Citrus Sinensis ID: 019507

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
MDTKSVEAENGSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVSYDQ
cccccccccccccccccccccHHHHHHHHHHHcccccccccccEEEEEEccEEccccccccccccccccccccEEEEEEEEccEEEcHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccEEEEEEEEEEcccccccccccccEEEEEEEccccHHHHccccEEEEEEEcccccccccccccccHHHHHHHHHHHHccccEEEEEccccEEEcccccEEEEEEccEEEEccccccccccHHHHHHHHHHHHccccccccEEEEEEccHHHHHcccEEEEEcccccEEEEEEEccEEcccccccHHHHHHHHHHHHHHHcccccccccccccc
ccccccEEEccccEEEEEEccHHHHHHHHHHcccccccccccccEEEEEcccEccHHHcEEEEEcccEEcccccEEEEEEEcccEEEHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccEEEEEEEEcccccccccccccccEEEEEEccccHHHHHcccEEEEEcccccccccHHcccHHHHHHHHHHHHHHHccccEEEEEccccEEEEccccEEEEEEccEEEcccHHHHHHcHHcHHHHHHHHHHHcHHccccEEEEEEccHHHEEEHcHEEEcccccEEEEEEEEcccEEccccccHHHHHHHHHHHHHHccccccccccccccc
mdtksveaengsefkahmFSSSSELLQKLQEKWSsvkkkpypamyssifggiildpammvipiddhmvhrghgvfdTAIILNGYLYELDVHLDRFLRSAVSarisspfprsTLRSILVQLTAAsqckkgtlrfwltagpgdfllspagcptsafYAVVidddfsqckEGVKVitssipmkprlfATVKNVNYLPNVLAKMEaedkgasasiwidedgyvaegpnvnvafithdkelvLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLpllaitvwdeqpigdgnvGELTMALSDLLWEdmvagpetqrhcvsydq
mdtksveaengsefkahmfssSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSarisspfprsTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVitssipmkprlFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKlveqgrlksvktanLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVSYDQ
MDTKSVEAENGSEFKAHMFssssellqklqekWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVSYDQ
***************************************PYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAG************
***********************E******************AMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVSYD*
**********GSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVSYDQ
*****VEAENGSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVSYD*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDTKSVEAENGSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVSYDQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query340 2.2.26 [Sep-21-2011]
Q8L493373 Branched-chain-amino-acid yes no 0.870 0.793 0.595 1e-101
O29329290 Putative branched-chain-a yes no 0.732 0.858 0.280 2e-21
Q58414288 Putative branched-chain-a yes no 0.735 0.868 0.272 4e-20
P54692283 D-alanine aminotransferas no no 0.8 0.961 0.287 4e-19
O07597282 D-alanine aminotransferas yes no 0.794 0.957 0.260 5e-14
Q92B90289 D-alanine aminotransferas yes no 0.747 0.878 0.265 3e-13
Q8W0Z7555 Branched-chain-amino-acid no no 0.752 0.461 0.264 2e-12
P19938283 D-alanine aminotransferas N/A no 0.770 0.925 0.254 3e-12
Q71Z49289 D-alanine aminotransferas yes no 0.747 0.878 0.254 4e-12
O86428307 Branched-chain-amino-acid yes no 0.758 0.840 0.260 1e-11
>sp|Q8L493|BCAL3_ARATH Branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=At5g57850 PE=2 SV=1 Back     alignment and function desciption
 Score =  367 bits (942), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/297 (59%), Positives = 225/297 (75%), Gaps = 1/297 (0%)

Query: 43  AMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSA 102
           AMYSS+  GI  DPA MV+P+DDHMVHRGHGVFDTA+I+NGYLYELD HLDR LRSA  A
Sbjct: 77  AMYSSVVDGITTDPAAMVLPLDDHMVHRGHGVFDTALIINGYLYELDQHLDRILRSASMA 136

Query: 103 RISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDD 162
           +I  PF R T++ IL+Q  + S C+ G+LR+WL+AGPGDFLLSP+ C     YA+VI  +
Sbjct: 137 KIPLPFDRETIKRILIQTVSVSGCRDGSLRYWLSAGPGDFLLSPSQCLKPTLYAIVIKTN 196

Query: 163 FSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEG 222
           F+    GVKV+TSSIP+KP  FATVK+VNYLPNVL++MEAE KGA A IW+ +DG++AEG
Sbjct: 197 FAINPIGVKVVTSSIPIKPPEFATVKSVNYLPNVLSQMEAEAKGAYAGIWVCKDGFIAEG 256

Query: 223 PNVNVAFITH-DKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKG 281
           PN+NVAF+ +  KELV+P FD +LSGCTAKR L LA +LV +G LK+VK  ++TV++ K 
Sbjct: 257 PNMNVAFVVNGGKELVMPRFDNVLSGCTAKRTLTLAEQLVSKGILKTVKVMDVTVEDGKK 316

Query: 282 AAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVSY 338
           A EMM +GS +P+  +  WDE+ IG+G  G +  AL DLL EDM +GP + R  V Y
Sbjct: 317 ADEMMLIGSGIPIRPVIQWDEEFIGEGKEGPIAKALLDLLLEDMRSGPPSVRVLVPY 373

Arabidopsis thaliana (taxid: 3702)
>sp|O29329|ILVE_ARCFU Putative branched-chain-amino-acid aminotransferase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ilvE PE=3 SV=1 Back     alignment and function description
>sp|Q58414|ILVE_METJA Putative branched-chain-amino-acid aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=ilvE PE=3 SV=1 Back     alignment and function description
>sp|P54692|DAAA_BACLI D-alanine aminotransferase OS=Bacillus licheniformis GN=dat PE=3 SV=1 Back     alignment and function description
>sp|O07597|DAAA_BACSU D-alanine aminotransferase OS=Bacillus subtilis (strain 168) GN=dat PE=3 SV=1 Back     alignment and function description
>sp|Q92B90|DAAA_LISIN D-alanine aminotransferase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=dat PE=3 SV=1 Back     alignment and function description
>sp|Q8W0Z7|BCAL1_ARATH Branched-chain-amino-acid aminotransferase-like protein 1 OS=Arabidopsis thaliana GN=At3g05190 PE=2 SV=1 Back     alignment and function description
>sp|P19938|DAAA_BACYM D-alanine aminotransferase OS=Bacillus sp. (strain YM-1) GN=dat PE=1 SV=2 Back     alignment and function description
>sp|Q71Z49|DAAA_LISMF D-alanine aminotransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dat PE=3 SV=1 Back     alignment and function description
>sp|O86428|ILVE_PSEAE Branched-chain-amino-acid aminotransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=ilvE PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
359493821351 PREDICTED: branched-chain-amino-acid ami 0.976 0.945 0.822 1e-163
255564585345 D-alanine aminotransferase, putative [Ri 0.979 0.965 0.814 1e-161
388513425348 unknown [Lotus japonicus] 0.985 0.962 0.791 1e-159
388508724344 unknown [Medicago truncatula] 0.988 0.976 0.794 1e-157
217073220343 unknown [Medicago truncatula] 0.985 0.976 0.791 1e-155
224117116338 predicted protein [Populus trichocarpa] 0.988 0.994 0.815 1e-155
449456615348 PREDICTED: branched-chain-amino-acid ami 0.973 0.951 0.795 1e-154
363808216331 uncharacterized protein LOC100798871 [Gl 0.873 0.897 0.824 1e-139
356546858321 PREDICTED: LOW QUALITY PROTEIN: branched 0.870 0.922 0.799 1e-132
357127771328 PREDICTED: branched-chain-amino-acid ami 0.935 0.969 0.688 1e-131
>gi|359493821|ref|XP_003634673.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Vitis vinifera] gi|302142961|emb|CBI20256.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 273/332 (82%), Positives = 304/332 (91%)

Query: 7   EAENGSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDH 66
           E E  +EF+ H+FSSSSEL++KL EKW S K+KPYPAMYSS+FGGIILDPAMMVIPIDDH
Sbjct: 19  EVERDTEFRVHVFSSSSELVEKLHEKWDSGKEKPYPAMYSSVFGGIILDPAMMVIPIDDH 78

Query: 67  MVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQC 126
           MVHRGHGVFDT+IILNGYLYELD HLDRFLRSA  A+ISSPFPRSTLRSILVQLTAAS+C
Sbjct: 79  MVHRGHGVFDTSIILNGYLYELDAHLDRFLRSAAKAKISSPFPRSTLRSILVQLTAASRC 138

Query: 127 KKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSSIPMKPRLFAT 186
            +GTLRFWLT+GPG+FLLSP+GCPTSAFYAVVI D   Q +EGVKVITS+IPMK  LFAT
Sbjct: 139 TEGTLRFWLTSGPGNFLLSPSGCPTSAFYAVVIKDKIYQHREGVKVITSTIPMKSPLFAT 198

Query: 187 VKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILS 246
            KNVNYLPNVL+ MEAE+KGA ASIW+DE+GY+AEGPNVNVAFITHDKEL+LPFFDKILS
Sbjct: 199 TKNVNYLPNVLSVMEAEEKGAFASIWVDEEGYIAEGPNVNVAFITHDKELILPFFDKILS 258

Query: 247 GCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIG 306
           GCTAKRLLELAPKLVEQGRLK V+TAN+TV+EAKG+AEMMYVGSTLPLL I +WDE+PIG
Sbjct: 259 GCTAKRLLELAPKLVEQGRLKDVRTANVTVEEAKGSAEMMYVGSTLPLLPIVMWDEKPIG 318

Query: 307 DGNVGELTMALSDLLWEDMVAGPETQRHCVSY 338
           DG VGELTMALSDLLW+DMVAGP+T R  V+Y
Sbjct: 319 DGLVGELTMALSDLLWDDMVAGPKTHRLLVTY 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255564585|ref|XP_002523288.1| D-alanine aminotransferase, putative [Ricinus communis] gi|223537501|gb|EEF39127.1| D-alanine aminotransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388513425|gb|AFK44774.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388508724|gb|AFK42428.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|217073220|gb|ACJ84969.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224117116|ref|XP_002317480.1| predicted protein [Populus trichocarpa] gi|222860545|gb|EEE98092.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449456615|ref|XP_004146044.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Cucumis sativus] gi|449520477|ref|XP_004167260.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|363808216|ref|NP_001242488.1| uncharacterized protein LOC100798871 [Glycine max] gi|255641780|gb|ACU21159.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356546858|ref|XP_003541839.1| PREDICTED: LOW QUALITY PROTEIN: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|357127771|ref|XP_003565551.1| PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
TAIR|locus:2174433373 ADCL "4-amino-4-deoxychorismat 0.870 0.793 0.595 3.9e-92
TIGR_CMR|CHY_0515293 CHY_0515 "branched-chain amino 0.729 0.846 0.270 1e-22
UNIPROTKB|P54692283 dat "D-alanine aminotransferas 0.8 0.961 0.287 1.5e-21
TIGR_CMR|BA_1416298 BA_1416 "branched-chain amino 0.738 0.842 0.281 2.4e-21
TIGR_CMR|BA_1849299 BA_1849 "branched-chain amino 0.770 0.876 0.260 8.3e-19
UNIPROTKB|O07597282 dat "D-alanine aminotransferas 0.794 0.957 0.260 3e-17
TIGR_CMR|SPO_3604286 SPO_3604 "D-amino acid aminotr 0.711 0.846 0.267 5.5e-15
TIGR_CMR|BA_2256291 BA_2256 "D-amino acid aminotra 0.785 0.917 0.240 7.8e-15
UNIPROTKB|Q92B90289 dat "D-alanine aminotransferas 0.744 0.875 0.278 2.7e-14
TIGR_CMR|BA_5472290 BA_5472 "D-amino acid aminotra 0.732 0.858 0.261 1.4e-13
TAIR|locus:2174433 ADCL "4-amino-4-deoxychorismate lyase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 177/297 (59%), Positives = 225/297 (75%)

Query:    43 AMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSA 102
             AMYSS+  GI  DPA MV+P+DDHMVHRGHGVFDTA+I+NGYLYELD HLDR LRSA  A
Sbjct:    77 AMYSSVVDGITTDPAAMVLPLDDHMVHRGHGVFDTALIINGYLYELDQHLDRILRSASMA 136

Query:   103 RISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDD 162
             +I  PF R T++ IL+Q  + S C+ G+LR+WL+AGPGDFLLSP+ C     YA+VI  +
Sbjct:   137 KIPLPFDRETIKRILIQTVSVSGCRDGSLRYWLSAGPGDFLLSPSQCLKPTLYAIVIKTN 196

Query:   163 FSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEG 222
             F+    GVKV+TSSIP+KP  FATVK+VNYLPNVL++MEAE KGA A IW+ +DG++AEG
Sbjct:   197 FAINPIGVKVVTSSIPIKPPEFATVKSVNYLPNVLSQMEAEAKGAYAGIWVCKDGFIAEG 256

Query:   223 PNVNVAFITHD-KELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKG 281
             PN+NVAF+ +  KELV+P FD +LSGCTAKR L LA +LV +G LK+VK  ++TV++ K 
Sbjct:   257 PNMNVAFVVNGGKELVMPRFDNVLSGCTAKRTLTLAEQLVSKGILKTVKVMDVTVEDGKK 316

Query:   282 AAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVSY 338
             A EMM +GS +P+  +  WDE+ IG+G  G +  AL DLL EDM +GP + R  V Y
Sbjct:   317 ADEMMLIGSGIPIRPVIQWDEEFIGEGKEGPIAKALLDLLLEDMRSGPPSVRVLVPY 373
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0008153 "para-aminobenzoic acid biosynthetic process" evidence=IDA
GO:0008696 "4-amino-4-deoxychorismate lyase activity" evidence=IGI
GO:0046654 "tetrahydrofolate biosynthetic process" evidence=IGI
GO:0009570 "chloroplast stroma" evidence=IDA
TIGR_CMR|CHY_0515 CHY_0515 "branched-chain amino acid aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P54692 dat "D-alanine aminotransferase" [Bacillus licheniformis (taxid:1402)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1416 BA_1416 "branched-chain amino acid aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1849 BA_1849 "branched-chain amino acid aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|O07597 dat "D-alanine aminotransferase" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3604 SPO_3604 "D-amino acid aminotransferase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2256 BA_2256 "D-amino acid aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q92B90 dat "D-alanine aminotransferase" [Listeria innocua Clip11262 (taxid:272626)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5472 BA_5472 "D-amino acid aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L493BCAL3_ARATHNo assigned EC number0.59590.87050.7935yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
PLN02845336 PLN02845, PLN02845, Branched-chain-amino-acid amin 0.0
cd01559249 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychor 9e-73
cd00449256 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependen 8e-58
cd01558270 cd01558, D-AAT_like, D-Alanine aminotransferase (D 3e-42
pfam01063231 pfam01063, Aminotran_4, Aminotransferase class IV 2e-36
COG0115284 COG0115, IlvE, Branched-chain amino acid aminotran 8e-36
PRK06680286 PRK06680, PRK06680, D-amino acid aminotransferase; 7e-34
PRK08320288 PRK08320, PRK08320, branched-chain amino acid amin 3e-25
TIGR01121276 TIGR01121, D_amino_aminoT, D-amino acid aminotrans 5e-24
TIGR01122298 TIGR01122, ilvE_I, branched-chain amino acid amino 2e-23
PRK12479299 PRK12479, PRK12479, branched-chain amino acid amin 3e-22
PRK07849292 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyas 4e-21
cd01557279 cd01557, BCAT_beta_family, BCAT_beta_family: Branc 1e-17
PRK12400290 PRK12400, PRK12400, D-amino acid aminotransferase; 1e-15
PRK06606306 PRK06606, PRK06606, branched-chain amino acid amin 1e-15
PRK07650283 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyas 3e-15
TIGR01123313 TIGR01123, ilvE_II, branched-chain amino acid amin 1e-08
PRK06092268 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyas 3e-08
TIGR03461261 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase 4e-08
PRK13357356 PRK13357, PRK13357, branched-chain amino acid amin 9e-08
PRK07544292 PRK07544, PRK07544, branched-chain amino acid amin 4e-04
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like protein Back     alignment and domain information 
 Score =  563 bits (1452), Expect = 0.0
 Identities = 208/330 (63%), Positives = 258/330 (78%), Gaps = 1/330 (0%)

Query: 11  GSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHR 70
           GS  K     S++E++Q+LQ KWS  KK+ + AMYSS+ GGI  DPA MVIP+DDHMVHR
Sbjct: 7   GSRTKVPPLLSAAEMIQRLQSKWSDAKKQNFGAMYSSVVGGITTDPAAMVIPLDDHMVHR 66

Query: 71  GHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGT 130
           GHGVFDTA I +G+LYELD HLDRFLRSA  A+I  PF R+TLR IL+Q  AAS C+ G+
Sbjct: 67  GHGVFDTATIRDGHLYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTVAASGCRNGS 126

Query: 131 LRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQC-KEGVKVITSSIPMKPRLFATVKN 189
           LR+WL+AGPG F LSP+GC   AFYAVVI+D ++Q   EGVKV+TSS+P+KP  FATVK+
Sbjct: 127 LRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQDRPEGVKVVTSSVPIKPPQFATVKS 186

Query: 190 VNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKILSGCT 249
           VNYLPN L++MEAE++GA A IW+DE+G+VAEGPN+NVAF+T+D ELVLP FDKILSGCT
Sbjct: 187 VNYLPNALSQMEAEERGAFAGIWLDEEGFVAEGPNMNVAFLTNDGELVLPPFDKILSGCT 246

Query: 250 AKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGN 309
           A+R+LELAP+LV  G L+ VK   ++V+EAK A EMM +GS +P+L I  WD QPIGDG 
Sbjct: 247 ARRVLELAPRLVSPGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPIVSWDGQPIGDGK 306

Query: 310 VGELTMALSDLLWEDMVAGPETQRHCVSYD 339
           VG +T+AL DLL +DM +GP   R  V Y 
Sbjct: 307 VGPITLALHDLLLDDMRSGPPGVRTPVPYG 336

Length = 336
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate Back     alignment and domain information
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV) Back     alignment and domain information
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids Back     alignment and domain information
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV Back     alignment and domain information
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase Back     alignment and domain information
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase, group I Back     alignment and domain information
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate Back     alignment and domain information
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase, group II Back     alignment and domain information
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed Back     alignment and domain information
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase Back     alignment and domain information
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 340
PLN02845336 Branched-chain-amino-acid aminotransferase-like pr 100.0
PRK12479299 branched-chain amino acid aminotransferase; Provis 100.0
TIGR01122298 ilvE_I branched-chain amino acid aminotransferase, 100.0
PRK08320288 branched-chain amino acid aminotransferase; Review 100.0
PRK06606306 branched-chain amino acid aminotransferase; Valida 100.0
PRK06680286 D-amino acid aminotransferase; Reviewed 100.0
cd01558270 D-AAT_like D-Alanine aminotransferase (D-AAT_like) 100.0
PRK07650283 4-amino-4-deoxychorismate lyase; Provisional 100.0
PRK12400290 D-amino acid aminotransferase; Reviewed 100.0
PRK13356286 aminotransferase; Provisional 100.0
TIGR01121276 D_amino_aminoT D-amino acid aminotransferase. Spec 100.0
PRK07544292 branched-chain amino acid aminotransferase; Valida 100.0
PRK07849292 4-amino-4-deoxychorismate lyase; Provisional 100.0
PRK06092268 4-amino-4-deoxychorismate lyase; Reviewed 100.0
cd00449256 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes 100.0
TIGR03461261 pabC_Proteo aminodeoxychorismate lyase. Members of 100.0
cd01559249 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lya 100.0
TIGR01123313 ilvE_II branched-chain amino acid aminotransferase 100.0
PRK13357356 branched-chain amino acid aminotransferase; Provis 100.0
PLN03117355 Branched-chain-amino-acid aminotransferase; Provis 100.0
cd01557279 BCAT_beta_family BCAT_beta_family: Branched-chain 100.0
PLN02782403 Branched-chain amino acid aminotransferase 100.0
PRK09266266 hypothetical protein; Provisional 100.0
PLN02259388 branched-chain-amino-acid aminotransferase 2 100.0
PLN02883384 Branched-chain amino acid aminotransferase 100.0
COG0115284 IlvE Branched-chain amino acid aminotransferase/4- 100.0
KOG0975379 consensus Branched chain aminotransferase BCAT1, p 100.0
PF01063231 Aminotran_4: Aminotransferase class IV; InterPro: 100.0
PRK07546209 hypothetical protein; Provisional 100.0
PRK07101187 hypothetical protein; Provisional 100.0
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein Back     alignment and domain information 
Probab=100.00  E-value=1e-70  Score=528.45  Aligned_cols=329  Identities=62%  Similarity=1.050  Sum_probs=295.2

Q ss_pred             eecCCCccccccccChHHHHHHHHhhccCCCCCCccccccceeCCEEeCCCcceeccCCcccccccceeeeeeeeCCeec
Q 019507            7 EAENGSEFKAHMFSSSSELLQKLQEKWSSVKKKPYPAMYSSIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLY   86 (340)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G~~~   86 (340)
                      ++||++++--|+. +..++++||+++|.+++..+++|||.+|+||++++++++.|+++||||+||||+|||||+++|+++
T Consensus         4 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~v~~~~a~i~~~Drgl~~GdGvFETirv~~G~~~   82 (336)
T PLN02845          4 VVPGSRTKVPPLL-SAAEMIQRLQSKWSDAKKQNFGAMYSSVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIRDGHLY   82 (336)
T ss_pred             CCCCCCCcCCccc-cHHHHHHHHHhhhccccccceeeeeeEEECCEEccHHHCcccccccceeecceEEEEEEEECCEEc
Confidence            5799999888888 899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCCCc-
Q 019507           87 ELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQ-  165 (340)
Q Consensus        87 ~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~~~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~~~-  165 (340)
                      +|++|++||.+||+.|+|+.|++.+++++.+.+++++++..+++||++|++|.+++++.+..++.+++++.+.+.++.. 
T Consensus        83 ~le~Hl~RL~~Sa~~L~i~~p~~~~~l~~~i~~~i~~~~~~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~~~~~  162 (336)
T PLN02845         83 ELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTVAASGCRNGSLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQD  162 (336)
T ss_pred             CHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEcccccccc
Confidence            9999999999999999999888999999999999999888889999999999877776555555777777766544333 


Q ss_pred             CCCCcEEEEeeeecCCCCCCCccccCChhHHHHHHHHHHcCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCCCcc
Q 019507          166 CKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFDKIL  245 (340)
Q Consensus       166 ~~~gv~l~~~~~~~~~~~~~~~Kt~nyl~~~la~~eA~~~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~~iL  245 (340)
                      ..+|+++.++++++.++.++++||+||+.+++++++|+++|+||+||+|++|+|+||+++||||+.+|++|+||++++||
T Consensus       163 ~~~gv~l~~~~~~~~~~~~~~~Kt~nyl~~vla~~eA~~~G~deaLlln~~G~V~Egt~sNiF~v~~~~~l~TP~l~~iL  242 (336)
T PLN02845        163 RPEGVKVVTSSVPIKPPQFATVKSVNYLPNALSQMEAEERGAFAGIWLDEEGFVAEGPNMNVAFLTNDGELVLPPFDKIL  242 (336)
T ss_pred             ccCCeEEEEeeeeecCCccccchhhhhHHHHHHHHHHHHcCCCEEEEECCCCcEEEcCcceEEEEEECCEEEeCCCCCcC
Confidence            25799998888777666678999999999999999999999999999999999999999999666569999999998899


Q ss_pred             ccHHHHHHHHHhhhhhhCC--CcceEEEEeeCHHHHhccceeeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHHHH
Q 019507          246 SGCTAKRLLELAPKLVEQG--RLKSVKTANLTVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWE  323 (340)
Q Consensus       246 ~GItR~~ll~la~~~~~~G--~~~~v~E~~i~~~dL~~adEvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~~~  323 (340)
                      +||||+.||++|+++.+.|  +  +|+|+.++++||.+|||+|+|||++||+||.+||++.++.|++||+|++|++.|++
T Consensus       243 ~GItR~~vlela~~~~~~G~~i--~V~E~~i~~~eL~~AdEvFltnS~~gv~PV~~id~~~~~~g~~gp~t~~L~~~~~~  320 (336)
T PLN02845        243 SGCTARRVLELAPRLVSPGDLR--GVKQRKISVEEAKAADEMMLIGSGVPVLPIVSWDGQPIGDGKVGPITLALHDLLLD  320 (336)
T ss_pred             ccHHHHHHHHHHHhhhccCCce--EEEEEecCHHHHhcCCEEEEecCcccEEEEEEECCEECCCCCCCHHHHHHHHHHHH
Confidence            9999999999998742226  7  89999999999999999999999999999999999999988999999999999986


Q ss_pred             HhhcCCCCcceeccC
Q 019507          324 DMVAGPETQRHCVSY  338 (340)
Q Consensus       324 ~i~~~~~~~~~~~~~  338 (340)
                      ....+.-+.+.|+-|
T Consensus       321 ~~~~~~~~~~~~~~~  335 (336)
T PLN02845        321 DMRSGPPGVRTPVPY  335 (336)
T ss_pred             HHhcCCCccceeccC
Confidence            555554455566655

>PRK12479 branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I Back     alignment and domain information
>PRK08320 branched-chain amino acid aminotransferase; Reviewed Back     alignment and domain information
>PRK06606 branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>PRK06680 D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids Back     alignment and domain information
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>PRK12400 D-amino acid aminotransferase; Reviewed Back     alignment and domain information
>PRK13356 aminotransferase; Provisional Back     alignment and domain information
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase Back     alignment and domain information
>PRK07544 branched-chain amino acid aminotransferase; Validated Back     alignment and domain information
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional Back     alignment and domain information
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed Back     alignment and domain information
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV) Back     alignment and domain information
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase Back     alignment and domain information
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate Back     alignment and domain information
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II Back     alignment and domain information
>PRK13357 branched-chain amino acid aminotransferase; Provisional Back     alignment and domain information
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional Back     alignment and domain information
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate Back     alignment and domain information
>PLN02782 Branched-chain amino acid aminotransferase Back     alignment and domain information
>PRK09266 hypothetical protein; Provisional Back     alignment and domain information
>PLN02259 branched-chain-amino-acid aminotransferase 2 Back     alignment and domain information
>PLN02883 Branched-chain amino acid aminotransferase Back     alignment and domain information
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism] Back     alignment and domain information
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue Back     alignment and domain information
>PRK07546 hypothetical protein; Provisional Back     alignment and domain information
>PRK07101 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
3daa_A277 Crystallographic Structure Of D-Amino Acid Aminotra 2e-13
3lqs_A280 Complex Structure Of D-Amino Acid Aminotransferase 2e-13
1daa_A282 Crystallographic Structure Of D-Amino Acid Aminotra 3e-13
1wrv_A308 Crystal Structure Of T.Th.Hb8 Branched-Chain Amino 7e-13
5daa_A277 E177k Mutant Of D-Amino Acid Aminotransferase Compl 8e-13
1a0g_A282 L201a Mutant Of D-Amino Acid Aminotransferase Compl 1e-12
1g2w_A282 E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D 1e-12
3u0g_A328 Crystal Structure Of Branched-Chain Amino Acid Amin 4e-10
2y4r_A292 Crystal Structure Of 4-Amino-4-Deoxychorismate Lyas 9e-08
2zgi_A246 Crystal Structure Of Putative 4-Amino-4-Deoxychoris 7e-07
1a3g_A308 Branched-chain Amino Acid Aminotransferase From Esc 1e-04
1i1k_A309 Crystal Structure Of Eschelichia Coli Branched-chai 1e-04
3ht5_A368 Crystal Structure Of Ilve A Branched Chain Amino Ac 2e-04
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid Aminotransferase Inactivated By Pyridoxyl-D-Alanine Length = 277 Back     alignment and structure 
Iteration: 1

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 118/280 (42%), Gaps = 21/280 (7%)
Query: 47  SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISS 106
           +++   I+    + I  +D     G GV++   + NG ++ ++ H+DR   SA   RI+ 
Sbjct: 3   TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITI 62
Query: 107 PFPRSTLRSILVQLTAASQCKKGTLRFWLTAGPGDFLLSPAG--CPTSAFYAVVID---- 160
           P+ +     +L +L   ++   G + F +T G      SP     P +    V+I     
Sbjct: 63  PYTKDKFHQLLHELVEKNELNTGHIYFQVTRGT-----SPRAHQFPENTVKPVIIGYTKE 117
Query: 161 --DDFSQCKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGY 218
                   ++GVK   + +     L   +K++N L  VLAK EA +KG   +I +  +  
Sbjct: 118 NPRPLENLEKGVKA--TFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNT 174
Query: 219 VAEGPNVNVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDE 278
           V EG + NV  I        P  + IL G T   ++  A ++        VK    T  E
Sbjct: 175 VTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEIN-----MPVKEIPFTTHE 229
Query: 279 AKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALS 318
           A    E+    +T  +  +   D + I DG VGE T  L 
Sbjct: 230 ALKMDELFVTSTTSEITPVIEIDGKLIRDGKVGEWTRKLQ 269
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And 4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta) Length = 280 Back     alignment and structure
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid Aminotransferase Complexed With Pyridoxal-5'-Phosphate Length = 282 Back     alignment and structure
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid Aminotransferase Length = 308 Back     alignment and structure
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed With Pyridoxamine-5'-Phosphate Length = 277 Back     alignment and structure
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed With Pyridoxamine-5'-Phosphate Length = 282 Back     alignment and structure
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino Acid Aminotransferase Length = 282 Back     alignment and structure
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid Aminotransferase From Burkholderia Pseudomallei Length = 328 Back     alignment and structure
>pdb|2Y4R|A Chain A, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From Pseudomonas Aeruginosa Length = 292 Back     alignment and structure
>pdb|2ZGI|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate Lyase Length = 246 Back     alignment and structure
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From Escherichia Coli Length = 308 Back     alignment and structure
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino Acid Aminotransferase. Length = 309 Back     alignment and structure
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid Transaminase From Mycobacterium Tuberculosis Length = 368 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
3lul_A272 4-amino-4-deoxychorismate lyase; structural genomi 3e-43
3sno_A315 Hypothetical aminotransferase; D-aminoacid aminotr 3e-42
1i2k_A269 4-amino-4-deoxychorismate lyase; pyridoxal phospha 3e-42
2xpf_A292 4-amino-4-deoxychorismate lyase; para-aminobenzoic 2e-41
3daa_A277 D-amino acid aminotransferase; pyridoxal phosphate 2e-41
3csw_A285 BCAT, putative branched-chain-amino-acid aminotran 4e-32
3u0g_A328 Putative branched-chain amino acid aminotransfera; 5e-31
2zgi_A246 Putative 4-amino-4-deoxychorismate lyase; TTHA0621 7e-30
2eiy_A308 ILVE, branched-chain amino acid aminotransferase; 2e-29
1iye_A309 Branched-chain amino acid aminotransferase; hexame 2e-28
3qqm_A221 MLR3007 protein; structural genomics, joint center 2e-24
3ceb_A194 D-aminoacid aminotransferase-like PLP-dependent E; 3e-14
2coi_A386 Branched chain aminotransferase 1, cytosolic; PLP- 4e-10
2a1h_A365 Branched chain aminotransferase; fold type IV; HET 3e-09
3dth_A372 Branched-chain amino acid aminotransferase; open t 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Length = 272 Back     alignment and structure
 Score =  149 bits (378), Expect = 3e-43
 Identities = 55/271 (20%), Positives = 102/271 (37%), Gaps = 22/271 (8%)

Query: 60  VIPIDDHMVHRGH---GVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSI 116
              ID     R     G+F+T  + +       +H +R   SA    I            
Sbjct: 16  SFGID----DRIFLGEGLFETIRVNSSKPSFAYMHWERLGNSARQLGIPFEISFDDWFEH 71

Query: 117 LVQLTAASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQCKEGVKVITSS 176
           L+Q         G ++  L+ GP    L+  G  +   +      ++S  K  V++I+ +
Sbjct: 72  LIQKIQKDNLYHGGIKAILSGGPASRGLAERGQVSQLIFQTF---NYSIQKHPVRLISIN 128

Query: 177 -IPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKE 235
            +  K      +K+VNYL  ++A+ +A   GA  +++ + + +V E    N+ F+  +  
Sbjct: 129 WLRDKANPLYQLKSVNYLEAIIAQRQAIAVGADDALFFNTENHVTETTCANL-FLIENNI 187

Query: 236 LVLPFFDK-ILSGCTAKRLLELAPKL-VEQGRLKSVKTANLTVDEAKGAAEMMYVGSTLP 293
           L  P  +  IL G T  RL+    +  +       V+  +LT    + A  +    S   
Sbjct: 188 LYTPRVEDGILPGITRARLISHCQQHKMS------VQEISLTKKRIEDADAVFLTNSLQG 241

Query: 294 LLAITVWDEQPIGDGNVGELTMALSDLLWED 324
           +  +   D           +   L  LL +D
Sbjct: 242 IRRVLSLDNIIFEVN--HPIIDKLIFLLNQD 270
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Length = 315 Back     alignment and structure
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Length = 269 Back     alignment and structure
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Length = 277 Back     alignment and structure
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Length = 285 Back     alignment and structure
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Length = 328 Back     alignment and structure
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Length = 246 Back     alignment and structure
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Length = 308 Back     alignment and structure
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Length = 309 Back     alignment and structure
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti} Length = 221 Back     alignment and structure
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus} Length = 194 Back     alignment and structure
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Length = 386 Back     alignment and structure
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Length = 365 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query340
3daa_A277 D-amino acid aminotransferase; pyridoxal phosphate 100.0
3u0g_A328 Putative branched-chain amino acid aminotransfera; 100.0
2eiy_A308 ILVE, branched-chain amino acid aminotransferase; 100.0
1iye_A309 Branched-chain amino acid aminotransferase; hexame 100.0
3lul_A272 4-amino-4-deoxychorismate lyase; structural genomi 100.0
4dqn_A345 Putative branched-chain amino acid aminotransfera; 100.0
1i2k_A269 4-amino-4-deoxychorismate lyase; pyridoxal phospha 100.0
2xpf_A292 4-amino-4-deoxychorismate lyase; para-aminobenzoic 100.0
3sno_A315 Hypothetical aminotransferase; D-aminoacid aminotr 100.0
3uzo_A358 Branched-chain-amino-acid aminotransferase; BCAT, 100.0
3dth_A372 Branched-chain amino acid aminotransferase; open t 100.0
2a1h_A365 Branched chain aminotransferase; fold type IV; HET 100.0
2coi_A386 Branched chain aminotransferase 1, cytosolic; PLP- 100.0
3csw_A285 BCAT, putative branched-chain-amino-acid aminotran 100.0
3dtg_A372 Branched-chain amino acid aminotransferase; open t 100.0
2zgi_A246 Putative 4-amino-4-deoxychorismate lyase; TTHA0621 100.0
3qqm_A221 MLR3007 protein; structural genomics, joint center 100.0
3ceb_A194 D-aminoacid aminotransferase-like PLP-dependent E; 100.0
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A* Back     alignment and structure
Probab=100.00  E-value=1.1e-63  Score=467.19  Aligned_cols=270  Identities=25%  Similarity=0.339  Sum_probs=245.5

Q ss_pred             ceeCCEEeCCCcceeccCCcccccccceeeeeeeeCCeecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC
Q 019507           47 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTAASQC  126 (340)
Q Consensus        47 ~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~~~~~  126 (340)
                      +|+||++++.+++.|+++||||+||||||||||+++|++|+|++|++||.+||+.|+|+.|++.++|.+.+.+++++|+.
T Consensus         3 ~~~nG~~~~~~~~~i~~~d~g~~yGdgvFEtir~~~g~~f~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~li~~n~~   82 (277)
T 3daa_A            3 TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL   82 (277)
T ss_dssp             EEETTEEEEGGGCCBCTTBHHHHTCCEEEEEEEEETTEETTHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHTC
T ss_pred             EEECCEEeEhHHCeechhhhHHhcccEEEEEEEEECCEEcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            68999999999999999999999999999999999999999999999999999999999889999999999999999988


Q ss_pred             CCceEEEEEecCCCCCccCCC-CCCCceEEEEEEcCCCCc--CCCCcEEEEeeeecCCCCCCCccccCChhHHHHHHHHH
Q 019507          127 KKGTLRFWLTAGPGDFLLSPA-GCPTSAFYAVVIDDDFSQ--CKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAE  203 (340)
Q Consensus       127 ~~~~lRi~vt~G~g~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~gv~l~~~~~~~~~~~~~~~Kt~nyl~~~la~~eA~  203 (340)
                      .+++||+++++|.+.+++.++ .+..|++++++.|.+.+.  +.+|+++.+++..  ++.++++||+||+.+++++++|+
T Consensus        83 ~~~~lri~vtrG~~~r~~~~p~~~~~~~~~i~~~p~~~~~~~~~~gv~~~~~~~~--r~~~~~~Kt~nyl~~~la~~eA~  160 (277)
T 3daa_A           83 NTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVEDI--RWLRCDIKSLNLLGAVLAKQEAH  160 (277)
T ss_dssp             CSEEEEEEEESCBCSCCSSCCSSCCCCEEEEEEEECCCCHHHHHHCEEEEEEECC--CCSCTTSCBSCCHHHHHHHHHHH
T ss_pred             CcEEEEEEEEecCCCcCCCCCCCCCCcEEEEEEEECCCChHHHhCCeEEEEecCc--cccCCCcchhhhHHHHHHHHHHH
Confidence            899999999999776655433 345678888887765321  3579999887543  35578999999999999999999


Q ss_pred             HcCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEeeCHHHHhcc
Q 019507          204 DKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGA  282 (340)
Q Consensus       204 ~~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i~~~dL~~a  282 (340)
                      ++|+||+||+| +|+|+|++++|| |+++||+|+|||++ ++|+||||+.|+++|+++   |+  +|+|+.++++||.+|
T Consensus       161 ~~g~~e~l~l~-~g~v~E~~~sNi-f~~~~~~l~TP~~~~~iL~GitR~~vl~~~~~~---g~--~v~e~~i~~~el~~a  233 (277)
T 3daa_A          161 EKGCYEAILHR-NNTVTEGSSSNV-FGIKDGILYTHPANNMILKGITRDVVIACANEI---NM--PVKEIPFTTHEALKM  233 (277)
T ss_dssp             HTTCSEEEEEE-TTEEEEETTBEE-EEEETTEEEECCSSTTSCCCHHHHHHHHHHHHT---TC--CEECCCCBHHHHHTC
T ss_pred             HCCCCEEEEEc-CCEEEEcCceEE-EEEECCEEECCCCcCCCCccHHHHHHHHHHHHc---CC--eEEEEeCCHHHHHhc
Confidence            99999999997 899999999999 56699999999996 799999999999999998   98  999999999999999


Q ss_pred             ceeeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHHHHHh
Q 019507          283 AEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDM  325 (340)
Q Consensus       283 dEvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~~~~i  325 (340)
                      ||+|+|||++||+||.+||++.++.|++||+|++|++.|.+.|
T Consensus       234 devf~~ns~~~i~pV~~id~~~~~~g~~g~~t~~L~~~~~~~i  276 (277)
T 3daa_A          234 DELFVTSTTSEITPVIEIDGKLIRDGKVGEWTRKLQKQFETKI  276 (277)
T ss_dssp             SEEEEEETTTEEEEEEEETTEESTTSSCCHHHHHHHHHHHTTC
T ss_pred             CeeeeecChhhEEEEEEECCEECCCCCcCHHHHHHHHHHHHhc
Confidence            9999999999999999999999998889999999999998544
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei} Back     alignment and structure
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A* Back     alignment and structure
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A* Back     alignment and structure
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila} Back     alignment and structure
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans} Back     alignment and structure
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A* Back     alignment and structure
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum} Back     alignment and structure
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A* Back     alignment and structure
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A* Back     alignment and structure
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A* Back     alignment and structure
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8} Back     alignment and structure
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A* Back     alignment and structure
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus} Back     alignment and structure
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti} Back     alignment and structure
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 340
d1daaa_277 e.17.1.1 (A:) D-aminoacid aminotransferase {Bacill 2e-32
d1iyea_304 e.17.1.1 (A:) Branched-chain aminoacid aminotransf 3e-30
d1i2ka_269 e.17.1.1 (A:) Aminodeoxychorismate lyase {Escheric 4e-20
d2a1ha1363 e.17.1.1 (A:3-365) Branched-chain aminoacid aminot 2e-06
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Length = 277 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: D-aminoacid aminotransferase
species: Bacillus sp., strain YM-1 [TaxId: 1409]

 Score =  120 bits (300), Expect = 2e-32
 Identities = 61/278 (21%), Positives = 106/278 (38%), Gaps = 7/278 (2%)

Query: 47  SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSAVSARISS 106
           +++   I+    + I  +D     G GV++   + NG ++ ++ H+DR   SA   RI+ 
Sbjct: 3   TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITI 62

Query: 107 PFPRSTLRSILVQLTAASQCKKGTLRFWL-TAGPGDFLLSPAGCPTSAFYAVVIDDDFSQ 165
           P+ +     +L +L   ++   G + F +           P             ++    
Sbjct: 63  PYTKDKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPL 122

Query: 166 CKEGVKVITSSIPMKPRLFATVKNVNYLPNVLAKMEAEDKGASASIWIDEDGYVAEGPNV 225
                 V  + +     L   +K++N L  VLAK EA +KG   +I    +  V EG + 
Sbjct: 123 ENLEKGVKATFVEDIRWLRCDIKSLNLLGAVLAKQEAHEKGCYEAILHR-NNTVTEGSSS 181

Query: 226 NVAFITHDKELVLPFFDKILSGCTAKRLLELAPKLVEQGRLKSVKTANLTVDEAKGAAEM 285
           NV  I        P  + IL G T   ++  A ++    +         T  EA    E+
Sbjct: 182 NVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEI-----PFTTHEALKMDEL 236

Query: 286 MYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWE 323
               +T  +  +   D + I DG VGE T  L      
Sbjct: 237 FVTSTTSEITPVIEIDGKLIRDGKVGEWTRKLQKQFET 274
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]} Length = 304 Back     information, alignment and structure
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Length = 269 Back     information, alignment and structure
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 363 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query340
d1iyea_304 Branched-chain aminoacid aminotransferase {Escheri 100.0
d1daaa_277 D-aminoacid aminotransferase {Bacillus sp., strain 100.0
d1i2ka_269 Aminodeoxychorismate lyase {Escherichia coli [TaxI 100.0
d2a1ha1363 Branched-chain aminoacid aminotransferase {Human ( 100.0
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes
family: D-aminoacid aminotransferase-like PLP-dependent enzymes
domain: Branched-chain aminoacid aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-61  Score=455.45  Aligned_cols=285  Identities=20%  Similarity=0.281  Sum_probs=254.6

Q ss_pred             ceeCCEEeCCCcceeccCCcccccccceeeeeeeeCCe----ecCHHhHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 019507           47 SIFGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGY----LYELDVHLDRFLRSAVSARISSPFPRSTLRSILVQLTA  122 (340)
Q Consensus        47 ~~~nG~~~~~~~~~i~~~drg~~yG~gvFEtlrv~~G~----~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~li~  122 (340)
                      +|+||++++.+++.||++||||+||||||||||+++|+    +|+|++|++||.+||+.|+|+.|.+.+.+.+.+.++++
T Consensus         5 i~~nG~~~~~~~a~i~~~d~g~~yGdgvFEt~r~~~g~~~~~lf~l~~Hl~RL~~Sa~~l~i~~~~~~~~~~~~~~~~v~   84 (304)
T d1iyea_           5 IWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIR   84 (304)
T ss_dssp             EEETTEEEEGGGCCCCTTCHHHHHCCEEECCEEEECCTTSSEEETHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHH
T ss_pred             EEECCEEeehHHCccCccccHHhhceeeeecEEEEECCCCCeecCHHHHHHHHHHhcccccCCCcchhhHHHHHHHHHHH
Confidence            58999999999999999999999999999999999886    89999999999999999999999999999999999999


Q ss_pred             HcCCCCceEEEEEecCCCCCccCCCCCCCceEEEEEEcCCCCc----CCCCcEEEEeeeecCCC---CCCCccccCChhH
Q 019507          123 ASQCKKGTLRFWLTAGPGDFLLSPAGCPTSAFYAVVIDDDFSQ----CKEGVKVITSSIPMKPR---LFATVKNVNYLPN  195 (340)
Q Consensus       123 ~~~~~~~~lRi~vt~G~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~gv~l~~~~~~~~~~---~~~~~Kt~nyl~~  195 (340)
                      +++..++++|+.++++.+..++.+.....+..++.+.+.+...    ...|+++.+++..|..+   +...+|++||+.+
T Consensus        85 ~n~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~r~~~~~~~~~~~k~~n~~~~  164 (304)
T d1iyea_          85 KNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSS  164 (304)
T ss_dssp             HTTCSSEEEEEEEEECSSCSSSSCCTTCCEEEEEEEECCCCTTCTTHHHHCEEEEECSSCCCCTTTSCTTSCBGGGHHHH
T ss_pred             hcccccceEEEEeeecccccccCCccccccceeeccccccccCChhhccCceEEEEeeccccCCCCcccccccccCcccc
Confidence            9999999999999998777777665555666666665533221    34688988887766533   3567899999999


Q ss_pred             HHHHHHHHHcCCCEEEEEcCCCcEEecCCceEEEEEeCCEEEcCCCC-CccccHHHHHHHHHhhhhhhCCCcceEEEEee
Q 019507          196 VLAKMEAEDKGASASIWIDEDGYVAEGPNVNVAFITHDKELVLPFFD-KILSGCTAKRLLELAPKLVEQGRLKSVKTANL  274 (340)
Q Consensus       196 ~la~~eA~~~G~de~Llld~~G~V~E~s~sNi~fv~k~~~l~TP~l~-~iL~GItR~~ll~la~~~~~~G~~~~v~E~~i  274 (340)
                      +++.++|+++|+||+||+|++|+|+|++++|| |+++||+|+|||++ +||+||||+.|+++|+++   |+  +|+|+++
T Consensus       165 ~~a~~~A~~~g~deal~ld~~g~v~E~s~sNi-f~vk~~~l~TP~~~~~iL~GItR~~vi~~~~~~---gi--~v~e~~i  238 (304)
T d1iyea_         165 LLVGSEARRHGYQEGIALDVNGYISEGAGENL-FEVKDGVLFTPPFTSSALPGITRDAIIKLAKEL---GI--EVREQVL  238 (304)
T ss_dssp             HHHHHHHHHTTCSEEEEECTTSBEEEETTBEE-EEEETTEEEECCGGGTCCCCHHHHHHHHHHHHT---TC--CEEECCC
T ss_pred             chhhhHHHHcCCcceeeecccCeEeecCceeE-EEEeCCEEEEeecccccCCchHHHHHHHHhhhc---cc--ceeeccC
Confidence            99999999999999999999999999999999 66799999999985 899999999999999998   98  9999999


Q ss_pred             CHHHHhccceeeeecCccCeEEEEEECCeecCCCCchHHHHHHHHHHHHHhhcCCCCcceeccC
Q 019507          275 TVDEAKGAAEMMYVGSTLPLLAITVWDEQPIGDGNVGELTMALSDLLWEDMVAGPETQRHCVSY  338 (340)
Q Consensus       275 ~~~dL~~adEvfltnS~~gI~pV~~id~~~~~~g~~gp~t~~L~~~~~~~i~~~~~~~~~~~~~  338 (340)
                      +++||.+|||+|+|||++||+||.+||++.+++|++||+|++|+++|. +|+.|.....|=|.|
T Consensus       239 ~~~~L~~AdEvfltns~~gi~PV~~id~~~~~~g~~Gpit~~L~~~~~-~i~~g~~~~~~~W~~  301 (304)
T d1iyea_         239 SRESLYLADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAFF-GLFTGETEDKWGWLD  301 (304)
T ss_dssp             BTTHHHHCSEEEEEETTTEEEEEEEETTEECTTSSCCHHHHHHHHHHH-GGGTTSSCCCSCCEE
T ss_pred             CHHHHHhhCHHhhhCCCCeEEEEEEECCEEcCCCCcCHHHHHHHHHHH-HHHcCCCCCCCCCCe
Confidence            999999999999999999999999999999999999999999999997 799997755555654
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp., strain YM-1 [TaxId: 1409]} Back     information, alignment and structure
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure