Citrus Sinensis ID: 019435

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-

MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSKKKKSK

cccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHccEEEEEccccEEEEEcccccccHHHHHHHHHHHHHHHccccHHHHHHHcccccEEEEEEcccccccHHHHHHHHccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc

ccccccccccccccccccccccccccccccccccccccHccccccccHHcHHHHHcHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccEEEEcccccccHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccHHHHcHHHHHHcHcccccccccccccccccccccccHHHHHHHccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHEEccccccccccccc

mgenmektvnkkhkgkhdkpkpwdedpnidhwkvekfdpfwneggmlevssfstlFPQYREKYLQEAWPMVKGALKEYGVSCELNLvegsmtvsttrktrdpyiIVKARDLIRLlsrsvpapqaikILDDEMQCDIIKIGNLVRNKERFVKRrqhlvgpnsstlKALEILTGCYILVQILMVKKElekdpalanenwdrflpkfkkknvkqkkvkskekkpytpfppppqpskidkLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKrkrdaafippeepsrqnsceaedkTNDVAAMAKSLKEKAKKLRKQKFaeninpeeyiaasgekpskkkksk

mgenmektvnkkhkgkhdkpkpwdedpnidHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVegsmtvsttrktrdpyiIVKARDLIRLLSRSVPAPQaikilddemqcDIIKIGNLVRNKERFvkrrqhlvgpnsstlkaLEILTGCYILVQILMVKKELEKDpalanenwdrflpkfkkknvkqkkvkskekkpytpfppppqpskidKLLESGEYFLSerkkeskkwqEKQEKQaektaenkrkrdaafippeepsrqnsceaedKTNDVAAMAKSLKEKAKKlrkqkfaeninpeeyiaasgekpskkkksk

MGENMEKTVNkkhkgkhdkpkpWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQILMVKKELEKDPALANENWDRFLPkfkkknvkqkkvkskekkpytpfppppqpskidkLLESGEYFLSerkkeskkwqekqekqaektaenkRKRDAAFIPPEEPSRQNSCEAEDKTNDVaamakslkekakklrkqkfaENINPEEYIAASGEkpskkkksk

****************************IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQILMVKKELEKDPALANENWDRFL********************************************************************************************************************************************

***************************NIDHWKVEKFDP*WNE**MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQILMVKKELEKD**LA*ENWDRF********************************KIDKLLE******************************************************************************************************

**********************WDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQILMVKKELEKDPALANENWDRFLPKFKK*******************PPPPQPSKIDKLLESGEYFLS***************************DAAFIPP************DKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAA************

*********************PWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQILMVKKELEKDPALANENWDRFLPKFKKKNVK*********KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKK*********************A********************DVAAMAKSLKEKAKKLRKQK**E*I********************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		341	2.2.26 [Sep-21-2011]
O74777		327	KRR1 small subunit proces	yes	no	0.806	0.840	0.555	3e-82
E7QBZ1		316	KRR1 small subunit proces	N/A	no	0.777	0.838	0.547	1e-80
E7LRT8		316	KRR1 small subunit proces	N/A	no	0.777	0.838	0.547	1e-80
P25586		316	KRR1 small subunit proces	yes	no	0.777	0.838	0.547	1e-80
C8Z430		316	KRR1 small subunit proces	N/A	no	0.777	0.838	0.547	1e-80
B5VEQ2		316	KRR1 small subunit proces	N/A	no	0.777	0.838	0.547	1e-80
B3LU25		316	KRR1 small subunit proces	N/A	no	0.777	0.838	0.547	1e-80
B4N0P7		347	KRR1 small subunit proces	N/A	no	0.791	0.778	0.504	1e-76
B3N899		345	KRR1 small subunit proces	N/A	no	0.850	0.840	0.472	5e-76
Q13601		381	KRR1 small subunit proces	yes	no	0.850	0.761	0.481	5e-76

>sp\|O74777\|KRR1_SCHPO KRR1 small subunit processome component homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mis3 PE=3 SV=1	Back alignment and function desciption

 Score =  305 bits (781), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 174/313 (55%), Positives = 217/313 (69%), Gaps = 38/313 (12%)

Query: 9   VNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAW 68
           VNK  + + DKP  WD D +IDHWK+E F    ++   LE SSF+TLFP+YREKYL+E W
Sbjct: 14  VNKNKRYRRDKP--WDTD-DIDHWKIEPFTKDDSKESFLEESSFATLFPKYREKYLREVW 70

Query: 69  PMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL 128
           P V  AL ++G++C L+LVEGSMTV TTRKT DPY I+ ARDLI+LL+RSVP PQA+KI+
Sbjct: 71  PHVTRALDKFGITCVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIM 130

Query: 129 DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQI--------- 179
            D + CDIIKIGN++RNKERFVKRRQ L+G N  TLKALE+LT CYILVQ          
Sbjct: 131 QDGVACDIIKIGNILRNKERFVKRRQRLIGTNGQTLKALELLTQCYILVQGTTVAVMGGY 190

Query: 180 -------------------------LMVKKELEKDPALANENWDRFLPKFKKKNVKQKK- 213
                                    LM+K+EL KDP LANE+WDRFLP+FKK+NV ++K 
Sbjct: 191 KGLKEVRRIVEDCMHNIHPIYHIKELMIKRELAKDPTLANESWDRFLPQFKKRNVARRKP 250

Query: 214 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 273
            K +E K YTPFPP   PSK+D  +ESGEYFL + +KE KK  EK+E+Q EK  E +++R
Sbjct: 251 AKIRETKEYTPFPPAQPPSKLDLEIESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKER 310

Query: 274 DAAFIPPEEPSRQ 286
             AFIPPEE S++
Sbjct: 311 MKAFIPPEESSKK 323

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp\|E7QBZ1\|KRR1_YEASZ KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain Zymaflore VL3) GN=KRR1 PE=3 SV=1	Back alignment and function description

>sp\|E7LRT8\|KRR1_YEASV KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain VIN 13) GN=KRR1 PE=3 SV=1	Back alignment and function description

>sp\|P25586\|KRR1_YEAST KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KRR1 PE=1 SV=1	Back alignment and function description

>sp\|C8Z430\|KRR1_YEAS8 KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=KRR1 PE=3 SV=1	Back alignment and function description

>sp\|B5VEQ2\|KRR1_YEAS6 KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain AWRI1631) GN=KRR1 PE=3 SV=1	Back alignment and function description

>sp\|B3LU25\|KRR1_YEAS1 KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain RM11-1a) GN=KRR1 PE=3 SV=1	Back alignment and function description

>sp\|B4N0P7\|KRR1_DROWI KRR1 small subunit processome component homolog OS=Drosophila willistoni GN=dbe PE=3 SV=1	Back alignment and function description

>sp\|B3N899\|KRR1_DROER KRR1 small subunit processome component homolog OS=Drosophila erecta GN=dbe PE=3 SV=1	Back alignment and function description

>sp\|Q13601\|KRR1_HUMAN KRR1 small subunit processome component homolog OS=Homo sapiens GN=KRR1 PE=1 SV=4	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		341
255544688		377	Ribosomal RNA assembly protein mis3, put	0.938	0.848	0.757	1e-137
356501320		389	PREDICTED: ribosomal RNA assembly protei	0.964	0.845	0.728	1e-137
359807638		389	uncharacterized protein LOC100816856 [Gl	0.964	0.845	0.723	1e-136
224094246		379	predicted protein [Populus trichocarpa]	0.967	0.870	0.698	1e-131
357493549		424	KRR1 small subunit processome component-	0.897	0.721	0.728	1e-131
218184655		395	hypothetical protein OsI_33853 [Oryza sa	0.947	0.817	0.684	1e-131
388504376		380	unknown [Medicago truncatula]	0.897	0.805	0.728	1e-131
115482288		395	Os10g0452800 [Oryza sativa Japonica Grou	0.947	0.817	0.681	1e-130
296083097		424	unnamed protein product [Vitis vinifera]	0.964	0.775	0.739	1e-130
225429319		386	PREDICTED: ribosomal RNA assembly protei	0.964	0.852	0.739	1e-130

>gi\|255544688\|ref\|XP_002513405.1\| Ribosomal RNA assembly protein mis3, putative [Ricinus communis] gi\|223547313\|gb\|EEF48808.1\| Ribosomal RNA assembly protein mis3, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/355 (75%), Positives = 290/355 (81%), Gaps = 35/355 (9%)

Query: 19  KPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY 78
           KPKPWDEDPNID WK+EKFDP WNEGGMLEVSSFSTLFPQYREKYLQE WPMVK A+KEY
Sbjct: 17  KPKPWDEDPNIDRWKIEKFDPSWNEGGMLEVSSFSTLFPQYREKYLQEVWPMVKSAIKEY 76

Query: 79  GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 138
           GV+CELNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKIL DEMQCDIIK
Sbjct: 77  GVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILHDEMQCDIIK 136

Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------------------- 178
           IGNLVR KERFVKRRQHLVGPNSSTLKALEILTGCYILVQ                    
Sbjct: 137 IGNLVRKKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRKIV 196

Query: 179 ---------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYT 223
                          ILM+KKELEKDPAL NENWDRFLPKFKKKNVK  KVK KEKKPYT
Sbjct: 197 EDCIQNKLHPVYHIKILMMKKELEKDPALQNENWDRFLPKFKKKNVKHNKVKRKEKKPYT 256

Query: 224 PFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEP 283
           PFPP  QPSK+D+ LESGEYFL+ +KK++KKWQEKQE+QAEKTAENKRKRD AF+PPEE 
Sbjct: 257 PFPPEQQPSKVDRELESGEYFLNNQKKQAKKWQEKQERQAEKTAENKRKRDTAFVPPEEH 316

Query: 284 SRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSKKK 338
             Q++ ++EDK NDVAA+A S+K+KAK   K+   ENIN EEYIAASGE P KKK
Sbjct: 317 RDQDAGKSEDKNNDVAAIALSIKKKAKDFGKKNAVENINAEEYIAASGELPKKKK 371

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356501320\|ref\|XP_003519473.1\| PREDICTED: ribosomal RNA assembly protein mis3-like [Glycine max]	Back alignment and taxonomy information

>gi\|359807638\|ref\|NP_001241422.1\| uncharacterized protein LOC100816856 [Glycine max] gi\|255639399\|gb\|ACU19995.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|224094246\|ref\|XP_002310107.1\| predicted protein [Populus trichocarpa] gi\|222853010\|gb\|EEE90557.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357493549\|ref\|XP_003617063.1\| KRR1 small subunit processome component-like protein [Medicago truncatula] gi\|355518398\|gb\|AET00022.1\| KRR1 small subunit processome component-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|218184655\|gb\|EEC67082.1\| hypothetical protein OsI_33853 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|388504376\|gb\|AFK40254.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi|115482288|ref|NP_001064737.1| Os10g0452800 [Oryza sativa Japonica Group] gi|31432429|gb|AAP54059.1| Ribosomal RNA assembly protein mis3, putative, expressed [Oryza sativa Japonica Group] gi|113639346|dbj|BAF26651.1| Os10g0452800 [Oryza sativa Japonica Group] gi|215687236|dbj|BAG91801.1| unnamed protein product [Oryza sativa Japonica Group] gi|222612935|gb|EEE51067.1| hypothetical protein OsJ_31745 [Oryza sativa Japonica Group]

Back alignment and taxonomy information

>gi\|296083097\|emb\|CBI22501.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225429319\|ref\|XP_002271394.1\| PREDICTED: ribosomal RNA assembly protein mis3-like [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		341
TAIR\|locus:2150818		391	AT5G08420 [Arabidopsis thalian	0.457	0.398	0.865	8.8e-93
POMBASE\|SPBC25B2.05		327	mis3 "rRNA processing protein	0.454	0.474	0.666	4.5e-67
MGI\|MGI:1289274		380	Krr1 "KRR1, small subunit (SSU	0.436	0.392	0.644	2.9e-60
UNIPROTKB\|E2R869		380	KRR1 "KRR1 small subunit proce	0.436	0.392	0.651	7.5e-60
RGD\|1306183		387	Krr1 "KRR1, small subunit (SSU	0.436	0.385	0.651	9.6e-60
ASPGD\|ASPL0000001309		358	AN5875 [Emericella nidulans (t	0.454	0.432	0.681	6.9e-57
UNIPROTKB\|G4N4Y1		320	MGG_06049 "KRR1 small subunit	0.451	0.481	0.666	1.8e-56
UNIPROTKB\|F1SGD9		375	KRR1 "KRR1 small subunit proce	0.436	0.397	0.651	5.4e-53
UNIPROTKB\|Q13601		381	KRR1 "KRR1 small subunit proce	0.436	0.391	0.651	6.9e-53
SGD\|S000000564		316	KRR1 "Nucleolar protein requir	0.454	0.490	0.658	8.7e-53

TAIR\|locus:2150818 AT5G08420 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 717 (257.5 bits), Expect = 8.8e-93, Sum P(3) = 8.8e-93
 Identities = 135/156 (86%), Positives = 144/156 (92%)

Query:    23 WDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSC 82
             WD+DPNID W +EKFDP WN  GM E S+FSTLFPQYREKYLQE WP V+ ALKEYGV+C
Sbjct:    30 WDDDPNIDRWTIEKFDPAWNPTGMTETSTFSTLFPQYREKYLQECWPRVESALKEYGVAC 89

Query:    83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNL 142
             +LNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKIL+DE+QCDIIKIGNL
Sbjct:    90 KLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILEDEVQCDIIKIGNL 149

Query:   143 VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
             VRNKERFVKRRQ LVGPNSSTLKALEILT CYILVQ
Sbjct:   150 VRNKERFVKRRQRLVGPNSSTLKALEILTNCYILVQ 185

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

POMBASE\|SPBC25B2.05 mis3 "rRNA processing protein Mis3" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

MGI\|MGI:1289274 Krr1 "KRR1, small subunit (SSU) processome component, homolog (yeast)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R869 KRR1 "KRR1 small subunit processome component" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

RGD\|1306183 Krr1 "KRR1, small subunit (SSU) processome component, homolog (yeast)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000001309 AN5875 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|G4N4Y1 MGG_06049 "KRR1 small subunit processome component" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SGD9 KRR1 "KRR1 small subunit processome component" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q13601 KRR1 "KRR1 small subunit processome component homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

SGD\|S000000564 KRR1 "Nucleolar protein required for rRNA synthesis and ribosomal assembly" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3B7L9	KRR1_BOVIN	No assigned EC number	0.5121	0.7419	0.6623	yes	no
P25586	KRR1_YEAST	No assigned EC number	0.5475	0.7771	0.8386	yes	no
O74777	KRR1_SCHPO	No assigned EC number	0.5559	0.8064	0.8409	yes	no
Q54UU6	KRR1_DICDI	No assigned EC number	0.5036	0.7038	0.6417	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		341
COG1094		194	COG1094, COG1094, Predicted RNA-binding protein (c	1e-37
PRK13763		180	PRK13763, PRK13763, putative RNA-processing protei	3e-07
TIGR03665		172	TIGR03665, arCOG04150, arCOG04150 universal archae	5e-07

>gnl\|CDD\|224019 COG1094, COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only]	Back alignment and domain information

 Score =  133 bits (336), Expect = 1e-37
 Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 2/136 (1%)

Query: 45  GMLEVSSFSTLFPQYREKYLQEAWPMVKGALKE-YGVSCELNLVEGSMTVSTTRKTRDPY 103
              E SS +   P+ R   L   W  VK A++E  GV   ++   GS+T+ TTRKT DP 
Sbjct: 3   EFAEKSSEAVKIPKDRIGVLIGKWGEVKKAIEEKTGVKLRIDSKTGSVTIRTTRKTEDPL 62

Query: 104 IIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER-FVKRRQHLVGPNSS 162
            ++KARD+++ + R  P  +A+K+L+D+   ++I + ++V        + +  ++G    
Sbjct: 63  ALLKARDVVKAIGRGFPPEKALKLLEDDYYLEVIDLKDVVTLSGDHLRRIKGRIIGREGK 122

Query: 163 TLKALEILTGCYILVQ 178
           T +A+E LTG YI V 
Sbjct: 123 TRRAIEELTGVYISVY 138

Length = 194

>gnl\|CDD\|237494 PRK13763, PRK13763, putative RNA-processing protein; Provisional	Back alignment and domain information

>gnl\|CDD\|211858 TIGR03665, arCOG04150, arCOG04150 universal archaeal KH domain protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		341
KOG2874		356	consensus rRNA processing protein [Translation, ri	100.0
COG1094		194	Predicted RNA-binding protein (contains KH domains	100.0
KOG3273		252	consensus Predicted RNA-binding protein Pno1p inte	100.0
PRK13763		180	putative RNA-processing protein; Provisional	99.95
TIGR03665		172	arCOG04150 arCOG04150 universal archaeal KH domain	99.94
cd02395		120	SF1_like-KH Splicing factor 1 (SF1) K homology RNA	96.83
PF13014		43	KH_3: KH domain	96.38
cd02393		61	PNPase_KH Polynucleotide phosphorylase (PNPase) K	96.01
KOG1588		259	consensus RNA-binding protein Sam68 and related KH	95.66
cd00105		64	KH-I K homology RNA-binding domain, type I. KH bin	95.57
TIGR03319		514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	95.49
smart00322		69	KH K homology RNA-binding domain.	95.41
PF00013		60	KH_1: KH domain syndrome, contains KH motifs.; Int	95.39
cd02394		62	vigilin_like_KH K homology RNA-binding domain_vigi	95.13
KOG2193		584	consensus IGF-II mRNA-binding protein IMP, contain	94.91
PRK12704		520	phosphodiesterase; Provisional	94.85
PRK00106		535	hypothetical protein; Provisional	94.47
PRK13763		180	putative RNA-processing protein; Provisional	94.26
PF13083		73	KH_4: KH domain; PDB: 3GKU_B.	94.21
cd02396		65	PCBP_like_KH K homology RNA-binding domain, PCBP_l	93.65
KOG1676		600	consensus K-homology type RNA binding proteins [RN	93.61
PRK12705		508	hypothetical protein; Provisional	92.81
cd02414		77	jag_KH jag_K homology RNA-binding domain. The KH d	92.65
KOG2193		584	consensus IGF-II mRNA-binding protein IMP, contain	92.17
COG5176		269	MSL5 Splicing factor (branch point binding protein	91.99
COG1847		208	Jag Predicted RNA-binding protein [General functio	88.4
PRK01064		78	hypothetical protein; Provisional	87.73
cd02134		61	NusA_KH NusA_K homology RNA-binding domain (KH). N	87.52
PRK02821		77	hypothetical protein; Provisional	87.41
PRK00468		75	hypothetical protein; Provisional	87.41
TIGR03665		172	arCOG04150 arCOG04150 universal archaeal KH domain	87.35
cd02393		61	PNPase_KH Polynucleotide phosphorylase (PNPase) K	87.16
cd02409		68	KH-II KH-II (K homology RNA-binding domain, type I	86.38
COG1837		76	Predicted RNA-binding protein (contains KH domain)	85.22
TIGR03591		684	polynuc_phos polyribonucleotide nucleotidyltransfe	80.76
PF00013		60	KH_1: KH domain syndrome, contains KH motifs.; Int	80.13

>KOG2874 consensus rRNA processing protein [Translation, ribosomal structure and biogenesis; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=9.7e-109  Score=780.72  Aligned_cols=298  Identities=66%  Similarity=1.028  Sum_probs=279.0

Q ss_pred             cccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCcceeeeeeeecCchhHHHHHHhhhhHHHHHhhcccEEEEEcccCe
Q 019435           11 KKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGS   90 (341)
Q Consensus        11 ~~~~~~~~~~kpwd~~~~id~wk~~~f~~edn~~g~~eessF~vlfPkyRe~yLKe~W~~Ikk~Le~~~l~i~LDl~eGs   90 (341)
                      .+++.+|..++|||++++||+|+++.|+.+|||+||+|+|||+||||+||++||+++|+.|.++|++|+|.|.|||.+|+
T Consensus        18 ~~~k~~~e~~k~~~~~~~~d~wki~~Fs~edn~~g~~EeSSfatlFPKYREkYlke~wp~v~raL~e~~i~c~lDL~egs   97 (356)
T KOG2874|consen   18 ENKKPKPETDKPWDPDDNIDMWKIEKFSKEDNPHGFLEESSFATLFPKYREKYLKECWPLVERALDEHHIKCVLDLVEGS   97 (356)
T ss_pred             hhcccccccCCCCCCCCcchhhcccccCcccCccchhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHhcCcceEEeeccce
Confidence            35677899999999998899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCChHHHHhHHHHHHHHHcCCChHHHHHhhcccceeEEEeecccccCchhhhhhhccccCCCCchhHHHHHh
Q 019435           91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEIL  170 (341)
Q Consensus        91 V~VrTt~kT~DP~~IiKArD~IkAIaRGF~~EqAlkLLeDD~~~DIIdI~~lv~nke~f~RrrgRIIG~~GkTkkaIE~L  170 (341)
                      |+|+||++|||||+|++|||||++++||||++||++||+||++||||+|+++|+|+++|++||+||||+||.|++|||+|
T Consensus        98 m~V~TtRkT~DPyIiikArdlIKLlaRsVp~eqAvkiLqDev~CdiIkIgn~V~nkerFvKRRqRLiGpng~TLKAlelL  177 (356)
T KOG2874|consen   98 MTVKTTRKTRDPYIIIKARDLIKLLARSVPFEQAVKILQDEVACDIIKIGNLVRNKERFVKRRQRLIGPNGSTLKALELL  177 (356)
T ss_pred             eEEeecccccCceeeeeHHHHHHHHHcCCCHHHHHHHHhhccceeeeehhhhhccHHHHHHHHHHhcCCCchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchhhHH----------------------------------HHHHHhhhhcCccccccCcccccccccccccccccccc
Q 019435          171 TGCYILVQ----------------------------------ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS  216 (341)
Q Consensus       171 T~~yI~Vq----------------------------------~LmiKreL~kd~~l~~e~W~rflP~fkkk~~~~~k~~~  216 (341)
                      |+|||+||                                  +|||||||++||+|+|||||||||+|+++|++++|+++
T Consensus       178 T~CYilVqG~TVsaiGpfkGlkevr~IV~DcM~NiHPiY~IK~LmiKRel~kd~~l~ne~W~rfLP~fkkknv~k~K~~K  257 (356)
T KOG2874|consen  178 TNCYILVQGNTVSAIGPFKGLKEVRKIVEDCMKNIHPIYNIKTLMIKRELAKDPELANEDWSRFLPQFKKKNVKKRKPKK  257 (356)
T ss_pred             hhcEEEeeCcEEEeecCcchHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcChhhccccHHHHhHHhhhhhhhhccccc
Confidence            99999999                                  99999999999999999999999999999999999866


Q ss_pred             -ccCCCCCCCCCCCCCchhhhhhhccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC----Cchh
Q 019435          217 -KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQN----SCEA  291 (341)
Q Consensus       217 -~~kk~ytpfpp~~~~~k~D~~lesGeyFl~~~~k~~~~~~~~~~kq~~~~~~~~~~r~~~~~~p~e~~~~~----~~~~  291 (341)
                       +.||+||||||+|++||||+|||||||||+++++++++++|+.++|+++..+++++|+++|+||+|.+...    ...+
T Consensus       258 ~~~kk~ytpfPp~q~~sKiD~eleSGEYFl~~~~k~~kK~~e~~Ekq~e~~~er~~~r~k~fi~peE~~~~~~~~~~~~~  337 (356)
T KOG2874|consen  258 VKGKKEYTPFPPAQPPSKIDKELESGEYFLRDEEKSRKKMQEKKEKQAEKRKERQEERMKAFIPPEEESRKPSNKKKEAS  337 (356)
T ss_pred             ccCCCCCCCCCCCcCcchhhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccccccCCCCC
Confidence             45899999999999999999999999999999999999999999999999999999999999999987644    3334


Q ss_pred             hcccchHHHHHHHHHHHHHHH
Q 019435          292 EDKTNDVAAMAKSLKEKAKKL  312 (341)
Q Consensus       292 ~~~~~~~~~~~~~~k~k~~~~  312 (341)
                      +..++|+..    ++.|++++
T Consensus       338 ~~~~i~~~~----~k~k~~ka  354 (356)
T KOG2874|consen  338 TETKIDVLS----IKAKLKKA  354 (356)
T ss_pred             CcchHHHHH----HHHhhhhc
Confidence            444444433    45665554

>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]	Back alignment and domain information

>KOG3273 consensus Predicted RNA-binding protein Pno1p interacting with Nob1p and involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK13763 putative RNA-processing protein; Provisional	Back alignment and domain information

>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein	Back alignment and domain information

>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH)	Back alignment and domain information

>PF13014 KH_3: KH domain	Back alignment and domain information

>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH)	Back alignment and domain information

>KOG1588 consensus RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification]	Back alignment and domain information

>cd00105 KH-I K homology RNA-binding domain, type I	Back alignment and domain information

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF	Back alignment and domain information

>smart00322 KH K homology RNA-binding domain	Back alignment and domain information

>PF00013 KH_1: KH domain syndrome, contains KH motifs	Back alignment and domain information

>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like	Back alignment and domain information

>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]	Back alignment and domain information

>PRK12704 phosphodiesterase; Provisional	Back alignment and domain information

>PRK00106 hypothetical protein; Provisional	Back alignment and domain information

>PRK13763 putative RNA-processing protein; Provisional	Back alignment and domain information

>PF13083 KH_4: KH domain; PDB: 3GKU_B	Back alignment and domain information

>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like	Back alignment and domain information

>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]	Back alignment and domain information

>PRK12705 hypothetical protein; Provisional	Back alignment and domain information

>cd02414 jag_KH jag_K homology RNA-binding domain	Back alignment and domain information

>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]	Back alignment and domain information

>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification]	Back alignment and domain information

>COG1847 Jag Predicted RNA-binding protein [General function prediction only]	Back alignment and domain information

>PRK01064 hypothetical protein; Provisional	Back alignment and domain information

>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH)	Back alignment and domain information

>PRK02821 hypothetical protein; Provisional	Back alignment and domain information

>PRK00468 hypothetical protein; Provisional	Back alignment and domain information

>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein	Back alignment and domain information

>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH)	Back alignment and domain information

>cd02409 KH-II KH-II (K homology RNA-binding domain, type II)	Back alignment and domain information

>COG1837 Predicted RNA-binding protein (contains KH domain) [General function prediction only]	Back alignment and domain information

>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase	Back alignment and domain information

>PF00013 KH_1: KH domain syndrome, contains KH motifs	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		341
2e3u_A		219	Crystal Structure Analysis Of Dim2p From Pyrococcus		7e-04

>pdb|2E3U|A Chain A, Crystal Structure Analysis Of Dim2p From Pyrococcus Horikoshii Ot3 Length = 219

Back alignment and structure

Iteration: 1

Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 21/91 (23%), Positives = 50/91 (54%), Gaps = 2/91 (2%) Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 148 G + +++T++T DP + KARD++ + R +A ++L++ +II + +++ E+ Sbjct: 74 GEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEK 133 Query: 149 --FVKRRQHLVGPNSSTLKALEILTGCYILV 177 + R ++G T + +E ++G + V Sbjct: 134 NALPRVRGRIIGRKGRTRQIIEEMSGASVSV 164

PyMOL of 2e3u

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		341
2e3u_A		219	PH-DIM2P, hypothetical protein PH1566; PRE-ribosom	6e-34
1tua_A		191	Hypothetical protein APE0754; structural genomics,	2e-30
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	6e-04

>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Length = 219	Back alignment and structure

 Score =  123 bits (310), Expect = 6e-34
 Identities = 39/219 (17%), Positives = 80/219 (36%), Gaps = 43/219 (19%)

Query: 16  KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
                K ++   N D   VE  D         +   +    P+ R   L       K  +
Sbjct: 5   FEKLMKKFENV-NKDGEIVEDED---EWEEFFKQEEYVK-IPKDRIAVLIGKKGQTKKEI 59

Query: 76  -KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
            K       ++   G + +++T++T DP  + KARD++  + R     +A ++L++    
Sbjct: 60  EKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYL 119

Query: 135 DIIKIGNLVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILVQ-------------- 178
           +II + +++   E+    + R  ++G    T + +E ++G  + V               
Sbjct: 120 EIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQIE 179

Query: 179 ---------------------ILMVKKELEKDPALANEN 196
                                +   KK+LE + A+  EN
Sbjct: 180 IAKTAIEKLARGSPHGSVYRYLERRKKDLELEGAMYYEN 218

PyMOL of 2e3u

>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Length = 191	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		341
1tua_A		191	Hypothetical protein APE0754; structural genomics,	100.0
2e3u_A		219	PH-DIM2P, hypothetical protein PH1566; PRE-ribosom	99.96
2jvz_A		164	KH type-splicing, FAR upstream element-binding pro	98.07
1j4w_A		174	FUSE binding protein; single-stranded DNA binding	98.02
2anr_A		178	Neuro-oncological ventral antigen 1; protein-RNA c	97.99
3krm_A		163	Insulin-like growth factor 2 mRNA-binding protein	97.83
2jzx_A		160	Poly(RC)-binding protein 2; PCBP2, KH domains, RNA	97.42
2bl5_A		140	MGC83862 protein, quaking protein; STAR proteins,	96.65
1k1g_A		131	SF1-BO isoform; splicing, branch point sequence, p	96.56
2opv_A		85	KHSRP protein; KH domain, RNA binding protein, KSR	95.97
1dtj_A		76	RNA-binding neurooncological ventral antigen 2; KH	95.93
2yqr_A		119	KIAA0907 protein; structure genomics, KH domain, s	95.84
1ec6_A		87	RNA-binding protein NOVA-2; KH domain, alpha-beta	95.34
2qnd_A		144	FMR1 protein; KH domain, eukaryotic KH domains, ta	95.26
1vig_A		71	Vigilin; RNA-binding protein, ribonucleoprotein; N	95.25
1we8_A		104	Tudor and KH domain containing protein; structural	95.19
1x4m_A		94	FAR upstream element binding protein 1; KH domain,	95.1
2p2r_A		76	Poly(RC)-binding protein 2; protein-DNA complex, R	94.95
1x4n_A		92	FAR upstream element binding protein 1; KH domain,	94.82
2ctm_A		95	Vigilin; K homology type I domain, RNA-binding, ce	94.68
2ctl_A		97	Vigilin; K homology type I domain, RNA-binding, ce	94.61
2hh2_A		107	KH-type splicing regulatory protein; KH-RNA bindin	94.6
2cte_A		94	Vigilin; K homology type I domain, RNA-binding, ce	94.59
1zzk_A		82	Heterogeneous nuclear ribonucleoprotein K; KH domi	94.54
2ctk_A		104	Vigilin; K homology type I domain, RNA-binding, ce	94.51
1wvn_A		82	Poly(RC)-binding protein 1; KH domain, RNA binding	94.44
1j5k_A		89	Heterogeneous nuclear ribonucleoprotein K; single-	93.92
2hh3_A		106	KH-type splicing regulatory protein; KH-RNA bindin	93.54
2axy_A		73	Poly(RC)-binding protein 2; protein-DNA complex, D	93.35
2dgr_A		83	Ring finger and KH domain-containing protein 1; st	93.33
2opv_A		85	KHSRP protein; KH domain, RNA binding protein, KSR	93.15
2cpq_A		91	FragIle X mental retardation syndrome related prot	92.31
1dtj_A		76	RNA-binding neurooncological ventral antigen 2; KH	91.99
2cte_A		94	Vigilin; K homology type I domain, RNA-binding, ce	91.52
2p2r_A		76	Poly(RC)-binding protein 2; protein-DNA complex, R	90.1
2jzx_A		160	Poly(RC)-binding protein 2; PCBP2, KH domains, RNA	89.6
1ec6_A		87	RNA-binding protein NOVA-2; KH domain, alpha-beta	89.44
1we8_A		104	Tudor and KH domain containing protein; structural	89.31
1wvn_A		82	Poly(RC)-binding protein 1; KH domain, RNA binding	89.23
3krm_A		163	Insulin-like growth factor 2 mRNA-binding protein	88.27
1j5k_A		89	Heterogeneous nuclear ribonucleoprotein K; single-	87.89
2ctj_A		95	Vigilin; K homology type I domain, RNA-binding, ce	87.06
1x4m_A		94	FAR upstream element binding protein 1; KH domain,	86.55
2hh3_A		106	KH-type splicing regulatory protein; KH-RNA bindin	86.15
1x4n_A		92	FAR upstream element binding protein 1; KH domain,	84.87
3u1k_A		630	Polyribonucleotide nucleotidyltransferase 1, MITO;	84.87
3u1k_A		630	Polyribonucleotide nucleotidyltransferase 1, MITO;	83.92
2dgr_A		83	Ring finger and KH domain-containing protein 1; st	81.69
1zzk_A		82	Heterogeneous nuclear ribonucleoprotein K; KH domi	81.57
2pt7_G		152	HP1451, hypothetical protein; ATPase, protein-prot	81.51
2ctk_A		104	Vigilin; K homology type I domain, RNA-binding, ce	81.43
2axy_A		73	Poly(RC)-binding protein 2; protein-DNA complex, D	81.34
2cpq_A		91	FragIle X mental retardation syndrome related prot	81.07
2hh2_A		107	KH-type splicing regulatory protein; KH-RNA bindin	81.04
1vig_A		71	Vigilin; RNA-binding protein, ribonucleoprotein; N	80.12

>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1	Back alignment and structure

Probab=100.00  E-value=3.8e-39  Score=290.22  Aligned_cols=127  Identities=14%  Similarity=0.264  Sum_probs=124.0

Q ss_pred             eeeecCchhHHHHHHhhhhHHHHH-hhcccEEEEEcccCeEEEEcCCCCCChHHHHhHHHHHHHHHcCCChHHHHHhhcc
Q 019435           52 FSTLFPQYREKYLQEAWPMVKGAL-KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD  130 (341)
Q Consensus        52 F~vlfPkyRe~yLKe~W~~Ikk~L-e~~~l~i~LDl~eGsV~VrTt~kT~DP~~IiKArD~IkAIaRGF~~EqAlkLLeD  130 (341)
                      +.++||+||.+||++.|+.+++.| +++|++|+||+.+|+|+|+||+.|+||++++||+|||+||+|||+++||++||+|
T Consensus         6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~~Ll~D   85 (191)
T 1tua_A            6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLEE   85 (191)
T ss_dssp             EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGGGGST
T ss_pred             eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhhhcccC
Confidence            479999999999999999999999 5699999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEeeccc-ccCchhhhhhhccccCCCCchhHHHHHhhcchhhHH
Q 019435          131 EMQCDIIKIGNL-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ  178 (341)
Q Consensus       131 D~~~DIIdI~~l-v~nke~f~RrrgRIIG~~GkTkkaIE~LT~~yI~Vq  178 (341)
                      |++||+|+|+++ ++|++||+|++|||||++|+|+++||++|||||+|+
T Consensus        86 d~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~  134 (191)
T 1tua_A           86 DQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG  134 (191)
T ss_dssp             TEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC
T ss_pred             cceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc
Confidence            999999999999 689999999999999999999999999999999999

PyMOL of 1tua

>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B	Back alignment and structure

>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}	Back alignment and structure

>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1	Back alignment and structure

>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*	Back alignment and structure

>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}	Back alignment and structure

>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1	Back alignment and structure

>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}	Back alignment and structure

>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A	Back alignment and structure

>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A	Back alignment and structure

>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A	Back alignment and structure

>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1	Back alignment and structure

>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1	Back alignment and structure

>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}	Back alignment and structure

>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A	Back alignment and structure

>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A	Back alignment and structure

>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A	Back alignment and structure

>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*	Back alignment and structure

>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}	Back alignment and structure

>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A	Back alignment and structure

>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}	Back alignment and structure

>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1	Back alignment and structure

>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}	Back alignment and structure

>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A	Back alignment and structure

>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1	Back alignment and structure

>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A	Back alignment and structure

>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}	Back alignment and structure

>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}	Back alignment and structure

>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A	Back alignment and structure

>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}	Back alignment and structure

>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*	Back alignment and structure

>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		341
d1tuaa2		104	d.51.1.1 (A:85-188) Hypothetical protein APE0754 {	5e-09

>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Length = 104	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Hypothetical protein APE0754
species: Aeropyrum pernix [TaxId: 56636]

 Score = 50.9 bits (122), Expect = 5e-09
 Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 135 DIIKIGNLVRNKERFVKR-RQHLVGPNSSTLKALEILTGCYILVQ 178
            ++ +  +V + +  +KR +  ++G      + +E +T  YI V 
Sbjct: 5   VVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG 49

PyMOL of d1tuaa2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		341
d1tuaa2		104	Hypothetical protein APE0754 {Aeropyrum pernix [Ta	99.46
d1tuaa1		84	Hypothetical protein APE0754 {Aeropyrum pernix [Ta	99.23
d1k1ga_		122	RNA splicing factor 1 {Human (Homo sapiens) [TaxId	96.82
d2bl5a1		134	Quaking protein A (Xqua) {African clawed frog (Xen	96.6
d2je6i3		69	Exosome complex RNA-binding protein 1, ECR1 {Sulfo	96.19
d2z0sa2		87	Exosome complex RNA-binding protein 1, ECR1 {Aerop	96.02
d1j4wa2		71	Far upstream binding element, FBP {Human (Homo sap	95.61
d1tuaa1		84	Hypothetical protein APE0754 {Aeropyrum pernix [Ta	95.38
d2ba0a3		84	Exosome complex RNA-binding protein 1, ECR1 {Archa	95.29
d1e3ha4		54	Polynucleotide phosphorylase/guanosine pentaphosph	95.09
d2ctma1		81	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	95.05
d2ctea1		81	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	94.94
d1dtja_		74	Neuro-oncological ventral antigen 2, nova-2, KH3 {	94.9
d1x4na1		79	Far upstream binding element, FBP {Mouse (Mus musc	94.85
d2ctla1		84	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	94.74
d1wvna1		70	Poly(RC)-binding protein 1 {Human (Homo sapiens) [	94.73
d1zzka1		75	HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}	94.71
d1viga_		71	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	94.64
d1j4wa1		74	Far upstream binding element, FBP {Human (Homo sap	94.47
d1x4ma1		81	Far upstream binding element, FBP {Mouse (Mus musc	94.42
d1we8a_		104	Tudor and KH domain containing protein, Tdrkh {Mou	94.24
d2ctka1		91	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	94.2
d2axya1		71	Poly(RC)-binding protein 2 {Human (Homo sapiens) [	93.6
d2je6i3		69	Exosome complex RNA-binding protein 1, ECR1 {Sulfo	93.47
d2cpqa1		78	Fragile X mental retardation syndrome related prot	93.31
d2z0sa2		87	Exosome complex RNA-binding protein 1, ECR1 {Aerop	91.45
d2cpqa1		78	Fragile X mental retardation syndrome related prot	91.41
d2ba0a3		84	Exosome complex RNA-binding protein 1, ECR1 {Archa	91.34
d2ctja1		82	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	90.48
d2ctfa1		90	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	85.59
d2ctka1		91	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	82.92
d1j4wa1		74	Far upstream binding element, FBP {Human (Homo sap	81.94

>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Hypothetical protein APE0754
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.46  E-value=1.5e-15  Score=123.69  Aligned_cols=67  Identities=18%  Similarity=0.428  Sum_probs=58.4

Q ss_pred             cceeEEEeecccccC-chhhhhhhccccCCCCchhHHHHHhhcchhhHH-------------------------------
Q 019435          131 EMQCDIIKIGNLVRN-KERFVKRRQHLVGPNSSTLKALEILTGCYILVQ-------------------------------  178 (341)
Q Consensus       131 D~~~DIIdI~~lv~n-ke~f~RrrgRIIG~~GkTkkaIE~LT~~yI~Vq-------------------------------  178 (341)
                      |++|+||||++++++ ++++.|.+|||||++|+|.++||.+|||+|.|+                               
T Consensus         1 d~~l~iidi~~~~~~~~~~l~R~~GrIIG~gGktik~Ie~~Tg~~I~I~d~~v~iig~~e~i~~A~~~Ie~li~~~e~g~   80 (104)
T d1tuaa2           1 DQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEYEVAIIGDYERAMAAKQAIEMLAEGRMHST   80 (104)
T ss_dssp             TEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECSSEEEEEEEHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             CceEEEEEHHHhhcccHHHHHHHhcceeCCCcHHHHHHHHHHCCeEEEeCCeEEEEECchhHHHHHHHHHHHHcCCCccH
Confidence            689999999999975 567888899999999999999999999999998                               


Q ss_pred             ---HH-HHHhhhhcCccccccCccc
Q 019435          179 ---IL-MVKKELEKDPALANENWDR  199 (341)
Q Consensus       179 ---~L-miKreL~kd~~l~~e~W~r  199 (341)
                         .| ..++||..+..|  ++|+|
T Consensus        81 VY~~le~~~~elk~~~~~--~~w~~  103 (104)
T d1tuaa2          81 VYRHLERIMREIKRRERL--KMWAR  103 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH--Hhhcc
Confidence               34 678888877776  66876

PyMOL of d1tuaa2

>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]}	Back information, alignment and structure

>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]}	Back information, alignment and structure

>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure