Citrus Sinensis ID: 019423

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
Protein Sequence
MSLLINQSVHFSRISCHQRSTAYGKQMAPGVSVHKSHSVAKKSIRCFSTNTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEEccccEEcccccccccEEEEEEEEcccccccccccccccHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcEEEEEEEcccccccccccEEEEcEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHccccHcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcc
Coil and Loop (DISEMBL)
msllinqsvhfsrischqrstaygkqmapgvsvhkshsvakksircfstntflSTLTVANLAAIGNAKALTMENVLEGAASVYtmadgslgdmfggflysaGQQANEAVLGQLSALSFTSLAVIFGAglvtslspctlsvlpltlgyigafgsgksraQIIGDSIAFSLGLATTLALLGvgasfagkaygqigtglplAASGLAIVMGLNLLEIIELqlpsffdnfdpraaaanfpSSVQAYLAGLTFAlaaspcstPVLATLLGYvatskdpliggtLLLSYTTGYVAPLLLAASFAGALQSLLSFRkfsswinpmsgalllggglytfldrlfpttmam
Flexible Loop (DISEMBL)
MSLLINQSVHFSRISCHQRSTAYGKQMAPGVSVHKSHSVAKKSIRCFSTNTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM
Low Complexity Region (SEG)
MSLLINQSVHFSRISCHQRSTAYGKQMAPGvsvhkshsvakksIRCFSTNTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSlglattlallgVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM
Disordered region (IsUnstruct)
********VHFSRISCH********************SVAKKSIRCFSTNTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFP*****
Disordered Region (DISOPRED)
**********************YGKQMAPGVSVHKSHSVAKKSIRCFSTNTFLSTLTVANLAAIGNAKALTMEN**************************************LSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSF****************VQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM
Disordered Region (DISEMBL)
MSLLINQSVHFSRISCHQ*********************AKKSIRCFSTNTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM
Disordered Region (DISPRO)
*SLLINQSVHFSRISCHQRSTAYGKQMAPGVSVHKSHSVAKKSIRCFSTNTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMA*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLLINQSVHFSRISCHQRSTAYGKQMAPGVSVHKSHSVAKKSIRCFSTNTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	341	2.2.26 [Sep-21-2011]
Q2QY07	362	Cytochrome c-type biogene	yes	no	0.912	0.859	0.713	1e-124
Q2RAR6	367	Cytochrome c-type biogene	yes	no	0.912	0.847	0.713	1e-124
Q9M5P3	354	Cytochrome c-type biogene	yes	no	0.979	0.943	0.730	1e-117
P51364	240	Putative cytochrome c-typ	N/A	no	0.677	0.962	0.303	2e-27
Q1XDC3	224	Putative cytochrome c-typ	N/A	no	0.592	0.901	0.317	2e-25
Q9JYM0	601	Thiol:disulfide interchan	yes	no	0.580	0.329	0.3	4e-11
Q9JTL9	601	Thiol:disulfide interchan	yes	no	0.580	0.329	0.290	1e-10
Q487R3	608	Thiol:disulfide interchan	yes	no	0.674	0.378	0.279	1e-09
Q87KW0	613	Thiol:disulfide interchan	yes	no	0.577	0.321	0.306	2e-09
P44202	213	Putative cytochrome c-typ	yes	no	0.501	0.802	0.265	3e-09

>sp|Q2QY07|CCDA2_ORYSJ Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 OS=Oryza sativa subsp. japonica GN=CCDA2 PE=2 SV=1

 Score =  445 bits (1145), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/325 (71%), Positives = 271/325 (83%), Gaps = 14/325 (4%)

Query: 30  GVSVHKSHSVAKKSIR------------CFSTNTFLSTLTVANLAAIGNAKALTMENVLE 77
           GV   +  SV+K +IR                   L+T+ V +L A G A A  + + L 
Sbjct: 39  GVPRERGSSVSKAAIRGARLEAAARCSLVRQRPMLLATVAVGSLVAAGAANATEIGDSLL 98

Query: 78  GAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCT 137
           G++ +  +AD S+GD FG  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPCT
Sbjct: 99  GSSGL-ALADLSIGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCT 157

Query: 138 LSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLP 197
           LSVLPLTLGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP
Sbjct: 158 LSVLPLTLGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLP 217

Query: 198 LAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCST 257
           +AASGLA++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCST
Sbjct: 218 VAASGLAVIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCST 277

Query: 258 PVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPM 317
           PVLATLLGYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQSLLSFR++S+WINP+
Sbjct: 278 PVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPI 337

Query: 318 SGALLLGGGLYTFLDRLFP-TTMAM 341
           SGA LLGGG+YT LDRLFP T+M M
Sbjct: 338 SGAFLLGGGVYTLLDRLFPATSMVM 362

Probably involved in the transfer of reducing equivalents from stroma to thylakoid lumen and required for the biogenesis of the plastid cytochrome b6f complex.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2RAR6|CCDA1_ORYSJ Cytochrome c-type biogenesis ccda-like chloroplastic protein 1 OS=Oryza sativa subsp. japonica GN=CCDA1 PE=2 SV=1

 Score =  444 bits (1143), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/325 (71%), Positives = 271/325 (83%), Gaps = 14/325 (4%)

Query: 30  GVSVHKSHSVAKKSIR------------CFSTNTFLSTLTVANLAAIGNAKALTMENVLE 77
           GV   +  SV+K +IR                   L+T+ V +L A G A A  + + L 
Sbjct: 44  GVPRERGSSVSKAAIRGARLEAAARCSLVRQRPMLLATVAVGSLVAAGAANATEIGDSLL 103

Query: 78  GAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCT 137
           G++ +  +AD S+GD FG  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPCT
Sbjct: 104 GSSGL-ALADLSVGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCT 162

Query: 138 LSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLP 197
           LSVLPLTLGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP
Sbjct: 163 LSVLPLTLGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLP 222

Query: 198 LAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCST 257
           +AASGLA++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCST
Sbjct: 223 VAASGLAVIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCST 282

Query: 258 PVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPM 317
           PVLATLLGYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQSLLSFR++S+WINP+
Sbjct: 283 PVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPI 342

Query: 318 SGALLLGGGLYTFLDRLFP-TTMAM 341
           SGA LLGGG+YT LDRLFP T+M M
Sbjct: 343 SGAFLLGGGVYTLLDRLFPATSMVM 367

Probably involved in the transfer of reducing equivalents from stroma to thylakoid lumen and required for the biogenesis of the plastid cytochrome b6f complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M5P3|CCDA_ARATH Cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Arabidopsis thaliana GN=CCDA PE=1 SV=1

 Score =  421 bits (1082), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/342 (73%), Positives = 280/342 (81%), Gaps = 8/342 (2%)

Query: 2   SLLINQSVHFSRISCHQRSTAYGKQMAPGVSVHKSHSVAKKSIRCFSTNTFLSTLTVANL 61
           S  +N    + R   H         ++  VS+ +  S   KSI+        S L VANL
Sbjct: 19  SCRLNHEKRWVRAGKHCELERERSLVSDAVSLERLES---KSIKL---AMLASGLGVANL 72

Query: 62  AAIGNAKALTMEN-VLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTS 120
             + +AKA  ++  VL+ A S+Y +A+GSLGD  G FLYSA QQANEAV  QLSALS TS
Sbjct: 73  VTLSSAKAADLKMIVLDQATSIYILAEGSLGDSVGNFLYSANQQANEAVQDQLSALSVTS 132

Query: 121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGV 180
           LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR Q+IGD++AF+LGLATTLALLG+
Sbjct: 133 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRGQVIGDTVAFALGLATTLALLGI 192

Query: 181 GASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQ 240
            ASFAGKAYGQIG GLP+AASGLAIVMGLNLLEIIELQLPSFF+NFDPRAAAANFPSSVQ
Sbjct: 193 VASFAGKAYGQIGQGLPVAASGLAIVMGLNLLEIIELQLPSFFNNFDPRAAAANFPSSVQ 252

Query: 241 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGA 300
           AYLAGLTFALAASPCSTPVLATLLGYVATS+DP+IGG+LLL+YTTGYVAPL++AASFAGA
Sbjct: 253 AYLAGLTFALAASPCSTPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLIVAASFAGA 312

Query: 301 LQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFP-TTMAM 341
           LQSLLS RK S+WINP+SGALLLGGGLYTFLDRLFP  TM M
Sbjct: 313 LQSLLSLRKVSAWINPISGALLLGGGLYTFLDRLFPAATMVM 354

Required for the transfer of reducing equivalents from stroma to thylakoid lumen. Involved in the biogenesis of the plastid cytochrome b6f complex by probably transferring reducing equivalents from stromal m-type thioredoxin (Trx-m) to the lumenal thioredoxin HCF164.

Arabidopsis thaliana (taxid: 3702)

>sp|P51364|YCXN_PORPU Putative cytochrome c-type biogenesis protein dbsD-like OS=Porphyra purpurea PE=3 SV=1

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 126/237 (53%), Gaps = 6/237 (2%)

Query: 98  LYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR 157
           LY++    N   L QL+ ++  S + +F +GL TS SPC +S+LP+ + YI   G   S+
Sbjct: 7   LYNSQHLINNITLYQLNHINIASFSFVFFSGLFTSFSPCLISILPICIMYISGEGQKLSQ 66

Query: 158 AQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIEL 217
              + +   F LG  ++   LG+ A+   K Y Q+  G+P+ ++ + I MG +LL I+ L
Sbjct: 67  IDKLKNLFFFCLGAISSFTTLGLIATLLAKTYSQLFNGIPVISALVIIYMGFSLLNIVPL 126

Query: 218 QLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGG 277
                 +N + R    N   +++ YL+G+   LA S CSTP+  TLL +V ++ +  IG 
Sbjct: 127 ST----NNLNTRINNTN--QNIKMYLSGVGIGLAISSCSTPIFVTLLIWVTSNHNLFIGL 180

Query: 278 TLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRL 334
             +L Y+ GY+ P+++ + F+    +  S    ++   P SG +LL  G ++    +
Sbjct: 181 IFILIYSIGYIFPIIIGSLFSSRFLTTASSPFLNNLWAPFSGTILLSAGTFSLFSSI 237

Could be involved in cytochrome c synthesis.

Porphyra purpurea (taxid: 2787)

>sp|Q1XDC3|YCXN_PORYE Putative cytochrome c-type biogenesis protein dbsD-like OS=Porphyra yezoensis PE=3 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 6/208 (2%)

Query: 97  FLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKS 156
           F+Y++    N   L QL+ L+ TS + IF +GL TSLSPC +S+LP+ + YI       +
Sbjct: 6   FVYNSQHFVNNITLYQLNHLNSTSFSFIFLSGLFTSLSPCIISILPVCILYIAGETQKLN 65

Query: 157 RAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIE 216
                 +   F LG  ++   LG+ A+   K Y Q   G+P  ++ + I MGLNLL I+ 
Sbjct: 66  PINKTKNLFLFCLGTISSFITLGILATLITKTYSQFFNGIPTISAVVIIYMGLNLLNIVH 125

Query: 217 LQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIG 276
           +  P F           N   + + YL+G+   +A S CSTP+  TLL ++ +++    G
Sbjct: 126 INSPKF------NGLVTNNNYNFKMYLSGVGIGIAISSCSTPIFVTLLVWINSTQKIFTG 179

Query: 277 GTLLLSYTTGYVAPLLLAASFAGALQSL 304
              +L Y+ GY+ P+++ + F+ +   L
Sbjct: 180 LIFILIYSIGYIFPIIIGSIFSTSFLKL 207

Could be involved in cytochrome c synthesis.

Porphyra yezoensis (taxid: 2788)

>sp|Q9JYM0|DSBD_NEIMB Thiol:disulfide interchange protein DsbD OS=Neisseria meningitidis serogroup B (strain MC58) GN=dsbD PE=1 SV=1

 Score = 69.3 bits (168), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 104/220 (47%), Gaps = 22/220 (10%)

Query: 120 SLAVIFGAGLVTSLSPCTLSVLPLTLG-YIGAFGSGKSRAQIIGDSIAFSLGLATTLALL 178
           +L   F AGL  S + C   +LP+     +G   +GK+RA ++  S+ +  GLA T  L+
Sbjct: 191 NLLAFFLAGLGLSFTACMYPLLPIVSSIVVGDKKAGKARAFVL--SVVYVQGLALTYTLV 248

Query: 179 GVGASFAG---KAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLP----SFFDNFDPRAA 231
           G+ A   G     + Q    + LAAS L +V+ L++  +  +QLP    S+F N   R +
Sbjct: 249 GIVAGLTGALLTVWLQ-QAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLS 307

Query: 232 AANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPL 291
                  V  ++ G+  AL   PC  P LA  LGY+  + D ++GG  L +   G   PL
Sbjct: 308 GGKI---VSVFIMGILSALIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPL 364

Query: 292 LLAASFAGALQSLLSFRKFSSWINPMS---GALLLGGGLY 328
           +   +F G +       K   W+N +    G +LL   +Y
Sbjct: 365 IAIGTFGGHI-----LPKAGDWMNAVKYAFGFILLAVAVY 399

Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps.

Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9JTL9|DSBD_NEIMA Thiol:disulfide interchange protein DsbD OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=dsbD PE=3 SV=2

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 104/220 (47%), Gaps = 22/220 (10%)

Query: 120 SLAVIFGAGLVTSLSPCTLSVLPLTLG-YIGAFGSGKSRAQIIGDSIAFSLGLATTLALL 178
           +L   F AGL  S + C   +LP+     +G   +GK+RA ++  S+ +  GL+ T  L+
Sbjct: 191 NLLAFFLAGLGLSFTACMYPLLPIVSSIVVGDKKAGKARAFVL--SVVYVQGLSLTYTLV 248

Query: 179 GVGASFAG---KAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLP----SFFDNFDPRAA 231
           G+ A   G     + Q    + LAAS L +V+ L++  +  +QLP    S+F N   R +
Sbjct: 249 GIVAGLTGALLTVWLQ-QAWVVLAASALMVVLALSMFGLFNIQLPNAVQSYFQNQSSRLS 307

Query: 232 AANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPL 291
                  V  ++ G+  AL   PC  P LA  LGY+  + D ++GG  L +   G   PL
Sbjct: 308 GGKI---VSVFIMGILSALIVGPCVAPPLAFALGYIGQTGDAVLGGLALYTLALGTGVPL 364

Query: 292 LLAASFAGALQSLLSFRKFSSWINPMS---GALLLGGGLY 328
           +   +F G +       +   W+N +    G +LL   +Y
Sbjct: 365 IAIGTFGGHI-----LPRAGDWMNAVKYAFGFILLAVAVY 399

Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps.

Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q487R3|DSBD_COLP3 Thiol:disulfide interchange protein DsbD OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=dsbD PE=3 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 113/254 (44%), Gaps = 24/254 (9%)

Query: 100 SAGQQANEAVLG-----QLSALS-----FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIG 149
            A QQ NE  +      QLS +        +L   F  GL+ S +PC   + P+  G I 
Sbjct: 166 DAAQQTNEGEVKKSEQHQLSDMLKQDSLLLTLIAFFVGGLLLSFTPCVFPMYPILTGIIV 225

Query: 150 AFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV--- 206
             G G +  +    S  +  G+A T  LLGV  + AG  +  +    P+   GL+I+   
Sbjct: 226 GQGEGLTTKKAFTLSFFYVQGMAITYTLLGVVVAMAGAKFQAVFQH-PIVLIGLSILFIF 284

Query: 207 MGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYL-AGLTFALAASPCSTPVLATLLG 265
           + L++  +  L LP+ + N     +      S+   L  G+   L ASPC+T  L   L 
Sbjct: 285 LALSMFGVFNLALPASWQNKLNNVSNKQKGGSITGVLMMGVISGLVASPCTTAPLTGALL 344

Query: 266 YVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMS---GALL 322
           Y++ + D ++G + L + + G   PLL+  S  G L       K  +W+N +    G LL
Sbjct: 345 YISQTGDVVLGASALYALSLGMGLPLLILGSSGGKL-----LPKAGAWMNIIKNIFGLLL 399

Query: 323 LGGGLYTFLDRLFP 336
           L   ++  L+R  P
Sbjct: 400 LAVPVF-LLERFIP 412

Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps.

Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (taxid: 167879)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q87KW0|DSBD_VIBPA Thiol:disulfide interchange protein DsbD OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=dsbD PE=3 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 25/222 (11%)

Query: 126 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGK-SRAQIIGDSIAFSLGLATTLALLGVGASF 184
           G GL  + +PC L + P+    +   GSGK S+ + +G S+ +  G+A T  LLG+  + 
Sbjct: 221 GVGL--AFTPCVLPMYPILTSIV--LGSGKLSQRRALGLSLVYVQGMALTYTLLGLVVAS 276

Query: 185 AGKAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPS----FFDNFDPRAAAANFPS 237
           AG  + Q     P    GL+I+   + L++  +  LQLPS    + +N   +       S
Sbjct: 277 AGMQF-QAAMQHPYVLIGLSILFVTLALSMFGVYTLQLPSSVQTWLNNLSNKQQGG---S 332

Query: 238 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 297
           S   +  G    L  SPC+T  L+  L YVA S D L GG  L +   G   PL+L A F
Sbjct: 333 SAGVFAMGAISGLVCSPCTTAPLSGALLYVAQSGDLLTGGIALYALAMGMGIPLILVAVF 392

Query: 298 AGALQSLLSFRKFSSWINPMS---GALLLGGGLYTFLDRLFP 336
              L       K   W++ +    G +LL   ++  L+R+ P
Sbjct: 393 GNKL-----LPKAGGWMDRVKTLFGFILLAAPIF-LLERILP 428

Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps.

Vibrio parahaemolyticus (taxid: 670)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|P44202|Y1454_HAEIN Putative cytochrome c-type biogenesis protein HI_1454 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1454 PE=3 SV=1

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 10/181 (5%)

Query: 121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGV 180
           +  +F AGL + LSPC   ++P+   Y G    G  +     ++  F LGL+ T   LG 
Sbjct: 8   IGTVFLAGLASFLSPCIFPIIPI---YFGILSKGGKKVL---NTFLFILGLSLTFVSLGF 61

Query: 181 GASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQ 240
              F G       T   + A  + I++G++ L I ++ L       + + +  +  ++++
Sbjct: 62  SFGFLGNILFSNTT--RIIAGVIVIILGIHQLGIFKIGLLERTKLVEIKTSGKS--TALE 117

Query: 241 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGA 300
           A++ GLTF+L  +PC  P+LA++L         L G +++  Y  G   P +L + F+ +
Sbjct: 118 AFVLGLTFSLGWTPCIGPILASVLALSGDEGSALYGASMMFVYVLGLATPFVLFSFFSDS 177

Query: 301 L 301
           L
Sbjct: 178 L 178

Could be involved in cytochrome c synthesis.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
225461322	358	PREDICTED: cytochrome c-type biogenesis	0.991	0.944	0.720	1e-132
255580440	350	Thiol:disulfide interchange protein dsbD	1.0	0.974	0.742	1e-130
356517207	344	PREDICTED: cytochrome c-type biogenesis	0.964	0.956	0.747	1e-128
358249182	344	cytochrome c-type biogenesis ccda-like c	0.926	0.918	0.758	1e-127
255646784	340	unknown [Glycine max]	0.964	0.967	0.741	1e-127
27464259	345	chloroplast biogenesis protein [Lotus ja	0.912	0.901	0.769	1e-124
224122910	265	predicted protein [Populus trichocarpa]	0.777	1.0	0.901	1e-124
449463144	362	PREDICTED: cytochrome c-type biogenesis	0.882	0.831	0.817	1e-123
122206055	362	RecName: Full=Cytochrome c-type biogenes	0.912	0.859	0.713	1e-122
122208139	367	RecName: Full=Cytochrome c-type biogenes	0.912	0.847	0.713	1e-122

>gi|225461322|ref|XP_002284546.1| PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 2 [Vitis vinifera] gi|302143076|emb|CBI20371.3| unnamed protein product [Vitis vinifera]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 260/361 (72%), Positives = 292/361 (80%), Gaps = 23/361 (6%)

Query: 1   MSLLINQS-----VHFSRISCHQRSTAYGKQMAPGVSVHKSHSVAK---KSIRCFS---- 48
           M+L+IN         F + S H+  T  GK   P V V K  ++A+   + I   S    
Sbjct: 1   MNLVINHRHSSYGTPFCKFSSHKHET--GKYKVP-VRVPKRSAMAEDLTQDIVSLSKTEK 57

Query: 49  TNTFL--------STLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYS 100
           + +FL        +       A    AKA  ++++LEGA SVYT+ADGS+GD FGGFLYS
Sbjct: 58  SGSFLIKTAATSSAFAAANFFATTDMAKAANIKDILEGATSVYTLADGSIGDWFGGFLYS 117

Query: 101 AGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQI 160
           AGQQAN AV  QLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGK RA++
Sbjct: 118 AGQQANAAVQDQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKGRAEV 177

Query: 161 IGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLP 220
           IG+S+AFSLGLATTLA+LGV ASFAGKAYGQIG GLPLAASGLA++MGLNLLEIIELQLP
Sbjct: 178 IGNSVAFSLGLATTLAILGVAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLP 237

Query: 221 SFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLL 280
           SFF+NFDPR+AAAN PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDP+IGG+LL
Sbjct: 238 SFFNNFDPRSAAANLPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLL 297

Query: 281 LSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMA 340
           L+YTTGYVAPLLLAASFAGALQSLLSFRKFS+WINP SGALLLGGG+YT LDRLFPT+M 
Sbjct: 298 LTYTTGYVAPLLLAASFAGALQSLLSFRKFSAWINPTSGALLLGGGIYTLLDRLFPTSMV 357

Query: 341 M 341
           M
Sbjct: 358 M 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580440|ref|XP_002531046.1| Thiol:disulfide interchange protein dsbD precursor, putative [Ricinus communis] gi|223529374|gb|EEF31339.1| Thiol:disulfide interchange protein dsbD precursor, putative [Ricinus communis]

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 260/350 (74%), Positives = 297/350 (84%), Gaps = 9/350 (2%)

Query: 1   MSLLINQSV------HFSRISCHQRSTAYGKQMAPGVSVHKSH-SVAKKSIRCFST-NTF 52
           MSLLINQSV      +  + + H +  A GK  +   ++ ++  S++K   RC S   T 
Sbjct: 1   MSLLINQSVSCYLNNNNGQRTNHSKEKATGKLSSTNENLRRNVLSLSKNDSRCSSRIKTI 60

Query: 53  LSTLTVANLAAIGNAKALTMENVLEGAA-SVYTMADGSLGDMFGGFLYSAGQQANEAVLG 111
            ++L V+NL  I  AKA++ + +LE A   +YT+ADG +GD  G  LYSAGQQANEAV  
Sbjct: 61  ATSLAVSNLINIDAAKAVSTDKLLEEATIYMYTLADGGIGDWLGRLLYSAGQQANEAVQD 120

Query: 112 QLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGL 171
           QLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRA+++ DSIAF+LGL
Sbjct: 121 QLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVADSIAFALGL 180

Query: 172 ATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAA 231
           ATTLALLG+GASFAGKAYGQIG GLPLAASGLA++MGLNLLEIIELQLPSFF+NFDPRAA
Sbjct: 181 ATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFNNFDPRAA 240

Query: 232 AANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPL 291
           AANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVA SKDP++GG+LLL+YTTGYVAPL
Sbjct: 241 AANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPIVGGSLLLTYTTGYVAPL 300

Query: 292 LLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM 341
           LLAASFAGALQSLLSFRKFS+WINPMSGALLLGGG+YTFLDRLFP +M+M
Sbjct: 301 LLAASFAGALQSLLSFRKFSAWINPMSGALLLGGGVYTFLDRLFPVSMSM 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517207|ref|XP_003527280.1| PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like [Glycine max]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 263/352 (74%), Positives = 295/352 (83%), Gaps = 23/352 (6%)

Query: 1   MSLLINQSVHFSR---ISC--HQRSTAYGKQMAPGVSVHKSHSVAKKSIRC-FSTN---- 50
           MSL  N S+       +SC  HQ     G+ + P ++ H+  S  +K +R  +  N    
Sbjct: 5   MSLCGNYSLQLQNRRIVSCNLHQD----GRHIVP-INTHQKPSKPEKCLRSKWKINGNNI 59

Query: 51  -TFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAV 109
            T +  +TVA+L A   AKA       E AAS+Y +ADGSLGD FGGFL+SAGQQANEAV
Sbjct: 60  GTCIGVMTVAHLVAPVAAKA-------EVAASIYALADGSLGDWFGGFLFSAGQQANEAV 112

Query: 110 LGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSL 169
            GQL++LSFTSLAVI+GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ++GDSIAFSL
Sbjct: 113 QGQLTSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQVVGDSIAFSL 172

Query: 170 GLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPR 229
           GLATTLALLGVGASFAGKAYGQIG GLPLAASGLAI+MGLNLLEIIEL+LPSFFD+FDPR
Sbjct: 173 GLATTLALLGVGASFAGKAYGQIGQGLPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPR 232

Query: 230 AAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVA 289
           AAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVA SKDP+IGG+LLL+YTTGYV+
Sbjct: 233 AAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVS 292

Query: 290 PLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM 341
           PLLLAASFAGALQSLLSFRKFS+WINP+SGA+LLGGG+YTFLDRLFP TM M
Sbjct: 293 PLLLAASFAGALQSLLSFRKFSAWINPISGAMLLGGGVYTFLDRLFPVTMVM 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249182|ref|NP_001240262.1| cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like [Glycine max] gi|32402380|gb|AAP81162.1| c-type cytochrome biogenesis protein [Glycine max] gi|255636862|gb|ACU18764.1| unknown [Glycine max]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 255/336 (75%), Positives = 286/336 (85%), Gaps = 20/336 (5%)

Query: 14  ISC--HQRSTAYGKQMAPGVSVHKSHSVAKKSIRCF------STNTFLSTLTVANLAAIG 65
           +SC  HQ     G+ + P ++ H+  S  +  +R        +  T +  +TVA+L A  
Sbjct: 21  VSCNLHQD----GRHIVP-INTHQKTSKPENCLRSKWKINGNNIRTCIGVMTVAHLVAPV 75

Query: 66  NAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIF 125
            AKA       E AAS+Y +ADGSL D FGGFLYSAGQQANEAV GQL++LSFTSLAVI+
Sbjct: 76  TAKA-------EVAASIYALADGSLNDWFGGFLYSAGQQANEAVQGQLTSLSFTSLAVIY 128

Query: 126 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFA 185
           GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRA+++GDSIAFSLGLATTLALLGVGASFA
Sbjct: 129 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGDSIAFSLGLATTLALLGVGASFA 188

Query: 186 GKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAG 245
           GKAYGQIG GLPLAASGLAI+MGLNLLEIIEL+LPSFFD+FDPRAAAANFPSSVQAYLAG
Sbjct: 189 GKAYGQIGQGLPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAG 248

Query: 246 LTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLL 305
           LTFALAASPCSTPVLATLLGYVA SKDP+IGG+LLL+YTTGYV+PLLLAASFAGALQSLL
Sbjct: 249 LTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQSLL 308

Query: 306 SFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM 341
           SFRKFS+WINP+SGA+LLGGG+YTFLDRLFP TM M
Sbjct: 309 SFRKFSAWINPISGAMLLGGGVYTFLDRLFPVTMVM 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646784|gb|ACU23864.1| unknown [Glycine max]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 261/352 (74%), Positives = 293/352 (83%), Gaps = 23/352 (6%)

Query: 1   MSLLINQSVHFSR---ISC--HQRSTAYGKQMAPGVSVHKSHSVAKKSIRC-FSTN---- 50
           MSL  N  +       +SC  HQ     G+ + P ++ H+  S  +K +R  +  N    
Sbjct: 1   MSLCGNYGLQLQNRRIVSCNLHQD----GRHIVP-INTHQKPSKPEKCLRSKWKINGNNI 55

Query: 51  -TFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAV 109
            T +  +TVA+L A   AKA       E AAS+Y +ADGSLGD FGGFL+SAGQQANEAV
Sbjct: 56  GTCIGVMTVAHLVAPVAAKA-------EVAASIYALADGSLGDWFGGFLFSAGQQANEAV 108

Query: 110 LGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSL 169
            GQL++LSFTSLAVI+GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ++GDSIAFSL
Sbjct: 109 QGQLTSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQVVGDSIAFSL 168

Query: 170 GLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPR 229
           GLATTLALLGVGASFAGKAYGQIG GLPLAASGLAI+MGLNLLEIIEL+LPSFFD+FDPR
Sbjct: 169 GLATTLALLGVGASFAGKAYGQIGQGLPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPR 228

Query: 230 AAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVA 289
           AAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVA SKDP+I G+LLL+YTTGYV+
Sbjct: 229 AAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIRGSLLLTYTTGYVS 288

Query: 290 PLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM 341
           PLLLAASFAGALQSLLSFRKFS+WINP+SGA+LLGGG+YTFLDRLFP TM M
Sbjct: 289 PLLLAASFAGALQSLLSFRKFSAWINPISGAMLLGGGVYTFLDRLFPVTMVM 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27464259|gb|AAO16018.1| chloroplast biogenesis protein [Lotus japonicus]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 251/326 (76%), Positives = 282/326 (86%), Gaps = 15/326 (4%)

Query: 23  YGKQMAPGVSVHKSHSVAKKSIRC-FSTN-----TFLSTLTVANLAAIGNAKALTMENVL 76
           +G+ + P ++VHK  S  +  ++  + +N     TF+  +T ANL A   AKA       
Sbjct: 28  HGRHVVP-INVHKKASEPENCLQSDWKSNGNNIRTFIGAMTAANLVAPIAAKA------- 79

Query: 77  EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPC 136
           E AAS Y +ADGS+ D FGG LYSAGQQANEAVL QLS+LSFTSLAVIFGAGLVTSLSPC
Sbjct: 80  EVAASFYDLADGSINDWFGGILYSAGQQANEAVLDQLSSLSFTSLAVIFGAGLVTSLSPC 139

Query: 137 TLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGL 196
           TLSVLPLTLGYIGAFGSGKSRA++IGDSIAFSLGLATTLALLGV ASFAGKAYGQIG GL
Sbjct: 140 TLSVLPLTLGYIGAFGSGKSRAEVIGDSIAFSLGLATTLALLGVAASFAGKAYGQIGQGL 199

Query: 197 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 256
           PLAASGLA++MGLNLLEIIELQLPSFFD+FDPR+ AAN PSSVQAYLAGLTFALAASPCS
Sbjct: 200 PLAASGLAVIMGLNLLEIIELQLPSFFDSFDPRSVAANLPSSVQAYLAGLTFALAASPCS 259

Query: 257 TPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 316
           TPVLATLLGYVA SKDP+IGG+LLL+YTTGY+APLLLAASFAGALQSLLSFRK+S+WINP
Sbjct: 260 TPVLATLLGYVAASKDPVIGGSLLLTYTTGYIAPLLLAASFAGALQSLLSFRKYSAWINP 319

Query: 317 MSGALLLGGGLYTFLDRLFP-TTMAM 341
           +SGA+LLGGG+YTFLD+LFP TTMAM
Sbjct: 320 ISGAMLLGGGVYTFLDKLFPATTMAM 345

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122910|ref|XP_002330394.1| predicted protein [Populus trichocarpa] gi|222871779|gb|EEF08910.1| predicted protein [Populus trichocarpa]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/265 (90%), Positives = 256/265 (96%)

Query: 77  EGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPC 136
           E AASVYT+ADGS+GD FGGFLYS+GQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPC
Sbjct: 1   EEAASVYTLADGSIGDWFGGFLYSSGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPC 60

Query: 137 TLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGL 196
           TLSVLPLTLGYIGAFGSGKSRA+I+GDSIAF+LGLATTLALLG+ ASFAGK YGQIG GL
Sbjct: 61  TLSVLPLTLGYIGAFGSGKSRAEIVGDSIAFALGLATTLALLGIAASFAGKTYGQIGQGL 120

Query: 197 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 256
           PLAASGLA++MGLNLLE+IELQLPSFF+NFDPRAAAANFPSSVQAYLAGLTFALAASPCS
Sbjct: 121 PLAASGLAVIMGLNLLEVIELQLPSFFNNFDPRAAAANFPSSVQAYLAGLTFALAASPCS 180

Query: 257 TPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 316
           TPVLATLLGYVA SKDP++GG+LLL+YTTGYVAPLLLAASFAGALQSLLSFRKFS+WINP
Sbjct: 181 TPVLATLLGYVAASKDPVVGGSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFSAWINP 240

Query: 317 MSGALLLGGGLYTFLDRLFPTTMAM 341
           MSGALLLGGG+YTFLDRLFP TMAM
Sbjct: 241 MSGALLLGGGVYTFLDRLFPPTMAM 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463144|ref|XP_004149294.1| PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like [Cucumis sativus] gi|449528927|ref|XP_004171453.1| PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein 2-like [Cucumis sativus]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/301 (81%), Positives = 274/301 (91%)

Query: 41  KKSIRCFSTNTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYS 100
           + S   F    F++ ++  +  A+  AKA T++++ EGAASVYT+ADG +GD FGG LYS
Sbjct: 62  RNSRNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGMGDWFGGILYS 121

Query: 101 AGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQI 160
           AGQQAN AV  QLSALSFTSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGKS+A++
Sbjct: 122 AGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEV 181

Query: 161 IGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLP 220
           +G+S+AFSLGLATTLALLG+GASFAGKAYGQIG GLPLAASGLA++MGLNLLEIIELQLP
Sbjct: 182 VGNSVAFSLGLATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLP 241

Query: 221 SFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLL 280
           SFF+NFDPR+AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDP+IGG+LL
Sbjct: 242 SFFNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIIGGSLL 301

Query: 281 LSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMA 340
           L+YTTGYV PLLLAASFAGALQSLLSFRKFSSWINP+SGALLLGGGLYTFLDRLFP TMA
Sbjct: 302 LTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGLYTFLDRLFPVTMA 361

Query: 341 M 341
           M
Sbjct: 362 M 362

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|122206055|sp|Q2QY07.1|CCDA2_ORYSJ RecName: Full=Cytochrome c-type biogenesis ccda-like chloroplastic protein 2; AltName: Full=Cytochrome b6f biogenesis protein CCDA2; Flags: Precursor gi|77552967|gb|ABA95763.1| Cytochrome C biogenesis protein transmembrane region containing protein, expressed [Oryza sativa Japonica Group]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/325 (71%), Positives = 271/325 (83%), Gaps = 14/325 (4%)

Query: 30  GVSVHKSHSVAKKSIR------------CFSTNTFLSTLTVANLAAIGNAKALTMENVLE 77
           GV   +  SV+K +IR                   L+T+ V +L A G A A  + + L 
Sbjct: 39  GVPRERGSSVSKAAIRGARLEAAARCSLVRQRPMLLATVAVGSLVAAGAANATEIGDSLL 98

Query: 78  GAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCT 137
           G++ +  +AD S+GD FG  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPCT
Sbjct: 99  GSSGL-ALADLSIGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCT 157

Query: 138 LSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLP 197
           LSVLPLTLGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP
Sbjct: 158 LSVLPLTLGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLP 217

Query: 198 LAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCST 257
           +AASGLA++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCST
Sbjct: 218 VAASGLAVIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCST 277

Query: 258 PVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPM 317
           PVLATLLGYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQSLLSFR++S+WINP+
Sbjct: 278 PVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPI 337

Query: 318 SGALLLGGGLYTFLDRLFP-TTMAM 341
           SGA LLGGG+YT LDRLFP T+M M
Sbjct: 338 SGAFLLGGGVYTLLDRLFPATSMVM 362

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|122208139|sp|Q2RAR6.1|CCDA1_ORYSJ RecName: Full=Cytochrome c-type biogenesis ccda-like chloroplastic protein 1; AltName: Full=Cytochrome b6f biogenesis protein CCDA1; Flags: Precursor gi|77548619|gb|ABA91416.1| Cytochrome C biogenesis protein transmembrane region containing protein, expressed [Oryza sativa Japonica Group] gi|215769034|dbj|BAH01263.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/325 (71%), Positives = 271/325 (83%), Gaps = 14/325 (4%)

Query: 30  GVSVHKSHSVAKKSIR------------CFSTNTFLSTLTVANLAAIGNAKALTMENVLE 77
           GV   +  SV+K +IR                   L+T+ V +L A G A A  + + L 
Sbjct: 44  GVPRERGSSVSKAAIRGARLEAAARCSLVRQRPMLLATVAVGSLVAAGAANATEIGDSLL 103

Query: 78  GAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCT 137
           G++ +  +AD S+GD FG  LYSAGQQANEAV  QLSALSFTSLAVIFGAGLVTSLSPCT
Sbjct: 104 GSSGL-ALADLSVGDWFGNLLYSAGQQANEAVQDQLSALSFTSLAVIFGAGLVTSLSPCT 162

Query: 138 LSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLP 197
           LSVLPLTLGYIGAFGSGK R++++G+S+AFSLGLATTLA+LGV ASFAGKAYGQ+G GLP
Sbjct: 163 LSVLPLTLGYIGAFGSGKDRSEVVGNSVAFSLGLATTLAILGVAASFAGKAYGQVGQGLP 222

Query: 198 LAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCST 257
           +AASGLA++MGLNLLE+IELQLPSFF ++DPRAAAAN PSSVQAYLAGLTFALAASPCST
Sbjct: 223 VAASGLAVIMGLNLLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFALAASPCST 282

Query: 258 PVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPM 317
           PVLATLLGYVATS+DP++GG+LLL+YTTGYVAPLL+AASFAGALQSLLSFR++S+WINP+
Sbjct: 283 PVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSAWINPI 342

Query: 318 SGALLLGGGLYTFLDRLFP-TTMAM 341
           SGA LLGGG+YT LDRLFP T+M M
Sbjct: 343 SGAFLLGGGVYTLLDRLFPATSMVM 367

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
TIGR_CMR|CHY_1095	395	CHY_1095 "thioredoxin domain s	0.668	0.577	0.319	2e-24
UNIPROTKB|Q748P3	228	dsbD "Thiol:disulfide intercha	0.615	0.921	0.303	2.9e-23
TIGR_CMR|GSU_2958	228	GSU_2958 "thiol:disulfide inte	0.615	0.921	0.303	2.9e-23
UNIPROTKB|Q5LUR2	245	soxV "Sulfur oxidation V prote	0.583	0.812	0.294	2e-17
TIGR_CMR|SPO_0991	245	SPO_0991 "sulfur oxidation V p	0.583	0.812	0.294	2e-17
TIGR_CMR|CBU_1723	630	CBU_1723 "thiol:disulfide inte	0.630	0.341	0.294	5.3e-11
UNIPROTKB|Q5LS73	250	ccdA "Cytochrome c-type biogen	0.571	0.78	0.306	6.8e-11
TIGR_CMR|SPO_1896	250	SPO_1896 "cytochrome c-type bi	0.571	0.78	0.306	6.8e-11
TIGR_CMR|CPS_0953	608	CPS_0953 "thiol:disulfide inte	0.762	0.427	0.245	6.9e-10
TIGR_CMR|SO_0696	610	SO_0696 "thiol:disulfide inter	0.530	0.296	0.284	6.2e-09

TIGR_CMR|CHY_1095 CHY_1095 "thioredoxin domain selenoprotein/cytochrome C biogenesis family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 75/235 (31%), Positives = 109/235 (46%)

Query:   100 SAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ 159
             S  Q   + + G L      +L V+F  G+ TS +PC L ++PL +GY G + +G+S A+
Sbjct:   167 SFAQTLADKLPGLLGDSKLLALFVVFLGGIATSFTPCILGMIPLIIGYTGGY-AGRSPAK 225

Query:   160 IIGDSIAFSXXXXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQL 219
                 S+ F            VG    G                +AI+MG  ++    + L
Sbjct:   226 GFIYSLFFVLGLATTLTLLGVGIGVLGTFIKSRLFAFNFILGIVAILMGFAVMGFYTINL 285

Query:   220 PSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTL 279
             P       P      F S    YL GL F L+ASPC+TPVL  ++ Y      PL GG L
Sbjct:   286 PGL--KRMPVKGTGLFSS----YLMGLFFGLSASPCATPVLIVIVTYALAKASPLFGGAL 339

Query:   280 LLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRL 334
             L SY+ G+  PL+LA +F+  L  + S  ++   IN + G +L+  GLY    RL
Sbjct:   340 LFSYSFGHGLPLILAGTFSAFLGKITSLGRYGEIINYIFGGILVLYGLYLLFGRL 394

GO:0017004 "cytochrome complex assembly" evidence=ISS

UNIPROTKB|Q748P3 dsbD "Thiol:disulfide interchange protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 67/221 (30%), Positives = 110/221 (49%)

Query:   118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXX 177
             F +   +F  G+++S SPC L+ +PL +G++G + + +SR +    S++F          
Sbjct:    16 FLAFVAVFVGGVLSSASPCVLATIPLVVGFVGGYAA-ESRKKAFLYSLSFIVGLSLTFTI 74

Query:   178 XXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPS 237
                 A+  G  +G +G     A   +A+ MGL ++   EL+LP     F P+     F  
Sbjct:    75 FGAAAALLGTMFGTVGGWWYAAVGAVAVAMGLQMMGFYELRLP-VLPQFRPKRGG--FWG 131

Query:   238 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 297
                A L GL F +A+SPC+TPVL  +L + A   + L G  LL +Y  G+   +L A +F
Sbjct:   132 ---ALLLGLFFGVASSPCATPVLVVILSFAALQGNILYGTLLLFTYALGHCLLMLAAGTF 188

Query:   298 AGALQSLLSFR---KFSSWINPMSGALLLGGGLYTFLDRLF 335
              G +++  + R     S W    SGA++   G + F+ R F
Sbjct:   189 TGFVEAFAASRGVANVSHWAKRGSGAVIALAGAW-FIWRAF 228

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2958 GSU_2958 "thiol:disulfide interchange protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 67/221 (30%), Positives = 110/221 (49%)

Query:   118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXX 177
             F +   +F  G+++S SPC L+ +PL +G++G + + +SR +    S++F          
Sbjct:    16 FLAFVAVFVGGVLSSASPCVLATIPLVVGFVGGYAA-ESRKKAFLYSLSFIVGLSLTFTI 74

Query:   178 XXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPS 237
                 A+  G  +G +G     A   +A+ MGL ++   EL+LP     F P+     F  
Sbjct:    75 FGAAAALLGTMFGTVGGWWYAAVGAVAVAMGLQMMGFYELRLP-VLPQFRPKRGG--FWG 131

Query:   238 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 297
                A L GL F +A+SPC+TPVL  +L + A   + L G  LL +Y  G+   +L A +F
Sbjct:   132 ---ALLLGLFFGVASSPCATPVLVVILSFAALQGNILYGTLLLFTYALGHCLLMLAAGTF 188

Query:   298 AGALQSLLSFR---KFSSWINPMSGALLLGGGLYTFLDRLF 335
              G +++  + R     S W    SGA++   G + F+ R F
Sbjct:   189 TGFVEAFAASRGVANVSHWAKRGSGAVIALAGAW-FIWRAF 228

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LUR2 soxV "Sulfur oxidation V protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 63/214 (29%), Positives = 100/214 (46%)

Query:   121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAF------GSGK----SRAQIIGDSIAFSXX 170
             L  +F AGL++  +PC L ++P  L Y+G        G G+    ++ ++I  S+AF+  
Sbjct:     7 LGALF-AGLLSFFTPCVLPMVPFYLSYMGGLSMAELRGDGRIAPGAQRRLIVSSVAFAAG 65

Query:   171 XXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRA 230
                      +GA+  G+ +G     L  AA+ + +V GL+ L +I + L       D   
Sbjct:    66 VTSVFMMLGMGATALGRLFGTYLDTLSWAAAAILVVFGLHFLGVIRVPLLYREARMDSTM 125

Query:   231 AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAP 290
              A+     + AYL GL F    +PC  P LA +L   +   +   GG LLL Y  G  AP
Sbjct:   126 PASTL---LGAYLMGLAFGFGWTPCVGPALAAILMIASGMGEIWRGGLLLLVYGIGMTAP 182

Query:   291 LLLAASFAGALQSLLS-FRKFSSWINPMSGALLL 323
              ++AA FA      +   R   +W+    GA+L+
Sbjct:   183 FVVAAFFARPFLGWVQRHRAAFAWVEKGMGAMLI 216

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0019417 "sulfur oxidation" evidence=ISS

TIGR_CMR|SPO_0991 SPO_0991 "sulfur oxidation V protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 63/214 (29%), Positives = 100/214 (46%)

Query:   121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAF------GSGK----SRAQIIGDSIAFSXX 170
             L  +F AGL++  +PC L ++P  L Y+G        G G+    ++ ++I  S+AF+  
Sbjct:     7 LGALF-AGLLSFFTPCVLPMVPFYLSYMGGLSMAELRGDGRIAPGAQRRLIVSSVAFAAG 65

Query:   171 XXXXXXXXXVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRA 230
                      +GA+  G+ +G     L  AA+ + +V GL+ L +I + L       D   
Sbjct:    66 VTSVFMMLGMGATALGRLFGTYLDTLSWAAAAILVVFGLHFLGVIRVPLLYREARMDSTM 125

Query:   231 AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAP 290
              A+     + AYL GL F    +PC  P LA +L   +   +   GG LLL Y  G  AP
Sbjct:   126 PASTL---LGAYLMGLAFGFGWTPCVGPALAAILMIASGMGEIWRGGLLLLVYGIGMTAP 182

Query:   291 LLLAASFAGALQSLLS-FRKFSSWINPMSGALLL 323
              ++AA FA      +   R   +W+    GA+L+
Sbjct:   183 FVVAAFFARPFLGWVQRHRAAFAWVEKGMGAMLI 216

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0019417 "sulfur oxidation" evidence=ISS

TIGR_CMR|CBU_1723 CBU_1723 "thiol:disulfide interchange protein DsbD" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 180 (68.4 bits), Expect = 5.3e-11, P = 5.3e-11
 Identities = 68/231 (29%), Positives = 99/231 (42%)

Query:   118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXX 177
             F  L   FG GL+ S +PC L ++P+  G I   G  K   +  G S+ +          
Sbjct:   221 FFVLLSFFGFGLLLSFTPCVLPMIPVLSGII--VGQQKYPKRAFGLSLMYVLGMAITYAI 278

Query:   178 XXVGASFAGKAYGQIGTGLPLAA---SGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAAN 234
               V   F G    Q     P      S L I M L+L  + +LQLP     +  R A A+
Sbjct:   279 AGVIFGFIGSTV-QAAFQNPWLIGLFSLLFIAMALSLFGLYDLQLPQ---RWQTRLAQAS 334

Query:   235 FPSSVQAYLA----GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAP 290
                    YL     G    L  SPC TP L  +LGY++ + +  +GG  L +   G  AP
Sbjct:   335 DRQKHGTYLGTALMGALSTLILSPCVTPALVGVLGYISHTGNASLGGVALFTMGLGMGAP 394

Query:   291 LLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTTMAM 341
             LLL  +F+   + L     + + I  + G L+L   ++  L R+ P T+ M
Sbjct:   395 LLLLGAFSR--KWLPKAGPWMTVIKHILGVLMLAVAVW-LLARILPGTVTM 442

GO:0009055 "electron carrier activity" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=ISS

UNIPROTKB|Q5LS73 ccdA "Cytochrome c-type biogenesis protein CcdA" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 168 (64.2 bits), Expect = 6.8e-11, P = 6.8e-11
 Identities = 64/209 (30%), Positives = 92/209 (44%)

Query:   128 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXXVGA--SFA 185
             G+V+ LSPC L ++P  L Y+     G+ + Q      A             V     F 
Sbjct:    22 GIVSFLSPCVLPIVPPYLAYMSGVTLGEIQDQAAARRKATLAALFFVLGLSTVFLLLGFT 81

Query:   186 GKAYGQ-IGTGLPLAA--SGLA-IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV-Q 240
               A+G  + +   L A  SG+  IV GL+ L +  + L    D  + R    +   SV  
Sbjct:    82 ASAFGAFVLSNQELFAKVSGVVVIVFGLHFLSVFRIPL---LDR-EARMQTGDAGGSVFG 137

Query:   241 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLS-YTTGYVAPLLLAASFAG 299
             AY+ GL FA   +PC  P L  +L  +A S+  +  GTLLL  Y  G   P LLAA F  
Sbjct:   138 AYVLGLAFAFGWTPCIGPQLGAILS-LAASEASVARGTLLLGVYAAGLGVPFLLAAMFLS 196

Query:   300 ALQSLLS-FRKFSSWINPMSGALLLGGGL 327
                +L++  +     I  + G LLL  G+
Sbjct:   197 RSMALMNRIKPHMGLIEKVMGGLLLFVGI 225

GO:0003674 "molecular_function" evidence=ND

GO:0017004 "cytochrome complex assembly" evidence=ISS

TIGR_CMR|SPO_1896 SPO_1896 "cytochrome c-type biogenesis protein CcdA" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 168 (64.2 bits), Expect = 6.8e-11, P = 6.8e-11
 Identities = 64/209 (30%), Positives = 92/209 (44%)

Query:   128 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXXVGA--SFA 185
             G+V+ LSPC L ++P  L Y+     G+ + Q      A             V     F 
Sbjct:    22 GIVSFLSPCVLPIVPPYLAYMSGVTLGEIQDQAAARRKATLAALFFVLGLSTVFLLLGFT 81

Query:   186 GKAYGQ-IGTGLPLAA--SGLA-IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV-Q 240
               A+G  + +   L A  SG+  IV GL+ L +  + L    D  + R    +   SV  
Sbjct:    82 ASAFGAFVLSNQELFAKVSGVVVIVFGLHFLSVFRIPL---LDR-EARMQTGDAGGSVFG 137

Query:   241 AYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLS-YTTGYVAPLLLAASFAG 299
             AY+ GL FA   +PC  P L  +L  +A S+  +  GTLLL  Y  G   P LLAA F  
Sbjct:   138 AYVLGLAFAFGWTPCIGPQLGAILS-LAASEASVARGTLLLGVYAAGLGVPFLLAAMFLS 196

Query:   300 ALQSLLS-FRKFSSWINPMSGALLLGGGL 327
                +L++  +     I  + G LLL  G+
Sbjct:   197 RSMALMNRIKPHMGLIEKVMGGLLLFVGI 225

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=ISS

TIGR_CMR|CPS_0953 CPS_0953 "thiol:disulfide interchange protein DsbD" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 170 (64.9 bits), Expect = 6.9e-10, P = 6.9e-10
 Identities = 68/277 (24%), Positives = 118/277 (42%)

Query:    67 AKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFG 126
             +K + +   + G ++    +D +     G    S   Q ++ +L Q S L  T +A   G
Sbjct:   146 SKVIKLSKFILGESTSAPSSDAAQQTNEGEVKKSEQHQLSD-MLKQDSLL-LTLIAFFVG 203

Query:   127 AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXXVGASFAG 186
              GL+ S +PC   + P+  G I   G G +  +    S  +            V  + AG
Sbjct:   204 -GLLLSFTPCVFPMYPILTGIIVGQGEGLTTKKAFTLSFFYVQGMAITYTLLGVVVAMAG 262

Query:   187 KAYGQIGTGLPLAASGLAIV---MGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYL 243
               +  +    P+   GL+I+   + L++  +  L LP+ + N     +      S+   L
Sbjct:   263 AKFQAVFQH-PIVLIGLSILFIFLALSMFGVFNLALPASWQNKLNNVSNKQKGGSITGVL 321

Query:   244 A-GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQ 302
               G+   L ASPC+T  L   L Y++ + D ++G + L + + G   PLL+  S  G L 
Sbjct:   322 MMGVISGLVASPCTTAPLTGALLYISQTGDVVLGASALYALSLGMGLPLLILGSSGGKL- 380

Query:   303 SLLSFRKFSSWINPMS---GALLLGGGLYTFLDRLFP 336
                   K  +W+N +    G LLL   ++  L+R  P
Sbjct:   381 ----LPKAGAWMNIIKNIFGLLLLAVPVF-LLERFIP 412

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=ISS

GO:0047134 "protein-disulfide reductase activity" evidence=ISS

TIGR_CMR|SO_0696 SO_0696 "thiol:disulfide interchange protein DsbD" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 164 (62.8 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
 Identities = 53/186 (28%), Positives = 84/186 (45%)

Query:   120 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSXXXXXXXXXXX 179
             +L + FG G+  +L+PC   + P+  G I   G   S A+    S+A+            
Sbjct:   200 TLVIFFGLGIGLALTPCVFPMYPILSGIIVGQGQKLSTAKAFTLSMAYVQGMAITYSILG 259

Query:   180 VGASFAGKAYGQIGTGLPLAASGLAI---VMGLNLLEIIELQLPSFF-DNFDPRAAAANF 235
             +  + AG  Y Q     P     LAI   V+ L++  + +L+LPS F +  +  +     
Sbjct:   260 LVVASAGMKY-QAALQHPAVLVVLAILFFVLSLSMFGLYDLKLPSRFQEKMNSISNNQKG 318

Query:   236 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAA 295
              + +  +L G+   L ASPC+T  L+  L YVA + D L G   L   + G   PLL+  
Sbjct:   319 GNLIGVFLMGVISGLVASPCTTAPLSGALVYVAQTGDLLQGFLALYVLSMGMGVPLLIIG 378

Query:   296 SFAGAL 301
             +  G L
Sbjct:   379 TSGGKL 384

GO:0003824 "catalytic activity" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2QY07	CCDA2_ORYSJ	No assigned EC number	0.7138	0.9120	0.8591	yes	no
Q9M5P3	CCDA_ARATH	No assigned EC number	0.7309	0.9794	0.9435	yes	no
Q2RAR6	CCDA1_ORYSJ	No assigned EC number	0.7138	0.9120	0.8474	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	341
pfam02683	206	pfam02683, DsbD, Cytochrome C biogenesis protein t	9e-39
COG0785	220	COG0785, CcdA, Cytochrome c biogenesis protein [Po	2e-31
COG4232	569	COG4232, COG4232, Thiol:disulfide interchange prot	2e-19
PRK00293	571	PRK00293, dipZ, thiol:disulfide interchange protei	1e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001

>gnl|CDD|217183 pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region

 Score =  136 bits (344), Expect = 9e-39
 Identities = 70/208 (33%), Positives = 102/208 (49%), Gaps = 2/208 (0%)

Query: 124 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGAS 183
            F AGL++ LSPC L ++P  L YI     G  +  ++  ++ F LGL+     LG GA+
Sbjct: 1   AFLAGLLSFLSPCILPLIPAYLSYISGVSLGDRKQGVLLKALLFVLGLSIVFLSLGYGAA 60

Query: 184 FAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYL 243
           F G  +      L + A  + I+MGL+ L +  +                     + A+L
Sbjct: 61  FLGGLFRDYLGYLRVIAGIIVILMGLHFLGVFPIGFLRKLRL--GHKKLKVEGPMLGAFL 118

Query: 244 AGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQS 303
            G+ FAL  +PC  P+LA++L   A+S   L+   LL+ Y  G   P LLA+ FAG+L  
Sbjct: 119 LGMLFALGWTPCIGPILASVLALAASSGSLLLAALLLVVYVLGLGIPFLLASLFAGSLLF 178

Query: 304 LLSFRKFSSWINPMSGALLLGGGLYTFL 331
           L   RK S WI   SG LL+  G+   L
Sbjct: 179 LRWLRKNSRWIRIASGVLLILIGILLLL 206

This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family. Length = 206

>gnl|CDD|223856 COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]

 Score =  117 bits (295), Expect = 2e-31
 Identities = 74/217 (34%), Positives = 109/217 (50%), Gaps = 6/217 (2%)

Query: 114 SALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLAT 173
           + +   S+ + F AGL++ LSPC L +LP  L Y+   GS  +R  ++  S+ F LG AT
Sbjct: 6   ALVGTVSILLAFLAGLLSFLSPCVLPLLPAYLSYLAG-GSLGARKSVLLASLLFVLGFAT 64

Query: 174 TLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAA 233
              LLG+GAS  G         L   A  L I++GL  L ++ L L   F  F  +    
Sbjct: 65  VFVLLGIGASGLGAFLPLNRLYLRYIAGILLILLGLLFLGVLRLPLLLRFARFQLKGK-- 122

Query: 234 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLL 293
              +++ A+L GL FAL  +PC  P+L ++L   A++   ++G  LL +Y  G   P LL
Sbjct: 123 -SVTALGAFLLGLLFALGWTPCIGPILGSILALAASTGSVVLGALLLAAYALGLALPFLL 181

Query: 294 AASFAGALQSLLS--FRKFSSWINPMSGALLLGGGLY 328
            A  +G      S   R+ S  I  + GALL+  GL 
Sbjct: 182 LALLSGRALKAFSRKLRRHSGAIEIVGGALLILLGLL 218

Length = 220

>gnl|CDD|226685 COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 88.6 bits (220), Expect = 2e-19
 Identities = 66/212 (31%), Positives = 91/212 (42%), Gaps = 21/212 (9%)

Query: 100 SAGQQANEAVLGQL--SALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSR 157
           +A QQ        L  S L        F  GL+ + +PC L +LPL  G +   GS K  
Sbjct: 153 AAEQQEGADSAATLKWSLLLA------FLGGLLLNFTPCVLPMLPLLSGIV--LGSAKRA 204

Query: 158 AQIIGDSIAFSLGL--ATTLALLGVGASFAGKAYGQIGTGL--PLAASGLAIVM---GLN 210
           ++     ++F      A    LLG+ A+ AG         L  P    GLA +     L+
Sbjct: 205 SKARAFGLSFVYVQGMALAYTLLGLVAAAAG---LGWQAQLQQPWVLGGLAALFVLLALS 261

Query: 211 LLEIIELQLP-SFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT 269
           +  + ELQLP S       ++  A+  S V A+  G    L  SPC+ P LA  L Y+A 
Sbjct: 262 MFGLFELQLPSSLQTRLTQQSNRASGGSIVGAFFMGALAGLVVSPCTAPPLAGALLYIAQ 321

Query: 270 SKDPLIGGTLLLSYTTGYVAPLLLAASFAGAL 301
           S + L+GG  L +   G   PLLL   F   L
Sbjct: 322 SGNALLGGLALYALGLGMGLPLLLIGVFGNRL 353

Length = 569

>gnl|CDD|234717 PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional

 Score = 64.8 bits (159), Expect = 1e-11
 Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 30/215 (13%)

Query: 103 QQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIG 162
                     L++L ++ L   F  G+  + +PC L + P+  G +       S A+ + 
Sbjct: 152 PAPAGQATASLASLPWS-LLWFFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARALL 210

Query: 163 DSIAFSLGLATTLALLG-VGASFAGKAYGQIGTGLPLAA-----------SGLAIVMGLN 210
            S  +  G+A T  LLG V A+           GL   A           S L +++ L+
Sbjct: 211 LSFVYVQGMALTYTLLGLVVAAA----------GLQFQAALQHPYVLIGLSILFVLLALS 260

Query: 211 LLEIIELQLPSFF----DNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGY 266
           +  +  LQLPS           R    +       ++ G    L  SPC+T  L+  L Y
Sbjct: 261 MFGLFTLQLPSSLQTRLTLLSNRQQGGSLGG---VFVMGAISGLICSPCTTAPLSGALLY 317

Query: 267 VATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGAL 301
           +A S D L+GG  L     G   PL+L  +F   L
Sbjct: 318 IAQSGDLLLGGLTLYLLALGMGLPLILITTFGNKL 352

Length = 571

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 6/41 (14%)

Query: 140 VLPLTLGYI---GAFGSGKSRAQIIGDSIAFSLGLATTLAL 177
           V+P + G+    G  GSGKS    IGD+I F+LGL+++ A+
Sbjct: 18  VIPFSKGFTVISGPNGSGKSN---IGDAILFALGLSSSKAM 55

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	341
PF02683	211	DsbD: Cytochrome C biogenesis protein transmembran	100.0
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	100.0
COG0785	220	CcdA Cytochrome c biogenesis protein [Posttranslat	99.98
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	99.95
COG2836	232	Uncharacterized conserved protein [Function unknow	99.89
PF13386	199	DsbD_2: Cytochrome C biogenesis protein transmembr	99.89
PRK10019	279	nickel/cobalt efflux protein RcnA; Provisional	99.0
COG0785	220	CcdA Cytochrome c biogenesis protein [Posttranslat	98.88
PF02683	211	DsbD: Cytochrome C biogenesis protein transmembran	98.78
PF11139	214	DUF2910: Protein of unknown function (DUF2910); In	98.54
COG2215	303	ABC-type uncharacterized transport system, permeas	98.36
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	98.07
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	98.06
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	97.89
PRK09304	207	arginine exporter protein; Provisional	97.87
COG1280	208	RhtB Putative threonine efflux protein [Amino acid	97.83
PRK10229	206	threonine efflux system; Provisional	97.77
PRK10958	212	leucine export protein LeuE; Provisional	97.73
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	97.52
PRK10323	195	cysteine/O-acetylserine exporter; Provisional	97.31
PF01914	203	MarC: MarC family integral membrane protein; Inter	96.98
PF09930	224	DUF2162: Predicted transporter (DUF2162); InterPro	96.81
PF03824	282	NicO: High-affinity nickel-transport protein; Inte	96.73
PRK10995	221	inner membrane protein; Provisional	96.7
TIGR00427	201	membrane protein, MarC family. MarC is a protein t	96.67
PRK11111	214	hypothetical protein; Provisional	96.55
PF13386	199	DsbD_2: Cytochrome C biogenesis protein transmembr	96.52
TIGR00948	177	2a75 L-lysine exporter.	96.14
COG2095	203	MarC Multiple antibiotic transporter [Intracellula	96.09
PRK10739	197	putative antibiotic transporter; Provisional	95.94
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	95.71
PF09948	191	DUF2182: Predicted metal-binding integral membrane	95.4
PRK10019	279	nickel/cobalt efflux protein RcnA; Provisional	93.9
COG2836	232	Uncharacterized conserved protein [Function unknow	93.81
PRK11469	188	hypothetical protein; Provisional	88.65
COG2215	303	ABC-type uncharacterized transport system, permeas	88.09
TIGR00802	280	nico high-affinity nickel-transporter, HoxN/HupN/N	84.64
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	84.47
COG5486	283	Predicted metal-binding integral membrane protein	84.39
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	81.65
TIGR00704	307	NaPi_cotrn_rel Na/Pi-cotransporter. This model des	80.33
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	80.19

>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation

Probab=100.00  E-value=2.6e-33  Score=256.46  Aligned_cols=207  Identities=41%  Similarity=0.630  Sum_probs=175.2

Q ss_pred             HHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 019423          124 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ---IIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAA  200 (341)
Q Consensus       124 aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~---~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~  200 (341)
                      +|.+|++++++||++|++|++++++.+++++++|++   .+..++.|.+|+.++|..+|..++.+++.+++..+++..+.
T Consensus         1 af~aGll~~~sPC~lp~lp~~l~~~~~~~~~~~~~~~~~~~~~~l~f~~G~~~~~~~lG~~~~~~g~~~~~~~~~~~~i~   80 (211)
T PF02683_consen    1 AFLAGLLSSFSPCVLPVLPLYLSYIAGSGASSRRKGKRVALLLGLAFVLGFALVFALLGLGAGALGSFFGQISPWLYIIA   80 (211)
T ss_pred             ChHHHHHHhcCcHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            488999999999999999999999886533222222   57899999999999999999999999999988788899999


Q ss_pred             HHHHHHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHHHHH
Q 019423          201 SGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLL  280 (341)
Q Consensus       201 GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~lll  280 (341)
                      |++++++|+.+++.++.+.+...+.. .+.+++++++..++|++|+.++++|+||++|++.+++.++++++|+..+..++
T Consensus        81 g~~~i~~Gl~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~gaf~lG~~~~l~~~PC~~p~l~~il~~a~~~~~~~~~~~ll  159 (211)
T PF02683_consen   81 GVLLILFGLSLLGLFEIPFLSRPRLG-LRSKRKSGGGLLGAFLLGLLFGLVWSPCTGPILAAILALAASSGSVLQGLLLL  159 (211)
T ss_pred             HHHHHHHHHHHHHhhcchhhhhhhhh-hhhhcCCCCCcccHHHHHHHHHHHhhhcchHHHHHHHHHHHcCCchHHHHHHH
Confidence            99999999999988774332221111 01112344557899999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHH-HHhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019423          281 LSYTTGYVAPLLLAASFAGALQ-SLLSFRKFSSWINPMSGALLLGGGLYTFL  331 (341)
Q Consensus       281 l~fgLG~~lPLlll~~~~~~l~-~~~~~~k~~~~i~~isGilLI~~Giy~ll  331 (341)
                      ++|++|+++|+++++.+.+..+ ..++.+|+++|+|++.|++++++|+|+++
T Consensus       160 ~~y~lG~~lPll~~~~~~~~~~~~~~~~~~~~~~i~~~~G~lli~~g~~~l~  211 (211)
T PF02683_consen  160 LAYGLGFGLPLLLIGLFSGSLLRRLRKLRRWSRWIKRISGILLIALGLYLLT  211 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999888765 66788899999999999999999999763

DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=100.00  E-value=6e-32  Score=280.69  Aligned_cols=220  Identities=26%  Similarity=0.367  Sum_probs=182.4

Q ss_pred             chhHHHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h
Q 019423          116 LSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI--G  193 (341)
Q Consensus       116 ~~~~~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~--~  193 (341)
                      ..++.++.+|++|++++++||++||+|++.+++.+.+++++|++.+.++++|++|++++|+++|++++.+|..++..  .
T Consensus       164 ~~~~~l~~afl~Glll~l~PCvlP~lpi~~~~~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~~G~~~~~~~q~  243 (571)
T PRK00293        164 SLPWSLLWFFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQH  243 (571)
T ss_pred             cchHHHHHHHHHHHHHhccchhhHhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44578889999999999999999999999999875432245667888999999999999999999999999877643  2


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhccccccc-cchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCC
Q 019423          194 TGLPLAASGLAIVMGLNLLEIIELQLPSFFDN-FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKD  272 (341)
Q Consensus       194 ~~l~~i~GillIl~GL~lLg~~~l~lp~~~~~-~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs  272 (341)
                      .++.++.+++++++|++|+|.+++++|..+++ .++..++.+.++..++|++|++++++++||++|++++++.+++.+++
T Consensus       244 ~~~~~~~~~l~v~lgL~~~G~~~l~lp~~~~~~~~~~~~~~~~~~~~gaf~~G~l~~l~~~PC~~p~L~~~L~~aa~tg~  323 (571)
T PRK00293        244 PYVLIGLSILFVLLALSMFGLFTLQLPSSLQTRLTLLSNRQQGGSLGGVFVMGAISGLICSPCTTAPLSGALLYIAQSGD  323 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHhcceeccCcHHHHHHhhhhhhcccCCchHhHHHHHHHHHHHhCCCchHHHHHHHHHHHccCc
Confidence            35677888999999999999998877765432 22211223446789999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhcccc
Q 019423          273 PLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTT  338 (341)
Q Consensus       273 ~~~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i~~isGilLI~~Giy~ll~~~~p~~  338 (341)
                      +..|++.|++||+|+++|+++++.+.+++  +.+.++|..+++++.|++|+++|+| ++.+++|+.
T Consensus       324 ~~~g~~~l~~~gLG~~~Plll~~~~~~~~--lpk~g~wm~~~k~~~G~~ll~~~~~-ll~~~~~~~  386 (571)
T PRK00293        324 LLLGGLTLYLLALGMGLPLILITTFGNKL--LPKSGPWMNQVKTAFGFVLLALPVF-LLERVLPGV  386 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccCccHHHHHHHHHHHHHHHHHHH-HHHHHhhHH
Confidence            99999999999999999999999887654  2345567777888999999999999 455788764

>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=5e-31  Score=244.15  Aligned_cols=208  Identities=34%  Similarity=0.507  Sum_probs=183.2

Q ss_pred             hHHHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 019423          118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLP  197 (341)
Q Consensus       118 ~~~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~  197 (341)
                      .+.+..+|.+|+++++|||++|++|.++++..+.+ .++|++.+.+++.|.+|+.++|..+|+.+..+++.+...++++.
T Consensus        10 ~~~~~~aflaGlls~lSPCilpllP~~l~~~~~~~-~~~r~~~~~~~l~FvlG~~~vf~~lG~~~~~~~~~~~~~~~~l~   88 (220)
T COG0785          10 TVSILLAFLAGLLSFLSPCVLPLLPAYLSYLAGGS-LGARKSVLLASLLFVLGFATVFVLLGIGASGLGAFLPLNRLYLR   88 (220)
T ss_pred             hhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35588999999999999999999999999987542 23377888999999999999999999999999999988777899


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHH
Q 019423          198 LAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGG  277 (341)
Q Consensus       198 ~i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~  277 (341)
                      ++.|++++++|+.+++..+.+.+....+++.+   .+..+..++|++|+.++++|+||.+|++.+++++++.+++...|.
T Consensus        89 ~i~gi~li~~Gl~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~f~lGl~f~~~wtPC~gPil~sil~laa~~~~~~~g~  165 (220)
T COG0785          89 YIAGILLILLGLLFLGVLRLPLLLRFARFQLK---GKSVTALGAFLLGLLFALGWTPCIGPILGSILALAASTGSVVLGA  165 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhhhc---cCCCcchhHHHHHHHHHHHhccchhHHHHHHHHHHhcCCcHHHHH
Confidence            99999999999999998876555443332211   235678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHH--HHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 019423          278 TLLLSYTTGYVAPLLLAASFAGALQ--SLLSFRKFSSWINPMSGALLLGGGLYT  329 (341)
Q Consensus       278 llll~fgLG~~lPLlll~~~~~~l~--~~~~~~k~~~~i~~isGilLI~~Giy~  329 (341)
                      .+|++|++|.++|+++++.+.++..  +.++++||.++++++.|++++.+|+++
T Consensus       166 ~ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~~~~i~~~~G~lli~~Gv~l  219 (220)
T COG0785         166 LLLAAYALGLALPFLLLALLSGRALKAFSRKLRRHSGAIEIVGGALLILLGLLL  219 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998875  478899999999999999999999985

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.95  E-value=2.8e-27  Score=241.46  Aligned_cols=216  Identities=31%  Similarity=0.490  Sum_probs=178.3

Q ss_pred             hhHHHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh-
Q 019423          117 SFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI-GT-  194 (341)
Q Consensus       117 ~~~~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~-~~-  194 (341)
                      ...+++.+|+.|++-.|+||++||+|+..+.+.++.++.++++.+..+..|..|+.++|+++|+.++..|..++.. |+ 
T Consensus       166 ~~~~ll~afl~GLlL~ftPCVLPmlpl~s~~v~g~~~~~s~~ra~~Ls~~yv~~mALay~~lgl~~~~~gl~~q~qLQ~P  245 (569)
T COG4232         166 LKWSLLLAFLGGLLLNFTPCVLPMLPLLSGIVLGSAKRASKARAFGLSFVYVQGMALAYTLLGLVAAAAGLGWQAQLQQP  245 (569)
T ss_pred             CCHHHHHHHHHHHHHhhccHhhhhHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHccc
Confidence            3455889999999999999999999999988776544455666778888999999999999999999888666532 32 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhccccccc-cchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCCh
Q 019423          195 GLPLAASGLAIVMGLNLLEIIELQLPSFFDN-FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDP  273 (341)
Q Consensus       195 ~l~~i~GillIl~GL~lLg~~~l~lp~~~~~-~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~  273 (341)
                      ++-....+++++++++|+|++++++|...+. .....++++..+..++|.+|++.+++.+||++|.+.++|.|+++++|+
T Consensus       246 ~vl~~la~lf~llALSMfGlFelqlP~s~q~~l~~~S~~~~gG~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Yiaqsg~~  325 (569)
T COG4232         246 WVLGGLAALFVLLALSMFGLFELQLPSSLQTRLTQQSNRASGGSIVGAFFMGALAGLVVSPCTAPPLAGALLYIAQSGNA  325 (569)
T ss_pred             HHHHHHHHHHHHHHHHhhhheeecCcHHHhhHHhhhhcccCCCchHHHHHHHHHHHHhcCcCcchhHHHHHHHHHhcchH
Confidence            4455667788999999999999999987543 232233334445899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhH---HHHHHHHHHHHHHHHHhhhhcccc
Q 019423          274 LIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI---NPMSGALLLGGGLYTFLDRLFPTT  338 (341)
Q Consensus       274 ~~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i---~~isGilLI~~Giy~ll~~~~p~~  338 (341)
                      +.|...+.++|+|+++|+++++++..++     ++|.++|+   |.+.|++|++..+| ++.|++|+.
T Consensus       326 ~~g~~~l~al~LGMg~Plllv~~f~~~~-----LPk~G~WM~~vK~~fGFvlLa~aiw-Ll~~~~~e~  387 (569)
T COG4232         326 LLGGLALYALGLGMGLPLLLIGVFGNRL-----LPKPGPWMNTVKQAFGFVLLATAIW-LLWRVLPEV  387 (569)
T ss_pred             HHHHHHHHHHHHhcccchhhheeccccc-----CCCCCcHHHHHHHHHHHHHHHHHHH-HHHHHhhhh
Confidence            9999999999999999999999888443     56655555   56699999999999 667888874

>COG2836 Uncharacterized conserved protein [Function unknown]

Probab=99.89  E-value=2.3e-21  Score=178.10  Aligned_cols=204  Identities=25%  Similarity=0.325  Sum_probs=155.8

Q ss_pred             HHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhH
Q 019423          120 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ---IGTGL  196 (341)
Q Consensus       120 ~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~---~~~~l  196 (341)
                      +++.++++|+.++ .||..+|-|+..++...+.++++++ -++.++.|++||+++|+++|++.+.+|..+.+   .+.+.
T Consensus         5 ~~l~~~~~g~lg~-gHC~gMCGGi~~afs~~~~~~~~~~-~~~~~~lyNlGRi~SYallG~i~G~lG~~l~~~~~~~~~l   82 (232)
T COG2836           5 SFLGIFLLGLLGG-GHCLGMCGGIVLAFSLLIPSKVSSS-RLKLHLLYNLGRILSYALLGAILGALGVSLGQSAGLRGVL   82 (232)
T ss_pred             hHHHHHHHHHhcC-ccHHHhcchHHHHHHHhccccchHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455888888766 6999999999998876543333332 27889999999999999999999999977654   34567


Q ss_pred             HHHHHHHHHHHHHHHHHH---h--hhhccccccccchhh---hhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHh
Q 019423          197 PLAASGLAIVMGLNLLEI---I--ELQLPSFFDNFDPRA---AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVA  268 (341)
Q Consensus       197 ~~i~GillIl~GL~lLg~---~--~l~lp~~~~~~~~~~---~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa  268 (341)
                      .+++|+++|++|+.++..   .  ..++|...+++.+..   +..+.++.++++++|+++|+  .||.  ++++.+.+|.
T Consensus        83 ~i~ag~~li~lGL~l~~~~~~~~~~~~~p~i~~~~~~~l~~~r~l~~~~~~~~~~lG~~wG~--lPCG--lVYs~l~~A~  158 (232)
T COG2836          83 FIIAGALLIALGLYLLARGGMWSGALKLPFIGGFLWRLLKPIRLLPLKPLPGALFLGMLWGL--LPCG--LVYSALAYAL  158 (232)
T ss_pred             HHHHHHHHHHHHHHHhcccchhhHHhhchhcchHHHHhhhhhhccccCcchHHHHHHHHhcc--cchH--HHHHHHHHHH
Confidence            899999999999999522   2  223443322221111   12345567899999999995  9995  7788899999


Q ss_pred             hcCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 019423          269 TSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRL  334 (341)
Q Consensus       269 ~sgs~~~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i~~isGilLI~~Giy~ll~~~  334 (341)
                      .++|+.+|+++|++||+||..+++..+.+++++.     ...+++.++.+|.+++.+|+|.++.-.
T Consensus       159 ~tgS~~~Gal~mlaFGlGTlP~ll~~G~~s~~~s-----~~~r~~~~rl~~gl~~v~g~~~l~~g~  219 (232)
T COG2836         159 STGSAFEGALVMLAFGLGTLPNLLAMGIFSSKLS-----KSSRKRLNRLSGGLMVVVGLIGLWKGL  219 (232)
T ss_pred             HcCCHHHHHHHHHHHhhcccHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888999888874     234667888888888888888776443

>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region

Probab=99.89  E-value=1e-21  Score=178.49  Aligned_cols=189  Identities=28%  Similarity=0.401  Sum_probs=138.3

Q ss_pred             HHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhHH
Q 019423          124 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIG------TGLP  197 (341)
Q Consensus       124 aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~------~~l~  197 (341)
                      +|++|+++++ ||..+|.|+..++...+   + + +.+ ..+.|++||+++|+++|++++.+|+.+....      ....
T Consensus         2 a~~~Gl~gs~-hC~~mCg~~~~~~~~~~---~-~-~~~-~~l~y~~GRi~sY~llG~l~g~~G~~l~~~~~~~~l~~~~~   74 (199)
T PF13386_consen    2 AFLLGLLGSL-HCIGMCGPIALALSLSQ---P-K-RWL-RHLLYNLGRILSYTLLGALAGLLGSGLSLSGWLPGLRRIIG   74 (199)
T ss_pred             HHHHHHHHhh-hHHHhHHHHHHHHhccC---c-c-cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            7899999999 99999999999985432   2 2 234 5899999999999999999999999876432      2335


Q ss_pred             HHHHHHHHHHHHHHHHHhhh-hccccccccchhhhh-cCC-CChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChh
Q 019423          198 LAASGLAIVMGLNLLEIIEL-QLPSFFDNFDPRAAA-ANF-PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL  274 (341)
Q Consensus       198 ~i~GillIl~GL~lLg~~~l-~lp~~~~~~~~~~~~-~~~-~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~  274 (341)
                      ++.+.+++++|+.++..-+. +++...+...++..+ .++ ++..++|.+|+++|+  .||  |.++.++..++.++|+.
T Consensus        75 ~~~~~~~l~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~l~gl--lPC--g~~y~~l~~A~~s~s~~  150 (199)
T PF13386_consen   75 ILLGLLGLFLGLRLLGGPRLPKLGRLGHGLARRLQPLLRKLKGPWGAFLLGFLNGL--LPC--GPVYFALALAAASGSPL  150 (199)
T ss_pred             HHHHHHHHHHHHHHHhccchhhHHhccHHHHHHhHHHHHhcCCccHHHHHHHHHHH--hHH--HHHHHHHHHHHHcCChH
Confidence            55666666667777632111 011110111111111 122 678999999999997  799  35667778888999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 019423          275 IGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLY  328 (341)
Q Consensus       275 ~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i~~isGilLI~~Giy  328 (341)
                      +|+++|++|++||..|+++++...++++     ++.+++..+++|+++++.|+|
T Consensus       151 ~G~l~m~~FgLGT~p~ll~~~~~~~~l~-----~~~~~~~~r~~g~~~i~~G~~  199 (199)
T PF13386_consen  151 YGALLMLAFGLGTLPALLLAGLLAGKLS-----RRLRRRLLRLAGVLLIILGIY  199 (199)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999888888888777764     234456667999999999987

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional

Probab=99.00  E-value=3.1e-07  Score=88.29  Aligned_cols=218  Identities=17%  Similarity=0.173  Sum_probs=138.9

Q ss_pred             HHHHHHhhccchhHHHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019423          106 NEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFA  185 (341)
Q Consensus       106 ~~~~~~~L~~~~~~~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~l  185 (341)
                      +++++|.   .-|.-+..+|+.|+.-++.|=-.-  .++.+|+..+  +++.++....++.-.++=+.+-.+++.+.-.+
T Consensus         5 ~~~~~~~---~~~~l~~~~f~yG~~HAlgPGHGK--avi~sYlv~~--~~~~~~a~~lgl~~~l~hta~~lv~~~~~~~l   77 (279)
T PRK10019          5 TTLLQQG---NAWFFIPSAILLGALHGLEPGHSK--TMMAAFIIAI--KGTIKQAVMLGLAATISHTAVVWLIAFGGMYL   77 (279)
T ss_pred             HHHHHcc---hHHHHHHHHHHHHHHHhcCCCcch--HHHhhhhhcC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445444   456777789999999999987644  3356777653  34555666667666666655555555544344


Q ss_pred             HHHHHH--hhhhHHHHHHHHHHHHHHHHHHHhhhhc------cc--cccc---------------------------cch
Q 019423          186 GKAYGQ--IGTGLPLAASGLAIVMGLNLLEIIELQL------PS--FFDN---------------------------FDP  228 (341)
Q Consensus       186 G~~l~~--~~~~l~~i~GillIl~GL~lLg~~~l~l------p~--~~~~---------------------------~~~  228 (341)
                      .+.+..  ...++..+.+++++.+|++++-....+.      +.  ..+.                           .++
T Consensus        78 ~~~~~~~~~~~~le~~S~~lii~lGl~ll~r~~r~~~~~~~~~h~~~h~h~h~h~h~~~c~~~~~~~~~~~~gh~h~~~~  157 (279)
T PRK10019         78 SRRFTAQSAEPWLQLISAVIIISTAFWMFWRTWRGERNWLENMHHHDHDHDHDHDHEHHHDHGHHHHHEHGATAEEYQDA  157 (279)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCCCCCCcCccccccccccccccccCCCCH
Confidence            444432  4567889999999999999983311110      00  0000                           000


Q ss_pred             h---------hhhc-CCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHHH
Q 019423          229 R---------AAAA-NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFA  298 (341)
Q Consensus       229 ~---------~~~~-~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~llll~fgLG~~lPLlll~~~~  298 (341)
                      .         .+.. +..+..+.+.+|+.-|+  .||++.++.  |..+.+.+.+..|+++.++|++|+++-+..++...
T Consensus       158 ~~~~~a~~~r~~~~~~~~~~~~~l~igl~~Gl--~PCpgAl~V--LL~a~~lg~~~~Gi~~vlafslGtaltm~~vgll~  233 (279)
T PRK10019        158 HERAHANDIKRRFDGREVTNGQILLFGLTGGL--IPCPAAITV--LLICIQLKALTLGATLVLSFSIGLALTLVTVGVGA  233 (279)
T ss_pred             HHhhccchhhhhhcccccccchhhHHHHHhcc--CCCHHHHHH--HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0         0000 01122334578888886  899877643  44455678999999999999999999999988776


Q ss_pred             H-HHH-HHhhhhhhhhhHH---HHHHHHHHHHHHHHHhhhh
Q 019423          299 G-ALQ-SLLSFRKFSSWIN---PMSGALLLGGGLYTFLDRL  334 (341)
Q Consensus       299 ~-~l~-~~~~~~k~~~~i~---~isGilLI~~Giy~ll~~~  334 (341)
                      . ..+ ..++..+..++++   .++|++.+++|+|+.++.+
T Consensus       234 ~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~~~~~~~  274 (279)
T PRK10019        234 AISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVYMGVHGF  274 (279)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 232 2233344455555   8999999999999988655

>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=5.5e-08  Score=90.58  Aligned_cols=158  Identities=22%  Similarity=0.179  Sum_probs=115.8

Q ss_pred             hhHHHHHHHHHHhhhhchhhhhchHHhhhhhhhHHHHhcchhhhhhhhHhhhhhhhhHHHHHH--hhcc-chhHHHHHHH
Q 019423           49 TNTFLSTLTVANLAAIGNAKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLG--QLSA-LSFTSLAVIF  125 (341)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~g~~~~~~~~~--~L~~-~~~~~l~~af  125 (341)
                      .+++.-.+.++..-...-.-+..+++++..|+..+..+.|.+.+.+|  +-+++...-+..++  +.+- ....+..-.|
T Consensus        53 ~~~l~FvlG~~~vf~~lG~~~~~~~~~~~~~~~~l~~i~gi~li~~G--l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f  130 (220)
T COG0785          53 LASLLFVLGFATVFVLLGIGASGLGAFLPLNRLYLRYIAGILLILLG--LLFLGVLRLPLLLRFARFQLKGKSVTALGAF  130 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhhhhhcchhhhccCCCcchhHH
Confidence            34444444444444455566778899999999988999999999999  55555443222222  2111 1145567788


Q ss_pred             HHHHhhCC--CCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhHHHH
Q 019423          126 GAGLVTSL--SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGK----AYGQIGTGLPLA  199 (341)
Q Consensus       126 laGll~sl--sPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~----~l~~~~~~l~~i  199 (341)
                      ..|+..++  +||+.|.+..+++....   +++-.++.....+|++|..++|.+++.+.+.+.+    .+.++.+.+.++
T Consensus       131 ~lGl~f~~~wtPC~gPil~sil~laa~---~~~~~~g~~ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~~~~i~~~  207 (220)
T COG0785         131 LLGLLFALGWTPCIGPILGSILALAAS---TGSVVLGALLLAAYALGLALPFLLLALLSGRALKAFSRKLRRHSGAIEIV  207 (220)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88988877  89999999999888663   2334456777889999999999999999998776    355677788999


Q ss_pred             HHHHHHHHHHHH
Q 019423          200 ASGLAIVMGLNL  211 (341)
Q Consensus       200 ~GillIl~GL~l  211 (341)
                      .|++++.+|+.+
T Consensus       208 ~G~lli~~Gv~l  219 (220)
T COG0785         208 GGALLILLGLLL  219 (220)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999875

>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation

Probab=98.78  E-value=1.7e-07  Score=85.86  Aligned_cols=141  Identities=24%  Similarity=0.210  Sum_probs=101.4

Q ss_pred             hhhhchHHhhhhhhhHHHHhcchhhhhhhhHhhhhhhhhHHHHHH-hh----ccchhHHHHHHHHHHHhhCC--CCCccc
Q 019423           67 AKALTMENVLEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLG-QL----SALSFTSLAVIFGAGLVTSL--SPCTLS  139 (341)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~g~~~~~~~~~-~L----~~~~~~~l~~aflaGll~sl--sPCvlp  139 (341)
                      .-+...++++++....+..+.|.+.+.++  +..++....+..++ +.    +.+....+..+|+.|+..++  +||+.|
T Consensus        60 ~~~~~~g~~~~~~~~~~~~i~g~~~i~~G--l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~gaf~lG~~~~l~~~PC~~p  137 (211)
T PF02683_consen   60 LGAGALGSFFGQISPWLYIIAGVLLILFG--LSLLGLFEIPFLSRPRLGLRSKRKSGGGLLGAFLLGLLFGLVWSPCTGP  137 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcchhhhhhhhhhhhhcCCCCCcccHHHHHHHHHHHhhhcchH
Confidence            34567788998888888889999999999  66665443222221 11    11122334567777777655  799999


Q ss_pred             hHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHH
Q 019423          140 VLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGK---AYGQIGTGLPLAASGLAIVMGLNLL  212 (341)
Q Consensus       140 ~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~---~l~~~~~~l~~i~GillIl~GL~lL  212 (341)
                      ++..++++...+   ++..+....-..|.+|+.+++.+++.....+.+   .+.++.++++++.|++++.+|+.++
T Consensus       138 ~l~~il~~a~~~---~~~~~~~~ll~~y~lG~~lPll~~~~~~~~~~~~~~~~~~~~~~i~~~~G~lli~~g~~~l  210 (211)
T PF02683_consen  138 ILAAILALAASS---GSVLQGLLLLLAYGLGFGLPLLLIGLFSGSLLRRLRKLRRWSRWIKRISGILLIALGLYLL  210 (211)
T ss_pred             HHHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999888887642   333455666789999999999999998887663   3455667789999999999999875

DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane

>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed

Probab=98.54  E-value=1.6e-05  Score=73.24  Aligned_cols=193  Identities=19%  Similarity=0.164  Sum_probs=119.6

Q ss_pred             HHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhhHHH
Q 019423          127 AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI--------GTGLPL  198 (341)
Q Consensus       127 aGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~--------~~~l~~  198 (341)
                      .++..+++|=.+...   +..+.+   .+    ..++.++|.+|..+.|...|+..-...+.....        ..++.+
T Consensus         4 LAl~~a~sP~~i~~~---vlll~~---~r----~~~~~~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   73 (214)
T PF11139_consen    4 LALVDALSPLPIVIA---VLLLSR---PR----PRRNLLAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQL   73 (214)
T ss_pred             HHHHHHhChHHHHHH---HHHhcC---CC----ccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHH
Confidence            456667777653332   222221   12    234578999999999999998887666654311        234566


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHHH
Q 019423          199 AASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGT  278 (341)
Q Consensus       199 i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~l  278 (341)
                      +.|++++++|......-+  -+....+..+...+.+..+..+++.+|+..+++..+...|++.++......+-++..-..
T Consensus        74 ~lGv~ll~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~laa~~~I~~~~~~~~~~~~  151 (214)
T PF11139_consen   74 VLGVLLLLLAVRVWRRRP--RPDPPSRPPRWLARLDSASPGGAFWLGFVLGLANPKTMLPYLAAIAIIAASGLSPGTQVV  151 (214)
T ss_pred             HHHHHHHHHHHHHhhccc--ccCCCCCchhhhhhhhcCCchhHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHH
Confidence            777777777776652210  000000011111122345567789999999998888877777666666666678888899


Q ss_pred             HHHHHHhhHHHHHHHHHHH----HHHHHHHhhhhhhhhhH----HHHHHHHHHHHHHHHHhhh
Q 019423          279 LLLSYTTGYVAPLLLAASF----AGALQSLLSFRKFSSWI----NPMSGALLLGGGLYTFLDR  333 (341)
Q Consensus       279 lll~fgLG~~lPLlll~~~----~~~l~~~~~~~k~~~~i----~~isGilLI~~Giy~ll~~  333 (341)
                      .+..|.+-+..|..+....    ..+.+  .+.+|.++|+    +.+.++++.+.|+|++.+.
T Consensus       152 ~l~~y~~i~~~~~~~pll~~~~~~~r~~--~~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~~G  212 (214)
T PF11139_consen  152 ALVVYCLIASLPALLPLLAYLVAPERAE--PWLERLRSWLRRHSRQILAVILLIVGALLLGDG  212 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHhh
Confidence            9999999998887653322    22222  2233444444    5568889999999977653

Currently no function for this family is known.

>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=98.36  E-value=0.00073  Score=65.46  Aligned_cols=207  Identities=23%  Similarity=0.245  Sum_probs=122.7

Q ss_pred             hhHHHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HH--HHH
Q 019423          117 SFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIA--FSLGLATTLALLGVGASFAG-KA--YGQ  191 (341)
Q Consensus       117 ~~~~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~--f~lG~~lty~lLG~~~~~lG-~~--l~~  191 (341)
                      .|..+..+|+-|.+-++.|=-.=.+  ..+|+.+.+  .+-++....+++  ..=|. +...+++++.+... ..  +..
T Consensus        54 ~w~li~~SflyGvlHAlgPGHgKav--iasylia~~--~~lk~~ilLsf~~sllqG~-~Av~l~~~~~~v~~~~s~~~~~  128 (303)
T COG2215          54 GWTLIPLSFLYGVLHALGPGHGKAV--IATYLIAHK--ATLKRAILLSFLASLLQGL-TAVVLLLAFLGVLRLSSITFAL  128 (303)
T ss_pred             HHHHHHHHHHHHHHhccCCCcchHH--HHHHHHhcc--cchhHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHhhhhHHhh
Confidence            4677778999999999998865432  456766532  222233322222  11121 23333333333222 22  334


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHH-hh-h--hccc--ccc---------------------ccchhhhhcCCCChHHHHHH
Q 019423          192 IGTGLPLAASGLAIVMGLNLLEI-IE-L--QLPS--FFD---------------------NFDPRAAAANFPSSVQAYLA  244 (341)
Q Consensus       192 ~~~~l~~i~GillIl~GL~lLg~-~~-l--~lp~--~~~---------------------~~~~~~~~~~~~~~~~afll  244 (341)
                      ...++.++..++++.+|+.++-. ++ +  +-|+  ...                     ..+++. ..+.......+..
T Consensus       129 s~~~lE~~S~~Ll~~~G~w~~~r~lr~l~~~~~~~~~~~~~~~~~~~h~H~~~~~Cgh~H~~d~~~-~~~~~~~~~~~~~  207 (303)
T COG2215         129 SEPWLELISFLLLILLGLWLLWRTLRRLRHRHPKHPHFAAHPHPDHDHDHHYQCACGHAHAPDPKR-LGQAVDWKQQWLF  207 (303)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccCCCcccCCccccccccccccCCChHH-hcccccHHHHHHH
Confidence            45677889999999999998822 11 1  1021  000                     011111 1233445567888


Q ss_pred             hHHhhhccCCCchHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-Hhh-------hhhhhhhHHH
Q 019423          245 GLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQS-LLS-------FRKFSSWINP  316 (341)
Q Consensus       245 Gll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~llll~fgLG~~lPLlll~~~~~~l~~-~~~-------~~k~~~~i~~  316 (341)
                      |+..|+  .||.+.+.  +|..+.+.+-...|++..+++++|+++++-..+...-..|. ..+       -+|+...+..
T Consensus       208 ~l~~GL--rPCpgAi~--VLlfal~~gl~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~~~~g~~~~~~~~~~~~~l  283 (303)
T COG2215         208 GLTGGL--RPCPGAIF--VLLFALSLGLYTLGILSVLAMSIGTALTVSALALLAVTAKNTAVRLSGFRTLAKRISYIVSL  283 (303)
T ss_pred             HHHhcC--ccCcHHHH--HHHHHHHhchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            898887  99987774  35556667889999999999999999998777765544331 111       1233445666


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 019423          317 MSGALLLGGGLYTFLDR  333 (341)
Q Consensus       317 isGilLI~~Giy~ll~~  333 (341)
                      +.|.+++.+|+..++..
T Consensus       284 ~~gli~l~~g~~~l~~~  300 (303)
T COG2215         284 LGGLIGLYFGLHLLLGS  300 (303)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            77888888888766543

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=98.07  E-value=0.00083  Score=60.02  Aligned_cols=164  Identities=21%  Similarity=0.219  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCC
Q 019423          160 IIGDSIAFSLGLATTLALLGVGASFAGKAY----GQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANF  235 (341)
Q Consensus       160 ~~~~~l~f~lG~~lty~lLG~~~~~lG~~l----~~~~~~l~~i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~  235 (341)
                      +++.++...+|..+...+...++......+    .....++.++.+..++.+|..++..-+    +...  + .....+.
T Consensus        22 G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~----~~~~--~-~~~~~~~   94 (191)
T PF01810_consen   22 GFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKF----SSKS--S-TQSEAKK   94 (191)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhccc----Ccch--h-hhhhhcc
Confidence            455577788888887777776655443333    234456788888889999998873211    0000  0 0000113


Q ss_pred             CChHHHHHHhHHhhhccCCCchHHHHHHHHHHhh-cCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 019423          236 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT-SKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI  314 (341)
Q Consensus       236 ~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~-sgs~~~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i  314 (341)
                      .+....|..|+...+ .-|=+-+.+.++...... +.+...........-++........+...++.++..+.++.+ ++
T Consensus        95 ~~~~~~f~~g~~~~~-~NPk~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~i  172 (191)
T PF01810_consen   95 QSKSKSFLTGFLLNL-LNPKAILFWLAVFPQFISPEYSSTQFLVFILGIFLGSLLWFLLLALLGSRLRRKFSSRRIR-WI  172 (191)
T ss_pred             ccHHHHHHHHHHHHH-HhHHHHHHHHHhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HH
Confidence            456778888888887 455544444444443333 223333344444555565566666666666654332333344 99


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 019423          315 NPMSGALLLGGGLYTFLD  332 (341)
Q Consensus       315 ~~isGilLI~~Giy~ll~  332 (341)
                      ++++|++++.+|++++++
T Consensus       173 ~~~~g~~li~~av~l~~~  190 (191)
T PF01810_consen  173 NRISGLLLIGFAVYLLYS  190 (191)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999999999998875

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=98.06  E-value=0.0019  Score=58.76  Aligned_cols=191  Identities=18%  Similarity=0.097  Sum_probs=99.2

Q ss_pred             HHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HhhhhHHH
Q 019423          123 VIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAG-KAYG---QIGTGLPL  198 (341)
Q Consensus       123 ~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG-~~l~---~~~~~l~~  198 (341)
                      ..+...+...++|  +|-.-.++....        +++.+.+..+.+|..+.+.+.-.+..... ..+.   .....+++
T Consensus         8 ~~~~~~~~~~~sP--GP~~~~v~~~~~--------~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~   77 (205)
T PRK10520          8 AYLLTSIILSLSP--GSGAINTMSTSI--------SHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKW   77 (205)
T ss_pred             HHHHHHHHHhcCC--chhHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3444566666777  454433333321        13455677788888887777665543322 2222   33445677


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChh-HH-
Q 019423          199 AASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL-IG-  276 (341)
Q Consensus       199 i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~-~G-  276 (341)
                      +.+..++.+|..++.-   + |....  +. .  .+.++..+.|.-|+...+ .-|=+-..+.+++..-...+++. .. 
T Consensus        78 ~Ga~YL~~lg~~~~~s---~-~~~~~--~~-~--~~~~~~~~~f~~g~~~~l-~NPKailf~~a~~p~f~~~~~~~~~~~  147 (205)
T PRK10520         78 AGAAYLIWLGIQQWRA---A-GAIDL--HT-L--ASTQSRRRLFKRAVFVNL-TNPKSIVFLAALFPQFIMPQQPQLMQY  147 (205)
T ss_pred             HHHHHHHHHHHHHHhC---C-Ccccc--cc-c--cCCccHHHHHHHHHHHHh-hCcHHHHHHHHHcccccCCCCchHHHH
Confidence            7888888999988732   1 11100  00 0  011222356778887776 45554333334443322222222 22 


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019423          277 GTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDR  333 (341)
Q Consensus       277 ~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i~~isGilLI~~Giy~ll~~  333 (341)
                      ..+...+.+-...-....+.+.++.++..+.+|+.+++++++|.+++.+|+++.++|
T Consensus       148 ~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~g~~li~~~~~l~~~~  204 (205)
T PRK10520        148 LVLGVTTVVVDIIVMIGYATLAQRIARWIKGPKQMKALNKIFGSLFMLVGALLASAR  204 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            212222221111122223334445544445567778999999999999999987654

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=97.89  E-value=0.00018  Score=75.73  Aligned_cols=138  Identities=20%  Similarity=0.124  Sum_probs=86.4

Q ss_pred             chHHhhhhh--hhHHHHhcchhhhhhhhHhhhhhhhh---HHHHHHhhcc----chhHHHHHHHHHHHhhCC--CCCccc
Q 019423           71 TMENVLEGA--ASVYTMADGSLGDMFGGFLYSAGQQA---NEAVLGQLSA----LSFTSLAVIFGAGLVTSL--SPCTLS  139 (341)
Q Consensus        71 ~~~~~~~~~--~~~~~~~~g~~~~~~~~~l~~~g~~~---~~~~~~~L~~----~~~~~l~~aflaGll~sl--sPCvlp  139 (341)
                      -+|..|...  +.++....+.+.+.++  +.-.|.+.   ....++++..    ..--.+..+|+.|+++++  +||+.|
T Consensus       232 ~~G~~~~~~~q~~~~~~~~~~l~v~lg--L~~~G~~~l~lp~~~~~~~~~~~~~~~~~~~~gaf~~G~l~~l~~~PC~~p  309 (571)
T PRK00293        232 AAGLQFQAALQHPYVLIGLSILFVLLA--LSMFGLFTLQLPSSLQTRLTLLSNRQQGGSLGGVFVMGAISGLICSPCTTA  309 (571)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHhcceeccCcHHHHHHhhhhhhcccCCchHhHHHHHHHHHHHhCCCchH
Confidence            356656432  3455566677777777  43333221   1111222110    111235678888988877  499999


Q ss_pred             hHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 019423          140 VLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLE  213 (341)
Q Consensus       140 ~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~GillIl~GL~lLg  213 (341)
                      .+..++.++..   ..+...+...-.+|.+|..++|.++|...+.+....+.+.+.+..+.|++++.+|+.++.
T Consensus       310 ~L~~~L~~aa~---tg~~~~g~~~l~~~gLG~~~Plll~~~~~~~~lpk~g~wm~~~k~~~G~~ll~~~~~ll~  380 (571)
T PRK00293        310 PLSGALLYIAQ---SGDLLLGGLTLYLLALGMGLPLILITTFGNKLLPKSGPWMNQVKTAFGFVLLALPVFLLE  380 (571)
T ss_pred             HHHHHHHHHHc---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888888653   234444555668899999999999998754332222233345678999999999999884

>PRK09304 arginine exporter protein; Provisional

Probab=97.87  E-value=0.0084  Score=54.89  Aligned_cols=195  Identities=12%  Similarity=-0.019  Sum_probs=96.5

Q ss_pred             HHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhH
Q 019423          121 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASF----AGKAYGQIGTGL  196 (341)
Q Consensus       121 l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~----lG~~l~~~~~~l  196 (341)
                      ++..+..|+..+++|=  |..-.++..-.      +++.    ++....|..+...+...+...    +-+........+
T Consensus         5 ~~~g~~~g~~~~~tPG--P~~~~v~~~~~------~~~~----~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l   72 (207)
T PRK09304          5 YFQGFALGAAMILPLG--PQNAFVMNQGI------RRQY----HLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALV   72 (207)
T ss_pred             HHHHHHHHHHHHhccC--hHHHHHHHHHH------cccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4457888888888763  33333332211      1222    445566666555555443322    222223334556


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHH
Q 019423          197 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIG  276 (341)
Q Consensus       197 ~~i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G  276 (341)
                      .++.+.-++.+|..++.--+ + ++.  ..+.+.  .+.++..+.|.-|+...+ .-|=+--.+.++......+.++...
T Consensus        73 ~~~Ga~YLlyLg~~~~rs~~-~-~~~--~~~~~~--~~~~~~~~~f~~G~~~~l-~NPKa~lf~~~~~~~~~~~~~~~~~  145 (207)
T PRK09304         73 TWGGVAFLLWYGFGAFKTAM-S-SNI--ELASAE--VMKQGRWKIIATMLAVTW-LNPHVYLDTFVVLGSLGGQLDVEPK  145 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-c-ccc--cccccc--ccCccHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHhccCcchh
Confidence            77788888889998873210 0 100  000000  111233467888888876 3555421111222211111122111


Q ss_pred             H-HHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhc
Q 019423          277 G-TLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLF  335 (341)
Q Consensus       277 ~-llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i~~isGilLI~~Giy~ll~~~~  335 (341)
                      . ..+... .....-....+....+.++..+.+|+.+|+++++|.+++.+|+++..+++.
T Consensus       146 ~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~in~~~g~~l~~~~~~l~~~~~~  204 (207)
T PRK09304        146 RWFALGTI-SASFLWFFGLALLAAWLAPRLRTAKAQRIINLFVGCVMWFIALQLARQGIA  204 (207)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            1 111111 111122223334444444444445788899999999999999998877654

>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]

Probab=97.83  E-value=0.012  Score=54.18  Aligned_cols=195  Identities=23%  Similarity=0.181  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhh
Q 019423          119 TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGA----SFAGKAYGQIGT  194 (341)
Q Consensus       119 ~~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~----~~lG~~l~~~~~  194 (341)
                      ..++..+.+.+....+|  +|..-.+++....    +    ++++++...+|..+...+.-.++    +.+-.......+
T Consensus         4 ~~~l~~~~~~~~~~~~P--GP~~~~v~~~~~~----~----G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~   73 (208)
T COG1280           4 TNLLAFLLAALVLAATP--GPDNLLVLARSLS----R----GRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFT   73 (208)
T ss_pred             HHHHHHHHHHHHHhcCC--CccHHHHHHHHHH----h----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            34455566666667664  5655445444321    2    23344555555544333332222    222233333445


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChh
Q 019423          195 GLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL  274 (341)
Q Consensus       195 ~l~~i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~  274 (341)
                      .+.++.+.-++.+|..++.--+   +..  +.+. ..+.+..+ .+.|.-|++..+ .-|=.--.+.+++......+.+.
T Consensus        74 ~lk~~GaaYL~ylg~~~~ra~~---~~~--~~~~-~~~~~~~~-~~~f~~G~~~~l-~NPK~~lf~la~~pqfv~~~~~~  145 (208)
T COG1280          74 VLKLAGAAYLLYLGWKALRAGG---AAL--AEEA-AGAPSSSR-RKAFRRGLLVNL-LNPKAILFFLAFLPQFVDPGAGL  145 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc---ccc--cccc-cccccchh-HHHHHHHHHHHh-hCcHHHHHHHHHHhhhcCCCCch
Confidence            6788888888999998873211   000  0000 00001111 367889998887 46665444556666554433332


Q ss_pred             HHHHHHHHHHhhHH---HHHH-HHHHHHHHHHH-HhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019423          275 IGGTLLLSYTTGYV---APLL-LAASFAGALQS-LLSFRKFSSWINPMSGALLLGGGLYTFLDR  333 (341)
Q Consensus       275 ~G~llll~fgLG~~---lPLl-ll~~~~~~l~~-~~~~~k~~~~i~~isGilLI~~Giy~ll~~  333 (341)
                      . ...++..++.+.   .+.. ..+......++ .++ ++..+|+++..|.+++..|+++.+.+
T Consensus       146 ~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~G~~li~~g~~l~~~~  207 (208)
T COG1280         146 V-LLQALILGLVFILVGFVVLALYALLAARLRRLLRR-PRASRIINRLFGVLLIGFGVKLALSR  207 (208)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            1 122222222221   2222 12222223333 334 67999999999999999999987754

>PRK10229 threonine efflux system; Provisional

Probab=97.77  E-value=0.015  Score=52.84  Aligned_cols=192  Identities=15%  Similarity=0.140  Sum_probs=95.9

Q ss_pred             HHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HhhhhHHH
Q 019423          123 VIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFA-GKAYG---QIGTGLPL  198 (341)
Q Consensus       123 ~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~l-G~~l~---~~~~~l~~  198 (341)
                      ..++.++...++|  +|..-.++....    +    ++.+.+....+|......+...++... +..+.   ...+.+.+
T Consensus         7 ~~~~~~~~~~~sP--GP~~~~vi~~~~----~----~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~   76 (206)
T PRK10229          7 TVAMVHIVALMSP--GPDFFFVSQTAV----S----RSRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMV   76 (206)
T ss_pred             HHHHHHHHHhcCC--CchhHHHHHHHH----h----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            4456677777777  454433333211    1    234456677778777766655443322 22222   33455677


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHHH
Q 019423          199 AASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGT  278 (341)
Q Consensus       199 i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~l  278 (341)
                      +.+..++.+|..++.--+ + + . +..++.. ..+.++....|.-|++..+ .-|=+-..+.+++..-........ . 
T Consensus        77 ~Ga~yLlylg~~~~~~~~-~-~-~-~~~~~~~-~~~~~~~~~~f~~G~l~~l-~NPka~lf~~ai~~~f~~~~~~~~-~-  148 (206)
T PRK10229         77 GGGLYLCWMGYQMLRGAL-K-K-E-DVAAEEP-QVELAKSGRSFLKGLLTNL-SNPKAIIYFGSVFSLFVGDNVGAG-A-  148 (206)
T ss_pred             HHHHHHHHHHHHHHHhcc-c-c-c-ccccccc-cccCccHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHcCCCCcHH-H-
Confidence            777788889988873210 0 0 0 0000000 0011233456888988887 466654444454443322211111 1 


Q ss_pred             HHHHHHhhHHH----HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 019423          279 LLLSYTTGYVA----PLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDR  333 (341)
Q Consensus       279 lll~fgLG~~l----PLlll~~~~~~l~~~~~~~k~~~~i~~isGilLI~~Giy~ll~~  333 (341)
                       ...+..+..+    -....+.........+..+|+.+|+++++|++++.+|++++++|
T Consensus       149 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~g~~li~~~i~l~~~~  206 (206)
T PRK10229        149 -RWGLFALIIVETLAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIISR  206 (206)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             1222222211    11112221111111122347788999999999999999987654

>PRK10958 leucine export protein LeuE; Provisional

Probab=97.73  E-value=0.021  Score=52.59  Aligned_cols=184  Identities=14%  Similarity=0.070  Sum_probs=87.9

Q ss_pred             HhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHHHH
Q 019423          129 LVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGAS----FAGKAYGQIGTGLPLAASGLA  204 (341)
Q Consensus       129 ll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~----~lG~~l~~~~~~l~~i~Gill  204 (341)
                      ++..++|  +|..-.++....    ++.+    ++++.+.+|..+.+.+...+..    .+.+......+.++++.+..+
T Consensus        18 ~~~~~sP--GP~~~~v~~~~~----~~G~----r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL   87 (212)
T PRK10958         18 IFIVLLP--GPNSLYVLSTAA----RRGV----KAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYL   87 (212)
T ss_pred             HHHhcCC--chHHHHHHHHHH----hhCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3345677  666655544422    1223    3455666676666665554443    222333334556788888888


Q ss_pred             HHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhc-CC-hhHHH-HHHH
Q 019423          205 IVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS-KD-PLIGG-TLLL  281 (341)
Q Consensus       205 Il~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~s-gs-~~~G~-llll  281 (341)
                      +.+|..++.-   +........+     .+.++..+.|.-|+...+ .-|=+--.+.++...-... .+ ..... .+..
T Consensus        88 ~~la~~~~~~---~~~~~~~~~~-----~~~~~~~~~f~~g~~~~l-~NPKa~lf~~a~~~~fi~~~~~~~~~~~~~l~~  158 (212)
T PRK10958         88 LYLGVKMLRA---ALRRWRRRAA-----SAAPPYGAPFRRALILSL-TNPKAILFFVSFFVQFVDPNYAHPALSFLILAT  158 (212)
T ss_pred             HHHHHHHHHh---hccccccccc-----ccCcchhHHHHHHHHHHh-hChHHHHHHHHHHhcccCCCCcchHHHHHHHHH
Confidence            8999887732   1100000000     011122346788877775 3443321222333222121 11 11111 1111


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019423          282 SYTTGYVAPLLLAASFAGALQS-LLSFRKFSSWINPMSGALLLGGGLYTFL  331 (341)
Q Consensus       282 ~fgLG~~lPLlll~~~~~~l~~-~~~~~k~~~~i~~isGilLI~~Giy~ll  331 (341)
                      .+.+....-....+....++++ .++.+|+.+|++++.|++++.+|+++..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~l~~~~i~l~~  209 (212)
T PRK10958        159 ILQLVSFCYLSFLIFSGARLAAYFRRRKKLAAGGNSLVGLLFVGFAAKLAT  209 (212)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1211111111122223333432 2334567789999999999999998754

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=97.52  E-value=0.026  Score=50.26  Aligned_cols=163  Identities=15%  Similarity=0.135  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCC
Q 019423          160 IIGDSIAFSLGLATTLALLGVGASF-AGKAYG---QIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANF  235 (341)
Q Consensus       160 ~~~~~l~f~lG~~lty~lLG~~~~~-lG~~l~---~~~~~l~~i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~  235 (341)
                      +.+.++.+.+|..+.+.+.-.++.. ++..+.   .....+.++.+..++.+|..++.--   .+.. +..+++. ..+.
T Consensus        17 G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~~---~~~~-~~~~~~~-~~~~   91 (185)
T TIGR00949        17 GRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRKK---SKKQ-SPAAQVE-LAEQ   91 (185)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcc---cccc-ccccccc-cccC
Confidence            4556777888888777776655543 233333   3345678888888899999877310   0000 0000000 0111


Q ss_pred             CChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCCh-hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 019423          236 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDP-LIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI  314 (341)
Q Consensus       236 ~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~-~~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i  314 (341)
                      ++..+.|.-|+...+ .-|=+-..+.+++..-...+.. ..-..+.....+....-....+....+.++.++.+++.+++
T Consensus        92 ~~~~~~f~~g~~~~~-~NPk~ilf~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  170 (185)
T TIGR00949        92 TTWKKSFRRGLLTNL-SNPKAVLFFISIFSQFINPNTPTWQLIVLGLTIIVETILWFYVLSLIFSRPAVRRKYSKQQKWI  170 (185)
T ss_pred             ccHHHHHHHHHHHhc-cChHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence            233457888888876 3554322333333322221111 11112222222222222233333344443333456788999


Q ss_pred             HHHHHHHHHHHHHH
Q 019423          315 NPMSGALLLGGGLY  328 (341)
Q Consensus       315 ~~isGilLI~~Giy  328 (341)
                      ++++|++++.+|+.
T Consensus       171 n~~~g~~l~~~~v~  184 (185)
T TIGR00949       171 DGITGALFVGFGIR  184 (185)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998874

>PRK10323 cysteine/O-acetylserine exporter; Provisional

Probab=97.31  E-value=0.12  Score=46.79  Aligned_cols=176  Identities=12%  Similarity=0.032  Sum_probs=83.3

Q ss_pred             HHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HhhhhHHHHHHHH
Q 019423          128 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAG-KAYG---QIGTGLPLAASGL  203 (341)
Q Consensus       128 Gll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG-~~l~---~~~~~l~~i~Gil  203 (341)
                      .+...++|  +|-.-.++..-.    +    ++.++++...+|..+.+.+...+..... ....   ...+.++++.+.-
T Consensus        13 ~~~~~~sP--GP~~~~v~~~~~----~----~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~Y   82 (195)
T PRK10323         13 TLITAMTP--GPNNILALSSAT----S----HGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAY   82 (195)
T ss_pred             HHHHhCCC--ChHHHHHHHHHH----H----hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455677  555444443322    1    2233455666777766666644433222 2222   2334567777777


Q ss_pred             HHHHHHHHHHHhhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChh-HHH-HHHH
Q 019423          204 AIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL-IGG-TLLL  281 (341)
Q Consensus       204 lIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~-~G~-llll  281 (341)
                      ++.+|..++.-   + +.  ++ +.    .+++   ..|.-|+...+ .-|=+-..+.+++..-...+.+. .-. .+..
T Consensus        83 LlyLg~~~~~s---~-~~--~~-~~----~~~~---~~f~~G~~~~l-~NPKa~lf~~a~~~~f~~~~~~~~~~~~~l~~  147 (195)
T PRK10323         83 IVWLAWKIATS---P-TK--ED-GL----QAKP---ISFWASFALQF-VNVKIILYGITALSTFVLPQTQALSWVVGVSV  147 (195)
T ss_pred             HHHHHHHHHhc---c-Cc--cc-cC----CCCC---hhHHHHHHHHh-HCHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence            88899887621   1 11  00 00    0111   24667777765 34444223334444333221221 111 1111


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 019423          282 SYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTF  330 (341)
Q Consensus       282 ~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i~~isGilLI~~Giy~l  330 (341)
                      .+.+....-....+.....+++  ..+|+++|+++++|.+++.+|+++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~g~~l~~~a~~l~  194 (195)
T PRK10323        148 LLAMIGTFGNVCWALAGHLFQR--LFRQYGRQLNIVLALLLVYCAVRIF  194 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1111111111122222233332  2346778999999999999999765

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=96.98  E-value=0.073  Score=49.07  Aligned_cols=79  Identities=18%  Similarity=0.287  Sum_probs=53.5

Q ss_pred             HHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 019423          128 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVM  207 (341)
Q Consensus       128 Gll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~GillIl~  207 (341)
                      .+..-++|  ...+|.+++...+. +.++|++..++...+.....+.|...|-..   -+.++-..+.+++.+|+++.++
T Consensus        10 ~lf~iinP--~g~ip~f~~lt~~~-~~~~r~~ia~~a~~~a~~ill~f~~~G~~i---L~~fgIsl~af~IaGGiiL~~i   83 (203)
T PF01914_consen   10 TLFAIINP--IGNIPIFLSLTKGM-SPKERRRIARRASIIAFIILLIFAFFGQLI---LNFFGISLPAFRIAGGIILFLI   83 (203)
T ss_pred             HHHHHHhH--HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCHHHHHHHHHHHHHHH
Confidence            44444455  34678888776543 345666777788788887777777777332   2344433456789999999999


Q ss_pred             HHHHH
Q 019423          208 GLNLL  212 (341)
Q Consensus       208 GL~lL  212 (341)
                      |+.|+
T Consensus        84 a~~ml   88 (203)
T PF01914_consen   84 ALEML   88 (203)
T ss_pred             HHHHh
Confidence            99998

These proteins may be transporters. ; GO: 0016021 integral to membrane

>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type

Probab=96.81  E-value=0.065  Score=50.32  Aligned_cols=153  Identities=12%  Similarity=0.053  Sum_probs=72.3

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhcC
Q 019423          155 KSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAAN  234 (341)
Q Consensus       155 ~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~  234 (341)
                      -+||+.......|.++..+...+.+-.--..-+.+.++..+...+.+.+++..|+.....++.+              ++
T Consensus        29 ls~k~~~~i~~~Y~~l~~~l~~i~~~~~~~~~~~i~~yg~~~h~imal~li~~Gi~ti~~W~~~--------------~~   94 (224)
T PF09930_consen   29 LSRKEIALIALGYGLLFLLLGYIASPINMEIYEFILRYGMVIHLIMALLLIYAGIYTIKKWKKS--------------GK   94 (224)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccc--------------CC
Confidence            3566665666666665554433333332222223334445567788888888888877433210              00


Q ss_pred             CCChHHHHHHhHHhhhccCCCchH-HHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 019423          235 FPSSVQAYLAGLTFALAASPCSTP-VLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSW  313 (341)
Q Consensus       235 ~~~~~~afllGll~gL~~~PC~gP-il~~iL~~aa~sgs~~~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~  313 (341)
                      ..+.. .+    ..-...|||+.. +.++....+...+....      ..|+..++-+++........-     |+.+..
T Consensus        95 ~~s~~-t~----lal~~PCPvCl~Ai~~S~~l~a~~~~~s~~------~ig~~~g~if~i~il~ss~i~-----r~~~~~  158 (224)
T PF09930_consen   95 DSSRR-TF----LALSLPCPVCLTAIFFSIMLLAPSIGLSGW------EIGLVLGLIFFILILLSSFIF-----RRLKKP  158 (224)
T ss_pred             CCccc-ch----hhhhcCchHHHHHHHHHHHHHHHhcCchHH------HHHHHHHHHHHHHHHHHHHHH-----HHhcCC
Confidence            01111 11    122345777633 33444333332221111      112222233333323333331     122323


Q ss_pred             HHHHHHHHHHHHHHHHHhhh-hccc
Q 019423          314 INPMSGALLLGGGLYTFLDR-LFPT  337 (341)
Q Consensus       314 i~~isGilLI~~Giy~ll~~-~~p~  337 (341)
                      -..+.|-+|+..|+|+++.- +.|+
T Consensus       159 ~p~~LG~~Mi~~GlyfLl~aliiPn  183 (224)
T PF09930_consen  159 YPIILGNFMIFLGLYFLLSALIIPN  183 (224)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhh
Confidence            44578899999999988544 5554

>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease

Probab=96.73  E-value=0.58  Score=44.75  Aligned_cols=66  Identities=18%  Similarity=0.236  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019423          118 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ  191 (341)
Q Consensus       118 ~~~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~  191 (341)
                      +..+..+|+.|+.-++.|=-+-.+  +.+|..+      +++..+.++.+.+|-.++-.+.+++...+...+.+
T Consensus         2 l~ll~laf~~G~~HAl~PgH~kai--~~~~~~~------~~~~~~~g~~~~lg~s~~~~~~ai~lv~~~~~~~~   67 (282)
T PF03824_consen    2 LSLLLLAFLYGLLHALGPGHGKAI--IASYLLS------SRRALRVGLFFGLGHSLTHGLSAILLVLLALWLSE   67 (282)
T ss_pred             HHHHHHHHHHHHHHccCCChHHHH--HHHHHhh------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345778999999999998776655  5566542      11234567788888888888888777666555443

Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10995 inner membrane protein; Provisional

Probab=96.70  E-value=0.11  Score=48.36  Aligned_cols=82  Identities=18%  Similarity=0.236  Sum_probs=54.3

Q ss_pred             HHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 019423          125 FGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLA  204 (341)
Q Consensus       125 flaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~Gill  204 (341)
                      ...++..-++|  ...+|.+++...+. +.++|++..++...+.....+.+...|-..   -++++...+.+++.+|+++
T Consensus        11 ~~~~lf~iinP--~g~~pif~~lt~~~-~~~~r~~ia~~~~~~a~~ill~f~~~G~~i---l~~fgIs~~a~rIaGGilL   84 (221)
T PRK10995         11 GLVVLLPLANP--LTTVALFLGLSGNM-TPEERNRQALMASVYVFAIMMVAFYAGQLV---MSTFGISIPGLRIAGGLIV   84 (221)
T ss_pred             HHHHHHHHhch--hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCHHHHHHHHHHHH
Confidence            33455555555  45678888876543 334566666777777777766666666332   2444444456899999999


Q ss_pred             HHHHHHHH
Q 019423          205 IVMGLNLL  212 (341)
Q Consensus       205 Il~GL~lL  212 (341)
                      ..+|+.|+
T Consensus        85 ~~igi~ml   92 (221)
T PRK10995         85 AFIGFRML   92 (221)
T ss_pred             HHHHHHHh
Confidence            99999997

>TIGR00427 membrane protein, MarC family

Probab=96.67  E-value=0.44  Score=43.92  Aligned_cols=80  Identities=15%  Similarity=0.269  Sum_probs=55.1

Q ss_pred             HHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 019423          127 AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV  206 (341)
Q Consensus       127 aGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~GillIl  206 (341)
                      ..+..-++|  ...+|.+++...+. +.++|++..++...+.....+.|...|-.   +-+.++-..+.+++.+|+++.+
T Consensus        12 ~~Lf~iinP--ig~ipvfl~lt~~~-~~~~r~~ia~~~~l~a~~ill~f~~~G~~---iL~~fgIsl~afrIaGGiiL~~   85 (201)
T TIGR00427        12 ISLFAIINP--IGNIPIFISLTEYY-TAAERNKIAKKANISSFIILLIFLVFGDT---ILKLFGISIDAFRIAGGILLFT   85 (201)
T ss_pred             HHHHHHhCc--chHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCHHHHHHHHHHHHHH
Confidence            344444555  45678888876543 33456667777877888777788777743   2244444445688999999999


Q ss_pred             HHHHHH
Q 019423          207 MGLNLL  212 (341)
Q Consensus       207 ~GL~lL  212 (341)
                      .|+.|+
T Consensus        86 ia~~ml   91 (201)
T TIGR00427        86 IAMDML   91 (201)
T ss_pred             HHHHHh
Confidence            999997

MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.

>PRK11111 hypothetical protein; Provisional

Probab=96.55  E-value=0.23  Score=46.32  Aligned_cols=81  Identities=14%  Similarity=0.160  Sum_probs=54.3

Q ss_pred             HHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 019423          126 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAI  205 (341)
Q Consensus       126 laGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~GillI  205 (341)
                      ...+..-++|  ...+|.+++...+. +.++|++..++...+.....+.|...|-.   +-++++-....+++.+|+++.
T Consensus        14 ~~~Lf~iinP--ig~ipiflslt~~~-s~~~r~~ia~~a~l~a~~ill~f~~~G~~---iL~~fGIsl~afrIaGGiiL~   87 (214)
T PRK11111         14 FIGLFALVNP--VGILPVFISMTSHQ-TAAERNKTNLTANLSVAIILLISLFLGDF---ILNLFGISIDSFRIAGGILVV   87 (214)
T ss_pred             HHHHHHHhCc--chhHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCHHHHHHHHHHHHH
Confidence            3455555555  45679999876543 33456667777777777777777777632   223444334567899999999


Q ss_pred             HHHHHHH
Q 019423          206 VMGLNLL  212 (341)
Q Consensus       206 l~GL~lL  212 (341)
                      .+|+.|+
T Consensus        88 ~ial~Ml   94 (214)
T PRK11111         88 TIAMSMI   94 (214)
T ss_pred             HHHHHHh
Confidence            9999997

>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region

Probab=96.52  E-value=0.044  Score=49.78  Aligned_cols=82  Identities=24%  Similarity=0.183  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 019423          120 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLA  199 (341)
Q Consensus       120 ~l~~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i  199 (341)
                      .....|..|++.++.||. ++.+.......    +.|..++.....+|.+|.+.....+|.....+.+..+   +.+..+
T Consensus       117 ~~~~~~~lG~l~gllPCg-~~y~~l~~A~~----s~s~~~G~l~m~~FgLGT~p~ll~~~~~~~~l~~~~~---~~~~r~  188 (199)
T PF13386_consen  117 GPWGAFLLGFLNGLLPCG-PVYFALALAAA----SGSPLYGALLMLAFGLGTLPALLLAGLLAGKLSRRLR---RRLLRL  188 (199)
T ss_pred             CccHHHHHHHHHHHhHHH-HHHHHHHHHHH----cCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            456788999999999995 44444332222    2355567778899999999999999988877766554   334457


Q ss_pred             HHHHHHHHHH
Q 019423          200 ASGLAIVMGL  209 (341)
Q Consensus       200 ~GillIl~GL  209 (341)
                      .+++++++|+
T Consensus       189 ~g~~~i~~G~  198 (199)
T PF13386_consen  189 AGVLLIILGI  198 (199)
T ss_pred             HHHHHHHHHH
Confidence            8888888886

>TIGR00948 2a75 L-lysine exporter

Probab=96.14  E-value=0.46  Score=42.10  Aligned_cols=151  Identities=13%  Similarity=0.020  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHH---HhhhhHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhcCCCChH
Q 019423          164 SIAFSLGLATTLALLGVGASFAGK-AYG---QIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV  239 (341)
Q Consensus       164 ~l~f~lG~~lty~lLG~~~~~lG~-~l~---~~~~~l~~i~GillIl~GL~lLg~~~l~lp~~~~~~~~~~~~~~~~~~~  239 (341)
                      ++...+|..+...+.-.+...... .+.   ...+.+.++.+..++.+|..++.--+ +.+.  + .+..  ..+.++..
T Consensus        22 g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~~-~~~~--~-~~~~--~~~~~~~~   95 (177)
T TIGR00948        22 VLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTAW-RGPG--A-LVPD--EPKKMGLK   95 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccc--c-cccc--cccccCHH
Confidence            566677777766666554443222 333   23445678888888999998873211 1000  0 0000  01112334


Q ss_pred             HHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 019423          240 QAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSG  319 (341)
Q Consensus       240 ~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i~~isG  319 (341)
                      +.|.-|+...+ .-|=+...+.++......+.....-..+...+.+...+-....+.+.++.++..+.+|..+|++++.|
T Consensus        96 ~~f~~G~~~~l-~NPKa~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~g  174 (177)
T TIGR00948        96 KVLAMTLAVTL-LNPHVYLDTVVLIGALGLQFSDLLRWLFAAGAIAASLVWFASLAFGAARLSPLLASPKVWRIINLVVA  174 (177)
T ss_pred             HHHHHHHHHHH-hCchHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHh
Confidence            67888998886 46665322222222222221111111111111111111222223333444444445577789999888


Q ss_pred             HH
Q 019423          320 AL  321 (341)
Q Consensus       320 il  321 (341)
                      ++
T Consensus       175 ~~  176 (177)
T TIGR00948       175 VV  176 (177)
T ss_pred             hc
Confidence            65

>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]

Probab=96.09  E-value=0.51  Score=43.70  Aligned_cols=78  Identities=21%  Similarity=0.327  Sum_probs=54.1

Q ss_pred             HhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 019423          129 LVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMG  208 (341)
Q Consensus       129 ll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~GillIl~G  208 (341)
                      +....+|=  ..+|.+++...+. +.++|++..++...|.+.....|...|-..-   +.++.....+++..|+++..+|
T Consensus        14 Lf~i~dP~--G~ipvf~slt~~~-~~~~r~~v~~ra~i~a~~ill~f~~~G~~il---~~fgIsi~a~rIAGGilLf~ia   87 (203)
T COG2095          14 LFAIIDPI--GNLPVFISLTKGL-SPEERNRVALRASIIALLILLVFLLLGEGIL---RFFGISIDAFRIAGGILLFLIA   87 (203)
T ss_pred             HHHHhCCC--chhHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCchhHHHHhhhHHHHHHH
Confidence            33334554  2457777765443 3456777888898999999888888884432   3443334567899999999999


Q ss_pred             HHHH
Q 019423          209 LNLL  212 (341)
Q Consensus       209 L~lL  212 (341)
                      +.|+
T Consensus        88 ~~ml   91 (203)
T COG2095          88 LRML   91 (203)
T ss_pred             HHHh
Confidence            9998

>PRK10739 putative antibiotic transporter; Provisional

Probab=95.94  E-value=0.71  Score=42.52  Aligned_cols=79  Identities=13%  Similarity=0.217  Sum_probs=52.6

Q ss_pred             HHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 019423          128 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVM  207 (341)
Q Consensus       128 Gll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~GillIl~  207 (341)
                      .+..-.+|  ...+|.+++...+. +.++|++..++...+.....+.|...|-.   +-+.++-....+++..|+++.++
T Consensus        10 ~Lf~iinP--ig~ipiflslt~~~-~~~~r~~ia~~a~~~a~~ill~f~~~G~~---iL~~fGIsl~afrIAGGilL~~i   83 (197)
T PRK10739         10 LLILIMDP--LGNLPIFMSVLKHL-EPKRRRAIMIRELLIALLVMLVFLFAGEK---ILAFLNLRTETVSISGGIILFLI   83 (197)
T ss_pred             HHHHHHhH--hhHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCHHHHHHHHHHHHHHH
Confidence            34444444  45678888876543 34456666777777777777777777632   22444433456889999999999


Q ss_pred             HHHHH
Q 019423          208 GLNLL  212 (341)
Q Consensus       208 GL~lL  212 (341)
                      |+.|+
T Consensus        84 al~ml   88 (197)
T PRK10739         84 AIKMI   88 (197)
T ss_pred             HHHHh
Confidence            99997

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=95.71  E-value=0.014  Score=61.13  Aligned_cols=90  Identities=24%  Similarity=0.206  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhhCC--CCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhh
Q 019423          120 SLAVIFGAGLVTSL--SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ---IGT  194 (341)
Q Consensus       120 ~l~~aflaGll~sl--sPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~---~~~  194 (341)
                      ++..+|.+|.++.+  +||+-|-+...+.|+...   .+-..+...-.++.+|+.++|.++|++-   ++.+-+   +++
T Consensus       289 ~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Yiaqs---g~~~~g~~~l~al~LGMg~Plllv~~f~---~~~LPk~G~WM~  362 (569)
T COG4232         289 SIVGAFFMGALAGLVVSPCTAPPLAGALLYIAQS---GNALLGGLALYALGLGMGLPLLLIGVFG---NRLLPKPGPWMN  362 (569)
T ss_pred             chHHHHHHHHHHHHhcCcCcchhHHHHHHHHHhc---chHHHHHHHHHHHHHhcccchhhheecc---cccCCCCCcHHH
Confidence            37788999999877  899999999999998743   2333344444567889999999998765   444433   344


Q ss_pred             hHHHHHHHHHHHHHHHHHHHh
Q 019423          195 GLPLAASGLAIVMGLNLLEII  215 (341)
Q Consensus       195 ~l~~i~GillIl~GL~lLg~~  215 (341)
                      .++.+.|.+|+...++++.++
T Consensus       363 ~vK~~fGFvlLa~aiwLl~~~  383 (569)
T COG4232         363 TVKQAFGFVLLATAIWLLWRV  383 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            567888988888888887543

>PF09948 DUF2182: Predicted metal-binding integral membrane protein (DUF2182); InterPro: IPR018688 This family of various hypothetical bacterial membrane proteins having predicted metal-binding properties has no known function

Probab=95.40  E-value=0.45  Score=43.68  Aligned_cols=142  Identities=16%  Similarity=0.159  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHhhhh------ccccccccc
Q 019423          161 IGDSIAFSLGLATTLALLGVGASFAGKAYGQIG-------TGLPLAASGLAIVMGLNLLEIIELQ------LPSFFDNFD  227 (341)
Q Consensus       161 ~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~-------~~l~~i~GillIl~GL~lLg~~~l~------lp~~~~~~~  227 (341)
                      ......|..|-..+-...|+.+..+...+....       ..-+++.+.++++.|+..+.-+|..      -|..+    
T Consensus        36 ~~~~~~f~~GYl~vW~~~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~Ll~AG~yQ~sp~K~~cL~~Cr~p~~f----  111 (191)
T PF09948_consen   36 ARSTALFVAGYLAVWLAFGLVATALQWALHQLALLSPMMASASPWLAGAVLLAAGLYQFSPLKQACLNHCRSPLSF----  111 (191)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHCCCcchH----
Confidence            455788999999999999998877766554321       1235778888899999988555431      12110    


Q ss_pred             hhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 019423          228 PRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSF  307 (341)
Q Consensus       228 ~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~llll~fgLG~~lPLlll~~~~~~l~~~~~~  307 (341)
                        ....-+++..+++-+|+-.|+.-..|+-++....+  +.               |.....-+.+++.+.    ...|.
T Consensus       112 --~~~~wr~g~~~alr~Gl~hG~~CvGCCWaLMllmf--v~---------------G~mnl~wMa~lt~~~----~~EK~  168 (191)
T PF09948_consen  112 --LAFHWRAGARGALRMGLRHGLYCVGCCWALMLLMF--VV---------------GVMNLAWMAALTALM----FAEKL  168 (191)
T ss_pred             --hhcCCCcccchHHHHHHHHccHHHHHHHHHHHHHH--Hh---------------ccccHHHHHHHHHHH----HHHHh
Confidence              00112345788999999999988888855433221  22               222222222222211    11234


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHH
Q 019423          308 RKFSSWINPMSGALLLGGGLYT  329 (341)
Q Consensus       308 ~k~~~~i~~isGilLI~~Giy~  329 (341)
                      ..+++++.+..|+.+++.|+.+
T Consensus       169 ~p~g~~l~r~~G~~l~~~g~~l  190 (191)
T PF09948_consen  169 LPWGRRLSRAVGVALIVWGVLL  190 (191)
T ss_pred             CCcchHHHHHHHHHHHHHHHHH
Confidence            5678899999999999999874

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional

Probab=93.90  E-value=0.67  Score=44.98  Aligned_cols=84  Identities=29%  Similarity=0.333  Sum_probs=58.8

Q ss_pred             HHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------HhhhhH
Q 019423          124 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGK-AYG------QIGTGL  196 (341)
Q Consensus       124 aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~-~l~------~~~~~l  196 (341)
                      .+..|+..++-||..++.-++++...     +.-..+....++|.+|.+++.+.+|+++....+ ...      ...+..
T Consensus       180 ~l~igl~~Gl~PCpgAl~VLL~a~~l-----g~~~~Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~  254 (279)
T PRK10019        180 ILLFGLTGGLIPCPAAITVLLICIQL-----KALTLGATLVLSFSIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRA  254 (279)
T ss_pred             hhHHHHHhccCCCHHHHHHHHHHHHh-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            35678888889998877655554432     233356778899999999999999998753322 211      122345


Q ss_pred             HHHHHHHHHHHHHHHH
Q 019423          197 PLAASGLAIVMGLNLL  212 (341)
Q Consensus       197 ~~i~GillIl~GL~lL  212 (341)
                      +++.+.+.+++|+.+.
T Consensus       255 p~~s~~l~i~~G~~~~  270 (279)
T PRK10019        255 PYFSSLLIGLVGVYMG  270 (279)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6999999999999775

>COG2836 Uncharacterized conserved protein [Function unknown]

Probab=93.81  E-value=1.4  Score=41.56  Aligned_cols=125  Identities=26%  Similarity=0.261  Sum_probs=78.9

Q ss_pred             hhhhHHHHhcchhhhhhhhHhhhhhhhh-------HHHHHHhh----c---cchhHHHHHHHHHHHhhCCCCCccchHHH
Q 019423           78 GAASVYTMADGSLGDMFGGFLYSAGQQA-------NEAVLGQL----S---ALSFTSLAVIFGAGLVTSLSPCTLSVLPL  143 (341)
Q Consensus        78 ~~~~~~~~~~g~~~~~~~~~l~~~g~~~-------~~~~~~~L----~---~~~~~~l~~aflaGll~slsPCvlp~lp~  143 (341)
                      .-|.+...+-|.+.+++|  +|.+++..       .|.+.+.+    +   ..+.-....++..|++-.+-||- ++-+.
T Consensus        77 ~~~~~l~i~ag~~li~lG--L~l~~~~~~~~~~~~~p~i~~~~~~~l~~~r~l~~~~~~~~~~lG~~wG~lPCG-lVYs~  153 (232)
T COG2836          77 GLRGVLFIIAGALLIALG--LYLLARGGMWSGALKLPFIGGFLWRLLKPIRLLPLKPLPGALFLGMLWGLLPCG-LVYSA  153 (232)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHhcccchhhHHhhchhcchHHHHhhhhhhccccCcchHHHHHHHHhcccchH-HHHHH
Confidence            446777778889999999  77744322       12222111    1   01112256788889999999997 33333


Q ss_pred             HHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 019423          144 TLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLL  212 (341)
Q Consensus       144 ~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~~~~l~~i~GillIl~GL~lL  212 (341)
                      .+..+.    +.|..++...-++|.+|..-+....|.+...+.+..++   .+....+.+++..|+..+
T Consensus       154 l~~A~~----tgS~~~Gal~mlaFGlGTlP~ll~~G~~s~~~s~~~r~---~~~rl~~gl~~v~g~~~l  215 (232)
T COG2836         154 LAYALS----TGSAFEGALVMLAFGLGTLPNLLAMGIFSSKLSKSSRK---RLNRLSGGLMVVVGLIGL  215 (232)
T ss_pred             HHHHHH----cCCHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHH
Confidence            332222    34556677778999999999999999988777666543   334455556666666554

>PRK11469 hypothetical protein; Provisional

Probab=88.65  E-value=19  Score=32.84  Aligned_cols=26  Identities=15%  Similarity=0.293  Sum_probs=22.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhhh
Q 019423          309 KFSSWINPMSGALLLGGGLYTFLDRL  334 (341)
Q Consensus       309 k~~~~i~~isGilLI~~Giy~ll~~~  334 (341)
                      +.++|.+.+.|+++++.|++++++.+
T Consensus       161 ~~g~~a~~lgG~iLI~iGi~il~~h~  186 (188)
T PRK11469        161 IIGKKAEILGGLVLIGIGVQILWTHF  186 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            56778999999999999999887543

>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=88.09  E-value=7  Score=38.38  Aligned_cols=85  Identities=25%  Similarity=0.251  Sum_probs=58.2

Q ss_pred             HHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------h
Q 019423          123 VIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ----------I  192 (341)
Q Consensus       123 ~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~----------~  192 (341)
                      ..+..|+..++-||...+.-+.+++..+     -...+....+++.+|..+|-+.++.++-..-+...+          .
T Consensus       203 ~~~~~~l~~GLrPCpgAi~VLlfal~~g-----l~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~~~~g~~~~~~~~  277 (303)
T COG2215         203 QQWLFGLTGGLRPCPGAIFVLLFALSLG-----LYTLGILSVLAMSIGTALTVSALALLAVTAKNTAVRLSGFRTLAKRI  277 (303)
T ss_pred             HHHHHHHHhcCccCcHHHHHHHHHHHhc-----hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            4566777788889998887766666432     222456678889999999977777666544332211          1


Q ss_pred             hhhHHHHHHHHHHHHHHHHH
Q 019423          193 GTGLPLAASGLAIVMGLNLL  212 (341)
Q Consensus       193 ~~~l~~i~GillIl~GL~lL  212 (341)
                      ...+.++.|.+++++|+.++
T Consensus       278 ~~~~~l~~gli~l~~g~~~l  297 (303)
T COG2215         278 SYIVSLLGGLIGLYFGLHLL  297 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            23456788888999998877

>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family

Probab=84.64  E-value=12  Score=36.32  Aligned_cols=162  Identities=18%  Similarity=0.201  Sum_probs=82.1

Q ss_pred             HHHHHHHhhCCCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hhhhh
Q 019423          123 VIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYG-------QIGTG  195 (341)
Q Consensus       123 ~aflaGll~slsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~-------~~~~~  195 (341)
                      .++..|+--++-|=-+..+--+.--..     ++.++....+..|.+|=.++-.++.++++.....+.       +....
T Consensus         3 la~~lGlrHA~DaDHiaAId~~trkl~-----~~~~~~~~~G~~fslGHs~vV~l~~l~ia~~~~~~~~~~~~~~~igg~   77 (280)
T TIGR00802         3 LAYVLGLRHAFDADHIAAIDNTTRKLM-----QQGRRPLGVGFFFSLGHSTVVVLATVLIAVASALLTERLDGLHEIGGL   77 (280)
T ss_pred             HHHHhhhhccCCcchhhhhHHHHHHHh-----hcCCCceeeeeeecCccHHHHHHHHHHHHHHHHHHHhhchhHHhccce
Confidence            466777777776655443322221111     122344566788888887776666555554333332       22222


Q ss_pred             H-HHHHHHHHHHHHHHHH----HHhhh-h-cccc---cc---------ccchhh-hh--cCCCChHHHHHHhHHhhhccC
Q 019423          196 L-PLAASGLAIVMGLNLL----EIIEL-Q-LPSF---FD---------NFDPRA-AA--ANFPSSVQAYLAGLTFALAAS  253 (341)
Q Consensus       196 l-~~i~GillIl~GL~lL----g~~~l-~-lp~~---~~---------~~~~~~-~~--~~~~~~~~afllGll~gL~~~  253 (341)
                      + ..+.+.+++++|+.-+    +.++. + ....   .+         .+..|. ++  +..++++..|.+|++||+.+=
T Consensus        78 iGt~VS~~FL~~ig~~Nl~iL~~~~~~~r~~r~g~~~~~~l~~~l~~rG~~~Rll~~lf~~v~~pw~mypvG~LFGLGFD  157 (280)
T TIGR00802        78 IGTLVSALFLLIIALLNLVILRNLLRLFRKVRRGIYDEADLEALLGNRGLLTRLLGPLFRLVTKSWHMYPVGFLFGLGFD  157 (280)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhccCcHHHHHHHHHHHhcCchHHHHHHHHHHcccc
Confidence            2 5677777777775533    22211 0 0000   00         000010 11  124677889999999999654


Q ss_pred             CCchHHHHHHHHHHhhcC-ChhHHHHHHHHHHhhHHH
Q 019423          254 PCSTPVLATLLGYVATSK-DPLIGGTLLLSYTTGYVA  289 (341)
Q Consensus       254 PC~gPil~~iL~~aa~sg-s~~~G~llll~fgLG~~l  289 (341)
                      --+---+.++-..+++++ +...-..+.+.|..|+++
T Consensus       158 TATEIaLL~isa~~a~~g~~~~~il~lP~LFtaGM~L  194 (280)
T TIGR00802       158 TATEVALLGLSASAAARGLSIAAVLSLPVLFAAGMAL  194 (280)
T ss_pred             hHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhhhHH
Confidence            333222333333333333 344455557778888854

This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=84.47  E-value=15  Score=32.43  Aligned_cols=132  Identities=14%  Similarity=0.020  Sum_probs=68.8

Q ss_pred             hhhhhhHHHHhcchhhhhhhhHhhhhhhhhHHHHHHhhccchhHHHHHHHHHHHhhCC-CCCccchHHHHHHHHhhcCCC
Q 019423           76 LEGAASVYTMADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSL-SPCTLSVLPLTLGYIGAFGSG  154 (341)
Q Consensus        76 ~~~~~~~~~~~~g~~~~~~~~~l~~~g~~~~~~~~~~L~~~~~~~l~~aflaGll~sl-sPCvlp~lp~~l~~l~~~~~~  154 (341)
                      .+.-+...+..|+....|++-.........++--+++-+   .-+..-.|.-|+...+ ||=.++.--.+.+.....  +
T Consensus        55 ~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~~~~~~~~~---~~~~~~~f~~g~~~~~~NPk~il~~~~~~~~~~~~--~  129 (191)
T PF01810_consen   55 SPWLFMILKLLGALYLLYLGYKLLRSKFSSKSSTQSEAK---KQSKSKSFLTGFLLNLLNPKAILFWLAVFPQFISP--E  129 (191)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhc---cccHHHHHHHHHHHHHHhHHHHHHHHHhhhcccCc--c
Confidence            445566778899999999982222222121111111111   1223345666666544 887755443333332221  1


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHH
Q 019423          155 KSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI-GTGLPLAASGLAIVMGLNLL  212 (341)
Q Consensus       155 ~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~~-~~~l~~i~GillIl~GL~lL  212 (341)
                      .+.............+-.+.+..++.......+.+... .+++..+.|.+++.+|+.++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~li~~av~l~  188 (191)
T PF01810_consen  130 YSSTQFLVFILGIFLGSLLWFLLLALLGSRLRRKFSSRRIRWINRISGLLLIGFAVYLL  188 (191)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            22222233334445555556666666655555544332 23678899999999998875

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>COG5486 Predicted metal-binding integral membrane protein [Function unknown]

Probab=84.39  E-value=40  Score=32.41  Aligned_cols=170  Identities=18%  Similarity=0.179  Sum_probs=98.4

Q ss_pred             CCCCccchHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHH
Q 019423          133 LSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ-------IGTGLPLAASGLAI  205 (341)
Q Consensus       133 lsPCvlp~lp~~l~~l~~~~~~~sr~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~l~~-------~~~~l~~i~GillI  205 (341)
                      ..|-+.|++-.+... +.+  .+-|.+-..+.+.|..|-.......|+++..+-.....       .....+++.|+.++
T Consensus        97 MlPsaaPmi~~ya~i-~r~--~~~~g~pva~t~~f~aGyl~vW~af~llat~l~~l~~a~al~~p~~s~~~~l~gg~~L~  173 (283)
T COG5486          97 MLPSAAPMILLYAEI-GRT--AAIRGEPVAHTLVFVAGYLLVWAAFGLLATGLQWLLHAFALLGPILSPLSGLAGGLTLL  173 (283)
T ss_pred             hCccccHHHHHHHHH-HHH--HHhcCCceeehHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccchhcchhhHHHHHHHH
Confidence            468887777554422 111  11122334568899999999999999887654443321       11234677888889


Q ss_pred             HHHHHHHHHhh------hhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhhcCChhHHHHH
Q 019423          206 VMGLNLLEIIE------LQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTL  279 (341)
Q Consensus       206 l~GL~lLg~~~------l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~sgs~~~G~ll  279 (341)
                      +-|++.+.-+|      .+-|-.+  ..+..  ..+.+..++|-+|+-=|+.-.-|+=.+ ..                +
T Consensus       174 vAGlYQft~LK~~CL~qCrtPl~f--l~shw--~fr~~p~ga~~LGlrhGlyClGCCWAL-m~----------------l  232 (283)
T COG5486         174 VAGLYQFTTLKHACLSQCRTPLSF--LFSHW--RFRAKPVGAFRLGLRHGLYCLGCCWAL-ML----------------L  232 (283)
T ss_pred             HhhhhhhccHHHHHHHHccchHHH--HHHhc--CcccCcchhhhhccccccchHHHHHHH-HH----------------H
Confidence            99999874322      1222111  00011  123567889999999998877887222 11                1


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 019423          280 LLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTF  330 (341)
Q Consensus       280 ll~fgLG~~lPLlll~~~~~~l~~~~~~~k~~~~i~~isGilLI~~Giy~l  330 (341)
                      |++=|.+...-+.+++.+.-    +.|...+++.+.+++|.++...|.+.+
T Consensus       233 lfv~Gvmnl~Wma~ial~vl----iEK~~~~Gr~~srv~gall~a~gaw~l  279 (283)
T COG5486         233 LFVVGVMNLLWMALIALLVL----IEKQTSPGRRLSRVAGALLAAAGAWLL  279 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHhccCcccchHHHHHHHHHHHHHhhc
Confidence            22223333333333333221    122345678888899999999999854

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=81.65  E-value=73  Score=33.45  Aligned_cols=101  Identities=23%  Similarity=0.259  Sum_probs=56.2

Q ss_pred             hHHHHhcchhhhhhhhHhhhhhhhh-HH------HHHHhhcc-chhHHHHHHHHHHHhhCC-CCCccchHHHHHHHHhhc
Q 019423           81 SVYTMADGSLGDMFGGFLYSAGQQA-NE------AVLGQLSA-LSFTSLAVIFGAGLVTSL-SPCTLSVLPLTLGYIGAF  151 (341)
Q Consensus        81 ~~~~~~~g~~~~~~~~~l~~~g~~~-~~------~~~~~L~~-~~~~~l~~aflaGll~sl-sPCvlp~lp~~l~~l~~~  151 (341)
                      .++....|.+.|.++..-.=...+. .-      .+...... ..+.-+...|+.|....+ .|.--.++|-.+.     
T Consensus        59 ~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~-----  133 (524)
T PF05977_consen   59 LLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVP-----  133 (524)
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence            3678888888887764221111111 10      01111112 234566677888887766 4665555554431     


Q ss_pred             CCCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019423          152 GSGKSR-AQIIGDSIAFSLGLATTLALLGVGASFAGKA  188 (341)
Q Consensus       152 ~~~~sr-~~~~~~~l~f~lG~~lty~lLG~~~~~lG~~  188 (341)
                        +++- +..-.+...+++.+++.-.+-|++.+.+|..
T Consensus       134 --~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~  169 (524)
T PF05977_consen  134 --KEDLPAANALNSISFNIARIIGPALGGILVAFFGAA  169 (524)
T ss_pred             --HhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence              1111 1223567788888888888888887766654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter

Probab=80.33  E-value=28  Score=34.27  Aligned_cols=131  Identities=15%  Similarity=0.105  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH-hhhhccccccccchhhhhcCCCChHHHHHHhHHhhhccCCCchHHHHHHHHHHhh-cCCh
Q 019423          196 LPLAASGLAIVMGLNLLEI-IELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT-SKDP  273 (341)
Q Consensus       196 l~~i~GillIl~GL~lLg~-~~l~lp~~~~~~~~~~~~~~~~~~~~afllGll~gL~~~PC~gPil~~iL~~aa~-sgs~  273 (341)
                      +..+.|+-++++|+.+++. ++ +.  ..++.+.... .-.+++..+++.|.......= -+.....-....+.+ --+.
T Consensus         5 ~~llgGlgl~l~Gl~~~~~~l~-~~--~g~~~~~~l~-~~t~~~~~a~l~G~~~Tal~Q-SSsa~t~i~i~lv~~G~l~~   79 (307)
T TIGR00704         5 LHLLSAVAFLLWGMHIVRTGVM-RV--FGARLRTVLS-RSTEKKPLAFLAGIGVTAIVQ-SSNATTVLVISFVAAGVLSL   79 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HH--hhhHHHHHHH-HHcCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCH
Confidence            4566777788899998843 22 11  1111111111 123556778888888775332 222222222222322 1255


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHH----------HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 019423          274 LIGGTLLLSYTTGYVAPLLLAASFA----------GALQSLLSFRKFSSWINPMSGALLLGGGLYTFL  331 (341)
Q Consensus       274 ~~G~llll~fgLG~~lPLlll~~~~----------~~l~~~~~~~k~~~~i~~isGilLI~~Giy~ll  331 (341)
                      ..+..+++.=++|+++.-.+++.-.          +.+..+.+.+|++++-+.+.|+-++.+|+.++-
T Consensus        80 ~~al~iilGANiGTt~t~~l~s~~~~~~~p~~~~~g~~~~~~~~~~~~~~G~~l~G~gllf~gl~~m~  147 (307)
T TIGR00704        80 APAIVIILGANVGTTLTARILAFDLSILSPLLIIGGVLFFLGRQSRAGQLGRSGIGLGLIFLALELIS  147 (307)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666777765555443311          111112223456677777888888888887653

This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=80.19  E-value=36  Score=31.27  Aligned_cols=73  Identities=11%  Similarity=0.110  Sum_probs=41.8

Q ss_pred             cCCCchHHHHHHHHHHhhcCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hhhhhhhhhHHHHHHHHHHHHHHHHH
Q 019423          252 ASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSL-LSFRKFSSWINPMSGALLLGGGLYTF  330 (341)
Q Consensus       252 ~~PC~gPil~~iL~~aa~sgs~~~G~llll~fgLG~~lPLlll~~~~~~l~~~-~~~~k~~~~i~~isGilLI~~Giy~l  330 (341)
                      -..|.-.+|.++.+    +.++.+-...+..|.+..++-..+.-. ..+.+.+ +.++|+++   .+..+++++.|+|.+
T Consensus       108 nGgDNigIYiP~Fa----~~s~~~l~v~l~vF~ilv~v~c~la~~-l~~~p~i~~~leryg~---~l~p~v~I~LGi~Il  179 (191)
T PF03596_consen  108 NGGDNIGIYIPLFA----SLSLAELIVILIVFLILVGVWCFLAYK-LARIPIIAEFLERYGR---WLVPIVYIGLGIYIL  179 (191)
T ss_pred             cCCCeEEEeehhhh----cCCHHHHHHHHHHHHHHHHHHHHHHHH-HhCChHHHHHHHHhcc---cHHHHHHHHhCceee
Confidence            36677656665543    345667777777777776544433322 2222222 12344444   455578899999977


Q ss_pred             hh
Q 019423          331 LD  332 (341)
Q Consensus       331 l~  332 (341)
                      .+
T Consensus       180 ~e  181 (191)
T PF03596_consen  180 IE  181 (191)
T ss_pred             Ee
Confidence            54

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00