Citrus Sinensis ID: 019441

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
MEMNGSKREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKCLAGDGINMGSWVWVTP
ccEEEEEccccEEEEEcccccEEEEccccccccccccccccEEEEEcccccEEEEEEccccEEEEEEccccEEEEEcccccccccccccccccccEEEEccccccEEEEEEccccEEEEEccccEEEEEccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEcccEEEEEccccccccccccccEEEcEEEEccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccccccEEcccEEEcccccccccEEEccEEEcccccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccccccccEEEEccc
ccEcccccccccEEEEccccEEEEEcccccccccccccccccccHHccccEEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEEHHHccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEEEEccccccccccccccccccccEEEccccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccEEcccc
memngskreenekmeECKETVVYMWgylpgtspekspilspiparlcggdswkdvcgggcgfalatsesgklitwgsaddegqsyltsgkhgetpepfplpteaSVVKAAAGWAHCVSVTeagevytwgwrecvpsakvtrdfgsagsfqkdstgkqsalpteqappsdkrageEVVKrrktssareesenpasgdefftlspclvtlnpgvkitkvaaggRHTLILSDmgqvwgwgyggegqlglgsrikmvptphlipclehaasgkdrpllvrqgsvnssgkagRSYVKEIACggrhsavvtDAGALLTFGWGLYGQRMAKCLagdginmgsWVWVTP
memngskreenekmeECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGsfqkdstgkqsalpteqappsdkrageevvkrrktssareesenpasgdefftlsPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGsvnssgkagRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKCLAGDGINMGSWVWVTP
MEMNGSkreenekmeeckeTVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMgqvwgwgyggegqlglgSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKCLAGDGINMGSWVWVTP
*****************KETVVYMWGYLPGT*****PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWG***************************ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVT*********************************************************FFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAA*********************RSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKCLAGDGINMGSWVWV**
MEMNGSKREENEKMEECKETVVYMWGYLPGTSPE******PIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTR******************LPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAK************VWVTP
***************ECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGS*************************************************GDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQG*********RSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKCLAGDGINMGSWVWVTP
*****SKREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKCLAGDGINMGSWVWVT*
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MEMNGSKREENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMAKCLAGDGINMGSWVWVTP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query341 2.2.26 [Sep-21-2011]
Q9FN03 440 Ultraviolet-B receptor UV no no 0.651 0.504 0.291 9e-15
Q15034 1050 Probable E3 ubiquitin-pro yes no 0.715 0.232 0.263 5e-12
Q5GLZ8 1057 Probable E3 ubiquitin-pro no no 0.712 0.229 0.254 1e-10
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.712 0.229 0.251 5e-10
Q9UII4 1024 E3 ISG15--protein ligase no no 0.281 0.093 0.363 6e-10
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.692 0.223 0.255 8e-10
Q8BTU7377 RCC1 domain-containing pr no no 0.351 0.318 0.328 3e-09
Q6NXM2 531 RCC1 and BTB domain-conta no no 0.680 0.436 0.239 4e-09
Q4R828376 RCC1 domain-containing pr N/A no 0.460 0.417 0.272 5e-09
Q99LJ7 551 RCC1 and BTB domain-conta no no 0.533 0.330 0.262 1e-08
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score = 81.3 bits (199), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 120/281 (42%), Gaps = 59/281 (20%)

Query: 55  VCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEAS------VVK 108
           +   G   ++A      + +WG  +D GQ       HG+  E  P PT+ S      +V 
Sbjct: 19  IISAGASHSVALLSGDIVCSWGRGED-GQL-----GHGDA-EDRPSPTQLSALDGHQIVS 71

Query: 109 AAAGWAHCVSVTEAG-EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE---- 163
              G  H V+ +++G EVY+WGW           DFG  G    +S+   + LP +    
Sbjct: 72  VTCGADHTVAYSQSGMEVYSWGWG----------DFGRLG--HGNSSDLFTPLPIKALHG 119

Query: 164 ----QAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAA 219
               Q    D       ++    S  R ++     GD   +L P  +    G++I  VAA
Sbjct: 120 IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA 179

Query: 220 GGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGS 279
           G  HT  +++ G ++GWG+G  G LGLG R     T  L+P                   
Sbjct: 180 GAEHTAAVTEDGDLYGWGWGRYGNLGLGDR-----TDRLVP-----------------ER 217

Query: 280 VNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
           V S+G    S V   ACG RH+  V+ +GAL T+GW  YGQ
Sbjct: 218 VTSTGGEKMSMV---ACGWRHTISVSYSGALYTYGWSKYGQ 255
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q9UII4|HERC5_HUMAN E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q8BTU7|RCCD1_MOUSE RCC1 domain-containing protein 1 OS=Mus musculus GN=Rccd1 PE=2 SV=2 Back     alignment and function description
>sp|Q6NXM2|RCBT1_MOUSE RCC1 and BTB domain-containing protein 1 OS=Mus musculus GN=Rcbtb1 PE=2 SV=1 Back     alignment and function description
>sp|Q4R828|RCCD1_MACFA RCC1 domain-containing protein 1 OS=Macaca fascicularis GN=RCCD1 PE=2 SV=1 Back     alignment and function description
>sp|Q99LJ7|RCBT2_MOUSE RCC1 and BTB domain-containing protein 2 OS=Mus musculus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query341
255586057 478 Ran GTPase binding protein, putative [Ri 0.912 0.650 0.664 1e-122
449448608 485 PREDICTED: probable E3 ubiquitin-protein 0.938 0.659 0.626 1e-115
449519078 472 PREDICTED: probable E3 ubiquitin-protein 0.900 0.650 0.645 1e-115
356523185 528 PREDICTED: LOW QUALITY PROTEIN: probable 0.879 0.568 0.658 1e-115
356566559 525 PREDICTED: probable E3 ubiquitin-protein 0.873 0.567 0.668 1e-114
359482088 514 PREDICTED: probable E3 ubiquitin-protein 0.923 0.612 0.644 1e-113
255566472 476 Serine/threonine-protein kinase Nek8, pu 0.926 0.663 0.629 1e-112
356539897 480 PREDICTED: probable E3 ubiquitin-protein 0.932 0.662 0.622 1e-111
224138854 467 predicted protein [Populus trichocarpa] 0.891 0.650 0.647 1e-110
225449388 484 PREDICTED: X-linked retinitis pigmentosa 0.929 0.654 0.616 1e-110
>gi|255586057|ref|XP_002533695.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223526406|gb|EEF28690.1| Ran GTPase binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/343 (66%), Positives = 259/343 (75%), Gaps = 32/343 (9%)

Query: 1   MEMNGSKREENEKMEEC-KETVVYMWGYLPGTSPEKSPILSPIPARLCGG---DSWKDVC 56
           M +NG+  EE+ KMEEC K T VYM GYLPG SPEKSPILSPI   +  G   DSWKDVC
Sbjct: 1   MAINGNGEEEDVKMEECCKVTAVYMCGYLPGISPEKSPILSPIQVPISDGGGFDSWKDVC 60

Query: 57  GGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHC 116
            GGCGFA+A S SG LITWGS D+EGQSYLTSGKHGE PEPFPLP EASVVKAAAGWAHC
Sbjct: 61  SGGCGFAMAISGSGNLITWGSTDEEGQSYLTSGKHGEIPEPFPLPCEASVVKAAAGWAHC 120

Query: 117 VSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPS-------- 168
           VSVTE GEV+TWGW+ECVPS K+          Q+D+TGKQ+AL   +   S        
Sbjct: 121 VSVTETGEVFTWGWKECVPSVKI---------IQRDNTGKQNALLQTEKVSSRSEGSSLT 171

Query: 169 --------DKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAG 220
                    KR G+E+VKRR+ S  +E+ E+  SGDEFFT+ P +VTL PGV+IT VAAG
Sbjct: 172 RGTVLNSDSKRTGDEIVKRRRVSPTKEDFESSPSGDEFFTVLPLMVTLAPGVRITNVAAG 231

Query: 221 GRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSV 280
           GRHTL LSDMGQVWGWGYGGEGQLGLGSRIKMV +PHLIPC++ +ASGKDR L+V QG++
Sbjct: 232 GRHTLALSDMGQVWGWGYGGEGQLGLGSRIKMVSSPHLIPCIDASASGKDRSLIVHQGNL 291

Query: 281 NSSGKAGR---SYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
             S +A     SYVKEIACGGRHSA+VTD GALLTFGWGLYGQ
Sbjct: 292 TPSAQASTFPGSYVKEIACGGRHSAIVTDTGALLTFGWGLYGQ 334

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449448608|ref|XP_004142058.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449519078|ref|XP_004166562.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356523185|ref|XP_003530222.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC3-like [Glycine max] Back     alignment and taxonomy information
>gi|356566559|ref|XP_003551498.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|359482088|ref|XP_002271900.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC3-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255566472|ref|XP_002524221.1| Serine/threonine-protein kinase Nek8, putative [Ricinus communis] gi|223536498|gb|EEF38145.1| Serine/threonine-protein kinase Nek8, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356539897|ref|XP_003538429.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|224138854|ref|XP_002322918.1| predicted protein [Populus trichocarpa] gi|222867548|gb|EEF04679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225449388|ref|XP_002282470.1| PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query341
TAIR|locus:2099986 488 AT3G55580 [Arabidopsis thalian 0.873 0.610 0.533 1.6e-92
UNIPROTKB|E1B8U7377 RCCD1 "Uncharacterized protein 0.322 0.291 0.316 2.3e-11
UNIPROTKB|E2R5W9313 RCCD1 "Uncharacterized protein 0.237 0.258 0.355 3.6e-11
UNIPROTKB|G3V2I3374 RCCD1 "RCC1 domain-containing 0.249 0.227 0.347 9.1e-10
UNIPROTKB|A6NED2376 RCCD1 "RCC1 domain-containing 0.249 0.226 0.347 9.3e-10
RGD|1309901378 Rccd1 "RCC1 domain containing 0.313 0.283 0.313 1.3e-09
UNIPROTKB|F1RMH6382 RCCD1 "Uncharacterized protein 0.196 0.175 0.402 0.00065
TAIR|locus:2163986440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.310 0.240 0.292 2.5e-09
MGI|MGI:2444156377 Rccd1 "RCC1 domain containing 0.076 0.068 0.653 3.6e-08
UNIPROTKB|F1N7C1 1016 HERC6 "Uncharacterized protein 0.258 0.086 0.320 8.3e-08
TAIR|locus:2099986 AT3G55580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 839 (300.4 bits), Expect = 1.6e-92, Sum P(2) = 1.6e-92
 Identities = 167/313 (53%), Positives = 207/313 (66%)

Query:    21 VVYMWGYLPGTSPEKSPILSPIPARLCGG--DSWKDVCGGGCGFALATSESGKLITWGSA 78
             VVYMWGYLPG SP++SP++SP+  ++      SWKDV GGGCGFA+AT+ESGKLITWGS 
Sbjct:    32 VVYMWGYLPGASPQRSPLMSPVEVKIPPAVESSWKDVSGGGCGFAMATAESGKLITWGST 91

Query:    79 DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAK 138
             DD GQSY+TSGKHGETPEPFPLP E  V KA AGWAHCV+VTE  +VYTWGWREC+P+ +
Sbjct:    92 DDLGQSYVTSGKHGETPEPFPLPPEVCVQKAEAGWAHCVAVTENQQVYTWGWRECIPTGR 151

Query:   139 V---------TRDFG-SAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREE 188
             V          R+   S       S GK+S+  T      + R G E  K+R+ S +++ 
Sbjct:   152 VFGQVDGDSCERNISFSTEQVSSSSQGKKSSGGTSSQV--EGRGGGEPTKKRRISPSKQA 209

Query:   189 SENPASGDEF-FTLSPCLVTLNPGVKITKVAAGGRHTLILSDMXXXXXXXXXXXXXXXXX 247
             +EN +  D    +  PCLV+L PGV+I  VAAGGRHTL LSD+                 
Sbjct:   210 AENSSQSDNIDLSALPCLVSLAPGVRIVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLG 269

Query:   248 SRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDA 307
             SR+++V +PH IPC+E ++ GK     V   SV   G+   SYVK+IACGGRHSAV+TD 
Sbjct:   270 SRVRLVSSPHPIPCIEPSSYGKATSSGVNMSSVVQCGRVLGSYVKKIACGGRHSAVITDT 329

Query:   308 GALLTFGWGLYGQ 320
             GALLTFGWGLYGQ
Sbjct:   330 GALLTFGWGLYGQ 342
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|E1B8U7 RCCD1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R5W9 RCCD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G3V2I3 RCCD1 "RCC1 domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A6NED2 RCCD1 "RCC1 domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1309901 Rccd1 "RCC1 domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RMH6 RCCD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2444156 Rccd1 "RCC1 domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1N7C1 HERC6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-11
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-09
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-08
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-07
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 4e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 4e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-04
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-04
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 0.001
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.002
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 63/286 (22%), Positives = 88/286 (30%), Gaps = 102/286 (35%)

Query: 56  CGGGCGFALATSESGKLITWGSADDEGQSYLTSGK---------------HGETPEPFPL 100
           CGG    +L     G L +WG  DD                            TP   P 
Sbjct: 111 CGGN--HSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPG 168

Query: 101 PTEAS----VVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGK 156
            + A     VVK A GW   V +T  G VY+WG                           
Sbjct: 169 GSSAKSHLRVVKLACGWEISVILTADGRVYSWG--------------------------- 201

Query: 157 QSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITK 216
                         R GE      K S        P                 P   I +
Sbjct: 202 ------------TFRCGELGQGSYKNSQKTSIQFTP--------------LKVPKKAIVQ 235

Query: 217 VAAGGRHTLILSDMGQVWGWGYGGEGQLGLG--SRIKMVPTPHLIPCLEHAASGKDRPLL 274
           +AAG  H + L++ G+V+GWG   +GQLG     R+K+V    L+       +       
Sbjct: 236 LAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVV---LVGDPFAIRN------- 285

Query: 275 VRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQ 320
                           +K +ACG  HS  + + G +  +G  ++GQ
Sbjct: 286 ----------------IKYVACGKDHSLALDEDGEIYAWGVNIFGQ 315

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 341
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427 443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427 443 consensus Uncharacterized conserved protein, conta 100.0
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.93
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.92
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.9
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.73
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.31
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.22
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.21
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.21
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.07
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.9
KOG3669 705 consensus Uncharacterized conserved protein, conta 93.55
KOG3669 705 consensus Uncharacterized conserved protein, conta 91.49
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 85.56
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 84.57
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 83.87
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-35  Score=273.63  Aligned_cols=236  Identities=25%  Similarity=0.411  Sum_probs=194.1

Q ss_pred             chhhhccccccCcccEEEeccC-CCCCCCC--C----CCCCCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCC
Q 019441            7 KREENEKMEECKETVVYMWGYL-PGTSPEK--S----PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSAD   79 (341)
Q Consensus         7 ~~~~~~~~~~~~~g~v~~wG~n-~g~~g~~--~----~~~~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~   79 (341)
                      .|.+...++++++|.||.||.. .+.++..  +    -..+++|+.++ ...|+++++ |..|.++|+++|++|+||++ 
T Consensus       182 ~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~-G~dh~i~lt~~G~vy~~Gs~-  258 (476)
T COG5184         182 ACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAA-GADHLIALTNEGKVYGWGSN-  258 (476)
T ss_pred             ecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chheeeecc-CCceEEEEecCCcEEEecCC-
Confidence            5888999999999999999996 4443332  2    22346777777 578999999 77899999999999999999 


Q ss_pred             CCCCCcccCCCCCCCCeecCCCCC-CcEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCccccCCCCCCcccCCCCCCC
Q 019441           80 DEGQSYLTSGKHGETPEPFPLPTE-ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQS  158 (341)
Q Consensus        80 ~~GqlG~~~~~~~~~p~~i~~~~~-~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~  158 (341)
                      ..||||....+....+.++..+.. ..|+.|+||.+|+++|+++|++|+||.|.+||||.. ++.               
T Consensus       259 qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~-~~~---------------  322 (476)
T COG5184         259 QKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAG-SDG---------------  322 (476)
T ss_pred             cccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccC-ccc---------------
Confidence            999999988777666666654443 447999999999999999999999999999999965 220               


Q ss_pred             CCCcccCCCCCccccchhhcceeeeccccCCCCCCCCCCcccccceeeecCCCCeEEEEEcCCCeEEEEecCCcEEEEeC
Q 019441          159 ALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGY  238 (341)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~  238 (341)
                                                          ......+.|.....+.+..|.+|+++..|+++|..+|.||+||+
T Consensus       323 ------------------------------------~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr  366 (476)
T COG5184         323 ------------------------------------EIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGR  366 (476)
T ss_pred             ------------------------------------ccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecC
Confidence                                                11123566777777777789999999999999999999999999


Q ss_pred             CCCCccCCCCCC-CccCCCeeecccccccCCCCCceEeecCcccccCCCCCCcEEEEeeCCCeEEEEeCCCCEEEeeCCC
Q 019441          239 GGEGQLGLGSRI-KMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGL  317 (341)
Q Consensus       239 n~~GqLG~~~~~-~~~~~P~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~V~~G~~hs~~lt~~G~v~~wG~n~  317 (341)
                      +..+|||...+. ..++.|..+...                          ..+.+|+||..|+++.+.+|+||.||+++
T Consensus       367 ~~~~qlg~~~~~~~~~~~~~~ls~~--------------------------~~~~~v~~gt~~~~~~t~~gsvy~wG~ge  420 (476)
T COG5184         367 GDRGQLGIQEEITIDVSTPTKLSVA--------------------------IKLEQVACGTHHNIARTDDGSVYSWGWGE  420 (476)
T ss_pred             CccccccCcccceeecCCccccccc--------------------------cceEEEEecCccceeeccCCceEEecCch
Confidence            999999998842 445566665533                          56999999999999999999999999999


Q ss_pred             CCCCCc
Q 019441          318 YGQRMA  323 (341)
Q Consensus       318 ~GQLG~  323 (341)
                      +||||.
T Consensus       421 ~gnlG~  426 (476)
T COG5184         421 HGNLGN  426 (476)
T ss_pred             hhhccC
Confidence            999964

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 3e-07
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 3e-07
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 3e-07
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 8e-07
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 3e-05
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure 
Iteration: 1

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 107/268 (39%), Gaps = 60/268 (22%)
Query: 69  SGKLI-TWGSADDEGQSYLTSGKHGETPEPFPLPTEAS------VVKAAAGWAHCVSVTE 121
           SG ++ +WG  +D GQ       HG+  E  P PT+ S      +V    G  H V+ ++
Sbjct: 21  SGDIVCSWGRGED-GQL-----GHGDA-EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQ 73
Query: 122 AG-EVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE--------QAPPSDKRA 172
           +G EVY+WGW           DFG  G    +S+   + LP +        Q    D   
Sbjct: 74  SGMEVYSWGWG----------DFGRLG--HGNSSDLFTPLPIKALHGIRIKQIACGDSHC 121
Query: 173 GEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMXX 232
               ++    S  R ++     GD   +L P  +    G++I  VAAG  HT  +++   
Sbjct: 122 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181
Query: 233 XXXXXXXXXXXXXXXSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVK 292
                           R     T  L+P         +R        V S+G    S V 
Sbjct: 182 LYGWGWGRYGNLGLGDR-----TDRLVP---------ER--------VTSTGGEKMSMV- 218
Query: 293 EIACGGRHSAVVTDAGALLTFGWGLYGQ 320
             ACG RH+  V+ +GAL T+GW  YGQ
Sbjct: 219 --ACGWRHTISVSYSGALYTYGWSKYGQ 244
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-34
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 4e-25
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 8e-23
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-13
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 5e-11
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 3e-08
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-05
3of7_A 473 Regulator of chromosome condensation; beta-propell 2e-34
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-26
3of7_A473 Regulator of chromosome condensation; beta-propell 7e-23
3of7_A 473 Regulator of chromosome condensation; beta-propell 3e-20
3of7_A473 Regulator of chromosome condensation; beta-propell 4e-04
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-32
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 9e-25
3mvd_K423 Regulator of chromosome condensation; protein-DNA 4e-21
3mvd_K423 Regulator of chromosome condensation; protein-DNA 9e-14
3mvd_K423 Regulator of chromosome condensation; protein-DNA 4e-11
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-10
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 2e-07
3mvd_K423 Regulator of chromosome condensation; protein-DNA 7e-04
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-23
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-21
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 6e-21
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-20
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-20
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-17
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-15
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 6e-11
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-10
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-10
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-09
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-07
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-23
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-22
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-22
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-20
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-17
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-15
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-11
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-10
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-08
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-07
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 6e-07
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-15
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 7e-11
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-10
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-09
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-07
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-07
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-04
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 5e-04
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 6e-04
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
 Score =  129 bits (327), Expect = 2e-34
 Identities = 58/307 (18%), Positives = 92/307 (29%), Gaps = 77/307 (25%)

Query: 22  VYMWGY-----L-PGTSPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALATSESGKLIT 74
           VY +G      L   TS E S     +P ++   +    V  G     AL  ++ G++  
Sbjct: 80  VYSFGCNDEGALGRDTSVEGS---EMVPGKVELQEKVVQVSAGDSHTAAL--TDDGRVFL 134

Query: 75  WGSA-DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWREC 133
           WGS  D+ G   L      ++  P  +  +  VVK A+G  H V +T  G++YT G  E 
Sbjct: 135 WGSFRDNNGVIGLLEPMK-KSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGE- 192

Query: 134 VPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPA 193
                     G  G                           E+   R      E    P 
Sbjct: 193 ---------QGQLGR------------------------VPELFANRGGRQGLERLLVPK 219

Query: 194 SGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMV 253
                  +          V+      G   T  +S  G V+G+G     QLG     +  
Sbjct: 220 C------VMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGT-ESC 272

Query: 254 PTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTF 313
             P  +   +++                             + G  H+  +   G   + 
Sbjct: 273 FIPQNLTSFKNSTKS----------------------WVGFSGGQHHTVCMDSEGKAYSL 310

Query: 314 GWGLYGQ 320
           G   YG+
Sbjct: 311 GRAEYGR 317
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query341
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3of7_A 473 Regulator of chromosome condensation; beta-propell 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.9
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 94.79
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 86.49
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 86.39
1suu_A312 DNA gyrase subunit A; topoisomerase,DNA gyrase, be 85.03
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 84.6
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 80.45
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=2.3e-49  Score=378.03  Aligned_cols=310  Identities=23%  Similarity=0.297  Sum_probs=244.9

Q ss_pred             hhhhccccccCcccEEEeccC-CCCCCCCCCCCC--CceeeccCCCceeEEEecCCceeEEEeCCC-CEEEecCCCCCCC
Q 019441            8 REENEKMEECKETVVYMWGYL-PGTSPEKSPILS--PIPARLCGGDSWKDVCGGGCGFALATSESG-KLITWGSADDEGQ   83 (341)
Q Consensus         8 ~~~~~~~~~~~~g~v~~wG~n-~g~~g~~~~~~~--p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G-~vy~wG~n~~~Gq   83 (341)
                      |-..+.++|++++.||+||.| .|+||.......  |+++..+...+|++|+| |..|+++|++++ +||+||.| .+||
T Consensus        23 ~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~-G~~ht~al~~~gg~v~~wG~n-~~Gq  100 (406)
T 4d9s_A           23 AGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC-GADHTVAYSQSGMEVYSWGWG-DFGR  100 (406)
T ss_dssp             ECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE-CSSEEEEEETTTTEEEEEECC-GGGT
T ss_pred             cCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEe-CcceEEEEECCCCEEEEEcCC-CCcC
Confidence            556788999999999999999 899997654444  44455556779999999 668999999886 99999999 9999


Q ss_pred             CcccCCCCCCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEecCCCCcCCCCccccCCCCCCcccCCCCCCCCCCcc
Q 019441           84 SYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE  163 (341)
Q Consensus        84 lG~~~~~~~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (341)
                      ||.++......|.+++.+...+|++|+||..|+++|+++|+||+||.|.+||||........   .+... .......+.
T Consensus       101 LG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~---~p~~v-~~~~~~~i~  176 (406)
T 4d9s_A          101 LGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSL---VPQKI-QAFEGIRIK  176 (406)
T ss_dssp             TCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEE---EEEEC-GGGTTCCEE
T ss_pred             CCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcc---cceEe-cccCCCcEE
Confidence            99998877778888888888899999999999999999999999999999999976532111   00000 001112233


Q ss_pred             cCCCCCccccchhhcceeeeccccCCCCC-CCCCCcccccceeeecCCCCeEEEEEcCCCeEEEEecCCcEEEEeCCCCC
Q 019441          164 QAPPSDKRAGEEVVKRRKTSSAREESENP-ASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEG  242 (341)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~v~~~~~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~G  242 (341)
                      .+.|... +...+...+.++.|+.+.... ..++......|..+..+.+.+|++|+||.+|+++|+++|+||+||.|.+|
T Consensus       177 ~va~G~~-hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~G  255 (406)
T 4d9s_A          177 MVAAGAE-HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG  255 (406)
T ss_dssp             EEEECSS-EEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTS
T ss_pred             EEecCCC-eEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCC
Confidence            3444333 444556667777777654433 34555667788888888778999999999999999999999999999999


Q ss_pred             ccCCCCCCCccCCCeeecccc-----cccCCCCCceEeec-CcccccCCCC----------------------CCcEEEE
Q 019441          243 QLGLGSRIKMVPTPHLIPCLE-----HAASGKDRPLLVRQ-GSVNSSGKAG----------------------RSYVKEI  294 (341)
Q Consensus       243 qLG~~~~~~~~~~P~~i~~~~-----~~~~g~~~~~~~~~-~~~~~~~~~~----------------------~~~i~~V  294 (341)
                      |||.+.. .....|++++.+.     .++||..|+++++. |+++.++...                      ..+|++|
T Consensus       256 qlG~g~~-~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v  334 (406)
T 4d9s_A          256 QLGHGDL-EDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV  334 (406)
T ss_dssp             TTCSSSC-CCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEE
T ss_pred             CCCCCCC-cCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEE
Confidence            9999876 4566788886544     46899999999987 7776655432                      1479999


Q ss_pred             eeCCCeEEEEeCCCCEEEeeCCCCCCCCccc
Q 019441          295 ACGGRHSAVVTDAGALLTFGWGLYGQRMAKC  325 (341)
Q Consensus       295 ~~G~~hs~~lt~~G~v~~wG~n~~GQLG~~~  325 (341)
                      +||.+|+++|+++|+||+||+|.+||||++.
T Consensus       335 a~G~~hs~alt~~G~v~~wG~n~~GqLG~g~  365 (406)
T 4d9s_A          335 SCGWRHTLAVTERNNVFAWGRGTNGQLGIGE  365 (406)
T ss_dssp             EECSSEEEEEETTSCEEEEECCTTSTTCSSS
T ss_pred             EeCCCeEEEEeCCCCEEEecCCCCCccCCCC
Confidence            9999999999999999999999999998743
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 341
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-14
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 5e-13
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-11
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 7e-11
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-04
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 6e-08
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 2e-05
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (171), Expect = 3e-14
 Identities = 58/276 (21%), Positives = 101/276 (36%), Gaps = 14/276 (5%)

Query: 63  ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEA 122
              ++E G ++T G   D GQ  L      E  +P  +     VV+A AG  H V ++++
Sbjct: 8   RSHSTEPGLVLTLGQ-GDVGQLGLGENVM-ERKKPALVSIPEDVVQAEAGGMHTVCLSKS 65

Query: 123 GEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKT 182
           G+VY++G  +      + RD    GS       +      + +      A      R   
Sbjct: 66  GQVYSFGCNDE---GALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFL 122

Query: 183 SSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSDMGQVWGWGYGGEG 242
             +  ++       E    S   V +   V + KVA+G  H ++L+  G ++  G G +G
Sbjct: 123 WGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQG 182

Query: 243 QLGLGSRIKMVPTPHLIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSA 302
           QLG    +                 G +R L+ +   + S G  G    ++  CG   + 
Sbjct: 183 QLGRVPELFANRGGR---------QGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTF 233

Query: 303 VVTDAGALLTFGWGLYGQRMAKCLAGDGINMGSWVW 338
            ++  G +  FG   Y Q          I      +
Sbjct: 234 AISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSF 269
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query341
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.94
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.57
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 95.16
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-42  Score=321.76  Aligned_cols=287  Identities=20%  Similarity=0.238  Sum_probs=192.7

Q ss_pred             hhhhccccccCcccEEEeccC-CCCCCCCCC-CCCCceeeccCCCceeEEEecCCceeEEEeCCCCEEEecCCCCCCCCc
Q 019441            8 REENEKMEECKETVVYMWGYL-PGTSPEKSP-ILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSY   85 (341)
Q Consensus         8 ~~~~~~~~~~~~g~v~~wG~n-~g~~g~~~~-~~~p~~~~~~~~~~i~~i~~~g~~h~~~lt~~G~vy~wG~n~~~GqlG   85 (341)
                      ...-|..+++++|+||+||.| .||||.... ...+.|..++...+|++|+| |..|+++|+++|+||+||.| .+||||
T Consensus         3 ~~~~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~ia~-G~~h~~al~~~G~vy~wG~n-~~GQLG   80 (401)
T d1a12a_           3 VKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEA-GGMHTVCLSKSGQVYSFGCN-DEGALG   80 (401)
T ss_dssp             CCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEE-CSSEEEEEETTSCEEEEECC-TTSTTC
T ss_pred             ceeeEEEEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCCCeEEEEe-CCCEEEEEeCCCEEEEEeCC-CCCCCC
Confidence            344577899999999999999 999997643 23455555555568999999 66899999999999999999 999999


Q ss_pred             ccCCCCCCCCeecCCCCCCcEEEEeecCCeeEEEecCCcEEEecCCCCcC------------------------------
Q 019441           86 LTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVP------------------------------  135 (341)
Q Consensus        86 ~~~~~~~~~p~~i~~~~~~~i~~Va~G~~hs~~lt~~G~vy~wG~n~~gq------------------------------  135 (341)
                      +++......|.+.......+|++|+||..|+++++++|+||+||.+...+                              
T Consensus        81 ~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g  160 (401)
T d1a12a_          81 RDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASG  160 (401)
T ss_dssp             SCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEEC
T ss_pred             cccccccccccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEec
Confidence            98776666666666555666777777777777777777777776554333                              


Q ss_pred             -----------------------CCCccccCCCCCC------------cccCCCCCCCCCCcccCCCCCccccchhhcce
Q 019441          136 -----------------------SAKVTRDFGSAGS------------FQKDSTGKQSALPTEQAPPSDKRAGEEVVKRR  180 (341)
Q Consensus       136 -----------------------lG~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (341)
                                             ||...........            +............+..+.|... ....+...+
T Consensus       161 ~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~-~~~~l~~~g  239 (401)
T d1a12a_         161 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY-FTFAISHEG  239 (401)
T ss_dssp             SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETT-EEEEEETTC
T ss_pred             ccceeeeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCC-eEEEEecCC
Confidence                                   3322111000000            0000000000000111111111 122233334


Q ss_pred             eeeccccCCCCCC-CCCCcccccceeeecCC--CCeEEEEEcCCCeEEEEecCCcEEEEeCCCCCccCCCCCCCccCCCe
Q 019441          181 KTSSAREESENPA-SGDEFFTLSPCLVTLNP--GVKITKVAAGGRHTLILSDMGQVWGWGYGGEGQLGLGSRIKMVPTPH  257 (341)
Q Consensus       181 ~~~~~~~~~~~~~-~~~~~~~~~p~~v~~~~--~~~i~~Ia~G~~h~~aLt~~G~vy~wG~n~~GqLG~~~~~~~~~~P~  257 (341)
                      .+..++....... .........+..+..+.  ...+++|++|..|+++|+++|+||+||.|.+||||.+........|+
T Consensus       240 ~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~  319 (401)
T d1a12a_         240 HVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPT  319 (401)
T ss_dssp             CEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEE
T ss_pred             eEeeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCE
Confidence            4444443332221 22222233333333322  25799999999999999999999999999999999998766677788


Q ss_pred             eecccccccCCCCCceEeecCcccccCCCCCCcEEEEeeCCCeEEEEeCCCCEEEeeCCCCCCCCc
Q 019441          258 LIPCLEHAASGKDRPLLVRQGSVNSSGKAGRSYVKEIACGGRHSAVVTDAGALLTFGWGLYGQRMA  323 (341)
Q Consensus       258 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~V~~G~~hs~~lt~~G~v~~wG~n~~GQLG~  323 (341)
                      .|+.+                          ..|++|+||.+|+++|+++|+||+||+|.+||||+
T Consensus       320 ~i~~~--------------------------~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~  359 (401)
T d1a12a_         320 LISRL--------------------------PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGT  359 (401)
T ss_dssp             ECCSS--------------------------SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCS
T ss_pred             EcCCC--------------------------CCeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCC
Confidence            88754                          45999999999999999999999999999999965
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure