2_A 55 SGTGYWTRHLSGL-AD-RVTALDGSAEMIAEAGR----HGL-----DNVEFRQQDLFDW-----TPDRQWDAVFFAHWLA 118 (218)
T ss_dssp CTTSHHHHHHHHH-SS-EEEEEESCHHHHHHHGG----GCC-----TTEEEEECCTTSC-----CCSSCEEEEEEESCGG
T ss_pred CCCCHHHHHHHhc-CC-eEEEEeCCHHHHHHHHh----cCC-----CCeEEEecccccC-----CCCCceeEEEEechhh
Confidence 7999999998884 65 89999999999999988 443 3678899998765 2356899998865
Q ss_pred CCCC---HHHHHHHHHhcccCCEEEEEec
Q 019408 79 FGSD---SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 ygsp---~~fld~al~~v~~gGlL~vt~T 104 (341)
+-.. ..++..+.+.|++||.|.++..
T Consensus 119 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 119 HVPDDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 1211 4567788899999999998643
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00014 Score=67.73 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=68.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||+|.+++-++.+.+..+++++|+|+.+++++++|+..|++ ..++...|... ...+..||+|.+==
T Consensus 141 CG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~------~~~~~v~D~~~-----~~p~~~~DvaL~lk--- 206 (281)
T 3lcv_B 141 CGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV------PHRTNVADLLE-----DRLDEPADVTLLLK--- 206 (281)
T ss_dssp CTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC------CEEEEECCTTT-----SCCCSCCSEEEETT---
T ss_pred cCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC------CceEEEeeecc-----cCCCCCcchHHHHH---
Confidence 79999999999987788999999999999999999999988 25666777542 22356899996543
Q ss_pred CHHHHH--------HHHHhcccCCEEEEEecCCCCCCCC
Q 019408 82 DSSFLR--------TVFNAVKRDGLLYLTSTDGYSSGGH 112 (341)
Q Consensus 82 p~~fld--------~al~~v~~gGlL~vt~TD~~~l~g~ 112 (341)
..+.|+ ..++.|+.+|++. +-|+..+.|.
T Consensus 207 ti~~Le~q~kg~g~~ll~aL~~~~vvV--Sfp~ksl~Gr 243 (281)
T 3lcv_B 207 TLPCLETQQRGSGWEVIDIVNSPNIVV--TFPTKSLGQR 243 (281)
T ss_dssp CHHHHHHHSTTHHHHHHHHSSCSEEEE--EEECC-----
T ss_pred HHHHhhhhhhHHHHHHHHHhCCCCEEE--eccchhhcCC
Confidence 334443 5678899988877 3355556664
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=7.7e-05 Score=68.42 Aligned_cols=95 Identities=8% Similarity=0.057 Sum_probs=64.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHH----------cCCCC--CCCccEEEEeccHHHHHHHhhhcCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS----------IERGS--GDEKRWVVTHFDANRVLSECYLKRE 69 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~----------n~~~~--~~~~~~~v~~~DA~~~l~~~~~~~~ 69 (341)
||+|..++..+. .|. +|+++|+|+.+++.++++... +++.. ....++++.++|+.++-.. ...
T Consensus 77 CG~G~~~~~La~-~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~---~~~ 151 (252)
T 2gb4_A 77 CGKAIEMKWFAD-RGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRA---NIG 151 (252)
T ss_dssp CTTCTHHHHHHH-TTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGG---CCC
T ss_pred CCCcHHHHHHHH-CCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCcc---cCC
Confidence 799999988887 576 799999999999999776531 00000 0013578999999864321 125
Q ss_pred cccEEEeCC-CC--CC---HHHHHHHHHhcccCCEEEE
Q 019408 70 FFDLIDIDS-FG--SD---SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 70 ~fDvIdlDP-yg--sp---~~fld~al~~v~~gGlL~v 101 (341)
.||+|+.-- |. .+ ..++....+.|++||.|.+
T Consensus 152 ~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l 189 (252)
T 2gb4_A 152 KFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLV 189 (252)
T ss_dssp CEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred CEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 799987321 21 11 2467788899999999964
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=3.9e-05 Score=68.97 Aligned_cols=91 Identities=13% Similarity=0.108 Sum_probs=69.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..++.++...| .+|+++|+|+.+++.+++++... .++++.++|+.++ ......||+|+..- +
T Consensus 64 ~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~~----~~~~~~fD~v~~~~~l~ 131 (266)
T 3ujc_A 64 SGLGGGCMYINEKYG-AHTHGIDICSNIVNMANERVSGN-------NKIIFEANDILTK----EFPENNFDLIYSRDAIL 131 (266)
T ss_dssp CTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHTCCSC-------TTEEEEECCTTTC----CCCTTCEEEEEEESCGG
T ss_pred CCCCHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhhcC-------CCeEEEECccccC----CCCCCcEEEEeHHHHHH
Confidence 799999999988434 57999999999999999987643 2578889998753 12346899998764 1
Q ss_pred ----CCCHHHHHHHHHhcccCCEEEEEec
Q 019408 80 ----GSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 ----gsp~~fld~al~~v~~gGlL~vt~T 104 (341)
..+..++..+.+.|++||.|.++..
T Consensus 132 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 132 ALSLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 2234667788899999999998643
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.55 E-value=8.3e-05 Score=64.98 Aligned_cols=84 Identities=24% Similarity=0.298 Sum_probs=64.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..++.++. .|+ +|+++|+|+.+++.+++|+ ++ .+.++|+..+- ....||+|+... +
T Consensus 52 cG~G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~~~---~~--------~~~~~d~~~~~-----~~~~fD~v~~~~~l~ 113 (211)
T 3e23_A 52 CGAGYQAEAMLA-AGF-DVDATDGSPELAAEASRRL---GR--------PVRTMLFHQLD-----AIDAYDAVWAHACLL 113 (211)
T ss_dssp CTTSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHH---TS--------CCEECCGGGCC-----CCSCEEEEEECSCGG
T ss_pred CCCCHHHHHHHH-cCC-eEEEECCCHHHHHHHHHhc---CC--------ceEEeeeccCC-----CCCcEEEEEecCchh
Confidence 799999999987 465 7999999999999999987 23 23466665432 356899998876 2
Q ss_pred -C---CCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 -G---SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 -g---sp~~fld~al~~v~~gGlL~vt~ 103 (341)
- .+..++..+.+.|++||.|+++.
T Consensus 114 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 141 (211)
T 3e23_A 114 HVPRDELADVLKLIWRALKPGGLFYASY 141 (211)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 12357788889999999999864
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.55 E-value=9.5e-05 Score=62.89 Aligned_cols=87 Identities=16% Similarity=0.043 Sum_probs=66.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..++.++. .|. +|+++|+|+.+++.+++|+. ++++.+.|+..+ ......||+|+..| .
T Consensus 55 ~G~G~~~~~l~~-~~~-~v~~~D~~~~~~~~a~~~~~----------~~~~~~~d~~~~----~~~~~~~D~i~~~~~~~ 118 (195)
T 3cgg_A 55 CGQGRIGGYLSK-QGH-DVLGTDLDPILIDYAKQDFP----------EARWVVGDLSVD----QISETDFDLIVSAGNVM 118 (195)
T ss_dssp CTTTHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHCT----------TSEEEECCTTTS----CCCCCCEEEEEECCCCG
T ss_pred CCCCHHHHHHHH-CCC-cEEEEcCCHHHHHHHHHhCC----------CCcEEEcccccC----CCCCCceeEEEECCcHH
Confidence 789999998887 454 79999999999999999763 245678887653 12245799999984 2
Q ss_pred --CC---CHHHHHHHHHhcccCCEEEEEec
Q 019408 80 --GS---DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 --gs---p~~fld~al~~v~~gGlL~vt~T 104 (341)
-. ...++..+.+.|++||.+.++..
T Consensus 119 ~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~ 148 (195)
T 3cgg_A 119 GFLAEDGREPALANIHRALGADGRAVIGFG 148 (195)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcChHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 11 14677888899999999998543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=97.52 E-value=4.2e-05 Score=67.30 Aligned_cols=94 Identities=6% Similarity=-0.078 Sum_probs=62.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCC--CC-----CCccEEEEeccHHHHHHHhhhcCCcccEE
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERG--SG-----DEKRWVVTHFDANRVLSECYLKREFFDLI 74 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~--~~-----~~~~~~v~~~DA~~~l~~~~~~~~~fDvI 74 (341)
||+|..++..+. .|. +|+++|+|+.+++.++++.+..... .+ ...++++.++|+.++-... ...||+|
T Consensus 31 CG~G~~~~~la~-~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~---~~~fD~v 105 (203)
T 1pjz_A 31 CGKSQDMSWLSG-QGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD---IGHCAAF 105 (203)
T ss_dssp TCCSHHHHHHHH-HCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH---HHSEEEE
T ss_pred CCCcHhHHHHHH-CCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc---CCCEEEE
Confidence 799999998887 576 7999999999999999876531000 00 0025678899987653210 1379998
Q ss_pred EeC-CCCC-C----HHHHHHHHHhcccCCEEE
Q 019408 75 DID-SFGS-D----SSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 75 dlD-Pygs-p----~~fld~al~~v~~gGlL~ 100 (341)
+.- .+.. + ..++....+.|++||.+.
T Consensus 106 ~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~ 137 (203)
T 1pjz_A 106 YDRAAMIALPADMRERYVQHLEALMPQACSGL 137 (203)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred EECcchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 732 2211 1 136677788999999743
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00011 Score=66.91 Aligned_cols=97 Identities=15% Similarity=0.093 Sum_probs=67.5
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHH------HHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHH-HhhhcCCcccE
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDA------HRRVILGNLKSIERGSGDEKRWVVTHFDANRVLS-ECYLKREFFDL 73 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~------A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~-~~~~~~~~fDv 73 (341)
||+|..++.++...|. .+|+++|+|+. .++.+++|++.+++. .++++.++| ++.. ........||+
T Consensus 52 cG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~----~~v~~~~~d--~~~~~~~~~~~~~fD~ 125 (275)
T 3bkx_A 52 CGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG----DRLTVHFNT--NLSDDLGPIADQHFDR 125 (275)
T ss_dssp CTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG----GGEEEECSC--CTTTCCGGGTTCCCSE
T ss_pred CCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC----CceEEEECC--hhhhccCCCCCCCEEE
Confidence 7999999999885344 68999999997 999999999987763 468888988 1111 11112457999
Q ss_pred EEeCC----CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 74 IDIDS----FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 74 IdlDP----ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
|+... +..+..+++..-.++++||.|.++..
T Consensus 126 v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 126 VVLAHSLWYFASANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp EEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred EEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 98865 23343444443344555999998654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=97.49 E-value=5.4e-05 Score=66.41 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=65.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..+..++. .|. +|+++|+|+.+++.+++++. . ++++.++|+.++. .. ..||+|+..- +
T Consensus 54 cG~G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~~~~-~--------~~~~~~~d~~~~~----~~-~~fD~v~~~~~l~ 117 (220)
T 3hnr_A 54 VGTGNLTNKLLL-AGR-TVYGIEPSREMRMIAKEKLP-K--------EFSITEGDFLSFE----VP-TSIDTIVSTYAFH 117 (220)
T ss_dssp CTTSHHHHHHHH-TTC-EEEEECSCHHHHHHHHHHSC-T--------TCCEESCCSSSCC----CC-SCCSEEEEESCGG
T ss_pred CCCCHHHHHHHh-CCC-eEEEEeCCHHHHHHHHHhCC-C--------ceEEEeCChhhcC----CC-CCeEEEEECcchh
Confidence 799999999887 454 79999999999999999876 2 3456788886532 12 5899998875 2
Q ss_pred --CCCHH--HHHHHHHhcccCCEEEEEe
Q 019408 80 --GSDSS--FLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 --gsp~~--fld~al~~v~~gGlL~vt~ 103 (341)
..+.. ++..+.+.|++||.|.++.
T Consensus 118 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 145 (220)
T 3hnr_A 118 HLTDDEKNVAIAKYSQLLNKGGKIVFAD 145 (220)
T ss_dssp GSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 11222 7888889999999999864
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=97.47 E-value=1.7e-05 Score=72.62 Aligned_cols=101 Identities=16% Similarity=0.006 Sum_probs=63.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCC-------------CC-----------CccEE-EEecc
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGS-------------GD-----------EKRWV-VTHFD 56 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~-------------~~-----------~~~~~-v~~~D 56 (341)
||+|+..+..+. .|+.+|+++|+|+.+++.++++++.+...- +. ...++ +.+.|
T Consensus 64 CG~G~~~~~~~~-~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D 142 (263)
T 2a14_A 64 SGPTIYQVLAAC-DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCD 142 (263)
T ss_dssp CTTCCGGGTTGG-GTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECC
T ss_pred CCccHHHHHHHH-hhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEecc
Confidence 688888877766 588899999999999999999987542100 00 01122 66777
Q ss_pred HHHHHHHhhhcCCcccEEEeC-------CC-CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 57 ANRVLSECYLKREFFDLIDID-------SF-GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 57 A~~~l~~~~~~~~~fDvIdlD-------Py-gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+.+...........||+|..= |. ......+....++||+||.|+++.
T Consensus 143 ~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 143 VHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp TTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 654210000013479998762 20 111245566678999999999853
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=7.4e-05 Score=77.38 Aligned_cols=88 Identities=26% Similarity=0.213 Sum_probs=68.5
Q ss_pred ccccHh---HHHHhhhCCCC--EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe
Q 019408 2 CGCGIR---SLRYLAEAKAD--FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI 76 (341)
Q Consensus 2 agsG~r---gir~a~e~ga~--~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl 76 (341)
||+|++ +++++.+ ++. +|+++|.|+.|. ..+++++.|+.. ++++|+++|+.++ .-+++.|+|+-
T Consensus 366 aGrGpLv~~al~A~a~-~~~~vkVyAVEknp~A~-~a~~~v~~N~~~----dkVtVI~gd~eev-----~LPEKVDIIVS 434 (637)
T 4gqb_A 366 AGRGPLVNASLRAAKQ-ADRRIKLYAVEKNPNAV-VTLENWQFEEWG----SQVTVVSSDMREW-----VAPEKADIIVS 434 (637)
T ss_dssp CTTSHHHHHHHHHHHH-TTCEEEEEEEESCHHHH-HHHHHHHHHTTG----GGEEEEESCTTTC-----CCSSCEEEEEC
T ss_pred CCCcHHHHHHHHHHHh-cCCCcEEEEEECCHHHH-HHHHHHHhccCC----CeEEEEeCcceec-----cCCcccCEEEE
Confidence 799998 6666664 433 689999999776 567789999985 7899999999765 23679999999
Q ss_pred CCCCCC------HHHHHHHHHhcccCCEEE
Q 019408 77 DSFGSD------SSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 77 DPygsp------~~fld~al~~v~~gGlL~ 100 (341)
...|+- -.-++++=+.|++||++.
T Consensus 435 EwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 435 ELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 997651 134566667899999987
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00019 Score=66.42 Aligned_cols=90 Identities=12% Similarity=0.004 Sum_probs=61.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||||..++.++. +|+ +|+++|+|+.+++.+++|++.+.+ ...+...+.. .. ......||+|+.+. +.
T Consensus 54 cGtG~~a~~La~-~g~-~V~gvD~S~~ml~~Ar~~~~~~~v------~~~~~~~~~~-~~---~~~~~~fD~Vv~~~~l~ 121 (261)
T 3iv6_A 54 ASTRFLIEKALE-RGA-SVTVFDFSQRMCDDLAEALADRCV------TIDLLDITAE-IP---KELAGHFDFVLNDRLIN 121 (261)
T ss_dssp TTCHHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHTSSSCC------EEEECCTTSC-CC---GGGTTCCSEEEEESCGG
T ss_pred CcchHHHHHHHh-cCC-EEEEEECCHHHHHHHHHHHHhccc------eeeeeecccc-cc---cccCCCccEEEEhhhhH
Confidence 799999999987 565 799999999999999999875422 2333222220 00 01135799999997 21
Q ss_pred --CC---HHHHHHHHHhcccCCEEEEEec
Q 019408 81 --SD---SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 --sp---~~fld~al~~v~~gGlL~vt~T 104 (341)
.+ ...+....+++ +||.|+++.-
T Consensus 122 ~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 122 RFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp GSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 11 12455566778 9999998653
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00011 Score=65.83 Aligned_cols=87 Identities=14% Similarity=0.153 Sum_probs=66.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++......+|+++|+|+..++.+++|. .++++.++|+..+. ....||+|+...
T Consensus 42 ~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~~~-----~~~~fD~v~~~~~l~ 106 (259)
T 2p35_A 42 CGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL----------PNTNFGKADLATWK-----PAQKADLLYANAVFQ 106 (259)
T ss_dssp CTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS----------TTSEEEECCTTTCC-----CSSCEEEEEEESCGG
T ss_pred CcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----------CCcEEEECChhhcC-----ccCCcCEEEEeCchh
Confidence 799999998887422346999999999999999881 24567888987542 245799998865
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+..++..+.+.|++||.|.++.
T Consensus 107 ~~~~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 107 WVPDHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp GSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred hCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence 2234577888889999999999855
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.41 E-value=9.3e-05 Score=65.84 Aligned_cols=82 Identities=18% Similarity=0.155 Sum_probs=64.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc-CCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK-REFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~-~~~fDvIdlDPyg 80 (341)
||+|..++.++.. |+ +|+++|+|+.+++.+++| . .++++.++|+.+.+. .. ...||+|+..+
T Consensus 57 cG~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~-----~-----~~~~~~~~d~~~~~~---~~~~~~fD~v~~~~-- 119 (226)
T 3m33_A 57 CGHGPDAARFGPQ-AA-RWAAYDFSPELLKLARAN-----A-----PHADVYEWNGKGELP---AGLGAPFGLIVSRR-- 119 (226)
T ss_dssp CTTSHHHHHHGGG-SS-EEEEEESCHHHHHHHHHH-----C-----TTSEEEECCSCSSCC---TTCCCCEEEEEEES--
T ss_pred CCCCHHHHHHHHc-CC-EEEEEECCHHHHHHHHHh-----C-----CCceEEEcchhhccC---CcCCCCEEEEEeCC--
Confidence 7999999999884 64 899999999999999998 2 245678888853321 12 35899999874
Q ss_pred CCHHHHHHHHHhcccCCEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~ 100 (341)
.+..++..+.+.|++||.|.
T Consensus 120 ~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 120 GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp CCSGGGGGHHHHEEEEEEEE
T ss_pred CHHHHHHHHHHHcCCCcEEE
Confidence 23477888889999999999
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=5.8e-05 Score=73.24 Aligned_cols=84 Identities=18% Similarity=0.101 Sum_probs=65.3
Q ss_pred ccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||||.+++.++... ...+|+++|+|+.+++.+ . ++++.++|+.... ...+||+|+.+| |
T Consensus 48 cGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~-----~~~~~~~D~~~~~-----~~~~fD~Ii~NPPy 108 (421)
T 2ih2_A 48 CAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------P-----WAEGILADFLLWE-----PGEAFDLILGNPPY 108 (421)
T ss_dssp CTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------T-----TEEEEESCGGGCC-----CSSCEEEEEECCCC
T ss_pred CCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------C-----CCcEEeCChhhcC-----ccCCCCEEEECcCc
Confidence 89999999998743 356899999999998766 1 4578899987532 235899999998 7
Q ss_pred CCCH--------------------------------HHHHHHHHhcccCCEEEEEec
Q 019408 80 GSDS--------------------------------SFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gsp~--------------------------------~fld~al~~v~~gGlL~vt~T 104 (341)
+... .|++.+++.|++||.+++...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 109 GIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 5321 568889999999999997543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=5.6e-05 Score=68.44 Aligned_cols=90 Identities=9% Similarity=0.049 Sum_probs=64.9
Q ss_pred ccccHhHHHHhhh----CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHH--HHHhhhcCCcccEEE
Q 019408 2 CGCGIRSLRYLAE----AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV--LSECYLKREFFDLID 75 (341)
Q Consensus 2 agsG~rgir~a~e----~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~--l~~~~~~~~~fDvId 75 (341)
||||..++..++. ....+|+++|+|+.+++.++ + .. .+++++++|+.+. +... ....||+|+
T Consensus 90 ~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-~-----~~----~~v~~~~gD~~~~~~l~~~--~~~~fD~I~ 157 (236)
T 2bm8_A 90 VYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-S-----DM----ENITLHQGDCSDLTTFEHL--REMAHPLIF 157 (236)
T ss_dssp CTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-G-----GC----TTEEEEECCSSCSGGGGGG--SSSCSSEEE
T ss_pred CCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-c-----cC----CceEEEECcchhHHHHHhh--ccCCCCEEE
Confidence 7999999988874 12468999999999988776 1 11 3678899998764 3221 223699999
Q ss_pred eCCC-CCCHHHHHHHHH-hcccCCEEEEEe
Q 019408 76 IDSF-GSDSSFLRTVFN-AVKRDGLLYLTS 103 (341)
Q Consensus 76 lDPy-gsp~~fld~al~-~v~~gGlL~vt~ 103 (341)
+|.- .....++..+.+ .|++||+|.+..
T Consensus 158 ~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 158 IDNAHANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp EESSCSSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred ECCchHhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 9873 223356677776 999999999843
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=3e-05 Score=69.83 Aligned_cols=101 Identities=16% Similarity=0.091 Sum_probs=68.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCC-------------CCC-----------CccE-EEEecc
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERG-------------SGD-----------EKRW-VVTHFD 56 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~-------------~~~-----------~~~~-~v~~~D 56 (341)
||+|..++..+. .|..+|+++|+|+.+++.++++++.++.. .+. ..++ ++.+.|
T Consensus 65 cG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d 143 (265)
T 2i62_A 65 SGPTIYQLLSAC-ESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCD 143 (265)
T ss_dssp CTTCCGGGTTGG-GTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECC
T ss_pred CCccHHHHHHhh-cccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEee
Confidence 789999988887 57678999999999999999998754210 000 0126 788888
Q ss_pred HHHHHHHhhhcCCcccEEEeCC-CC-------CCHHHHHHHHHhcccCCEEEEEe
Q 019408 57 ANRVLSECYLKREFFDLIDIDS-FG-------SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 57 A~~~l~~~~~~~~~fDvIdlDP-yg-------sp~~fld~al~~v~~gGlL~vt~ 103 (341)
+.............||+|+.-- +. .+..++..+.+.|++||.|.++.
T Consensus 144 ~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 198 (265)
T 2i62_A 144 VTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD 198 (265)
T ss_dssp TTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred eccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence 8754211111125799987642 11 13456777788999999999854
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=6.5e-05 Score=68.04 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=64.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--y 79 (341)
||+|..++.++. .|. +|+++|+|+.+++.+++++. ++++.++|+.++. . ...||+|+... +
T Consensus 59 cG~G~~~~~l~~-~~~-~v~gvD~s~~~~~~a~~~~~----------~~~~~~~d~~~~~----~-~~~fD~v~~~~~~l 121 (263)
T 3pfg_A 59 CGTGMHLRHLAD-SFG-TVEGLELSADMLAIARRRNP----------DAVLHHGDMRDFS----L-GRRFSAVTCMFSSI 121 (263)
T ss_dssp CTTSHHHHHHTT-TSS-EEEEEESCHHHHHHHHHHCT----------TSEEEECCTTTCC----C-SCCEEEEEECTTGG
T ss_pred CcCCHHHHHHHH-cCC-eEEEEECCHHHHHHHHhhCC----------CCEEEECChHHCC----c-cCCcCEEEEcCchh
Confidence 799999999987 464 79999999999999999754 3457788887532 1 46899998863 2
Q ss_pred C---C---CHHHHHHHHHhcccCCEEEEE
Q 019408 80 G---S---DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 g---s---p~~fld~al~~v~~gGlL~vt 102 (341)
. + ...++..+.+.|++||.|+++
T Consensus 122 ~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 122 GHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp GGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 1 224577888999999999984
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00018 Score=62.67 Aligned_cols=85 Identities=13% Similarity=0.024 Sum_probs=63.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..+... |..+|+++|+|+.+++.+++|+ . .+++.++|+..+ ......||+|++.-
T Consensus 45 ~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~--~--------~~~~~~~d~~~~----~~~~~~fD~v~~~~~l~ 106 (211)
T 2gs9_A 45 AGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA--P--------EATWVRAWGEAL----PFPGESFDVVLLFTTLE 106 (211)
T ss_dssp CTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC--T--------TSEEECCCTTSC----CSCSSCEEEEEEESCTT
T ss_pred CCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC--C--------CcEEEEcccccC----CCCCCcEEEEEEcChhh
Confidence 6888877655 5568999999999999999987 2 235678887642 12345799988764
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+..++..+.+.|++||.|.++..
T Consensus 107 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 107 FVEDVERVLLEARRVLRPGGALVVGVL 133 (211)
T ss_dssp TCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHcCCCCEEEEEec
Confidence 22355778888999999999998643
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00062 Score=63.97 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=64.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCc---cEEEEeccH----HHH-HHHhhhcCCcccE
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEK---RWVVTHFDA----NRV-LSECYLKREFFDL 73 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~---~~~v~~~DA----~~~-l~~~~~~~~~fDv 73 (341)
||+|.....++. .+..+|+.+|+|+.+++.+++.+...+.. ... .+++.+.|+ ... |... .....||+
T Consensus 57 CG~G~~l~~~~~-~~~~~v~GiD~S~~~l~~A~~~~~~~~~~--~~~~~~~~~f~~~d~~~d~~~~~l~~~-~~~~~FD~ 132 (302)
T 2vdw_A 57 FGNGADLEKYFY-GEIALLVATDPDADAIARGNERYNKLNSG--IKTKYYKFDYIQETIRSDTFVSSVREV-FYFGKFNI 132 (302)
T ss_dssp CTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHCC------CCCEEEEEECCTTSSSHHHHHHTT-CCSSCEEE
T ss_pred cCCcHhHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHhcccc--ccccccccchhhhhcccchhhhhhhcc-ccCCCeeE
Confidence 688877777776 46678999999999999999988755431 000 134445554 321 2211 12358999
Q ss_pred EEe--------CCCCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 74 IDI--------DSFGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 74 Idl--------DPygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
|.. ++-. ...++..+.+.|++||++.++..
T Consensus 133 V~~~~~lhy~~~~~~-~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 133 IDWQFAIHYSFHPRH-YATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp EEEESCGGGTCSTTT-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECchHHHhCCHHH-HHHHHHHHHHHcCCCCEEEEEeC
Confidence 963 3321 24678888899999999998654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00017 Score=67.72 Aligned_cols=76 Identities=16% Similarity=0.149 Sum_probs=55.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++..+. .+ .+|+++|+|+.+++.+++|++.++. .+++++++|+.++. ...||+|+.|| |.
T Consensus 51 ~G~G~lt~~La~-~~-~~v~~vDi~~~~~~~a~~~~~~~~~-----~~v~~~~~D~~~~~------~~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 51 CGTGNLTVKLLP-LA-KKVITIDIDSRMISEVKKRCLYEGY-----NNLEVYEGDAIKTV------FPKFDVCTANIPYK 117 (299)
T ss_dssp CTTSTTHHHHTT-TS-SEEEEECSCHHHHHHHHHHHHHTTC-----CCEEC----CCSSC------CCCCSEEEEECCGG
T ss_pred CcCcHHHHHHHh-cC-CEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEECchhhCC------cccCCEEEEcCCcc
Confidence 799999999887 44 5899999999999999999998776 36788899986531 23799999998 54
Q ss_pred CCHHHHHHHH
Q 019408 81 SDSSFLRTVF 90 (341)
Q Consensus 81 sp~~fld~al 90 (341)
...+.+...+
T Consensus 118 ~~~~~~~~ll 127 (299)
T 2h1r_A 118 ISSPLIFKLI 127 (299)
T ss_dssp GHHHHHHHHH
T ss_pred cccHHHHHHH
Confidence 4445444433
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00034 Score=72.97 Aligned_cols=94 Identities=16% Similarity=-0.020 Sum_probs=69.7
Q ss_pred ccccHhH---HHHhhhCC----------CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHH-hhhc
Q 019408 2 CGCGIRS---LRYLAEAK----------ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSE-CYLK 67 (341)
Q Consensus 2 agsG~rg---ir~a~e~g----------a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~-~~~~ 67 (341)
||+|+++ ++++++.| +.+|+++|.|+.|+..+++... |+.. ++++++++|+.++--- ....
T Consensus 418 aGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~----d~VtVI~gd~eev~lp~~~~~ 492 (745)
T 3ua3_A 418 GGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWK----RRVTIIESDMRSLPGIAKDRG 492 (745)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTT----TCSEEEESCGGGHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCC----CeEEEEeCchhhcccccccCC
Confidence 7999996 55554333 3499999999999987777665 8885 6799999999887320 0112
Q ss_pred CCcccEEEeCCCCCC------HHHHHHHHHhcccCCEEE
Q 019408 68 REFFDLIDIDSFGSD------SSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 68 ~~~fDvIdlDPygsp------~~fld~al~~v~~gGlL~ 100 (341)
.++.|+|+-...|+- .+.++.+-+.|++||+++
T Consensus 493 ~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 493 FEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp CCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred CCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 468999999986642 146677778899999987
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00025 Score=66.20 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=70.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCC--CCccEEEEeccHHHHHH--HhhhcCCcccEEEeC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSG--DEKRWVVTHFDANRVLS--ECYLKREFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~--~~~~~~v~~~DA~~~l~--~~~~~~~~fDvIdlD 77 (341)
||+|..+..++. .+..+|+++|+|+.+++.+++++..++.... ...+++++++|+..+.. ........||+|+..
T Consensus 43 cG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~ 121 (313)
T 3bgv_A 43 CGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQ 121 (313)
T ss_dssp CTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEE
T ss_pred CCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCCEEEEEEe
Confidence 789999998887 5677899999999999999999886521000 01357889999876420 010113479999865
Q ss_pred C-C----CC---CHHHHHHHHHhcccCCEEEEEe
Q 019408 78 S-F----GS---DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 78 P-y----gs---p~~fld~al~~v~~gGlL~vt~ 103 (341)
- + .+ +..++..+.+.|++||+++++.
T Consensus 122 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (313)
T 3bgv_A 122 FVCHYSFESYEQADMMLRNACERLSPGGYFIGTT 155 (313)
T ss_dssp TCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cchhhccCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 3 2 11 1356777788999999999854
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.28 E-value=7.4e-05 Score=79.04 Aligned_cols=99 Identities=15% Similarity=0.045 Sum_probs=69.6
Q ss_pred CccccHhHHHHhhhCC---CCEEEEeeCCHHHHHHH--HHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEE
Q 019408 1 MCGCGIRSLRYLAEAK---ADFVMANDGNDAHRRVI--LGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLID 75 (341)
Q Consensus 1 fagsG~rgir~a~e~g---a~~V~~~Dis~~A~~~i--~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvId 75 (341)
+||||.+.+.++...+ ..+++++|+++.+++++ +.|+..|.+.-+. ....+...|.... ......+||+|+
T Consensus 329 aCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi-~~~~I~~dD~L~~---~~~~~~kFDVVI 404 (878)
T 3s1s_A 329 AAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSN-NAPTITGEDVCSL---NPEDFANVSVVV 404 (878)
T ss_dssp TCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTT-BCCEEECCCGGGC---CGGGGTTEEEEE
T ss_pred CCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCC-CcceEEecchhcc---cccccCCCCEEE
Confidence 5899999999987533 24699999999999999 8888875542000 1224556665432 011235799999
Q ss_pred eCC-CCCC--------------------------------HHHHHHHHHhcccCCEEEEEe
Q 019408 76 IDS-FGSD--------------------------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 76 lDP-ygsp--------------------------------~~fld~al~~v~~gGlL~vt~ 103 (341)
.+| |+.. ..|+..+++.|++||.+++-.
T Consensus 405 gNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIl 465 (878)
T 3s1s_A 405 MNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIM 465 (878)
T ss_dssp ECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEE
Confidence 999 8531 136778999999999999744
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00019 Score=59.70 Aligned_cols=85 Identities=12% Similarity=-0.020 Sum_probs=60.7
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHH-----HHhhhcCCcccEEE
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVL-----SECYLKREFFDLID 75 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l-----~~~~~~~~~fDvId 75 (341)
||+|..++.++...|. .+|+++|+|+ ..+. .++++.+.|+.+.- ... .....||+|+
T Consensus 31 ~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------------~~~~~~~~d~~~~~~~~~~~~~-~~~~~~D~i~ 93 (180)
T 1ej0_A 31 AAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------------VGVDFLQGDFRDELVMKALLER-VGDSKVQVVM 93 (180)
T ss_dssp CTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------------TTEEEEESCTTSHHHHHHHHHH-HTTCCEEEEE
T ss_pred CCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------------CcEEEEEcccccchhhhhhhcc-CCCCceeEEE
Confidence 7999999998875344 6899999999 5432 14567788886542 111 2235799999
Q ss_pred eCC-CC---CC-----------HHHHHHHHHhcccCCEEEEEe
Q 019408 76 IDS-FG---SD-----------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 76 lDP-yg---sp-----------~~fld~al~~v~~gGlL~vt~ 103 (341)
.|+ +. .+ ..++..+.+.+++||.+.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (180)
T 1ej0_A 94 SDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 997 32 22 467788889999999999854
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0005 Score=65.61 Aligned_cols=92 Identities=14% Similarity=0.030 Sum_probs=70.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++..+......+++.+|+ +.+++.+++|++.+++. +++++.++|+++.+ +..||+|++..
T Consensus 191 ~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~------~~~~D~v~~~~vl~ 259 (374)
T 1qzz_A 191 GGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA----DRVTVAEGDFFKPL------PVTADVVLLSFVLL 259 (374)
T ss_dssp CTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT----TTEEEEECCTTSCC------SCCEEEEEEESCGG
T ss_pred CCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCC----CceEEEeCCCCCcC------CCCCCEEEEecccc
Confidence 799999999987532357999999 99999999999988774 47889999986421 22499998865
Q ss_pred -CCCC--HHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGSD--SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp--~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+ ..++..+.+.|++||.|.+...
T Consensus 260 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 260 NWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 2212 2567788899999998887553
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00015 Score=65.11 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=65.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHH----HHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHR----RVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~----~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD 77 (341)
||+|..++..+......+|+.+|+|+.++ +.+++|++..++. ++++.++|+..+-.. ....+|.|.+.
T Consensus 33 CG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-----~v~~~~~d~~~l~~~---~~d~v~~i~~~ 104 (225)
T 3p2e_A 33 TGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-----NVVFVIAAAESLPFE---LKNIADSISIL 104 (225)
T ss_dssp CTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-----SEEEECCBTTBCCGG---GTTCEEEEEEE
T ss_pred ccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-----CeEEEEcCHHHhhhh---ccCeEEEEEEe
Confidence 79999999998643345799999996555 5558888877763 578899998765110 11345555554
Q ss_pred C-CCC--------CHHHHHHHHHhcccCCEEEEEe
Q 019408 78 S-FGS--------DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 78 P-ygs--------p~~fld~al~~v~~gGlL~vt~ 103 (341)
+ +.+ +..++...-+.|++||.+.+..
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 105 FPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp SCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 3 211 2356777788999999999833
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00015 Score=63.73 Aligned_cols=92 Identities=13% Similarity=0.137 Sum_probs=65.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHH----HcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLK----SIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~----~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD 77 (341)
||+|..++.++......+|+++|+|+.+++.+.++++ ..++ .++++.++|+.++- ..... |.|++.
T Consensus 36 cG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~l~----~~~~~-d~v~~~ 105 (218)
T 3mq2_A 36 TGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-----PNLLYLWATAERLP----PLSGV-GELHVL 105 (218)
T ss_dssp CTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-----TTEEEEECCSTTCC----SCCCE-EEEEEE
T ss_pred CCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-----CceEEEecchhhCC----CCCCC-CEEEEE
Confidence 7999999999885325689999999998876555443 3444 36788999987631 11223 777654
Q ss_pred C-CCC--------CHHHHHHHHHhcccCCEEEEEe
Q 019408 78 S-FGS--------DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 78 P-ygs--------p~~fld~al~~v~~gGlL~vt~ 103 (341)
. +.. +..++..+.+.|++||.|+++.
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 106 MPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp SCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred ccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence 4 221 2477888899999999999854
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00072 Score=63.29 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=70.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe-CCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI-DSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl-DPyg 80 (341)
||+|..++..+......+++++|+| .+++.+++|++.+++. +++++..+|+.+. . . ...||+|++ +.+.
T Consensus 174 ~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~--~--~-~~~~D~v~~~~~l~ 243 (335)
T 2r3s_A 174 ASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVA----SRYHTIAGSAFEV--D--Y-GNDYDLVLLPNFLH 243 (335)
T ss_dssp CTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCG----GGEEEEESCTTTS--C--C-CSCEEEEEEESCGG
T ss_pred CCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCC----cceEEEecccccC--C--C-CCCCcEEEEcchhc
Confidence 7899999999875333589999999 9999999999988773 4688999998753 1 1 234999988 4421
Q ss_pred -C--C--HHHHHHHHHhcccCCEEEEEec
Q 019408 81 -S--D--SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 -s--p--~~fld~al~~v~~gGlL~vt~T 104 (341)
. + ..++..+.+.+++||.|.+...
T Consensus 244 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 272 (335)
T 2r3s_A 244 HFDVATCEQLLRKIKTALAVEGKVIVFDF 272 (335)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHhCCCCcEEEEEee
Confidence 1 1 3567788889999998887554
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00047 Score=64.14 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=61.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|+|..+...+. .+ .+|+++|+|+..++.+++|++.++.. .+++++++|+.++ . -..||+|+.++ |.
T Consensus 37 ~G~G~lt~~L~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~~----~~v~~~~~D~~~~----~--~~~fD~vv~nlpy~ 104 (285)
T 1zq9_A 37 PGTGNMTVKLLE-KA-KKVVACELDPRLVAELHKRVQGTPVA----SKLQVLVGDVLKT----D--LPFFDTCVANLPYQ 104 (285)
T ss_dssp CTTSTTHHHHHH-HS-SEEEEEESCHHHHHHHHHHHTTSTTG----GGEEEEESCTTTS----C--CCCCSEEEEECCGG
T ss_pred CcccHHHHHHHh-hC-CEEEEEECCHHHHHHHHHHHHhcCCC----CceEEEEcceecc----c--chhhcEEEEecCcc
Confidence 799999999987 45 48999999999999999999866552 4688999999753 1 12699999997 66
Q ss_pred CCHHHHHHHHHh
Q 019408 81 SDSSFLRTVFNA 92 (341)
Q Consensus 81 sp~~fld~al~~ 92 (341)
..++.+...+..
T Consensus 105 ~~~~~~~~~l~~ 116 (285)
T 1zq9_A 105 ISSPFVFKLLLH 116 (285)
T ss_dssp GHHHHHHHHHHC
T ss_pred cchHHHHHHHhc
Confidence 555666555543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00012 Score=64.82 Aligned_cols=84 Identities=12% Similarity=0.102 Sum_probs=63.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEE-e-CCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLID-I-DSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvId-l-DPy 79 (341)
||+|..++.++.. +. +|+++|+|+.+++.+++++. ++++.++|+..+. . ...||+|+ . +.+
T Consensus 49 ~G~G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~~~~----------~~~~~~~d~~~~~----~-~~~~D~v~~~~~~~ 111 (239)
T 3bxo_A 49 CGTGTHLEHFTKE-FG-DTAGLELSEDMLTHARKRLP----------DATLHQGDMRDFR----L-GRKFSAVVSMFSSV 111 (239)
T ss_dssp CTTSHHHHHHHHH-HS-EEEEEESCHHHHHHHHHHCT----------TCEEEECCTTTCC----C-SSCEEEEEECTTGG
T ss_pred ccCCHHHHHHHHh-CC-cEEEEeCCHHHHHHHHHhCC----------CCEEEECCHHHcc----c-CCCCcEEEEcCchH
Confidence 7999999988874 54 89999999999999998742 3467788886531 1 45799998 3 232
Q ss_pred --C-C---CHHHHHHHHHhcccCCEEEEE
Q 019408 80 --G-S---DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 --g-s---p~~fld~al~~v~~gGlL~vt 102 (341)
- . ...++..+.+.|++||.|.++
T Consensus 112 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 112 GYLKTTEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp GGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 1 1 135677888999999999984
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00021 Score=64.69 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=61.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||||..+..++. .|+.+|+++|+|+.+++..++|...... .-..++. .+.........||.+..|. |.
T Consensus 46 cGtG~~t~~la~-~g~~~V~gvDis~~ml~~a~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~d~~~~D~v~~ 114 (232)
T 3opn_A 46 SSTGGFTDVMLQ-NGAKLVYALDVGTNQLAWKIRSDERVVV---------MEQFNFR-NAVLADFEQGRPSFTSIDVSFI 114 (232)
T ss_dssp CTTSHHHHHHHH-TTCSEEEEECSSCCCCCHHHHTCTTEEE---------ECSCCGG-GCCGGGCCSCCCSEEEECCSSS
T ss_pred cCCCHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHhCccccc---------cccceEE-EeCHhHcCcCCCCEEEEEEEhh
Confidence 799999999988 5888999999999999987765432211 0011111 1110001112368777887 66
Q ss_pred CCHHHHHHHHHhcccCCEEEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt 102 (341)
+...++..+.+.|++||.+.+.
T Consensus 115 ~l~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 115 SLDLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp CGGGTHHHHHHHSCTTCEEEEE
T ss_pred hHHHHHHHHHHhccCCCEEEEE
Confidence 6668889999999999999984
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00056 Score=64.99 Aligned_cols=92 Identities=15% Similarity=0.006 Sum_probs=70.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..++..+......+++.+|+ +.+++.+++|++.+++. +++++..+|+++.+ +..||+|++.. +
T Consensus 192 ~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~------~~~~D~v~~~~vl~ 260 (360)
T 1tw3_A 192 GGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS----DRVDVVEGDFFEPL------PRKADAIILSFVLL 260 (360)
T ss_dssp CTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT----TTEEEEECCTTSCC------SSCEEEEEEESCGG
T ss_pred CcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCC----CceEEEeCCCCCCC------CCCccEEEEccccc
Confidence 799999999988532357899999 99999999999988874 47889999986421 23499988755 2
Q ss_pred --CCC--HHHHHHHHHhcccCCEEEEEec
Q 019408 80 --GSD--SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 --gsp--~~fld~al~~v~~gGlL~vt~T 104 (341)
..+ ..++..+.+.|++||.|.+...
T Consensus 261 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 289 (360)
T 1tw3_A 261 NWPDHDAVRILTRCAEALEPGGRILIHER 289 (360)
T ss_dssp GSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 211 2577888899999999987553
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0011 Score=62.45 Aligned_cols=89 Identities=16% Similarity=0.050 Sum_probs=61.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEE-EeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVV-THFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v-~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||||.++..++. .|+.+|+++|+|+..++...++-. ++.. ...|+..+-.+ ......||+|..|- |
T Consensus 94 cGTG~~t~~L~~-~ga~~V~aVDvs~~mL~~a~r~~~----------rv~~~~~~ni~~l~~~-~l~~~~fD~v~~d~sf 161 (291)
T 3hp7_A 94 ASTGGFTDVMLQ-NGAKLVYAVDVGTNQLVWKLRQDD----------RVRSMEQYNFRYAEPV-DFTEGLPSFASIDVSF 161 (291)
T ss_dssp CTTSHHHHHHHH-TTCSEEEEECSSSSCSCHHHHTCT----------TEEEECSCCGGGCCGG-GCTTCCCSEEEECCSS
T ss_pred CCccHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhCc----------ccceecccCceecchh-hCCCCCCCEEEEEeeH
Confidence 799999988877 699999999999988877333211 1111 12232211111 11123499999998 7
Q ss_pred CCCHHHHHHHHHhcccCCEEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt 102 (341)
-+....+....+.|++||.|.+.
T Consensus 162 ~sl~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 162 ISLNLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp SCGGGTHHHHHHHSCTTCEEEEE
T ss_pred hhHHHHHHHHHHHcCcCCEEEEE
Confidence 77777888899999999999874
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00037 Score=67.74 Aligned_cols=67 Identities=21% Similarity=0.055 Sum_probs=51.3
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHh----hhcCCcccEEEe
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSEC----YLKREFFDLIDI 76 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~----~~~~~~fDvIdl 76 (341)
|||+|.+++-+.. +|.+.|+++|+++.|+++.+.|.. ...++++|+.++..+. ......+|+|..
T Consensus 9 FsG~GGlslG~~~-aG~~~v~avE~d~~a~~t~~~N~~----------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~g 77 (376)
T 3g7u_A 9 FSGVGGLSLGAAR-AGFDVKMAVEIDQHAINTHAINFP----------RSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIG 77 (376)
T ss_dssp TCTTSHHHHHHHH-HTCEEEEEECSCHHHHHHHHHHCT----------TSEEECCCGGGCCHHHHHHHHCSCCCCCEEEE
T ss_pred ccCcCHHHHHHHH-CCCcEEEEEeCCHHHHHHHHHhCC----------CCceEecChhhcCHHHHHhhcccCCCeeEEEe
Confidence 8999999999877 699999999999999999999864 1235566766543221 112357999999
Q ss_pred CC
Q 019408 77 DS 78 (341)
Q Consensus 77 DP 78 (341)
+|
T Consensus 78 gp 79 (376)
T 3g7u_A 78 GP 79 (376)
T ss_dssp CC
T ss_pred cC
Confidence 99
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0011 Score=59.87 Aligned_cols=85 Identities=18% Similarity=0.105 Sum_probs=64.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++. .|. +|+++|+|+.+++.++++.. . . +.++|+..+ ......||+|+...
T Consensus 63 cG~G~~~~~l~~-~~~-~v~gvD~s~~~l~~a~~~~~----~-----~--~~~~d~~~~----~~~~~~fD~v~~~~~~~ 125 (260)
T 2avn_A 63 GGTGKWSLFLQE-RGF-EVVLVDPSKEMLEVAREKGV----K-----N--VVEAKAEDL----PFPSGAFEAVLALGDVL 125 (260)
T ss_dssp CTTCHHHHHHHT-TTC-EEEEEESCHHHHHHHHHHTC----S-----C--EEECCTTSC----CSCTTCEEEEEECSSHH
T ss_pred CCcCHHHHHHHH-cCC-eEEEEeCCHHHHHHHHhhcC----C-----C--EEECcHHHC----CCCCCCEEEEEEcchhh
Confidence 799999998887 464 79999999999999998754 1 1 456776542 12245799998853
Q ss_pred -C-CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -F-GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -y-gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+ ..+..++..+.+.|++||.|.++.
T Consensus 126 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 152 (260)
T 2avn_A 126 SYVENKDKAFSEIRRVLVPDGLLIATV 152 (260)
T ss_dssp HHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccccHHHHHHHHHHHcCCCeEEEEEe
Confidence 2 335677888889999999999854
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0063 Score=64.81 Aligned_cols=91 Identities=14% Similarity=0.053 Sum_probs=67.6
Q ss_pred ccccHhHHHHhhhCCC--CEEEEeeCCHHHHHHHHHHHHHc------CCCCCCCccEEEEeccHHHHHHHhhhcCCcccE
Q 019408 2 CGCGIRSLRYLAEAKA--DFVMANDGNDAHRRVILGNLKSI------ERGSGDEKRWVVTHFDANRVLSECYLKREFFDL 73 (341)
Q Consensus 2 agsG~rgir~a~e~ga--~~V~~~Dis~~A~~~i~~N~~~n------~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDv 73 (341)
||+|..++.++. .+. .+|+++|+|+.+++.++++++.. ++ .++++.++|+.++- .....||+
T Consensus 730 CGTG~lai~LAr-~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-----~nVefiqGDa~dLp----~~d~sFDl 799 (950)
T 3htx_A 730 CGSGSLLDSLLD-YPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-----KSATLYDGSILEFD----SRLHDVDI 799 (950)
T ss_dssp CSSSHHHHHHTS-SCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-----SEEEEEESCTTSCC----TTSCSCCE
T ss_pred CCCCHHHHHHHH-hCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-----CceEEEECchHhCC----cccCCeeE
Confidence 799999999987 453 68999999999999999987643 33 36889999987642 23457999
Q ss_pred EEeCC-C---CCCH--HHHHHHHHhcccCCEEEEEe
Q 019408 74 IDIDS-F---GSDS--SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 74 IdlDP-y---gsp~--~fld~al~~v~~gGlL~vt~ 103 (341)
|+.-- + ..+. .++..+.+.|++| +|+++.
T Consensus 800 VV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 800 GTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 98754 2 1121 3677888999998 766643
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00047 Score=60.18 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=63.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..+..++.. | .+|+++|+|+.+++.+++|+. ++.+.|+..+. .......||+|+..-
T Consensus 41 ~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~~------------~~~~~d~~~~~--~~~~~~~fD~v~~~~~l~ 104 (230)
T 3cc8_A 41 CSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKLD------------HVVLGDIETMD--MPYEEEQFDCVIFGDVLE 104 (230)
T ss_dssp CTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTSS------------EEEESCTTTCC--CCSCTTCEEEEEEESCGG
T ss_pred CCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhCC------------cEEEcchhhcC--CCCCCCccCEEEECChhh
Confidence 7899999988874 6 789999999999998887542 34567765421 111235799998753
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+..++..+.+.|++||.|.++..
T Consensus 105 ~~~~~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 105 HLFDPWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp GSSCHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 22345778888899999999998543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0007 Score=61.34 Aligned_cols=85 Identities=12% Similarity=0.074 Sum_probs=63.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|+|..+..++...+..+|+++|+|+.+++.++++.. ++.+...|+..+ ......||+|+.-.
T Consensus 94 ~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----------~~~~~~~d~~~~----~~~~~~fD~v~~~~--- 156 (269)
T 1p91_A 94 CGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP----------QVTFCVASSHRL----PFSDTSMDAIIRIY--- 156 (269)
T ss_dssp CTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT----------TSEEEECCTTSC----SBCTTCEEEEEEES---
T ss_pred CCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC----------CcEEEEcchhhC----CCCCCceeEEEEeC---
Confidence 6899999998874323579999999999999988642 345677787542 12235799888632
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
...++..+.+.|++||.|.+..
T Consensus 157 ~~~~l~~~~~~L~pgG~l~~~~ 178 (269)
T 1p91_A 157 APCKAEELARVVKPGGWVITAT 178 (269)
T ss_dssp CCCCHHHHHHHEEEEEEEEEEE
T ss_pred ChhhHHHHHHhcCCCcEEEEEE
Confidence 1256888899999999999854
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0011 Score=60.46 Aligned_cols=86 Identities=14% Similarity=0.148 Sum_probs=65.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..++.++. .+ .+|+++|+|+..++.+++++ . ++++..+|+..+- . ...||+|+... +
T Consensus 66 cG~G~~~~~l~~-~~-~~v~gvD~s~~~~~~a~~~~--~--------~~~~~~~d~~~~~----~-~~~fD~v~~~~~l~ 128 (279)
T 3ccf_A 66 CGTGQLTEKIAQ-SG-AEVLGTDNAATMIEKARQNY--P--------HLHFDVADARNFR----V-DKPLDAVFSNAMLH 128 (279)
T ss_dssp CTTSHHHHHHHH-TT-CEEEEEESCHHHHHHHHHHC--T--------TSCEEECCTTTCC----C-SSCEEEEEEESCGG
T ss_pred CCCCHHHHHHHh-CC-CeEEEEECCHHHHHHHHhhC--C--------CCEEEECChhhCC----c-CCCcCEEEEcchhh
Confidence 799999998887 55 47999999999999999876 1 2346778876531 1 35799998765 2
Q ss_pred --CCCHHHHHHHHHhcccCCEEEEEec
Q 019408 80 --GSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 --gsp~~fld~al~~v~~gGlL~vt~T 104 (341)
..+..++..+.+.|++||.|.++..
T Consensus 129 ~~~d~~~~l~~~~~~LkpgG~l~~~~~ 155 (279)
T 3ccf_A 129 WVKEPEAAIASIHQALKSGGRFVAEFG 155 (279)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCcCHHHHHHHHHHhcCCCcEEEEEec
Confidence 3355788889999999999998543
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.002 Score=59.37 Aligned_cols=101 Identities=13% Similarity=0.038 Sum_probs=65.6
Q ss_pred ccccHhHHHHhhhC------CC------CEEEEeeCCH---HH-----------HHHHHHHHHHc----------CCCCC
Q 019408 2 CGCGIRSLRYLAEA------KA------DFVMANDGND---AH-----------RRVILGNLKSI----------ERGSG 45 (341)
Q Consensus 2 agsG~rgir~a~e~------ga------~~V~~~Dis~---~A-----------~~~i~~N~~~n----------~~~~~ 45 (341)
.|||.-.+-.+... +. .+++.+|..| +- .++.+++++.- .++.
T Consensus 69 fGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~~r~~~~~- 147 (257)
T 2qy6_A 69 FGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDE- 147 (257)
T ss_dssp CTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEEEEEEEC--
T ss_pred CChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccchhheeccC-
Confidence 47887776654321 21 4789999887 22 23556665530 1110
Q ss_pred CCccEEEEeccHHHHHHHhhhc-CCcccEEEeCCCCC-------CHHHHHHHHHhcccCCEEEEEec
Q 019408 46 DEKRWVVTHFDANRVLSECYLK-REFFDLIDIDSFGS-------DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 46 ~~~~~~v~~~DA~~~l~~~~~~-~~~fDvIdlDPygs-------p~~fld~al~~v~~gGlL~vt~T 104 (341)
...+++++.+||.+.|...... ...||+|++|||.. ...+++...+.+++||.|.+ .|
T Consensus 148 ~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t-ys 213 (257)
T 2qy6_A 148 GRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT-FT 213 (257)
T ss_dssp -CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE-SC
T ss_pred CceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE-Ee
Confidence 0135779999999988764211 12699999999863 23688899999999999984 44
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0039 Score=57.26 Aligned_cols=93 Identities=18% Similarity=0.073 Sum_probs=64.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC---C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---S 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---P 78 (341)
||+|.+++.++ +..++++.|||+.+++.+++|+..++. ...+...|.... ..+..||+|.+= |
T Consensus 114 CG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~------~~~~~v~D~~~~-----~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 114 CGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDW------DFTFALQDVLCA-----PPAEAGDLALIFKLLP 179 (253)
T ss_dssp CTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTC------EEEEEECCTTTS-----CCCCBCSEEEEESCHH
T ss_pred CCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCC------CceEEEeecccC-----CCCCCcchHHHHHHHH
Confidence 68899998887 667899999999999999999999886 456777786532 224589999554 2
Q ss_pred ----CCCCHHHHHHHHHhcccCCEEEEEecCCCCCCCC
Q 019408 79 ----FGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGH 112 (341)
Q Consensus 79 ----ygsp~~fld~al~~v~~gGlL~vt~TD~~~l~g~ 112 (341)
-...+- ...++.|+.+|++. +=++..|.|.
T Consensus 180 ~LE~q~~~~~--~~ll~aL~~~~vvV--sfPtksl~Gr 213 (253)
T 3frh_A 180 LLEREQAGSA--MALLQSLNTPRMAV--SFPTRSLGGR 213 (253)
T ss_dssp HHHHHSTTHH--HHHHHHCBCSEEEE--EEECC-----
T ss_pred HhhhhchhhH--HHHHHHhcCCCEEE--EcChHHhcCC
Confidence 122222 27788899987776 3345556654
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00031 Score=67.31 Aligned_cols=66 Identities=21% Similarity=0.126 Sum_probs=50.0
Q ss_pred CccccHhHHHHhhhCC--CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAK--ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~g--a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
|||+|.+++-+.+ +| ++.|+++|+++.|+++.+.|.... .++++|+.++...... ...+|+|..+|
T Consensus 9 FaG~Gg~~~g~~~-~G~~~~~v~~~E~d~~a~~~~~~N~~~~----------~~~~~Di~~~~~~~~~-~~~~D~l~~gp 76 (343)
T 1g55_A 9 YSGVGGMHHALRE-SCIPAQVVAAIDVNTVANEVYKYNFPHT----------QLLAKTIEGITLEEFD-RLSFDMILMSP 76 (343)
T ss_dssp TCTTCHHHHHHHH-HTCSEEEEEEECCCHHHHHHHHHHCTTS----------CEECSCGGGCCHHHHH-HHCCSEEEECC
T ss_pred CcCccHHHHHHHH-CCCCceEEEEEeCCHHHHHHHHHhcccc----------ccccCCHHHccHhHcC-cCCcCEEEEcC
Confidence 8999999999887 68 568999999999999999997521 2456776665422111 12599999999
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0016 Score=55.73 Aligned_cols=85 Identities=16% Similarity=0.066 Sum_probs=57.6
Q ss_pred ccccHhHHHHhhhCCC---------CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEE-eccHHHHH-----HHhhh
Q 019408 2 CGCGIRSLRYLAEAKA---------DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVT-HFDANRVL-----SECYL 66 (341)
Q Consensus 2 agsG~rgir~a~e~ga---------~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~-~~DA~~~l-----~~~~~ 66 (341)
||+|..++..+...|. .+|+++|+|+.+ .+ ..++++ ++|+...- ... .
T Consensus 31 cG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-----~~~~~~~~~d~~~~~~~~~~~~~-~ 93 (196)
T 2nyu_A 31 AAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-----EGATFLCPADVTDPRTSQRILEV-L 93 (196)
T ss_dssp CCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-----TTCEEECSCCTTSHHHHHHHHHH-S
T ss_pred CCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-----CCCeEEEeccCCCHHHHHHHHHh-c
Confidence 7999999999886454 689999999832 12 234566 77754321 111 1
Q ss_pred cCCcccEEEeCC-CC---CC-----------HHHHHHHHHhcccCCEEEEEe
Q 019408 67 KREFFDLIDIDS-FG---SD-----------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 67 ~~~~fDvIdlDP-yg---sp-----------~~fld~al~~v~~gGlL~vt~ 103 (341)
.++.||+|+.|+ +. .. ..++..+.+.|++||.|+++.
T Consensus 94 ~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 94 PGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT 145 (196)
T ss_dssp GGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 234799999986 21 11 245667889999999999853
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00073 Score=63.49 Aligned_cols=92 Identities=17% Similarity=0.122 Sum_probs=70.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
+|+|..++..+......+++++|+ +.+++.+++|++..++. +++++..+|+++- .+..||+|++--
T Consensus 176 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~------~~~~~D~v~~~~vl~ 244 (334)
T 2ip2_A 176 GGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAG----ERVSLVGGDMLQE------VPSNGDIYLLSRIIG 244 (334)
T ss_dssp CTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHT----TSEEEEESCTTTC------CCSSCSEEEEESCGG
T ss_pred CCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCC----CcEEEecCCCCCC------CCCCCCEEEEchhcc
Confidence 799999999987533358999999 99999999999877653 4688899998751 124699998754
Q ss_pred -CCCCH--HHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGSDS--SFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp~--~fld~al~~v~~gGlL~vt~T 104 (341)
+..+. .++..+.+++++||.|.+...
T Consensus 245 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 245 DLDEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp GCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 22122 567788889999999998643
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0032 Score=59.13 Aligned_cols=92 Identities=12% Similarity=-0.047 Sum_probs=70.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++..+......+++.+|+ +..++..++++...++. +++++..+|++.- . +..||+|++=-
T Consensus 178 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~-----~-p~~~D~v~~~~vlh 246 (332)
T 3i53_A 178 GGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLS----GRAQVVVGSFFDP-----L-PAGAGGYVLSAVLH 246 (332)
T ss_dssp CTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT----TTEEEEECCTTSC-----C-CCSCSEEEEESCGG
T ss_pred CChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcC----cCeEEecCCCCCC-----C-CCCCcEEEEehhhc
Confidence 699999999987633457999999 99999999999987764 5788999998621 1 22799998743
Q ss_pred -CCCC--HHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGSD--SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp--~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+ ..++..+.++|++||.|.+...
T Consensus 247 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 247 DWDDLSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 1111 3567788889999999998654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0014 Score=62.02 Aligned_cols=95 Identities=13% Similarity=0.075 Sum_probs=71.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
+|+|..++..+......+++.+|+ +..++.++++++..++. +++++..+|+++... .....||+|++-- +
T Consensus 188 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~---~~~~~~D~v~~~~vlh 259 (352)
T 3mcz_A 188 GGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLG----GRVEFFEKNLLDARN---FEGGAADVVMLNDCLH 259 (352)
T ss_dssp CTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCG----GGEEEEECCTTCGGG---GTTCCEEEEEEESCGG
T ss_pred CCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCC----CceEEEeCCcccCcc---cCCCCccEEEEecccc
Confidence 699999999988533467999999 88999999999988774 578999999875321 0234699998743 1
Q ss_pred --CCC--HHHHHHHHHhcccCCEEEEEec
Q 019408 80 --GSD--SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 --gsp--~~fld~al~~v~~gGlL~vt~T 104 (341)
..+ ..++..+.++|++||.|.+...
T Consensus 260 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (352)
T 3mcz_A 260 YFDAREAREVIGHAAGLVKPGGALLILTM 288 (352)
T ss_dssp GSCHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 111 4567788899999999998553
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0021 Score=61.53 Aligned_cols=95 Identities=14% Similarity=0.052 Sum_probs=69.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|+|..++..+......+++.+|+ +..++.+++|++..++. +++++..+|+++.- . .-+..||+|++-- +.
T Consensus 188 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~--~-~~p~~~D~v~~~~vlh 259 (363)
T 3dp7_A 188 GNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGS----ERIHGHGANLLDRD--V-PFPTGFDAVWMSQFLD 259 (363)
T ss_dssp CTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTG----GGEEEEECCCCSSS--C-CCCCCCSEEEEESCST
T ss_pred CCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcc----cceEEEEccccccC--C-CCCCCcCEEEEechhh
Confidence 699999999988633347999999 99999999999877663 57889999986420 0 0124799998733 11
Q ss_pred -CC----HHHHHHHHHhcccCCEEEEEec
Q 019408 81 -SD----SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 -sp----~~fld~al~~v~~gGlL~vt~T 104 (341)
.+ ..++..+.++|++||.|.+...
T Consensus 260 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 260 CFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp TSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 12 2457778889999999988553
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0027 Score=60.34 Aligned_cols=92 Identities=13% Similarity=0.026 Sum_probs=70.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
+|+|..++..+......+++.+|+ +.+++.+++|++.+++. +++++..+|+++.- -..+|+|++-- +
T Consensus 199 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~------~~~~D~v~~~~vlh 267 (359)
T 1x19_A 199 GGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA----DRMRGIAVDIYKES------YPEADAVLFCRILY 267 (359)
T ss_dssp CTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCT----TTEEEEECCTTTSC------CCCCSEEEEESCGG
T ss_pred CcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCC----CCEEEEeCccccCC------CCCCCEEEEechhc
Confidence 799999999988532357999999 99999999999988774 46889999987531 12359987754 2
Q ss_pred --CC--CHHHHHHHHHhcccCCEEEEEec
Q 019408 80 --GS--DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 --gs--p~~fld~al~~v~~gGlL~vt~T 104 (341)
.. +..++..+.+.|++||.|.+...
T Consensus 268 ~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 268 SANEQLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp GSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 11 24567788889999999987554
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0056 Score=58.61 Aligned_cols=92 Identities=16% Similarity=0.043 Sum_probs=70.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
+|+|..++..+......+++.+|+ +..++.+++++...++. +++++..+|.+.- . +..||+|++--
T Consensus 211 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~----~~v~~~~~d~~~~-----~-p~~~D~v~~~~vlh 279 (369)
T 3gwz_A 211 GGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLA----DRCEILPGDFFET-----I-PDGADVYLIKHVLH 279 (369)
T ss_dssp CTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT----TTEEEEECCTTTC-----C-CSSCSEEEEESCGG
T ss_pred CCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcC----CceEEeccCCCCC-----C-CCCceEEEhhhhhc
Confidence 699999999988533357999999 99999999999988764 5788999998721 1 23799998744
Q ss_pred -CCCC--HHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGSD--SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp--~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+ ..++..+.++|++||.|.+...
T Consensus 280 ~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 308 (369)
T 3gwz_A 280 DWDDDDVVRILRRIATAMKPDSRLLVIDN 308 (369)
T ss_dssp GSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 1111 1467788889999999998543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00097 Score=58.24 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=55.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHH-----HHHhhh--cCCcccEE
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV-----LSECYL--KREFFDLI 74 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~-----l~~~~~--~~~~fDvI 74 (341)
||+|..++.++. . ..+|+++|+++.+ .. ..++++++|+.+. +..... ...+||+|
T Consensus 34 ~G~G~~s~~la~-~-~~~V~gvD~~~~~-----------~~-----~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~V 95 (191)
T 3dou_A 34 SSPGGWTQVLNS-L-ARKIISIDLQEME-----------EI-----AGVRFIRCDIFKETIFDDIDRALREEGIEKVDDV 95 (191)
T ss_dssp CTTCHHHHHHTT-T-CSEEEEEESSCCC-----------CC-----TTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEE
T ss_pred ecCCHHHHHHHH-c-CCcEEEEeccccc-----------cC-----CCeEEEEccccCHHHHHHHHHHhhcccCCcceEE
Confidence 799999999887 4 5689999999742 12 2456788887542 111111 01389999
Q ss_pred EeCCC--CCCH-------------HHHHHHHHhcccCCEEEEEe
Q 019408 75 DIDSF--GSDS-------------SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 75 dlDPy--gsp~-------------~fld~al~~v~~gGlL~vt~ 103 (341)
..|+. .+.. ..++.|.+.|++||.|.+.-
T Consensus 96 lsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~ 139 (191)
T 3dou_A 96 VSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ 139 (191)
T ss_dssp EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 99972 2211 23446678999999999743
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0012 Score=60.58 Aligned_cols=85 Identities=19% Similarity=0.145 Sum_probs=62.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||||..+...+. .| .+|+++|+|+..++.++++ .++++.++|+.++ ......||+|..-=
T Consensus 48 cGtG~~~~~l~~-~~-~~v~gvD~s~~ml~~a~~~-----------~~v~~~~~~~e~~----~~~~~sfD~v~~~~~~h 110 (257)
T 4hg2_A 48 CGSGQASLGLAE-FF-ERVHAVDPGEAQIRQALRH-----------PRVTYAVAPAEDT----GLPPASVDVAIAAQAMH 110 (257)
T ss_dssp CTTTTTHHHHHT-TC-SEEEEEESCHHHHHTCCCC-----------TTEEEEECCTTCC----CCCSSCEEEEEECSCCT
T ss_pred CCCCHHHHHHHH-hC-CEEEEEeCcHHhhhhhhhc-----------CCceeehhhhhhh----cccCCcccEEEEeeehh
Confidence 799999888876 56 5799999999988755421 2567888888643 23456899997643
Q ss_pred CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+-.+..++..+.+.|++||.|++..
T Consensus 111 ~~~~~~~~~e~~rvLkpgG~l~~~~ 135 (257)
T 4hg2_A 111 WFDLDRFWAELRRVARPGAVFAAVT 135 (257)
T ss_dssp TCCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhHHHHHHHHHHHcCCCCEEEEEE
Confidence 2234578888999999999998744
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0012 Score=59.93 Aligned_cols=85 Identities=16% Similarity=0.061 Sum_probs=63.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++. .| .+|+++|+|+..++.++++. ++++.++|+.++ ....+.||+|+.--
T Consensus 43 cG~G~~~~~l~~-~~-~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~d~~~~----~~~~~~fD~v~~~~~l~ 105 (261)
T 3ege_A 43 AGTGGYSVALAN-QG-LFVYAVEPSIVMRQQAVVHP-----------QVEWFTGYAENL----ALPDKSVDGVISILAIH 105 (261)
T ss_dssp CTTSHHHHHHHT-TT-CEEEEECSCHHHHHSSCCCT-----------TEEEECCCTTSC----CSCTTCBSEEEEESCGG
T ss_pred CcccHHHHHHHh-CC-CEEEEEeCCHHHHHHHHhcc-----------CCEEEECchhhC----CCCCCCEeEEEEcchHh
Confidence 799999999987 56 47999999998888766544 356778888642 12346899998765
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+..++..+.+.|+ ||.+.+...
T Consensus 106 ~~~~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 106 HFSHLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp GCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred hccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence 2345678889999999 996666443
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0023 Score=56.15 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=60.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++..+. . +++|+|+.+++.+++| ++ ++.+.|+..+ ......||+|++.-
T Consensus 56 ~G~G~~~~~l~~-~-----~~vD~s~~~~~~a~~~----~~--------~~~~~d~~~~----~~~~~~fD~v~~~~~l~ 113 (219)
T 1vlm_A 56 VGTGRFAVPLKI-K-----IGVEPSERMAEIARKR----GV--------FVLKGTAENL----PLKDESFDFALMVTTIC 113 (219)
T ss_dssp CTTSTTHHHHTC-C-----EEEESCHHHHHHHHHT----TC--------EEEECBTTBC----CSCTTCEEEEEEESCGG
T ss_pred CCCCHHHHHHHH-H-----hccCCCHHHHHHHHhc----CC--------EEEEcccccC----CCCCCCeeEEEEcchHh
Confidence 789999888765 3 8999999999999987 33 3567776542 12345799998764
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+..++..+.+.|++||.|.++..
T Consensus 114 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 140 (219)
T 1vlm_A 114 FVDDPERALKEAYRILKKGGYLIVGIV 140 (219)
T ss_dssp GSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 23356788888999999999998654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.011 Score=54.49 Aligned_cols=96 Identities=13% Similarity=-0.093 Sum_probs=65.0
Q ss_pred ccc---cHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHH-------hhhcCCcc
Q 019408 2 CGC---GIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSE-------CYLKREFF 71 (341)
Q Consensus 2 ags---G~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~-------~~~~~~~f 71 (341)
||+ |.....++......+|+.+|+|+..++..++++..+ ..++++++|+.+.-.. ....-..|
T Consensus 86 cG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~-------~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~ 158 (274)
T 2qe6_A 86 SGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD-------PNTAVFTADVRDPEYILNHPDVRRMIDFSRP 158 (274)
T ss_dssp CCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC-------TTEEEEECCTTCHHHHHHSHHHHHHCCTTSC
T ss_pred CCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC-------CCeEEEEeeCCCchhhhccchhhccCCCCCC
Confidence 577 877655544222258999999999999999988532 3578899998753110 00111368
Q ss_pred cEEEeCC---CCC---CHHHHHHHHHhcccCCEEEEEec
Q 019408 72 DLIDIDS---FGS---DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 72 DvIdlDP---ygs---p~~fld~al~~v~~gGlL~vt~T 104 (341)
|+|.+-- |-. +...+....+.|++||.|.++..
T Consensus 159 d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 159 AAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp CEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 9887653 211 35678888899999999998543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0056 Score=62.34 Aligned_cols=65 Identities=17% Similarity=0.067 Sum_probs=54.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEE
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLID 75 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvId 75 (341)
||+|+.+...|. .|+ .|+.+|.++.+++.++..++.++. .++++.++|+.++.... ...+||+|.
T Consensus 75 CG~G~~~~~la~-~ga-~V~giD~~~~~i~~a~~~a~~~~~-----~~~~~~~~~~~~~~~~~--~~~~fD~v~ 139 (569)
T 4azs_A 75 CAQGFFSLSLAS-KGA-TIVGIDFQQENINVCRALAEENPD-----FAAEFRVGRIEEVIAAL--EEGEFDLAI 139 (569)
T ss_dssp CTTSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHTSTT-----SEEEEEECCHHHHHHHC--CTTSCSEEE
T ss_pred CCCcHHHHHHHh-CCC-EEEEECCCHHHHHHHHHHHHhcCC-----CceEEEECCHHHHhhhc--cCCCccEEE
Confidence 799999999998 687 599999999999999999987764 26788999999887643 235799883
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0031 Score=61.10 Aligned_cols=89 Identities=15% Similarity=0.046 Sum_probs=62.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEE-EEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWV-VTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~-v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
||+|.....++. .|. +|+.+|+|+..++.++++ ++. .... +...|+..+-. ....||+|+.--
T Consensus 116 cG~G~~~~~l~~-~g~-~v~gvD~s~~~~~~a~~~----~~~----~~~~~~~~~~~~~l~~----~~~~fD~I~~~~vl 181 (416)
T 4e2x_A 116 CNDGIMLRTIQE-AGV-RHLGFEPSSGVAAKAREK----GIR----VRTDFFEKATADDVRR----TEGPANVIYAANTL 181 (416)
T ss_dssp CTTTTTHHHHHH-TTC-EEEEECCCHHHHHHHHTT----TCC----EECSCCSHHHHHHHHH----HHCCEEEEEEESCG
T ss_pred CCCCHHHHHHHH-cCC-cEEEECCCHHHHHHHHHc----CCC----cceeeechhhHhhccc----CCCCEEEEEECChH
Confidence 689998888876 566 899999999999998876 332 1111 22344433321 235899998754
Q ss_pred --CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 --FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 --ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+..++..+.+.|++||+|.++..
T Consensus 182 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 182 CHIPYVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp GGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 23456888999999999999998643
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0032 Score=57.64 Aligned_cols=51 Identities=18% Similarity=0.384 Sum_probs=39.0
Q ss_pred EEEeccHHHHHHHhhhcCCcccEEEeCC-CCCC-----------------HHHHHHHHHhcccCCEEEEEe
Q 019408 51 VVTHFDANRVLSECYLKREFFDLIDIDS-FGSD-----------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 51 ~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygsp-----------------~~fld~al~~v~~gGlL~vt~ 103 (341)
+++++|+.++|..+. .++||+|++|| |+.. ...+..+.+.|+++|.++|..
T Consensus 6 ~l~~gD~~~~l~~l~--~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 6 KIHQMNCFDFLDQVE--NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SEEECCHHHHHHHSC--TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEechHHHHHHhcc--ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 578999999998753 45899999999 8754 122345567899999999854
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0017 Score=61.91 Aligned_cols=62 Identities=18% Similarity=0.091 Sum_probs=49.0
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
|||+|.+++-+.+ +|++.|+++|+++.|+++.+.|.... . ++|+.++.... -..+|+|..+|
T Consensus 18 FaG~Gg~~~g~~~-aG~~~v~~~e~d~~a~~t~~~N~~~~--------~----~~Di~~~~~~~---~~~~D~l~~gp 79 (327)
T 2c7p_A 18 FAGLGGFRLALES-CGAECVYSNEWDKYAQEVYEMNFGEK--------P----EGDITQVNEKT---IPDHDILCAGF 79 (327)
T ss_dssp TCTTTHHHHHHHH-TTCEEEEEECCCHHHHHHHHHHHSCC--------C----BSCGGGSCGGG---SCCCSEEEEEC
T ss_pred CCCcCHHHHHHHH-CCCeEEEEEeCCHHHHHHHHHHcCCC--------C----cCCHHHcCHhh---CCCCCEEEECC
Confidence 8999999999887 79999999999999999999997421 1 56666553321 12589999998
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0037 Score=58.75 Aligned_cols=77 Identities=14% Similarity=0.035 Sum_probs=58.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|+|..+...+.. +.+|+++|+|+..++.+++|++. . .+++++++|+.++- .....||+|+.++ |.
T Consensus 59 ~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~--~-----~~v~vi~gD~l~~~----~~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 59 LGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKEL--Y-----NNIEIIWGDALKVD----LNKLDFNKVVANLPYQ 125 (295)
T ss_dssp CTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHH--C-----SSEEEEESCTTTSC----GGGSCCSEEEEECCGG
T ss_pred CCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhcc--C-----CCeEEEECchhhCC----cccCCccEEEEeCccc
Confidence 7999999999873 46899999999999999999983 2 36789999997642 1123699999997 65
Q ss_pred CCHHHHHHHHH
Q 019408 81 SDSSFLRTVFN 91 (341)
Q Consensus 81 sp~~fld~al~ 91 (341)
...+.+...++
T Consensus 126 is~pil~~lL~ 136 (295)
T 3gru_A 126 ISSPITFKLIK 136 (295)
T ss_dssp GHHHHHHHHHH
T ss_pred ccHHHHHHHHh
Confidence 55566554443
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0026 Score=54.77 Aligned_cols=85 Identities=14% Similarity=0.090 Sum_probs=55.2
Q ss_pred ccccHhHHHHhhhCC--CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHH------------------
Q 019408 2 CGCGIRSLRYLAEAK--ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVL------------------ 61 (341)
Q Consensus 2 agsG~rgir~a~e~g--a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l------------------ 61 (341)
||+|..++..+...+ ..+|+++|+|+.+ .. ..+++.++|+.+..
T Consensus 31 cG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-----~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~ 94 (201)
T 2plw_A 31 CYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-----PNVYFIQGEIGKDNMNNIKNINYIDNMNNNSV 94 (201)
T ss_dssp CTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-----TTCEEEECCTTTTSSCCC-----------CHH
T ss_pred CCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-----CCceEEEccccchhhhhhccccccccccchhh
Confidence 799999999987544 4689999999842 11 13455666664421
Q ss_pred -HHh--hhcCCcccEEEeCC-CCC-----CH---------HHHHHHHHhcccCCEEEEE
Q 019408 62 -SEC--YLKREFFDLIDIDS-FGS-----DS---------SFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 62 -~~~--~~~~~~fDvIdlDP-ygs-----p~---------~fld~al~~v~~gGlL~vt 102 (341)
... ......||+|+.|+ +.. .. ..+..+.+.|++||.++++
T Consensus 95 ~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 153 (201)
T 2plw_A 95 DYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK 153 (201)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 000 01235799999996 211 00 1455677899999999974
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.02 Score=52.62 Aligned_cols=99 Identities=8% Similarity=0.032 Sum_probs=64.9
Q ss_pred ccccHhHHHHhhh---C--CCC-EEEEeeCCHHHHHHHHHHHHHc-CCCCCCCccEEEEeccHHHHHHHhh--hcCCccc
Q 019408 2 CGCGIRSLRYLAE---A--KAD-FVMANDGNDAHRRVILGNLKSI-ERGSGDEKRWVVTHFDANRVLSECY--LKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~--ga~-~V~~~Dis~~A~~~i~~N~~~n-~~~~~~~~~~~v~~~DA~~~l~~~~--~~~~~fD 72 (341)
||+|..++..+.. . ++. .++++|.|++.++..+++++.. ++. ...+.+...|+..+..... .....||
T Consensus 61 ~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~fD 137 (292)
T 2aot_A 61 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE---NVKFAWHKETSSEYQSRMLEKKELQKWD 137 (292)
T ss_dssp CTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCT---TEEEEEECSCHHHHHHHHHTTTCCCCEE
T ss_pred CCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCC---cceEEEEecchhhhhhhhccccCCCcee
Confidence 7899877654322 1 332 3499999999999999998743 332 0234556788876542210 1245799
Q ss_pred EEEeCC----CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 73 LIDIDS----FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 73 vIdlDP----ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+|..== +..+..++....+.|++||.|.+..
T Consensus 138 ~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 138 FIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 986542 2224567888889999999999853
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0048 Score=58.50 Aligned_cols=54 Identities=15% Similarity=0.125 Sum_probs=40.9
Q ss_pred cEEEE-eccHHHHHHHhhhcCCcccEEEeCC-CCCC--------------HHHHHHHHHhcccCCEEEEEec
Q 019408 49 RWVVT-HFDANRVLSECYLKREFFDLIDIDS-FGSD--------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 49 ~~~v~-~~DA~~~l~~~~~~~~~fDvIdlDP-ygsp--------------~~fld~al~~v~~gGlL~vt~T 104 (341)
...++ ++|+.++|..+ ..+.||+|++|| |+.. .+.+..+.+.|+++|.|++...
T Consensus 38 ~~~l~i~gD~l~~L~~l--~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~ 107 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKL--PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 107 (319)
T ss_dssp EEEEEEECCHHHHHHTS--CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cceEEECCcHHHHHHhC--ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 46688 99999999765 345899999999 8753 1233455678999999999554
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.004 Score=63.15 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=68.3
Q ss_pred CccccHhHHHHhhh---CC----------CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc
Q 019408 1 MCGCGIRSLRYLAE---AK----------ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK 67 (341)
Q Consensus 1 fagsG~rgir~a~e---~g----------a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~ 67 (341)
.||||.+=+.+... .+ -..++.+|+++.++.+++.|+-+.+++ ...+.++|....-......
T Consensus 225 acGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-----~~~I~~~dtL~~~~~~~~~ 299 (530)
T 3ufb_A 225 ACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-----YPRIDPENSLRFPLREMGD 299 (530)
T ss_dssp TCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-----CCEEECSCTTCSCGGGCCG
T ss_pred CCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-----cccccccccccCchhhhcc
Confidence 38999997766432 11 135899999999999999999998874 3456788875421111122
Q ss_pred CCcccEEEeCC-CCCC-------------------HHHHHHHHHhcc-------cCCEEEEEe
Q 019408 68 REFFDLIDIDS-FGSD-------------------SSFLRTVFNAVK-------RDGLLYLTS 103 (341)
Q Consensus 68 ~~~fDvIdlDP-ygsp-------------------~~fld~al~~v~-------~gGlL~vt~ 103 (341)
..+||+|+..| ||.. ..|+...++.|+ +||.+++--
T Consensus 300 ~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl 362 (530)
T 3ufb_A 300 KDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV 362 (530)
T ss_dssp GGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred cccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence 35799999999 8741 136677777776 689988643
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0032 Score=58.52 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=62.2
Q ss_pred ccccH----hHHHHhhhCC----CCEEEEeeCCHHHHHHHHHHHHH----cCCC-------------CCCC---------
Q 019408 2 CGCGI----RSLRYLAEAK----ADFVMANDGNDAHRRVILGNLKS----IERG-------------SGDE--------- 47 (341)
Q Consensus 2 agsG~----rgir~a~e~g----a~~V~~~Dis~~A~~~i~~N~~~----n~~~-------------~~~~--------- 47 (341)
||||- .++-.+...+ --+|++.|+|+.+++.+++|+-. .++. ..++
T Consensus 114 CgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr 193 (274)
T 1af7_A 114 ASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELA 193 (274)
T ss_dssp CTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHH
T ss_pred ccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhc
Confidence 68897 5665554322 13799999999999999998620 0000 0000
Q ss_pred ccEEEEeccHHHHHHHhhhcCCcccEEEeCC---CCC-C--HHHHHHHHHhcccCCEEEEEecCC
Q 019408 48 KRWVVTHFDANRVLSECYLKREFFDLIDIDS---FGS-D--SSFLRTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 48 ~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP---ygs-p--~~fld~al~~v~~gGlL~vt~TD~ 106 (341)
..+++.+.|..+. .......||+|+.== |-. + ...+....+.|++||+|.+..+++
T Consensus 194 ~~V~F~~~dl~~~---~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE~ 255 (274)
T 1af7_A 194 NYVEFSSVNLLEK---QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSEN 255 (274)
T ss_dssp TTEEEEECCTTCS---SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTCC
T ss_pred ccCeEEecccCCC---CCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEeccc
Confidence 1467777886541 001124799998632 222 2 244566678999999999865544
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0011 Score=60.96 Aligned_cols=100 Identities=14% Similarity=0.029 Sum_probs=60.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc-----------------CCCCC--------CCccEEEEecc
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI-----------------ERGSG--------DEKRWVVTHFD 56 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n-----------------~~~~~--------~~~~~~v~~~D 56 (341)
||+|...+..+. .+..+|+++|+|+.+++.++++++.. +.... ....+++.+.|
T Consensus 80 cG~G~~~~l~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D 158 (289)
T 2g72_A 80 SGPTVYQLLSAC-SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPID 158 (289)
T ss_dssp CTTCCGGGTTGG-GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCC
T ss_pred CCcChHHHHhhc-cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhhceEEecc
Confidence 688985554444 34458999999999999999876421 10000 00013466667
Q ss_pred HHHHHHH--hhhcCCcccEEEeCC-CC-------CCHHHHHHHHHhcccCCEEEEE
Q 019408 57 ANRVLSE--CYLKREFFDLIDIDS-FG-------SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 57 A~~~l~~--~~~~~~~fDvIdlDP-yg-------sp~~fld~al~~v~~gGlL~vt 102 (341)
+...+.- .......||+|+.-- +- .+..++..+.+.|++||.|+++
T Consensus 159 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 159 VHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp TTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 7542210 001124599997653 11 1234566777899999999985
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0028 Score=59.26 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--CCCCHHHHHHHHHhcccCCEEEE
Q 019408 29 HRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--FGSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 29 A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--ygsp~~fld~al~~v~~gGlL~v 101 (341)
.++.+++|++..++. .++++++.+|+.+.|... ...+||+|+||- |.+-..+++.....|++||+|.+
T Consensus 173 ~~~~ar~n~~~~gl~---~~~I~li~Gda~etL~~~--~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~ 242 (282)
T 2wk1_A 173 SEEEVRRNFRNYDLL---DEQVRFLPGWFKDTLPTA--PIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIV 242 (282)
T ss_dssp CHHHHHHHHHHTTCC---STTEEEEESCHHHHSTTC--CCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCC---cCceEEEEeCHHHHHhhC--CCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEE
Confidence 367789999998872 257999999999988754 245899999997 43223678888999999999986
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.007 Score=57.28 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=42.8
Q ss_pred ccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCCC-----------------HHHHHHHHHhcccCCEEEEEecCC
Q 019408 48 KRWVVTHFDANRVLSECYLKREFFDLIDIDS-FGSD-----------------SSFLRTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 48 ~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygsp-----------------~~fld~al~~v~~gGlL~vt~TD~ 106 (341)
....++++|+.++|..+ ..+.||+|++|| |+.. .+.+..+.+.|++||.|++...|.
T Consensus 13 ~~~~ii~gD~~~~l~~l--~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~ 87 (323)
T 1boo_A 13 SNGSMYIGDSLELLESF--PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 87 (323)
T ss_dssp SSEEEEESCHHHHGGGS--CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CCceEEeCcHHHHHhhC--CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence 35678999999988754 346899999999 8654 123445668899999999966543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0054 Score=56.30 Aligned_cols=79 Identities=13% Similarity=0.097 Sum_probs=57.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHH-HHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV-LSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~-l~~~~~~~~~fDvIdlDP-y 79 (341)
+|+|..+...+. .+ .+|+++|+|++.++.+++|++. . .+++++++|+.++ +... ..+..|| |+-+| |
T Consensus 38 ~G~G~lt~~La~-~~-~~V~avEid~~~~~~~~~~~~~--~-----~~v~~i~~D~~~~~~~~~-~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 38 PGRGALTDYLLT-EC-DNLALVEIDRDLVAFLQKKYNQ--Q-----KNITIYQNDALQFDFSSV-KTDKPLR-VVGNLPY 106 (255)
T ss_dssp CTTTTTHHHHTT-TS-SEEEEEECCHHHHHHHHHHHTT--C-----TTEEEEESCTTTCCGGGS-CCSSCEE-EEEECCH
T ss_pred ccccHHHHHHHH-hC-CEEEEEECCHHHHHHHHHHHhh--C-----CCcEEEEcchHhCCHHHh-ccCCCeE-EEecCCc
Confidence 799999999987 45 6899999999999999999874 2 3678999999876 2221 1134688 55565 5
Q ss_pred CCCHHHHHHHHH
Q 019408 80 GSDSSFLRTVFN 91 (341)
Q Consensus 80 gsp~~fld~al~ 91 (341)
.-.++.+...+.
T Consensus 107 ~is~~il~~ll~ 118 (255)
T 3tqs_A 107 NISTPLLFHLFS 118 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHh
Confidence 434455555443
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.014 Score=53.28 Aligned_cols=77 Identities=10% Similarity=0.013 Sum_probs=57.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHH-HHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVL-SECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l-~~~~~~~~~fDvIdlDP-y 79 (341)
+|+|..+...+. .|+.+|+++|+|+.+++.+++| . . .+++++++|+.++- ... ...| .|+.+| |
T Consensus 40 ~G~G~lt~~L~~-~~~~~v~avEid~~~~~~~~~~-~---~-----~~v~~i~~D~~~~~~~~~---~~~~-~vv~NlPy 105 (249)
T 3ftd_A 40 GGTGNLTKVLLQ-HPLKKLYVIELDREMVENLKSI-G---D-----ERLEVINEDASKFPFCSL---GKEL-KVVGNLPY 105 (249)
T ss_dssp SCHHHHHHHHTT-SCCSEEEEECCCHHHHHHHTTS-C---C-----TTEEEECSCTTTCCGGGS---CSSE-EEEEECCT
T ss_pred CchHHHHHHHHH-cCCCeEEEEECCHHHHHHHHhc-c---C-----CCeEEEEcchhhCChhHc---cCCc-EEEEECch
Confidence 799999999987 5778999999999999999998 2 1 36789999997652 111 1133 677776 7
Q ss_pred CCCHHHHHHHHHh
Q 019408 80 GSDSSFLRTVFNA 92 (341)
Q Consensus 80 gsp~~fld~al~~ 92 (341)
.-.++.+...+..
T Consensus 106 ~i~~~il~~ll~~ 118 (249)
T 3ftd_A 106 NVASLIIENTVYN 118 (249)
T ss_dssp TTHHHHHHHHHHT
T ss_pred hccHHHHHHHHhc
Confidence 6666777666553
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0093 Score=56.00 Aligned_cols=67 Identities=15% Similarity=0.013 Sum_probs=49.4
Q ss_pred CccccHhHHHHhhhCCCCE--EEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKADF--VMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~--V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
|||.|.+++-+.+ +|.+. |+++|+++.|+++.+.|.. ...++++|+.++..+.......+|+|...|
T Consensus 23 FaG~GG~~~g~~~-aG~~~~~v~a~E~d~~a~~ty~~N~~----------~~~~~~~DI~~i~~~~i~~~~~~Dll~ggp 91 (295)
T 2qrv_A 23 FDGIATGLLVLKD-LGIQVDRYIASEVCEDSITVGMVRHQ----------GKIMYVGDVRSVTQKHIQEWGPFDLVIGGS 91 (295)
T ss_dssp TCTTTHHHHHHHH-TTBCEEEEEEECCCHHHHHHHHHHTT----------TCEEEECCGGGCCHHHHHHTCCCSEEEECC
T ss_pred CcCccHHHHHHHH-CCCccceEEEEECCHHHHHHHHHhCC----------CCceeCCChHHccHHHhcccCCcCEEEecC
Confidence 8999998887766 78877 7999999999999999863 113556777665433221123689999998
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.01 Score=53.72 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=56.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|+|..++..+. .+ .+|+++|+|+.+++.+++|++.. .+++++++|+.++-. ..+..| .|+.+| |.
T Consensus 39 ~G~G~lt~~l~~-~~-~~v~~vD~~~~~~~~a~~~~~~~-------~~v~~~~~D~~~~~~---~~~~~~-~vv~nlPy~ 105 (244)
T 1qam_A 39 SGKGHFTLELVQ-RC-NFVTAIEIDHKLCKTTENKLVDH-------DNFQVLNKDILQFKF---PKNQSY-KIFGNIPYN 105 (244)
T ss_dssp CTTSHHHHHHHH-HS-SEEEEECSCHHHHHHHHHHTTTC-------CSEEEECCCGGGCCC---CSSCCC-EEEEECCGG
T ss_pred CCchHHHHHHHH-cC-CeEEEEECCHHHHHHHHHhhccC-------CCeEEEEChHHhCCc---ccCCCe-EEEEeCCcc
Confidence 799999999987 45 68999999999999999998632 367899999976421 112345 466665 76
Q ss_pred CCHHHHHHHHHh
Q 019408 81 SDSSFLRTVFNA 92 (341)
Q Consensus 81 sp~~fld~al~~ 92 (341)
..++.+...+..
T Consensus 106 ~~~~~l~~~l~~ 117 (244)
T 1qam_A 106 ISTDIIRKIVFD 117 (244)
T ss_dssp GHHHHHHHHHHS
T ss_pred cCHHHHHHHHhc
Confidence 555665555543
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.005 Score=60.54 Aligned_cols=86 Identities=20% Similarity=0.128 Sum_probs=59.0
Q ss_pred ccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHH--HHHhhhcCCcccEEEeCCCC
Q 019408 4 CGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV--LSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 4 sG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~--l~~~~~~~~~fDvIdlDPyg 80 (341)
+|..+++++++. ...+|+.+|+|+... .. . .+++++++|+.++ +.........||+|+.|=.-
T Consensus 233 TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~-~-----~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgsH 298 (419)
T 3sso_A 233 WGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VD-E-----LRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGSH 298 (419)
T ss_dssp CCCHHHHHHHHHCTTCEEEEEESSCCGG--------GC-B-----TTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSCC
T ss_pred CCHHHHHHHHHhCCCCEEEEEECCHHHh--------hc-C-----CCcEEEEecccccchhhhhhcccCCccEEEECCcc
Confidence 678899998862 235899999999852 11 1 4688999998764 32222213579999987411
Q ss_pred C---CHHHHHHHHHhcccCCEEEEEe
Q 019408 81 S---DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 s---p~~fld~al~~v~~gGlL~vt~ 103 (341)
. ...++..+.+.||+||++++.-
T Consensus 299 ~~~d~~~aL~el~rvLKPGGvlVi~D 324 (419)
T 3sso_A 299 INAHVRTSFAALFPHVRPGGLYVIED 324 (419)
T ss_dssp CHHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred cchhHHHHHHHHHHhcCCCeEEEEEe
Confidence 1 2345677889999999999853
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.016 Score=53.84 Aligned_cols=72 Identities=18% Similarity=0.122 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCCCH----------------HH-------H
Q 019408 31 RVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FGSDS----------------SF-------L 86 (341)
Q Consensus 31 ~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygsp~----------------~f-------l 86 (341)
.-+++|.+..+.- ....++++++|+.++|..+ ..+.||+|+.|| |.... .| +
T Consensus 5 ~~~~~~~~~gd~~--~~~~~~i~~gD~~~~l~~l--~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~ 80 (297)
T 2zig_A 5 PKAKEAFSEGEKV--SFGVHRLHVGDAREVLASF--PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVW 80 (297)
T ss_dssp ------------------CEEEEESCHHHHHTTS--CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhCccccc--cccCCEEEECcHHHHHhhC--CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHH
Confidence 3455555543220 0135679999999988654 346899999999 75321 12 2
Q ss_pred HHHHHhcccCCEEEEEecCC
Q 019408 87 RTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 87 d~al~~v~~gGlL~vt~TD~ 106 (341)
..+.+.|++||.|++...|.
T Consensus 81 ~~~~rvLk~~G~l~i~~~d~ 100 (297)
T 2zig_A 81 REVFRLLVPGGRLVIVVGDV 100 (297)
T ss_dssp HHHHHHEEEEEEEEEEECCE
T ss_pred HHHHHHcCCCcEEEEEECCC
Confidence 36678899999999866543
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.011 Score=54.76 Aligned_cols=78 Identities=17% Similarity=0.060 Sum_probs=60.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|+|..+...+. .+ .+|+++|+|++.++.+++|+.. .+++++++|+.++-.. ....||.|+-.| |.
T Consensus 55 ~G~G~lt~~L~~-~~-~~V~avEid~~~~~~l~~~~~~--------~~v~vi~~D~l~~~~~---~~~~~~~iv~NlPy~ 121 (271)
T 3fut_A 55 PGLGALTRALLE-AG-AEVTAIEKDLRLRPVLEETLSG--------LPVRLVFQDALLYPWE---EVPQGSLLVANLPYH 121 (271)
T ss_dssp CTTSHHHHHHHH-TT-CCEEEEESCGGGHHHHHHHTTT--------SSEEEEESCGGGSCGG---GSCTTEEEEEEECSS
T ss_pred CchHHHHHHHHH-cC-CEEEEEECCHHHHHHHHHhcCC--------CCEEEEECChhhCChh---hccCccEEEecCccc
Confidence 799999999987 46 5799999999999999998862 3578999999765211 112588888886 87
Q ss_pred CCHHHHHHHHHh
Q 019408 81 SDSSFLRTVFNA 92 (341)
Q Consensus 81 sp~~fld~al~~ 92 (341)
-.++.+...+..
T Consensus 122 iss~il~~ll~~ 133 (271)
T 3fut_A 122 IATPLVTRLLKT 133 (271)
T ss_dssp CCHHHHHHHHHH
T ss_pred ccHHHHHHHhcC
Confidence 677887766654
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.00027 Score=63.92 Aligned_cols=74 Identities=12% Similarity=0.087 Sum_probs=54.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++..+. .+ .+|+++|+|+.+++.+++|++. . .+++++++|+.++-. ..+..| .|+.+| |.
T Consensus 38 ~G~G~~~~~l~~-~~-~~v~~id~~~~~~~~a~~~~~~--~-----~~v~~~~~D~~~~~~---~~~~~f-~vv~n~Py~ 104 (245)
T 1yub_A 38 TGKGHLTTKLAK-IS-KQVTSIELDSHLFNLSSEKLKL--N-----TRVTLIHQDILQFQF---PNKQRY-KIVGNIPYH 104 (245)
T ss_dssp CCCSSCSHHHHH-HS-SEEEESSSSCSSSSSSSCTTTT--C-----SEEEECCSCCTTTTC---CCSSEE-EEEEECCSS
T ss_pred CCCCHHHHHHHH-hC-CeEEEEECCHHHHHHHHHHhcc--C-----CceEEEECChhhcCc---ccCCCc-EEEEeCCcc
Confidence 799999999987 45 7899999999999999998862 2 468899999876421 112468 667776 76
Q ss_pred CCHHHHHH
Q 019408 81 SDSSFLRT 88 (341)
Q Consensus 81 sp~~fld~ 88 (341)
...+.+..
T Consensus 105 ~~~~~~~~ 112 (245)
T 1yub_A 105 LSTQIIKK 112 (245)
T ss_dssp SCHHHHHH
T ss_pred ccHHHHHH
Confidence 55555443
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.28 E-value=0.025 Score=53.50 Aligned_cols=89 Identities=10% Similarity=-0.045 Sum_probs=62.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|..++.+|+..|+.+|+++|.+++..+++++ .+.+ .-+.....|..+.+.+.. .+..+|+|+ |.-|.+
T Consensus 177 ~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~----~vi~~~~~~~~~~v~~~t-~g~g~D~v~-d~~g~~ 246 (352)
T 3fpc_A 177 PVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGAT----DIINYKNGDIVEQILKAT-DGKGVDKVV-IAGGDV 246 (352)
T ss_dssp HHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTCC----EEECGGGSCHHHHHHHHT-TTCCEEEEE-ECSSCT
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc----eEEcCCCcCHHHHHHHHc-CCCCCCEEE-ECCCCh
Confidence 457788888888899889999999998888765 4542 111111345555554432 345799885 776654
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
..++.++++++++|-+.+.
T Consensus 247 -~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 247 -HTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp -THHHHHHHHEEEEEEEEEC
T ss_pred -HHHHHHHHHHhcCCEEEEe
Confidence 5678899999999999863
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.70 E-value=0.16 Score=48.05 Aligned_cols=87 Identities=14% Similarity=0.069 Sum_probs=58.5
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe----ccHHHHHHHhhhcCCcccEEEeCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH----FDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~----~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+.|...+.+|+..|+.+|+++|.+++-.+++++ .+.+ .+.-.. .|..+.+.+.. +..+|+|+ |.
T Consensus 182 ~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~-----~vi~~~~~~~~~~~~~i~~~~--~~g~D~vi-d~ 249 (356)
T 1pl8_A 182 PIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD-----LVLQISKESPQEIARKVEGQL--GCKPEVTI-EC 249 (356)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS-----EEEECSSCCHHHHHHHHHHHH--TSCCSEEE-EC
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC-----EEEcCcccccchHHHHHHHHh--CCCCCEEE-EC
Confidence 457788888887899899999999998888764 5542 221111 22222333322 24699874 66
Q ss_pred CCCCHHHHHHHHHhcccCCEEEEE
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~vt 102 (341)
-|.+ ..++.++++++++|.+.+.
T Consensus 250 ~g~~-~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 250 TGAE-ASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp SCCH-HHHHHHHHHSCTTCEEEEC
T ss_pred CCCh-HHHHHHHHHhcCCCEEEEE
Confidence 5543 5678899999999998864
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.12 Score=48.83 Aligned_cols=90 Identities=12% Similarity=0.042 Sum_probs=62.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEE-----eccHHHHHHHhhhcCCcccEEEe
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVT-----HFDANRVLSECYLKREFFDLIDI 76 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~-----~~DA~~~l~~~~~~~~~fDvIdl 76 (341)
++.|..++.+|+..|++.|++.|.|++-.+++++- . . ..+... ..|..+.+.+. ..+..+|+|+
T Consensus 189 G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~-~-------~~~~~~~~~~~~~~~~~~v~~~-t~g~g~Dvvi- 257 (363)
T 3m6i_A 189 GPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C-P-------EVVTHKVERLSAEESAKKIVES-FGGIEPAVAL- 257 (363)
T ss_dssp SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C-T-------TCEEEECCSCCHHHHHHHHHHH-TSSCCCSEEE-
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c-h-------hcccccccccchHHHHHHHHHH-hCCCCCCEEE-
Confidence 35688889999988998899999999999998873 1 1 111111 13334444433 2355799864
Q ss_pred CCCCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 77 DSFGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 77 DPygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
|.-|.+ ..++.++++++++|.+.+..
T Consensus 258 d~~g~~-~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 258 ECTGVE-SSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp ECSCCH-HHHHHHHHHSCTTCEEEECC
T ss_pred ECCCCh-HHHHHHHHHhcCCCEEEEEc
Confidence 666653 47889999999999998743
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.07 Score=50.05 Aligned_cols=87 Identities=17% Similarity=0.082 Sum_probs=60.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
++.|...+.+|+..|+ +|++.|.|++-.+.+++ .+.+ ..+.....|..+.+.+. .+ .+|+|+. .-|.
T Consensus 176 G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~----~~i~~~~~~~~~~~~~~--~g-~~d~vid-~~g~ 242 (340)
T 3s2e_A 176 GGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LGAE----VAVNARDTDPAAWLQKE--IG-GAHGVLV-TAVS 242 (340)
T ss_dssp STTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS----EEEETTTSCHHHHHHHH--HS-SEEEEEE-SSCC
T ss_pred CHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCCC----EEEeCCCcCHHHHHHHh--CC-CCCEEEE-eCCC
Confidence 3568888999998898 89999999999888765 5542 11111123555555442 23 6898754 4343
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
+ ..++.++++++++|.+.+.
T Consensus 243 ~-~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 243 P-KAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp H-HHHHHHHHHEEEEEEEEEC
T ss_pred H-HHHHHHHHHhccCCEEEEe
Confidence 3 6788999999999999864
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.0045 Score=57.46 Aligned_cols=86 Identities=10% Similarity=-0.001 Sum_probs=55.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHH-cCCCCCCCccEEEE--eccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS-IERGSGDEKRWVVT--HFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~-n~~~~~~~~~~~v~--~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
||+|..+..++. . .+|+++|+++. ...++++... ... +..++++ ++|+..+ ..+.||+|+.|.
T Consensus 91 cGtG~~s~~la~-~--~~V~gVD~s~m-~~~a~~~~~~~~~~----~~~v~~~~~~~D~~~l------~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 91 CGRGSWSYYAAS-Q--PNVREVKAYTL-GTSGHEKPRLVETF----GWNLITFKSKVDVTKM------EPFQADTVLCDI 156 (276)
T ss_dssp CTTCHHHHHHHT-S--TTEEEEEEECC-CCTTSCCCCCCCCT----TGGGEEEECSCCGGGC------CCCCCSEEEECC
T ss_pred cCCCHHHHHHHH-c--CCEEEEECchh-hhhhhhchhhhhhc----CCCeEEEeccCcHhhC------CCCCcCEEEECC
Confidence 799999998887 4 57999999983 1111111000 000 1146677 8898752 246899999996
Q ss_pred -CCCCHH---------HHHHHHHhcccCC--EEEE
Q 019408 79 -FGSDSS---------FLRTVFNAVKRDG--LLYL 101 (341)
Q Consensus 79 -ygsp~~---------fld~al~~v~~gG--lL~v 101 (341)
+.++.+ .++.+.+.|++|| .+++
T Consensus 157 ~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~ 191 (276)
T 2wa2_A 157 GESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCV 191 (276)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred CcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 222212 4556668899999 8776
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.14 Score=47.83 Aligned_cols=91 Identities=13% Similarity=0.091 Sum_probs=63.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|.|..++.+|+..|+..++++|.+++-.+++++ .|.+ ..+.....|..+...... .+..+|+ .+|.-|.
T Consensus 170 G~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~----~~i~~~~~~~~~~~~~~~-~~~g~d~-v~d~~G~ 239 (346)
T 4a2c_A 170 GTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAM----QTFNSSEMSAPQMQSVLR-ELRFNQL-ILETAGV 239 (346)
T ss_dssp SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS----EEEETTTSCHHHHHHHHG-GGCSSEE-EEECSCS
T ss_pred CCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCe----EEEeCCCCCHHHHHHhhc-ccCCccc-ccccccc
Confidence 4568888889988899999999999998888765 5652 222222345555554432 2344565 4676665
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
+ ..++.++++++++|.+.+..
T Consensus 240 ~-~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 240 P-QTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp H-HHHHHHHHHCCTTCEEEECC
T ss_pred c-chhhhhhheecCCeEEEEEe
Confidence 4 67889999999999998743
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.11 Score=50.08 Aligned_cols=90 Identities=10% Similarity=0.059 Sum_probs=61.7
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|..++.+|+..|+.+|+++|.+++-.+++++ .|.+ .-+.....|..+.+.+.. .+..+|+|+ |.-|.+
T Consensus 224 ~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~----~vi~~~~~~~~~~i~~~t-~g~g~D~vi-d~~g~~ 293 (404)
T 3ip1_A 224 PIGLAAVAILKHAGASKVILSEPSEVRRNLAKE----LGAD----HVIDPTKENFVEAVLDYT-NGLGAKLFL-EATGVP 293 (404)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS----EEECTTTSCHHHHHHHHT-TTCCCSEEE-ECSSCH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC----EEEcCCCCCHHHHHHHHh-CCCCCCEEE-ECCCCc
Confidence 567788888888899899999999999888865 4542 111111245555555442 345799774 777765
Q ss_pred HHHHHHHHHhc----ccCCEEEEE
Q 019408 83 SSFLRTVFNAV----KRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v----~~gGlL~vt 102 (341)
...++.+++++ +++|-+.+.
T Consensus 294 ~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 294 QLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp HHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred HHHHHHHHHHHHhccCCCcEEEEe
Confidence 44667777777 999998873
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.074 Score=50.59 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=59.8
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+.+|+++|.|++..+++++ .+.+ .-+.....|..+.+.+.. .+ .||+| +|.-|.+
T Consensus 201 ~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~~~~~~~~~~-~g-g~D~v-id~~g~~ 269 (371)
T 1f8f_A 201 AVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT----HVINSKTQDPVAAIKEIT-DG-GVNFA-LESTGSP 269 (371)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS----EEEETTTSCHHHHHHHHT-TS-CEEEE-EECSCCH
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCC----EEecCCccCHHHHHHHhc-CC-CCcEE-EECCCCH
Confidence 457778888887899889999999999888764 4542 111111234444444432 23 79977 4665543
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
+.++.++++++++|.+.+.
T Consensus 270 -~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 270 -EILKQGVDALGILGKIAVV 288 (371)
T ss_dssp -HHHHHHHHTEEEEEEEEEC
T ss_pred -HHHHHHHHHHhcCCEEEEe
Confidence 6788999999999998864
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.087 Score=50.42 Aligned_cols=88 Identities=13% Similarity=0.126 Sum_probs=59.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEE-----eccHHHHHHHhhhcCCcccEEEe
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVT-----HFDANRVLSECYLKREFFDLIDI 76 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~-----~~DA~~~l~~~~~~~~~fDvIdl 76 (341)
++.|...+.+|+..|+.+|++.|.|++..+.+++ .+.+ .+ +. ..|..+.+.+.. .+..+|+| +
T Consensus 205 G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~-----~v-i~~~~~~~~~~~~~v~~~~-~g~g~Dvv-i 272 (380)
T 1vj0_A 205 GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD-----LT-LNRRETSVEERRKAIMDIT-HGRGADFI-L 272 (380)
T ss_dssp SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS-----EE-EETTTSCHHHHHHHHHHHT-TTSCEEEE-E
T ss_pred CHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc-----EE-EeccccCcchHHHHHHHHh-CCCCCcEE-E
Confidence 3567788888887887789999999998888764 5542 22 21 123333343332 23469987 4
Q ss_pred CCCCCCHHHHHHHHHhcccCCEEEEE
Q 019408 77 DSFGSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 77 DPygsp~~fld~al~~v~~gGlL~vt 102 (341)
|.-|.+ ..++.++++++++|.+.+.
T Consensus 273 d~~g~~-~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 273 EATGDS-RALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp ECSSCT-THHHHHHHHEEEEEEEEEC
T ss_pred ECCCCH-HHHHHHHHHHhcCCEEEEE
Confidence 665543 5678899999999998864
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.11 Score=49.87 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=59.7
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEecc-HHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFD-ANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~D-A~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|..++.+|+..|+.+|+++|.+++-.+++++ .|. +.+.....| ..+.+.+. ..+..+|+| +|.-|.
T Consensus 196 ~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa-----~~i~~~~~~~~~~~v~~~-t~g~g~Dvv-id~~G~ 264 (398)
T 1kol_A 196 PVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF-----EIADLSLDTPLHEQIAAL-LGEPEVDCA-VDAVGF 264 (398)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC-----EEEETTSSSCHHHHHHHH-HSSSCEEEE-EECCCT
T ss_pred HHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC-----cEEccCCcchHHHHHHHH-hCCCCCCEE-EECCCC
Confidence 567888899988899899999999999888865 454 211111122 33334333 223468987 466554
Q ss_pred C--------------HHHHHHHHHhcccCCEEEEE
Q 019408 82 D--------------SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p--------------~~fld~al~~v~~gGlL~vt 102 (341)
+ .+.++.++++++++|-+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 265 EARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp TCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred cccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 3 14788999999999998763
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.081 Score=49.87 Aligned_cols=86 Identities=12% Similarity=0.100 Sum_probs=58.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+ +|++.|.+++..+.+++ .+.+ .+.-...|..+.+.+. .+..+|+| +|.-|.+
T Consensus 162 ~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~-----~vi~~~~~~~~~~~~~--~~~g~Dvv-~d~~g~~ 228 (346)
T 3fbg_A 162 GVGSIATQIAKAYGL-RVITTASRNETIEWTKK----MGAD-----IVLNHKESLLNQFKTQ--GIELVDYV-FCTFNTD 228 (346)
T ss_dssp HHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHH----HTCS-----EEECTTSCHHHHHHHH--TCCCEEEE-EESSCHH
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCc-----EEEECCccHHHHHHHh--CCCCccEE-EECCCch
Confidence 456666777777888 89999999999888876 4542 2211233444445443 34579966 4665542
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
..++.++++++++|-++..
T Consensus 229 -~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 229 -MYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp -HHHHHHHHHEEEEEEEEES
T ss_pred -HHHHHHHHHhccCCEEEEE
Confidence 5678999999999999753
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.026 Score=53.83 Aligned_cols=66 Identities=15% Similarity=0.104 Sum_probs=46.8
Q ss_pred CccccHhHHHHhhhCCC--CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKA--DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga--~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
|||.|.+++-+.. +|. +.|+++|+++.|+++.+.|.... .++++|..++..+... ...+|+|...|
T Consensus 10 FaG~GG~~~G~~~-aG~~~~~v~a~e~d~~a~~ty~~N~~~~----------~~~~~DI~~~~~~~~~-~~~~D~l~ggp 77 (333)
T 4h0n_A 10 YSGIGGMHCAWKE-SGLDGEIVAAVDINTVANSVYKHNFPET----------NLLNRNIQQLTPQVIK-KWNVDTILMSP 77 (333)
T ss_dssp TCTTTHHHHHHHH-HTCSEEEEEEECCCHHHHHHHHHHCTTS----------CEECCCGGGCCHHHHH-HTTCCEEEECC
T ss_pred CcCccHHHHHHHH-cCCCceEEEEEeCCHHHHHHHHHhCCCC----------ceeccccccCCHHHhc-cCCCCEEEecC
Confidence 7999998877755 576 67899999999999999997521 2345565544322111 12589999998
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.066 Score=51.13 Aligned_cols=91 Identities=14% Similarity=0.109 Sum_probs=62.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhh-hcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECY-LKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~-~~~~~fDvIdlDPyg 80 (341)
++.|..++.+|+..|+.+|+++|.+++..+++++ .|.+ ..+.....|..+.+.+.. ..+..+|+| +|.-|
T Consensus 192 G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~~~~~i~~~~~~~~gg~Dvv-id~~G 262 (370)
T 4ej6_A 192 GVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGAT----ATVDPSAGDVVEAIAGPVGLVPGGVDVV-IECAG 262 (370)
T ss_dssp SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS----EEECTTSSCHHHHHHSTTSSSTTCEEEE-EECSC
T ss_pred CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC----EEECCCCcCHHHHHHhhhhccCCCCCEE-EECCC
Confidence 3568888899988899899999999999888766 5552 111112345555554310 112379986 46656
Q ss_pred CCHHHHHHHHHhcccCCEEEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt 102 (341)
.+ ..++.+++++++||.+.+.
T Consensus 263 ~~-~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 263 VA-ETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp CH-HHHHHHHHHEEEEEEEEEC
T ss_pred CH-HHHHHHHHHhccCCEEEEE
Confidence 43 6788999999999999874
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.02 Score=54.09 Aligned_cols=89 Identities=18% Similarity=0.135 Sum_probs=60.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
+|+|..++..+......+++.+|+ +..+. +++++..+.. +++++..+|+++- .+ .||+|++--
T Consensus 193 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~----~~v~~~~~d~~~~------~p-~~D~v~~~~vlh 258 (348)
T 3lst_A 193 GGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVA----GRWKVVEGDFLRE------VP-HADVHVLKRILH 258 (348)
T ss_dssp CTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGT----TSEEEEECCTTTC------CC-CCSEEEEESCGG
T ss_pred CccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCC----CCeEEEecCCCCC------CC-CCcEEEEehhcc
Confidence 699999999988633357899999 44444 4444433432 4688999998621 13 799997743
Q ss_pred -CCCC--HHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGSD--SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp--~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+ ..++..+.++|++||.|.+...
T Consensus 259 ~~~d~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 259 NWGDEDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp GSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 1112 3567788899999999998543
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.0048 Score=56.86 Aligned_cols=86 Identities=16% Similarity=-0.023 Sum_probs=54.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHH-cCCCCCCCccEEEE--eccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS-IERGSGDEKRWVVT--HFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~-n~~~~~~~~~~~v~--~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
||+|..+..++. . .+|+++|+++.+ ..++++... ... +..++++ ++|+..+ ..+.||+|+.|-
T Consensus 83 cGtG~~s~~la~-~--~~V~gvD~s~m~-~~a~~~~~~~~~~----~~~v~~~~~~~D~~~l------~~~~fD~V~sd~ 148 (265)
T 2oxt_A 83 CGRGGWSYYAAS-R--PHVMDVRAYTLG-VGGHEVPRITESY----GWNIVKFKSRVDIHTL------PVERTDVIMCDV 148 (265)
T ss_dssp CTTSHHHHHHHT-S--TTEEEEEEECCC-CSSCCCCCCCCBT----TGGGEEEECSCCTTTS------CCCCCSEEEECC
T ss_pred cCCCHHHHHHHH-c--CcEEEEECchhh-hhhhhhhhhhhcc----CCCeEEEecccCHhHC------CCCCCcEEEEeC
Confidence 799999988877 4 579999999831 111111000 000 0145677 8898752 246899999995
Q ss_pred -CCCCHH---------HHHHHHHhcccCC--EEEE
Q 019408 79 -FGSDSS---------FLRTVFNAVKRDG--LLYL 101 (341)
Q Consensus 79 -ygsp~~---------fld~al~~v~~gG--lL~v 101 (341)
+.++.+ .++.+.+.|++|| .+++
T Consensus 149 ~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~ 183 (265)
T 2oxt_A 149 GESSPKWSVESERTIKILELLEKWKVKNPSADFVV 183 (265)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred cccCCccchhHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 222222 4556668899999 8876
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.074 Score=50.78 Aligned_cols=88 Identities=13% Similarity=0.141 Sum_probs=61.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEE---eccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVT---HFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~---~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+.|..++.+|+..|+.+|+++|.+++-.+++++ .+.+ .+.-. ..|..+.+.+.. .+ .+|+| +|.-
T Consensus 204 ~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~-----~vi~~~~~~~~~~~~i~~~~-~g-g~D~v-id~~ 271 (378)
T 3uko_A 204 TVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN-----EFVNPKDHDKPIQEVIVDLT-DG-GVDYS-FECI 271 (378)
T ss_dssp HHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC-----EEECGGGCSSCHHHHHHHHT-TS-CBSEE-EECS
T ss_pred HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc-----EEEccccCchhHHHHHHHhc-CC-CCCEE-EECC
Confidence 467888888887899889999999998887654 5552 21111 234555555542 23 79987 4776
Q ss_pred CCCHHHHHHHHHhcccC-CEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRD-GLLYLTS 103 (341)
Q Consensus 80 gsp~~fld~al~~v~~g-GlL~vt~ 103 (341)
|.+ ..++.+++++++| |.+.+..
T Consensus 272 g~~-~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 272 GNV-SVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp CCH-HHHHHHHHTBCTTTCEEEECS
T ss_pred CCH-HHHHHHHHHhhccCCEEEEEc
Confidence 654 6788999999996 9888643
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.02 Score=53.56 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=48.7
Q ss_pred cccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEE-EeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 3 GCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVV-THFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 3 gsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v-~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
|+|. ..++...+ ..+|+++|+|+. + .+ +++ +++|+.++- ....||+|+.|++-
T Consensus 79 GpGs--~~~a~~~~~~~~V~gvDis~~----v------~~--------v~~~i~gD~~~~~-----~~~~fD~Vvsn~~~ 133 (290)
T 2xyq_A 79 APGT--AVLRQWLPTGTLLVDSDLNDF----V------SD--------ADSTLIGDCATVH-----TANKWDLIISDMYD 133 (290)
T ss_dssp CHHH--HHHHHHSCTTCEEEEEESSCC----B------CS--------SSEEEESCGGGCC-----CSSCEEEEEECCCC
T ss_pred CcHH--HHHHHHcCCCCEEEEEECCCC----C------CC--------CEEEEECccccCC-----ccCcccEEEEcCCc
Confidence 3366 22333234 368999999998 1 12 346 899986431 12479999999742
Q ss_pred CC---------------HHHHHHHHHhcccCCEEEEE
Q 019408 81 SD---------------SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp---------------~~fld~al~~v~~gGlL~vt 102 (341)
.. ...+..+.+.|++||.+++.
T Consensus 134 ~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~ 170 (290)
T 2xyq_A 134 PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 170 (290)
T ss_dssp CC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccccccccchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 11 13566778899999999984
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.17 Score=47.53 Aligned_cols=88 Identities=20% Similarity=0.179 Sum_probs=61.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|..++.+|+..|+.+|+++|.+++-.+++++ .+.+ .+.-...|..+.+.+.. .+..+|+| +|.-|.+
T Consensus 182 ~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~-----~~i~~~~~~~~~v~~~t-~g~g~d~v-~d~~G~~ 250 (345)
T 3jv7_A 182 GLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD-----AAVKSGAGAADAIRELT-GGQGATAV-FDFVGAQ 250 (345)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS-----EEEECSTTHHHHHHHHH-GGGCEEEE-EESSCCH
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC-----EEEcCCCcHHHHHHHHh-CCCCCeEE-EECCCCH
Confidence 457788888887677889999999999888765 5652 22222334444444432 34578965 5666653
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
..++.++++++++|-+.+.
T Consensus 251 -~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 251 -STIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp -HHHHHHHHHEEEEEEEEEC
T ss_pred -HHHHHHHHHHhcCCEEEEE
Confidence 4789999999999999874
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.031 Score=48.40 Aligned_cols=73 Identities=23% Similarity=0.186 Sum_probs=51.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..+..++ .+|+++|+|+. ++ ++.++|+.++ ......||+|+... +
T Consensus 76 ~G~G~~~~~l~-----~~v~~~D~s~~------------~~--------~~~~~d~~~~----~~~~~~fD~v~~~~~l~ 126 (215)
T 2zfu_A 76 CGDCRLASSIR-----NPVHCFDLASL------------DP--------RVTVCDMAQV----PLEDESVDVAVFCLSLM 126 (215)
T ss_dssp CTTCHHHHHCC-----SCEEEEESSCS------------ST--------TEEESCTTSC----SCCTTCEEEEEEESCCC
T ss_pred CcCCHHHHHhh-----ccEEEEeCCCC------------Cc--------eEEEeccccC----CCCCCCEeEEEEehhcc
Confidence 68888876653 46999999988 22 1356666542 12245799998765 2
Q ss_pred -CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 -GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 -gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
..+..++..+.+.|++||.|.++.
T Consensus 127 ~~~~~~~l~~~~~~L~~gG~l~i~~ 151 (215)
T 2zfu_A 127 GTNIRDFLEEANRVLKPGGLLKVAE 151 (215)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCHHHHHHHHHHhCCCCeEEEEEE
Confidence 234577888899999999999854
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.043 Score=50.07 Aligned_cols=79 Identities=8% Similarity=-0.057 Sum_probs=54.4
Q ss_pred ccccHhHHHHhhhCCCCE--EEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHH-HHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAKADF--VMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV-LSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~--V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~-l~~~~~~~~~fDvIdlDP 78 (341)
+|+|..+. . . .+ .+ |+++|+|+..++.+++|++.+ .+++++++|+.++ +......+...|+|+-.|
T Consensus 30 ~G~G~lt~-l-~-~~-~~~~v~avEid~~~~~~a~~~~~~~-------~~v~~i~~D~~~~~~~~~~~~~~~~~~vvsNl 98 (252)
T 1qyr_A 30 PGLAALTE-P-V-GE-RLDQLTVIELDRDLAARLQTHPFLG-------PKLTIYQQDAMTFNFGELAEKMGQPLRVFGNL 98 (252)
T ss_dssp CTTTTTHH-H-H-HT-TCSCEEEECCCHHHHHHHHTCTTTG-------GGEEEECSCGGGCCHHHHHHHHTSCEEEEEEC
T ss_pred CCCcHHHH-h-h-hC-CCCeEEEEECCHHHHHHHHHHhccC-------CceEEEECchhhCCHHHhhcccCCceEEEECC
Confidence 69999999 4 3 24 45 999999999999999987642 3678999999874 322210011346777776
Q ss_pred -CCCCHHHHHHHHH
Q 019408 79 -FGSDSSFLRTVFN 91 (341)
Q Consensus 79 -ygsp~~fld~al~ 91 (341)
|.-+++.+...+.
T Consensus 99 PY~i~~~il~~ll~ 112 (252)
T 1qyr_A 99 PYNISTPLMFHLFS 112 (252)
T ss_dssp CTTTHHHHHHHHHT
T ss_pred CCCccHHHHHHHHh
Confidence 8766777655443
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.67 E-value=0.25 Score=46.54 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=58.0
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe--ccHHHHHHHhhh--cCCcccEEEeCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH--FDANRVLSECYL--KREFFDLIDIDS 78 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~--~DA~~~l~~~~~--~~~~fDvIdlDP 78 (341)
|.|...+.+|+..|++ |++.|.|++..+++++ .+.+ .+.-.. .|..+-+.+... .+..+|+|+ |.
T Consensus 179 ~vG~~a~qla~~~Ga~-Vi~~~~~~~~~~~~~~----lGa~-----~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vi-d~ 247 (352)
T 1e3j_A 179 PIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKN----CGAD-----VTLVVDPAKEEESSIIERIRSAIGDLPNVTI-DC 247 (352)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHH----TTCS-----EEEECCTTTSCHHHHHHHHHHHSSSCCSEEE-EC
T ss_pred HHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHH----hCCC-----EEEcCcccccHHHHHHHHhccccCCCCCEEE-EC
Confidence 5677888888878887 9999999998888764 4542 221112 233333333221 135699874 66
Q ss_pred CCCCHHHHHHHHHhcccCCEEEEE
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~vt 102 (341)
-|.+ ..++.++++++++|-+.+.
T Consensus 248 ~g~~-~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 248 SGNE-KCITIGINITRTGGTLMLV 270 (352)
T ss_dssp SCCH-HHHHHHHHHSCTTCEEEEC
T ss_pred CCCH-HHHHHHHHHHhcCCEEEEE
Confidence 5542 4678899999999998864
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=93.49 E-value=0.11 Score=48.37 Aligned_cols=74 Identities=18% Similarity=0.009 Sum_probs=53.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcC-CcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKR-EFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~-~~fDvIdlDP-y 79 (341)
.|.|.-+...+. .+ .+|+++|.|+.|++..++ ++. .+++++++|...+-..+...+ .++|.|.+|+ |
T Consensus 31 ~G~GGHS~~il~-~~-g~VigiD~Dp~Ai~~A~~-L~~--------~rv~lv~~~f~~l~~~L~~~g~~~vDgIL~DLGv 99 (285)
T 1wg8_A 31 LGGAGHARGILE-RG-GRVIGLDQDPEAVARAKG-LHL--------PGLTVVQGNFRHLKRHLAALGVERVDGILADLGV 99 (285)
T ss_dssp CTTSHHHHHHHH-TT-CEEEEEESCHHHHHHHHH-TCC--------TTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSC
T ss_pred CCCcHHHHHHHH-CC-CEEEEEeCCHHHHHHHHh-hcc--------CCEEEEECCcchHHHHHHHcCCCCcCEEEeCCcc
Confidence 588999988877 43 489999999999999887 642 267888888876633222212 4799999999 4
Q ss_pred CCCHHHHHH
Q 019408 80 GSDSSFLRT 88 (341)
Q Consensus 80 gsp~~fld~ 88 (341)
.| +.+|.
T Consensus 100 SS--~Qld~ 106 (285)
T 1wg8_A 100 SS--FHLDD 106 (285)
T ss_dssp CH--HHHHC
T ss_pred cc--ccccc
Confidence 44 56664
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.24 Score=47.06 Aligned_cols=87 Identities=15% Similarity=0.093 Sum_probs=60.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe----ccHHHHHHHhhhcCCcccEEEeCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH----FDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~----~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+.|...+.+|+..|+.+|++.|.|++-.+.+++ .+.+ .+ +.. .|..+.+.+... + .+|+| +|.
T Consensus 206 ~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~-----~v-i~~~~~~~~~~~~v~~~~~-~-g~Dvv-id~ 272 (376)
T 1e3i_A 206 CVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT-----DC-LNPRELDKPVQDVITELTA-G-GVDYS-LDC 272 (376)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS-----EE-ECGGGCSSCHHHHHHHHHT-S-CBSEE-EES
T ss_pred HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc-----EE-EccccccchHHHHHHHHhC-C-CccEE-EEC
Confidence 457788888888899899999999988887754 4542 21 211 244444544322 3 79987 477
Q ss_pred CCCCHHHHHHHHHhcccC-CEEEEEe
Q 019408 79 FGSDSSFLRTVFNAVKRD-GLLYLTS 103 (341)
Q Consensus 79 ygsp~~fld~al~~v~~g-GlL~vt~ 103 (341)
-|.+ +.++.++++++++ |.+.+..
T Consensus 273 ~G~~-~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 273 AGTA-QTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp SCCH-HHHHHHHHTBCTTTCEEEECC
T ss_pred CCCH-HHHHHHHHHhhcCCCEEEEEC
Confidence 6643 6788999999999 9888643
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.066 Score=50.84 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=44.7
Q ss_pred CccccHhHHHHhhhCCC--CEE-EEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC
Q 019408 1 MCGCGIRSLRYLAEAKA--DFV-MANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID 77 (341)
Q Consensus 1 fagsG~rgir~a~e~ga--~~V-~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD 77 (341)
|||.|.+++-+.. +|. +.| +++|+++.|+++.+.|.... ++++|..++..+... ...+|+|..-
T Consensus 17 FaG~GG~~~G~~~-aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-----------~~~~DI~~~~~~~i~-~~~~Dil~gg 83 (327)
T 3qv2_A 17 FSGIGGLRSSYER-SSININATFIPFDINEIANKIYSKNFKEE-----------VQVKNLDSISIKQIE-SLNCNTWFMS 83 (327)
T ss_dssp TCTTTHHHHHHHH-SSCCCCEEEEEECCCHHHHHHHHHHHCCC-----------CBCCCTTTCCHHHHH-HTCCCEEEEC
T ss_pred CCChhHHHHHHHH-cCCCceEEEEEEECCHHHHHHHHHHCCCC-----------cccCChhhcCHHHhc-cCCCCEEEec
Confidence 7999998877755 674 778 89999999999999998522 223343332211111 1268999999
Q ss_pred C
Q 019408 78 S 78 (341)
Q Consensus 78 P 78 (341)
|
T Consensus 84 p 84 (327)
T 3qv2_A 84 P 84 (327)
T ss_dssp C
T ss_pred C
Confidence 8
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.16 Score=47.95 Aligned_cols=87 Identities=17% Similarity=0.241 Sum_probs=58.9
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...+++|+..|+ +|++.|.|++..+.+++ .+.+ ..+.....|..+.+.+.. +..+|+| +|.-|.
T Consensus 179 ~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~----~~~~~~~~~~~~~~~~~~--~~g~Dvv-id~~g~- 245 (353)
T 4dup_A 179 GIGTTAIQLARAFGA-EVYATAGSTGKCEACER----LGAK----RGINYRSEDFAAVIKAET--GQGVDII-LDMIGA- 245 (353)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS----EEEETTTSCHHHHHHHHH--SSCEEEE-EESCCG-
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCC----EEEeCCchHHHHHHHHHh--CCCceEE-EECCCH-
Confidence 445666777777888 69999999998888875 4442 111112344555555443 5679976 466664
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
+.++.++++++++|-+.+..
T Consensus 246 -~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 246 -AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp -GGHHHHHHTEEEEEEEEECC
T ss_pred -HHHHHHHHHhccCCEEEEEE
Confidence 57788999999999988643
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.97 E-value=0.2 Score=47.65 Aligned_cols=86 Identities=17% Similarity=0.175 Sum_probs=59.7
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEE-e---ccHHHHHHHhhhcCCcccEEEeCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVT-H---FDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~-~---~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+.|...+.+|+..|+.+|++.|.|++..+.+++ .+.+ .+ +. . .|..+.+.+... + .+|+| +|.
T Consensus 203 ~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~-----~v-i~~~~~~~~~~~~~~~~~~-~-g~D~v-id~ 269 (374)
T 1cdo_A 203 AVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT-----DF-VNPNDHSEPISQVLSKMTN-G-GVDFS-LEC 269 (374)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC-----EE-ECGGGCSSCHHHHHHHHHT-S-CBSEE-EEC
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc-----eE-EeccccchhHHHHHHHHhC-C-CCCEE-EEC
Confidence 557788888888899899999999998888764 4542 21 11 1 234444544322 3 79986 466
Q ss_pred CCCCHHHHHHHHHhcccC-CEEEEE
Q 019408 79 FGSDSSFLRTVFNAVKRD-GLLYLT 102 (341)
Q Consensus 79 ygsp~~fld~al~~v~~g-GlL~vt 102 (341)
-|.+ +.++.++++++++ |-+.+.
T Consensus 270 ~g~~-~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 270 VGNV-GVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp SCCH-HHHHHHHHTBCTTTCEEEEC
T ss_pred CCCH-HHHHHHHHHhhcCCcEEEEE
Confidence 5543 6788999999999 988863
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.11 Score=50.04 Aligned_cols=88 Identities=14% Similarity=0.157 Sum_probs=57.7
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH-HHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA-NRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA-~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|..++.+|+..|+.+|+++|.|++..+.+++ .+. +.+.....|. .+.+.+.. .+..||+| +|.-|.
T Consensus 196 ~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa-----~~i~~~~~~~~~~~~~~~~-~g~g~Dvv-id~~g~ 264 (398)
T 2dph_A 196 PVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF-----ETIDLRNSAPLRDQIDQIL-GKPEVDCG-VDAVGF 264 (398)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC-----EEEETTSSSCHHHHHHHHH-SSSCEEEE-EECSCT
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC-----cEEcCCCcchHHHHHHHHh-CCCCCCEE-EECCCC
Confidence 457788888887899899999999998887754 343 1111112232 33333332 23469987 466453
Q ss_pred C-------------HHHHHHHHHhcccCCEEEE
Q 019408 82 D-------------SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 p-------------~~fld~al~~v~~gGlL~v 101 (341)
+ ...++.++++++++|.+.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~ 297 (398)
T 2dph_A 265 EAHGLGDEANTETPNGALNSLFDVVRAGGAIGI 297 (398)
T ss_dssp TCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEEC
T ss_pred ccccccccccccccHHHHHHHHHHHhcCCEEEE
Confidence 2 2468899999999998875
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.12 Score=48.60 Aligned_cols=88 Identities=14% Similarity=0.089 Sum_probs=58.0
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...+.+|+..|+ +|++.|.+++-.+.+++ .+.+ .-+.....|..+.+.+.. .+..+|+| +|.-|.
T Consensus 176 ~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~----~~~~~~~~~~~~~v~~~~-~~~g~D~v-id~~g~- 243 (349)
T 3pi7_A 176 QLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKD----IGAA----HVLNEKAPDFEATLREVM-KAEQPRIF-LDAVTG- 243 (349)
T ss_dssp HHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHH----HTCS----EEEETTSTTHHHHHHHHH-HHHCCCEE-EESSCH-
T ss_pred HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCC----EEEECCcHHHHHHHHHHh-cCCCCcEE-EECCCC-
Confidence 445666777777798 79999999988888764 4542 111111244444444432 23469976 577664
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
+.+..++++++++|-+.+..
T Consensus 244 -~~~~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 244 -PLASAIFNAMPKRARWIIYG 263 (349)
T ss_dssp -HHHHHHHHHSCTTCEEEECC
T ss_pred -hhHHHHHhhhcCCCEEEEEe
Confidence 55688999999999998743
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=92.93 E-value=0.081 Score=52.94 Aligned_cols=70 Identities=11% Similarity=-0.037 Sum_probs=50.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHH-------------hhhc
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSE-------------CYLK 67 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~-------------~~~~ 67 (341)
|||.|.+++-+-. .|.+.|+++|+++.|+++.+.|..... ...++++|+.++... ....
T Consensus 95 FaG~GGlslG~~~-aG~~~v~avE~d~~A~~ty~~N~~~~p-------~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~~ 166 (482)
T 3me5_A 95 FAGIGGIRRGFES-IGGQCVFTSEWNKHAVRTYKANHYCDP-------ATHHFNEDIRDITLSHQEGVSDEAAAEHIRQH 166 (482)
T ss_dssp SCTTSHHHHHHHT-TTEEEEEEECCCHHHHHHHHHHSCCCT-------TTCEEESCTHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred cCCccHHHHHHHH-CCCEEEEEEeCCHHHHHHHHHhcccCC-------CcceeccchhhhhhccccccchhhHHhhhhhc
Confidence 8999988777655 788889999999999999999873211 123567888877511 1111
Q ss_pred CCcccEEEeCC
Q 019408 68 REFFDLIDIDS 78 (341)
Q Consensus 68 ~~~fDvIdlDP 78 (341)
...+|+|.--|
T Consensus 167 ~~~~Dvl~gGp 177 (482)
T 3me5_A 167 IPEHDVLLAGF 177 (482)
T ss_dssp SCCCSEEEEEC
T ss_pred CCCCCEEEecC
Confidence 23589999888
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.22 Score=47.35 Aligned_cols=87 Identities=8% Similarity=0.070 Sum_probs=58.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..+..+|++.|.+++-.+++++ .+.+ .+.-...|..+.+.+. .+..+|+| +|.-|.+
T Consensus 183 ~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad-----~vi~~~~~~~~~v~~~--~~~g~Dvv-id~~g~~ 250 (363)
T 4dvj_A 183 GVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH-----HVIDHSKPLAAEVAAL--GLGAPAFV-FSTTHTD 250 (363)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS-----EEECTTSCHHHHHHTT--CSCCEEEE-EECSCHH
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC-----EEEeCCCCHHHHHHHh--cCCCceEE-EECCCch
Confidence 456677788875355589999999998888765 5542 2211223444444443 34578965 5665542
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
..++.++++++++|-+++.
T Consensus 251 -~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 251 -KHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp -HHHHHHHHHSCTTCEEEEC
T ss_pred -hhHHHHHHHhcCCCEEEEE
Confidence 5778999999999999874
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=92.88 E-value=0.25 Score=46.94 Aligned_cols=87 Identities=10% Similarity=0.046 Sum_probs=59.8
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe---ccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH---FDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~---~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+.|...+.+|+..|+.+|++.|.|++..+++++ .+.+ .+.-.. .|..+.+.+... + .+|+|+ |.-
T Consensus 202 ~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~-----~vi~~~~~~~~~~~~i~~~t~-g-g~Dvvi-d~~ 269 (373)
T 1p0f_A 202 GVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT-----ECLNPKDYDKPIYEVICEKTN-G-GVDYAV-ECA 269 (373)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS-----EEECGGGCSSCHHHHHHHHTT-S-CBSEEE-ECS
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc-----EEEecccccchHHHHHHHHhC-C-CCCEEE-ECC
Confidence 457778888887899899999999998888764 5542 211111 245555544322 3 799774 776
Q ss_pred CCCHHHHHHHHHhcccC-CEEEEE
Q 019408 80 GSDSSFLRTVFNAVKRD-GLLYLT 102 (341)
Q Consensus 80 gsp~~fld~al~~v~~g-GlL~vt 102 (341)
|.+ +.++.++++++++ |-+.+.
T Consensus 270 g~~-~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 270 GRI-ETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp CCH-HHHHHHHHTBCTTTCEEEEC
T ss_pred CCH-HHHHHHHHHHhcCCCEEEEE
Confidence 643 6788999999999 988864
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.23 Score=47.03 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=60.0
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe---ccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH---FDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~---~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+.|...+.+|+..|+.+|+++|.|++..+++++ .+.+ .+.-.. .|..+.+.+... + .+|+| +|.-
T Consensus 201 ~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~-----~vi~~~~~~~~~~~~v~~~~~-~-g~D~v-id~~ 268 (373)
T 2fzw_A 201 GVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT-----ECINPQDFSKPIQEVLIEMTD-G-GVDYS-FECI 268 (373)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS-----EEECGGGCSSCHHHHHHHHTT-S-CBSEE-EECS
T ss_pred HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc-----eEeccccccccHHHHHHHHhC-C-CCCEE-EECC
Confidence 567788888887899889999999998888764 4542 211111 234454544322 3 79986 4776
Q ss_pred CCCHHHHHHHHHhcccC-CEEEEE
Q 019408 80 GSDSSFLRTVFNAVKRD-GLLYLT 102 (341)
Q Consensus 80 gsp~~fld~al~~v~~g-GlL~vt 102 (341)
|.+ +.++.++++++++ |-+.+.
T Consensus 269 g~~-~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 269 GNV-KVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp CCH-HHHHHHHHTBCTTTCEEEEC
T ss_pred CcH-HHHHHHHHhhccCCcEEEEE
Confidence 643 6788999999999 988864
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=92.84 E-value=0.2 Score=47.59 Aligned_cols=86 Identities=16% Similarity=0.138 Sum_probs=59.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe----ccHHHHHHHhhhcCCcccEEEeCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH----FDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~----~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+.|...+.+|+..|+.+|++.|.+++..+.+++ .+.+ .+ +.. .|..+.+.+... + .+|+| +|.
T Consensus 202 ~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~-----~v-i~~~~~~~~~~~~~~~~~~-~-g~D~v-id~ 268 (374)
T 2jhf_A 202 GVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT-----EC-VNPQDYKKPIQEVLTEMSN-G-GVDFS-FEV 268 (374)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS-----EE-ECGGGCSSCHHHHHHHHTT-S-CBSEE-EEC
T ss_pred HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc-----eE-ecccccchhHHHHHHHHhC-C-CCcEE-EEC
Confidence 557778888888899899999999998888754 4542 21 111 234444544322 3 79976 476
Q ss_pred CCCCHHHHHHHHHhcccC-CEEEEE
Q 019408 79 FGSDSSFLRTVFNAVKRD-GLLYLT 102 (341)
Q Consensus 79 ygsp~~fld~al~~v~~g-GlL~vt 102 (341)
-|.+ +.++.++++++++ |.+.+.
T Consensus 269 ~g~~-~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 269 IGRL-DTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp SCCH-HHHHHHHHHBCTTTCEEEEC
T ss_pred CCCH-HHHHHHHHHhhcCCcEEEEe
Confidence 5543 6788999999999 988864
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=0.14 Score=48.19 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=59.5
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccE-EEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRW-VVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~-~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|...+.+|+..|+.+|++.|.+++..+.+++ .+.+ .+ .....|..+.+.+.. .+..+|+| +|.-|.
T Consensus 178 ~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~Ga~-----~~~~~~~~~~~~~v~~~~-~g~g~D~v-id~~g~ 246 (348)
T 2d8a_A 178 PLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----VGAD-----YVINPFEEDVVKEVMDIT-DGNGVDVF-LEFSGA 246 (348)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----HTCS-----EEECTTTSCHHHHHHHHT-TTSCEEEE-EECSCC
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC-----EEECCCCcCHHHHHHHHc-CCCCCCEE-EECCCC
Confidence 467778888887898779999999998887764 3442 21 111234444444432 23468987 466553
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
+ +.++.++++++++|.+.+..
T Consensus 247 ~-~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 247 P-KALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp H-HHHHHHHHHEEEEEEEEECC
T ss_pred H-HHHHHHHHHHhcCCEEEEEc
Confidence 3 67788999999999888643
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.42 Score=44.58 Aligned_cols=90 Identities=11% Similarity=0.027 Sum_probs=60.9
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+..|+..++.+|+++|.+++-.+++++ .+.+ .-+.....|..+.+.+.. .+..+|+++.+.-+ +
T Consensus 174 ~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~----~~i~~~~~~~~~~v~~~t-~g~g~d~~~~~~~~-~ 243 (348)
T 4eez_A 174 GLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGAD----VTINSGDVNPVDEIKKIT-GGLGVQSAIVCAVA-R 243 (348)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCS----EEEEC-CCCHHHHHHHHT-TSSCEEEEEECCSC-H
T ss_pred CccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCe----EEEeCCCCCHHHHhhhhc-CCCCceEEEEeccC-c
Confidence 456677777776677899999999987776654 5542 222233456666665542 34567887777633 2
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
..++.++++++++|-+.+..
T Consensus 244 -~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 244 -IAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp -HHHHHHHHTEEEEEEEEECC
T ss_pred -chhheeheeecCCceEEEEe
Confidence 66788999999999988643
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.32 Score=46.14 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=58.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|.|...+++|+..|+ +|++.|.+++..+.+++ .+.+ ..+.....|..+.+.+.. +..+|+| +|.-|.
T Consensus 174 G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~----~~~~~~~~~~~~~~~~~~--~~g~D~v-id~~g~ 241 (362)
T 2c0c_A 174 GGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS----LGCD----RPINYKTEPVGTVLKQEY--PEGVDVV-YESVGG 241 (362)
T ss_dssp BTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS----EEEETTTSCHHHHHHHHC--TTCEEEE-EECSCT
T ss_pred cHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----cCCc----EEEecCChhHHHHHHHhc--CCCCCEE-EECCCH
Confidence 3566777788887888 79999999988887765 4542 111111234445554432 3468986 466564
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
+.++.++++++++|-+.+.
T Consensus 242 --~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 242 --AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp --HHHHHHHHHEEEEEEEEEC
T ss_pred --HHHHHHHHHHhcCCEEEEE
Confidence 6788999999999988763
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.079 Score=50.15 Aligned_cols=86 Identities=10% Similarity=0.090 Sum_probs=58.8
Q ss_pred cccHhH-HHHh-hhCCCCEEEEeeCCHH---HHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC
Q 019408 3 GCGIRS-LRYL-AEAKADFVMANDGNDA---HRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID 77 (341)
Q Consensus 3 gsG~rg-ir~a-~e~ga~~V~~~Dis~~---A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD 77 (341)
+.|..+ +.+| +..|+++|++.|.+++ -.+++++ .+. +.+.....|..+ +.+. .+ .||+| +|
T Consensus 183 ~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa-----~~v~~~~~~~~~-i~~~--~g-g~Dvv-id 248 (357)
T 2b5w_A 183 SLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDA-----TYVDSRQTPVED-VPDV--YE-QMDFI-YE 248 (357)
T ss_dssp HHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTC-----EEEETTTSCGGG-HHHH--SC-CEEEE-EE
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCC-----cccCCCccCHHH-HHHh--CC-CCCEE-EE
Confidence 567777 8889 8789988999999987 7777654 554 222111224334 4443 24 79987 57
Q ss_pred CCCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 78 SFGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 78 Pygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
.-|.+ ..++.++++++++|.+.+..
T Consensus 249 ~~g~~-~~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 249 ATGFP-KHAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp CSCCH-HHHHHHHHHEEEEEEEEECC
T ss_pred CCCCh-HHHHHHHHHHhcCCEEEEEe
Confidence 76753 57889999999999888643
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.4 Score=44.88 Aligned_cols=85 Identities=13% Similarity=0.224 Sum_probs=57.7
Q ss_pred cccHhHHHHhhhC--CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH-HHHHHHhhhcCCcccEEEeCCC
Q 019408 3 GCGIRSLRYLAEA--KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA-NRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 3 gsG~rgir~a~e~--ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA-~~~l~~~~~~~~~fDvIdlDPy 79 (341)
+.|...+.+|+.. |+ +|++.|.|++-.+.+++ .+.+ . ++..+. .+++.+.. .+..+|+| +|.-
T Consensus 181 ~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~-----~--vi~~~~~~~~~~~~~-~g~g~D~v-id~~ 246 (344)
T 2h6e_A 181 GLAVYTIQILKALMKNI-TIVGISRSKKHRDFALE----LGAD-----Y--VSEMKDAESLINKLT-DGLGASIA-IDLV 246 (344)
T ss_dssp HHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHH----HTCS-----E--EECHHHHHHHHHHHH-TTCCEEEE-EESS
T ss_pred HHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHH----hCCC-----E--EeccccchHHHHHhh-cCCCccEE-EECC
Confidence 4577888888877 88 59999999998888765 4542 2 232211 22333332 24479987 4666
Q ss_pred CCCHHHHHHHHHhcccCCEEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt 102 (341)
|.+ ..++.++++++++|-+.+.
T Consensus 247 g~~-~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 247 GTE-ETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp CCH-HHHHHHHHHEEEEEEEEEC
T ss_pred CCh-HHHHHHHHHhhcCCEEEEe
Confidence 642 4788999999999988864
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=91.88 E-value=0.29 Score=45.86 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=58.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|.|...+..|+..|+ +|++.|.|++-.+.+++ .+.+ ..+.....|..+.+.+.. ..+|+| +|.-|.
T Consensus 174 G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~----~~~d~~~~~~~~~~~~~~---~~~d~v-id~~g~ 240 (339)
T 1rjw_A 174 GGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD----LVVNPLKEDAAKFMKEKV---GGVHAA-VVTAVS 240 (339)
T ss_dssp STTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS----EEECTTTSCHHHHHHHHH---SSEEEE-EESSCC
T ss_pred CHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CCCC----EEecCCCccHHHHHHHHh---CCCCEE-EECCCC
Confidence 3567888888888888 89999999998887764 4441 111111234444444332 368977 466554
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
+ +.++.++++++++|.+.+..
T Consensus 241 ~-~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 241 K-PAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp H-HHHHHHHHHEEEEEEEEECC
T ss_pred H-HHHHHHHHHhhcCCEEEEec
Confidence 3 67788999999999888643
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.17 Score=47.95 Aligned_cols=91 Identities=12% Similarity=0.026 Sum_probs=63.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--y 79 (341)
+|+|..+++.++...--+++..|. |..++..+++++..+. +++++..+|.++- ....+|+|++== .
T Consensus 188 gG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~-----~rv~~~~gD~~~~------~~~~~D~~~~~~vlh 255 (353)
T 4a6d_A 188 GGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEE-----EQIDFQEGDFFKD------PLPEADLYILARVLH 255 (353)
T ss_dssp CTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--C-----CSEEEEESCTTTS------CCCCCSEEEEESSGG
T ss_pred CCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhccc-----CceeeecCccccC------CCCCceEEEeeeecc
Confidence 689999999998633346788887 8899999988764433 5789999997631 223579887632 1
Q ss_pred CCC----HHHHHHHHHhcccCCEEEEEec
Q 019408 80 GSD----SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gsp----~~fld~al~~v~~gGlL~vt~T 104 (341)
-.+ ...|..+.+++++||.|.|...
T Consensus 256 ~~~d~~~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 256 DWADGKCSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp GSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred cCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 112 3457778889999998887543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.65 E-value=0.3 Score=45.84 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=57.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...+.+|+..|+ +|++.|.+++..+.+++ .+.+ .+.-...|..+.+.+.. .+..+|+| +|.-|.
T Consensus 171 ~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~-----~v~~~~~~~~~~v~~~~-~~~g~Dvv-id~~g~- 237 (342)
T 4eye_A 171 GIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKS----VGAD-----IVLPLEEGWAKAVREAT-GGAGVDMV-VDPIGG- 237 (342)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS-----EEEESSTTHHHHHHHHT-TTSCEEEE-EESCC--
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCc-----EEecCchhHHHHHHHHh-CCCCceEE-EECCch-
Confidence 456677788887888 79999999988887765 3542 22212244444444432 24469977 466565
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
+.++.++++++++|.+.+.
T Consensus 238 -~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 238 -PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp --CHHHHHHTEEEEEEEEEC
T ss_pred -hHHHHHHHhhcCCCEEEEE
Confidence 5678899999999999864
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=91.42 E-value=0.059 Score=45.22 Aligned_cols=71 Identities=14% Similarity=0.094 Sum_probs=50.4
Q ss_pred EeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe-CC--C--CCCHHHHHHHHHhcccC
Q 019408 22 ANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI-DS--F--GSDSSFLRTVFNAVKRD 96 (341)
Q Consensus 22 ~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl-DP--y--gsp~~fld~al~~v~~g 96 (341)
.+|+|+..++.+++++.. .+++.++|+.++... ......||+|+. .- + ..+..++..+.+.|++|
T Consensus 25 ~vD~s~~ml~~a~~~~~~---------~~~~~~~d~~~~~~~-~~~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~Lkpg 94 (176)
T 2ld4_A 25 PVEALKGLVDKLQALTGN---------EGRVSVENIKQLLQS-AHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPG 94 (176)
T ss_dssp CHHHHHHHHHHHHHHTTT---------TSEEEEEEGGGGGGG-CCCSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEE
T ss_pred eeeCCHHHHHHHHHhccc---------CcEEEEechhcCccc-cCCCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCC
Confidence 389999999999987642 246678888754210 013467999987 32 1 23467888999999999
Q ss_pred CEEEEE
Q 019408 97 GLLYLT 102 (341)
Q Consensus 97 GlL~vt 102 (341)
|.|.+.
T Consensus 95 G~l~~~ 100 (176)
T 2ld4_A 95 GCLFLK 100 (176)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999984
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=91.39 E-value=0.1 Score=49.22 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=55.6
Q ss_pred EEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC-------HHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhc
Q 019408 50 WVVTHFDANRVLSECYLKREFFDLIDIDSFGSD-------SSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYG 122 (341)
Q Consensus 50 ~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp-------~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg 122 (341)
.++..+||.+.|.+.. ..+||+|++|+|+.. .+++....+++++||.|. |.| +-
T Consensus 168 L~l~~GDa~~~l~~l~--~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~la-TYt-----aa----------- 228 (308)
T 3vyw_A 168 LKVLLGDARKRIKEVE--NFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWV-SYS-----SS----------- 228 (308)
T ss_dssp EEEEESCHHHHGGGCC--SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEE-ESC-----CC-----------
T ss_pred EEEEechHHHHHhhhc--ccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEE-EEe-----Cc-----------
Confidence 4578999999987652 347999999999742 257777788999999998 464 21
Q ss_pred cccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEecc
Q 019408 123 AYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYY 161 (341)
Q Consensus 123 ~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s~~ 161 (341)
+.|.|.....|..|+-+--+.
T Consensus 229 ------------------g~VRR~L~~aGF~V~k~~G~g 249 (308)
T 3vyw_A 229 ------------------LSVRKSLLTLGFKVGSSREIG 249 (308)
T ss_dssp ------------------HHHHHHHHHTTCEEEEEECC-
T ss_pred ------------------HHHHHHHHHCCCEEEecCCCC
Confidence 466778888888887664443
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=0.12 Score=48.49 Aligned_cols=87 Identities=11% Similarity=0.073 Sum_probs=58.9
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccE-EEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRW-VVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~-~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
|.|...+.+|+..|+.+|++.|.+++-.+.+++- . +.+ .....|..+.+.+.. +..+|+| +|.-|.
T Consensus 175 ~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-----a-----~~v~~~~~~~~~~~~~~~~--~~g~D~v-id~~g~ 241 (343)
T 2dq4_A 175 PIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-----A-----DRLVNPLEEDLLEVVRRVT--GSGVEVL-LEFSGN 241 (343)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-----C-----SEEECTTTSCHHHHHHHHH--SSCEEEE-EECSCC
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-----H-----HhccCcCccCHHHHHHHhc--CCCCCEE-EECCCC
Confidence 5677888888888987799999999888777552 2 111 111234444444432 4579987 466564
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
+ +.++.++++++++|.+.+..
T Consensus 242 ~-~~~~~~~~~l~~~G~iv~~g 262 (343)
T 2dq4_A 242 E-AAIHQGLMALIPGGEARILG 262 (343)
T ss_dssp H-HHHHHHHHHEEEEEEEEECC
T ss_pred H-HHHHHHHHHHhcCCEEEEEe
Confidence 3 66788999999999888643
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=91.27 E-value=0.04 Score=51.70 Aligned_cols=84 Identities=18% Similarity=0.062 Sum_probs=53.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeC----CHHHHHHHHHHHHHcCCCCCCCccEEEEec-cHHHHHHHhhhcCCcccEEEe
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDG----NDAHRRVILGNLKSIERGSGDEKRWVVTHF-DANRVLSECYLKREFFDLIDI 76 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Di----s~~A~~~i~~N~~~n~~~~~~~~~~~v~~~-DA~~~l~~~~~~~~~fDvIdl 76 (341)
||+|..+..++. . .+|+++|+ ++..++.+. . ... ....+++.++ |+..+ ..++||+|+.
T Consensus 91 cG~G~~s~~la~-~--~~V~gvD~~~~~~~~~~~~~~--~--~~~---~~~~v~~~~~~D~~~l------~~~~fD~V~s 154 (305)
T 2p41_A 91 CGRGGWSYYCGG-L--KNVREVKGLTKGGPGHEEPIP--M--STY---GWNLVRLQSGVDVFFI------PPERCDTLLC 154 (305)
T ss_dssp CTTSHHHHHHHT-S--TTEEEEEEECCCSTTSCCCCC--C--CST---TGGGEEEECSCCTTTS------CCCCCSEEEE
T ss_pred CCCCHHHHHHHh-c--CCEEEEeccccCchhHHHHHH--h--hhc---CCCCeEEEeccccccC------CcCCCCEEEE
Confidence 799999988887 4 36999999 553221110 0 111 0135777888 87643 2358999999
Q ss_pred CC-C--CCCH-------HHHHHHHHhcccCCEEEE
Q 019408 77 DS-F--GSDS-------SFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 77 DP-y--gsp~-------~fld~al~~v~~gGlL~v 101 (341)
|- + |... ..+..+.+.|++||.+++
T Consensus 155 d~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~ 189 (305)
T 2p41_A 155 DIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV 189 (305)
T ss_dssp CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 95 2 2210 234556688999998887
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=91.19 E-value=0.48 Score=40.41 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=53.0
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCCH
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSDS 83 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp~ 83 (341)
.|...++.++..|+ +|++.|.+++..+.+++ .+.. ..+.....|..+.+.+... +..+|+|+ |--|.
T Consensus 51 iG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~----~~~d~~~~~~~~~~~~~~~-~~~~D~vi-~~~g~-- 117 (198)
T 1pqw_A 51 VGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE----YVGDSRSVDFADEILELTD-GYGVDVVL-NSLAG-- 117 (198)
T ss_dssp HHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS----EEEETTCSTHHHHHHHHTT-TCCEEEEE-ECCCT--
T ss_pred HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC----EEeeCCcHHHHHHHHHHhC-CCCCeEEE-ECCch--
Confidence 34444555665687 69999999987776543 3431 1111122344444443322 33699887 44352
Q ss_pred HHHHHHHHhcccCCEEEEEe
Q 019408 84 SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 84 ~fld~al~~v~~gGlL~vt~ 103 (341)
+.++.+++.++++|.+.+..
T Consensus 118 ~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 118 EAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp HHHHHHHHTEEEEEEEEECS
T ss_pred HHHHHHHHHhccCCEEEEEc
Confidence 67889999999999888643
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=91.18 E-value=0.27 Score=46.54 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=59.0
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe-ccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH-FDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~-~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|...+.+|+..|+ +|++.|.+++-.+.+++ .+.+ .+.-.. .|..+.+.+.. .+..+|+| +|.-|.
T Consensus 200 ~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~-----~vi~~~~~~~~~~v~~~~-~g~g~D~v-id~~g~ 267 (363)
T 3uog_A 200 GVALFGLQIAKATGA-EVIVTSSSREKLDRAFA----LGAD-----HGINRLEEDWVERVYALT-GDRGADHI-LEIAGG 267 (363)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----HTCS-----EEEETTTSCHHHHHHHHH-TTCCEEEE-EEETTS
T ss_pred HHHHHHHHHHHHcCC-EEEEEecCchhHHHHHH----cCCC-----EEEcCCcccHHHHHHHHh-CCCCceEE-EECCCh
Confidence 457777888887888 79999999998888654 4542 211111 34444454432 34579976 466553
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
+.++.++++++++|-+.+..
T Consensus 268 --~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 268 --AGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp --SCHHHHHHHEEEEEEEEEEC
T ss_pred --HHHHHHHHHhhcCCEEEEEe
Confidence 56788999999999998754
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=90.94 E-value=0.11 Score=48.20 Aligned_cols=49 Identities=14% Similarity=-0.050 Sum_probs=40.6
Q ss_pred ccccHhHHHHhhhCCCC---EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHH
Q 019408 2 CGCGIRSLRYLAEAKAD---FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRV 60 (341)
Q Consensus 2 agsG~rgir~a~e~ga~---~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~ 60 (341)
+|+|..++..+.. +.. +|+++|+|++.++.+++|. . .+++++++|+.++
T Consensus 51 ~G~G~lt~~La~~-~~~~~~~V~avDid~~~l~~a~~~~----~-----~~v~~i~~D~~~~ 102 (279)
T 3uzu_A 51 PGLGALTGPVIAR-LATPGSPLHAVELDRDLIGRLEQRF----G-----ELLELHAGDALTF 102 (279)
T ss_dssp CTTSTTHHHHHHH-HCBTTBCEEEEECCHHHHHHHHHHH----G-----GGEEEEESCGGGC
T ss_pred cccHHHHHHHHHh-CCCcCCeEEEEECCHHHHHHHHHhc----C-----CCcEEEECChhcC
Confidence 7999999999874 433 3999999999999999994 1 3678999999875
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=90.90 E-value=0.43 Score=44.25 Aligned_cols=90 Identities=16% Similarity=0.092 Sum_probs=57.0
Q ss_pred HHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhh--cCCccc-----EEEeCC--
Q 019408 9 LRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYL--KREFFD-----LIDIDS-- 78 (341)
Q Consensus 9 ir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~--~~~~fD-----vIdlDP-- 78 (341)
.+.+.+ ..-.+|+.+|+|+..++..++++..+.. ..+++++.|+.+.-..+.. ....|| .|.+--
T Consensus 96 ~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~-----~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avL 170 (277)
T 3giw_A 96 HEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE-----GRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIV 170 (277)
T ss_dssp HHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS-----SEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCG
T ss_pred HHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC-----CcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhH
Confidence 444443 1234799999999999999998864322 3678999999875221100 012355 243332
Q ss_pred -CCC----CHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGS----DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygs----p~~fld~al~~v~~gGlL~vt~ 103 (341)
|-. |...+....+.|++||+|.++.
T Consensus 171 H~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 171 HFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp GGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred hcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 221 2356777888999999999853
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=90.48 E-value=0.54 Score=43.70 Aligned_cols=87 Identities=15% Similarity=0.123 Sum_probs=58.0
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...+++++..|+ +|++.|.+++..+.+.+. .+.. ..+.....|..+.+.+.. +..+|+| +|.-|.
T Consensus 161 ~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~---~g~~----~~~~~~~~~~~~~~~~~~--~~~~d~v-i~~~g~- 228 (336)
T 4b7c_A 161 AVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEE---LGFD----GAIDYKNEDLAAGLKREC--PKGIDVF-FDNVGG- 228 (336)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT---TCCS----EEEETTTSCHHHHHHHHC--TTCEEEE-EESSCH-
T ss_pred HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH---cCCC----EEEECCCHHHHHHHHHhc--CCCceEE-EECCCc-
Confidence 456667777777888 899999999888877332 3431 111122345555555443 3479976 566553
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
+.++.++++++++|-+.+.
T Consensus 229 -~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 229 -EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp -HHHHHHHTTEEEEEEEEEC
T ss_pred -chHHHHHHHHhhCCEEEEE
Confidence 6788999999999998863
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=90.34 E-value=0.57 Score=43.56 Aligned_cols=88 Identities=15% Similarity=0.159 Sum_probs=56.7
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...++.++..|+ +|++.|.+++..+.+++ .+.+ ..+.....|..+.+.+.. .+..+|+|+ |.-|.
T Consensus 157 giG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~----~g~~----~~~d~~~~~~~~~i~~~~-~~~~~d~vi-~~~g~- 224 (333)
T 1wly_A 157 GMGHIMVPWARHLGA-TVIGTVSTEEKAETARK----LGCH----HTINYSTQDFAEVVREIT-GGKGVDVVY-DSIGK- 224 (333)
T ss_dssp TTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS----EEEETTTSCHHHHHHHHH-TTCCEEEEE-ECSCT-
T ss_pred HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCC----EEEECCCHHHHHHHHHHh-CCCCCeEEE-ECCcH-
Confidence 456666777777787 79999999988887765 3431 111112234444444332 234689875 66554
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
+.++.++++++++|.+.+..
T Consensus 225 -~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 225 -DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp -TTHHHHHHTEEEEEEEEECC
T ss_pred -HHHHHHHHhhccCCEEEEEe
Confidence 66788999999999887643
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=89.81 E-value=0.73 Score=42.82 Aligned_cols=88 Identities=18% Similarity=0.159 Sum_probs=58.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...+.+++..|+ +|++.|.+++-.+.+++ .+.+ ..+.....|..+.+.+.. .+..+|+| +|.-|.
T Consensus 160 ~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~----~~~~~~~~~~~~~~~~~~-~~~g~D~v-id~~g~- 227 (334)
T 3qwb_A 160 GVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE----YGAE----YLINASKEDILRQVLKFT-NGKGVDAS-FDSVGK- 227 (334)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS----EEEETTTSCHHHHHHHHT-TTSCEEEE-EECCGG-
T ss_pred HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc----EEEeCCCchHHHHHHHHh-CCCCceEE-EECCCh-
Confidence 455666777777788 79999999998887765 4441 111112245555554432 24579976 466554
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
+.++.++++++++|.+.+..
T Consensus 228 -~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 228 -DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp -GGHHHHHHHEEEEEEEEECC
T ss_pred -HHHHHHHHHhccCCEEEEEc
Confidence 67888999999999988743
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.74 E-value=0.62 Score=43.55 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=57.1
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...++.++..|+ +|++.|.+++..+.+++ .+.. ..+.....|..+.+.+.. .+..+|+|+ |.-| +
T Consensus 178 ~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~----~ga~----~~~d~~~~~~~~~~~~~~-~~~~~d~vi-~~~g-~ 245 (343)
T 2eih_A 178 GVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKA----LGAD----ETVNYTHPDWPKEVRRLT-GGKGADKVV-DHTG-A 245 (343)
T ss_dssp TTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS----EEEETTSTTHHHHHHHHT-TTTCEEEEE-ESSC-S
T ss_pred hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC----EEEcCCcccHHHHHHHHh-CCCCceEEE-ECCC-H
Confidence 566777788877788 79999999998888764 3441 111111234444444332 234689774 6655 2
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
+.++.++++++++|-+.+..
T Consensus 246 -~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 246 -LYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp -SSHHHHHHHEEEEEEEEESS
T ss_pred -HHHHHHHHhhccCCEEEEEe
Confidence 56788999999999887643
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=89.66 E-value=0.46 Score=44.44 Aligned_cols=88 Identities=14% Similarity=0.035 Sum_probs=58.5
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...+.+|+..|+ +|++.|.+++..+.+++ .+.+ ..+.....|..+.+.+.. .+..+|+| +|.-|.
T Consensus 156 ~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lga~----~~~~~~~~~~~~~~~~~~-~~~g~Dvv-id~~g~- 223 (340)
T 3gms_A 156 AIGHLFAQLSQILNF-RLIAVTRNNKHTEELLR----LGAA----YVIDTSTAPLYETVMELT-NGIGADAA-IDSIGG- 223 (340)
T ss_dssp HHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCS----EEEETTTSCHHHHHHHHT-TTSCEEEE-EESSCH-
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----CCCc----EEEeCCcccHHHHHHHHh-CCCCCcEE-EECCCC-
Confidence 567788888887888 79999999988888775 3442 111112244444444432 34579977 466554
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
+....++++++++|.+.+..
T Consensus 224 -~~~~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 224 -PDGNELAFSLRPNGHFLTIG 243 (340)
T ss_dssp -HHHHHHHHTEEEEEEEEECC
T ss_pred -hhHHHHHHHhcCCCEEEEEe
Confidence 45566779999999998743
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=89.61 E-value=0.6 Score=43.30 Aligned_cols=88 Identities=14% Similarity=0.125 Sum_probs=58.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...+.+++..|+ +|++.|.+++-.+.+++ .+.+ ..+.....|..+.+.+.. .+..+|+| +|.-|.
T Consensus 152 ~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~----~~~~~~~~~~~~~~~~~~-~~~g~Dvv-id~~g~- 219 (325)
T 3jyn_A 152 GVGSLACQWAKALGA-KLIGTVSSPEKAAHAKA----LGAW----ETIDYSHEDVAKRVLELT-DGKKCPVV-YDGVGQ- 219 (325)
T ss_dssp HHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS----EEEETTTSCHHHHHHHHT-TTCCEEEE-EESSCG-
T ss_pred HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCC----EEEeCCCccHHHHHHHHh-CCCCceEE-EECCCh-
Confidence 446666677776788 79999999998888764 3442 111112344444444432 34578976 566564
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
+.+..++++++++|-+.+..
T Consensus 220 -~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 220 -DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp -GGHHHHHTTEEEEEEEEECC
T ss_pred -HHHHHHHHHhcCCCEEEEEe
Confidence 66788999999999998754
|
| >3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=89.08 E-value=4.3 Score=32.50 Aligned_cols=55 Identities=11% Similarity=-0.004 Sum_probs=40.5
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
-+|..+|-++...+.+++-++..++ .+.....|..+.+.........+|+|++|-
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~~g~------~v~~~~~~~~~al~~l~~~~~~~dliilD~ 91 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTSEGF------NIIDTAADGEEAVIKYKNHYPNIDIVTLXI 91 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC------EEEEEESSHHHHHHHHHHHGGGCCEEEECS
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCC------eEEEEECCHHHHHHHHHhcCCCCCEEEEec
Confidence 3799999999999999999987765 232245666666665543322699999997
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.07 E-value=0.36 Score=45.92 Aligned_cols=83 Identities=22% Similarity=0.306 Sum_probs=55.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|++ |++.|.|++-.+.+++ .+.+ .+ +...+. +++.+.. ..+|+| +|.-|.+
T Consensus 205 ~vG~~aiqlak~~Ga~-Vi~~~~~~~~~~~a~~----lGa~-----~v-i~~~~~-~~~~~~~---~g~Dvv-id~~g~~ 268 (369)
T 1uuf_A 205 GLGHMGIKLAHAMGAH-VVAFTTSEAKREAAKA----LGAD-----EV-VNSRNA-DEMAAHL---KSFDFI-LNTVAAP 268 (369)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHH----HTCS-----EE-EETTCH-HHHHTTT---TCEEEE-EECCSSC
T ss_pred HHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHH----cCCc-----EE-eccccH-HHHHHhh---cCCCEE-EECCCCH
Confidence 4577888888878885 9999999988888765 4542 21 222222 3333322 368987 4665543
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
..++.++++++++|.+.+.
T Consensus 269 -~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 269 -HNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp -CCHHHHHTTEEEEEEEEEC
T ss_pred -HHHHHHHHHhccCCEEEEe
Confidence 3567899999999988763
|
| >3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} | Back alignment and structure |
|---|
Probab=88.85 E-value=5.1 Score=31.40 Aligned_cols=54 Identities=9% Similarity=0.036 Sum_probs=37.0
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+|..+|-++...+.++..++..... -.+.....+..+.+.... ...+|+|++|-
T Consensus 4 ~ILivdd~~~~~~~l~~~L~~~~~~----~~~~~~~~~~~~al~~~~--~~~~dlvllD~ 57 (141)
T 3cu5_A 4 RILIVDDEKLTRDGLIANINWKALS----FDQIDQADDGINAIQIAL--KHPPNVLLTDV 57 (141)
T ss_dssp EEEEECSCHHHHHHHHHHCCGGGSC----CSEEEEESSHHHHHHHHT--TSCCSEEEEES
T ss_pred eEEEEeCCHHHHHHHHHHHHHccCC----cEEeeecccHHHHHHHHh--cCCCCEEEEeC
Confidence 6899999999999998877642221 122225667777766543 34699999996
|
| >3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=88.83 E-value=7.4 Score=30.67 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=40.0
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhh-------hcCCcccEEEeCC
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECY-------LKREFFDLIDIDS 78 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~-------~~~~~fDvIdlDP 78 (341)
-+|..+|-++...+.+++-++..+.. ..+ ....|..+.+..+. .....+|+|++|-
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~----~~v-~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~ 67 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVN----NEI-IAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDL 67 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCC----CCE-EEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCc----ceE-EEeCCHHHHHHHHhccccccccccCCCCEEEEeC
Confidence 46899999999999999999987752 123 24456666665442 1245799999996
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.81 E-value=0.72 Score=42.67 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=55.1
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...++.++..|+ +|++.|.+++..+.+++ .+.. ..+.....|..+.+.+.. .+..+|+|+ |.-|
T Consensus 152 giG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~~-~~~~~D~vi-~~~g-- 218 (327)
T 1qor_A 152 GVGLIACQWAKALGA-KLIGTVGTAQKAQSALK----AGAW----QVINYREEDLVERLKEIT-GGKKVRVVY-DSVG-- 218 (327)
T ss_dssp HHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS----EEEETTTSCHHHHHHHHT-TTCCEEEEE-ECSC--
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC----EEEECCCccHHHHHHHHh-CCCCceEEE-ECCc--
Confidence 345555666666787 79999999988887765 3431 111111234444444332 234689874 5545
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
.+.++.++++++++|-+.+..
T Consensus 219 ~~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 219 RDTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp GGGHHHHHHTEEEEEEEEECC
T ss_pred hHHHHHHHHHhcCCCEEEEEe
Confidence 367788999999999887643
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=88.61 E-value=0.78 Score=43.17 Aligned_cols=88 Identities=18% Similarity=0.237 Sum_probs=55.0
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...++.++..|+ +|++.|.+++..+.+++ .+.+ ..+.....|..+.+.+.. .+..+|+| +|.-|.
T Consensus 174 giG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~~-~~~~~d~v-i~~~G~- 241 (354)
T 2j8z_A 174 GVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEK----LGAA----AGFNYKKEDFSEATLKFT-KGAGVNLI-LDCIGG- 241 (354)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----HTCS----EEEETTTSCHHHHHHHHT-TTSCEEEE-EESSCG-
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCc----EEEecCChHHHHHHHHHh-cCCCceEE-EECCCc-
Confidence 345555666776787 79999999988887743 3431 111111234444444332 23468987 466564
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
+.+..++++++++|.+.+..
T Consensus 242 -~~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 242 -SYWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp -GGHHHHHHHEEEEEEEEECC
T ss_pred -hHHHHHHHhccCCCEEEEEe
Confidence 46778899999999888643
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=88.29 E-value=0.29 Score=45.27 Aligned_cols=84 Identities=17% Similarity=0.282 Sum_probs=57.1
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+ +|++.|.|++-.+.+++ .+.+ . .+...|... +.. ..+..+|+| +|.-|.
T Consensus 158 ~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~-----~-vi~~~~~~~-~~~--~~~~~~d~v-~d~~g~- 221 (324)
T 3nx4_A 158 GVGSTAVALLHKLGY-QVAAVSGRESTHGYLKS----LGAN-----R-ILSRDEFAE-SRP--LEKQLWAGA-IDTVGD- 221 (324)
T ss_dssp HHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHH----HTCS-----E-EEEGGGSSC-CCS--SCCCCEEEE-EESSCH-
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCC-----E-EEecCCHHH-HHh--hcCCCccEE-EECCCc-
Confidence 567777888887898 79999999998888865 4542 2 122222111 111 123468964 677664
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
+.++.++++++++|-+.+..
T Consensus 222 -~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 222 -KVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp -HHHHHHHHTEEEEEEEEECC
T ss_pred -HHHHHHHHHHhcCCEEEEEe
Confidence 68899999999999998743
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=88.08 E-value=1.1 Score=41.94 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=56.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...++.++..|+.+|++.|.+++..+.+++. .+.. ..+.....|..+.+.+... + .+|+|+ |.-|.
T Consensus 172 giG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~----~~~d~~~~~~~~~~~~~~~-~-~~d~vi-~~~G~- 240 (357)
T 2zb4_A 172 ACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD----AAINYKKDNVAEQLRESCP-A-GVDVYF-DNVGG- 240 (357)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS----EEEETTTSCHHHHHHHHCT-T-CEEEEE-ESCCH-
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc----eEEecCchHHHHHHHHhcC-C-CCCEEE-ECCCH-
Confidence 4455556667767887899999999887777653 2331 1111112344444444322 2 688764 55553
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
..++.++++++++|-+.+.
T Consensus 241 -~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 241 -NISDTVISQMNENSHIILC 259 (357)
T ss_dssp -HHHHHHHHTEEEEEEEEEC
T ss_pred -HHHHHHHHHhccCcEEEEE
Confidence 7788999999999988863
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=88.00 E-value=0.24 Score=46.55 Aligned_cols=83 Identities=12% Similarity=0.052 Sum_probs=58.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
+|+|..++..+....-.+++.+|+ +..++.+++ . ..+++..+|+++- . + .||+|++--
T Consensus 197 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-----~~v~~~~~d~~~~-----~-p-~~D~v~~~~~lh 257 (352)
T 1fp2_A 197 GGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------S-----NNLTYVGGDMFTS-----I-P-NADAVLLKYILH 257 (352)
T ss_dssp CTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------B-----TTEEEEECCTTTC-----C-C-CCSEEEEESCGG
T ss_pred CCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------C-----CCcEEEeccccCC-----C-C-CccEEEeehhhc
Confidence 699999999987532347999999 888776554 1 1377888998641 1 2 399887643
Q ss_pred -CCCCH--HHHHHHHHhccc---CCEEEEEe
Q 019408 79 -FGSDS--SFLRTVFNAVKR---DGLLYLTS 103 (341)
Q Consensus 79 -ygsp~--~fld~al~~v~~---gGlL~vt~ 103 (341)
+..+. .++..+.++|++ ||.|.+..
T Consensus 258 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 258 NWTDKDCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 22122 567788889999 99998754
|
| >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=87.55 E-value=5.1 Score=31.15 Aligned_cols=54 Identities=13% Similarity=-0.037 Sum_probs=39.2
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
.+|..+|-++...+.+++-++..+. .+ ....+..+.+.........+|+|++|-
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~------~v-~~~~~~~~a~~~~~~~~~~~dlvi~d~ 57 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGN------EV-LTASSSTEGLRIFTENCNSIDVVITDM 57 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC------EE-EEESSHHHHHHHHHHTTTTCCEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCc------eE-EEeCCHHHHHHHHHhCCCCCCEEEEeC
Confidence 4689999999999999999987664 22 244555555554432245799999996
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=87.44 E-value=0.31 Score=46.26 Aligned_cols=83 Identities=11% Similarity=-0.009 Sum_probs=58.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
+|+|...+..+....-.+++.+|+ +..++.+++ . ..+++..+|+++- . + .||+|++--
T Consensus 218 ~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~-----~~v~~~~~d~~~~-----~-~-~~D~v~~~~~lh 278 (372)
T 1fp1_D 218 GGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------L-----SGIEHVGGDMFAS-----V-P-QGDAMILKAVCH 278 (372)
T ss_dssp CTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------C-----TTEEEEECCTTTC-----C-C-CEEEEEEESSGG
T ss_pred CCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------c-----CCCEEEeCCcccC-----C-C-CCCEEEEecccc
Confidence 699999999987532347889999 888766543 1 2477889998741 1 2 299887743
Q ss_pred -CCCCH--HHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDS--SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~--~fld~al~~v~~gGlL~vt~ 103 (341)
+..+. .++..+.+.|++||.|.+..
T Consensus 279 ~~~d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 279 NWSDEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 12122 56778889999999999753
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=87.27 E-value=1.5 Score=40.55 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=55.2
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe-ccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH-FDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~-~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
|.|...++.++..|+ +|++.|.+++..+.+++ .+.. ..+.... .|..+.+.+... ..+|+|+ |.-|.
T Consensus 157 giG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~----~~~d~~~~~~~~~~~~~~~~--~~~d~vi-~~~g~ 224 (333)
T 1v3u_A 157 AVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGFD----AAFNYKTVNSLEEALKKASP--DGYDCYF-DNVGG 224 (333)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS----EEEETTSCSCHHHHHHHHCT--TCEEEEE-ESSCH
T ss_pred cHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCc----EEEecCCHHHHHHHHHHHhC--CCCeEEE-ECCCh
Confidence 445555666766788 79999999988777633 3431 1111122 455555554432 3689874 55453
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
+.++.++++++++|.+.+.
T Consensus 225 --~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 225 --EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp --HHHHHHHTTEEEEEEEEEC
T ss_pred --HHHHHHHHHHhcCCEEEEE
Confidence 5688999999999988763
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=87.19 E-value=1.3 Score=41.43 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=57.2
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+ +|++. .+++..+.+++ .+.+ .+. ...|..+.+.+.. .+..+|+| +|.-|.
T Consensus 162 ~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~----lGa~-----~i~-~~~~~~~~~~~~~-~~~g~D~v-id~~g~- 226 (343)
T 3gaz_A 162 GVGHVAIQIALARGA-RVFAT-ARGSDLEYVRD----LGAT-----PID-ASREPEDYAAEHT-AGQGFDLV-YDTLGG- 226 (343)
T ss_dssp HHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHH----HTSE-----EEE-TTSCHHHHHHHHH-TTSCEEEE-EESSCT-
T ss_pred HHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHH----cCCC-----Eec-cCCCHHHHHHHHh-cCCCceEE-EECCCc-
Confidence 456677788887888 68888 88887777654 4542 222 3345555554432 34579965 567664
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
+.++.++++++++|-+.+.
T Consensus 227 -~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 227 -PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp -HHHHHHHHHEEEEEEEEES
T ss_pred -HHHHHHHHHHhcCCeEEEE
Confidence 7888999999999998863
|
| >3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} | Back alignment and structure |
|---|
Probab=86.72 E-value=9.5 Score=29.59 Aligned_cols=79 Identities=11% Similarity=0.096 Sum_probs=50.6
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC---CC-CHHHHHHHHHhc
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF---GS-DSSFLRTVFNAV 93 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy---gs-p~~fld~al~~v 93 (341)
.+|..+|-++...+.+++-++..+. .+. ...|..+.+..... +..+|+|++|-. |. ...++.. ++..
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~------~v~-~~~~~~~a~~~l~~-~~~~dlvi~D~~l~~~~~g~~~~~~-l~~~ 76 (140)
T 3h5i_A 6 KKILIVEDSKFQAKTIANILNKYGY------TVE-IALTGEAAVEKVSG-GWYPDLILMDIELGEGMDGVQTALA-IQQI 76 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC------EEE-EESSHHHHHHHHHT-TCCCSEEEEESSCSSSCCHHHHHHH-HHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCC------EEE-EecChHHHHHHHhc-CCCCCEEEEeccCCCCCCHHHHHHH-HHhC
Confidence 4799999999999999999987765 232 45566666655422 357999999962 22 2233333 3333
Q ss_pred ccCCEEEEEecC
Q 019408 94 KRDGLLYLTSTD 105 (341)
Q Consensus 94 ~~gGlL~vt~TD 105 (341)
..--++.+|..+
T Consensus 77 ~~~~ii~ls~~~ 88 (140)
T 3h5i_A 77 SELPVVFLTAHT 88 (140)
T ss_dssp CCCCEEEEESSS
T ss_pred CCCCEEEEECCC
Confidence 444566676653
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=86.69 E-value=0.69 Score=43.32 Aligned_cols=88 Identities=13% Similarity=0.048 Sum_probs=56.1
Q ss_pred cccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
|.|...++.++.. |+ +|++.|.|++..+.+++ .+.+ ..+.....|..+.+.+.... ..+|+|+ |.-|.
T Consensus 182 ~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~~~~-~~~d~vi-~~~g~ 250 (347)
T 1jvb_A 182 GLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKR----AGAD----YVINASMQDPLAEIRRITES-KGVDAVI-DLNNS 250 (347)
T ss_dssp HHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHH----HTCS----EEEETTTSCHHHHHHHHTTT-SCEEEEE-ESCCC
T ss_pred cHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHH----hCCC----EEecCCCccHHHHHHHHhcC-CCceEEE-ECCCC
Confidence 5677778888877 88 69999999998887754 3431 11111123333334333211 3689764 55454
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
+ ..++.++++++++|.+.+.
T Consensus 251 ~-~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 251 E-KTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp H-HHHTTGGGGEEEEEEEEEC
T ss_pred H-HHHHHHHHHHhcCCEEEEE
Confidence 2 4778899999999988763
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.64 E-value=1.7 Score=40.90 Aligned_cols=87 Identities=10% Similarity=0.196 Sum_probs=55.0
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...++.++..|+ +|++.|.+++..+.+++ .+.. ..+.....|..+.+.+.. .+..+|+| +|.-|.
T Consensus 182 giG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~----~~~d~~~~~~~~~~~~~~-~~~~~D~v-i~~~G~- 249 (351)
T 1yb5_A 182 GVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAH----EVFNHREVNYIDKIKKYV-GEKGIDII-IEMLAN- 249 (351)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS----EEEETTSTTHHHHHHHHH-CTTCEEEE-EESCHH-
T ss_pred hHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHH----cCCC----EEEeCCCchHHHHHHHHc-CCCCcEEE-EECCCh-
Confidence 455566677777787 69999999988876543 3431 111112234444444332 23468987 455453
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
+.++.++++++++|-+.+.
T Consensus 250 -~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 250 -VNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp -HHHHHHHHHEEEEEEEEEC
T ss_pred -HHHHHHHHhccCCCEEEEE
Confidence 5678899999999988863
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.38 E-value=0.83 Score=42.75 Aligned_cols=88 Identities=15% Similarity=0.066 Sum_probs=55.8
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEE-eccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVT-HFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~-~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
|.|...++.++..|+ +|++.|.+++..+.+++ .+.. ..+.+. ..|..+.+.+... + .+|+|+ |.-|.
T Consensus 181 giG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~----~g~~----~~~d~~~~~~~~~~~~~~~~-~-~~D~vi-~~~g~ 248 (347)
T 2hcy_A 181 GLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS----IGGE----VFIDFTKEKDIVGAVLKATD-G-GAHGVI-NVSVS 248 (347)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH----TTCC----EEEETTTCSCHHHHHHHHHT-S-CEEEEE-ECSSC
T ss_pred hHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH----cCCc----eEEecCccHhHHHHHHHHhC-C-CCCEEE-ECCCc
Confidence 456666777776787 79999999887776654 3431 111111 2345555554322 3 689875 44443
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
.+.++.++++++++|-+.+..
T Consensus 249 -~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 249 -EAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp -HHHHHHHTTSEEEEEEEEECC
T ss_pred -HHHHHHHHHHHhcCCEEEEEe
Confidence 267888999999999887643
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=85.92 E-value=0.13 Score=43.44 Aligned_cols=63 Identities=19% Similarity=0.158 Sum_probs=38.7
Q ss_pred ccccH-hHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE-EeCCC
Q 019408 2 CGCGI-RSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI-DIDSF 79 (341)
Q Consensus 2 agsG~-rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI-dlDPy 79 (341)
+|+|. .++..+.+.|.+ |+++|+|+.|++ +++.|.++-..+.. +.||+| ++-|
T Consensus 44 ~G~g~~vA~~La~~~g~~-V~atDInp~Av~--------------------~v~dDiF~P~~~~Y---~~~DLIYsirP- 98 (153)
T 2k4m_A 44 AGRFLYVSDYIRKHSKVD-LVLTDIKPSHGG--------------------IVRDDITSPRMEIY---RGAALIYSIRP- 98 (153)
T ss_dssp CTTCCHHHHHHHHHSCCE-EEEECSSCSSTT--------------------EECCCSSSCCHHHH---TTEEEEEEESC-
T ss_pred cCCChHHHHHHHHhCCCe-EEEEECCccccc--------------------eEEccCCCCccccc---CCcCEEEEcCC-
Confidence 47774 555555436754 999999999887 23445544322221 269999 9999
Q ss_pred CCCHHHHHHHHH
Q 019408 80 GSDSSFLRTVFN 91 (341)
Q Consensus 80 gsp~~fld~al~ 91 (341)
|.+.....++
T Consensus 99 --P~El~~~i~~ 108 (153)
T 2k4m_A 99 --PAEIHSSLMR 108 (153)
T ss_dssp --CTTTHHHHHH
T ss_pred --CHHHHHHHHH
Confidence 6444433333
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.67 E-value=0.65 Score=43.00 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=52.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH-HHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA-NRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA-~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
|.|...+.+|+..|++ |++.|.+++-.+.+++ .+.+ .+ +...|. .+.+... .+..+|+| +|.-|.
T Consensus 161 ~vG~~~~q~a~~~Ga~-vi~~~~~~~~~~~~~~----lGa~-----~~-i~~~~~~~~~~~~~--~~~~~d~v-id~~g~ 226 (328)
T 1xa0_A 161 GVGSLAVSMLAKRGYT-VEASTGKAAEHDYLRV----LGAK-----EV-LAREDVMAERIRPL--DKQRWAAA-VDPVGG 226 (328)
T ss_dssp HHHHHHHHHHHHTTCC-EEEEESCTTCHHHHHH----TTCS-----EE-EECC---------C--CSCCEEEE-EECSTT
T ss_pred HHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHH----cCCc-----EE-EecCCcHHHHHHHh--cCCcccEE-EECCcH
Confidence 4566777888878885 9999999887777754 4542 21 111121 1222222 23468976 577665
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
+.++.++++++++|.+.+.
T Consensus 227 --~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 227 --RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp --TTHHHHHHTEEEEEEEEEC
T ss_pred --HHHHHHHHhhccCCEEEEE
Confidence 4678899999999998863
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=85.66 E-value=3.2 Score=36.79 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=44.0
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fD 72 (341)
.|||..|...+.+ .|+ +|++.|.+++..+.+.+.++..+ .++.++..|. .+++...... ...|
T Consensus 14 Gas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~~~~-g~id 85 (252)
T 3h7a_A 14 GAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG------GRIVARSLDARNEDEVTAFLNAADAH-APLE 85 (252)
T ss_dssp CCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT------CEEEEEECCTTCHHHHHHHHHHHHHH-SCEE
T ss_pred CCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECcCCCHHHHHHHHHHHHhh-CCce
Confidence 3566666665543 576 69999999988887777776543 2455666554 3334443333 4689
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+++--.
T Consensus 86 ~lv~nA 91 (252)
T 3h7a_A 86 VTIFNV 91 (252)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887654
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=85.55 E-value=1.6 Score=41.32 Aligned_cols=85 Identities=7% Similarity=0.033 Sum_probs=54.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+ +|++.. |++-.+++++ .|.+ .-+.....|..+.+.+.. +..+|+| +|.-|.+
T Consensus 176 ~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~----lGa~----~vi~~~~~~~~~~v~~~t--~g~~d~v-~d~~g~~ 242 (371)
T 3gqv_A 176 ATATVTMQMLRLSGY-IPIATC-SPHNFDLAKS----RGAE----EVFDYRAPNLAQTIRTYT--KNNLRYA-LDCITNV 242 (371)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHH----TTCS----EEEETTSTTHHHHHHHHT--TTCCCEE-EESSCSH
T ss_pred HHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHH----cCCc----EEEECCCchHHHHHHHHc--cCCccEE-EECCCch
Confidence 467888888888888 576664 7777666654 5542 111112345555555442 2349986 5776653
Q ss_pred HHHHHHHHHhc-ccCCEEEE
Q 019408 83 SSFLRTVFNAV-KRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v-~~gGlL~v 101 (341)
..++.+++++ +++|-+.+
T Consensus 243 -~~~~~~~~~l~~~~G~iv~ 261 (371)
T 3gqv_A 243 -ESTTFCFAAIGRAGGHYVS 261 (371)
T ss_dssp -HHHHHHHHHSCTTCEEEEE
T ss_pred -HHHHHHHHHhhcCCCEEEE
Confidence 6678899999 68998876
|
| >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=85.27 E-value=10 Score=28.71 Aligned_cols=53 Identities=15% Similarity=0.039 Sum_probs=40.4
Q ss_pred CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 17 ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 17 a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
..+|..+|-++...+.+++-++..+. .+. ...|..+.+.... ...+|+|++|-
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~------~v~-~~~~~~~a~~~l~--~~~~dlvi~d~ 59 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGA------TTV-LAADGVDALELLG--GFTPDLMICDI 59 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTC------EEE-EESCHHHHHHHHT--TCCCSEEEECC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCc------eEE-EeCCHHHHHHHHh--cCCCCEEEEec
Confidence 45899999999999999999987765 232 3567777666553 34699999995
|
| >3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} | Back alignment and structure |
|---|
Probab=85.24 E-value=11 Score=28.98 Aligned_cols=53 Identities=13% Similarity=0.089 Sum_probs=39.0
Q ss_pred CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 17 ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 17 a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
..+|..+|-++...+.+++-++..+. .+. ...+..+.+.... ...+|+|++|-
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~------~v~-~~~~~~~a~~~l~--~~~~dlii~d~ 59 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGF------HII-SADSGGQCIDLLK--KGFSGVVLLDI 59 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTC------EEE-EESSHHHHHHHHH--TCCCEEEEEES
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCe------EEE-EeCCHHHHHHHHH--hcCCCEEEEeC
Confidence 35799999999999999999997765 332 4455555555443 24699999996
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=85.19 E-value=0.49 Score=43.97 Aligned_cols=63 Identities=17% Similarity=0.116 Sum_probs=46.0
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
|||.|.+++=+-. +|.+-|+++|+++.|+++.+.|.. . +++++|..++-.. .-...|+|.-=|
T Consensus 7 FsG~GG~~~G~~~-aG~~~v~a~e~d~~a~~ty~~N~~---------~--~~~~~DI~~i~~~---~~~~~D~l~ggp 69 (331)
T 3ubt_Y 7 FSGAGGLDLGFQK-AGFRIICANEYDKSIWKTYESNHS---------A--KLIKGDISKISSD---EFPKCDGIIGGP 69 (331)
T ss_dssp SCTTCHHHHHHHH-TTCEEEEEEECCTTTHHHHHHHCC---------S--EEEESCGGGCCGG---GSCCCSEEECCC
T ss_pred CcCccHHHHHHHH-CCCEEEEEEeCCHHHHHHHHHHCC---------C--CcccCChhhCCHh---hCCcccEEEecC
Confidence 8999987765433 799999999999999999999852 1 3567787654322 123579888777
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=85.16 E-value=0.34 Score=45.51 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=55.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+ +|++.|.|++-.+.+++ .+.+ . ++ .|... . .+.+|+|+ |.-|.+
T Consensus 187 ~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~-----~--v~-~~~~~----~---~~~~D~vi-d~~g~~ 245 (348)
T 3two_A 187 GLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MGVK-----H--FY-TDPKQ----C---KEELDFII-STIPTH 245 (348)
T ss_dssp HHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TTCS-----E--EE-SSGGG----C---CSCEEEEE-ECCCSC
T ss_pred HHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cCCC-----e--ec-CCHHH----H---hcCCCEEE-ECCCcH
Confidence 457778888887898 79999999988887765 5552 2 22 33211 1 12689774 776754
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
..++.++++++++|-+.+.
T Consensus 246 -~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 246 -YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp -CCHHHHHTTEEEEEEEEEC
T ss_pred -HHHHHHHHHHhcCCEEEEE
Confidence 3678899999999999874
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=85.07 E-value=1.3 Score=48.10 Aligned_cols=67 Identities=19% Similarity=0.107 Sum_probs=49.2
Q ss_pred CccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhh------------c
Q 019408 1 MCGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYL------------K 67 (341)
Q Consensus 1 fagsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~------------~ 67 (341)
|||.|.+++=+-. +|. +.|+++|+++.|+++.+.|.. ...+++.|+..++..... .
T Consensus 547 FaG~GGlslGl~~-AG~~~vv~avEid~~A~~ty~~N~p----------~~~~~~~DI~~l~~~~~~~di~~~~~~~lp~ 615 (1002)
T 3swr_A 547 FSGCGGLSEGFHQ-AGISDTLWAIEMWDPAAQAFRLNNP----------GSTVFTEDCNILLKLVMAGETTNSRGQRLPQ 615 (1002)
T ss_dssp SCTTSHHHHHHHH-HTSEEEEEEECSSHHHHHHHHHHCT----------TSEEECSCHHHHHHHHHHTCSBCTTCCBCCC
T ss_pred ccCccHHHHHHHH-CCCCceEEEEECCHHHHHHHHHhCC----------CCccccccHHHHhhhccchhhhhhhhhhccc
Confidence 8999998776654 687 778999999999999998853 235678999887643110 1
Q ss_pred CCcccEEEeCC
Q 019408 68 REFFDLIDIDS 78 (341)
Q Consensus 68 ~~~fDvIdlDP 78 (341)
...+|+|.-=|
T Consensus 616 ~~~vDll~GGp 626 (1002)
T 3swr_A 616 KGDVEMLCGGP 626 (1002)
T ss_dssp TTTCSEEEECC
T ss_pred CCCeeEEEEcC
Confidence 12578998887
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=84.71 E-value=10 Score=33.64 Aligned_cols=70 Identities=14% Similarity=0.075 Sum_probs=42.1
Q ss_pred cccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHH-cCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 3 GCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKS-IERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 3 gsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~-n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
|+|..|...+.+ .|+ +|+++|.+++..+.+.+.++. .+- .++.++..|.. +++......-.+.|
T Consensus 16 as~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id 89 (265)
T 3lf2_A 16 GSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPG-----ARLFASVCDVLDALQVRAFAEACERTLGCAS 89 (265)
T ss_dssp CSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTT-----CCEEEEECCTTCHHHHHHHHHHHHHHHCSCS
T ss_pred CCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCC-----ceEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 566666655543 576 599999999988887777764 221 23555555543 33333322223579
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+++--.
T Consensus 90 ~lvnnA 95 (265)
T 3lf2_A 90 ILVNNA 95 (265)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887654
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=84.44 E-value=5.6 Score=35.99 Aligned_cols=133 Identities=15% Similarity=0.101 Sum_probs=72.1
Q ss_pred cccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEecc------HHHHHHHhhhcCCcccE
Q 019408 3 GCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFD------ANRVLSECYLKREFFDL 73 (341)
Q Consensus 3 gsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~D------A~~~l~~~~~~~~~fDv 73 (341)
|++..|...+.. .|+ +|+++|.+++..+-..+-++..+. ++..+..| +.+++.+...+-.+-|+
T Consensus 17 as~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~------~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDi 89 (255)
T 4g81_D 17 SARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGY------DAHGVAFDVTDELAIEAAFSKLDAEGIHVDI 89 (255)
T ss_dssp CSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTC------CEEECCCCTTCHHHHHHHHHHHHHTTCCCCE
T ss_pred CCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC------cEEEEEeeCCCHHHHHHHHHHHHHHCCCCcE
Confidence 444444443332 577 599999999888777776765543 34444444 34445554444446788
Q ss_pred EEeCC-CCCCHHHH----------------------HHHHHhc-c--cCCEEEEEecCCCCCCCCCchhHHhhhccccCC
Q 019408 74 IDIDS-FGSDSSFL----------------------RTVFNAV-K--RDGLLYLTSTDGYSSGGHRPNNSLASYGAYILP 127 (341)
Q Consensus 74 IdlDP-ygsp~~fl----------------------d~al~~v-~--~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~ 127 (341)
++-.- ...+.+|. ..++..+ + .+|-+...++- .+..+....--|+++-
T Consensus 90 LVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~----~~~~~~~~~~~Y~asK-- 163 (255)
T 4g81_D 90 LINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSL----TSQAARPTVAPYTAAK-- 163 (255)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG----GGTSBCTTCHHHHHHH--
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeeh----hhcCCCCCchhHHHHH--
Confidence 86543 11111211 1444444 2 44655544442 2333333344455432
Q ss_pred CCCchhhhHHHHHHHHHHHHHhcCCcE
Q 019408 128 MPYSNEIGLRMLIGGAVREASAQGYHV 154 (341)
Q Consensus 128 ~~~~~E~~lR~ll~~i~~~Aa~~~~~i 154 (341)
-|+.-|-..++.+-+.+|+.+
T Consensus 164 ------aal~~ltr~lA~ela~~gIrV 184 (255)
T 4g81_D 164 ------GGIKMLTCSMAAEWAQFNIQT 184 (255)
T ss_dssp ------HHHHHHHHHHHHHHGGGTEEE
T ss_pred ------HHHHHHHHHHHHHhcccCeEE
Confidence 677888888888877775433
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=84.34 E-value=1.6 Score=40.56 Aligned_cols=87 Identities=13% Similarity=0.226 Sum_probs=55.5
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe-ccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH-FDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~-~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
|.|...++.++..|+ +|++.|.|++..+.+++. .+.. ..+.... .|..+.+.+.. +..+|+|+ |.-|.
T Consensus 167 ~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~---~g~~----~~~d~~~~~~~~~~~~~~~--~~~~d~vi-~~~g~ 235 (345)
T 2j3h_A 167 AVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTK---FGFD----DAFNYKEESDLTAALKRCF--PNGIDIYF-ENVGG 235 (345)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT---SCCS----EEEETTSCSCSHHHHHHHC--TTCEEEEE-ESSCH
T ss_pred HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH---cCCc----eEEecCCHHHHHHHHHHHh--CCCCcEEE-ECCCH
Confidence 455566677776787 799999999888777632 2431 1111111 24444454432 24689874 55453
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
+.++.++++++++|-+.+.
T Consensus 236 --~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 236 --KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp --HHHHHHHTTEEEEEEEEEC
T ss_pred --HHHHHHHHHHhcCCEEEEE
Confidence 6788999999999988864
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=83.98 E-value=3.5 Score=39.85 Aligned_cols=85 Identities=9% Similarity=0.144 Sum_probs=55.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEec--c------------------HHHHHH
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF--D------------------ANRVLS 62 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~--D------------------A~~~l~ 62 (341)
|.|...+.+|+..|+ +|++.+.+++..+.+++ .+.+ .+ +... | ..+.+.
T Consensus 232 ~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~~~----lGa~-----~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 300 (447)
T 4a0s_A 232 GLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVRA----LGCD-----LV-INRAELGITDDIADDPRRVVETGRKLAKLVV 300 (447)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCC-----CE-EEHHHHTCCTTGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCC-----EE-EecccccccccccccccccchhhhHHHHHHH
Confidence 456667778887787 68888999998888754 4542 21 2111 1 022233
Q ss_pred HhhhcCCcccEEEeCCCCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 63 ECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 63 ~~~~~~~~fDvIdlDPygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+.. +..+|+| +|.-|. +.++.++++++++|-+.+..
T Consensus 301 ~~~--g~g~Dvv-id~~G~--~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 301 EKA--GREPDIV-FEHTGR--VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHH--SSCCSEE-EECSCH--HHHHHHHHHSCTTCEEEESC
T ss_pred HHh--CCCceEE-EECCCc--hHHHHHHHHHhcCCEEEEEe
Confidence 322 5579987 466554 67889999999999998743
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.82 E-value=1.3 Score=42.01 Aligned_cols=84 Identities=14% Similarity=0.128 Sum_probs=51.1
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...+.+|+..|+ +|++.+ +++..+.++ ..+.+ ..+.....|..+.+.+ ...+|+| +|.-|.+
T Consensus 195 ~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~----~lGa~----~v~~~~~~~~~~~~~~----~~g~D~v-id~~g~~ 259 (375)
T 2vn8_A 195 GVGTFAIQVMKAWDA-HVTAVC-SQDASELVR----KLGAD----DVIDYKSGSVEEQLKS----LKPFDFI-LDNVGGS 259 (375)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHH----HTTCS----EEEETTSSCHHHHHHT----SCCBSEE-EESSCTT
T ss_pred HHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHH----HcCCC----EEEECCchHHHHHHhh----cCCCCEE-EECCCCh
Confidence 456666777777787 688888 666555553 34542 1111112233333322 2368987 5776765
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
..-++.++++++++|-+..
T Consensus 260 ~~~~~~~~~~l~~~G~iv~ 278 (375)
T 2vn8_A 260 TETWAPDFLKKWSGATYVT 278 (375)
T ss_dssp HHHHGGGGBCSSSCCEEEE
T ss_pred hhhhHHHHHhhcCCcEEEE
Confidence 3445788899999998886
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=83.59 E-value=1.1 Score=42.17 Aligned_cols=83 Identities=20% Similarity=0.239 Sum_probs=54.0
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCH---HHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGND---AHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~---~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
|.|...+.+|+..|+ +|++.|.++ +-.+.+++ .+. +.+. .. |..+.+.+ . +..+|+| +|.-
T Consensus 191 ~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~----~ga-----~~v~-~~-~~~~~~~~-~--~~~~d~v-id~~ 254 (366)
T 2cdc_A 191 PIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEE----TKT-----NYYN-SS-NGYDKLKD-S--VGKFDVI-IDAT 254 (366)
T ss_dssp HHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHH----HTC-----EEEE-CT-TCSHHHHH-H--HCCEEEE-EECC
T ss_pred HHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHH----hCC-----ceec-hH-HHHHHHHH-h--CCCCCEE-EECC
Confidence 457777888887898 899999997 66666653 444 2221 11 22223332 1 1468987 4665
Q ss_pred CCCHHHH-HHHHHhcccCCEEEEE
Q 019408 80 GSDSSFL-RTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 gsp~~fl-d~al~~v~~gGlL~vt 102 (341)
|.+ ..+ +.+++.++++|.+.+.
T Consensus 255 g~~-~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 255 GAD-VNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp CCC-THHHHHHGGGEEEEEEEEEC
T ss_pred CCh-HHHHHHHHHHHhcCCEEEEE
Confidence 654 456 8899999999988764
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=83.53 E-value=0.29 Score=45.25 Aligned_cols=76 Identities=12% Similarity=0.065 Sum_probs=50.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+|+..|+ +|++.| |++-.+.+++ .+. + .+++ | ..+. +..+|+| +|.-|.
T Consensus 153 ~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~----lGa-----~--~v~~-d----~~~v---~~g~Dvv-~d~~g~- 209 (315)
T 3goh_A 153 AVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAK----RGV-----R--HLYR-E----PSQV---TQKYFAI-FDAVNS- 209 (315)
T ss_dssp HHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHH----HTE-----E--EEES-S----GGGC---CSCEEEE-ECC----
T ss_pred HHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHH----cCC-----C--EEEc-C----HHHh---CCCccEE-EECCCc-
Confidence 568888899988898 899999 8888888765 454 1 2333 4 1221 5679976 577665
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
+.+..++++++++|-+.+.
T Consensus 210 -~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 210 -QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp -----TTGGGEEEEEEEEEE
T ss_pred -hhHHHHHHHhcCCCEEEEE
Confidence 3347789999999998864
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=83.51 E-value=1.8 Score=39.42 Aligned_cols=81 Identities=11% Similarity=0.077 Sum_probs=53.0
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|...+..|+..|+ +|++.|.+++..+.+++ .+. +.+ +...+..++.... ..+|+|+ | -|.
T Consensus 137 ~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga-----~~~-~~~~~~~~~~~~~----~~~d~vi-d-~g~- 198 (302)
T 1iz0_A 137 ALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGA-----EEA-ATYAEVPERAKAW----GGLDLVL-E-VRG- 198 (302)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTC-----SEE-EEGGGHHHHHHHT----TSEEEEE-E-CSC-
T ss_pred HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCC-----CEE-EECCcchhHHHHh----cCceEEE-E-CCH-
Confidence 445666777777788 79999999888877654 454 221 2222202233322 3689875 4 665
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
+.+..++++++++|.+.+.
T Consensus 199 -~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 199 -KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp -TTHHHHHTTEEEEEEEEEC
T ss_pred -HHHHHHHHhhccCCEEEEE
Confidence 5678899999999988753
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=83.05 E-value=0.7 Score=42.35 Aligned_cols=54 Identities=11% Similarity=0.203 Sum_probs=42.1
Q ss_pred ccEEEEeccHHHHHHHhhh--cCCcccEEEeCC--CCCCHHHHHHHHHhcccCCEEEE
Q 019408 48 KRWVVTHFDANRVLSECYL--KREFFDLIDIDS--FGSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 48 ~~~~v~~~DA~~~l~~~~~--~~~~fDvIdlDP--ygsp~~fld~al~~v~~gGlL~v 101 (341)
++++++.+++.+.|..... ...+||+|++|= |.+-...++..+..|++||+|++
T Consensus 158 ~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~ 215 (257)
T 3tos_A 158 QRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAF 215 (257)
T ss_dssp CSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEE
Confidence 5799999999999977532 234799999997 43223467888899999999997
|
| >1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y | Back alignment and structure |
|---|
Probab=82.98 E-value=11 Score=27.99 Aligned_cols=52 Identities=10% Similarity=0.013 Sum_probs=36.9
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+|..+|-++...+.+++-++..+. .+.....+....+..... ..+|+|++|-
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~------~vv~~~~~~~~a~~~~~~--~~~dlil~D~ 55 (120)
T 1tmy_A 4 RVLIVDDAAFMRMMLKDIITKAGY------EVAGEATNGREAVEKYKE--LKPDIVTMDI 55 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC------EEEEEESSHHHHHHHHHH--HCCSEEEEEC
T ss_pred eEEEEcCcHHHHHHHHHHHhhcCc------EEEEEECCHHHHHHHHHh--cCCCEEEEeC
Confidence 688999999999999999986655 222234555555544322 3689999996
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=82.82 E-value=0.47 Score=44.77 Aligned_cols=83 Identities=16% Similarity=0.087 Sum_probs=53.5
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH-HHHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN-RVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~-~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+.|...+.+|+..|+ +|++.|.|++-.+.+++ .+.+ . ++..+.. ++..... ..+|+| +|.-|.
T Consensus 190 ~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~----lGa~-----~--v~~~~~~~~~~~~~~---~~~D~v-id~~g~ 253 (360)
T 1piw_A 190 GIGSMGTLISKAMGA-ETYVISRSSRKREDAMK----MGAD-----H--YIATLEEGDWGEKYF---DTFDLI-VVCASS 253 (360)
T ss_dssp HHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCS-----E--EEEGGGTSCHHHHSC---SCEEEE-EECCSC
T ss_pred HHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH----cCCC-----E--EEcCcCchHHHHHhh---cCCCEE-EECCCC
Confidence 567788888887788 59999999888887765 4542 2 2221111 2222221 368977 455443
Q ss_pred --CHHHHHHHHHhcccCCEEEEE
Q 019408 82 --DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 --p~~fld~al~~v~~gGlL~vt 102 (341)
+ ..++.++++++++|.+.+.
T Consensus 254 ~~~-~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 254 LTD-IDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp STT-CCTTTGGGGEEEEEEEEEC
T ss_pred CcH-HHHHHHHHHhcCCCEEEEe
Confidence 2 4456789999999988863
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=82.34 E-value=0.89 Score=47.70 Aligned_cols=53 Identities=21% Similarity=0.079 Sum_probs=40.6
Q ss_pred CccccHhHHHHhhhCC------CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHh
Q 019408 1 MCGCGIRSLRYLAEAK------ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSEC 64 (341)
Q Consensus 1 fagsG~rgir~a~e~g------a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~ 64 (341)
|||.|.+++=+-. +| .+-|+++|+|+.|+++.+.|.- ...+++.|+++++...
T Consensus 219 FAG~GGls~Gfe~-AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp----------~~~~~~~di~~i~~~~ 277 (784)
T 4ft4_B 219 YSGCGGMSTGLCL-GAALSGLKLETRWAVDFNSFACQSLKYNHP----------QTEVRNEKADEFLALL 277 (784)
T ss_dssp TCTTSHHHHHHHH-HHHHHTEEEEEEEEEESCHHHHHHHHHHCT----------TSEEEESCHHHHHHHH
T ss_pred CcCccHHHHHHHH-hCcccCCceeEEEEEeCCHHHHHHHHHHCC----------CCceecCcHHHhhhhh
Confidence 8999998765543 23 4678999999999999999864 2356789998887543
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.04 E-value=17 Score=32.18 Aligned_cols=71 Identities=11% Similarity=0.031 Sum_probs=43.3
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.|+|..|...+.+ .|+ +|++.|.+++..+.+.+.++..+- .++.++..|.. +++.+....-...|
T Consensus 17 Gas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id 90 (262)
T 3pk0_A 17 GGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGS-----GKVIGVQTDVSDRAQCDALAGRAVEEFGGID 90 (262)
T ss_dssp TCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSS-----SCEEEEECCTTSHHHHHHHHHHHHHHHSCCS
T ss_pred CCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCC-----CcEEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3666667665543 576 699999999988877777764431 24556666643 23333222223679
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+++--.
T Consensus 91 ~lvnnA 96 (262)
T 3pk0_A 91 VVCANA 96 (262)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887654
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=81.75 E-value=19 Score=31.62 Aligned_cols=70 Identities=7% Similarity=-0.061 Sum_probs=44.3
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.|||..|...+.+ .|+ +|++.|.+++..+.+.+.++..+. ++.++..|.. +++........+.|
T Consensus 36 Gas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 108 (262)
T 3rkr_A 36 GASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGG------EAESHACDLSHSDAIAAFATGVLAAHGRCD 108 (262)
T ss_dssp STTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC------EEEEEECCTTCHHHHHHHHHHHHHHHSCCS
T ss_pred CCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCC------ceeEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence 4677777666554 576 599999999988888777765432 4556666643 23333222223579
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+|+.-.
T Consensus 109 ~lv~~A 114 (262)
T 3rkr_A 109 VLVNNA 114 (262)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=81.63 E-value=1.3 Score=42.02 Aligned_cols=84 Identities=13% Similarity=-0.052 Sum_probs=58.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|+|..++..++.....+++.+|+ +..++..+++ .++++..+|+++- . +.. |+|++-- +.
T Consensus 212 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~~---~---p~~-D~v~~~~vlh 272 (368)
T 3reo_A 212 GGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-----------SGVEHLGGDMFDG---V---PKG-DAIFIKWICH 272 (368)
T ss_dssp CTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----------TTEEEEECCTTTC---C---CCC-SEEEEESCGG
T ss_pred CCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-----------CCCEEEecCCCCC---C---CCC-CEEEEechhh
Confidence 699999999988633347899999 8777655431 2578889998741 1 122 9887643 11
Q ss_pred -CC----HHHHHHHHHhcccCCEEEEEec
Q 019408 81 -SD----SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 -sp----~~fld~al~~v~~gGlL~vt~T 104 (341)
.+ ..++..+.++|++||.|.+...
T Consensus 273 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 273 DWSDEHCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp GBCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 11 2467788889999999988554
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=81.57 E-value=1.1 Score=42.03 Aligned_cols=83 Identities=12% Similarity=0.052 Sum_probs=57.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
+|+|..+...+....-.+++.+|+ +..++.+++ . ..+++..+|+++ . . + .||+|++--
T Consensus 202 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-----~~v~~~~~d~~~---~--~-~-~~D~v~~~~vlh 262 (358)
T 1zg3_A 202 GGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N-----ENLNFVGGDMFK---S--I-P-SADAVLLKWVLH 262 (358)
T ss_dssp CTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C-----SSEEEEECCTTT---C--C-C-CCSEEEEESCGG
T ss_pred CCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C-----CCcEEEeCccCC---C--C-C-CceEEEEccccc
Confidence 689999999987532347899999 676654442 2 237788999874 1 1 2 499887743
Q ss_pred -CCCCH--HHHHHHHHhccc---CCEEEEEe
Q 019408 79 -FGSDS--SFLRTVFNAVKR---DGLLYLTS 103 (341)
Q Consensus 79 -ygsp~--~fld~al~~v~~---gGlL~vt~ 103 (341)
+..+. .++..+.++|++ ||.|.+..
T Consensus 263 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 263 DWNDEQSLKILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp GSCHHHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 22222 667788889999 99888754
|
| >2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=81.16 E-value=11 Score=29.13 Aligned_cols=52 Identities=17% Similarity=0.082 Sum_probs=39.0
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
.+|..+|-++...+.+++-++..+. .+. ...+..+.+..+. ...+|+|++|-
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~------~v~-~~~~~~~a~~~l~--~~~~dlvi~d~ 56 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGF------NVI-WAKNEQEAFTFLR--REKIDLVFVDV 56 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTC------EEE-EESSHHHHHHHHT--TSCCSEEEEEC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCC------EEE-EECCHHHHHHHHh--ccCCCEEEEeC
Confidence 4689999999999999999887665 333 4556666665543 24799999997
|
| >3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=80.76 E-value=14 Score=30.31 Aligned_cols=78 Identities=15% Similarity=0.148 Sum_probs=49.8
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---CCCCHHHHHHHHHhcc
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS---FGSDSSFLRTVFNAVK 94 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP---ygsp~~fld~al~~v~ 94 (341)
.+|..+|-++...+.++.-++..+. .+ ....|..+.+.... ...||+|++|- =.....++...-+.-.
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g~------~v-~~~~~~~~al~~~~--~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~ 78 (184)
T 3rqi_A 8 KNFLVIDDNEVFAGTLARGLERRGY------AV-RQAHNKDEALKLAG--AEKFEFITVXLHLGNDSGLSLIAPLCDLQP 78 (184)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC------EE-EEECSHHHHHHHHT--TSCCSEEEECSEETTEESHHHHHHHHHHCT
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCC------EE-EEeCCHHHHHHHHh--hCCCCEEEEeccCCCccHHHHHHHHHhcCC
Confidence 4799999999999999999987665 33 34567777766553 34699999995 2222344443322222
Q ss_pred cCCEEEEEec
Q 019408 95 RDGLLYLTST 104 (341)
Q Consensus 95 ~gGlL~vt~T 104 (341)
.--++.+|+.
T Consensus 79 ~~~ii~lt~~ 88 (184)
T 3rqi_A 79 DARILVLTGY 88 (184)
T ss_dssp TCEEEEEESS
T ss_pred CCCEEEEeCC
Confidence 2335556553
|
| >3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=80.74 E-value=17 Score=27.76 Aligned_cols=79 Identities=9% Similarity=-0.037 Sum_probs=48.9
Q ss_pred CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C---CCCHHHHHHHHHh
Q 019408 17 ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F---GSDSSFLRTVFNA 92 (341)
Q Consensus 17 a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y---gsp~~fld~al~~ 92 (341)
..+|..+|-++...+.+++-++..++ .+.....+..+.+..... ..+|+|++|- . .....++...-+.
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~------~v~~~~~~~~~a~~~~~~--~~~dlii~d~~~~~~~~g~~~~~~l~~~ 80 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGY------DVLGVFDNGEEAVRCAPD--LRPDIALVDIMLCGALDGVETAARLAAG 80 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTC------EEEEEESSHHHHHHHHHH--HCCSEEEEESSCCSSSCHHHHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCC------eeEEEECCHHHHHHHHHh--CCCCEEEEecCCCCCCCHHHHHHHHHhC
Confidence 45799999999999999999997766 233234555555544432 3699999995 2 1222344332222
Q ss_pred cccCCEEEEEec
Q 019408 93 VKRDGLLYLTST 104 (341)
Q Consensus 93 v~~gGlL~vt~T 104 (341)
..--++.+|..
T Consensus 81 -~~~~ii~ls~~ 91 (140)
T 3cg0_A 81 -CNLPIIFITSS 91 (140)
T ss_dssp -SCCCEEEEECC
T ss_pred -CCCCEEEEecC
Confidence 34456666543
|
| >4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A | Back alignment and structure |
|---|
Probab=80.63 E-value=18 Score=28.33 Aligned_cols=54 Identities=13% Similarity=0.072 Sum_probs=38.7
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
-+|..+|-++...+.+++-++..+- ........|..+.+..+. ...+|+|++|-
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~-----~~~v~~~~~~~~al~~l~--~~~~dlii~D~ 74 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPD-----VESVLQAKNGQEAIQLLE--KESVDIAILDV 74 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTT-----EEEEEEESSHHHHHHHHT--TSCCSEEEECS
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCC-----cEEEEEECCHHHHHHHhh--ccCCCEEEEeC
Confidence 4799999999999999998885531 112234566666666543 34699999996
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=80.56 E-value=0.54 Score=44.12 Aligned_cols=54 Identities=9% Similarity=-0.140 Sum_probs=43.3
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHH
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLS 62 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~ 62 (341)
|+|||.-++.+.. .| .+.+.+|+++.++++++++++..+. ....++.|+.+++.
T Consensus 260 F~GsGtt~~aa~~-~g-r~~ig~e~~~~~~~~~~~r~~~~~~------~~~~~~~~~~~i~~ 313 (323)
T 1boo_A 260 FGGSNTTGLVAER-ES-RKWISFEMKPEYVAASAFRFLDNNI------SEEKITDIYNRILN 313 (323)
T ss_dssp TCTTCHHHHHHHH-TT-CEEEEEESCHHHHHHHHGGGSCSCS------CHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHH-cC-CCEEEEeCCHHHHHHHHHHHHhccc------chHHHHHHHHHHHc
Confidence 8999999999887 46 5688999999999999999885544 23456788887754
|
| >3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=80.51 E-value=14 Score=28.91 Aligned_cols=55 Identities=16% Similarity=0.036 Sum_probs=39.2
Q ss_pred CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 17 ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 17 a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
-.+|..+|-++...+.+++-++..+. ..+.....|..+.+..... ..+|+|++|-
T Consensus 15 ~~~iLivdd~~~~~~~l~~~L~~~~~-----~~~v~~~~~~~~a~~~l~~--~~~dlii~d~ 69 (152)
T 3eul_A 15 KVRVVVGDDHPLFREGVVRALSLSGS-----VNVVGEADDGAAALELIKA--HLPDVALLDY 69 (152)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHSS-----EEEEEEESSHHHHHHHHHH--HCCSEEEEET
T ss_pred eEEEEEEcCCHHHHHHHHHHHhhCCC-----eEEEEEeCCHHHHHHHHHh--cCCCEEEEeC
Confidence 46799999999999999999987653 1222245566666654432 3699999996
|
| >1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A | Back alignment and structure |
|---|
Probab=80.50 E-value=25 Score=29.65 Aligned_cols=79 Identities=15% Similarity=0.065 Sum_probs=49.2
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC--C-CCHHHHHHHHHhc-
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF--G-SDSSFLRTVFNAV- 93 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy--g-sp~~fld~al~~v- 93 (341)
-+|..+|-++...+.++.-++..+. .+. ...|..+.+..... ..+|+|++|-- + ....++. .++..
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~------~v~-~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~g~~~~~-~l~~~~ 77 (233)
T 1ys7_A 8 PRVLVVDDDSDVLASLERGLRLSGF------EVA-TAVDGAEALRSATE--NRPDAIVLDINMPVLDGVSVVT-ALRAMD 77 (233)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC------EEE-EESSHHHHHHHHHH--SCCSEEEEESSCSSSCHHHHHH-HHHHTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCC------EEE-EECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHH-HHHhcC
Confidence 4699999999999999999987655 332 45566666654432 46999999962 2 1123332 23322
Q ss_pred ccCCEEEEEecCC
Q 019408 94 KRDGLLYLTSTDG 106 (341)
Q Consensus 94 ~~gGlL~vt~TD~ 106 (341)
..-.++.+|+.+.
T Consensus 78 ~~~~ii~lt~~~~ 90 (233)
T 1ys7_A 78 NDVPVCVLSARSS 90 (233)
T ss_dssp CCCCEEEEECCCT
T ss_pred CCCCEEEEEcCCC
Confidence 2335677766543
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=80.44 E-value=2.7 Score=46.90 Aligned_cols=67 Identities=18% Similarity=0.098 Sum_probs=49.6
Q ss_pred CccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhh------------c
Q 019408 1 MCGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYL------------K 67 (341)
Q Consensus 1 fagsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~------------~ 67 (341)
|||.|.+++=+-. +|. +.|+++|+++.|+++.+.|.. ...+++.|+..++..... .
T Consensus 858 FsG~GGlslGfe~-AG~~~vv~avEid~~A~~ty~~N~p----------~~~~~~~DI~~l~~~~~~gdi~~~~~~~lp~ 926 (1330)
T 3av4_A 858 FSGCGGLSEGFHQ-AGISETLWAIEMWDPAAQAFRLNNP----------GTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQ 926 (1330)
T ss_dssp TCTTSHHHHHHHH-TTSEEEEEEECCSHHHHHHHHHHCT----------TSEEECSCHHHHHHHHTTTCSBCSSCCBCCC
T ss_pred ccCccHHHHHHHH-CCCCceEEEEECCHHHHHHHHHhCC----------CCcEeeccHHHHhHhhhccchhhhhhhhccc
Confidence 8999998876654 786 678999999999999999852 234678999988754210 0
Q ss_pred CCcccEEEeCC
Q 019408 68 REFFDLIDIDS 78 (341)
Q Consensus 68 ~~~fDvIdlDP 78 (341)
...+|+|.--|
T Consensus 927 ~~~vDvl~GGp 937 (1330)
T 3av4_A 927 KGDVEMLCGGP 937 (1330)
T ss_dssp TTTCSEEEECC
T ss_pred cCccceEEecC
Confidence 12478888877
|
| >3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=80.36 E-value=10 Score=28.62 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=38.2
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
.+|..+|-++...+.+++-++..+. .+. ...+..+.+..... ..+|+|++|-
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~------~v~-~~~~~~~a~~~l~~--~~~dlii~D~ 55 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGF------QAD-YVMSGTDALHAMST--RGYDAVFIDL 55 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTE------EEE-EESSHHHHHHHHHH--SCCSEEEEES
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCC------CEE-EECCHHHHHHHHHh--cCCCEEEEeC
Confidence 3689999999999999999987764 232 34566666554432 4699999996
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 341 | ||||
| d2dula1 | 375 | c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tR | 9e-86 |
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 261 bits (668), Expect = 9e-86
Identities = 92/343 (26%), Positives = 146/343 (42%), Gaps = 31/343 (9%)
Query: 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLK----------SIERGSGDEKRW 50
+ GIR +R+ E A+ V ND ++ ++ N+ EK
Sbjct: 53 LSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTI 112
Query: 51 VVTHFDANRVLSECYLKREFFDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSG 110
V+ H DANR+ + +F ID+D FGS FL T + KR G+L +T+TDG
Sbjct: 113 VINHDDANRL---MAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATDGAPLC 169
Query: 111 GHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYYSYHGPVFRV 170
G P L Y A L +E+G R+L+G R A+ + + +YY H FR
Sbjct: 170 GAHPRACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKYDLGIDVILAYYKDH--YFRA 227
Query: 171 MLRVHRKALPDNRHYGFISYCNHCGNSQAYSWEELGQMSCPCSNTIGSSSLVVSGPLWTG 230
+++ A + + Y + + EL Q P GP+W G
Sbjct: 228 FVKLKDGARKGDETLEKLGYIYFDDKTGKF---ELEQGFLPT-------RPNAYGPVWLG 277
Query: 231 PLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKM 290
PL D ++KM+ AE KLL + E D P + + R K+
Sbjct: 278 PLKDEKIVSKMVKEAESLSL---ARKKQALKLLKMIDQELDI--PL-FYDTHAIGRRLKI 331
Query: 291 NSPSLKTMMSAVQKEGYVASRSHIASNAIKTNCPMVACIRIAK 333
+ ++ ++SA++++GY A+R+H + IKT+ P I K
Sbjct: 332 ETKKVEEIISALREQGYEATRTHFSPTGIKTSAPYEVFIETIK 374
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 341 | |||
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 100.0 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.77 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.75 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.73 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.73 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.7 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.68 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.68 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.62 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.59 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.54 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.07 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.02 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.84 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.77 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.73 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.73 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.72 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.44 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.44 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.42 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.41 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.4 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.4 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.33 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.33 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.32 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.29 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.27 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 98.26 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.26 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.24 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 98.21 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.21 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 98.21 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.19 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.18 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.17 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.16 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.13 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 98.1 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 98.09 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.07 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 98.05 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 98.0 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 97.96 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.95 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 97.94 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 97.92 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 97.91 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.91 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 97.89 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 97.89 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 97.79 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.74 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 97.68 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 97.63 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 97.62 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.58 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 97.5 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.48 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 97.48 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 97.47 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.47 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.4 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 97.39 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 97.38 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 97.38 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 97.3 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 97.28 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 97.28 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.26 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 97.16 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 97.14 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 97.03 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 97.0 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 96.73 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 96.66 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 96.65 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.65 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.62 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 96.6 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.39 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.29 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.15 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 96.14 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 96.11 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.03 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 95.95 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.55 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 95.52 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 95.49 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.38 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 95.2 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.13 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.05 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.85 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.83 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.72 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.59 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.58 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 94.52 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 94.47 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.29 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.28 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.21 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.0 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 93.8 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.77 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.74 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 93.43 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 93.43 | |
| d1ys7a2 | 121 | Transcriptional regulatory protein PrrA, N-termina | 93.02 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 92.91 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 92.24 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 92.18 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 92.16 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.94 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 91.62 | |
| d1mvoa_ | 121 | PhoP receiver domain {Bacillus subtilis [TaxId: 14 | 91.02 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 90.64 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 90.28 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 90.24 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 90.1 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 88.99 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 88.92 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 88.75 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 88.54 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 88.45 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 88.22 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 87.84 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 87.2 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 87.04 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 86.44 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 86.26 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 86.13 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 86.01 | |
| d2b4aa1 | 118 | Hypothetical protein BH3024 {Bacillus halodurans [ | 85.99 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 85.89 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 85.88 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 85.82 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 85.65 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 85.55 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 85.47 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 85.46 | |
| d1p2fa2 | 120 | Response regulator DrrB {Thermotoga maritima [TaxI | 85.22 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 85.17 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 85.13 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 84.48 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 84.11 | |
| d1zgza1 | 120 | TorCAD operon transcriptional regulator TorD, N-te | 83.83 | |
| d1k68a_ | 140 | Response regulator for cyanobacterial phytochrome | 83.81 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 83.43 | |
| d1qkka_ | 140 | Transcriptional regulatory protein DctD, receiver | 83.32 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 83.18 | |
| d1yioa2 | 128 | Response regulatory protein StyR, N-terminal domai | 82.8 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 82.52 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 82.51 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 82.46 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 82.22 | |
| d1dz3a_ | 123 | Sporulation response regulator Spo0A {Bacillus ste | 82.07 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 82.02 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 81.92 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 81.44 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 81.06 |
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.2e-91 Score=681.62 Aligned_cols=309 Identities=29% Similarity=0.452 Sum_probs=285.0
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCC----------CCccEEEEeccHHHHHHHhhhcCCc
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSG----------DEKRWVVTHFDANRVLSECYLKREF 70 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~----------~~~~~~v~~~DA~~~l~~~~~~~~~ 70 (341)
|||||+||||||+|.|+++|++||+|+.|+++|++|+++|++... ....+.+.+.||+.+|... +++
T Consensus 53 ~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~---~~~ 129 (375)
T d2dula1 53 LSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER---HRY 129 (375)
T ss_dssp SCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS---TTC
T ss_pred CCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHhh---cCc
Confidence 799999999999999999999999999999999999999986310 0134678999999999763 568
Q ss_pred ccEEEeCCCCCCHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhc
Q 019408 71 FDLIDIDSFGSDSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQ 150 (341)
Q Consensus 71 fDvIdlDPygsp~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~ 150 (341)
||+|||||||+|+||+|+|++++++||+|+||+||+++|||++|++|+||||+++.+++|+||+|+|+||+.|+|+|++|
T Consensus 130 fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~glRill~~i~r~Aa~~ 209 (375)
T d2dula1 130 FHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATDGAPLCGAHPRACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKY 209 (375)
T ss_dssp EEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHHHSSBCCCSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcccCCCCCCcHHHHHHHHHHhccCCEEEEEecCchhhcCCCcHHHHHHhCCeecCCcccchHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecccCCCCeEEEEEEEEeCccc---ccccceeEEEcCCCCCcccccccccCCCCC-CCCCCCCCCcceeecc
Q 019408 151 GYHVSPLFSYYSYHGPVFRVMLRVHRKALP---DNRHYGFISYCNHCGNSQAYSWEELGQMSC-PCSNTIGSSSLVVSGP 226 (341)
Q Consensus 151 ~~~i~Pl~s~~~~~dhy~Rv~vrv~~~~~~---~~~~~g~v~~C~~C~~~~~~~~~~~~~~~C-~c~~~~~~~~~~~~GP 226 (341)
+++|+||+|++ .|||+||||||.+|+.. ..+++||++||.+|++++++ | .|+. +++++||
T Consensus 210 ~~~i~PllS~~--~~~y~Rv~vrv~~~~~~~~~~~~~~g~~~~C~~c~~~~~~---------~~~~~~-----~~~~~GP 273 (375)
T d2dula1 210 DLGIDVILAYY--KDHYFRAFVKLKDGARKGDETLEKLGYIYFDDKTGKFELE---------QGFLPT-----RPNAYGP 273 (375)
T ss_dssp TEEEEEEEEEE--ETTEEEEEEEEEESHHHHHHHHTTEEEEEECTTTCCEEEE---------ESSSCC-----SSSCEEE
T ss_pred CCeeEEEEEEE--ecceEEEEEEEecChHHHHHHHHhcCcEEEcCCCCCEEEe---------cCCCCC-----CCCCcCC
Confidence 99999999999 99999999999999865 56789999999999999862 4 5665 7889999
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHhhcccCCCCCCcceehhHHHhhcCCCCCCHHHHHHHHHHCC
Q 019408 227 LWTGPLHDATHITKMLNLAEKWGWVGDGTGTDLEKLLSRMIDESDPRLPFGYIKLDEMASRAKMNSPSLKTMMSAVQKEG 306 (341)
Q Consensus 227 lW~G~lhd~~fv~~~l~~~~~~~~~~~~~~~~~~~ll~~~~~e~~~~~pp~yy~~~~l~~~~k~~~p~~~~~~~~L~~~G 306 (341)
||+|||||++|+++|++++++..|. +..++.++|+.+.+| .+ +|+||++++||+++|+++||++.++++|+++|
T Consensus 274 lW~G~L~d~efl~~~~~~~~~~~~~---~~~~~~~ll~~i~eE--~~-~P~~y~l~~la~~lk~~~P~~~~~~~aL~~~G 347 (375)
T d2dula1 274 VWLGPLKDEKIVSKMVKEAESLSLA---RKKQALKLLKMIDQE--LD-IPLFYDTHAIGRRLKIETKKVEEIISALREQG 347 (375)
T ss_dssp EECSCSBCHHHHHHHHHHHHTSCCT---THHHHHHHHHHHHHS--CC-SSCCEEHHHHHHHHTCCBCCHHHHHHHHHHTT
T ss_pred CccCcccCHHHHHHHHHHhhccCcc---hhhHHHHHHHHHHhc--cC-CCeEEcHHHHHHHcCCCCCCHHHHHHHHHHCC
Confidence 9999999999999999999988774 445789999999987 43 46899999999999999999999999999999
Q ss_pred CEEeeeecCCCceecCCCHHHHHHHHHh
Q 019408 307 YVASRSHIASNAIKTNCPMVACIRIAKE 334 (341)
Q Consensus 307 y~as~tH~~~~~iKTdAp~~~i~~i~~~ 334 (341)
|+||||||+|+|||||||+++||+|||.
T Consensus 348 y~asrtH~~p~~iKTdAp~~~i~~i~r~ 375 (375)
T d2dula1 348 YEATRTHFSPTGIKTSAPYEVFIETIKR 375 (375)
T ss_dssp CCEEEETTEEEEEEESSCHHHHHHHHBC
T ss_pred CEEEecCCCCCCEecCCCHHHHHHHHhC
Confidence 9999999999999999999999999983
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.77 E-value=2.1e-18 Score=163.37 Aligned_cols=137 Identities=19% Similarity=0.122 Sum_probs=117.9
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
|||||.+|+.+|+ .|+.+|+++|+|+.+++.+++|+++|++. .+++++++|+++++......+++||+|++||
T Consensus 153 ~~g~G~~si~~a~-~ga~~V~~vD~s~~al~~a~~N~~~ngl~----~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~ 227 (324)
T d2as0a2 153 FTYTGGFAIHAAI-AGADEVIGIDKSPRAIETAKENAKLNGVE----DRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPA 227 (324)
T ss_dssp TCTTTHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCG----GGEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred cCcccchhhhhhh-cCCcEEEeecCCHHHHHHHHHHHHHcCCC----ccceeeechhhhhhHHHHhccCCCCchhcCCcc
Confidence 7999999999998 69999999999999999999999999995 5788999999999988777788999999999
Q ss_pred CCCC-----------HHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHH
Q 019408 79 FGSD-----------SSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREA 147 (341)
Q Consensus 79 ygsp-----------~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~A 147 (341)
|+.. ..++..|+++|++||+|.+ +| |. +.+....|+..+.+++
T Consensus 228 ~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~-~s-----~s--------------------~~~~~~~f~~~v~~a~ 281 (324)
T d2as0a2 228 FVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVT-CS-----CS--------------------QHVDLQMFKDMIIAAG 281 (324)
T ss_dssp SCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEE-EE-----CC--------------------TTSCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE-Ee-----CC--------------------ccCCHHHHHHHHHHHH
Confidence 3322 1256788999999999986 54 64 3477788999999999
Q ss_pred HhcCCcEEEEEec-ccCCCCeE
Q 019408 148 SAQGYHVSPLFSY-YSYHGPVF 168 (341)
Q Consensus 148 a~~~~~i~Pl~s~-~~~~dhy~ 168 (341)
.+.++.++.+-.+ +||.||++
T Consensus 282 ~~~gr~~~~~~~~~~~~~DhP~ 303 (324)
T d2as0a2 282 AKAGKFLKMLEPYRTQAPDHPI 303 (324)
T ss_dssp HHTTEEEEESSCBBCSCTTSCC
T ss_pred HHcCCeEEEeeecCCCCCCCCC
Confidence 9999999999774 68899954
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.75 E-value=6.2e-18 Score=159.79 Aligned_cols=136 Identities=13% Similarity=0.077 Sum_probs=113.3
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
|||||.+||.+++ .||.+|+++|+|+.+++++++|+++|+++ ..+++++++|++++|.....++++||+|++||
T Consensus 152 f~~~G~~sl~aa~-~ga~~V~~vD~s~~a~~~a~~N~~~n~l~---~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~ 227 (317)
T d2b78a2 152 FSYTAAFSVAAAM-GGAMATTSVDLAKRSRALSLAHFEANHLD---MANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPS 227 (317)
T ss_dssp TCTTTHHHHHHHH-TTBSEEEEEESCTTHHHHHHHHHHHTTCC---CTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CCCCcHHHHHHHh-CCCceEEEecCCHHHHHHHHHHHHHhccc---CcceEEEEccHHHHHHHHHhhcCCCCEEEEcChh
Confidence 7999999999888 79999999999999999999999999984 24688999999999998877788999999999
Q ss_pred CCCC-----------HHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHH
Q 019408 79 FGSD-----------SSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREA 147 (341)
Q Consensus 79 ygsp-----------~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~A 147 (341)
|++. ...+..|+++|++||+|.+ +| |.. .+..+.|...+.+++
T Consensus 228 f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~-~s-----cs~--------------------~~~~~~f~~~v~~a~ 281 (317)
T d2b78a2 228 FARNKKEVFSVSKDYHKLIRQGLEILSENGLIIA-ST-----NAA--------------------NMTVSQFKKQIEKGF 281 (317)
T ss_dssp C-----CCCCHHHHHHHHHHHHHHTEEEEEEEEE-EE-----CCT--------------------TSCHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEE-Ee-----CCc--------------------cCCHHHHHHHHHHHH
Confidence 5421 1356789999999999997 54 643 377788899999999
Q ss_pred HhcCCcEEEEEecccCCCCeE
Q 019408 148 SAQGYHVSPLFSYYSYHGPVF 168 (341)
Q Consensus 148 a~~~~~i~Pl~s~~~~~dhy~ 168 (341)
.+.++.+..+. .+|.||++
T Consensus 282 ~~~~~~~~~~~--~~~~DfP~ 300 (317)
T d2b78a2 282 GKQKHTYLDLQ--QLPSDFAV 300 (317)
T ss_dssp TTCCCEEEEEE--CCCTTSCC
T ss_pred HHcCCeEEEec--cCCCCCCC
Confidence 88888777665 45689865
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.73 E-value=2.8e-18 Score=149.81 Aligned_cols=120 Identities=20% Similarity=0.300 Sum_probs=95.7
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||.+||++++ +||++|+++|.|+.|++.+++|++.++.. ++++++++||+++|......+.+||+|++|| |
T Consensus 49 faGsG~~g~ea~s-rGa~~v~~ve~~~~a~~~~~~N~~~~~~~----~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY 123 (182)
T d2fhpa1 49 YSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEP----EKFEVRKMDANRALEQFYEEKLQFDLVLLDPPY 123 (182)
T ss_dssp TCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCG----GGEEEEESCHHHHHHHHHHTTCCEEEEEECCCG
T ss_pred ccccccccceeee-cchhHHHHHHHHHHHHHHHHHHhhhhhcc----cccccccccchhhhhhhcccCCCcceEEechhh
Confidence 7999999999999 89999999999999999999999998874 6799999999999988766778999999999 6
Q ss_pred CCC--HHHHHHHHH--hcccCCEEEEEecCCCC---CCCCCchhHHhhhcccc
Q 019408 80 GSD--SSFLRTVFN--AVKRDGLLYLTSTDGYS---SGGHRPNNSLASYGAYI 125 (341)
Q Consensus 80 gsp--~~fld~al~--~v~~gGlL~vt~TD~~~---l~g~~~~~~~r~Yg~~~ 125 (341)
+.. ...++..++ .|+++|+++++..-... ..........++||.+-
T Consensus 124 ~~~~~~~~l~~i~~~~~L~~~giIi~E~~~~~~~~~~~~~~~~~~~k~YG~t~ 176 (182)
T d2fhpa1 124 AKQEIVSQLEKMLERQLLTNEAVIVCETDKTVKLPETIGTLKKTRETVYGITQ 176 (182)
T ss_dssp GGCCHHHHHHHHHHTTCEEEEEEEEEEEETTCCCCSEETTEEEEEEEEETTEE
T ss_pred hhhHHHHHHHHHHHCCCCCCCEEEEEEcCCCCCCccCCCceEEEEEEeeCCEE
Confidence 542 244555443 58999999985432221 23444555677898764
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=2.8e-17 Score=155.18 Aligned_cols=135 Identities=16% Similarity=0.072 Sum_probs=116.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
|||||.+|+.+|. |+.+|+++|+|+.+++.+++|+++|++. .++++++|+++++......+++||+|++||
T Consensus 153 ~~gtG~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ngl~-----~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~ 225 (318)
T d1wxxa2 153 FSYAGGFALHLAL--GFREVVAVDSSAEALRRAEENARLNGLG-----NVRVLEANAFDLLRRLEKEGERFDLVVLDPPA 225 (318)
T ss_dssp TCTTTHHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTTCT-----TEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CCCCcHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcCCC-----CcceeeccHHHHhhhhHhhhcCCCEEEEcCCc
Confidence 7999999998764 6779999999999999999999999984 678999999999988777788999999999
Q ss_pred CCCCH-----------HHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHH
Q 019408 79 FGSDS-----------SFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREA 147 (341)
Q Consensus 79 ygsp~-----------~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~A 147 (341)
|++.. ..+..++++|++||+|.+ +| |. +.+....+...+.+++
T Consensus 226 ~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~-~s-----cs--------------------~~~~~~~f~~~v~~a~ 279 (318)
T d1wxxa2 226 FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILAT-AS-----CS--------------------HHMTEPLFYAMVAEAA 279 (318)
T ss_dssp SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEE-EE-----CC--------------------TTSCHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEE-Ee-----CC--------------------cccCHHHHHHHHHHHH
Confidence 44321 245578899999999986 55 64 3377788899999999
Q ss_pred HhcCCcEEEEEecccCCCCeE
Q 019408 148 SAQGYHVSPLFSYYSYHGPVF 168 (341)
Q Consensus 148 a~~~~~i~Pl~s~~~~~dhy~ 168 (341)
.+.++.++.+....||.||++
T Consensus 280 ~~a~~~~~~~~~~~~~~DhP~ 300 (318)
T d1wxxa2 280 QDAHRLLRVVEKRGQPFDHPV 300 (318)
T ss_dssp HHTTCCEEEEEEECCCTTSCC
T ss_pred HHcCCCEEEEEecCCCCCCCC
Confidence 999999999999999999965
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=1.2e-17 Score=145.76 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=89.7
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||++||++++ +||++|+++|+|+.|++++++|++.++. +++++++.|+.+++.. .+++||+|++|| |
T Consensus 51 faGsG~~gieals-rGa~~v~~VE~~~~a~~~~k~N~~~~~~-----~~~~ii~~d~~~~l~~---~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 51 FAGSGALGLEALS-RYAAGATLIEMDRAVSQQLIKNLATLKA-----GNARVVNSNAMSFLAQ---KGTPHNIVFVDPPF 121 (183)
T ss_dssp TCTTCHHHHHHHH-TTCSEEEEECSCHHHHHHHHHHHHHTTC-----CSEEEECSCHHHHHSS---CCCCEEEEEECCSS
T ss_pred hccccceeeeEEe-cCcceeEEEEEeechhhHHHHHHhhccc-----cceeeeeecccccccc---cccccCEEEEcCcc
Confidence 7999999999999 8999999999999999999999998877 3678999999998864 356899999999 7
Q ss_pred CCC--HHHHHHHH--HhcccCCEEEEEec---CCCCCCCCCchhHHhhhcccc
Q 019408 80 GSD--SSFLRTVF--NAVKRDGLLYLTST---DGYSSGGHRPNNSLASYGAYI 125 (341)
Q Consensus 80 gsp--~~fld~al--~~v~~gGlL~vt~T---D~~~l~g~~~~~~~r~Yg~~~ 125 (341)
+.. ...++... ..++++|++++... +...+.........|+||.+.
T Consensus 122 ~~~~~~~~l~~l~~~~~L~~~~iIiiE~~~~~~~~~~~~~~~i~k~k~yG~t~ 174 (183)
T d2fpoa1 122 RRGLLEETINLLEDNGWLADEALIYVESEVENGLPTVPANWSLHREKVAGQVA 174 (183)
T ss_dssp STTTHHHHHHHHHHTTCEEEEEEEEEEEEGGGCSCCCCTTEEEEEEEEETTEE
T ss_pred ccchHHHHHHHHHHCCCCCCCeEEEEEecCcCCcccCCCCcEEEEEEEeCcEE
Confidence 752 12233222 24788999998532 222344455555668999764
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.68 E-value=2.2e-17 Score=139.69 Aligned_cols=117 Identities=13% Similarity=0.179 Sum_probs=89.9
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||.+||++++ +||++|+++|+|+.|++.+++|++.+++. ++++++++|+..++... .++||+|++|| |
T Consensus 22 ~~GtG~~~iea~~-rga~~v~~ve~~~~a~~~~~~n~~~~~~~----~~~~ii~~D~~~~l~~~---~~~fDiIf~DPPy 93 (152)
T d2esra1 22 FAGSGGLAIEAVS-RGMSAAVLVEKNRKAQAIIQDNIIMTKAE----NRFTLLKMEAERAIDCL---TGRFDLVFLDPPY 93 (152)
T ss_dssp TCTTCHHHHHHHH-TTCCEEEEECCCHHHHHHHHHHHHTTTCG----GGEEEECSCHHHHHHHB---CSCEEEEEECCSS
T ss_pred CCccCHHHHHHHH-hCcceeeeehhchhhhhhhhhhhhhcccc----cchhhhccccccccccc---ccccceeEechhh
Confidence 7999999999999 89999999999999999999999999885 67999999999998653 46899999999 5
Q ss_pred CCC--HHHHHHHH--HhcccCCEEEEEecCCCC---CCCCCchhHHhhhcccc
Q 019408 80 GSD--SSFLRTVF--NAVKRDGLLYLTSTDGYS---SGGHRPNNSLASYGAYI 125 (341)
Q Consensus 80 gsp--~~fld~al--~~v~~gGlL~vt~TD~~~---l~g~~~~~~~r~Yg~~~ 125 (341)
... .+.++... +.++++|++++++..... ..+.+.....++||.+.
T Consensus 94 ~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~~~~~~~~~~~~i~~~k~yG~t~ 146 (152)
T d2esra1 94 AKETIVATIEALAAKNLLSEQVMVVCETDKTVLLPKEIATLGIWKEKIYGISK 146 (152)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEEETTCCCCSEETTEEEEEEEEETTEE
T ss_pred ccchHHHHHHHHHHCCCcCCCeEEEEEeCCCCCCcccCCcceEEEEEecCCEE
Confidence 431 12333222 358899999986442222 23444555667888763
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.68 E-value=2.9e-17 Score=143.18 Aligned_cols=118 Identities=15% Similarity=0.192 Sum_probs=88.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||.+|||+++ +||++|+++|.|+.|++++++|++.+++. .....+.+.|+.+++.... ...+||+|++|| |
T Consensus 51 FaGsG~~glEalS-RGA~~v~fVE~~~~a~~~ik~Ni~~l~~~---~~~~~~~~~d~~~~l~~~~-~~~~fDlIFlDPPY 125 (183)
T d2ifta1 51 FAGSGSLGFEALS-RQAKKVTFLELDKTVANQLKKNLQTLKCS---SEQAEVINQSSLDFLKQPQ-NQPHFDVVFLDPPF 125 (183)
T ss_dssp TCTTCHHHHHHHH-TTCSEEEEECSCHHHHHHHHHHHHHTTCC---TTTEEEECSCHHHHTTSCC-SSCCEEEEEECCCS
T ss_pred ccCccceeeeeee-ecceeeEEeecccchhhhHhhHHhhhccc---ccccccccccccccccccc-cCCcccEEEechhH
Confidence 8999999999999 89999999999999999999999998874 2457788999999887543 345799999999 8
Q ss_pred CCCHHHHHHHH------HhcccCCEEEEEecCCCC--CCCCCchhHHhhhcccc
Q 019408 80 GSDSSFLRTVF------NAVKRDGLLYLTSTDGYS--SGGHRPNNSLASYGAYI 125 (341)
Q Consensus 80 gsp~~fld~al------~~v~~gGlL~vt~TD~~~--l~g~~~~~~~r~Yg~~~ 125 (341)
+. .+.+.++ ..++++|+++++..-... +-..+.....|+||.+.
T Consensus 126 ~~--~~~~~~l~~l~~~~~L~~~~liiiE~~~~~~~~~~~~~~~~k~kkyG~t~ 177 (183)
T d2ifta1 126 HF--NLAEQAISLLCENNWLKPNALIYVETEKDKPLITPENWTLLKEKTTGIVS 177 (183)
T ss_dssp SS--CHHHHHHHHHHHTTCEEEEEEEEEEEESSSCCCCCTTEEEEEEEEETTEE
T ss_pred hh--hhHHHHHHHHHHhCCcCCCcEEEEEecCCCCCCCCCCcEEEEEEecCCEE
Confidence 76 3333333 257889999985331111 12334445568899764
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.62 E-value=3.6e-15 Score=139.88 Aligned_cols=137 Identities=16% Similarity=0.008 Sum_probs=104.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
|||||.+||.+++ .|| +|+.+|+|+.|++.+++|+++|++. ..+++++++||+++|......+++||+|++||
T Consensus 140 f~~tG~~sl~aa~-~GA-~V~~VD~s~~al~~a~~N~~ln~~~---~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~ 214 (309)
T d2igta1 140 FGYTGVASLVAAA-AGA-EVTHVDASKKAIGWAKENQVLAGLE---QAPIRWICEDAMKFIQREERRGSTYDIILTDPPK 214 (309)
T ss_dssp TCTTCHHHHHHHH-TTC-EEEEECSCHHHHHHHHHHHHHHTCT---TSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCS
T ss_pred cCCCcHHHHHHHh-CCC-eEEEEeChHHHHHHHHHhhhhhccc---CCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCc
Confidence 7999999999988 688 6999999999999999999999984 24688999999999988877788999999999
Q ss_pred CCCC--------HH----HHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHH
Q 019408 79 FGSD--------SS----FLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVRE 146 (341)
Q Consensus 79 ygsp--------~~----fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~ 146 (341)
|+.. .. .++.+.+++++||.+.++++ |... +.-..+...+.++
T Consensus 215 f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~-----~s~~--------------------~s~~~~~~~~~~~ 269 (309)
T d2igta1 215 FGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA-----YSIR--------------------ASFYSMHELMRET 269 (309)
T ss_dssp EEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE-----CCTT--------------------SCHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec-----CCCC--------------------CCHHHHHHHHHHH
Confidence 5421 12 23466788998886554332 3211 3334566677778
Q ss_pred HHhcCCcEEEEEecccCCCCe
Q 019408 147 ASAQGYHVSPLFSYYSYHGPV 167 (341)
Q Consensus 147 Aa~~~~~i~Pl~s~~~~~dhy 167 (341)
+...+..++......++.||.
T Consensus 270 ~~~ag~~v~~~e~~~~e~g~p 290 (309)
T d2igta1 270 MRGAGGVVASGELVIREAGLD 290 (309)
T ss_dssp TTTSCSEEEEEEEEEECCCSS
T ss_pred HHhcCCcceeeEEecccCCCC
Confidence 888888888776666556654
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.59 E-value=2.2e-15 Score=129.74 Aligned_cols=113 Identities=17% Similarity=0.224 Sum_probs=85.6
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
|||||.+||++++ +|+ +|+++|+|+.+++.+++|++.|++. + ++...|+..++......+++||+|++|| |
T Consensus 49 ~~G~G~~~i~a~~-~ga-~vv~vD~~~~a~~~~~~N~~~~~~~----~--~v~~~~~d~~~~~~~~~~~~fD~If~DPPY 120 (171)
T d1ws6a1 49 FAGSGAVGLEAAS-EGW-EAVLVEKDPEAVRLLKENVRRTGLG----A--RVVALPVEVFLPEAKAQGERFTVAFMAPPY 120 (171)
T ss_dssp TCSSCHHHHHHHH-TTC-EEEEECCCHHHHHHHHHHHHHHTCC----C--EEECSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred ccccchhhhhhhh-ccc-hhhhcccCHHHHhhhhHHHHhhccc----c--ceeeeehhcccccccccCCccceeEEcccc
Confidence 7999999999998 688 5889999999999999999999984 3 4566777776666555667899999999 7
Q ss_pred CCC-HHHHHHHH--HhcccCCEEEEEecCCCCCCCCCchhHHhhhcccc
Q 019408 80 GSD-SSFLRTVF--NAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYI 125 (341)
Q Consensus 80 gsp-~~fld~al--~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~ 125 (341)
+.. ...+...+ ..+++||+++++..-. ...+....|+||.+.
T Consensus 121 ~~~~~~~l~~l~~~~ll~~~g~ivie~~~~----~~l~l~~~r~YG~t~ 165 (171)
T d1ws6a1 121 AMDLAALFGELLASGLVEAGGLYVLQHPKD----LYLPLGERRVYGENA 165 (171)
T ss_dssp TSCTTHHHHHHHHHTCEEEEEEEEEEEETT----SCCTTSEEEEETTEE
T ss_pred ccCHHHHHHHHHHcCCcCCCeEEEEEecCC----CCCCcCcEEecCCEE
Confidence 653 23344443 3689999999865322 123455679999864
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.54 E-value=5.5e-15 Score=135.59 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=81.9
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
|||+|.+||.+|+ .|+.+|+++|+||.|++.+++|+++|+++ ++++++++||++++. ...||.|++||..
T Consensus 115 ~aG~G~~~l~~a~-~~~~~V~avd~n~~a~~~~~~N~~~n~l~----~~v~~~~~D~~~~~~-----~~~~D~Ii~~~p~ 184 (260)
T d2frna1 115 FAGIGHLSLPIAV-YGKAKVIAIEKDPYTFKFLVENIHLNKVE----DRMSAYNMDNRDFPG-----ENIADRILMGYVV 184 (260)
T ss_dssp TCTTTTTHHHHHH-HTCCEEEEECCCHHHHHHHHHHHHHTTCT----TTEEEECSCTTTCCC-----CSCEEEEEECCCS
T ss_pred cceEcHHHHHHHH-hCCcEEEEecCCHHHHHHHHHHHHHhCCC----ceEEEEEcchHHhcc-----CCCCCEEEECCCC
Confidence 7999999999998 58779999999999999999999999995 679999999987643 3579999998855
Q ss_pred CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~ 103 (341)
.+..|++.|++.+++||+|.+..
T Consensus 185 ~~~~~l~~a~~~l~~gG~lh~~~ 207 (260)
T d2frna1 185 RTHEFIPKALSIAKDGAIIHYHN 207 (260)
T ss_dssp SGGGGHHHHHHHEEEEEEEEEEE
T ss_pred chHHHHHHHHhhcCCCCEEEEEe
Confidence 56699999999999999998643
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.07 E-value=2.9e-10 Score=97.86 Aligned_cols=93 Identities=23% Similarity=0.208 Sum_probs=79.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||||..++.+|. . +.+|+++|+|+++++.+++|++.+++. ++++++++|+.+.+.. ...||+|+++. .
T Consensus 41 GcGsG~~s~~lA~-~-~~~V~avD~~~~~l~~a~~n~~~~gl~----~~v~~~~gda~~~~~~----~~~~D~v~~~~~~ 110 (186)
T d1l3ia_ 41 GCGTGGVTLELAG-R-VRRVYAIDRNPEAISTTEMNLQRHGLG----DNVTLMEGDAPEALCK----IPDIDIAVVGGSG 110 (186)
T ss_dssp SCTTSHHHHHHHT-T-SSEEEEEESCHHHHHHHHHHHHHTTCC----TTEEEEESCHHHHHTT----SCCEEEEEESCCT
T ss_pred ECCeEcccccccc-c-ceEEEEecCCHHHHHHHHHHHHHcCCC----cceEEEECchhhcccc----cCCcCEEEEeCcc
Confidence 3899999999886 3 468999999999999999999999985 5789999999988754 35899999998 4
Q ss_pred CCCHHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+....+++.+.+.|++||.|.+..
T Consensus 111 ~~~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 111 GELQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp TCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccchHHHHHHHHHhCcCCEEEEEe
Confidence 445577888999999999998743
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.02 E-value=2.7e-10 Score=99.78 Aligned_cols=78 Identities=23% Similarity=0.324 Sum_probs=65.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
+||||.+||.+++ +|+.+|+++|+|+.+++.+++|++.+++ +.++.+.|+..+ .++||+|++|| |
T Consensus 54 g~GtG~l~i~a~~-~g~~~v~~vdi~~~~~~~a~~N~~~~~~------~~~~~~~d~~~~-------~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 54 GAGTGVLSYGALL-LGAKEVICVEVDKEAVDVLIENLGEFKG------KFKVFIGDVSEF-------NSRVDIVIMNPPF 119 (201)
T ss_dssp TCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHTGGGTT------SEEEEESCGGGC-------CCCCSEEEECCCC
T ss_pred cCcchHHHHHHHH-cCCCEEEEEcCcHHHHHHHHHHHHHcCC------CceEEECchhhh-------CCcCcEEEEcCcc
Confidence 5899999999887 7999999999999999999999998876 467889998643 45899999999 7
Q ss_pred CCC-----HHHHHHHHHh
Q 019408 80 GSD-----SSFLRTVFNA 92 (341)
Q Consensus 80 gsp-----~~fld~al~~ 92 (341)
+.. .+|+..++..
T Consensus 120 ~~~~~~~d~~~l~~~~~~ 137 (201)
T d1wy7a1 120 GSQRKHADRPFLLKAFEI 137 (201)
T ss_dssp SSSSTTTTHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHhh
Confidence 652 4677766654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.84 E-value=3e-09 Score=91.80 Aligned_cols=92 Identities=15% Similarity=0.188 Sum_probs=73.6
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||||..++.+++ . ..+|+++|+|+.+++.+++|++.|++. ..++++.++|.++.+ ..+.||+|+.|| |
T Consensus 60 GcG~G~~~~~la~-~-~~~v~~iD~s~~~i~~a~~n~~~~~l~---~~~i~~~~~d~~~~~-----~~~~fD~Ii~~~p~ 129 (194)
T d1dusa_ 60 GCGYGVIGIALAD-E-VKSTTMADINRRAIKLAKENIKLNNLD---NYDIRVVHSDLYENV-----KDRKYNKIITNPPI 129 (194)
T ss_dssp TCTTSHHHHHHGG-G-SSEEEEEESCHHHHHHHHHHHHHTTCT---TSCEEEEECSTTTTC-----TTSCEEEEEECCCS
T ss_pred eecCChhHHHHHh-h-ccccceeeeccccchhHHHHHHHhCCc---cceEEEEEcchhhhh-----ccCCceEEEEcccE
Confidence 4899999998876 3 468999999999999999999999884 235889999986533 246899999998 4
Q ss_pred CCC----HHHHHHHHHhcccCCEEEEE
Q 019408 80 GSD----SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 gsp----~~fld~al~~v~~gGlL~vt 102 (341)
-.. ..+++.+.+.|++||.|++.
T Consensus 130 ~~~~~~~~~~l~~~~~~LkpgG~l~i~ 156 (194)
T d1dusa_ 130 RAGKEVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp TTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EecchhhhhHHHHHHHhcCcCcEEEEE
Confidence 332 24567788999999999873
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.77 E-value=2.7e-09 Score=96.74 Aligned_cols=88 Identities=15% Similarity=0.049 Sum_probs=70.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||..+|.+++ .|+ +|+++|+|+.|++.+++|++.|++. .++.++|+...+. ..+||+|+..-+..
T Consensus 129 cGsG~l~i~aa~-~g~-~V~gvDis~~av~~A~~na~~n~~~------~~~~~~d~~~~~~-----~~~fD~V~ani~~~ 195 (254)
T d2nxca1 129 TGSGVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVR------PRFLEGSLEAALP-----FGPFDLLVANLYAE 195 (254)
T ss_dssp CTTSHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCC------CEEEESCHHHHGG-----GCCEEEEEEECCHH
T ss_pred cchhHHHHHHHh-cCC-EEEEEECChHHHHHHHHHHHHcCCc------eeEEecccccccc-----ccccchhhhccccc
Confidence 899999998887 675 6999999999999999999999983 3578999876543 35899999875321
Q ss_pred -CHHHHHHHHHhcccCCEEEEE
Q 019408 82 -DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 -p~~fld~al~~v~~gGlL~vt 102 (341)
...+++...+.|++||.|+++
T Consensus 196 ~l~~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 196 LHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE
T ss_pred cHHHHHHHHHHhcCCCcEEEEE
Confidence 235566777899999999973
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=7.4e-09 Score=97.30 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=75.8
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
+||+|.+|+-.|+ .+++|+++|+++.|++.+++|++.|++. +++++.+|+.+.+.........||+|++||
T Consensus 220 ycG~G~fsl~La~--~~~~V~gvE~~~~ai~~A~~na~~n~i~-----n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR 292 (358)
T d1uwva2 220 FCGMGNFTLPLAT--QAASVVGVEGVPALVEKGQQNARLNGLQ-----NVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR 292 (358)
T ss_dssp SCTTTTTHHHHHT--TSSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEECCTTSCCSSSGGGTTCCSEEEECCCT
T ss_pred cccccccchhccc--cccEEEeccCcHHHHHHHHHhHHhcccc-----cceeeecchhhhhhhhhhhhccCceEEeCCCC
Confidence 6999999998876 5689999999999999999999999994 788899999887765545566799999999
Q ss_pred CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
-| ..+.+...++ ++..-+++|.|
T Consensus 293 ~G-~~~~~~~l~~-~~~~~ivYVSC 315 (358)
T d1uwva2 293 AG-AAGVMQQIIK-LEPIRIVYVSC 315 (358)
T ss_dssp TC-CHHHHHHHHH-HCCSEEEEEES
T ss_pred cc-HHHHHHHHHH-cCCCEEEEEeC
Confidence 45 3455555444 46667999843
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.73 E-value=5.5e-09 Score=91.24 Aligned_cols=74 Identities=22% Similarity=0.203 Sum_probs=59.1
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
.||||+.||.+++ .|+++|+++|+|+.|++.+++|++ .+++.++|+.++ ..+||+|++|| |
T Consensus 56 GcGtG~l~i~a~~-~ga~~V~~vDid~~a~~~ar~N~~----------~~~~~~~D~~~l-------~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 56 GTGNGILACGSYL-LGAESVTAFDIDPDAIETAKRNCG----------GVNFMVADVSEI-------SGKYDTWIMNPPF 117 (197)
T ss_dssp TCTTCHHHHHHHH-TTBSEEEEEESCHHHHHHHHHHCT----------TSEEEECCGGGC-------CCCEEEEEECCCC
T ss_pred CCCCcHHHHHHHH-cCCCcccccccCHHHHHHHHHccc----------cccEEEEehhhc-------CCcceEEEeCccc
Confidence 4899999999888 799999999999999999999975 235678887532 35899999999 8
Q ss_pred CC-----CHHHHHHHHHh
Q 019408 80 GS-----DSSFLRTVFNA 92 (341)
Q Consensus 80 gs-----p~~fld~al~~ 92 (341)
|. ..+|++.+++.
T Consensus 118 g~~~~~~D~~fl~~a~~~ 135 (197)
T d1ne2a_ 118 GSVVKHSDRAFIDKAFET 135 (197)
T ss_dssp -------CHHHHHHHHHH
T ss_pred chhhhhchHHHHHHHHhc
Confidence 64 34678877664
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=8.3e-09 Score=94.48 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=74.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|||..||-.+++....+|+++|+|+.|++++++|++.+++. +++++++|.+..+ .+.+||+|+-+| |-
T Consensus 117 tGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~-----~v~~~~~d~~~~~-----~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 117 TGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-----NIHILQSDWFSAL-----AGQQFAMIVSNPPYI 186 (274)
T ss_dssp CTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-----SEEEECCSTTGGG-----TTCCEEEEEECCCCB
T ss_pred hhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc-----cceeeeccccccc-----CCCceeEEEecchhh
Confidence 799999999999866678999999999999999999999883 6889999976543 245899999999 64
Q ss_pred CCH----------------------------HHHHHHHHhcccCCEEEEEe
Q 019408 81 SDS----------------------------SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~----------------------------~fld~al~~v~~gGlL~vt~ 103 (341)
... .++..|-+.|++||.|.+.-
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi 237 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 237 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE
Confidence 211 13446667899999999843
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.44 E-value=4.7e-07 Score=83.97 Aligned_cols=99 Identities=21% Similarity=0.245 Sum_probs=74.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
.|.|...-+.++.....+|+++|++++.+++.++.+...+-..-+..+++++.+||+.+|.+. +++||+|++|+
T Consensus 86 ~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~---~~~yDvIi~D~~dp 162 (312)
T d1uira_ 86 GGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT---EERYDVVIIDLTDP 162 (312)
T ss_dssp CTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC---CCCEEEEEEECCCC
T ss_pred CCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc---CCcccEEEEeCCCc
Confidence 366766666665446789999999999999999998542110001257899999999999863 56899999886
Q ss_pred CCC--C------HHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGS--D------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygs--p------~~fld~al~~v~~gGlL~vt~ 103 (341)
++. + .+|++.+-+.|++||++++.+
T Consensus 163 ~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 163 VGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp BSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 442 1 368888889999999999755
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.44 E-value=6.1e-07 Score=79.54 Aligned_cols=97 Identities=18% Similarity=0.127 Sum_probs=78.9
Q ss_pred ccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc---CCcccEEEeC
Q 019408 2 CGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK---REFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~---~~~fDvIdlD 77 (341)
+++|.=++.+|.. +.-.+|+.+|.+++..+.+++|++..++. ++++++.+||.+.|.++... ...||+|++|
T Consensus 68 T~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~----~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiD 143 (227)
T d1susa1 68 VYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD----HKIDFREGPALPVLDEMIKDEKNHGSYDFIFVD 143 (227)
T ss_dssp CGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG----GGEEEEESCHHHHHHHHHHCGGGTTCBSEEEEC
T ss_pred chhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc----cceeeeehHHHHHHHHHHhccccCCceeEEEec
Confidence 4678778887764 22358999999999999999999999985 68999999999999887432 3479999999
Q ss_pred CCC-CCHHHHHHHHHhcccCCEEEEE
Q 019408 78 SFG-SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 78 Pyg-sp~~fld~al~~v~~gGlL~vt 102 (341)
--. .-..+++.++++|++||+|++-
T Consensus 144 a~k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 144 ADKDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp SCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred cchhhhHHHHHHHHhhcCCCcEEEEc
Confidence 622 1237889999999999999974
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.42 E-value=1.8e-07 Score=85.31 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=71.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
+|||+.++-.+.. ...+|+++|+|++|++++++|++.|++. +++.+.+.|.+..+.. ...+||+|+-+| |-
T Consensus 119 ~GsG~i~~~la~~-~~~~v~a~Dis~~Al~~A~~Na~~~~~~----~~~~i~~~~~~~~~~~---~~~~fDlIVsNPPYI 190 (271)
T d1nv8a_ 119 TGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVS----DRFFVRKGEFLEPFKE---KFASIEMILSNPPYV 190 (271)
T ss_dssp CTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCT----TSEEEEESSTTGGGGG---GTTTCCEEEECCCCB
T ss_pred eeeehhhhhhhhc-ccceeeechhhhhHHHHHHHHHHHcCCC----ceeEEeeccccccccc---ccCcccEEEEccccc
Confidence 7999999998864 4567999999999999999999999985 5677888888765533 235899999999 75
Q ss_pred CCHHHH----------------------HH-HHHhcccCCEEEEEe
Q 019408 81 SDSSFL----------------------RT-VFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~~fl----------------------d~-al~~v~~gGlL~vt~ 103 (341)
+..+.+ .. +-+.+++||++++.-
T Consensus 191 ~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei 236 (271)
T d1nv8a_ 191 KSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 236 (271)
T ss_dssp CGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred CcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence 422111 11 125689999998843
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.41 E-value=1.2e-07 Score=85.48 Aligned_cols=92 Identities=11% Similarity=0.097 Sum_probs=74.8
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||||.+++..|.-.| ..+|+++|++++.++.+++|++.++.. .++++.++|+.+.+ ....||.|++|.-.
T Consensus 94 ~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~----~nv~~~~~Di~~~~-----~~~~fD~V~ld~p~ 164 (250)
T d1yb2a1 94 VGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI----GNVRTSRSDIADFI-----SDQMYDAVIADIPD 164 (250)
T ss_dssp CTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC----TTEEEECSCTTTCC-----CSCCEEEEEECCSC
T ss_pred eeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCC----CceEEEEeeeeccc-----ccceeeeeeecCCc
Confidence 799999999887423 458999999999999999999976542 57889999987653 23579999999733
Q ss_pred CCHHHHHHHHHhcccCCEEEEEe
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~ 103 (341)
|..+++.+.+.|++||.|++..
T Consensus 165 -p~~~l~~~~~~LKpGG~lv~~~ 186 (250)
T d1yb2a1 165 -PWNHVQKIASMMKPGSVATFYL 186 (250)
T ss_dssp -GGGSHHHHHHTEEEEEEEEEEE
T ss_pred -hHHHHHHHHHhcCCCceEEEEe
Confidence 4568999999999999999743
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=2.3e-07 Score=81.72 Aligned_cols=91 Identities=16% Similarity=0.079 Sum_probs=73.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|+|..++.+++ .+..+|+++|+|+..++.++++++..+. .+.++..|+..+.... ....||.|+.|++.+
T Consensus 62 cG~G~~a~~~a~-~~~~~v~~id~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~fD~i~fD~~~~ 132 (229)
T d1zx0a1 62 FGMAIAASKVQE-APIDEHWIIECNDGVFQRLRDWAPRQTH------KVIPLKGLWEDVAPTL--PDGHFDGILYDTYPL 132 (229)
T ss_dssp CTTSHHHHHHHT-SCEEEEEEEECCHHHHHHHHHHGGGCSS------EEEEEESCHHHHGGGS--CTTCEEEEEECCCCC
T ss_pred ccchHHHHHHHH-cCCCeEEEeCCCHHHHHHHHHHhhhccc------cccccccccccccccc--ccccccceeeccccc
Confidence 699999988887 5667899999999999999999876543 5677889998876654 345899999998543
Q ss_pred C---------HHHHHHHHHhcccCCEEEE
Q 019408 82 D---------SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 p---------~~fld~al~~v~~gGlL~v 101 (341)
. ..++..+.+.|++||+|.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 133 SEETWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp BGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred ccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence 2 2466778899999999986
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=7e-07 Score=78.69 Aligned_cols=96 Identities=14% Similarity=0.101 Sum_probs=77.3
Q ss_pred ccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc--CCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK--REFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~--~~~fDvIdlDP 78 (341)
+++|.=++-+|... .-.+|+.+|++++..+.+++|++..++. +++++..+||.+.+.+.... ...||+||+|-
T Consensus 68 t~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~----~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~ 143 (219)
T d2avda1 68 TFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE----HKIDLRLKPALETLDELLAAGEAGTFDVAVVDA 143 (219)
T ss_dssp CTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT----TTEEEEESCHHHHHHHHHHTTCTTCEEEEEECS
T ss_pred chhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc----ceEEEEEeehhhcchhhhhhcccCCccEEEEeC
Confidence 46777777777631 1258999999999999999999999985 68999999999998765432 35799999996
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEE
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~v 101 (341)
...-..+++.+++.|++||+|++
T Consensus 144 dk~~y~~~~~~~~~lL~~GGvii~ 167 (219)
T d2avda1 144 DKENCSAYYERCLQLLRPGGILAV 167 (219)
T ss_dssp CSTTHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhcCCcEEEE
Confidence 22223678899999999999997
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.33 E-value=4.1e-07 Score=79.85 Aligned_cols=96 Identities=10% Similarity=0.147 Sum_probs=74.7
Q ss_pred ccccHhHHHHhhhC-CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc--CCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEA-KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK--REFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~-ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~--~~~fDvIdlDP 78 (341)
+|+|.-++.+|... ...+|+.+|++++..+.+++|++..++. ++++++.+|+.++|.++... ...||+|++|-
T Consensus 65 t~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~----~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~ 140 (214)
T d2cl5a1 65 AYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQ----DKVTILNGASQDLIPQLKKKYDVDTLDMVFLDH 140 (214)
T ss_dssp CTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCG----GGEEEEESCHHHHGGGHHHHSCCCCEEEEEECS
T ss_pred cCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCC----ccceeeeccccccccchhhcccccccceeeecc
Confidence 46899889888642 2368999999999999999999999985 67999999999998765432 34799999996
Q ss_pred CCCC---HHHHHHHHHhcccCCEEEE
Q 019408 79 FGSD---SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 79 ygsp---~~fld~al~~v~~gGlL~v 101 (341)
.... .-.+..+++.|++||+|.+
T Consensus 141 ~~~~~~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 141 WKDRYLPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cccccccHHHHHHHhCccCCCcEEEE
Confidence 3221 1124567788999999875
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.33 E-value=8e-07 Score=80.92 Aligned_cols=97 Identities=21% Similarity=0.156 Sum_probs=75.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC--
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG-- 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg-- 80 (341)
|.|...-+.++..+..+|+++|||++.+++.++.+..+.-. -+..+++++.+||..+|.+. +++||+|++|++.
T Consensus 85 G~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~-~~d~r~~i~~~D~~~~l~~~---~~~yDvIi~D~~~p~ 160 (274)
T d1iy9a_ 85 GDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK-LDDPRVDVQVDDGFMHIAKS---ENQYDVIMVDSTEPV 160 (274)
T ss_dssp TTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT-TTSTTEEEEESCSHHHHHTC---CSCEEEEEESCSSCC
T ss_pred CCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhccc-ccCCCeEEEechHHHHHhhc---CCCCCEEEEcCCCCC
Confidence 56666666665457899999999999999999988754311 12357899999999999753 5689999999843
Q ss_pred -C-----CHHHHHHHHHhcccCCEEEEEe
Q 019408 81 -S-----DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 -s-----p~~fld~al~~v~~gGlL~vt~ 103 (341)
. ..+|.+.+-+.|+++|++++.+
T Consensus 161 ~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 161 GPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp SCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 1 2378888899999999999754
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.32 E-value=1.7e-06 Score=75.33 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=78.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEE---eCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLID---IDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvId---lDP 78 (341)
||+|...+..|+..--..++++|+++..+..+.++++.+++. ++.++++||..++... ....+|.|+ .||
T Consensus 38 cG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-----Nv~~~~~Da~~l~~~~--~~~~~d~v~i~fp~P 110 (204)
T d2fcaa1 38 TGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-----NVKLLNIDADTLTDVF--EPGEVKRVYLNFSDP 110 (204)
T ss_dssp CTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-----SEEEECCCGGGHHHHC--CTTSCCEEEEESCCC
T ss_pred ecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-----Cchhcccchhhhhccc--Cchhhhccccccccc
Confidence 799999999998633357999999999999999999999883 7899999999877533 345678554 577
Q ss_pred CCCC---------HHHHHHHHHhcccCCEEEEEecCC
Q 019408 79 FGSD---------SSFLRTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 79 ygsp---------~~fld~al~~v~~gGlL~vt~TD~ 106 (341)
+-+. ..|++...+.|++||.|.+ +||-
T Consensus 111 ~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i-~TD~ 146 (204)
T d2fcaa1 111 WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF-KTDN 146 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE-EESC
T ss_pred cchhhhcchhhhHHHHHHHHHHhCCCCcEEEE-EECC
Confidence 5332 3799999999999999998 6765
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.29 E-value=4.4e-07 Score=83.78 Aligned_cols=89 Identities=19% Similarity=0.157 Sum_probs=71.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||+.++.+|+ .||++|+++|.|+. ...+++|++.|++. ++++++++|+.++ ....++||+|+.++++.
T Consensus 42 cG~G~ls~~aa~-~Ga~~V~avd~s~~-~~~a~~~~~~n~~~----~~v~~~~~~~~~~----~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 42 SGTGILCMFAAK-AGARKVIGIECSSI-SDYAVKIVKANKLD----HVVTIIKGKVEEV----ELPVEKVDIIISEWMGY 111 (316)
T ss_dssp CTTSHHHHHHHH-TTCSEEEEEECSTT-HHHHHHHHHHTTCT----TTEEEEESCTTTC----CCSSSCEEEEEECCCBB
T ss_pred cCCcHHHHHHHH-hCCCEEEEEcCcHH-HhhhhhHHHHhCCc----cccceEeccHHHc----ccccceeEEEeeeeeee
Confidence 799999999998 79999999999986 47778899999885 6789999998764 23456899999988432
Q ss_pred -------CHHHHHHHHHhcccCCEEE
Q 019408 82 -------DSSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 82 -------p~~fld~al~~v~~gGlL~ 100 (341)
...+++..-+.|++||.+.
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 1245555567999999987
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.27 E-value=7.2e-07 Score=82.07 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=71.8
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC--
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG-- 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg-- 80 (341)
|.|...-+.++..+..+|+++|+|++.+++.++-+..+.-. -+..+++++.+||.++|.+. +++||+|++|++-
T Consensus 99 G~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~-~~d~rv~v~~~Da~~~l~~~---~~~yDvIi~D~~dp~ 174 (295)
T d1inla_ 99 GDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCG-FDDPRAEIVIANGAEYVRKF---KNEFDVIIIDSTDPT 174 (295)
T ss_dssp TTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHGGGC---SSCEEEEEEEC----
T ss_pred CchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhccc-ccCCCcEEEhhhHHHHHhcC---CCCCCEEEEcCCCCC
Confidence 55655444444346789999999999999999987764210 01257899999999999753 5689999999742
Q ss_pred -CC------HHHHHHHHHhcccCCEEEEEe
Q 019408 81 -SD------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 -sp------~~fld~al~~v~~gGlL~vt~ 103 (341)
.| .+|++.+-+.|++||++++.+
T Consensus 175 ~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 175 AGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp ------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 11 378888899999999999754
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=4.4e-07 Score=80.19 Aligned_cols=92 Identities=13% Similarity=0.095 Sum_probs=74.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe-CC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI-DS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl-DP-- 78 (341)
||+|..++.++.+.|+ +|+.+|+|+..++..++|++.+++. +++++..+|+..+. ...+||+|+. .-
T Consensus 42 CG~G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~----~~v~~~~~d~~~~~-----~~~~fD~v~~~~~~~ 111 (245)
T d1nkva_ 42 SGSGEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVS----ERVHFIHNDAAGYV-----ANEKCDVAACVGATW 111 (245)
T ss_dssp CTTCHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEESCCTTCC-----CSSCEEEEEEESCGG
T ss_pred CCCCHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhcc----ccchhhhhHHhhcc-----ccCceeEEEEEehhh
Confidence 7999998888765564 7999999999999999999999884 57899999997642 2457999874 22
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+..++..+.+.|++||.+.++.
T Consensus 112 ~~~d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 112 IAGGFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp GTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence 2224588899999999999999864
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.26 E-value=1.7e-06 Score=78.71 Aligned_cols=97 Identities=21% Similarity=0.185 Sum_probs=72.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCC-----CCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIER-----GSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI 76 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~-----~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl 76 (341)
.|.|...-++++ .+..+|+++|+|++.+++.++-+..++- ...+..+++++.+||..+++. .++||+|++
T Consensus 81 ~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~----~~~yDvIi~ 155 (276)
T d1mjfa_ 81 GGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN----NRGFDVIIA 155 (276)
T ss_dssp CTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH----CCCEEEEEE
T ss_pred CCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc----cCCCCEEEE
Confidence 366666655555 5678999999999999999986543210 000125789999999999974 357999999
Q ss_pred CCCCC---C-----HHHHHHHHHhcccCCEEEEEe
Q 019408 77 DSFGS---D-----SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 77 DPygs---p-----~~fld~al~~v~~gGlL~vt~ 103 (341)
|+|.. + .+|.+.+-+.|++||++++-+
T Consensus 156 D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 156 DSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp ECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 98642 2 368888889999999998755
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=9e-07 Score=81.26 Aligned_cols=89 Identities=21% Similarity=0.209 Sum_probs=67.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||+.++.+|+ .||++|+++|.|+.+.. ++++++.|+.. ++++++++|+.++ ....++||+|+.++++.
T Consensus 44 cG~G~lsl~aa~-~Ga~~V~aid~s~~~~~-a~~~~~~~~~~----~~i~~~~~~~~~l----~~~~~~~D~Ivse~~~~ 113 (311)
T d2fyta1 44 CGTGILSMFAAK-AGAKKVLGVDQSEILYQ-AMDIIRLNKLE----DTITLIKGKIEEV----HLPVEKVDVIISEWMGY 113 (311)
T ss_dssp CTTSHHHHHHHH-TTCSEEEEEESSTHHHH-HHHHHHHTTCT----TTEEEEESCTTTS----CCSCSCEEEEEECCCBT
T ss_pred CCCCHHHHHHHH-cCCCEEEEEeCHHHHHH-HHHHHHHhCCC----ccceEEEeeHHHh----cCccccceEEEEeeeee
Confidence 799999999998 79999999999998865 55566667764 6789999998764 23346899999988443
Q ss_pred -------CHHHHHHHHHhcccCCEEE
Q 019408 82 -------DSSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 82 -------p~~fld~al~~v~~gGlL~ 100 (341)
...+++..-+.|++||.+.
T Consensus 114 ~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 114 FLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred ecccccccHHHHHHHHhcCCCCcEEe
Confidence 1123333346799999987
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.21 E-value=1.1e-06 Score=76.97 Aligned_cols=88 Identities=19% Similarity=0.272 Sum_probs=69.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe--CC-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI--DS- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl--DP- 78 (341)
||||..++.++. .|+ +|+++|+|+..++.+++|++.++. +++++++|+.++ .. +++||+|+. .-
T Consensus 50 cGtG~~~~~l~~-~~~-~v~gvD~s~~mi~~a~~~~~~~~~------~i~~~~~d~~~l----~~-~~~fD~I~~~~~~~ 116 (251)
T d1wzna1 50 CGTGIPTLELAE-RGY-EVVGLDLHEEMLRVARRKAKERNL------KIEFLQGDVLEI----AF-KNEFDAVTMFFSTI 116 (251)
T ss_dssp CTTCHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTC------CCEEEESCGGGC----CC-CSCEEEEEECSSGG
T ss_pred CCCCccchhhcc-cce-EEEEEeeccccccccccccccccc------cchheehhhhhc----cc-ccccchHhhhhhhh
Confidence 799999999887 576 799999999999999999998765 467899998764 12 358998875 33
Q ss_pred -CCCC---HHHHHHHHHhcccCCEEEEE
Q 019408 79 -FGSD---SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 -ygsp---~~fld~al~~v~~gGlL~vt 102 (341)
+.++ ..++..+-+.|++||++.+.
T Consensus 117 ~~~~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 117 MYFDEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 2221 24667778899999999984
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=1.2e-06 Score=81.20 Aligned_cols=89 Identities=18% Similarity=0.140 Sum_probs=69.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||+.++.+|+ .||++|+++|.|+ .++.++++++.|+.. ++++++++|+.++ ....++||+|+.++++.
T Consensus 47 cGtG~ls~~aa~-~Ga~~V~avd~s~-~~~~a~~~~~~~~~~----~~i~~i~~~~~~l----~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 47 CGTGILSMFAAK-HGAKHVIGVDMSS-IIEMAKELVELNGFS----DKITLLRGKLEDV----HLPFPKVDIIISEWMGY 116 (328)
T ss_dssp CTTSHHHHHHHH-TCCSEEEEEESST-HHHHHHHHHHHTTCT----TTEEEEESCTTTS----CCSSSCEEEEEECCCBT
T ss_pred CCCCHHHHHHHH-hCCCEEEEEeCCH-HHHHHHHHHHHhCcc----ccceEEEeehhhc----cCcccceeEEEEEecce
Confidence 799999999988 7999999999997 457889999989875 6788999998754 23457899999988432
Q ss_pred -------CHHHHHHHHHhcccCCEEE
Q 019408 82 -------DSSFLRTVFNAVKRDGLLY 100 (341)
Q Consensus 82 -------p~~fld~al~~v~~gGlL~ 100 (341)
....+.+.-+.|++||++.
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccchhHHHHHHHHHhccCCCeEEE
Confidence 1123333347899999997
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=98.21 E-value=1.7e-06 Score=74.92 Aligned_cols=91 Identities=19% Similarity=0.238 Sum_probs=72.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..++.++. .| .+|+++|+|+..++.++++++.++. .++++.++|+.++ ......||+|..-=
T Consensus 24 cG~G~~~~~l~~-~~-~~v~gvD~s~~~i~~A~~~~~~~~~-----~~i~~~~~d~~~l----~~~~~~fD~v~~~~~l~ 92 (231)
T d1vl5a_ 24 TGGGHVANAFAP-FV-KKVVAFDLTEDILKVARAFIEGNGH-----QQVEYVQGDAEQM----PFTDERFHIVTCRIAAH 92 (231)
T ss_dssp CTTCHHHHHHGG-GS-SEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEECCC-CC----CSCTTCEEEEEEESCGG
T ss_pred ccCcHHHHHHHH-hC-CEEEEEECCHHHHhhhhhccccccc-----ccccccccccccc----ccccccccccccccccc
Confidence 799999998886 56 4799999999999999999998887 3678899998763 22346899996432
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
+..+..++..+.+.|++||.|.+..
T Consensus 93 ~~~d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 93 HFPNPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 2345688999999999999988743
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=1.5e-06 Score=79.49 Aligned_cols=97 Identities=20% Similarity=0.220 Sum_probs=71.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC---
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF--- 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy--- 79 (341)
|.|...=+.++..+..+|+++|++++.+++.++-+..+.-. .+..+++++.+||+.+|... +++||+|++|+|
T Consensus 88 G~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~-~~d~rv~i~~~Da~~~l~~~---~~~yDvIi~D~~~p~ 163 (285)
T d2o07a1 88 GDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIG-YSSSKLTLHVGDGFEFMKQN---QDAFDVIITDSSDPM 163 (285)
T ss_dssp TTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHHHTC---SSCEEEEEEECC---
T ss_pred CchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccc-cCCCCceEEEccHHHHHhcC---CCCCCEEEEcCCCCC
Confidence 55555555554357899999999999999999877654210 01257899999999999753 568999999974
Q ss_pred CCC-----HHHHHHHHHhcccCCEEEEEe
Q 019408 80 GSD-----SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 gsp-----~~fld~al~~v~~gGlL~vt~ 103 (341)
+.+ .+|.+.+-+.|++||++++.+
T Consensus 164 ~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 164 GPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp --------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 222 266778888999999999754
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.18 E-value=1.8e-06 Score=79.97 Aligned_cols=97 Identities=21% Similarity=0.165 Sum_probs=71.2
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC--
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG-- 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg-- 80 (341)
|.|...-+.++...+.+|+++|+|+..+++.++-+..+.-. -+..+++++.+||..+|++. +++||+|++|++-
T Consensus 116 G~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~-~~dprv~i~i~Da~~~l~~~---~~~yDvII~D~~dp~ 191 (312)
T d2b2ca1 116 GDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCG-FSHPKLDLFCGDGFEFLKNH---KNEFDVIITDSSDPV 191 (312)
T ss_dssp TTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGG-GGCTTEEEECSCHHHHHHHC---TTCEEEEEECCC---
T ss_pred CchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccc-cCCCCeEEEEchHHHHHHhC---CCCCCEEEEcCCCCC
Confidence 55655555555356789999999999999999977543210 01257899999999999763 5689999999742
Q ss_pred -CC-----HHHHHHHHHhcccCCEEEEEe
Q 019408 81 -SD-----SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 -sp-----~~fld~al~~v~~gGlL~vt~ 103 (341)
.+ .+|.+.+-+.|++||++++.+
T Consensus 192 ~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 192 GPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp ----------HHHHHHHHEEEEEEEEEEC
T ss_pred CcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 22 267778888999999999855
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.17 E-value=2.9e-06 Score=77.75 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=73.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC-
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS- 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs- 81 (341)
|.|...-+.++..+.++|+++|+|++.+++.++-+..+.-. .+..+++++.+|+++++.+. .+++||+|++|.|..
T Consensus 90 G~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~-~~~~r~~i~~~Da~~~l~~~--~~~~yDvIi~D~~dp~ 166 (290)
T d1xj5a_ 90 GDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIG-YEDPRVNLVIGDGVAFLKNA--AEGSYDAVIVDSSDPI 166 (290)
T ss_dssp SSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGSTTEEEEESCHHHHHHTS--CTTCEEEEEECCCCTT
T ss_pred CchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhcc-ccCCCcEEEEccHHHHHhhc--cccCccEEEEcCCCCC
Confidence 55555545555457789999999999999999977654210 01257899999999999764 235899999998531
Q ss_pred --C-----HHHHHHHHHhcccCCEEEEEe
Q 019408 82 --D-----SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 --p-----~~fld~al~~v~~gGlL~vt~ 103 (341)
+ .+|.+.+-+.|++||++++.+
T Consensus 167 ~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 167 GPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp SGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 1 368888889999999999854
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.16 E-value=2.9e-06 Score=76.77 Aligned_cols=93 Identities=14% Similarity=0.141 Sum_probs=75.5
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+|||..++..|...| ..+|+.+|+|++.++.+++|++..++. +.+.+...|+... .....||.|++|--.
T Consensus 112 ~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~----~~v~~~~~d~~~~-----~~~~~~D~V~~d~p~ 182 (266)
T d1o54a_ 112 VGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI----ERVTIKVRDISEG-----FDEKDVDALFLDVPD 182 (266)
T ss_dssp CTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG----GGEEEECCCGGGC-----CSCCSEEEEEECCSC
T ss_pred CCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc----cCcEEEecccccc-----ccccceeeeEecCCC
Confidence 799999998887534 358999999999999999999998874 5778888886432 224579999999733
Q ss_pred CCHHHHHHHHHhcccCCEEEEEec
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~T 104 (341)
|..+++.+.+.||+||.|++.+.
T Consensus 183 -p~~~l~~~~~~LKpGG~lv~~~P 205 (266)
T d1o54a_ 183 -PWNYIDKCWEALKGGGRFATVCP 205 (266)
T ss_dssp -GGGTHHHHHHHEEEEEEEEEEES
T ss_pred -HHHHHHHHHhhcCCCCEEEEEeC
Confidence 55789999999999999998654
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.13 E-value=5.2e-06 Score=72.12 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=78.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEE---eCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLID---IDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvId---lDP 78 (341)
||+|-..++.|+...-..++.+|+++..+..+.++++.++++ ++.++++||..++.. .....+|.|+ .||
T Consensus 40 cG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~-----Ni~~~~~da~~l~~~--~~~~~~~~i~i~fPdP 112 (204)
T d1yzha1 40 SGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVP-----NIKLLWVDGSDLTDY--FEDGEIDRLYLNFSDP 112 (204)
T ss_dssp CTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCS-----SEEEEECCSSCGGGT--SCTTCCSEEEEESCCC
T ss_pred ccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccc-----cceeeecCHHHHhhh--ccCCceehhccccccc
Confidence 799999999999733457999999999999999999988883 689999999887642 2345678654 488
Q ss_pred CCCC---------HHHHHHHHHhcccCCEEEEEecCC
Q 019408 79 FGSD---------SSFLRTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 79 ygsp---------~~fld~al~~v~~gGlL~vt~TD~ 106 (341)
+-+. .+|++...+.|++||.|.+ +||-
T Consensus 113 w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i-~TD~ 148 (204)
T d1yzha1 113 WPKKRHEKRRLTYKTFLDTFKRILPENGEIHF-KTDN 148 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE-EESC
T ss_pred ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE-EECC
Confidence 5432 4899999999999999998 7874
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.10 E-value=1.5e-06 Score=76.44 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=69.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe--CCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI--DSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl--DPy 79 (341)
||+|..++.+++ .|. +|+++|.|+..++.++++++.++. +++++++|+..+- ..++||+|+. +.+
T Consensus 46 CG~G~~~~~l~~-~g~-~v~GvD~S~~ml~~A~~~~~~~~~------~v~~~~~d~~~~~-----~~~~fD~i~~~~~~~ 112 (246)
T d1y8ca_ 46 CGTGNLTENLCP-KFK-NTWAVDLSQEMLSEAENKFRSQGL------KPRLACQDISNLN-----INRKFDLITCCLDST 112 (246)
T ss_dssp CTTSTTHHHHGG-GSS-EEEEECSCHHHHHHHHHHHHHTTC------CCEEECCCGGGCC-----CSCCEEEEEECTTGG
T ss_pred CcCCHHHHHHHH-hCC-ccEeeccchhhhhhccccccccCc------cceeeccchhhhc-----ccccccccceeeeee
Confidence 799999999987 575 799999999999999999987765 4678999987541 2458998875 553
Q ss_pred C---CC---HHHHHHHHHhcccCCEEEEE
Q 019408 80 G---SD---SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 g---sp---~~fld~al~~v~~gGlL~vt 102 (341)
+ ++ ..++..+-+.|++||++++.
T Consensus 113 ~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 2 22 24677778899999999974
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=98.09 E-value=2.5e-06 Score=76.75 Aligned_cols=94 Identities=10% Similarity=0.007 Sum_probs=75.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe-CC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI-DS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl-DP-- 78 (341)
||+|..++..+++.|+ +|+++|+|+..++.++++++..++. +++++.++|+.++ ......||+|.. +-
T Consensus 76 cG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~----~~v~~~~~d~~~l----~~~~~sfD~V~~~~~l~ 146 (282)
T d2o57a1 76 AGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLA----DNITVKYGSFLEI----PCEDNSYDFIWSQDAFL 146 (282)
T ss_dssp CTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCT----TTEEEEECCTTSC----SSCTTCEEEEEEESCGG
T ss_pred CCCcHHHhhhhccCCc-EEEEEeccchhhhhhhccccccccc----ccccccccccccc----cccccccchhhccchhh
Confidence 7999999998875454 7999999999999999999988885 5789999998753 223468998855 33
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+..+..++..+.+.|++||.|.++..
T Consensus 147 h~~d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 147 HSPDKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 23456788899999999999998643
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.07 E-value=9e-07 Score=78.58 Aligned_cols=96 Identities=18% Similarity=0.137 Sum_probs=71.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|...+.++. .|..+|+++|+|+.+++.+++.++.++.. .++.+.++|+.... ...++.||+|..-=
T Consensus 33 CG~G~~~~~~~~-~~~~~v~GiD~S~~~l~~A~~r~~~~~~~----~~v~f~~~D~~~~~---~~~~~~fD~V~~~~~l~ 104 (252)
T d1ri5a_ 33 CGKGGDLLKYER-AGIGEYYGVDIAEVSINDARVRARNMKRR----FKVFFRAQDSYGRH---MDLGKEFDVISSQFSFH 104 (252)
T ss_dssp CTTTTTHHHHHH-HTCSEEEEEESCHHHHHHHHHHHHTSCCS----SEEEEEESCTTTSC---CCCSSCEEEEEEESCGG
T ss_pred ccCcHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHhcCCC----cceEEEEcchhhhc---ccccccceEEEEcceee
Confidence 799998888887 58889999999999999999988866653 46788999985331 11245799996532
Q ss_pred C-CCCH----HHHHHHHHhcccCCEEEEEecC
Q 019408 79 F-GSDS----SFLRTVFNAVKRDGLLYLTSTD 105 (341)
Q Consensus 79 y-gsp~----~fld~al~~v~~gGlL~vt~TD 105 (341)
| -.+. .++..+-+.|++||++.+|..|
T Consensus 105 ~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 105 YAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 1 1122 3555666889999999987653
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=98.05 E-value=5e-06 Score=72.49 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=72.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC-C--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID-S-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD-P-- 78 (341)
||||..++.++. .+ .+|+++|+|+..++.++++++.+++. ++.+.++|+.++ ......||+|..= -
T Consensus 25 cGtG~~~~~la~-~~-~~v~gvD~S~~~l~~A~~~~~~~~~~-----~~~~~~~d~~~~----~~~~~~fD~v~~~~~l~ 93 (234)
T d1xxla_ 25 AGAGHTALAFSP-YV-QECIGVDATKEMVEVASSFAQEKGVE-----NVRFQQGTAESL----PFPDDSFDIITCRYAAH 93 (234)
T ss_dssp CTTSHHHHHHGG-GS-SEEEEEESCHHHHHHHHHHHHHHTCC-----SEEEEECBTTBC----CSCTTCEEEEEEESCGG
T ss_pred CcCcHHHHHHHH-hC-CeEEEEeCChhhhhhhhhhhcccccc-----cccccccccccc----cccccccceeeeeceee
Confidence 799999999987 56 47999999999999999999998873 688899998753 1234689988752 2
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEE
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt 102 (341)
+..+..++..+.+.|++||.++++
T Consensus 94 ~~~d~~~~l~~~~r~LkpgG~~~~~ 118 (234)
T d1xxla_ 94 HFSDVRKAVREVARVLKQDGRFLLV 118 (234)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCHHHHHHHHHHeeCCCcEEEEE
Confidence 223567888999999999998874
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.00 E-value=7e-06 Score=74.15 Aligned_cols=96 Identities=18% Similarity=0.163 Sum_probs=74.0
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+|||.+++..|..-| ..+|+.+|++++.++.+++|++..... ..+++++.++|+.+. ......||.|++|= .
T Consensus 105 ~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~--~~~nv~~~~~d~~~~----~~~~~~fDaV~ldl-p 177 (264)
T d1i9ga_ 105 AGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ--PPDNWRLVVSDLADS----ELPDGSVDRAVLDM-L 177 (264)
T ss_dssp CTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS--CCTTEEEECSCGGGC----CCCTTCEEEEEEES-S
T ss_pred cCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC--CCceEEEEecccccc----cccCCCcceEEEec-C
Confidence 699999999988534 358999999999999999999864211 114678889998642 22346799999994 2
Q ss_pred CCHHHHHHHHHhcccCCEEEEEec
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~T 104 (341)
.|..+++.+.+.||+||.|++.+.
T Consensus 178 ~P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 178 APWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CHHHHHHHHHhccCCCCEEEEEeC
Confidence 355778999999999999997553
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=2.1e-06 Score=74.64 Aligned_cols=91 Identities=16% Similarity=0.141 Sum_probs=71.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..+..+++ .+..+|+++|+|+.+++.++++++..+. ..+++.++|+.++- ...+.||+|..-- +.
T Consensus 69 cG~G~~~~~l~~-~~~~~v~~vD~s~~~l~~ak~~~~~~~~-----~~~~f~~~d~~~~~----~~~~~fD~I~~~~~l~ 138 (222)
T d2ex4a1 69 AGIGRITKRLLL-PLFREVDMVDITEDFLVQAKTYLGEEGK-----RVRNYFCCGLQDFT----PEPDSYDVIWIQWVIG 138 (222)
T ss_dssp CTTTHHHHHTTT-TTCSEEEEEESCHHHHHHHHHHTGGGGG-----GEEEEEECCGGGCC----CCSSCEEEEEEESCGG
T ss_pred cCCCHhhHHHHH-hcCCEEEEeecCHHHhhccccccccccc-----cccccccccccccc----cccccccccccccccc
Confidence 799999888877 4778999999999999999999987765 35688999988642 2356899887754 21
Q ss_pred -CC----HHHHHHHHHhcccCCEEEEE
Q 019408 81 -SD----SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 -sp----~~fld~al~~v~~gGlL~vt 102 (341)
-+ ..++..+-+.|++||.+.++
T Consensus 139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~ 165 (222)
T d2ex4a1 139 HLTDQHLAEFLRRCKGSLRPNGIIVIK 165 (222)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cchhhhhhhHHHHHHHhcCCcceEEEE
Confidence 12 24677778899999999985
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=2.8e-06 Score=76.03 Aligned_cols=73 Identities=11% Similarity=0.044 Sum_probs=57.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHh--hhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSEC--YLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~--~~~~~~fDvIdlDP 78 (341)
+|||..++-.+++....+|+++|+|++|++++++|++.|++. +++.+.+.+....+... .....+||+|+-.|
T Consensus 70 tGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~----~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNP 144 (250)
T d2h00a1 70 TGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS----DLIKVVKVPQKTLLMDALKEESEIIYDFCMCNP 144 (250)
T ss_dssp CTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT----TTEEEEECCTTCSSTTTSTTCCSCCBSEEEECC
T ss_pred CCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCC----cceeeeeeccHHhhhhhhhhcccCceeEEEecC
Confidence 699999999998743457999999999999999999999985 67787776655433221 11235799999999
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=97.94 E-value=6.8e-06 Score=69.95 Aligned_cols=90 Identities=19% Similarity=0.118 Sum_probs=70.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++.++. +|. +|+++|+|+.+++.++++++..+++ .+++...|+..+- ..+.||+|+.-- +.
T Consensus 39 cG~G~~~~~la~-~g~-~v~gvD~s~~~l~~a~~~~~~~~~~-----~~~~~~~d~~~~~-----~~~~fD~I~~~~~~~ 106 (198)
T d2i6ga1 39 CGNGRNSLYLAA-NGY-DVTAWDKNPASMANLERIKAAEGLD-----NLQTDLVDLNTLT-----FDGEYDFILSTVVMM 106 (198)
T ss_dssp CTTSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCT-----TEEEEECCTTTCC-----CCCCEEEEEEESCGG
T ss_pred CCCCHHHHHHHH-Hhh-hhccccCcHHHHHHHHHHhhhcccc-----chhhhheeccccc-----ccccccEEEEeeeee
Confidence 799999998887 676 6999999999999999999988873 5778888876542 235799997644 21
Q ss_pred --CC---HHHHHHHHHhcccCCEEEEEe
Q 019408 81 --SD---SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 81 --sp---~~fld~al~~v~~gGlL~vt~ 103 (341)
.+ ..++..+.++|++||++.++.
T Consensus 107 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 107 FLEAQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp GSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 12 247888889999999988743
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=97.92 E-value=8.8e-06 Score=73.46 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=72.0
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-- 78 (341)
||+|..++..+...+ ..+|+++|+|+.+++.+++|++.++. ++++.++|+.++ .. .++||+|+.--
T Consensus 36 cG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~------~~~f~~~d~~~~----~~-~~~fD~v~~~~~l 104 (281)
T d2gh1a1 36 CGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY------DSEFLEGDATEI----EL-NDKYDIAICHAFL 104 (281)
T ss_dssp CTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS------EEEEEESCTTTC----CC-SSCEEEEEEESCG
T ss_pred CcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc------cccccccccccc----cc-cCCceEEEEehhh
Confidence 799999998887423 35799999999999999999997765 577889998653 11 35799998765
Q ss_pred --CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 --FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 --ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
...|..+++.+.+.|++||.|.+..
T Consensus 105 ~~~~d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 105 LHMTTPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp GGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 2346678899999999999998754
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=97.91 E-value=4.4e-06 Score=72.83 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=68.5
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F 79 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y 79 (341)
||||..++..++..| ..+|+++|++++.++.+++|++..++. ++.+.++|+...+.. ...||+|+++. .
T Consensus 84 ~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-----n~~~~~~d~~~~~~~----~~~fD~I~~~~~~ 154 (213)
T d1dl5a1 84 GGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-----NVIFVCGDGYYGVPE----FSPYDVIFVTVGV 154 (213)
T ss_dssp CTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEESCGGGCCGG----GCCEEEEEECSBB
T ss_pred CccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-----ccccccCchHHcccc----ccchhhhhhhccH
Confidence 799999998887434 358999999999999999999998873 667788998764432 34799999987 1
Q ss_pred CCCHHHHHHHHHhcccCCEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~v 101 (341)
. .+.+..++.|++||.|.+
T Consensus 155 ~---~~p~~l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 155 D---EVPETWFTQLKEGGRVIV 173 (213)
T ss_dssp S---CCCHHHHHHEEEEEEEEE
T ss_pred H---HhHHHHHHhcCCCcEEEE
Confidence 1 112455678999999987
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.91 E-value=6.4e-06 Score=73.82 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=59.7
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCC----CccEEEEeccHHHHHHHhhhcCCcccEEEe
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGD----EKRWVVTHFDANRVLSECYLKREFFDLIDI 76 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~----~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl 76 (341)
+||.|.-|+.+|+ .|+ +|+++|.||....++++|++........ ..+++++++|+.++|... ...||+|++
T Consensus 96 TaGlG~Da~vlA~-~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~---~~~~DvIYl 170 (250)
T d2oyra1 96 TAGLGRDAFVLAS-VGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI---TPRPQVVYL 170 (250)
T ss_dssp TCTTCHHHHHHHH-HTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC---SSCCSEEEE
T ss_pred CCcccHHHHHHHh-CCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc---CCCCCEEEE
Confidence 4899999999998 675 5999999999999999999864321000 136899999999999754 357999999
Q ss_pred CC-CC
Q 019408 77 DS-FG 80 (341)
Q Consensus 77 DP-yg 80 (341)
|| |-
T Consensus 171 DPMFp 175 (250)
T d2oyra1 171 DPMFP 175 (250)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 99 63
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=4.7e-06 Score=77.42 Aligned_cols=100 Identities=17% Similarity=0.155 Sum_probs=71.4
Q ss_pred ccccHhHHHHhhhCCC-CEEEEeeCCHHHHHHHHHHHHHcCC----C--CCCCccEEEEeccHHHHHHHhhhcCCcccEE
Q 019408 2 CGCGIRSLRYLAEAKA-DFVMANDGNDAHRRVILGNLKSIER----G--SGDEKRWVVTHFDANRVLSECYLKREFFDLI 74 (341)
Q Consensus 2 agsG~rgir~a~e~ga-~~V~~~Dis~~A~~~i~~N~~~n~~----~--~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI 74 (341)
+|||.+++..|...|. .+|+.+|++++.++.+++|++..+. . ....+++++.+.|+....... ....||.|
T Consensus 107 tGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~--~~~~fD~V 184 (324)
T d2b25a1 107 SGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI--KSLTFDAV 184 (324)
T ss_dssp CTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---------EEEE
T ss_pred ccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccccc--CCCCcceE
Confidence 7999999999885453 5899999999999999999985321 0 001246788899976543322 23479999
Q ss_pred EeCCCCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 75 DIDSFGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 75 dlDPygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+||=- .|...++.+.+.||+||.|++...
T Consensus 185 ~LD~p-~P~~~l~~~~~~LKpGG~lv~~~P 213 (324)
T d2b25a1 185 ALDML-NPHVTLPVFYPHLKHGGVCAVYVV 213 (324)
T ss_dssp EECSS-STTTTHHHHGGGEEEEEEEEEEES
T ss_pred eecCc-CHHHHHHHHHHhccCCCEEEEEeC
Confidence 99941 234678999999999999998543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.89 E-value=1.1e-05 Score=68.75 Aligned_cols=91 Identities=20% Similarity=0.121 Sum_probs=68.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..++..+. .|+ +|+++|+|+..++.+++++...+. ++..+++|+.++ ....+.||+|+.== +.
T Consensus 46 cG~G~~~~~la~-~~~-~v~giD~S~~~i~~ak~~~~~~~~------~~~~~~~d~~~l----~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 46 CGVGGFSFLLED-YGF-EVVGVDISEDMIRKAREYAKSRES------NVEFIVGDARKL----SFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp CTTSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTC------CCEEEECCTTSC----CSCTTCEEEEEEESCGG
T ss_pred CCcchhhhhHhh-hhc-ccccccccccchhhhhhhhccccc------cccccccccccc----cccCcCceEEEEecchh
Confidence 799999998887 565 699999999999999999987654 346678898763 23346899876532 11
Q ss_pred --C---CHHHHHHHHHhcccCCEEEEEec
Q 019408 81 --S---DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 --s---p~~fld~al~~v~~gGlL~vt~T 104 (341)
+ +..++..+.+.|++||.|+++..
T Consensus 114 ~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 1 22467778899999999988544
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=97.79 E-value=9.9e-06 Score=70.06 Aligned_cols=85 Identities=19% Similarity=0.131 Sum_probs=63.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEE-eCC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLID-IDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvId-lDP-- 78 (341)
||+|..+..++. .|+ +|+++|+|+.+++.+++|. . .. ++++|+.++ ....+.||+|+ +..
T Consensus 51 cG~G~~~~~l~~-~~~-~v~giD~s~~~l~~a~~~~----~-----~~--~~~~~~~~l----~~~~~~fD~ii~~~~~~ 113 (246)
T d2avna1 51 GGTGKWSLFLQE-RGF-EVVLVDPSKEMLEVAREKG----V-----KN--VVEAKAEDL----PFPSGAFEAVLALGDVL 113 (246)
T ss_dssp CTTCHHHHHHHT-TTC-EEEEEESCHHHHHHHHHHT----C-----SC--EEECCTTSC----CSCTTCEEEEEECSSHH
T ss_pred CCCchhcccccc-cce-EEEEeeccccccccccccc----c-----cc--ccccccccc----ccccccccceeeecchh
Confidence 799999999887 676 6999999999999998853 2 11 356777653 22346899887 455
Q ss_pred --CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 --FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 --ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
.-.+..++....+.|++||++.++.
T Consensus 114 ~~~~d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 114 SYVENKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp HHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence 2245677888889999999999854
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.74 E-value=1.7e-05 Score=72.87 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=70.4
Q ss_pred CccccHhHHHHhhh---CC--CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEE
Q 019408 1 MCGCGIRSLRYLAE---AK--ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLID 75 (341)
Q Consensus 1 fagsG~rgir~a~e---~g--a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvId 75 (341)
.||||.+.+.++.+ .+ ..+++++|+|+.++++++.|+.+++. ...+.+.|.... ....+||+|+
T Consensus 125 ~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~------~~~~~~~d~~~~-----~~~~~fD~vi 193 (328)
T d2f8la1 125 ACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ------KMTLLHQDGLAN-----LLVDPVDVVI 193 (328)
T ss_dssp TCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC------CCEEEESCTTSC-----CCCCCEEEEE
T ss_pred CCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh------hhhhhccccccc-----cccccccccc
Confidence 48999999888643 22 23689999999999999999998876 345667776532 2345899999
Q ss_pred eCC-CCCC---------------------HHHHHHHHHhcccCCEEEEEec
Q 019408 76 IDS-FGSD---------------------SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 76 lDP-ygsp---------------------~~fld~al~~v~~gGlL~vt~T 104 (341)
.+| |+.. ..|++.+++.|++||.+++-.+
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 999 7631 1378899999999999876443
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.68 E-value=3.6e-05 Score=66.76 Aligned_cols=93 Identities=14% Similarity=0.041 Sum_probs=68.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF-- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy-- 79 (341)
||||......+.-.+..+|+++|+|+.+++.++++++..+ ++.++.+|+...-.. ...-..+|+|+.|-.
T Consensus 65 cG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~-------ni~~i~~d~~~~~~~-~~~~~~vd~v~~~~~~~ 136 (209)
T d1nt2a_ 65 AASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN-------NIIPLLFDASKPWKY-SGIVEKVDLIYQDIAQK 136 (209)
T ss_dssp CTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS-------SEEEECSCTTCGGGT-TTTCCCEEEEEECCCST
T ss_pred CcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC-------CceEEEeeccCcccc-ccccceEEEEEecccCh
Confidence 7999877777653455689999999999999999998653 467788888754221 122235778888852
Q ss_pred CCCHHHHHHHHHhcccCCEEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~vt 102 (341)
..+..++..+.+.|++||.+.+.
T Consensus 137 ~~~~~~l~~~~~~LkpgG~l~i~ 159 (209)
T d1nt2a_ 137 NQIEILKANAEFFLKEKGEVVIM 159 (209)
T ss_dssp THHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHhccCCeEEEE
Confidence 23446788888999999999874
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.63 E-value=5.3e-05 Score=68.19 Aligned_cols=98 Identities=20% Similarity=0.304 Sum_probs=66.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC--CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID--SF 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD--Py 79 (341)
||||..++..+. .|. +|+++|+|+.+++.+++|...++... ......+...|...+-... .....||+|+.- -+
T Consensus 65 cG~G~~~~~la~-~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~fd~v~~~~~~~ 140 (292)
T d1xvaa_ 65 CGTGVDSIMLVE-EGF-SVTSVDASDKMLKYALKERWNRRKEP-AFDKWVIEEANWLTLDKDV-PAGDGFDAVICLGNSF 140 (292)
T ss_dssp CTTSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTTSH-HHHTCEEEECCGGGHHHHS-CCTTCEEEEEECSSCG
T ss_pred CCCcHHHHHHHH-cCC-eeeeccCchHHHHHHHHHHHhccccc-ccceeeeeecccccccccc-CCCCCceEEEEecCch
Confidence 899999999998 576 69999999999999999998765420 0012334455544332221 224579988642 21
Q ss_pred -------CCC---HHHHHHHHHhcccCCEEEEEe
Q 019408 80 -------GSD---SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 80 -------gsp---~~fld~al~~v~~gGlL~vt~ 103 (341)
... ..++..+.+.|++||+|+++.
T Consensus 141 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 141 AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp GGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 111 137788889999999999854
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=8.9e-05 Score=67.00 Aligned_cols=90 Identities=22% Similarity=0.284 Sum_probs=69.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe-CC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI-DS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl-DP-- 78 (341)
||.|..++++++..|+ +|+.+|+|++.++.+++.++..++. ..+.+...|...+ ..+||.|+. +=
T Consensus 61 CG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~----~~~~~~~~d~~~~-------~~~fD~i~si~~~e 128 (280)
T d2fk8a1 61 CGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTN----RSRQVLLQGWEDF-------AEPVDRIVSIEAFE 128 (280)
T ss_dssp CTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCS----SCEEEEESCGGGC-------CCCCSEEEEESCGG
T ss_pred CCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccc----cchhhhhhhhhhh-------ccchhhhhHhhHHH
Confidence 7899999888775576 7999999999999999999988774 5677777785432 458997753 33
Q ss_pred -CCCC--HHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGSD--SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygsp--~~fld~al~~v~~gGlL~vt~ 103 (341)
++.+ ..|+...-++|++||.+.+..
T Consensus 129 h~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 129 HFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp GTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 3332 367888889999999999854
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=8.3e-05 Score=67.37 Aligned_cols=95 Identities=21% Similarity=0.161 Sum_probs=67.9
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
.||-|.-++-.+.-..-.+|++||+|+.-++.+++|++..++. .+.+...|....-. ....+||.|.+||--
T Consensus 110 CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-----~~~~~~~~~~~~~~---~~~~~fd~IL~DaPC 181 (284)
T d1sqga2 110 CAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-----ATVKQGDGRYPSQW---CGEQQFDRILLDAPC 181 (284)
T ss_dssp SCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-----CEEEECCTTCTHHH---HTTCCEEEEEEECCC
T ss_pred cCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-----ceeeeccccccchh---cccccccEEEEeccc
Confidence 4788988887765323368999999999999999999999883 45555555543221 124579999999942
Q ss_pred CCH--------------------------HHHHHHHHhcccCCEEEEEec
Q 019408 81 SDS--------------------------SFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 sp~--------------------------~fld~al~~v~~gGlL~vt~T 104 (341)
|.. ..|+.|++.|++||.|.- +|
T Consensus 182 Sg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvY-sT 230 (284)
T d1sqga2 182 SATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVY-AT 230 (284)
T ss_dssp CCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEE-EE
T ss_pred cccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEE-ee
Confidence 211 234588899999997774 66
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=97.50 E-value=3.7e-05 Score=66.62 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=64.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-C-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-F- 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-y- 79 (341)
||+|..+..++. .|. +|+++|+|+++++.++++.. +.+.++++|+.++. ..++||+|.+== +
T Consensus 29 cG~G~~~~~l~~-~g~-~v~giD~s~~~i~~a~~~~~---------~~~~~~~~~~~~~~-----~~~~fD~I~~~~vle 92 (225)
T d2p7ia1 29 SFKGDFTSRLQE-HFN-DITCVEASEEAISHAQGRLK---------DGITYIHSRFEDAQ-----LPRRYDNIVLTHVLE 92 (225)
T ss_dssp CTTSHHHHHHTT-TCS-CEEEEESCHHHHHHHHHHSC---------SCEEEEESCGGGCC-----CSSCEEEEEEESCGG
T ss_pred CCCcHHHHHHHH-cCC-eEEEEeCcHHHhhhhhcccc---------cccccccccccccc-----cccccccccccceeE
Confidence 799999988876 565 59999999999999987643 24667888876532 246899885432 1
Q ss_pred --CCCHHHHHHHH-HhcccCCEEEEEecC
Q 019408 80 --GSDSSFLRTVF-NAVKRDGLLYLTSTD 105 (341)
Q Consensus 80 --gsp~~fld~al-~~v~~gGlL~vt~TD 105 (341)
-.|..++.... +.|++||.++++..+
T Consensus 93 h~~d~~~~l~~i~~~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 93 HIDDPVALLKRINDDWLAEGGRLFLVCPN 121 (225)
T ss_dssp GCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred ecCCHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 22456777776 679999999997654
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=0.00017 Score=65.54 Aligned_cols=73 Identities=12% Similarity=-0.039 Sum_probs=56.3
Q ss_pred CccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 1 MCGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 1 fagsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
.||.|.-++-.|.- .+..+|++||+|+.-++.+++|++..++. .+.+.+.|+..+-... ....+||.|.+||-
T Consensus 102 cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-----~~~~~~~d~~~~~~~~-~~~~~fD~VL~DaP 175 (293)
T d2b9ea1 102 CAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-----CCELAEEDFLAVSPSD-PRYHEVHYILLDPS 175 (293)
T ss_dssp SCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEECCGGGSCTTC-GGGTTEEEEEECCC
T ss_pred ccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-----ceeeeehhhhhhcccc-cccceeeEEeecCc
Confidence 47889988877643 34578999999999999999999999984 6788888886543221 11247999999994
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.48 E-value=6.3e-05 Score=66.09 Aligned_cols=92 Identities=12% Similarity=-0.018 Sum_probs=69.6
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||||......+.--| ..+|+++|+|+..++.+++|++..+ ....+..|+..... .......+|+|+.|..-
T Consensus 82 aGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~-------~~~~i~~d~~~~~~-~~~~~~~vD~i~~d~~~ 153 (227)
T d1g8aa_ 82 IASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR-------NIVPILGDATKPEE-YRALVPKVDVIFEDVAQ 153 (227)
T ss_dssp TTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT-------TEEEEECCTTCGGG-GTTTCCCEEEEEECCCS
T ss_pred cCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC-------CceEEEEECCCccc-ccccccceEEEEEEccc
Confidence 799999999987534 4689999999999999999987543 34567778765432 12223578999999843
Q ss_pred --CCHHHHHHHHHhcccCCEEEE
Q 019408 81 --SDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 81 --sp~~fld~al~~v~~gGlL~v 101 (341)
.+..++..+.+.|++||.+.+
T Consensus 154 ~~~~~~~l~~~~~~LkpgG~lvi 176 (227)
T d1g8aa_ 154 PTQAKILIDNAEVYLKRGGYGMI 176 (227)
T ss_dssp TTHHHHHHHHHHHHEEEEEEEEE
T ss_pred cchHHHHHHHHHHhcccCCeEEE
Confidence 334578888999999999887
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=2.3e-05 Score=68.76 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=66.9
Q ss_pred ccccHhHHHHhhhCC-CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAK-ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~g-a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
||||..+.-.|.-.| ..+|+++|++++.++..++|++..++.......+++..+|+..... ....||+|+++.--
T Consensus 85 ~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~----~~~~fD~I~~~~~~ 160 (224)
T d1i1na_ 85 SGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA----EEAPYDAIHVGAAA 160 (224)
T ss_dssp CTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG----GGCCEEEEEECSBB
T ss_pred CCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccc----hhhhhhhhhhhcch
Confidence 689988876665334 4689999999999999999998755410001356788999875443 23579999998611
Q ss_pred CCHHHHHHHHHhcccCCEEEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt 102 (341)
. ...+..++.|++||.|.+.
T Consensus 161 ~--~ip~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 161 P--VVPQALIDQLKPGGRLILP 180 (224)
T ss_dssp S--SCCHHHHHTEEEEEEEEEE
T ss_pred h--hcCHHHHhhcCCCcEEEEE
Confidence 1 1124466789999999973
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.47 E-value=0.00018 Score=66.08 Aligned_cols=94 Identities=18% Similarity=0.118 Sum_probs=69.3
Q ss_pred CccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC
Q 019408 1 MCGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 1 fagsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy 79 (341)
.||.|.-++..+.. .+-..|+++|+++.-++.+++|++..++. .+.+++.|+..+- .....||.|.+||-
T Consensus 124 CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-----~i~~~~~d~~~~~----~~~~~fD~ILvDaP 194 (313)
T d1ixka_ 124 AAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-----NVILFHSSSLHIG----ELNVEFDKILLDAP 194 (313)
T ss_dssp CSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-----SEEEESSCGGGGG----GGCCCEEEEEEECC
T ss_pred ccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-----ccccccccccccc----cccccccEEEEccc
Confidence 47888887777654 23457999999999999999999999884 5677888876541 22457999999994
Q ss_pred CC--------CH------------------HHHHHHHHhcccCCEEEEEec
Q 019408 80 GS--------DS------------------SFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 80 gs--------p~------------------~fld~al~~v~~gGlL~vt~T 104 (341)
-| |. ..++.|++.|++||.|.- +|
T Consensus 195 CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVY-sT 244 (313)
T d1ixka_ 195 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVY-ST 244 (313)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-EE
T ss_pred cccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEE-ee
Confidence 22 10 223588999999997664 55
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.40 E-value=0.00037 Score=63.05 Aligned_cols=89 Identities=19% Similarity=0.266 Sum_probs=71.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE-EeCC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI-DIDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI-dlDP-- 78 (341)
||.|..++++|++.|+ +|+.+++|++=++.+++.++..++. +++++..+|...+ +..||.| -+.=
T Consensus 71 CG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~----~~v~~~~~d~~~~-------~~~fD~i~si~~~e 138 (285)
T d1kpga_ 71 CGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENL----RSKRVLLAGWEQF-------DEPVDRIVSIGAFE 138 (285)
T ss_dssp CTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCC----SCEEEEESCGGGC-------CCCCSEEEEESCGG
T ss_pred CcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhh----hhhHHHHhhhhcc-------cccccceeeehhhh
Confidence 7999999999998886 7999999999999999999877764 6788899997532 3589955 3443
Q ss_pred -CCCC--HHHHHHHHHhcccCCEEEEE
Q 019408 79 -FGSD--SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 -ygsp--~~fld~al~~v~~gGlL~vt 102 (341)
++.. ..|+..+-+.|++||.+.+.
T Consensus 139 h~~~~~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 139 HFGHERYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp GTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred hcCchhHHHHHHHHHhhcCCCCcEEEE
Confidence 3433 46888888999999999973
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.39 E-value=0.00069 Score=59.22 Aligned_cols=93 Identities=17% Similarity=0.069 Sum_probs=66.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCC-
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFG- 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPyg- 80 (341)
||||......+.......|+++|+|+..++.++++++.++ .+.++..|+.....-. .....+|+|+.|-+-
T Consensus 83 cGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~-------ni~~i~~d~~~~~~~~-~~~~~v~~i~~~~~~~ 154 (230)
T d1g8sa_ 83 ASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE-------NIIPILGDANKPQEYA-NIVEKVDVIYEDVAQP 154 (230)
T ss_dssp CCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT-------TEEEEECCTTCGGGGT-TTCCCEEEEEECCCST
T ss_pred EEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc-------ccceEEEeeccCcccc-cccceeEEeeccccch
Confidence 7999999999875334689999999999999999877542 3556788887654322 122335566666532
Q ss_pred -CCHHHHHHHHHhcccCCEEEEE
Q 019408 81 -SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 -sp~~fld~al~~v~~gGlL~vt 102 (341)
.+..++..+.+.|++||.+.+.
T Consensus 155 ~~~~~~l~~~~r~LKpgG~~~i~ 177 (230)
T d1g8sa_ 155 NQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp THHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcccCceEEEE
Confidence 2345677888899999998874
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.38 E-value=9.6e-05 Score=64.43 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=67.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--C
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--F 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--y 79 (341)
||||..+.-.++=.| .+|+++|+++..++..++|++..++ .++++.++|+..... ....||.|++.. -
T Consensus 87 sGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~-----~nv~~~~gd~~~g~~----~~~pfD~Iiv~~a~~ 156 (215)
T d1jg1a_ 87 TGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGV-----KNVHVILGDGSKGFP----PKAPYDVIIVTAGAP 156 (215)
T ss_dssp CTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEESCGGGCCG----GGCCEEEEEECSBBS
T ss_pred CCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCC-----ceeEEEECccccCCc----ccCcceeEEeecccc
Confidence 689999887765234 4699999999999999999999988 478899999976443 246899999986 2
Q ss_pred CCCHHHHHHHHHhcccCCEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~v 101 (341)
.-|..+ ++.|++||.|.+
T Consensus 157 ~ip~~l----~~qL~~gGrLv~ 174 (215)
T d1jg1a_ 157 KIPEPL----IEQLKIGGKLII 174 (215)
T ss_dssp SCCHHH----HHTEEEEEEEEE
T ss_pred cCCHHH----HHhcCCCCEEEE
Confidence 224343 456999999985
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=97.38 E-value=0.00013 Score=62.73 Aligned_cols=91 Identities=12% Similarity=0.180 Sum_probs=68.2
Q ss_pred ccccHhHHHHhhhC--CCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 2 CGCGIRSLRYLAEA--KADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 2 agsG~rgir~a~e~--ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
||||..+++.+... ...+|+++|+|+..++.++++++..+.. ..+++.++|+..+ ....||+|.+-=
T Consensus 48 CGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~----~~~~~~~~d~~~~------~~~~~d~i~~~~~ 117 (225)
T d1im8a_ 48 CSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE----IPVEILCNDIRHV------EIKNASMVILNFT 117 (225)
T ss_dssp CTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCS----SCEEEECSCTTTC------CCCSEEEEEEESC
T ss_pred cchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhccc----chhhhccchhhcc------ccccceeeEEeee
Confidence 79999998888641 2347999999999999999999876653 4677888887643 234678886632
Q ss_pred --CC---CCHHHHHHHHHhcccCCEEEEE
Q 019408 79 --FG---SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 --yg---sp~~fld~al~~v~~gGlL~vt 102 (341)
+- .+..++..+.+.|++||.+.+.
T Consensus 118 l~~~~~~d~~~~l~~i~~~LkpgG~li~~ 146 (225)
T d1im8a_ 118 LQFLPPEDRIALLTKIYEGLNPNGVLVLS 146 (225)
T ss_dssp GGGSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccChhhHHHHHHHHHHhCCCCceeecc
Confidence 11 1236788889999999999975
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=97.30 E-value=0.00012 Score=64.92 Aligned_cols=91 Identities=13% Similarity=0.079 Sum_probs=68.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-yg 80 (341)
||+|..+...+. .+...|+++|.|+..++.+++++... ..+++++.|+.++ ......||+|.+-- +.
T Consensus 102 cG~G~~t~~ll~-~~~~~v~~vD~s~~~l~~a~~~~~~~-------~~~~~~~~d~~~~----~~~~~~fD~I~~~~vl~ 169 (254)
T d1xtpa_ 102 AGIGRITKNLLT-KLYATTDLLEPVKHMLEEAKRELAGM-------PVGKFILASMETA----TLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp CTTTHHHHHTHH-HHCSEEEEEESCHHHHHHHHHHTTTS-------SEEEEEESCGGGC----CCCSSCEEEEEEESCGG
T ss_pred ccCChhhHHHHh-hcCceEEEEcCCHHHHHhhhcccccc-------ccceeEEcccccc----ccCCCccceEEeecccc
Confidence 789988888776 46778999999999999999877532 2467888988654 22356899887655 32
Q ss_pred C-C----HHHHHHHHHhcccCCEEEEEec
Q 019408 81 S-D----SSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 s-p----~~fld~al~~v~~gGlL~vt~T 104 (341)
. + ..++..+.+.|++||+|++...
T Consensus 170 hl~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 170 YLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 1 1 2567788899999999998543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.28 E-value=0.00044 Score=59.01 Aligned_cols=93 Identities=22% Similarity=0.206 Sum_probs=67.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEecc---HHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFD---ANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~D---A~~~l~~~~~~~~~fDvIdlDP 78 (341)
+|+|.-+...+....-.+|+++|.|+++++.++++++..+ .++.+++++ +..++.... ...||-|.+|-
T Consensus 32 ~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~------~r~~~~~~~f~~~~~~~~~~~--~~~vdgIl~Dl 103 (192)
T d1m6ya2 32 VGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS------DRVSLFKVSYREADFLLKTLG--IEKVDGILMDL 103 (192)
T ss_dssp CTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT------TTEEEEECCGGGHHHHHHHTT--CSCEEEEEEEC
T ss_pred CCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc------ccccchhHHHhhHHHHHHHcC--CCCcceeeecc
Confidence 6999999888875333579999999999999999998654 356677764 444444432 35899999994
Q ss_pred CCCCH--------------HHHHHHHHhcccCCEEEEEe
Q 019408 79 FGSDS--------------SFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp~--------------~fld~al~~v~~gGlL~vt~ 103 (341)
|-.+ ..++.+...+++||.+.+..
T Consensus 104 -GvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 104 -GVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp -SCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred -chhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 3222 33567788999999998743
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=7.8e-05 Score=64.71 Aligned_cols=96 Identities=9% Similarity=0.049 Sum_probs=66.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCC-------C-----CCCCccEEEEeccHHHHHHHhhhcCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIER-------G-----SGDEKRWVVTHFDANRVLSECYLKRE 69 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~-------~-----~~~~~~~~v~~~DA~~~l~~~~~~~~ 69 (341)
||+|..++..|+ .|. +|+++|+|+.|++.++++...... . ......+++.++|++.+-. ....
T Consensus 54 CG~G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~---~~~~ 128 (229)
T d2bzga1 54 CGKAVEMKWFAD-RGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPR---TNIG 128 (229)
T ss_dssp CTTCTHHHHHHH-TTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGG---SCCC
T ss_pred CCCcHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccc---cccC
Confidence 899999999988 687 699999999999999887653211 0 0001357788999876532 2245
Q ss_pred cccEEEeCC-CC--CC---HHHHHHHHHhcccCCEEEEE
Q 019408 70 FFDLIDIDS-FG--SD---SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 70 ~fDvIdlDP-yg--sp---~~fld~al~~v~~gGlL~vt 102 (341)
.||+|.-== |. .| ..++....++|++||.+.++
T Consensus 129 ~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~ 167 (229)
T d2bzga1 129 KFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLC 167 (229)
T ss_dssp CEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEE
Confidence 789885321 11 11 25777888999999976653
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.26 E-value=0.00055 Score=62.04 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=69.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEE-eCC--
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLID-IDS-- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvId-lDP-- 78 (341)
||.|..++++|.+.|+ +|+.+|+|++-++.+++.++..++. +.+++...|.. ....+||.|+ +.=
T Consensus 70 CG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~----~~v~~~~~d~~-------~~~~~fD~i~sie~~e 137 (291)
T d1kpia_ 70 CGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSP----RRKEVRIQGWE-------EFDEPVDRIVSLGAFE 137 (291)
T ss_dssp CTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCS----SCEEEEECCGG-------GCCCCCSEEEEESCGG
T ss_pred CcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccc----hhhhhhhhccc-------ccccccceEeechhHH
Confidence 6899999999887776 7999999999999999999988874 57777788853 1245899776 332
Q ss_pred -CCCC---------HHHHHHHHHhcccCCEEEEE
Q 019408 79 -FGSD---------SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 79 -ygsp---------~~fld~al~~v~~gGlL~vt 102 (341)
++.+ ..|+..+-+.|++||.+.+.
T Consensus 138 H~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 138 HFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp GTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred hcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 3322 26788888999999999974
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=97.16 E-value=9.7e-05 Score=64.78 Aligned_cols=86 Identities=14% Similarity=0.126 Sum_probs=63.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||||..+.-.+. . +.+|+++|++++.++.+++|+..+ .++++.++|...... ...+||+|++.--..
T Consensus 79 ~GsGy~ta~La~-l-~~~V~aiE~~~~~~~~A~~~~~~~-------~nv~~~~~d~~~g~~----~~~pfD~Iiv~~a~~ 145 (224)
T d1vbfa_ 79 TGIGYYTALIAE-I-VDKVVSVEINEKMYNYASKLLSYY-------NNIKLILGDGTLGYE----EEKPYDRVVVWATAP 145 (224)
T ss_dssp CTTSHHHHHHHH-H-SSEEEEEESCHHHHHHHHHHHTTC-------SSEEEEESCGGGCCG----GGCCEEEEEESSBBS
T ss_pred CCCCHHHHHHHH-H-hcccccccccHHHHHHHHHHHhcc-------cccccccCchhhcch----hhhhHHHHHhhcchh
Confidence 799999876665 4 468999999999999999987643 357888999865432 235799999985110
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
...+.-++.|++||.|.+-
T Consensus 146 --~ip~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 146 --TLLCKPYEQLKEGGIMILP 164 (224)
T ss_dssp --SCCHHHHHTEEEEEEEEEE
T ss_pred --hhhHHHHHhcCCCCEEEEE
Confidence 1123445789999999863
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.00015 Score=63.15 Aligned_cols=40 Identities=18% Similarity=0.041 Sum_probs=34.7
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIER 42 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~ 42 (341)
||+|..++..++ .++.+|+++|+|+.+++.++++++....
T Consensus 60 cG~G~~~~~~~~-~~~~~v~giD~S~~~i~~a~~~~~~~~~ 99 (257)
T d2a14a1 60 SGPTIYQVLAAC-DSFQDITLSDFTDRNREELEKWLKKEPG 99 (257)
T ss_dssp CTTCCGGGTTGG-GTEEEEEEEESCHHHHHHHHHHHHTCTT
T ss_pred CCCCHhHHHHhc-cccCcEEEecCCHHHHHHHHHHHhhccc
Confidence 789999888877 5778999999999999999999986543
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=97.03 E-value=0.0027 Score=55.51 Aligned_cols=92 Identities=14% Similarity=-0.013 Sum_probs=69.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|..+++++....-.+++.+|+ +..++.+++++...++. ++++++.+|+++. ....||+|++==
T Consensus 89 cG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~----~rv~~~~~D~~~~------~~~~~D~v~~~~vlh 157 (253)
T d1tw3a2 89 GGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS----DRVDVVEGDFFEP------LPRKADAIILSFVLL 157 (253)
T ss_dssp CTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT----TTEEEEECCTTSC------CSSCEEEEEEESCGG
T ss_pred CCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcc----cchhhccccchhh------cccchhheeeccccc
Confidence 799999999998633457889998 67899999999988774 5788999997532 234699987543
Q ss_pred -CCC--CHHHHHHHHHhcccCCEEEEEec
Q 019408 79 -FGS--DSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 79 -ygs--p~~fld~al~~v~~gGlL~vt~T 104 (341)
+.. ...++..+.++|++||.|.|...
T Consensus 158 ~~~d~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 158 NWPDHDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp GSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence 111 12567788899999999988654
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.001 Score=60.95 Aligned_cols=96 Identities=13% Similarity=0.102 Sum_probs=69.6
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHc-------CCCCCCCccEEEEeccHHHHHHHhhhcCCcccEE
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSI-------ERGSGDEKRWVVTHFDANRVLSECYLKREFFDLI 74 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n-------~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvI 74 (341)
||+|...+.+|++.++.+|+.+|+|+.++++++++++.. ++. ..++++.++|+...-..... ...|+|
T Consensus 160 cG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~---~~~i~~~~gd~~~~~~~~~~--~~advi 234 (328)
T d1nw3a_ 160 SGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK---HAEYTLERGDFLSEEWRERI--ANTSVI 234 (328)
T ss_dssp CTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCC---CCCEEEEECCTTSHHHHHHH--HHCSEE
T ss_pred CCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcccc---CCceEEEECccccccccccc--CcceEE
Confidence 799999999998878889999999999999999988753 222 13688999998764321110 135899
Q ss_pred EeCCCCC-C--HHHHHHHHHhcccCCEEEEE
Q 019408 75 DIDSFGS-D--SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 75 dlDPygs-p--~~fld~al~~v~~gGlL~vt 102 (341)
++-=+.- + ...+...++.+|+||.+.++
T Consensus 235 ~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 235 FVNNFAFGPEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp EECCTTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred EEcceecchHHHHHHHHHHHhCCCCcEEEEe
Confidence 9865322 1 23455667889999999864
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.0079 Score=52.74 Aligned_cols=100 Identities=9% Similarity=0.048 Sum_probs=68.6
Q ss_pred ccccHhHHHHhhh-----CCC-CEEEEeeCCHHHHHHHHHHHHHcC-CCCCCCccEEEEeccHHHHHHHh--hhcCCccc
Q 019408 2 CGCGIRSLRYLAE-----AKA-DFVMANDGNDAHRRVILGNLKSIE-RGSGDEKRWVVTHFDANRVLSEC--YLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e-----~ga-~~V~~~Dis~~A~~~i~~N~~~n~-~~~~~~~~~~v~~~DA~~~l~~~--~~~~~~fD 72 (341)
||+|...+..+.+ .++ .+++++|.|+..++.++++++... +. ..+..+.+.++..+.... .....+||
T Consensus 49 cG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~fD 125 (280)
T d1jqea_ 49 GGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLE---NVKFAWHKETSSEYQSRMLEKKELQKWD 125 (280)
T ss_dssp CTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCT---TEEEEEECSCHHHHHHHHTTSSSCCCEE
T ss_pred CCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccc---cccccchhhhhhhhcchhcccCCCCcee
Confidence 7899887776553 122 357999999999999999987532 21 123456677776654332 23456899
Q ss_pred EEEe-CC---CCCCHHHHHHHHHhcccCCEEEEEec
Q 019408 73 LIDI-DS---FGSDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 73 vIdl-DP---ygsp~~fld~al~~v~~gGlL~vt~T 104 (341)
+|.. .- +..+..++....++|++||+|.++..
T Consensus 126 ~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 126 FIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence 8865 22 22355788899999999999988654
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.00063 Score=60.44 Aligned_cols=85 Identities=12% Similarity=0.075 Sum_probs=61.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||+|......+....-..|+.+|+|+.+++.++++.. ++++.++|+.++ ......||+|..-- .
T Consensus 93 cG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~----------~~~~~~~d~~~l----~~~~~sfD~v~~~~--~ 156 (268)
T d1p91a_ 93 CGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP----------QVTFCVASSHRL----PFSDTSMDAIIRIY--A 156 (268)
T ss_dssp CTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT----------TSEEEECCTTSC----SBCTTCEEEEEEES--C
T ss_pred CCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc----------cccceeeehhhc----cCCCCCEEEEeecC--C
Confidence 7999988888763223579999999999998877532 346778888653 23356799887431 1
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
| ..++...+.||+||+|+++.
T Consensus 157 ~-~~~~e~~rvLkpgG~l~~~~ 177 (268)
T d1p91a_ 157 P-CKAEELARVVKPGGWVITAT 177 (268)
T ss_dssp C-CCHHHHHHHEEEEEEEEEEE
T ss_pred H-HHHHHHHHHhCCCcEEEEEe
Confidence 3 34667889999999999854
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=96.65 E-value=0.00077 Score=56.70 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=60.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
||+|....+.+ +++.+|.|+..++.++++ + ++++++|+.++ ....+.||+|..==
T Consensus 45 cG~G~~~~~~~------~~~giD~s~~~~~~a~~~----~--------~~~~~~d~~~l----~~~~~~fD~I~~~~~l~ 102 (208)
T d1vlma_ 45 VGTGRFAVPLK------IKIGVEPSERMAEIARKR----G--------VFVLKGTAENL----PLKDESFDFALMVTTIC 102 (208)
T ss_dssp CTTSTTHHHHT------CCEEEESCHHHHHHHHHT----T--------CEEEECBTTBC----CSCTTCEEEEEEESCGG
T ss_pred CCCcccccccc------eEEEEeCChhhccccccc----c--------ccccccccccc----ccccccccccccccccc
Confidence 68897766553 258999999999998763 2 35788888654 22346899986532
Q ss_pred -CCCCHHHHHHHHHhcccCCEEEEEecCC
Q 019408 79 -FGSDSSFLRTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 79 -ygsp~~fld~al~~v~~gGlL~vt~TD~ 106 (341)
...+..++..+.+.|++||.|.++..+.
T Consensus 103 h~~d~~~~l~~~~~~L~pgG~l~i~~~~~ 131 (208)
T d1vlma_ 103 FVDDPERALKEAYRILKKGGYLIVGIVDR 131 (208)
T ss_dssp GSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred cccccccchhhhhhcCCCCceEEEEecCC
Confidence 1235678899999999999999876533
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.65 E-value=0.00097 Score=63.16 Aligned_cols=95 Identities=20% Similarity=0.170 Sum_probs=71.0
Q ss_pred CccccHhHHHHhhh---CCC----------CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhc
Q 019408 1 MCGCGIRSLRYLAE---AKA----------DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLK 67 (341)
Q Consensus 1 fagsG~rgir~a~e---~ga----------~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~ 67 (341)
.||||.+-+.++.. .+. ..++..|+++.++.+.+.|+-+.+.. .....+.+.|... ...
T Consensus 170 acGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~---~~~~~i~~~d~l~-----~~~ 241 (425)
T d2okca1 170 ACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG---TDRSPIVCEDSLE-----KEP 241 (425)
T ss_dssp TCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC---SSCCSEEECCTTT-----SCC
T ss_pred ccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc---cccceeecCchhh-----hhc
Confidence 48999998887653 111 23899999999999999999998773 1234467777653 123
Q ss_pred CCcccEEEeCC-CCCC--------------------HHHHHHHHHhcccCCEEEEEe
Q 019408 68 REFFDLIDIDS-FGSD--------------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 68 ~~~fDvIdlDP-ygsp--------------------~~fld~al~~v~~gGlL~vt~ 103 (341)
..+||+|+..| ||.- ..|+..+++.+++||.+++--
T Consensus 242 ~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 242 STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 46899999999 8641 249999999999999888644
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.62 E-value=0.0021 Score=53.34 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=60.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHH---HHhhhcCCcccEEEeCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVL---SECYLKREFFDLIDIDSF 79 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l---~~~~~~~~~fDvIdlDPy 79 (341)
+.|...+.+|+..|+++|+++|.|++-.+++++ .+.+ .-+.....|..+.. .+. ..+..+|+|+ |.=
T Consensus 39 ~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~~~~~~~~i~~~-~~~~g~Dvvi-d~v 108 (182)
T d1vj0a2 39 PLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD----LTLNRRETSVEERRKAIMDI-THGRGADFIL-EAT 108 (182)
T ss_dssp HHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS----EEEETTTSCHHHHHHHHHHH-TTTSCEEEEE-ECS
T ss_pred ccchhheeccccccccccccccccccccccccc----ccce----EEEeccccchHHHHHHHHHh-hCCCCceEEe-ecC
Confidence 457788889988899999999999999998876 4542 11111233444332 222 2245689755 766
Q ss_pred CCCHHHHHHHHHhcccCCEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~v 101 (341)
|++ .-++.+++++++||.+++
T Consensus 109 G~~-~~~~~a~~~l~~~G~iv~ 129 (182)
T d1vj0a2 109 GDS-RALLEGSELLRRGGFYSV 129 (182)
T ss_dssp SCT-THHHHHHHHEEEEEEEEE
T ss_pred Cch-hHHHHHHHHhcCCCEEEE
Confidence 655 557889999999999876
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=96.60 E-value=0.00068 Score=55.64 Aligned_cols=96 Identities=7% Similarity=-0.061 Sum_probs=62.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCC--C-----CCccEEEEeccHHHHHHHhhhcCCcccEE
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGS--G-----DEKRWVVTHFDANRVLSECYLKREFFDLI 74 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~--~-----~~~~~~v~~~DA~~~l~~~~~~~~~fDvI 74 (341)
||+|-.++..|. .|. +|+++|+|+.+++.++++++..+... . +....++.++|+..+-... ...||+|
T Consensus 29 CG~G~~a~~la~-~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~---~~~~D~i 103 (201)
T d1pjza_ 29 CGKSQDMSWLSG-QGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD---IGHCAAF 103 (201)
T ss_dssp TCCSHHHHHHHH-HCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH---HHSEEEE
T ss_pred CcCCHHHHHHHH-cCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc---ccceeEE
Confidence 799999988876 586 69999999999999999886432100 0 0012356777776543221 2368977
Q ss_pred Ee-CCCC--CC---HHHHHHHHHhcccCCEEEEE
Q 019408 75 DI-DSFG--SD---SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 75 dl-DPyg--sp---~~fld~al~~v~~gGlL~vt 102 (341)
.. .-+. .+ ..++....+.|++||.+.+.
T Consensus 104 ~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 104 YDRAAMIALPADMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred EEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEE
Confidence 43 2221 11 24456777899999987764
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.39 E-value=0.0027 Score=52.66 Aligned_cols=90 Identities=10% Similarity=-0.006 Sum_probs=63.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|..++.+|+..|+++|++.|.|++-.+.+++ .|.. +-+.....|..+.+.+.. .+..||+| +|.=|++
T Consensus 38 ~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa~----~~i~~~~~~~~~~v~~~t-~g~G~D~v-id~~g~~ 107 (174)
T d1jqba2 38 AVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGAT----DILNYKNGHIEDQVMKLT-NGKGVDRV-IMAGGGS 107 (174)
T ss_dssp HHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTCS----EEECGGGSCHHHHHHHHT-TTSCEEEE-EECSSCT
T ss_pred cchhhhhhhhhcccccccccccchhhhHHHHHh----hCcc----ccccccchhHHHHHHHHh-hccCcceE-EEccCCH
Confidence 557888899998899999999999998888864 5542 111122344455555442 34568974 6665654
Q ss_pred HHHHHHHHHhcccCCEEEEEe
Q 019408 83 SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt~ 103 (341)
..++.++++++++|.+.+..
T Consensus 108 -~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 108 -ETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp -THHHHHHHHEEEEEEEEECC
T ss_pred -HHHHHHHHHHhcCCEEEEEe
Confidence 66789999999999999743
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.0022 Score=62.34 Aligned_cols=100 Identities=10% Similarity=0.009 Sum_probs=66.2
Q ss_pred CccccHhHHHHhhh---CCC---------------CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHH
Q 019408 1 MCGCGIRSLRYLAE---AKA---------------DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLS 62 (341)
Q Consensus 1 fagsG~rgir~a~e---~ga---------------~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~ 62 (341)
.||||.+-+.+... ... ..++..|+++.++.+.+.|+-+.+....-.....+...|...-
T Consensus 172 acGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~-- 249 (524)
T d2ar0a1 172 AAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGS-- 249 (524)
T ss_dssp TCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSH--
T ss_pred hhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhhhhhhhh--
Confidence 48999997766442 111 1479999999999999999998765300000111233333211
Q ss_pred HhhhcCCcccEEEeCC-CCCC-----------------HHHHHHHHHhcccCCEEEEEe
Q 019408 63 ECYLKREFFDLIDIDS-FGSD-----------------SSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 63 ~~~~~~~~fDvIdlDP-ygsp-----------------~~fld~al~~v~~gGlL~vt~ 103 (341)
-.....+||+|+..| ||.. ..|+..+++.|++||.+++--
T Consensus 250 -d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 250 -DGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 307 (524)
T ss_dssp -HHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence 112345799999999 8752 148999999999999998743
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.15 E-value=0.06 Score=46.84 Aligned_cols=141 Identities=13% Similarity=0.090 Sum_probs=107.1
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||.|.=||-.|--..-.+|+.+|.+..=+..+++=++..++. .+++++..+..+-... ...++||+|.-=-|++
T Consensus 79 SGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-----n~~i~~~R~E~~~~~~-~~~~~~D~v~sRAva~ 152 (239)
T d1xdza_ 79 AGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-----NTTFCHDRAETFGQRK-DVRESYDIVTARAVAR 152 (239)
T ss_dssp SSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-----SEEEEESCHHHHTTCT-TTTTCEEEEEEECCSC
T ss_pred CCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-----CcEEEeehhhhccccc-cccccceEEEEhhhhC
Confidence 688999999986444568999999999999999988888883 6788899887654321 2245799999888888
Q ss_pred CHHHHHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEecc
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYY 161 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s~~ 161 (341)
...+++-+...+++||.+.... |.. + +.=+....++.+..+..++-+..+.
T Consensus 153 l~~ll~~~~~~l~~~g~~i~~K-------G~~----------------~------~~El~~a~~~~~~~~~~~~~v~~~~ 203 (239)
T d1xdza_ 153 LSVLSELCLPLVKKNGLFVALK-------AAS----------------A------EEELNAGKKAITTLGGELENIHSFK 203 (239)
T ss_dssp HHHHHHHHGGGEEEEEEEEEEE-------CC-----------------C------HHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHhhhcccCCEEEEEC-------CCC----------------h------HHHHHHHHHHHHHcCCEEEEEEEEe
Confidence 8889999999999999998744 321 1 1223445566778888888887777
Q ss_pred cCCCCeEEEEEEEEeC
Q 019408 162 SYHGPVFRVMLRVHRK 177 (341)
Q Consensus 162 ~~~dhy~Rv~vrv~~~ 177 (341)
-|....-|.+|.+.+-
T Consensus 204 lp~~~~~r~lv~i~K~ 219 (239)
T d1xdza_ 204 LPIEESDRNIMVIRKI 219 (239)
T ss_dssp CTTTCCEEEEEEEEEC
T ss_pred CCCCCCCEEEEEEEEC
Confidence 6677777888877654
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.14 E-value=0.0016 Score=56.50 Aligned_cols=93 Identities=13% Similarity=0.190 Sum_probs=62.7
Q ss_pred ccccHhHHHHhh---hCCC---CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEE
Q 019408 2 CGCGIRSLRYLA---EAKA---DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLID 75 (341)
Q Consensus 2 agsG~rgir~a~---e~ga---~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvId 75 (341)
||||..+--.++ ..|+ .+|+.+|++++.++..++|+..++....+..++.+.++|+.+... ....||.|+
T Consensus 89 tGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~----~~~~fD~Ii 164 (223)
T d1r18a_ 89 SGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP----PNAPYNAIH 164 (223)
T ss_dssp CTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG----GGCSEEEEE
T ss_pred CCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc----cccceeeEE
Confidence 688887754443 2343 489999999999999999986532200000357889999875432 245899999
Q ss_pred eCC-C-CCCHHHHHHHHHhcccCCEEEEE
Q 019408 76 IDS-F-GSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 76 lDP-y-gsp~~fld~al~~v~~gGlL~vt 102 (341)
++- . .-| +.-++.|++||.|.+.
T Consensus 165 v~~a~~~~p----~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 165 VGAAAPDTP----TELINQLASGGRLIVP 189 (223)
T ss_dssp ECSCBSSCC----HHHHHTEEEEEEEEEE
T ss_pred EEeechhch----HHHHHhcCCCcEEEEE
Confidence 986 1 113 3345689999999863
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.11 E-value=0.0075 Score=56.86 Aligned_cols=94 Identities=11% Similarity=0.058 Sum_probs=63.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcC-------CCCCCCccEEE-EeccHHH--HHHHhhhcCCcc
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIE-------RGSGDEKRWVV-THFDANR--VLSECYLKREFF 71 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~-------~~~~~~~~~~v-~~~DA~~--~l~~~~~~~~~f 71 (341)
||+|...+.+|++.|+++|+.+|+|+.+++.+++|++..+ .. ...... ..+|... ..... -..+
T Consensus 225 CG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~---~~~~~~~~~~~f~~~~~~d~~---~~~a 298 (406)
T d1u2za_ 225 SGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR---LNNVEFSLKKSFVDNNRVAEL---IPQC 298 (406)
T ss_dssp CTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC---CCCEEEEESSCSTTCHHHHHH---GGGC
T ss_pred CCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccc---cccceeeeeechhhccccccc---cccc
Confidence 7999999999998788899999999999999999998542 11 012222 2333221 11111 1257
Q ss_pred cEEEeCCCCCC---HHHHHHHHHhcccCCEEEE
Q 019408 72 DLIDIDSFGSD---SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 72 DvIdlDPygsp---~~fld~al~~v~~gGlL~v 101 (341)
|+|++.-|... ...+...++.||+||.|.+
T Consensus 299 dVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs 331 (406)
T d1u2za_ 299 DVILVNNFLFDEDLNKKVEKILQTAKVGCKIIS 331 (406)
T ss_dssp SEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred eEEEEecccCchHHHHHHHHHHHhcCCCcEEEE
Confidence 99999764322 2345677789999999875
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.03 E-value=0.015 Score=47.22 Aligned_cols=91 Identities=13% Similarity=0.067 Sum_probs=60.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEE-eccHHHHHHHh-hhcCCcccEEEeCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVT-HFDANRVLSEC-YLKREFFDLIDIDSFG 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~-~~DA~~~l~~~-~~~~~~fDvIdlDPyg 80 (341)
+.|...+.+++..|+.+|++.|.+++-.+++++ .|.+ .+... ..|........ ...+..+|+| +|-=|
T Consensus 37 ~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga~-----~~~~~~~~~~~~~~~~~~~~~g~g~Dvv-id~~G 106 (171)
T d1pl8a2 37 PIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD-----LVLQISKESPQEIARKVEGQLGCKPEVT-IECTG 106 (171)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS-----EEEECSSCCHHHHHHHHHHHHTSCCSEE-EECSC
T ss_pred ccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCCc-----ccccccccccccccccccccCCCCceEE-EeccC
Confidence 456666777777899999999999999998776 4552 22222 23333333222 1235678974 45545
Q ss_pred CCHHHHHHHHHhcccCCEEEEEec
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLTST 104 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt~T 104 (341)
++ ..++.+++++++||.+++...
T Consensus 107 ~~-~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 107 AE-ASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp CH-HHHHHHHHHSCTTCEEEECSC
T ss_pred Cc-hhHHHHHHHhcCCCEEEEEec
Confidence 43 567899999999999997554
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.95 E-value=0.0051 Score=51.68 Aligned_cols=84 Identities=18% Similarity=0.107 Sum_probs=59.0
Q ss_pred CccccHhHHHHhhh-CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-
Q 019408 1 MCGCGIRSLRYLAE-AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS- 78 (341)
Q Consensus 1 fagsG~rgir~a~e-~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP- 78 (341)
+||||.+.+.+... .....++.+|+++.++++. .+..++++|.... ....+||+|..+|
T Consensus 27 ~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~--------------~~~~~~~~~~~~~-----~~~~~fd~ii~npP 87 (223)
T d2ih2a1 27 ACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------PWAEGILADFLLW-----EPGEAFDLILGNPP 87 (223)
T ss_dssp TCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------------TTEEEEESCGGGC-----CCSSCEEEEEECCC
T ss_pred CCchHHHHHHHHHhccccceEEeeecCHHHHhhc--------------ccceeeeeehhcc-----ccccccceecccCc
Confidence 58999887666543 4567899999998764332 1335667776532 2346899999999
Q ss_pred CCC--------------------------------CHHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGS--------------------------------DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygs--------------------------------p~~fld~al~~v~~gGlL~vt~ 103 (341)
|+. ...|++.|++.+++||.+++-.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~ 144 (223)
T d2ih2a1 88 YGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 144 (223)
T ss_dssp CCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence 753 0256779999999999998643
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.55 E-value=0.041 Score=44.28 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=58.3
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEE---eccHHHHHHHh-hhcCCcccEEEeCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVT---HFDANRVLSEC-YLKREFFDLIDIDS 78 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~---~~DA~~~l~~~-~~~~~~fDvIdlDP 78 (341)
+.|...+.+|+..|+ +|+++|.+++-.+.+++ .+.. ...+. ..|........ ...+..+|+|+ |-
T Consensus 37 ~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~----~ga~-----~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vi-d~ 105 (170)
T d1e3ja2 37 PIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN----CGAD-----VTLVVDPAKEEESSIIERIRSAIGDLPNVTI-DC 105 (170)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS-----EEEECCTTTSCHHHHHHHHHHHSSSCCSEEE-EC
T ss_pred ccchhhHhhHhhhcc-cccccchHHHHHHHHHH----cCCc-----EEEeccccccccchhhhhhhcccccCCceee-ec
Confidence 467777888887887 79999999999998887 3431 11111 12222222222 12356789774 44
Q ss_pred CCCCHHHHHHHHHhcccCCEEEEEe
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~vt~ 103 (341)
=|.+ ..++.++++++++|.+.+..
T Consensus 106 ~g~~-~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 106 SGNE-KCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp SCCH-HHHHHHHHHSCTTCEEEECS
T ss_pred CCCh-HHHHHHHHHHhcCCceEEEe
Confidence 3443 56889999999999999754
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.52 E-value=0.008 Score=50.00 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=64.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|.|..+|.+|+-.|++.|+.++.+++....+.+. .+.+ .-+.....|..+.+.+.. ++.+|+| +|+-|.
T Consensus 41 GgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~---~gad----~vi~~~~~~~~~~~~~~~--~~GvDvv-~D~vGg 110 (187)
T d1vj1a2 41 GACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSE---LGFD----AAVNYKTGNVAEQLREAC--PGGVDVY-FDNVGG 110 (187)
T ss_dssp STTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHH---SCCS----EEEETTSSCHHHHHHHHC--TTCEEEE-EESSCH
T ss_pred chhhHHHHHHHHHcCCcceecccchHHHHhhhhhc---ccce----EEeeccchhHHHHHHHHh--ccCceEE-EecCCc
Confidence 47789999999988999898888777666655432 3331 222333457777777653 4569988 599764
Q ss_pred CHHHHHHHHHhcccCCEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~v 101 (341)
+.++.++++++++|.+.+
T Consensus 111 --~~~~~~~~~l~~~G~iv~ 128 (187)
T d1vj1a2 111 --DISNTVISQMNENSHIIL 128 (187)
T ss_dssp --HHHHHHHTTEEEEEEEEE
T ss_pred --hhHHHHhhhccccccEEE
Confidence 778999999999999985
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=95.49 E-value=0.012 Score=51.52 Aligned_cols=91 Identities=13% Similarity=-0.002 Sum_probs=67.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--- 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--- 78 (341)
+|+|..+++.++..---+++..|+ |+.++..+++++..++. +++++..+|.++- .+..||+|.+==
T Consensus 90 ~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~----~ri~~~~~d~~~~------~p~~~D~v~~~~vLh 158 (256)
T d1qzza2 90 GGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA----DRVTVAEGDFFKP------LPVTADVVLLSFVLL 158 (256)
T ss_dssp CTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT----TTEEEEECCTTSC------CSCCEEEEEEESCGG
T ss_pred CCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCc----ceeeeeeeecccc------ccccchhhhcccccc
Confidence 699999999998522347899998 78899999999988774 5788888887531 234699887543
Q ss_pred -CCC--CHHHHHHHHHhcccCCEEEEEe
Q 019408 79 -FGS--DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 -ygs--p~~fld~al~~v~~gGlL~vt~ 103 (341)
+.. ...++..+.++|++||.|.|..
T Consensus 159 ~~~d~~~~~lL~~i~~~LkpgG~llI~d 186 (256)
T d1qzza2 159 NWSDEDALTILRGCVRALEPGGRLLVLD 186 (256)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCcHHHHHHHHHHHhhcCCcceeEEEE
Confidence 111 1356788889999999888754
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.38 E-value=0.0086 Score=48.66 Aligned_cols=89 Identities=11% Similarity=0.060 Sum_probs=59.1
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+.+++..|+..|+..|.|++-.+.+++ ++.+ ..+.....|..+.+.+. ..+..||+|+ |.-|++
T Consensus 39 ~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~~~~~~~~-~~~~~~d~vi-d~~g~~ 108 (170)
T d1jvba2 39 GLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD----YVINASMQDPLAEIRRI-TESKGVDAVI-DLNNSE 108 (170)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS----EEEETTTSCHHHHHHHH-TTTSCEEEEE-ESCCCH
T ss_pred cceeeeeecccccccccccccccchhhHHHHHH----cCCc----eeeccCCcCHHHHHHHH-hhcccchhhh-cccccc
Confidence 355666777787888899999999999888876 4542 11111223444444433 2345689554 554543
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
..++.+++++++||.+++.
T Consensus 109 -~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 109 -KTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp -HHHTTGGGGEEEEEEEEEC
T ss_pred -hHHHhhhhhcccCCEEEEe
Confidence 5678899999999999874
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.0066 Score=53.31 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=31.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHH
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKS 39 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~ 39 (341)
||+|+..+..+.. +..+|+++|+|+.+++.++++++.
T Consensus 63 cG~g~~~~~~~~~-~~~~v~~~D~S~~~i~~~~~~~~~ 99 (263)
T d2g72a1 63 SGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQE 99 (263)
T ss_dssp CTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHhcc-cCCeEEEEeCCHHHHHHHHHHHhc
Confidence 6899888766663 567999999999999999998763
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.13 E-value=0.013 Score=48.44 Aligned_cols=88 Identities=16% Similarity=0.119 Sum_probs=59.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEecc--HHHHHHHhhhcCCcccEEEeCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFD--ANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~D--A~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
|.|+.++.+++..|+..|++.|.+++-.+++++ .+.. ..+.....| ....+... .+..+|+| +|-=|
T Consensus 39 ~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~----~~i~~~~~~~~~~~~~~~~--~~~G~d~v-ie~~G 107 (174)
T d1e3ia2 39 CVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT----DCLNPRELDKPVQDVITEL--TAGGVDYS-LDCAG 107 (174)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS----EEECGGGCSSCHHHHHHHH--HTSCBSEE-EESSC
T ss_pred hHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCC----cccCCccchhhhhhhHhhh--hcCCCcEE-EEecc
Confidence 457788888888899999999999998777766 5542 111111222 33333332 35578987 56656
Q ss_pred CCHHHHHHHHHhcccC-CEEEEE
Q 019408 81 SDSSFLRTVFNAVKRD-GLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~g-GlL~vt 102 (341)
++ ..++.|++++++| |-+.+-
T Consensus 108 ~~-~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 108 TA-QTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp CH-HHHHHHHHTBCTTTCEEEEC
T ss_pred cc-hHHHHHHHHhhcCCeEEEec
Confidence 54 6788999999996 888873
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.05 E-value=0.02 Score=48.06 Aligned_cols=89 Identities=13% Similarity=0.059 Sum_probs=60.1
Q ss_pred ccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEE-EEeccHHHHHHHhhhcCCcccEEEeCCCCC-
Q 019408 4 CGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWV-VTHFDANRVLSECYLKREFFDLIDIDSFGS- 81 (341)
Q Consensus 4 sG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~-v~~~DA~~~l~~~~~~~~~fDvIdlDPygs- 81 (341)
.|..++.+|+..|+.+|+++|.+++-++.+++ .+.+ .+. ....|..+.+.+. ..+..+|+++ |.-|.
T Consensus 37 vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~----~Ga~-----~~~~~~~~~~~~~i~~~-t~g~g~D~vi-d~vG~~ 105 (195)
T d1kola2 37 VGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGFE-----IADLSLDTPLHEQIAAL-LGEPEVDCAV-DAVGFE 105 (195)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCE-----EEETTSSSCHHHHHHHH-HSSSCEEEEE-ECCCTT
T ss_pred HHHHHHHHHHhhcccceeeecccchhhHhhhh----cccc-----EEEeCCCcCHHHHHHHH-hCCCCcEEEE-ECcccc
Confidence 46666777776899999999999999988876 4541 111 1234555444443 3455689876 43221
Q ss_pred -------------CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 -------------DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 -------------p~~fld~al~~v~~gGlL~vt~ 103 (341)
....++.+++++++||-+.+..
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 106 ARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp CBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred ccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 1267899999999999999753
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.038 Score=44.89 Aligned_cols=87 Identities=9% Similarity=0.177 Sum_probs=58.6
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|..++.+|+..|+ +|++.+.|++..+.+++ .+.+ .-+.....|..+.+.+. ..++.||+|+ |.-|.
T Consensus 40 ~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~----~Ga~----~vi~~~~~~~~~~i~~~-t~~~g~d~v~-d~~g~- 107 (174)
T d1yb5a2 40 GVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAH----EVFNHREVNYIDKIKKY-VGEKGIDIII-EMLAN- 107 (174)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS----EEEETTSTTHHHHHHHH-HCTTCEEEEE-ESCHH-
T ss_pred cccccccccccccCc-ccccccccccccccccc----cCcc----cccccccccHHHHhhhh-hccCCceEEe-ecccH-
Confidence 567778888987887 58888889888777765 5652 11111234444444433 2356788654 66553
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
+.++.++++++++|-+++-
T Consensus 108 -~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 108 -VNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp -HHHHHHHHHEEEEEEEEEC
T ss_pred -HHHHHHHhccCCCCEEEEE
Confidence 7889999999999998863
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.83 E-value=0.029 Score=45.67 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=59.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEE-EeccHHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVV-THFDANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v-~~~DA~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
+|.|..++.+|+..|+ +|++.+.+++-.+.+++ ++.+ .+.. ...|..+.+.+. ..++.||+|+ |.-|
T Consensus 36 g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~----~Ga~-----~vi~~~~~~~~~~v~~~-t~~~g~d~v~-d~~g 103 (183)
T d1pqwa_ 36 GGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE-----YVGDSRSVDFADEILEL-TDGYGVDVVL-NSLA 103 (183)
T ss_dssp SHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS-----EEEETTCSTHHHHHHHH-TTTCCEEEEE-ECCC
T ss_pred CCcccccchhhccccc-cceeeeccccccccccc----cccc-----ccccCCccCHHHHHHHH-hCCCCEEEEE-eccc
Confidence 4678888999987787 56677778877777765 5652 2211 234555555543 2356799877 6655
Q ss_pred CCHHHHHHHHHhcccCCEEEEE
Q 019408 81 SDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 81 sp~~fld~al~~v~~gGlL~vt 102 (341)
. +.++.++++++++|.+...
T Consensus 104 ~--~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 104 G--EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp T--HHHHHHHHTEEEEEEEEEC
T ss_pred c--hHHHHHHHHhcCCCEEEEE
Confidence 3 6788899999999998863
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.72 E-value=0.025 Score=46.18 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=55.7
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|..++.+|+..|+ +|++.+.+++-.+.+++ .+.+ . .+...|..+.+. .++.+|+| +|.-|
T Consensus 39 ~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~----lGa~-----~-~i~~~~~~~~~~----~~~g~D~v-~d~~G-- 100 (171)
T d1iz0a2 39 ALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAE-----E-AATYAEVPERAK----AWGGLDLV-LEVRG-- 100 (171)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCS-----E-EEEGGGHHHHHH----HTTSEEEE-EECSC--
T ss_pred cchhhhhhhhccccc-ccccccccccccccccc----cccc-----e-eeehhhhhhhhh----cccccccc-ccccc--
Confidence 456778888987887 68899999887777765 5652 2 233344433332 24579976 67766
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
+.++.++++++++|-+++
T Consensus 101 -~~~~~~~~~l~~~G~~v~ 118 (171)
T d1iz0a2 101 -KEVEESLGLLAHGGRLVY 118 (171)
T ss_dssp -TTHHHHHTTEEEEEEEEE
T ss_pred -hhHHHHHHHHhcCCcEEE
Confidence 346889999999998886
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.59 E-value=0.03 Score=45.04 Aligned_cols=87 Identities=15% Similarity=0.112 Sum_probs=57.3
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
.+.|...+.+++..|+ +|+++|.+++-.+.+++ .+.+ .-+.....|..+.+.+.. ..+|.++.|.-+
T Consensus 37 G~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~----~Ga~----~~i~~~~~~~~~~~~~~~---~g~~~~i~~~~~- 103 (166)
T d1llua2 37 GGLGHVAVQYARAMGL-HVAAIDIDDAKLELARK----LGAS----LTVNARQEDPVEAIQRDI---GGAHGVLVTAVS- 103 (166)
T ss_dssp SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS----EEEETTTSCHHHHHHHHH---SSEEEEEECCSC-
T ss_pred cccHHHHHHHHHHcCC-ccceecchhhHHHhhhc----cCcc----ccccccchhHHHHHHHhh---cCCccccccccc-
Confidence 3567778888887785 79999999999988765 5542 112222344544444321 235555555433
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
+ +.++.++++++++|.+.+.
T Consensus 104 ~-~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 104 N-SAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp H-HHHHHHHTTEEEEEEEEEC
T ss_pred c-hHHHHHHHHhcCCcEEEEE
Confidence 2 6678999999999999874
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.58 E-value=0.034 Score=44.51 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=58.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
++.|...+++++..|+ +|+..|.+++-.+.+++ ++.+ .-+.....|....+.... + .+|.++.|.-+
T Consensus 37 G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~----~Ga~----~~~~~~~~~~~~~~~~~~--~-~~~~~v~~~~~- 103 (168)
T d1rjwa2 37 GGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD----LVVNPLKEDAAKFMKEKV--G-GVHAAVVTAVS- 103 (168)
T ss_dssp STTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS----EEECTTTSCHHHHHHHHH--S-SEEEEEESSCC-
T ss_pred ccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhh----cCcc----eecccccchhhhhccccc--C-CCceEEeecCC-
Confidence 3567778888887677 69999999999887766 5552 111112345555454432 2 34555567744
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
+ ..++.++++++++|.+++..
T Consensus 104 ~-~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 104 K-PAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp H-HHHHHHHHHEEEEEEEEECC
T ss_pred H-HHHHHHHHHhccCCceEecc
Confidence 2 67899999999999999854
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=94.52 E-value=0.019 Score=49.04 Aligned_cols=92 Identities=11% Similarity=0.069 Sum_probs=76.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
||.|.=||-.|.-.--.+|+.+|.+..-+..+++=++.+++ +++++++..+..+. ...+||+|..=.|++
T Consensus 74 sGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L-----~nv~v~~~R~E~~~-----~~~~fD~V~sRA~~~ 143 (207)
T d1jsxa_ 74 TGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-----ENIEPVQSRVEEFP-----SEPPFDGVISRAFAS 143 (207)
T ss_dssp CTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-----SSEEEEECCTTTSC-----CCSCEEEEECSCSSS
T ss_pred ccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC-----cceeeeccchhhhc-----cccccceehhhhhcC
Confidence 68899999998743346899999999999999998888888 36888998887532 235799999999998
Q ss_pred CHHHHHHHHHhcccCCEEEEEe
Q 019408 82 DSSFLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt~ 103 (341)
...+++-+...++++|.+....
T Consensus 144 ~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 144 LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp HHHHHHHHTTSEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEC
Confidence 8888999999999999998744
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=94.47 E-value=0.0046 Score=54.63 Aligned_cols=58 Identities=10% Similarity=0.005 Sum_probs=43.1
Q ss_pred EEEeeCCHHHHHHH---HHHHHHcCCCCCCCccEEEEeccHHHHHHHh-hhcCCcccEEEeCC-CCC
Q 019408 20 VMANDGNDAHRRVI---LGNLKSIERGSGDEKRWVVTHFDANRVLSEC-YLKREFFDLIDIDS-FGS 81 (341)
Q Consensus 20 V~~~Dis~~A~~~i---~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~-~~~~~~fDvIdlDP-ygs 81 (341)
++..|+++++++.+ ++|++.-++. +.+++.+.|+++..... ...+..+++|+.+| ||.
T Consensus 117 i~G~D~d~~ai~~A~~~r~n~~~Agl~----~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGE 179 (249)
T d1o9ga_ 117 RFGKPSYLEAAQAARRLRERLTAEGGA----LPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGE 179 (249)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHTTSS----CCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGG
T ss_pred ccccccCHHHHHHHHHHHHHHHHcCCC----ceeeeeecchhccCcchhccCCCCCCEEEeCCCccc
Confidence 46789999999988 5688887874 57888999987654321 12345679999999 874
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.29 E-value=0.052 Score=44.16 Aligned_cols=89 Identities=13% Similarity=0.065 Sum_probs=62.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
.+.|..++.+++..|+..|+..|.+++-.+.+++ .+.. .-+.....|..+.+.+.. +..||+|+-- =|+
T Consensus 38 G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~Ga~----~~i~~~~~~~~~~i~~~t--~gg~D~vid~-~G~ 106 (174)
T d1f8fa2 38 GAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT----HVINSKTQDPVAAIKEIT--DGGVNFALES-TGS 106 (174)
T ss_dssp SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS----EEEETTTSCHHHHHHHHT--TSCEEEEEEC-SCC
T ss_pred CHHHhhhhhcccccccceeeeeccHHHHHHHHHH----cCCe----EEEeCCCcCHHHHHHHHc--CCCCcEEEEc-CCc
Confidence 3567777888887899999999999998888876 4542 112222356666666542 3479976544 343
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
+ +.++.++++++++|-+.+.
T Consensus 107 ~-~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 107 P-EILKQGVDALGILGKIAVV 126 (174)
T ss_dssp H-HHHHHHHHTEEEEEEEEEC
T ss_pred H-HHHHHHHhcccCceEEEEE
Confidence 3 6778999999999999874
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.28 E-value=0.022 Score=49.97 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=42.2
Q ss_pred EEEEeccHHHHHHHhhhcCCcccEEEeCC-CCCC----------HH-------HHHHHHHhcccCCEEEEEecC
Q 019408 50 WVVTHFDANRVLSECYLKREFFDLIDIDS-FGSD----------SS-------FLRTVFNAVKRDGLLYLTSTD 105 (341)
Q Consensus 50 ~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygsp----------~~-------fld~al~~v~~gGlL~vt~TD 105 (341)
-+++++|+.++|..+. .+..|+|+.|| |+.. .. .+..+.+.|+++|.+++...|
T Consensus 13 ~~l~~GD~le~l~~l~--~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~ 84 (320)
T d1booa_ 13 GSMYIGDSLELLESFP--EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 84 (320)
T ss_dssp EEEEESCHHHHGGGSC--SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CEEEehhHHHHHhhCc--cCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccc
Confidence 4789999999998763 46899999999 8652 12 244677889999999986654
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.21 E-value=0.066 Score=43.33 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=58.8
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
+.|...+..++..|+..|+..|.+++-.+.+++ .+. +.+.....|..+...+. ..+..+|+|+ |.-|.+
T Consensus 43 ~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga-----~~~i~~~~~~~~~~~~~-~~~~g~d~vi-d~~g~~ 111 (172)
T d1h2ba2 43 GLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGA-----DHVVDARRDPVKQVMEL-TRGRGVNVAM-DFVGSQ 111 (172)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTC-----SEEEETTSCHHHHHHHH-TTTCCEEEEE-ESSCCH
T ss_pred hHHHHHHHHHHhhcCcccccccchhHHHHHHhh----ccc-----ceeecCcccHHHHHHHh-hCCCCceEEE-EecCcc
Confidence 456666777776799999999999998888775 443 22222233433333332 2345688654 555543
Q ss_pred HHHHHHHHHhcccCCEEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~vt 102 (341)
..++.++++++++|-+.+.
T Consensus 112 -~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 112 -ATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp -HHHHHGGGGEEEEEEEEEC
T ss_pred -hHHHHHHHHHhCCCEEEEE
Confidence 5689999999999999874
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.00 E-value=0.024 Score=48.23 Aligned_cols=51 Identities=18% Similarity=0.405 Sum_probs=38.8
Q ss_pred EEEeccHHHHHHHhhhcCCcccEEEeCC-CCCC----------HH-------HHHHHHHhcccCCEEEEEe
Q 019408 51 VVTHFDANRVLSECYLKREFFDLIDIDS-FGSD----------SS-------FLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 51 ~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygsp----------~~-------fld~al~~v~~gGlL~vt~ 103 (341)
+++++|+.++|..+. .+.+|+|+.|| |+.. .. .++.+.+.|+++|.+.+..
T Consensus 6 ~i~~gDcle~l~~lp--d~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVE--NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp SEEECCHHHHHHHSC--TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCc--CCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 378999999999763 45799999998 7642 12 3446788999999888644
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=93.80 E-value=0.052 Score=43.98 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=59.9
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSD 82 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp 82 (341)
|.|..++.+|+..|+ +|++.|.|++-.+.+++ .+.+ .-+.....|..+-+.+. ..++.+|+ ++|.=|.
T Consensus 40 ~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~----lGa~----~vi~~~~~d~~~~v~~~-t~g~g~d~-v~d~~g~- 107 (179)
T d1qora2 40 GVGLIACQWAKALGA-KLIGTVGTAQKAQSALK----AGAW----QVINYREEDLVERLKEI-TGGKKVRV-VYDSVGR- 107 (179)
T ss_dssp HHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS----EEEETTTSCHHHHHHHH-TTTCCEEE-EEECSCG-
T ss_pred ccchHHHHHHHHhCC-eEeecccchHHHHHHHh----cCCe----EEEECCCCCHHHHHHHH-hCCCCeEE-EEeCccH-
Confidence 467888999987776 69999999999999875 4552 11111235666666554 34667885 5666443
Q ss_pred HHHHHHHHHhcccCCEEEE
Q 019408 83 SSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 83 ~~fld~al~~v~~gGlL~v 101 (341)
+.++.++.+++++|-+.+
T Consensus 108 -~~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 108 -DTWERSLDCLQRRGLMVS 125 (179)
T ss_dssp -GGHHHHHHTEEEEEEEEE
T ss_pred -HHHHHHHHHHhcCCeeee
Confidence 567889999999997765
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.77 E-value=0.032 Score=48.07 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=41.5
Q ss_pred cEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCCC--------------HHHHHHHHHhcccCCEEEEEecC
Q 019408 49 RWVVTHFDANRVLSECYLKREFFDLIDIDS-FGSD--------------SSFLRTVFNAVKRDGLLYLTSTD 105 (341)
Q Consensus 49 ~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygsp--------------~~fld~al~~v~~gGlL~vt~TD 105 (341)
+..++.+|+.++|+.+. .+..|+|+.|| |+.. .+.+..+.+.|+++|.+++...+
T Consensus 4 ~~~~~~~D~le~l~~l~--d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~ 73 (279)
T d1eg2a_ 4 RHVYDVCDCLDTLAKLP--DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL 73 (279)
T ss_dssp EEEEEECCHHHHHHTSC--TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred cceEEechHHHHHhhCc--CCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCc
Confidence 44577899999998763 46799999999 7531 12234677899999999986654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.74 E-value=0.039 Score=45.31 Aligned_cols=89 Identities=9% Similarity=-0.022 Sum_probs=54.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEecc-HHHHHHHhhhcCCcccEEEeCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFD-ANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~D-A~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
.|.|+.++.+++..|+.+|+++|.+++-+++.++ .+.+ ..+.....| ..+.+.+. ..+..+|+|+..- |
T Consensus 39 GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~----~GA~----~~in~~~~~~~~~~~~~~-~~g~G~d~vi~~~-g 108 (176)
T d1d1ta2 39 GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA----VGAT----ECISPKDSTKPISEVLSE-MTGNNVGYTFEVI-G 108 (176)
T ss_dssp SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----HTCS----EEECGGGCSSCHHHHHHH-HHTSCCCEEEECS-C
T ss_pred CchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh----cCCc----EEECccccchHHHHHHHH-hccccceEEEEeC-C
Confidence 4678888888888899999999999999998877 5542 111111222 12222222 2356799776665 3
Q ss_pred CCHHHHHHHHHhcc-cCCEEEE
Q 019408 81 SDSSFLRTVFNAVK-RDGLLYL 101 (341)
Q Consensus 81 sp~~fld~al~~v~-~gGlL~v 101 (341)
.+ +-+..++..+. .+|-+.+
T Consensus 109 ~~-~~~~~a~~~~~~~~G~~v~ 129 (176)
T d1d1ta2 109 HL-ETMIDALASCHMNYGTSVV 129 (176)
T ss_dssp CH-HHHHHHHTTSCTTTCEEEE
T ss_pred ch-HHHHHHHHHhhcCCeEEEE
Confidence 23 44555666565 4477765
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=93.43 E-value=0.064 Score=43.80 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=58.4
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHH-HHHHhhhcCCcccEEEeCCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANR-VLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~-~l~~~~~~~~~fDvIdlDPygs 81 (341)
|.|..++..++..|+ +|++.+.+++..+.+++ .+.+ +.+.....|..+ .+.. ..+..+|+ ++|+=|.
T Consensus 41 gvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~----~Ga~----~vi~~~~~~~~~~~~~~--~~~~Gvd~-v~D~vG~ 108 (182)
T d1v3va2 41 AVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGFD----AAFNYKTVNSLEEALKK--ASPDGYDC-YFDNVGG 108 (182)
T ss_dssp HHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS----EEEETTSCSCHHHHHHH--HCTTCEEE-EEESSCH
T ss_pred chhHHHHHHHHccCC-EEEEeCCCHHHHHHHHh----hhhh----hhcccccccHHHHHHHH--hhcCCCce-eEEecCc
Confidence 467888899987787 79999999998888877 4442 111111222222 2322 23456898 5788663
Q ss_pred CHHHHHHHHHhcccCCEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~v 101 (341)
+.++.++++++++|-+.+
T Consensus 109 --~~~~~~~~~l~~~G~~v~ 126 (182)
T d1v3va2 109 --EFLNTVLSQMKDFGKIAI 126 (182)
T ss_dssp --HHHHHHGGGEEEEEEEEE
T ss_pred --hhhhhhhhhccCCCeEEe
Confidence 788999999999999886
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=93.43 E-value=0.052 Score=44.36 Aligned_cols=88 Identities=11% Similarity=0.082 Sum_probs=57.5
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEecc--HHHHHHHhhhcCCcccEEEeCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFD--ANRVLSECYLKREFFDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~D--A~~~l~~~~~~~~~fDvIdlDPy 79 (341)
.|.|+.++..++..|+.+|++.|.+++-.+++++ ++.. .-+.....| ..+.+.. ..+..+|+|+-.-
T Consensus 37 GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lGa~----~~i~~~~~d~~~~~~~~~--~~~~G~d~vid~~- 105 (174)
T d1p0fa2 37 GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT----ECLNPKDYDKPIYEVICE--KTNGGVDYAVECA- 105 (174)
T ss_dssp SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS----EEECGGGCSSCHHHHHHH--HTTSCBSEEEECS-
T ss_pred CchhHHHHHHHHHcCCceeeccCChHHHHHHHHH----cCCc----EEEcCCCchhHHHHHHHH--hcCCCCcEEEEcC-
Confidence 3567788888887899999999999999988876 5652 111112234 3344333 2345789887654
Q ss_pred CCCHHHHHHHHHhccc-CCEEEE
Q 019408 80 GSDSSFLRTVFNAVKR-DGLLYL 101 (341)
Q Consensus 80 gsp~~fld~al~~v~~-gGlL~v 101 (341)
|.+ +-++.++..+++ +|.+.+
T Consensus 106 g~~-~~~~~~~~~~~~~~G~~v~ 127 (174)
T d1p0fa2 106 GRI-ETMMNALQSTYCGSGVTVV 127 (174)
T ss_dssp CCH-HHHHHHHHTBCTTTCEEEE
T ss_pred CCc-hHHHHHHHHHHHhcCceEE
Confidence 322 566677777766 477775
|
| >d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein PrrA, N-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.02 E-value=0.65 Score=35.09 Aligned_cols=80 Identities=15% Similarity=0.076 Sum_probs=51.4
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---CCCCHHHHHHHHHhc-c
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS---FGSDSSFLRTVFNAV-K 94 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP---ygsp~~fld~al~~v-~ 94 (341)
+|..+|-++...+.+++=++..|. .+. ...|..+.+..... ..||+|.+|- =.....++.. ++.. .
T Consensus 3 kILiVDD~~~~~~~l~~~L~~~g~------~v~-~a~~~~eal~~~~~--~~~dlvl~D~~mP~~~G~el~~~-ir~~~~ 72 (121)
T d1ys7a2 3 RVLVVDDDSDVLASLERGLRLSGF------EVA-TAVDGAEALRSATE--NRPDAIVLDINMPVLDGVSVVTA-LRAMDN 72 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC------EEE-EESSHHHHHHHHHH--SCCSEEEEESSCSSSCHHHHHHH-HHHTTC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCC------EEE-EECCHHHHHHHHHh--CCCCEEEEEeeccCcccHHHHHH-HHhcCC
Confidence 689999999999999999998776 333 45566666655433 4799999995 2222244433 3332 2
Q ss_pred cCCEEEEEecCCCC
Q 019408 95 RDGLLYLTSTDGYS 108 (341)
Q Consensus 95 ~gGlL~vt~TD~~~ 108 (341)
.=-++.+|+.+...
T Consensus 73 ~~piI~lt~~~~~~ 86 (121)
T d1ys7a2 73 DVPVCVLSARSSVD 86 (121)
T ss_dssp CCCEEEEECCCTTT
T ss_pred CCEEEEEEeeCCHH
Confidence 33566777654433
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=92.91 E-value=0.14 Score=42.48 Aligned_cols=88 Identities=20% Similarity=0.101 Sum_probs=58.9
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe---ccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH---FDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~---~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
.|.|.=+-..+. .+ .+|+++|.++.|++.+++- .. ....+++ .|....+.... -+.+|.|.+|-
T Consensus 27 ~G~GGhs~~iL~-~~-~~viaiD~D~~ai~~a~~~----~~-----~~~~~~~~~f~~~~~~l~~~~--~~~vdgIl~DL 93 (182)
T d1wg8a2 27 LGGAGHARGILE-RG-GRVIGLDQDPEAVARAKGL----HL-----PGLTVVQGNFRHLKRHLAALG--VERVDGILADL 93 (182)
T ss_dssp CTTSHHHHHHHH-TT-CEEEEEESCHHHHHHHHHT----CC-----TTEEEEESCGGGHHHHHHHTT--CSCEEEEEEEC
T ss_pred CCCcHHHHHHhc-cc-CcEEEEhhhhhHHHHHhhc----cc-----cceeEeehHHHHHHHHHHHcC--CCccCEEEEEc
Confidence 477877766665 44 4799999999999887652 11 2445554 44445444432 35799999996
Q ss_pred CCCCHH--------------HHHHHHHhcccCCEEEEEe
Q 019408 79 FGSDSS--------------FLRTVFNAVKRDGLLYLTS 103 (341)
Q Consensus 79 ygsp~~--------------fld~al~~v~~gGlL~vt~ 103 (341)
|-.+. .|+.++..+++||.+.+..
T Consensus 94 -GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~ 131 (182)
T d1wg8a2 94 -GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIA 131 (182)
T ss_dssp -SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Confidence 32222 3678889999999999744
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=92.24 E-value=0.17 Score=44.66 Aligned_cols=90 Identities=20% Similarity=0.169 Sum_probs=64.0
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC-CCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS-FGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP-ygs 81 (341)
||-..+-..+. .-++.+++|..|...+.+++|+.. ..++.|.+.|.+..+....-..++=-+|.||| |-.
T Consensus 92 GSP~ia~~llR--~~Drl~l~ELHp~e~~~L~~~~~~-------~~~~~v~~~DG~~~l~allPP~~rRgLVLIDPpYE~ 162 (271)
T d2oo3a1 92 GSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHF-------NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYER 162 (271)
T ss_dssp CHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCT-------TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCS
T ss_pred CCHHHHHHhCC--CCCceEEeecCHHHHHHHHHHhcc-------CCCceEEcCchHHHHHhhCCCCCCceEEEecCCcCC
Confidence 45555545544 468999999999999999988652 14788999999999988754455667999998 887
Q ss_pred CHHHHH--HH-HHhcc--cCCEEEE
Q 019408 82 DSSFLR--TV-FNAVK--RDGLLYL 101 (341)
Q Consensus 82 p~~fld--~a-l~~v~--~gGlL~v 101 (341)
..+|-. .+ .++++ +.|+..|
T Consensus 163 k~ey~~v~~~l~~a~kr~~~g~~~i 187 (271)
T d2oo3a1 163 KEEYKEIPYAIKNAYSKFSTGLYCV 187 (271)
T ss_dssp TTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEE
Confidence 767632 11 22222 4566665
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.18 E-value=0.028 Score=45.52 Aligned_cols=85 Identities=15% Similarity=0.115 Sum_probs=53.7
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEe-CCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDI-DSFGS 81 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdl-DPygs 81 (341)
+.|..++.+|+..|+ +|+++|.|++-.+.+++ +|.+ .+ +...+-.++.... .+.||+|+. ..-+.
T Consensus 38 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~----lGa~-----~~-i~~~~~~~~~~~~---~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 38 GIGSMGTLISKAMGA-ETYVISRSSRKREDAMK----MGAD-----HY-IATLEEGDWGEKY---FDTFDLIVVCASSLT 103 (168)
T ss_dssp HHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCS-----EE-EEGGGTSCHHHHS---CSCEEEEEECCSCST
T ss_pred CcchhHHHHhhhccc-cccccccchhHHHHhhc----cCCc-----EE-eeccchHHHHHhh---hcccceEEEEecCCc
Confidence 467888888888888 58999999998888765 5652 22 2222222333322 346896643 22221
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
+ .-++.++++++++|.+.+.
T Consensus 104 ~-~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 104 D-IDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp T-CCTTTGGGGEEEEEEEEEC
T ss_pred c-chHHHHHHHhhccceEEEe
Confidence 1 1245689999999999864
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.16 E-value=0.09 Score=43.28 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=54.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|.|..+|..|+..|+. |++.-.|++-.+.+++ .+.+ .+.-...+..+... ...++.||+ ++|+-|-
T Consensus 42 GGVG~~aiQlak~~Ga~-Viat~~s~~k~~~~~~----lGa~-----~vi~~~~~~~~~~~--~~~~~gvD~-vid~vgg 108 (176)
T d1xa0a2 42 GGVGSLAVSMLAKRGYT-VEASTGKAAEHDYLRV----LGAK-----EVLAREDVMAERIR--PLDKQRWAA-AVDPVGG 108 (176)
T ss_dssp SHHHHHHHHHHHHTTCC-EEEEESCTTCHHHHHH----TTCS-----EEEECC-----------CCSCCEEE-EEECSTT
T ss_pred chHHHHHHHHHHHcCCc-eEEecCchHHHHHHHh----cccc-----eeeecchhHHHHHH--HhhccCcCE-EEEcCCc
Confidence 46788899999877876 6778787777777764 4542 22111222222222 234568995 6778554
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
+.++.++++|++||-+.+.
T Consensus 109 --~~~~~~l~~l~~~Griv~~ 127 (176)
T d1xa0a2 109 --RTLATVLSRMRYGGAVAVS 127 (176)
T ss_dssp --TTHHHHHHTEEEEEEEEEC
T ss_pred --hhHHHHHHHhCCCceEEEe
Confidence 6788999999999999863
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.94 E-value=0.13 Score=41.13 Aligned_cols=87 Identities=15% Similarity=0.080 Sum_probs=60.0
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEE---eccHHHHHHHhhhcCCcccEEEeCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVT---HFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~---~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+|.|..++.+++..|+..|++.|.+++-.+++++ ++.+ .+... ..++.+.+.+. .+..+|+|+ |.
T Consensus 38 GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~----lGa~-----~~i~~~~~~~~~~~~~~~~--~~~g~D~vi-d~ 105 (176)
T d2fzwa2 38 GGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT-----ECINPQDFSKPIQEVLIEM--TDGGVDYSF-EC 105 (176)
T ss_dssp SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS-----EEECGGGCSSCHHHHHHHH--TTSCBSEEE-EC
T ss_pred hhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH----hCCc-----EEEeCCchhhHHHHHHHHH--cCCCCcEee-ec
Confidence 5778899999988899999999999999888775 5542 21111 23455555543 245689765 44
Q ss_pred CCCCHHHHHHHHHhcccCCEEEE
Q 019408 79 FGSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 79 ygsp~~fld~al~~v~~gGlL~v 101 (341)
=|.+ ..++.++.++++||.+.+
T Consensus 106 ~G~~-~~~~~~~~~~~~g~~~~~ 127 (176)
T d2fzwa2 106 IGNV-KVMRAALEACHKGWGVSV 127 (176)
T ss_dssp SCCH-HHHHHHHHTBCTTTCEEE
T ss_pred CCCH-HHHHHHHHhhcCCceeEE
Confidence 4543 677889999998866553
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=91.62 E-value=0.13 Score=41.46 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=57.2
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe----ccHHHHHHHhhhcCCcccEEEeC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH----FDANRVLSECYLKREFFDLIDID 77 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~----~DA~~~l~~~~~~~~~fDvIdlD 77 (341)
.|.|..++..++..|+.+|+++|.+++-.+.+++ ++.. . .+.. .+....+... .+..+|+ ++|
T Consensus 38 GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~----~Ga~-----~-~i~~~~~~~~~~~~~~~~--~~~G~D~-vid 104 (176)
T d2jhfa2 38 GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT-----E-CVNPQDYKKPIQEVLTEM--SNGGVDF-SFE 104 (176)
T ss_dssp SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS-----E-EECGGGCSSCHHHHHHHH--TTSCBSE-EEE
T ss_pred CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH----hCCe-----e-EEecCCchhHHHHHHHHH--hcCCCCE-EEe
Confidence 3566777777877899999999999999888877 4442 1 1221 1233444333 3457896 566
Q ss_pred CCCCCHHHHHHHHHhcccC-CEEEEE
Q 019408 78 SFGSDSSFLRTVFNAVKRD-GLLYLT 102 (341)
Q Consensus 78 Pygsp~~fld~al~~v~~g-GlL~vt 102 (341)
..|.+ ...+.++..++.+ |.+.+.
T Consensus 105 ~~G~~-~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 105 VIGRL-DTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp CSCCH-HHHHHHHHHBCTTTCEEEEC
T ss_pred cCCch-hHHHHHHHHHhcCCcceEEe
Confidence 66654 5667788888876 666654
|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Bacillus subtilis [TaxId: 1423]
Probab=91.02 E-value=1.8 Score=32.20 Aligned_cols=79 Identities=20% Similarity=0.189 Sum_probs=50.5
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC--C-CCHHHHHHHHHhcc
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF--G-SDSSFLRTVFNAVK 94 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy--g-sp~~fld~al~~v~ 94 (341)
++|..+|-++...+.+++-++..|. .+. ...|..+.+..... ..||+|++|=- + +-..++.. ++.-.
T Consensus 3 krILiVDDd~~~~~~l~~~L~~~g~------~v~-~a~~~~~al~~l~~--~~~dlillD~~mp~~~G~~~~~~-~r~~~ 72 (121)
T d1mvoa_ 3 KKILVVDDEESIVTLLQYNLERSGY------DVI-TASDGEEALKKAET--EKPDLIVLDVMLPKLDGIEVCKQ-LRQQK 72 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC------EEE-EESSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHH-HHHTT
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCC------EEE-EECCHHHHHHHHhc--ccccEEEecccccCCCCchhhhh-hhccC
Confidence 4799999999999999999998876 232 34555555554432 47999999962 2 11233332 33333
Q ss_pred c-CCEEEEEecCC
Q 019408 95 R-DGLLYLTSTDG 106 (341)
Q Consensus 95 ~-gGlL~vt~TD~ 106 (341)
+ -.++.+|+.+.
T Consensus 73 ~~~~ii~lt~~~~ 85 (121)
T d1mvoa_ 73 LMFPILMLTAKDE 85 (121)
T ss_dssp CCCCEEEEECTTC
T ss_pred CCCEEEEEEeeCC
Confidence 2 35677777643
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=90.64 E-value=0.39 Score=39.10 Aligned_cols=89 Identities=12% Similarity=0.093 Sum_probs=51.1
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHh-hhcCCcccEEE
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSEC-YLKREFFDLID 75 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~-~~~~~~fDvId 75 (341)
|.|..+|.+|+..|++-|..+. +++..+-..+-++..+.+ . ++.-|.. ....+. ...+..+|+|+
T Consensus 41 ~vG~~aiqlAk~~Ga~vI~~v~-~~~~~~~~~~~~~~lGad-----~--vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~ 112 (189)
T d1gu7a2 41 AVGKYASQIGKLLNFNSISVIR-DRPNLDEVVASLKELGAT-----Q--VITEDQNNSREFGPTIKEWIKQSGGEAKLAL 112 (189)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEC-CCTTHHHHHHHHHHHTCS-----E--EEEHHHHHCGGGHHHHHHHHHHHTCCEEEEE
T ss_pred hHHHHHHHHHhhcCCeEEEEEe-cccccchHHhhhhhcccc-----E--EEeccccchhHHHHHHHHHHhhccCCceEEE
Confidence 4567888999988986444443 322333333334446652 2 2222211 122221 12345677765
Q ss_pred eCCCCCCHHHHHHHHHhcccCCEEEEE
Q 019408 76 IDSFGSDSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 76 lDPygsp~~fld~al~~v~~gGlL~vt 102 (341)
|+-|. +.+..++++|+++|-+.+.
T Consensus 113 -D~vg~--~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 113 -NCVGG--KSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp -ESSCH--HHHHHHHHTSCTTCEEEEC
T ss_pred -ECCCc--chhhhhhhhhcCCcEEEEE
Confidence 88663 6778899999999998863
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.28 E-value=0.97 Score=38.47 Aligned_cols=133 Identities=18% Similarity=0.180 Sum_probs=74.0
Q ss_pred cccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCcccE
Q 019408 3 GCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFDL 73 (341)
Q Consensus 3 gsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fDv 73 (341)
||+..|...|++ .|+ +|+++|.|++..+.+.+.++..+. ++..+..|+. +++.....+-.+.|+
T Consensus 9 as~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~------~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 81 (255)
T d1gega_ 9 AGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGG------HAVAVKVDVSDRDQVFAAVEQARKTLGGFDV 81 (255)
T ss_dssp TTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC------CEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred CccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC------cEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence 555556555443 577 699999999999988888876543 4555566643 334433333346798
Q ss_pred EEeCC-CCCCHHHH----------------------HHHHHh-c--ccCCEEEEEecCCCCCCCCCchhHHhhhccccCC
Q 019408 74 IDIDS-FGSDSSFL----------------------RTVFNA-V--KRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILP 127 (341)
Q Consensus 74 IdlDP-ygsp~~fl----------------------d~al~~-v--~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~ 127 (341)
++--- +..+.+|. ..++.. . +.+|.+..+++.. +..+....--|+++-
T Consensus 82 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~----~~~~~~~~~~Y~asK-- 155 (255)
T d1gega_ 82 IVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQA----GHVGNPELAVYSSSK-- 155 (255)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG----GTSCCTTBHHHHHHH--
T ss_pred EEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchh----hcccCcccccchhCH--
Confidence 87443 21111111 133332 2 2456555545422 222333333454432
Q ss_pred CCCchhhhHHHHHHHHHHHHHhcCCcE
Q 019408 128 MPYSNEIGLRMLIGGAVREASAQGYHV 154 (341)
Q Consensus 128 ~~~~~E~~lR~ll~~i~~~Aa~~~~~i 154 (341)
.|+.-|...++.+.+++|..+
T Consensus 156 ------aal~~ltk~lA~el~~~gIrV 176 (255)
T d1gega_ 156 ------FAVRGLTQTAARDLAPLGITV 176 (255)
T ss_dssp ------HHHHHHHHHHHHHHGGGTEEE
T ss_pred ------HHHHhhHHHHHHHhhhhCcEE
Confidence 678888888888877775433
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=90.24 E-value=1.5 Score=37.41 Aligned_cols=140 Identities=11% Similarity=0.071 Sum_probs=80.1
Q ss_pred cccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCcccE
Q 019408 3 GCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFDL 73 (341)
Q Consensus 3 gsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fDv 73 (341)
||+..|...+.+ .|+ +|+++|.+++.++-+.+.++..+.. ..++..+..|. .+++.+...+-.+.|+
T Consensus 13 as~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~---~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDi 88 (264)
T d1spxa_ 13 SSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVS---EQNVNSVVADVTTDAGQDEILSTTLGKFGKLDI 88 (264)
T ss_dssp TTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC---GGGEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred cCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC---cCceEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 556666555443 586 5999999999999988888876542 23566666654 3444444333346788
Q ss_pred EEeCC-----------CC--CCHHH---H-----------HHHHHhcc--cCCEEEEEecCCCCCCCCCchhHHhhhccc
Q 019408 74 IDIDS-----------FG--SDSSF---L-----------RTVFNAVK--RDGLLYLTSTDGYSSGGHRPNNSLASYGAY 124 (341)
Q Consensus 74 IdlDP-----------yg--sp~~f---l-----------d~al~~v~--~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~ 124 (341)
++--- +- +...| + ..++..++ .||++.++++-. +..+....--|++.
T Consensus 89 lvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~----~~~~~~~~~~Y~as 164 (264)
T d1spxa_ 89 LVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIAS----GLHATPDFPYYSIA 164 (264)
T ss_dssp EEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTS----SSSCCTTSHHHHHH
T ss_pred eecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeecc----ccccCCCchhhhhh
Confidence 76542 10 11111 0 13344443 467777655421 22223333345443
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEE
Q 019408 125 ILPMPYSNEIGLRMLIGGAVREASAQGYHVSPLF 158 (341)
Q Consensus 125 ~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~ 158 (341)
- -|+.-|...++++.+.+|+.+--+.
T Consensus 165 K--------aal~~lt~~lA~el~~~gIrVN~V~ 190 (264)
T d1spxa_ 165 K--------AAIDQYTRNTAIDLIQHGIRVNSIS 190 (264)
T ss_dssp H--------HHHHHHHHHHHHHHGGGTCEEEEEE
T ss_pred h--------hhHHHHHHHHHHHhcccCeEEEEEe
Confidence 2 6888888888888888876554433
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.10 E-value=0.36 Score=37.05 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=41.9
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEe--ccHHHHHHHhhhcCCcccEEEeCC
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTH--FDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~--~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+|..+|-|+...+.+++-++..|.. .++... .+|.+.+++....++.||+|++|=
T Consensus 3 rVLvVDD~~~~~~~l~~~L~~~g~~-----~v~~a~~g~eAl~~l~~~~~~~~~~dlillD~ 59 (128)
T d2r25b1 3 KILVVEDNHVNQEVIKRMLNLEGIE-----NIELACDGQEAFDKVKELTSKGENYNMIFMDV 59 (128)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCC-----CEEEESSHHHHHHHHHHHHHHTCCCSEEEECS
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCe-----EEEEEcChHHHHHHHHhhhhccCCCCEEEEEe
Confidence 5889999999999999999988762 344322 456666665555567899999994
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=88.99 E-value=0.75 Score=34.75 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=64.5
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---CCCCHHHHHHHHHhccc
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS---FGSDSSFLRTVFNAVKR 95 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP---ygsp~~fld~al~~v~~ 95 (341)
+|..+|=++...+.+++-++..|. ++. ...|..+.+.... ...||+|++|= -.+-..++...-+.-..
T Consensus 5 ~ILIVDDd~~~~~~l~~~L~~~g~------~v~-~a~~~~~a~~~l~--~~~~dlii~D~~mp~~~G~el~~~l~~~~~~ 75 (123)
T d1krwa_ 5 IVWVVDDDSSIRWVLERALAGAGL------TCT-TFENGNEVLAALA--SKTPDVLLSDIRMPGMDGLALLKQIKQRHPM 75 (123)
T ss_dssp EEEEESSSHHHHHHHHHHHHHTTC------EEE-EESSSHHHHHHHT--TCCCSEEEECCSSSSSTTHHHHHHHHHHSSS
T ss_pred EEEEEECCHHHHHHHHHHHHHCCC------EEE-EeCCHHHHHHHHH--hCCCCEEEehhhcCCchHHHHHHHHHHhCCC
Confidence 589999999999999999998776 333 3455555555443 35799999994 12223444433222222
Q ss_pred CCEEEEEecCCCCCCCCCchhHHhhhcccc-CCCCCchhhhHHHHHHHHHHHHHhc
Q 019408 96 DGLLYLTSTDGYSSGGHRPNNSLASYGAYI-LPMPYSNEIGLRMLIGGAVREASAQ 150 (341)
Q Consensus 96 gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~-~~~~~~~E~~lR~ll~~i~~~Aa~~ 150 (341)
--++.+|+.+.. .......+.|+.- +..| +....|+..+.++-++|
T Consensus 76 ~piI~~t~~~~~-----~~~~~a~~~Ga~dyl~KP----~~~~eL~~~i~~~l~~~ 122 (123)
T d1krwa_ 76 LPVIIMTAHSDL-----DAAVSAYQQGAFDYLPKP----FDIDEAVALVERAISHY 122 (123)
T ss_dssp CCEEESCCCSCH-----HHHHHHHHHTEEEECSSC----CHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCH-----HHHHHHHHcCCCeEEeCc----CCHHHHHHHHHHHHHcc
Confidence 234544443111 1122333456542 2334 34555666666665554
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=88.92 E-value=1.2 Score=38.07 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=42.0
Q ss_pred cccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhc-CCccc
Q 019408 3 GCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLK-REFFD 72 (341)
Q Consensus 3 gsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~-~~~fD 72 (341)
||+..|...+.+ .|+ +|+++|.|++.++-+.+-++..+. ++..+..|+ .+++.+...+ +.+.|
T Consensus 16 as~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~------~~~~~~~Dv~~~~~v~~~~~~~~~~~~~~id 88 (259)
T d2ae2a_ 16 GSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGF------KVEASVCDLSSRSERQELMNTVANHFHGKLN 88 (259)
T ss_dssp CSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC------EEEEEECCTTCHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC------CceEEEeeCCCHHHHHHHHHHHHHHhCCCce
Confidence 455555444432 577 599999999998888877775543 445555554 2333333222 33679
Q ss_pred EEEeCC
Q 019408 73 LIDIDS 78 (341)
Q Consensus 73 vIdlDP 78 (341)
+++--.
T Consensus 89 ilvnnA 94 (259)
T d2ae2a_ 89 ILVNNA 94 (259)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887654
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=88.75 E-value=1.8 Score=36.39 Aligned_cols=133 Identities=18% Similarity=0.087 Sum_probs=79.4
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fD 72 (341)
.||+..|-..|.+ .|+ +|++++.|.+.++...+.+ + .++..++.|. .+++.+...+-.+.|
T Consensus 12 Gas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~------~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iD 81 (241)
T d2a4ka1 12 GAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAAL---E------AEAIAVVADVSDPKAVEAVFAEALEEFGRLH 81 (241)
T ss_dssp STTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC---C------SSEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C------CceEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence 4666666666554 576 6899999998765444432 2 2444555553 333433333224678
Q ss_pred EEEeCC-CCCCHHHH----------------------HHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCC
Q 019408 73 LIDIDS-FGSDSSFL----------------------RTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMP 129 (341)
Q Consensus 73 vIdlDP-ygsp~~fl----------------------d~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~ 129 (341)
+++-.- ...+.++. ..++..+++++.+.+.++ .+..+...+.-|+++-
T Consensus 82 iLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss-----~a~~~~~~~~~Y~~sK---- 152 (241)
T d2a4ka1 82 GVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS-----VAGLGAFGLAHYAAGK---- 152 (241)
T ss_dssp EEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC-----CTTCCHHHHHHHHHCS----
T ss_pred Eeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccc-----cccccccCccccchhh----
Confidence 776653 11111111 144566777888777665 3444445666787754
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCcEEEE
Q 019408 130 YSNEIGLRMLIGGAVREASAQGYHVSPL 157 (341)
Q Consensus 130 ~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl 157 (341)
.+++-|...++++.+.+|..+--+
T Consensus 153 ----~al~~lt~~lA~el~~~gIrvN~I 176 (241)
T d2a4ka1 153 ----LGVVGLARTLALELARKGVRVNVL 176 (241)
T ss_dssp ----SHHHHHHHHHHHHHTTTTCEEEEE
T ss_pred ----HHHHHHHHHHHHHHhHhCCEEeee
Confidence 789999999999988887655444
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=88.54 E-value=0.11 Score=42.38 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=55.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHh--hhcCCcccEEEeCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSEC--YLKREFFDLIDIDSF 79 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~--~~~~~~fDvIdlDPy 79 (341)
+|.|..++.+|+..|++ |++...|++-.+.+++ .+.+ . ++.. .+...+. ...++.+|+ .+|+-
T Consensus 34 GgVG~~avQlAk~~Ga~-Viat~~s~~k~~~~~~----lGad-----~--vi~~--~~~~~~~~~~~~~~gvd~-vid~v 98 (167)
T d1tt7a2 34 GGVGGIAVSMLNKRGYD-VVASTGNREAADYLKQ----LGAS-----E--VISR--EDVYDGTLKALSKQQWQG-AVDPV 98 (167)
T ss_dssp SHHHHHHHHHHHHHTCC-EEEEESSSSTHHHHHH----HTCS-----E--EEEH--HHHCSSCCCSSCCCCEEE-EEESC
T ss_pred chHHHHHHHHHHHcCCc-eEEEecCHHHHHHHHh----hccc-----c--eEec--cchhchhhhcccCCCceE-EEecC
Confidence 46788889999988875 8888888777777655 5552 2 2221 2221111 123456886 47776
Q ss_pred CCCHHHHHHHHHhcccCCEEEE
Q 019408 80 GSDSSFLRTVFNAVKRDGLLYL 101 (341)
Q Consensus 80 gsp~~fld~al~~v~~gGlL~v 101 (341)
|. +.++.++++++++|.+.+
T Consensus 99 gg--~~~~~~~~~l~~~G~iv~ 118 (167)
T d1tt7a2 99 GG--KQLASLLSKIQYGGSVAV 118 (167)
T ss_dssp CT--HHHHHHHTTEEEEEEEEE
T ss_pred cH--HHHHHHHHHhccCceEEE
Confidence 64 788999999999999986
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.45 E-value=1.6 Score=37.40 Aligned_cols=139 Identities=11% Similarity=0.089 Sum_probs=78.9
Q ss_pred cccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCcccE
Q 019408 3 GCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFDL 73 (341)
Q Consensus 3 gsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fDv 73 (341)
||+..|...+++ .|+ +|+++|.|++.++-+.+-++..+.. ..++..+..|. .+++.+...+-.+.|+
T Consensus 13 as~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 88 (272)
T d1xkqa_ 13 SSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVS---EKQVNSVVADVTTEDGQDQIINSTLKQFGKIDV 88 (272)
T ss_dssp CSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCC---GGGEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred cCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC---CCceEEEEccCCCHHHHHHHHHHHHHHhCCceE
Confidence 555555544443 576 6999999999999888888766542 23456666553 3334443333346798
Q ss_pred EEeCC-------CCCCH------HHH--------------HHHHHhc--ccCCEEEEEecCCCCCCCCCchhHHhhhccc
Q 019408 74 IDIDS-------FGSDS------SFL--------------RTVFNAV--KRDGLLYLTSTDGYSSGGHRPNNSLASYGAY 124 (341)
Q Consensus 74 IdlDP-------ygsp~------~fl--------------d~al~~v--~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~ 124 (341)
++-.- +.... .|- ..++..+ +.||++.++++- .+..+....--|++.
T Consensus 89 lvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~----a~~~~~~~~~~Y~as 164 (272)
T d1xkqa_ 89 LVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIV----AGPQAQPDFLYYAIA 164 (272)
T ss_dssp EEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGG----GSSSCCCSSHHHHHH
T ss_pred EEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchh----ccccCCCCcchhhhH
Confidence 87542 32211 121 1333333 356777765531 122233333445443
Q ss_pred cCCCCCchhhhHHHHHHHHHHHHHhcCCcEEEE
Q 019408 125 ILPMPYSNEIGLRMLIGGAVREASAQGYHVSPL 157 (341)
Q Consensus 125 ~~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl 157 (341)
- -++.-|...++++-+.+|+.+--+
T Consensus 165 K--------aal~~ltk~lA~el~~~gIrVN~I 189 (272)
T d1xkqa_ 165 K--------AALDQYTRSTAIDLAKFGIRVNSV 189 (272)
T ss_dssp H--------HHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred H--------HHHHHHHHHHHHHhcccCeEEEEE
Confidence 2 678888888888888877655444
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.22 E-value=1.6 Score=37.20 Aligned_cols=139 Identities=14% Similarity=0.066 Sum_probs=73.0
Q ss_pred cccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhc-CCccc
Q 019408 3 GCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLK-REFFD 72 (341)
Q Consensus 3 gsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~-~~~fD 72 (341)
||+..|...|+. .|+ +|+++|.|++.++-+.+.++..+. ++..+..|+ .+++.+...+ +.+.|
T Consensus 16 as~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~------~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~id 88 (259)
T d1xq1a_ 16 GTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGF------QVTGSVCDASLRPEREKLMQTVSSMFGGKLD 88 (259)
T ss_dssp TTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC------CEEEEECCTTSHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC------ceEEEeccCCCHHHHHHHHHHHHHHhCCCcc
Confidence 455555554432 587 699999999988888887776543 344555443 3334333222 23578
Q ss_pred EEEeCC-CCCCHHHH----------------------HHHHHhcc--cCCE-EEEEecCCCCCCCCCchhHHhhhccccC
Q 019408 73 LIDIDS-FGSDSSFL----------------------RTVFNAVK--RDGL-LYLTSTDGYSSGGHRPNNSLASYGAYIL 126 (341)
Q Consensus 73 vIdlDP-ygsp~~fl----------------------d~al~~v~--~gGl-L~vt~TD~~~l~g~~~~~~~r~Yg~~~~ 126 (341)
+++--. ...+.++. ..++..++ .+|- +.+++. .+..+....--|+++-
T Consensus 89 ilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~-----~~~~~~~~~~~Y~asK- 162 (259)
T d1xq1a_ 89 ILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSI-----AGVVSASVGSIYSATK- 162 (259)
T ss_dssp EEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC---------------CCHHHHHH-
T ss_pred cccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccc-----cccccccccccccccc-
Confidence 876554 22122221 13334442 3344 444333 2333333333455433
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEecc
Q 019408 127 PMPYSNEIGLRMLIGGAVREASAQGYHVSPLFSYY 161 (341)
Q Consensus 127 ~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s~~ 161 (341)
.++.-|...++++-+.+|+.+--+.--.
T Consensus 163 -------aal~~lt~~lA~e~~~~gIrVN~V~PG~ 190 (259)
T d1xq1a_ 163 -------GALNQLARNLACEWASDGIRANAVAPAV 190 (259)
T ss_dssp -------HHHHHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred -------cchhhhhHHHHHHhcccCeEEEEeccCc
Confidence 6888899999999888887766554433
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.84 E-value=4.2 Score=34.17 Aligned_cols=131 Identities=11% Similarity=0.006 Sum_probs=78.3
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fD 72 (341)
.||+..|-..|++ .|+ +|+++|.+++.++.+.++++..+- ++..+..|. ..++.....+-..-|
T Consensus 14 Gas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~------~~~~~~~Dvs~~~~v~~~~~~i~~~~g~id 86 (244)
T d1yb1a_ 14 GAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGA------KVHTFVVDCSNREDIYSSAKKVKAEIGDVS 86 (244)
T ss_dssp TTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC------CEEEEECCTTCHHHHHHHHHHHHHHTCCCS
T ss_pred CCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC------cEEEEEeeCCCHHHHHHHHHHHHHHcCCCc
Confidence 3566667666654 576 599999999999999999886542 344444443 333333333334578
Q ss_pred EEEeCC-CCCCHHH-------H---------------HHHHHhccc--CCEEEEEecCCCCCCCCCchhHHhhhccccCC
Q 019408 73 LIDIDS-FGSDSSF-------L---------------RTVFNAVKR--DGLLYLTSTDGYSSGGHRPNNSLASYGAYILP 127 (341)
Q Consensus 73 vIdlDP-ygsp~~f-------l---------------d~al~~v~~--gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~ 127 (341)
+++.-- .+.+.++ . ..++..+++ .|.+..+++- .+..+....--|+++=
T Consensus 87 ilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~----~~~~~~~~~~~Y~asK-- 160 (244)
T d1yb1a_ 87 ILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASA----AGHVSVPFLLAYCSSK-- 160 (244)
T ss_dssp EEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCC----C-CCCHHHHHHHHHHH--
T ss_pred eeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecc----hhcCCCCCcHHHHHHH--
Confidence 876554 1111111 1 144444433 3556655553 3555556666676654
Q ss_pred CCCchhhhHHHHHHHHHHHHHhcC
Q 019408 128 MPYSNEIGLRMLIGGAVREASAQG 151 (341)
Q Consensus 128 ~~~~~E~~lR~ll~~i~~~Aa~~~ 151 (341)
.++.-|...++...+.++
T Consensus 161 ------aal~~~~~~La~El~~~~ 178 (244)
T d1yb1a_ 161 ------FAAVGFHKTLTDELAALQ 178 (244)
T ss_dssp ------HHHHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHHHHHhhc
Confidence 788889999988888763
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=87.20 E-value=3.2 Score=35.00 Aligned_cols=134 Identities=14% Similarity=0.089 Sum_probs=74.5
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.||+..|...|.+ .|++-++..+.+++..+.+.+.++.++. ++..++.|+. +++.....+....|
T Consensus 13 Gas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~------~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 86 (259)
T d1ja9a_ 13 GAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA------QGVAIQADISKPSEVVALFDKAVSHFGGLD 86 (259)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC------CEEEEECCTTSHHHHHHHHHHHHHHHSCEE
T ss_pred CCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC------CceEecCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 4677777766654 5776444457888889999998887764 3455555543 33444333334578
Q ss_pred EEEeCC-CCCCHHH----------------------HHHHHHhcccCCEEEEEecCCCCCCCCCchhHHhhhccccCCCC
Q 019408 73 LIDIDS-FGSDSSF----------------------LRTVFNAVKRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMP 129 (341)
Q Consensus 73 vIdlDP-ygsp~~f----------------------ld~al~~v~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~ 129 (341)
+++--. ...+.++ +..++..++++|-+.+..+..+...+. ..+--|+++-
T Consensus 87 ilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~~~---~~~~~Y~asK---- 159 (259)
T d1ja9a_ 87 FVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGI---PNHALYAGSK---- 159 (259)
T ss_dssp EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSC---CSCHHHHHHH----
T ss_pred EEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccccCC---CCchhHHHHH----
Confidence 887665 2111111 124555566666555545534333221 1122233322
Q ss_pred CchhhhHHHHHHHHHHHHHhcCC
Q 019408 130 YSNEIGLRMLIGGAVREASAQGY 152 (341)
Q Consensus 130 ~~~E~~lR~ll~~i~~~Aa~~~~ 152 (341)
-++.-|...+++.-+.+|.
T Consensus 160 ----~al~~l~r~lA~e~~~~gI 178 (259)
T d1ja9a_ 160 ----AAVEGFCRAFAVDCGAKGV 178 (259)
T ss_dssp ----HHHHHHHHHHHHHHGGGTC
T ss_pred ----HHHHHHHHHHHHHHhhcCe
Confidence 5777777777777776653
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=87.04 E-value=0.38 Score=38.37 Aligned_cols=87 Identities=16% Similarity=0.158 Sum_probs=52.1
Q ss_pred cccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEec-c-HHHHHHHhhhcCCcccEEEeCCCC
Q 019408 3 GCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF-D-ANRVLSECYLKREFFDLIDIDSFG 80 (341)
Q Consensus 3 gsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~-D-A~~~l~~~~~~~~~fDvIdlDPyg 80 (341)
|.|...+-.++..|+..|+++|.+++-.+.+++ .|.+ +-+..... | ..+..... .+..+|+| +|.=|
T Consensus 39 g~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~----~GAd----~~in~~~~~~~~~~~~~~~--~~~G~d~v-id~~G 107 (175)
T d1cdoa2 39 AVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT----DFVNPNDHSEPISQVLSKM--TNGGVDFS-LECVG 107 (175)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC----EEECGGGCSSCHHHHHHHH--HTSCBSEE-EECSC
T ss_pred CccchHHHHHHHHhhchheeecchHHHHHHHHH----cCCc----EEEcCCCcchhHHHHHHhh--ccCCccee-eeecC
Confidence 446666666666899999999999998887765 6652 11111111 1 23333322 24468887 45545
Q ss_pred CCHHHHHHHHHhcccC-CEEEE
Q 019408 81 SDSSFLRTVFNAVKRD-GLLYL 101 (341)
Q Consensus 81 sp~~fld~al~~v~~g-GlL~v 101 (341)
.+ ..+..++++++++ |.+.+
T Consensus 108 ~~-~~~~~a~~~~~~g~~~~~~ 128 (175)
T d1cdoa2 108 NV-GVMRNALESCLKGWGVSVL 128 (175)
T ss_dssp CH-HHHHHHHHTBCTTTCEEEE
T ss_pred CH-HHHHHHHHHhhCCCcceeE
Confidence 33 5567788887776 44443
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=86.44 E-value=2.8 Score=31.12 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=49.8
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC--CC-CHHHHHHHHHhcc
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF--GS-DSSFLRTVFNAVK 94 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy--gs-p~~fld~al~~v~ 94 (341)
++|..+|-++...+.+++-++..|. ++ ....|..+.+..... ..||+|++|=. +. -..++. .++...
T Consensus 2 krILvVDD~~~~~~~l~~~L~~~g~------~v-~~a~~g~eal~~~~~--~~~dlillD~~mP~~~G~el~~-~lr~~~ 71 (119)
T d1peya_ 2 EKILIVDDQSGIRILLNEVFNKEGY------QT-FQAANGLQALDIVTK--ERPDLVLLDMKIPGMDGIEILK-RMKVID 71 (119)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC------EE-EEESSHHHHHHHHHH--HCCSEEEEESCCTTCCHHHHHH-HHHHHC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCC------EE-EEeCCHHHHHHHHHh--CCCCEEEEeccCCCCCHHHHHH-HHHHhC
Confidence 5799999999999999999998876 23 245566666554432 47999999952 22 223333 344444
Q ss_pred cC-CEEEEEec
Q 019408 95 RD-GLLYLTST 104 (341)
Q Consensus 95 ~g-GlL~vt~T 104 (341)
++ -++.+|+.
T Consensus 72 ~~~pvi~lt~~ 82 (119)
T d1peya_ 72 ENIRVIIMTAY 82 (119)
T ss_dssp TTCEEEEEESS
T ss_pred CCCcEEEEecC
Confidence 33 45556554
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=86.26 E-value=0.33 Score=42.56 Aligned_cols=62 Identities=18% Similarity=0.120 Sum_probs=42.3
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
|||.|.+++=+- +.|.+-|+++|+++.|+++.+.|... . .++|..++-.+ .-..+|+|.--|
T Consensus 18 FsG~Gg~~~gl~-~aG~~~v~a~e~d~~a~~~~~~N~~~--~----------~~~Di~~~~~~---~~~~~Dll~ggp 79 (327)
T d2c7pa1 18 FAGLGGFRLALE-SCGAECVYSNEWDKYAQEVYEMNFGE--K----------PEGDITQVNEK---TIPDHDILCAGF 79 (327)
T ss_dssp TCTTTHHHHHHH-HTTCEEEEEECCCHHHHHHHHHHHSC--C----------CBSCGGGSCGG---GSCCCSEEEEEC
T ss_pred CccccHHHHHHH-HCCCeEEEEEeCCHHHHHHHHHHCCC--C----------CcCchhcCchh---hcceeeeeeccc
Confidence 789997655332 27888899999999999999999741 1 13454443211 113578888777
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=86.13 E-value=2.8 Score=35.66 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=75.9
Q ss_pred cccHhHHHHhhh---CCCCEEEEeeCC-HHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 3 GCGIRSLRYLAE---AKADFVMANDGN-DAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 3 gsG~rgir~a~e---~ga~~V~~~Dis-~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
||+..|...+++ .|+ +|+++|.+ ++..+.+.+.++..+. ++..++.|+. +++.+...+-.+.|
T Consensus 15 as~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~------~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iD 87 (261)
T d1geea_ 15 SSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGG------EAIAVKGDVTVESDVINLVQSAIKEFGKLD 87 (261)
T ss_dssp CSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC------EEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred CCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCC------cEEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 555566655443 576 58889987 5567777777776543 4455555543 33443333334679
Q ss_pred EEEeCC-CCCCHHHH----------------------HHHHHhc---ccCCEEEEEecCCCCCCCCCchhHHhhhccccC
Q 019408 73 LIDIDS-FGSDSSFL----------------------RTVFNAV---KRDGLLYLTSTDGYSSGGHRPNNSLASYGAYIL 126 (341)
Q Consensus 73 vIdlDP-ygsp~~fl----------------------d~al~~v---~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~ 126 (341)
+++-.. ...+.++. ..++..+ +.||.+...++- .+..+....--|++.-
T Consensus 88 iLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~----~~~~~~~~~~~Y~asK- 162 (261)
T d1geea_ 88 VMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSV----HEKIPWPLFVHYAASK- 162 (261)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCG----GGTSCCTTCHHHHHHH-
T ss_pred EeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccc----hhcccCccccccccCC-
Confidence 887765 22121221 1444444 234544433331 2333333344455433
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEe
Q 019408 127 PMPYSNEIGLRMLIGGAVREASAQGYHVSPLFS 159 (341)
Q Consensus 127 ~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s 159 (341)
.++.-|...++.+.+.+|+.+--+..
T Consensus 163 -------aal~~lt~~lA~e~~~~gIrVN~I~P 188 (261)
T d1geea_ 163 -------GGMKLMTETLALEYAPKGIRVNNIGP 188 (261)
T ss_dssp -------HHHHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred -------ccchhhHHHHHHHhhhhCcEEEEEee
Confidence 68888889999888888766554443
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=86.01 E-value=0.29 Score=42.44 Aligned_cols=63 Identities=17% Similarity=0.124 Sum_probs=44.9
Q ss_pred CccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
|||.|.+++=+- ++|.+.|+++|+++.|.++.+.|.. . +++++|..++-.. .-.+.|+|.--|
T Consensus 7 F~G~Gg~~~gl~-~aG~~~~~a~e~d~~a~~~~~~N~~---------~--~~~~~Di~~~~~~---~~~~~dll~~g~ 69 (324)
T d1dcta_ 7 FSGAGGLDLGFQ-KAGFRIICANEYDKSIWKTYESNHS---------A--KLIKGDISKISSD---EFPKCDGIIGGP 69 (324)
T ss_dssp SCSSCHHHHHHH-HHTCEEEEEEECCHHHHHHHHHHCC---------S--EEEESCTTTSCGG---GSCCCSEEEECC
T ss_pred CcCcCHHHHHHH-HCCCEEEEEEeCCHHHHHHHHHHCC---------C--CCccCChhhCCHh---HcccccEEeecc
Confidence 799998764332 2688889999999999999999853 1 3456776654221 123579998887
|
| >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Hypothetical protein BH3024 species: Bacillus halodurans [TaxId: 86665]
Probab=85.99 E-value=2 Score=32.07 Aligned_cols=80 Identities=18% Similarity=0.122 Sum_probs=50.0
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---CCCCHHHHHHHHHhc-
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS---FGSDSSFLRTVFNAV- 93 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP---ygsp~~fld~al~~v- 93 (341)
-+|..+|-++...+.+++.++..|. ++. ...|..+.+..+. +...||+|++|= -.+-..++. .++..
T Consensus 3 ~rILvVdDd~~~~~~l~~~L~~~g~------~v~-~~~~~~~al~~l~-~~~~~dliilD~~lp~~~G~el~~-~ir~~~ 73 (118)
T d2b4aa1 3 FRVTLVEDEPSHATLIQYHLNQLGA------EVT-VHPSGSAFFQHRS-QLSTCDLLIVSDQLVDLSIFSLLD-IVKEQT 73 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC------EEE-EESSHHHHHHTGG-GGGSCSEEEEETTCTTSCHHHHHH-HHTTSS
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCC------CeE-EECCHHHHHHHHH-hcCCCCEEEEeCCCCCCCHHHHHH-HHHhcC
Confidence 3689999999999999999998776 333 3456666665442 234699999995 222223332 23322
Q ss_pred ccCCEEEEEecCC
Q 019408 94 KRDGLLYLTSTDG 106 (341)
Q Consensus 94 ~~gGlL~vt~TD~ 106 (341)
.+-.++.+|+.+.
T Consensus 74 ~~~pii~lt~~~~ 86 (118)
T d2b4aa1 74 KQPSVLILTTGRH 86 (118)
T ss_dssp SCCEEEEEESCC-
T ss_pred CCCcEEEEECCcc
Confidence 2235666776544
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=85.89 E-value=3.2 Score=35.38 Aligned_cols=139 Identities=9% Similarity=0.060 Sum_probs=78.3
Q ss_pred cccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCcccE
Q 019408 3 GCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFDL 73 (341)
Q Consensus 3 gsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fDv 73 (341)
||+..|...|++ .|+ +|+++|.|++.++-+.+.++..+.. ..++..+..|. .+++.+...+-.+.|+
T Consensus 12 as~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDi 87 (274)
T d1xhla_ 12 SSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVP---AEKINAVVADVTEASGQDDIINTTLAKFGKIDI 87 (274)
T ss_dssp CSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCC---GGGEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred CCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCC---CcceEEEEeeCCCHHHHHHHHHHHHHHcCCceE
Confidence 455555544443 576 5999999999999999988877652 23566666653 2333333332235798
Q ss_pred EEeCC----CCC------CHHHHH---------------HHHHhc--ccCCEEEEEecCCCCCCCCCchhHHhhhccccC
Q 019408 74 IDIDS----FGS------DSSFLR---------------TVFNAV--KRDGLLYLTSTDGYSSGGHRPNNSLASYGAYIL 126 (341)
Q Consensus 74 IdlDP----ygs------p~~fld---------------~al~~v--~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~ 126 (341)
++.-. .+. +.+-.+ .++..+ +.+|.+.++++-. +..+...+--|++.-
T Consensus 88 lVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~----~~~~~~~~~~Y~asK- 162 (274)
T d1xhla_ 88 LVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVA----GPQAHSGYPYYACAK- 162 (274)
T ss_dssp EEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGG----SSSCCTTSHHHHHHH-
T ss_pred EEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhh----ccccCCCCceehhhh-
Confidence 87543 111 111111 333333 3456666654322 222333334455432
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhcCCcEEEE
Q 019408 127 PMPYSNEIGLRMLIGGAVREASAQGYHVSPL 157 (341)
Q Consensus 127 ~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl 157 (341)
-|+.-|...++..-+.+|+.+--+
T Consensus 163 -------aal~~ltk~lA~ela~~gIrVN~I 186 (274)
T d1xhla_ 163 -------AALDQYTRCTAIDLIQHGVRVNSV 186 (274)
T ss_dssp -------HHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred -------hHHHHHHHHHHHHHhHhCCceeee
Confidence 678888888888888776554433
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.88 E-value=0.19 Score=44.17 Aligned_cols=66 Identities=21% Similarity=0.114 Sum_probs=42.0
Q ss_pred CccccHhHHHHhhhCCC--CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 1 MCGCGIRSLRYLAEAKA--DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 1 fagsG~rgir~a~e~ga--~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
|||.|.+++=+- ..|. +-|+++|+++.|+++.+.|... ..++++|..++-..... ....|++.--|
T Consensus 9 F~G~Gg~~~gl~-~aG~~~~~~~a~E~~~~a~~~~~~n~~~----------~~~~~~di~~~~~~~~~-~~~~Dll~ggp 76 (343)
T d1g55a_ 9 YSGVGGMHHALR-ESCIPAQVVAAIDVNTVANEVYKYNFPH----------TQLLAKTIEGITLEEFD-RLSFDMILMSP 76 (343)
T ss_dssp TCTTCHHHHHHH-HHTCSEEEEEEECCCHHHHHHHHHHCTT----------SCEECSCGGGCCHHHHH-HHCCSEEEECC
T ss_pred CcCccHHHHHHH-HcCCCCeEEEEEECCHHHHHHHHHHCCC----------CCcccCchhhCCHhHcC-CCCccEEEeec
Confidence 899998654322 2576 4488999999999999998631 12345554433221111 12589999888
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.82 E-value=2.6 Score=35.73 Aligned_cols=71 Identities=10% Similarity=-0.051 Sum_probs=45.9
Q ss_pred cccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCcccE
Q 019408 3 GCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFDL 73 (341)
Q Consensus 3 gsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fDv 73 (341)
||+..|...|++ .|+ +|+..|.+++.++-+.+-++..+.. .++..++.|. .+++.....+-...|+
T Consensus 18 as~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~----~~~~~~~~Dls~~~~v~~~v~~~~~~~g~iD~ 92 (257)
T d1xg5a_ 18 ASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYP----GTLIPYRCDLSNEEDILSMFSAIRSQHSGVDI 92 (257)
T ss_dssp TTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCS----SEEEEEECCTTCHHHHHHHHHHHHHHHCCCSE
T ss_pred CCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC----ceEEEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence 556666666554 577 6999999999999888877765542 3555555543 3344444333346798
Q ss_pred EEeCC
Q 019408 74 IDIDS 78 (341)
Q Consensus 74 IdlDP 78 (341)
++--.
T Consensus 93 lVnnA 97 (257)
T d1xg5a_ 93 CINNA 97 (257)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 87665
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.65 E-value=3.5 Score=30.57 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=49.8
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeC---CCCCCHHHHHHHHHhccc
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDID---SFGSDSSFLRTVFNAVKR 95 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlD---Pygsp~~fld~al~~v~~ 95 (341)
+|..+|-++...+.+++=++..|. .+. ...|+.+.+..+.. ..||+|++| |-.....++.. ++.-.+
T Consensus 3 rILiVdDd~~~~~~l~~~L~~~g~------~v~-~a~~~~~al~~l~~--~~~dlillD~~mp~~~g~~~~~~-lr~~~~ 72 (122)
T d1kgsa2 3 RVLVVEDERDLADLITEALKKEMF------TVD-VCYDGEEGMYMALN--EPFDVVILDIMLPVHDGWEILKS-MRESGV 72 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTC------EEE-EESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHH-HHHTTC
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCC------EEE-EEcchHHHHHHHHh--hCccccccccccccchhHHHHHH-HHhcCC
Confidence 688999999999999999998776 333 45677766665533 589999999 42322344433 333322
Q ss_pred -CCEEEEEec
Q 019408 96 -DGLLYLTST 104 (341)
Q Consensus 96 -gGlL~vt~T 104 (341)
--++.+|+.
T Consensus 73 ~~piI~lt~~ 82 (122)
T d1kgsa2 73 NTPVLMLTAL 82 (122)
T ss_dssp CCCEEEEESS
T ss_pred CCcEEEEcCC
Confidence 245666654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=85.55 E-value=3.1 Score=35.30 Aligned_cols=138 Identities=14% Similarity=0.077 Sum_probs=73.5
Q ss_pred cccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEecc------HHHHHHHhhhcCCcccE
Q 019408 3 GCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFD------ANRVLSECYLKREFFDL 73 (341)
Q Consensus 3 gsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~D------A~~~l~~~~~~~~~fDv 73 (341)
||+..|...++. .|+ +|+++|.+++..+...+.+...+.. .++..+..| +.+++.+...+-.+.|+
T Consensus 12 as~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~----~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDi 86 (258)
T d1iy8a_ 12 GGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPD----AEVLTTVADVSDEAQVEAYVTATTERFGRIDG 86 (258)
T ss_dssp TTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTT----CCEEEEECCTTSHHHHHHHHHHHHHHHSCCSE
T ss_pred CCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCC----CeEEEEeccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 444444443332 576 5999999999888777766554321 345555554 44444444333346798
Q ss_pred EEeC-----CCCC-----CHHHH--------------HHHHHhcc--cCCEEEEEecCCCCCCCCCchhHHhhhccccCC
Q 019408 74 IDID-----SFGS-----DSSFL--------------RTVFNAVK--RDGLLYLTSTDGYSSGGHRPNNSLASYGAYILP 127 (341)
Q Consensus 74 IdlD-----Pygs-----p~~fl--------------d~al~~v~--~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~ 127 (341)
++-- |.+. +..|- ..++..++ .+|-+...++- .+..+....--|+++-
T Consensus 87 LVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~----~~~~~~~~~~~Y~asK-- 160 (258)
T d1iy8a_ 87 FFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASV----GGIRGIGNQSGYAAAK-- 160 (258)
T ss_dssp EEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCG----GGTSBCSSBHHHHHHH--
T ss_pred EEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccH----hhccCCCCchHHHHHH--
Confidence 7632 2221 11111 13333332 44555544442 2333333444555433
Q ss_pred CCCchhhhHHHHHHHHHHHHHhcCCcEEEE
Q 019408 128 MPYSNEIGLRMLIGGAVREASAQGYHVSPL 157 (341)
Q Consensus 128 ~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl 157 (341)
-++.-|...++++-+++|+.+--+
T Consensus 161 ------aal~~lt~~lA~el~~~gIrVN~i 184 (258)
T d1iy8a_ 161 ------HGVVGLTRNSAVEYGRYGIRINAI 184 (258)
T ss_dssp ------HHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred ------HHHHHHHHHHHHHhCccCceEEEE
Confidence 678888888888887776544433
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=85.47 E-value=2.8 Score=31.95 Aligned_cols=76 Identities=9% Similarity=0.067 Sum_probs=48.9
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---CCCCHHHHHHHHHhcc-
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS---FGSDSSFLRTVFNAVK- 94 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP---ygsp~~fld~al~~v~- 94 (341)
+|..+|-++...+.+++-++..|+ .+. ...|....+..+.. ..||+|++|= -++...++.. ++...
T Consensus 2 kILiVDDd~~~~~~l~~~L~~~g~------~v~-~a~~~~eAl~~l~~--~~~dlvilD~~mp~~~G~e~~~~-lr~~~~ 71 (137)
T d1ny5a1 2 NVLVIEDDKVFRGLLEEYLSMKGI------KVE-SAERGKEAYKLLSE--KHFNVVLLDLLLPDVNGLEILKW-IKERSP 71 (137)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTC------EEE-EESSHHHHHHHHHH--SCCSEEEEESBCSSSBHHHHHHH-HHHHCT
T ss_pred EEEEEecCHHHHHHHHHHHHHCCC------EEE-EECCHHHHHHHhhc--cccccchHHHhhhhhhHHHHHHH-HHHhCC
Confidence 588999999999999999998887 333 35566666654432 4799999994 2222233433 33322
Q ss_pred cCCEEEEEec
Q 019408 95 RDGLLYLTST 104 (341)
Q Consensus 95 ~gGlL~vt~T 104 (341)
+=-++.+|+.
T Consensus 72 ~~piI~lT~~ 81 (137)
T d1ny5a1 72 ETEVIVITGH 81 (137)
T ss_dssp TSEEEEEEET
T ss_pred CCCEEEEECC
Confidence 2346666664
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.46 E-value=1.3 Score=37.50 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=71.7
Q ss_pred cccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCcccE
Q 019408 3 GCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFDL 73 (341)
Q Consensus 3 gsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fDv 73 (341)
||+..|...|++ .|+ +|+++|.+++..+.+.+.+. +++..++.|. .+++.+...+-...|+
T Consensus 14 as~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idi 83 (244)
T d1nffa_ 14 GARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA---------DAARYVHLDVTQPAQWKAAVDTAVTAFGGLHV 83 (244)
T ss_dssp TTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG---------GGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh---------CcceEEEeecCCHHHHHHHHHHHHHHhCCCeE
Confidence 455556544432 577 59999999988877776553 2334444443 3344444333335788
Q ss_pred EEeCC-CCCCHHHH----------------------HHHHHhcc--cCCEEEEEecCCCCCCCCCchhHHhhhccccCCC
Q 019408 74 IDIDS-FGSDSSFL----------------------RTVFNAVK--RDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPM 128 (341)
Q Consensus 74 IdlDP-ygsp~~fl----------------------d~al~~v~--~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~ 128 (341)
++--. ...+.++. ..++..++ .+|-+...++-. +..+...+--|++.-
T Consensus 84 linnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~----~~~~~~~~~~Y~asK--- 156 (244)
T d1nffa_ 84 LVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIE----GLAGTVACHGYTATK--- 156 (244)
T ss_dssp EEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG----GTSCCTTBHHHHHHH---
T ss_pred EEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccc----cccccccccchhhHH---
Confidence 87654 22111111 13333332 234444333322 222333334455433
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCCcEEEEE
Q 019408 129 PYSNEIGLRMLIGGAVREASAQGYHVSPLF 158 (341)
Q Consensus 129 ~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~ 158 (341)
.|+.-|...++++-+++|+.+--+.
T Consensus 157 -----aal~~ltk~lA~el~~~gIrVN~I~ 181 (244)
T d1nffa_ 157 -----FAVRGLTKSTALELGPSGIRVNSIH 181 (244)
T ss_dssp -----HHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred -----HHHHHHHHHHHHHhcccCEEEEEEe
Confidence 6888888888888888876554443
|
| >d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator DrrB species: Thermotoga maritima [TaxId: 2336]
Probab=85.22 E-value=0.81 Score=34.41 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=37.1
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
+|..+|-++...+.+++.++..| .+ ....++.+.|.. .+.||+|++|-
T Consensus 4 kILiVDDd~~~~~~l~~~L~~~g-------~v-~~~~~~~~al~~----~~~~dlillD~ 51 (120)
T d1p2fa2 4 KIAVVDDDKNILKKVSEKLQQLG-------RV-KTFLTGEDFLND----EEAFHVVVLDV 51 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE-------EE-EEESSHHHHHHC----CSCCSEEEEES
T ss_pred EEEEEECCHHHHHHHHHHHHhCC-------EE-EEECCHHHHHhc----CCCCCEEEEeC
Confidence 68999999999999999887543 22 345677777752 35799999996
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=85.17 E-value=2.6 Score=35.66 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=70.6
Q ss_pred cccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEec------cHHHHHHHhhhcCCcccE
Q 019408 3 GCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHF------DANRVLSECYLKREFFDL 73 (341)
Q Consensus 3 gsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~------DA~~~l~~~~~~~~~fDv 73 (341)
||+..|...+++ .|+ +|++.|.|++..+-+.+.+.. +..+++. |..+++.....+-...|+
T Consensus 14 as~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~---------~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDi 83 (253)
T d1hxha_ 14 GASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGE---------RSMFVRHDVSSEADWTLVMAAVQRRLGTLNV 83 (253)
T ss_dssp TTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCT---------TEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred CCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCC---------CeEEEEeecCCHHHHHHHHHHHHHHhCCCCe
Confidence 455555554443 576 599999999988877665421 2233333 334444444333346798
Q ss_pred EEeCC-CCCCHHH-------H---------------HHHHHhcc-cCCEEEEEecCCCCCCCCCchhHHhhhccccCCCC
Q 019408 74 IDIDS-FGSDSSF-------L---------------RTVFNAVK-RDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPMP 129 (341)
Q Consensus 74 IdlDP-ygsp~~f-------l---------------d~al~~v~-~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~~ 129 (341)
++--. ...+.++ . ..++..++ .+|-+..+++-. +..+....--|+++-
T Consensus 84 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~----~~~~~~~~~~Y~asK---- 155 (253)
T d1hxha_ 84 LVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVS----SWLPIEQYAGYSASK---- 155 (253)
T ss_dssp EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGG----GTSCCTTBHHHHHHH----
T ss_pred EEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchh----hhcCccccccccchh----
Confidence 87665 1111111 1 24445554 466666545422 223333334455433
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCcE
Q 019408 130 YSNEIGLRMLIGGAVREASAQGYHV 154 (341)
Q Consensus 130 ~~~E~~lR~ll~~i~~~Aa~~~~~i 154 (341)
.++.-|...++++.+..+..|
T Consensus 156 ----aal~~lt~~lA~e~~~~g~~I 176 (253)
T d1hxha_ 156 ----AAVSALTRAAALSCRKQGYAI 176 (253)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCCE
T ss_pred ----HHHHHHHHHHHHHHhhcCCCE
Confidence 678888888888877765444
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=85.13 E-value=0.23 Score=42.63 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=53.8
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|+|.+.-..+. .+ .+|+++|+|+..++.++++.... .+++++++|+.++- . .....+-+|=-=||.-
T Consensus 30 pG~G~LT~~Ll~-~~-~~v~avE~D~~l~~~l~~~~~~~-------~n~~i~~~D~l~~~--~-~~~~~~~vv~NLPYnI 97 (235)
T d1qama_ 30 SGKGHFTLELVQ-RC-NFVTAIEIDHKLCKTTENKLVDH-------DNFQVLNKDILQFK--F-PKNQSYKIFGNIPYNI 97 (235)
T ss_dssp CTTSHHHHHHHH-HS-SEEEEECSCHHHHHHHHHHTTTC-------CSEEEECCCGGGCC--C-CSSCCCEEEEECCGGG
T ss_pred CCchHHHHHHHh-Cc-CceEEEeeccchHHHHHHHhhcc-------cchhhhhhhhhhcc--c-cccccceeeeeehhhh
Confidence 599999988886 44 68999999999999999876422 36889999997641 1 1122233443347876
Q ss_pred CHHHHHHHH
Q 019408 82 DSSFLRTVF 90 (341)
Q Consensus 82 p~~fld~al 90 (341)
.++.+...+
T Consensus 98 ss~il~~ll 106 (235)
T d1qama_ 98 STDIIRKIV 106 (235)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 667776654
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=84.48 E-value=0.87 Score=38.78 Aligned_cols=137 Identities=12% Similarity=0.103 Sum_probs=76.4
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fD 72 (341)
.||+..|...+++ .|+ +|+++|.|++.++-+.+.++..+. ++..+..|+ .+++.+...+-.+.|
T Consensus 17 Gas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~------~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iD 89 (251)
T d2c07a1 17 GAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGY------ESSGYAGDVSKKEEISEVINKILTEHKNVD 89 (251)
T ss_dssp STTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTC------CEEEEECCTTCHHHHHHHHHHHHHHCSCCC
T ss_pred CCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC------cEEEEEccCCCHHHHHHHHHHHHHhcCCce
Confidence 3566676666554 465 699999999999988888876543 345555544 334444434445789
Q ss_pred EEEeCC-CCCC--------HHHH--------------HHHHHhc--ccCCEEEEEecCCCCCCCCCchhHHhhhccccCC
Q 019408 73 LIDIDS-FGSD--------SSFL--------------RTVFNAV--KRDGLLYLTSTDGYSSGGHRPNNSLASYGAYILP 127 (341)
Q Consensus 73 vIdlDP-ygsp--------~~fl--------------d~al~~v--~~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~ 127 (341)
+++-.. .... ..|- ..++..+ +++|-+...++-. |..+....--|+++-
T Consensus 90 ilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~----~~~~~~~~~~Y~asK-- 163 (251)
T d2c07a1 90 ILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIV----GLTGNVGQANYSSSK-- 163 (251)
T ss_dssp EEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTH----HHHCCTTCHHHHHHH--
T ss_pred eeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHH----hcCCCCCCHHHHHHH--
Confidence 887654 1111 1111 1333333 2345555444422 222222233455432
Q ss_pred CCCchhhhHHHHHHHHHHHHHhcCCcEEEE
Q 019408 128 MPYSNEIGLRMLIGGAVREASAQGYHVSPL 157 (341)
Q Consensus 128 ~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl 157 (341)
-|+.-|...+++.-+++|+.+--+
T Consensus 164 ------aal~~ltr~lA~el~~~gIrVN~V 187 (251)
T d2c07a1 164 ------AGVIGFTKSLAKELASRNITVNAI 187 (251)
T ss_dssp ------HHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred ------HHHHHHHHHHHHHhhhhCeEEEEE
Confidence 678888888888887776554433
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=84.11 E-value=5.6 Score=29.28 Aligned_cols=77 Identities=16% Similarity=0.013 Sum_probs=48.1
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC---CCCHHHHHHHHHhccc
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF---GSDSSFLRTVFNAVKR 95 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy---gsp~~fld~al~~v~~ 95 (341)
+|..+|-++...+.+++=++..|. .+. ...+..+.+..... ..||+|++|=. .+-..++...-+.-..
T Consensus 2 rILvVDDd~~~~~~l~~~L~~~G~------~v~-~a~~g~eal~~l~~--~~~dliilD~~mP~~~G~e~~~~i~~~~~~ 72 (119)
T d2pl1a1 2 RVLVVEDNALLRHHLKVQIQDAGH------QVD-DAEDAKEADYYLNE--HIPDIAIVDLGLPDEDGLSLIRRWRSNDVS 72 (119)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC------EEE-EESSHHHHHHHHHH--SCCSEEEECSCCSSSCHHHHHHHHHHTTCC
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCC------EEE-EECCHHHHHHHHHh--cccceeehhccCCCchhHHHHHHHHhcCcc
Confidence 588999999999999999998776 332 45555555554432 47999999962 2222444432222122
Q ss_pred CCEEEEEec
Q 019408 96 DGLLYLTST 104 (341)
Q Consensus 96 gGlL~vt~T 104 (341)
=-++.+|+.
T Consensus 73 ~pvi~lt~~ 81 (119)
T d2pl1a1 73 LPILVLTAR 81 (119)
T ss_dssp SCEEEEESC
T ss_pred cceEeeecc
Confidence 236666664
|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: TorCAD operon transcriptional regulator TorD, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.83 E-value=2.4 Score=31.38 Aligned_cols=77 Identities=8% Similarity=0.038 Sum_probs=51.5
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC--C-CCHHHHHHHHHhcc
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF--G-SDSSFLRTVFNAVK 94 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy--g-sp~~fld~al~~v~ 94 (341)
.+|..+|-++...+.+++=++..|. .+. ...|+.+.+..... ..||+|++|-- + ....++ ..++...
T Consensus 2 ~rILiVDDd~~~~~~l~~~L~~~g~------~v~-~a~~~~~a~~~~~~--~~~dliilD~~mp~~~g~~~~-~~~~~~~ 71 (120)
T d1zgza1 2 HHIVIVEDEPVTQARLQSYFTQEGY------TVS-VTASGAGLREIMQN--QSVDLILLDINLPDENGLMLT-RALRERS 71 (120)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTC------EEE-EESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHH-HHHHTTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCC------EEE-EECCHHHHHHHHHh--cCCCEEeeehhhccchhHHHH-HHHhccC
Confidence 3689999999999999999998876 333 45566666655432 47999999962 2 112223 3345555
Q ss_pred cCCEEEEEec
Q 019408 95 RDGLLYLTST 104 (341)
Q Consensus 95 ~gGlL~vt~T 104 (341)
.-.++.+|+.
T Consensus 72 ~~piI~lt~~ 81 (120)
T d1zgza1 72 TVGIILVTGR 81 (120)
T ss_dssp CCEEEEEESS
T ss_pred CCeEEEEEcc
Confidence 5557777765
|
| >d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]
Probab=83.81 E-value=1.9 Score=33.14 Aligned_cols=56 Identities=21% Similarity=0.116 Sum_probs=38.8
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhh-----cCCcccEEEeCC
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYL-----KREFFDLIDIDS 78 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~-----~~~~fDvIdlDP 78 (341)
++|..+|=|+...+++++-++..+.. .++. ...|..+.+..+.. ...+||+|++|-
T Consensus 3 krILiVDD~~~~~~~l~~~L~~~g~~----~~v~-~a~~g~eAl~~l~~~~~~~~~~~pdlillD~ 63 (140)
T d1k68a_ 3 KKIFLVEDNKADIRLIQEALANSTVP----HEVV-TVRDGMEAMAYLRQEGEYANASRPDLILLDL 63 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSC----CEEE-EECSHHHHHHHHTTCGGGGSCCCCSEEEECS
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCCC----eEEE-EECCHHHHHHHHHHhHHhhccCCCCEEEEee
Confidence 68999999999999999999977652 2322 33444444433321 345699999997
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=83.43 E-value=1.7 Score=35.26 Aligned_cols=88 Identities=14% Similarity=0.070 Sum_probs=54.6
Q ss_pred cHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC--CCCC
Q 019408 5 GIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS--FGSD 82 (341)
Q Consensus 5 G~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP--ygsp 82 (341)
|.-+++.|+..|| .|++.|.+++..+.++.-... .++....+...+-... ...|+|+-== .|.+
T Consensus 44 G~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~---------~~~~~~~~~~~l~~~~----~~aDivI~aalipG~~ 109 (168)
T d1pjca1 44 GTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS---------RVELLYSNSAEIETAV----AEADLLIGAVLVPGRR 109 (168)
T ss_dssp HHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG---------GSEEEECCHHHHHHHH----HTCSEEEECCCCTTSS
T ss_pred HHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcc---------cceeehhhhhhHHHhh----ccCcEEEEeeecCCcc
Confidence 4445566665575 599999999999887764432 2233333333332222 2579997553 4555
Q ss_pred HHHH--HHHHHhcccCCEEEEEecCC
Q 019408 83 SSFL--RTVFNAVKRDGLLYLTSTDG 106 (341)
Q Consensus 83 ~~fl--d~al~~v~~gGlL~vt~TD~ 106 (341)
+|.| ..-++.+|+|.++.=.+.|.
T Consensus 110 aP~lIt~~mv~~Mk~GSVIVDvaidq 135 (168)
T d1pjca1 110 APILVPASLVEQMRTGSVIVDVAVDQ 135 (168)
T ss_dssp CCCCBCHHHHTTSCTTCEEEETTCTT
T ss_pred cCeeecHHHHhhcCCCcEEEEeecCC
Confidence 5554 46788999999998445555
|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein DctD, receiver domain species: Sinorhizobium meliloti [TaxId: 382]
Probab=83.32 E-value=4.4 Score=30.86 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=50.6
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC---CCCHHHHHHHHHhccc
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF---GSDSSFLRTVFNAVKR 95 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy---gsp~~fld~al~~v~~ 95 (341)
+|..+|=++...+.+++-++..|. .+. ...|+...+.... ...||+|++|=. .+-..++...-+.-.+
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~------~v~-~~~~~~~al~~l~--~~~~dlil~D~~mP~~~G~el~~~lr~~~~~ 72 (140)
T d1qkka_ 2 SVFLIDDDRDLRKAMQQTLELAGF------TVS-SFASATEALAGLS--ADFAGIVISDIRMPGMDGLALFRKILALDPD 72 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC------EEE-EESCHHHHHHTCC--TTCCSEEEEESCCSSSCHHHHHHHHHHHCTT
T ss_pred EEEEEECCHHHHHHHHHHHHHCCC------EEE-EeCChHHHHHHHh--ccCcchHHHhhccCCCCHHHHHHHHHHhCCC
Confidence 588999999999999999998876 333 4567777777653 357999999942 1122444432222222
Q ss_pred CCEEEEEec
Q 019408 96 DGLLYLTST 104 (341)
Q Consensus 96 gGlL~vt~T 104 (341)
=-++.+|+.
T Consensus 73 ~pvI~lT~~ 81 (140)
T d1qkka_ 73 LPMILVTGH 81 (140)
T ss_dssp SCEEEEECG
T ss_pred CcEEEEECC
Confidence 346666654
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=83.18 E-value=1.8 Score=32.27 Aligned_cols=53 Identities=9% Similarity=0.016 Sum_probs=39.4
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS 78 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP 78 (341)
++|..+|-++...+.+++-++..|+ ++.....|..+.+..... ..||+|++|-
T Consensus 2 krILivDD~~~~~~~l~~~L~~~g~------~v~~~a~~~~~al~~~~~--~~~dliilD~ 54 (118)
T d1u0sy_ 2 KRVLIVDDAAFMRMMLKDIITKAGY------EVAGEATNGREAVEKYKE--LKPDIVTMDI 54 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC------EEEEEESSHHHHHHHHHH--HCCSEEEEEC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCC------ceEEEECCHHHHHHHHHh--ccCCEEEEec
Confidence 5799999999999999999998776 232234566666655432 4799999996
|
| >d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulatory protein StyR, N-terminal domain species: Pseudomonas fluorescens [TaxId: 294]
Probab=82.80 E-value=7.4 Score=28.83 Aligned_cols=78 Identities=15% Similarity=0.032 Sum_probs=52.2
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCC---CCCCHHHHHHHHHhccc
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDS---FGSDSSFLRTVFNAVKR 95 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDP---ygsp~~fld~al~~v~~ 95 (341)
+|..+|-|+...+.+++-++..|. ++ ....|+...+.... ...||+|++|= =.+...++...-+.-..
T Consensus 4 ~ILiVDDd~~~~~~l~~~L~~~g~------~v-~~a~~~~~al~~~~--~~~~dliilD~~mp~~~G~~~~~~i~~~~~~ 74 (128)
T d1yioa2 4 TVFVVDDDMSVREGLRNLLRSAGF------EV-ETFDCASTFLEHRR--PEQHGCLVLDMRMPGMSGIELQEQLTAISDG 74 (128)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTC------EE-EEESSHHHHHHHCC--TTSCEEEEEESCCSSSCHHHHHHHHHHTTCC
T ss_pred EEEEEECCHHHHHHHHHHHHHcCC------Cc-cccccHHHHHHHHH--hcCCCEeehhhhcccchhHHHHHHHHhhCCC
Confidence 799999999999999999997776 33 34567777777653 45799999995 22223444432222223
Q ss_pred CCEEEEEecC
Q 019408 96 DGLLYLTSTD 105 (341)
Q Consensus 96 gGlL~vt~TD 105 (341)
--++.+|+.+
T Consensus 75 ~~ii~lt~~~ 84 (128)
T d1yioa2 75 IPIVFITAHG 84 (128)
T ss_dssp CCEEEEESCT
T ss_pred CeEEEEEEEC
Confidence 3566666654
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=82.52 E-value=7.2 Score=28.50 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=50.2
Q ss_pred CEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC--C-CCHHHHHHHHHhcc
Q 019408 18 DFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF--G-SDSSFLRTVFNAVK 94 (341)
Q Consensus 18 ~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy--g-sp~~fld~al~~v~ 94 (341)
++|..+|-++...+.+++-++..|. .+. ...|..+.+..... ..||+|++|-. + +...++. .++...
T Consensus 1 KrILiVdDd~~~~~~l~~~L~~~g~------~v~-~a~~~~eal~~~~~--~~~dlillD~~mp~~~G~~~~~-~i~~~~ 70 (117)
T d2a9pa1 1 KKILIVDDEKPISDIIKFNMTKEGY------EVV-TAFNGREALEQFEA--EQPDIIILDLMLPEIDGLEVAK-TIRKTS 70 (117)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC------EEE-EESSHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHH-HHHTTC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCC------EEE-EECCHHHHHHHHHh--cCCCEEEeccccCCCCccHHHH-HHHhCC
Confidence 4789999999999999999998876 333 45566666655433 47999999962 2 1123333 334444
Q ss_pred cCCEEEEEec
Q 019408 95 RDGLLYLTST 104 (341)
Q Consensus 95 ~gGlL~vt~T 104 (341)
+--++.+|+.
T Consensus 71 ~~pvI~lt~~ 80 (117)
T d2a9pa1 71 SVPILMLSAK 80 (117)
T ss_dssp CCCEEEEESC
T ss_pred CCCEEEEecC
Confidence 4456666654
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=82.51 E-value=2.2 Score=36.06 Aligned_cols=68 Identities=10% Similarity=0.006 Sum_probs=42.2
Q ss_pred cccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCcccE
Q 019408 3 GCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFDL 73 (341)
Q Consensus 3 gsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fDv 73 (341)
||+..|...|+. .|+ +|+++|.+++.++-+.+.++..+. ++..+..|. .+++.+...+-.+.|+
T Consensus 10 as~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~------~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 82 (257)
T d2rhca1 10 ATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGV------EADGRTCDVRSVPEIEALVAAVVERYGPVDV 82 (257)
T ss_dssp CSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC------CEEEEECCTTCHHHHHHHHHHHHHHTCSCSE
T ss_pred CCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC------cEEEEEeecCCHHHHHHHHHHHHHHhCCCCE
Confidence 455555544443 576 599999999999988888876553 345555443 3334443333346788
Q ss_pred EEeC
Q 019408 74 IDID 77 (341)
Q Consensus 74 IdlD 77 (341)
++--
T Consensus 83 lVnn 86 (257)
T d2rhca1 83 LVNN 86 (257)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8754
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=82.46 E-value=0.23 Score=40.59 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=56.4
Q ss_pred ccccHhHHHHhhhCCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCC
Q 019408 2 CGCGIRSLRYLAEAKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGS 81 (341)
Q Consensus 2 agsG~rgir~a~e~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygs 81 (341)
+|.|..+|.+|+..|++ |++...+++-.+.+++ ++. +. +++-+-.++.+ ...+..+|.| +|.-|.
T Consensus 42 GGVG~~aiQlAk~~Ga~-Via~~~~~~k~~~~~~----lGa-----d~--vi~~~~~~~~~--~l~~~~~~~v-vD~Vgg 106 (177)
T d1o89a2 42 GGVGSTAVALLHKLGYQ-VVAVSGRESTHEYLKS----LGA-----SR--VLPRDEFAESR--PLEKQVWAGA-IDTVGD 106 (177)
T ss_dssp SHHHHHHHHHHHHTTCC-EEEEESCGGGHHHHHH----HTE-----EE--EEEGGGSSSCC--SSCCCCEEEE-EESSCH
T ss_pred ccchHHHHHHHHHcCCC-eEEEecchhHHHHHHh----hcc-----cc--ccccccHHHHH--HHHhhcCCee-EEEcch
Confidence 46788999999988886 7788888888776654 444 12 23322211111 1223457875 688553
Q ss_pred CHHHHHHHHHhcccCCEEEEE
Q 019408 82 DSSFLRTVFNAVKRDGLLYLT 102 (341)
Q Consensus 82 p~~fld~al~~v~~gGlL~vt 102 (341)
+.++..+++++++|-+.+.
T Consensus 107 --~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 107 --KVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp --HHHHHHHHTEEEEEEEEEC
T ss_pred --HHHHHHHHHhccccceEee
Confidence 7889999999999999874
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=82.22 E-value=2.6 Score=35.66 Aligned_cols=139 Identities=12% Similarity=0.055 Sum_probs=75.3
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCC-HHHHHHHHHHHHHc-CCCCCCCccEEEEeccH------HHHHHHhhhcCCc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGN-DAHRRVILGNLKSI-ERGSGDEKRWVVTHFDA------NRVLSECYLKREF 70 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis-~~A~~~i~~N~~~n-~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~ 70 (341)
.||+..|...|.+ .|+ +|+++|.+ ++..+.+.+.+... +. ++..+..|+ .+++.+...+-.+
T Consensus 11 Gas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~------~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 83 (260)
T d1x1ta1 11 GSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGV------KVLYDGADLSKGEAVRGLVDNAVRQMGR 83 (260)
T ss_dssp TCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTS------CEEEECCCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCC------cEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 3566666655443 577 69999986 67777777766532 32 344445444 3344443333345
Q ss_pred ccEEEeCC-CCCCHHHH----------------------HHHHHhcc--cCCEEEEEecCCCCCCCCCchhHHhhhcccc
Q 019408 71 FDLIDIDS-FGSDSSFL----------------------RTVFNAVK--RDGLLYLTSTDGYSSGGHRPNNSLASYGAYI 125 (341)
Q Consensus 71 fDvIdlDP-ygsp~~fl----------------------d~al~~v~--~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~ 125 (341)
.|+++--- ...+.+|. ..++..++ .+|-+..+++- .+..+....--|+++-
T Consensus 84 iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~----~~~~~~~~~~~Y~asK 159 (260)
T d1x1ta1 84 IDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASA----HGLVASANKSAYVAAK 159 (260)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG----GGTSCCTTCHHHHHHH
T ss_pred CcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccc----cceeccCCcchhhhhh
Confidence 79887554 21111111 13444443 24555544442 2333333344455443
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHhcCCcEEEEEe
Q 019408 126 LPMPYSNEIGLRMLIGGAVREASAQGYHVSPLFS 159 (341)
Q Consensus 126 ~~~~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~s 159 (341)
.++.-|...++++.+.+|+.+--+..
T Consensus 160 --------aal~~lt~~lA~el~~~gIrVN~I~P 185 (260)
T d1x1ta1 160 --------HGVVGFTKVTALETAGQGITANAICP 185 (260)
T ss_dssp --------HHHHHHHHHHHHHHTTTTEEEEEEEE
T ss_pred --------hhHHHhHHHHHHHhchhCcEEEEEec
Confidence 78888888888888877765544433
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.07 E-value=6.6 Score=29.03 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=46.1
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCC---CCCHHHHHHHHHhccc
Q 019408 19 FVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSF---GSDSSFLRTVFNAVKR 95 (341)
Q Consensus 19 ~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPy---gsp~~fld~al~~v~~ 95 (341)
+|..+|=++...+.+++-++..+- -.+.-...|..+.+..... ..||+|++|=. ..-..++...-+....
T Consensus 3 rILivDD~~~~~~~l~~~L~~~~~-----~~~v~~a~~g~~al~~~~~--~~~dlillD~~mP~~dG~e~~~~ir~~~~~ 75 (123)
T d1dz3a_ 3 KVCIADDNRELVSLLDEYISSQPD-----MEVIGTAYNGQDCLQMLEE--KRPDILLLDIIMPHLDGLAVLERIRAGFEH 75 (123)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSTT-----EEEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHHCSS
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCC-----cEEEEEECCHHHHHHHHHh--cCCCEEEEcCCCCCCCHHHHHHHHHhcCCC
Confidence 588999999999999999885431 1111134555555554432 47999999951 1222444432222222
Q ss_pred C-CEEEEEec
Q 019408 96 D-GLLYLTST 104 (341)
Q Consensus 96 g-GlL~vt~T 104 (341)
. -++.+|+.
T Consensus 76 ~~~ii~~t~~ 85 (123)
T d1dz3a_ 76 QPNVIMLTAF 85 (123)
T ss_dssp CCEEEEEEET
T ss_pred CCeEEEEECc
Confidence 2 25566665
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=82.02 E-value=4.3 Score=34.20 Aligned_cols=134 Identities=13% Similarity=0.118 Sum_probs=73.3
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHH------HHHHHhhhcCCccc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDAN------RVLSECYLKREFFD 72 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~------~~l~~~~~~~~~fD 72 (341)
.||+..|...|+. .|+ +|+++|.|++..+-+.+-++..+. ++..++.|+. +++.+...+-.+.|
T Consensus 18 Gas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~------~~~~~~~Dvs~~~~~~~~~~~~~~~~g~iD 90 (255)
T d1fmca_ 18 GAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGG------QAFACRCDITSEQELSALADFAISKLGKVD 90 (255)
T ss_dssp TTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTC------CEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC------cEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 3566666655443 576 599999999999888888876543 4445555543 33333333223579
Q ss_pred EEEeCC-------CCCCHHHHH---------------HHHHhc-cc-CCEEEEEecCCCCCCCCCchhHHhhhccccCCC
Q 019408 73 LIDIDS-------FGSDSSFLR---------------TVFNAV-KR-DGLLYLTSTDGYSSGGHRPNNSLASYGAYILPM 128 (341)
Q Consensus 73 vIdlDP-------ygsp~~fld---------------~al~~v-~~-gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~ 128 (341)
+++--. +-.+..-.+ .++..+ +. +|.+...++- .+..+....--|+++-
T Consensus 91 ilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~----~~~~~~~~~~~Y~asK--- 163 (255)
T d1fmca_ 91 ILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSM----AAENKNINMTSYASSK--- 163 (255)
T ss_dssp EEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG----GGTCCCTTCHHHHHHH---
T ss_pred EeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccccccccccccc----chhccccccccchhHH---
Confidence 887654 211111111 223333 22 4444433331 2333333444565543
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCCcE
Q 019408 129 PYSNEIGLRMLIGGAVREASAQGYHV 154 (341)
Q Consensus 129 ~~~~E~~lR~ll~~i~~~Aa~~~~~i 154 (341)
.|+.-|...++++.+++|+.+
T Consensus 164 -----aal~~lt~~lA~el~~~gIrV 184 (255)
T d1fmca_ 164 -----AAASHLVRNMAFDLGEKNIRV 184 (255)
T ss_dssp -----HHHHHHHHHHHHHHHTTTEEE
T ss_pred -----HHHHHHHHHHHHHhCccCeEE
Confidence 678888888888887775443
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=81.92 E-value=1.6 Score=37.18 Aligned_cols=134 Identities=22% Similarity=0.138 Sum_probs=70.4
Q ss_pred cccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhcCCcccE
Q 019408 3 GCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLKREFFDL 73 (341)
Q Consensus 3 gsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~~~~fDv 73 (341)
||+..|...+++ .|+ +|+++|.+++..+.+.+.+. .++..++.|+ .+++.+...+-.+.|+
T Consensus 13 as~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 82 (254)
T d1hdca_ 13 GARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELG---------DAARYQHLDVTIEEDWQRVVAYAREEFGSVDG 82 (254)
T ss_dssp TTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTG---------GGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred cCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC---------CceEEEEcccCCHHHHHHHHHHHHHHcCCccE
Confidence 555555555443 577 59999999887765554331 2444555543 3344443333336798
Q ss_pred EEeCC-CCCCHHHH----------------------HHHHHhcc--cCCEEEEEecCCCCCCCCCchhHHhhhccccCCC
Q 019408 74 IDIDS-FGSDSSFL----------------------RTVFNAVK--RDGLLYLTSTDGYSSGGHRPNNSLASYGAYILPM 128 (341)
Q Consensus 74 IdlDP-ygsp~~fl----------------------d~al~~v~--~gGlL~vt~TD~~~l~g~~~~~~~r~Yg~~~~~~ 128 (341)
++--. ...+.++. ..++..++ ++|-+...++-. +..+....--|+++-
T Consensus 83 lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~----~~~~~~~~~~Y~asK--- 155 (254)
T d1hdca_ 83 LVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAA----GLMGLALTSSYGASK--- 155 (254)
T ss_dssp EEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG----GTSCCTTCHHHHHHH---
T ss_pred EEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccch----hcccccchhhHHHHH---
Confidence 77654 21111111 13333322 345555444422 222223333455433
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCCcEEEEE
Q 019408 129 PYSNEIGLRMLIGGAVREASAQGYHVSPLF 158 (341)
Q Consensus 129 ~~~~E~~lR~ll~~i~~~Aa~~~~~i~Pl~ 158 (341)
.++.-|...++.+.+++|..+--+.
T Consensus 156 -----aal~~lt~~lA~e~a~~gIrVN~I~ 180 (254)
T d1hdca_ 156 -----WGVRGLSKLAAVELGTDRIRVNSVH 180 (254)
T ss_dssp -----HHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred -----HHHHHHHHHHHHHhCCCceEEEEee
Confidence 6788888888888888765544443
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=81.44 E-value=5.4 Score=33.62 Aligned_cols=68 Identities=10% Similarity=-0.016 Sum_probs=40.8
Q ss_pred ccccHhHHHHhhh---CCCCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccH------HHHHHHhhhc-CCcc
Q 019408 2 CGCGIRSLRYLAE---AKADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDA------NRVLSECYLK-REFF 71 (341)
Q Consensus 2 agsG~rgir~a~e---~ga~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA------~~~l~~~~~~-~~~f 71 (341)
.||+..|...++. .|+ +|+++|.|++..+-+.+.++..+. ++..+..|+ .+++.+.... +...
T Consensus 13 Gas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~------~~~~~~~D~s~~~~~~~~~~~~~~~~~g~i 85 (258)
T d1ae1a_ 13 GGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL------NVEGSVCDLLSRTERDKLMQTVAHVFDGKL 85 (258)
T ss_dssp SCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC------CEEEEECCTTCHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC------CceEEEeecCCHHHHHHHHHHHHHHhCCCc
Confidence 3566665555443 576 699999999888888887776553 344444443 3333333222 2357
Q ss_pred cEEEe
Q 019408 72 DLIDI 76 (341)
Q Consensus 72 DvIdl 76 (341)
|+++-
T Consensus 86 dilin 90 (258)
T d1ae1a_ 86 NILVN 90 (258)
T ss_dssp CEEEE
T ss_pred EEEec
Confidence 77764
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=81.06 E-value=0.23 Score=42.60 Aligned_cols=76 Identities=12% Similarity=0.106 Sum_probs=45.6
Q ss_pred CCEEEEeeCCHHHHHHHHHHHHHcCCCCCCCccEEEEeccHHHHHHHhhhcCCcccEEEeCCCCCCH-HHHHH-HHHhcc
Q 019408 17 ADFVMANDGNDAHRRVILGNLKSIERGSGDEKRWVVTHFDANRVLSECYLKREFFDLIDIDSFGSDS-SFLRT-VFNAVK 94 (341)
Q Consensus 17 a~~V~~~Dis~~A~~~i~~N~~~n~~~~~~~~~~~v~~~DA~~~l~~~~~~~~~fDvIdlDPygsp~-~fld~-al~~v~ 94 (341)
..+|+.+|+++...... .... .+++++++|+.+........+..+|+|++|--.+.. ...+- -...|+
T Consensus 108 ~~kI~giDId~~~~~~~-----~~~~-----~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~H~~~~v~~~~~~~~lLk 177 (232)
T d2bm8a1 108 DCQVIGIDRDLSRCQIP-----ASDM-----ENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLE 177 (232)
T ss_dssp CCEEEEEESCCTTCCCC-----GGGC-----TTEEEEECCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCC
T ss_pred CceEEecCcChhhhhhh-----hccc-----cceeeeecccccHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHhcccC
Confidence 46899999987432211 1111 468888988754322112234568999999743332 12222 236899
Q ss_pred cCCEEEEE
Q 019408 95 RDGLLYLT 102 (341)
Q Consensus 95 ~gGlL~vt 102 (341)
+||++.|.
T Consensus 178 ~GG~iIve 185 (232)
T d2bm8a1 178 EGDYFIIE 185 (232)
T ss_dssp TTCEEEEC
T ss_pred cCCEEEEE
Confidence 99999984
|