Citrus Sinensis ID: 019556

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA
ccHHHHHHHHHcccccEEEEccccccHHHHHHHHHcccEEEccccccccccccccccEEEEccccccHHHHHHHHcccccEEEccccccHHHHHHHHHHHHcccEEEEEcccccccEEEEccccccEEEEEcHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHccccEEEEcccccccccccHHHHHccccHHHHHccccccccEEEEEccccccHHHHHHHHHHHHHcccccHHccc
cHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHcccEEEEcccccEEccEcccccEEEEccccHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHccccEEEEEEccccccEEEEccccccEEEEEcHHHHHHHHHHHHcccccccccccccEEEEEccHHcccccccccHHHEEEEEccccccccHHHHHHHHHHHccHHcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHccccEEEEccHHHcccccEEEEccccccEEEEccccccccEEEEEEcccccHHHHHHHHHHHHHHcccccHHHHc
MAFIAYEARkqfpeekiwitneiihnptvNKRLEEMavqnipveegkkqfdvvnkgdvvvLPAFGAAVEEMVTLNnknvqivdttcpwvSKVWTSVekhkkgdytsiihgkysheetvataSFAGKYIIVKNMKEAEYVCDYIlggelngssstKEAFLEKFKKAVskgfdpdvdlVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVggwnssntsHLQEIaedrgipsywidsekrigpgnkIAYKLMHGElvekenwlpkgqitigitsgastpdKAVEDVLKKVFEIKREEALQLA
MAFIAYEArkqfpeekiwitneIIHNPTVNKRLEEMAVQNIPveegkkqfdvvNKGDVVVLPAFGAAVEEMVTLnnknvqivdttcPWVSKVWTsvekhkkgdytsiihgkysheeTVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAvskgfdpdvdlVKVGianqttmlkgeteeIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQeiaedrgipsywidsekriGPGNKIAYKLMHGELVEKENWLPKGQITIgitsgastpdkAVEDVLKKVFEIKREEALQLA
MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA
***IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNG*****EAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILV*******************GIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGA******VEDVLKKVF***********
MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQ**
MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA
MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKRE******
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MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query339 2.2.26 [Sep-21-2011]
Q6AVG6459 4-hydroxy-3-methylbut-2-e yes no 0.991 0.732 0.860 1e-173
Q94B35466 4-hydroxy-3-methylbut-2-e yes no 0.991 0.721 0.833 1e-168
B8HWD3405 4-hydroxy-3-methylbut-2-e yes no 0.949 0.795 0.662 1e-131
Q5N249398 4-hydroxy-3-methylbut-2-e yes no 0.952 0.811 0.632 1e-130
Q31S64398 4-hydroxy-3-methylbut-2-e yes no 0.952 0.811 0.632 1e-130
Q3M8X6402 4-hydroxy-3-methylbut-2-e yes no 0.964 0.813 0.645 1e-129
P58674402 4-hydroxy-3-methylbut-2-e yes no 0.964 0.813 0.645 1e-129
B0C4N8415 4-hydroxy-3-methylbut-2-e yes no 0.979 0.8 0.632 1e-128
B2IZV5402 4-hydroxy-3-methylbut-2-e yes no 0.964 0.813 0.630 1e-125
Q8DK29402 4-hydroxy-3-methylbut-2-e yes no 0.949 0.800 0.664 1e-125
>sp|Q6AVG6|ISPH_ORYSJ 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=ISPH PE=2 SV=1 Back     alignment and function desciption
 Score =  607 bits (1565), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 289/336 (86%), Positives = 311/336 (92%)

Query: 4   IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 63
           IAYEARKQFP+++IW+TNEIIHNPTVNKRLE+M VQNIPV+ G K FDVV +GDVVVLPA
Sbjct: 124 IAYEARKQFPDDRIWLTNEIIHNPTVNKRLEDMGVQNIPVDAGIKDFDVVEQGDVVVLPA 183

Query: 64  FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASF 123
           FGAAVEEM TLN K VQIVDTTCPWVSKVW  VEKHKKGDYTSIIHGKYSHEETVATASF
Sbjct: 184 FGAAVEEMYTLNEKKVQIVDTTCPWVSKVWNMVEKHKKGDYTSIIHGKYSHEETVATASF 243

Query: 124 AGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIAN 183
           AG YIIVKN+ EA YVCDYILGG+L+GSSSTKE FLEKFK AVS GFDPDVDLVKVGIAN
Sbjct: 244 AGTYIIVKNIAEASYVCDYILGGQLDGSSSTKEEFLEKFKNAVSPGFDPDVDLVKVGIAN 303

Query: 184 QTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDL 243
           QTTMLKGETEEIGKLVEKTMMR+FGVENVN+HFI+FNTICDATQERQDAMY++V+EKVDL
Sbjct: 304 QTTMLKGETEEIGKLVEKTMMRRFGVENVNDHFIAFNTICDATQERQDAMYQLVKEKVDL 363

Query: 244 ILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKG 303
           ILVVGGWNSSNTSHLQEI E  GIPSYWIDSE+RIGPGNKI+YKL HGELVEKENWLP+G
Sbjct: 364 ILVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEKENWLPEG 423

Query: 304 QITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA 339
            ITIG+TSGASTPDK VED L+KVFEIKR+E LQ A
Sbjct: 424 PITIGVTSGASTPDKVVEDALQKVFEIKRQEVLQAA 459
Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Is essential for chloroplast development.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 1EC: .EC: 1EC: 7EC: .EC: 1EC: .EC: 2
>sp|Q94B35|ISPH_ARATH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=ISPH PE=2 SV=1 Back     alignment and function description
>sp|B8HWD3|ISPH_CYAP4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|Q5N249|ISPH_SYNP6 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|Q31S64|ISPH_SYNE7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|Q3M8X6|ISPH_ANAVT 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|P58674|ISPH_NOSS1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|B0C4N8|ISPH_ACAM1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|B2IZV5|ISPH_NOSP7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ispH PE=3 SV=1 Back     alignment and function description
>sp|Q8DK29|ISPH_THEEB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispH PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
343466165 470 4-hydroxy-3-methylbut-2-enyl diphosphate 0.991 0.714 0.880 1e-176
164605002 462 4-hydroxy-3-methylbut-2-enyl diphosphate 0.991 0.727 0.892 1e-176
224105455 460 predicted protein [Populus trichocarpa] 0.991 0.730 0.875 1e-176
255556135 466 4-hydroxy-3-methylbut-2-enyl diphosphate 0.991 0.721 0.875 1e-176
195928050 462 4-hydroxy-3-methylbut-2-enyl diphosphate 0.991 0.727 0.886 1e-175
189017050426 putative chloroplast 4-hydroxy-3-methylb 0.991 0.788 0.875 1e-175
356538819 462 PREDICTED: 4-hydroxy-3-methylbut-2-enyl 0.991 0.727 0.869 1e-175
356545301380 PREDICTED: 4-hydroxy-3-methylbut-2-enyl 0.991 0.884 0.869 1e-175
225428566 465 PREDICTED: 4-hydroxy-3-methylbut-2-enyl 0.991 0.722 0.863 1e-174
255641515380 unknown [Glycine max] 0.991 0.884 0.866 1e-174
>gi|343466165|gb|AEM42976.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Siraitia grosvenorii] Back     alignment and taxonomy information
 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 296/336 (88%), Positives = 320/336 (95%)

Query: 4   IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 63
           IAYEARKQFP+EKIWITNEIIHNPTVNKRLEEM V+NIP+EEGKKQF+VVNKGDVV+LPA
Sbjct: 135 IAYEARKQFPDEKIWITNEIIHNPTVNKRLEEMEVENIPLEEGKKQFEVVNKGDVVILPA 194

Query: 64  FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASF 123
           FGAAV+EM+TL+ KNVQIVDTTCPWVSKVW  VEKHKKGD+TSIIHGKY+HEETVATASF
Sbjct: 195 FGAAVDEMLTLSEKNVQIVDTTCPWVSKVWNVVEKHKKGDFTSIIHGKYAHEETVATASF 254

Query: 124 AGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIAN 183
           AGKYIIVKNM EA YVCDYILGGEL+GSS TKE F++KFK AVSKGFDPD+DLVKVGIAN
Sbjct: 255 AGKYIIVKNMAEATYVCDYILGGELDGSSPTKEEFMKKFKNAVSKGFDPDIDLVKVGIAN 314

Query: 184 QTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDL 243
           QTTMLKGETEEIGKLVE+TMMRK GVENVNEHFISFNTICDATQERQDAMYK+VE K+DL
Sbjct: 315 QTTMLKGETEEIGKLVERTMMRKHGVENVNEHFISFNTICDATQERQDAMYKLVEGKLDL 374

Query: 244 ILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKG 303
           +LVVGGWNSSNTSHLQ+IAEDRGIPSYW+DSE+RIGPGNKIAYKL HGELVEKENWLP+G
Sbjct: 375 MLVVGGWNSSNTSHLQQIAEDRGIPSYWVDSEQRIGPGNKIAYKLNHGELVEKENWLPRG 434

Query: 304 QITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA 339
            ITIG+TSGASTPDK VEDVL KVF+IKREEALQ A
Sbjct: 435 PITIGVTSGASTPDKVVEDVLIKVFDIKREEALQFA 470

Source: Siraitia grosvenorii

Species: Siraitia grosvenorii

Genus: Siraitia

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|164605002|dbj|BAF98297.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|224105455|ref|XP_002313816.1| predicted protein [Populus trichocarpa] gi|222850224|gb|EEE87771.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255556135|ref|XP_002519102.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative [Ricinus communis] gi|223541765|gb|EEF43313.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|195928050|gb|ACG55683.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|189017050|gb|ACD70402.1| putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356538819|ref|XP_003537898.1| PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-like [Glycine max] Back     alignment and taxonomy information
>gi|356545301|ref|XP_003541082.1| PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-like [Glycine max] Back     alignment and taxonomy information
>gi|225428566|ref|XP_002284659.1| PREDICTED: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Vitis vinifera] Back     alignment and taxonomy information
>gi|255641515|gb|ACU21031.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
TAIR|locus:2116164466 HDR "4-hydroxy-3-methylbut-2-e 0.991 0.721 0.833 2.8e-153
TIGR_CMR|VC_0685316 VC_0685 "hydroxymethylbutenyl 0.171 0.183 0.508 1.5e-16
TIGR_CMR|NSE_0438303 NSE_0438 "4-hydroxy-3-methylbu 0.315 0.353 0.292 4e-16
TIGR_CMR|CPS_1211309 CPS_1211 "4-hydroxy-3-methylbu 0.165 0.181 0.526 9.9e-14
UNIPROTKB|P62623316 ispH "1-hydroxy-2-methyl-2-(E) 0.271 0.291 0.306 1.2e-13
UNIPROTKB|Q81LU9316 ispH "4-hydroxy-3-methylbut-2- 0.368 0.395 0.276 5.9e-13
TIGR_CMR|BA_4511316 BA_4511 "penicillin tolerance 0.368 0.395 0.276 5.9e-13
UNIPROTKB|Q8EBI7318 ispH "4-hydroxy-3-methylbut-2- 0.283 0.301 0.314 1.2e-12
TIGR_CMR|SO_3529318 SO_3529 "penicillin tolerance 0.283 0.301 0.314 1.2e-12
TIGR_CMR|CJE_0973277 CJE_0973 "4-hydroxy-3-methylbu 0.174 0.212 0.483 1.6e-12
TAIR|locus:2116164 HDR "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1495 (531.3 bits), Expect = 2.8e-153, P = 2.8e-153
 Identities = 280/336 (83%), Positives = 312/336 (92%)

Query:     4 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 63
             IAYEARKQFPEE++WITNEIIHNPTVNKRLE+M V+ IPVE+ KKQFDVV K DVV+LPA
Sbjct:   131 IAYEARKQFPEERLWITNEIIHNPTVNKRLEDMDVKIIPVEDSKKQFDVVEKDDVVILPA 190

Query:    64 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASF 123
             FGA V+EM  LN+K VQIVDTTCPWV+KVW +VEKHKKG+YTS+IHGKY+HEET+ATASF
Sbjct:   191 FGAGVDEMYVLNDKKVQIVDTTCPWVTKVWNTVEKHKKGEYTSVIHGKYNHEETIATASF 250

Query:   124 AGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIAN 183
             AGKYIIVKNMKEA YVCDYILGG+ +GSSSTKE F+EKFK A+SKGFDPD DLVKVGIAN
Sbjct:   251 AGKYIIVKNMKEANYVCDYILGGQYDGSSSTKEEFMEKFKYAISKGFDPDNDLVKVGIAN 310

Query:   184 QTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDL 243
             QTTMLKGETEEIG+L+E TMMRK+GVENV+ HFISFNTICDATQERQDA+Y++VEEK+DL
Sbjct:   311 QTTMLKGETEEIGRLLETTMMRKYGVENVSGHFISFNTICDATQERQDAIYELVEEKIDL 370

Query:   244 ILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKG 303
             +LVVGGWNSSNTSHLQEI+E RGIPSYWIDSEKRIGPGNKIAYKL +GELVEKEN+LPKG
Sbjct:   371 MLVVGGWNSSNTSHLQEISEARGIPSYWIDSEKRIGPGNKIAYKLHYGELVEKENFLPKG 430

Query:   304 QITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA 339
              ITIG+TSGASTPDK VED L KVF+IKREE LQLA
Sbjct:   431 PITIGVTSGASTPDKVVEDALVKVFDIKREELLQLA 466
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=IEA;IGI;IEP;ISS
GO:0046677 "response to antibiotic" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0046429 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity" evidence=IMP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0051745 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity" evidence=IGI
GO:0009507 "chloroplast" evidence=IDA
TIGR_CMR|VC_0685 VC_0685 "hydroxymethylbutenyl pyrophosphate reductase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0438 NSE_0438 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_1211 CPS_1211 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|P62623 ispH "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q81LU9 ispH "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4511 BA_4511 "penicillin tolerance protein LytB" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EBI7 ispH "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3529 SO_3529 "penicillin tolerance protein LytB" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0973 CJE_0973 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q55643ISPH_SYNY31, ., 1, 7, ., 1, ., 20.62460.96460.8627N/Ano
P58674ISPH_NOSS11, ., 1, 7, ., 1, ., 20.64560.96460.8134yesno
B0JVA7ISPH_MICAN1, ., 1, 7, ., 1, ., 20.64320.94980.8009yesno
B7K4V8ISPH_CYAP81, ., 1, 7, ., 1, ., 20.63140.95870.8064yesno
Q31CR8ISPH_PROM91, ., 1, 7, ., 1, ., 20.58760.93800.7989yesno
B7KEG3ISPH_CYAP71, ., 1, 7, ., 1, ., 20.63060.96460.8134yesno
B2IZV5ISPH_NOSP71, ., 1, 7, ., 1, ., 20.63060.96460.8134yesno
B0C4N8ISPH_ACAM11, ., 1, 7, ., 1, ., 20.63280.97930.8yesno
B8HWD3ISPH_CYAP41, ., 1, 7, ., 1, ., 20.66260.94980.7950yesno
Q10WA8ISPH_TRIEI1, ., 1, 7, ., 1, ., 20.59450.94980.8029yesno
Q7U9K4ISPH_SYNPX1, ., 1, 7, ., 1, ., 20.59810.94100.7994yesno
B1XPG7ISPH_SYNP21, ., 1, 7, ., 1, ., 20.62950.96160.8089yesno
A2BP63ISPH_PROMS1, ., 1, 7, ., 1, ., 20.58840.94690.8065yesno
A5GIF7ISPH_SYNPW1, ., 1, 7, ., 1, ., 20.60.95570.8120yesno
Q7V329ISPH_PROMP1, ., 1, 7, ., 1, ., 20.58480.95280.8115yesno
A5GWG3ISPH_SYNR31, ., 1, 7, ., 1, ., 20.60110.96750.8078yesno
Q3M8X6ISPH_ANAVT1, ., 1, 7, ., 1, ., 20.64560.96460.8134yesno
B1WTZ2ISPH_CYAA51, ., 1, 7, ., 1, ., 20.66360.96460.8134yesno
A2CCK3ISPH_PROM31, ., 1, 7, ., 1, ., 20.57490.94690.8065yesno
Q3B080ISPH_SYNS91, ., 1, 7, ., 1, ., 20.58530.94690.8045yesno
Q7VDS2ISPH_PROMA1, ., 1, 7, ., 1, ., 20.57920.94690.7925yesno
Q46HB0ISPH_PROMT1, ., 1, 7, ., 1, ., 20.59870.94690.8004yesno
A9BDN6ISPH_PROM41, ., 1, 7, ., 1, ., 20.57780.96460.8094yesno
A2C096ISPH_PROM11, ., 1, 7, ., 1, ., 20.59870.94690.8004yesno
Q7V4T7ISPH_PROMM1, ., 1, 7, ., 1, ., 20.57790.94690.8065yesno
Q31S64ISPH_SYNE71, ., 1, 7, ., 1, ., 20.63220.95280.8115yesno
Q8DK29ISPH_THEEB1, ., 1, 7, ., 1, ., 20.66460.94980.8009yesno
Q94B35ISPH_ARATH1, ., 1, 7, ., 1, ., 20.83330.99110.7210yesno
Q0IDE5ISPH_SYNS31, ., 1, 7, ., 1, ., 20.59750.94980.8090yesno
Q6AVG6ISPH_ORYSJ1, ., 1, 7, ., 1, ., 20.86010.99110.7320yesno
Q5N249ISPH_SYNP61, ., 1, 7, ., 1, ., 20.63220.95280.8115yesno
Q7NG74ISPH_GLOVI1, ., 1, 7, ., 1, ., 20.55550.94980.7721yesno
Q3AN10ISPH_SYNSC1, ., 1, 7, ., 1, ., 20.60060.94690.8045yesno
A3PAY5ISPH_PROM01, ., 1, 7, ., 1, ., 20.58840.94690.8065yesno
A2BUP5ISPH_PROM51, ., 1, 7, ., 1, ., 20.57870.95280.8115yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.17.1.20.946
3rd Layer1.17.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
HDR
SubName- Full=Putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase; EC=1.17.1.2; Flags- Fragment; (460 aa)
(Populus trichocarpa)
Predicted Functional Partners:
HDS
SubName- Full=Putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; EC=1.1 [...] (742 aa)
  •  •• 0.952
estExt_fgenesh4_pm.C_660111
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC-1.17.7.1) (761 aa)
  •  •• 0.947
IDI
SubName- Full=Putative chloroplast isopentenyl diphosphate isomerase; EC=5.3.3.2; Flags- Fragme [...] (234 aa)
     •• 0.920
gw1.XV.832.1
hypothetical protein (236 aa)
     •  0.899
gw1.VII.3333.1
annotation not avaliable (311 aa)
     •  0.899
gw1.IV.3487.1
hypothetical protein (293 aa)
     •  0.899
gw1.II.860.1
hypothetical protein (306 aa)
     •  0.899
IspS
SubName- Full=Putative chloroplast isoprene synthase; Flags- Fragment; (536 aa)
     •  0.899
grail3.0137000601
hypothetical protein (134 aa)
     •  0.899
grail3.0106013901
diphosphomevalonate decarboxylase (EC-4.1.1.33) (417 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
PLN02821460 PLN02821, PLN02821, 1-hydroxy-2-methyl-2-(E)-buten 0.0
PRK13371387 PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl d 0.0
COG0761294 COG0761, lytB, 4-Hydroxy-3-methylbut-2-enyl diphos 2e-82
pfam02401280 pfam02401, LYTB, LytB protein 2e-80
TIGR00216280 TIGR00216, ispH_lytB, (E)-4-hydroxy-3-methyl-but-2 2e-74
PRK01045298 PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl dipho 2e-42
PRK00087 647 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d 3e-38
PRK12360281 PRK12360, PRK12360, 4-hydroxy-3-methylbut-2-enyl d 3e-36
>gnl|CDD|215440 PLN02821, PLN02821, 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase Back     alignment and domain information 
 Score =  692 bits (1788), Expect = 0.0
 Identities = 288/335 (85%), Positives = 314/335 (93%)

Query: 4   IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 63
           IAYEARKQFP+EK+WITNEIIHNPTVNKRLEEM VQ I VEEG K F VV +GDVV+LPA
Sbjct: 126 IAYEARKQFPDEKLWITNEIIHNPTVNKRLEEMNVQFIEVEEGGKDFSVVGEGDVVILPA 185

Query: 64  FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASF 123
           FGA+VEEM TLN+KNVQIVDTTCPWVSKVW +VEKHKK DYTS+IHGKY+HEETVATASF
Sbjct: 186 FGASVEEMQTLNDKNVQIVDTTCPWVSKVWNTVEKHKKKDYTSVIHGKYAHEETVATASF 245

Query: 124 AGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIAN 183
           AGKYIIVKNMKEA YVCDYILGG+L+GSS TKE FLEKFK AVSKGFDPD DLVKVGIAN
Sbjct: 246 AGKYIIVKNMKEATYVCDYILGGQLDGSSGTKEEFLEKFKNAVSKGFDPDTDLVKVGIAN 305

Query: 184 QTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDL 243
           QTTMLKGETEEIGKL+EKTMM+K+GVENVN+HF+SFNTICDATQERQDAMYK+VEEK+DL
Sbjct: 306 QTTMLKGETEEIGKLLEKTMMQKYGVENVNDHFMSFNTICDATQERQDAMYKLVEEKLDL 365

Query: 244 ILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKG 303
           +LVVGGWNSSNTSHLQEIAE +GIPSYWIDSE+RIGPGN IA+KL HGELVEKENWLP+G
Sbjct: 366 MLVVGGWNSSNTSHLQEIAEHKGIPSYWIDSEERIGPGNTIAHKLNHGELVEKENWLPEG 425

Query: 304 QITIGITSGASTPDKAVEDVLKKVFEIKREEALQL 338
            +TIG+TSGASTPDK VEDVL KVF+IKREEALQL
Sbjct: 426 PVTIGVTSGASTPDKVVEDVLDKVFDIKREEALQL 460

Length = 460
>gnl|CDD|237367 PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>gnl|CDD|223832 COG0761, lytB, 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|217018 pfam02401, LYTB, LytB protein Back     alignment and domain information
>gnl|CDD|232878 TIGR00216, ispH_lytB, (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) Back     alignment and domain information
>gnl|CDD|234893 PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed Back     alignment and domain information
>gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed Back     alignment and domain information
>gnl|CDD|237075 PRK12360, PRK12360, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 339
PLN02821460 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate red 100.0
PRK13371387 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 100.0
TIGR00216280 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyroph 100.0
PRK12360281 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 100.0
PF02401281 LYTB: LytB protein; InterPro: IPR003451 Terpenes a 100.0
PRK01045298 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate redu 100.0
COG0761294 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate redu 100.0
PRK00087 647 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 100.0
PF02401281 LYTB: LytB protein; InterPro: IPR003451 Terpenes a 95.85
TIGR00216280 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyroph 92.1
PRK01045298 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate redu 92.04
PRK12360281 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 90.28
cd01537 264 PBP1_Repressors_Sugar_Binding_like Ligand-binding 89.32
PRK00087 647 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 85.97
PF02571249 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: 84.32
COG1023300 Gnd Predicted 6-phosphogluconate dehydrogenase [Ca 83.35
PRK08057248 cobalt-precorrin-6x reductase; Reviewed 80.82
PF13407 257 Peripla_BP_4: Periplasmic binding protein domain; 80.1
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase Back     alignment and domain information 
Probab=100.00  E-value=4.8e-104  Score=787.86  Aligned_cols=338  Identities=85%  Similarity=1.296  Sum_probs=324.3

Q ss_pred             ChhHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCc
Q 019556            1 MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ   80 (339)
Q Consensus         1 ~v~~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~   80 (339)
                      +|++||++++++|+++||+||||||||+|+++|+++||+++++.++.++++++++|++|||||||+||++++.|+++|+.
T Consensus       123 AV~~A~ea~~~~p~~~Iy~lgeIIHNp~Vv~~L~~~GV~~I~~~~~~~~~~~v~~gdvVIirAHGvs~~~~~~l~~kg~~  202 (460)
T PLN02821        123 AVQIAYEARKQFPDEKLWITNEIIHNPTVNKRLEEMNVQFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKNVQ  202 (460)
T ss_pred             HHHHHHHHHhhCCCCCeEEecCCccCHHHHHHHHHCCCEEecccccccccccCCCCCEEEEeCCCCCHHHHHHHHHCCCe
Confidence            47899999888877899999999999999999999999999876666779999889999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeeccccCcEEEEcChHHHHHhhhhhcCCCCCCCCChHHHHHH
Q 019556           81 IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLE  160 (339)
Q Consensus        81 iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  160 (339)
                      |||||||||+|+|+.|+++.++||++||+|+++||||+|+.||+++++||.+++|++++|+||.+|.+|||+++++.|++
T Consensus       203 IVDaTCP~V~KV~~~v~k~~k~gy~iII~Gk~~HpEv~gt~s~a~~~~VV~~~~ea~~v~~yi~~~~~~~~~~~~~~f~~  282 (460)
T PLN02821        203 IVDTTCPWVSKVWNTVEKHKKKDYTSVIHGKYAHEETVATASFAGKYIIVKNMKEATYVCDYILGGQLDGSSGTKEEFLE  282 (460)
T ss_pred             EEecCCcchHHHHHHHHHHHhCCCEEEEECCCCCcceeecccccCCeEEECCHHHHHHHhhhcccccccccccchhhhhh
Confidence            99999999999999999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhC
Q 019556          161 KFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEK  240 (339)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~  240 (339)
                      +|+++++++|||+.+++++++++||||+.++|++|++.|+++|++++++.+.+.||.+|||||+||++||+|+++|+.++
T Consensus       283 ~f~~a~s~~fdpd~~l~kvgvvnQTTm~~~et~~I~~~l~~~~~~k~gp~~~~~~~~vfnTIC~ATqeRQdA~~~L~~~~  362 (460)
T PLN02821        283 KFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIGKLLEKTMMQKYGVENVNDHFMSFNTICDATQERQDAMYKLVEEK  362 (460)
T ss_pred             hhcccccccCCcccccccEEEEECCCCcHHHHHHHHHHHHHhhhhhcCCcccCccccccCCcchhHHHHHHHHHHHhhcC
Confidence            99999999999877789999999999999999999999999999999998788999999999999999999999996468


Q ss_pred             CcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHHHH
Q 019556          241 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAV  320 (339)
Q Consensus       241 vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI  320 (339)
                      +|+||||||+|||||+||+|||++.|+|+||||+++||++.+.++|++.|+|..++.+||+.+..+||||||||||+|+|
T Consensus       363 vDlmiVVGG~NSSNT~~L~eIa~~~g~~sy~Ie~~~eI~~~~~i~h~~~~~e~~~~~~wl~~~~~~VGITAGASTPd~lI  442 (460)
T PLN02821        363 LDLMLVVGGWNSSNTSHLQEIAEHKGIPSYWIDSEERIGPGNTIAHKLNHGELVEKENWLPEGPVTIGVTSGASTPDKVV  442 (460)
T ss_pred             CCEEEEECCCCCccHHHHHHHHHHhCCCEEEECCHHHcCcccccccccccchhhhhHHHhccCCCEEEEecCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999976789999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhc
Q 019556          321 EDVLKKVFEIKREEALQL  338 (339)
Q Consensus       321 ~eVi~~l~~~~~~~~~~~  338 (339)
                      ++|+++|.++...+++|+
T Consensus       443 eeVi~~l~~~~~~~~~~~  460 (460)
T PLN02821        443 EDVLDKVFDIKREEALQL  460 (460)
T ss_pred             HHHHHHHHHhhccccccC
Confidence            999999999988888875

>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) Back     alignment and domain information
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids Back     alignment and domain information
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed Back     alignment and domain information
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism] Back     alignment and domain information
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed Back     alignment and domain information
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids Back     alignment and domain information
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) Back     alignment and domain information
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed Back     alignment and domain information
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional Back     alignment and domain information
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems Back     alignment and domain information
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed Back     alignment and domain information
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt Back     alignment and domain information
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK08057 cobalt-precorrin-6x reductase; Reviewed Back     alignment and domain information
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
3dnf_A297 Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diph 7e-19
4eb3_A327 Crystal Structure Of Isph In Complex With Iso-hmbpp 2e-15
4h4c_A323 Isph In Complex With (e)-4-fluoro-3-methylbut-2-eny 2e-15
3zgl_A332 Crystal Structures Of Escherichia Coli Isph In Comp 2e-15
3f7t_A328 Structure Of Active Isph Shows A Novel Fold With A 2e-15
3urk_A324 Isph In Complex With Propynyl Diphosphate (1061) Le 2e-15
3ke8_A326 Crystal Structure Of Isph:hmbpp-Complex Length = 32 2e-15
3szu_A328 Isph:hmbpp Complex Structure Of E126q Mutant Length 5e-15
3t0f_A328 Isph:hmbpp (Substrate) Structure Of The E126d Mutan 6e-15
3t0g_A328 Isph:hmbpp (Substrate) Structure Of The T167c Mutan 8e-15
>pdb|3DNF|A Chain A, Structure Of (e)-4-hydroxy-3-methyl-but-2-enyl Diphosphate Reductase, The Terminal Enzyme Of The Non-mevalonate Pathway Length = 297 Back     alignment and structure 
Iteration: 1

 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 144/319 (45%), Gaps = 74/319 (23%)
Query: 16  KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLN 75
           K++    IIHNP    RL+ + V     EE K+       GD V++ + G   E+   L 
Sbjct: 33  KVYTLGPIIHNPQEVNRLKNLGVFPSQGEEFKE-------GDTVIIRSHGIPPEKEEALR 85
Query: 76  NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVK 131
            K ++++D TCP+V  V  +V +  +  Y  ++ G+ +H E + T  +     GK I+V+
Sbjct: 86  KKGLKVIDATCPYVKAVHEAVCQLTREGYFVVLVGEKNHPEVIGTLGYLRACNGKGIVVE 145
Query: 132 NMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGE 191
            +++              G +   E                     +VGI  QTT    +
Sbjct: 146 TLEDI-------------GEALKHE---------------------RVGIVAQTT----Q 167
Query: 192 TEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWN 251
            EE  K V   +     V+ V       NTIC+AT  RQ+++ K+  E VD+++++GG N
Sbjct: 168 NEEFFKEVVGEIA--LWVKEVK----VINTICNATSLRQESVKKLAPE-VDVMIIIGGKN 220
Query: 252 SSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITS 311
           S NT  L  I+++    +Y I++ + + P                  W  +G   +GI++
Sbjct: 221 SGNTRRLYYISKELNPNTYHIETAEELQP-----------------EWF-RGVKRVGISA 262
Query: 312 GASTPDKAVEDVLKKVFEI 330
           GASTPD  +E V  ++ EI
Sbjct: 263 GASTPDWIIEQVKSRIQEI 281
>pdb|4EB3|A Chain A, Crystal Structure Of Isph In Complex With Iso-hmbpp Length = 327 Back     alignment and structure
>pdb|4H4C|A Chain A, Isph In Complex With (e)-4-fluoro-3-methylbut-2-enyl Diphosphate Length = 323 Back     alignment and structure
>pdb|3ZGL|A Chain A, Crystal Structures Of Escherichia Coli Isph In Complex With Ambpp A Potent Inhibitor Of The Methylerythritol Phosphate Pathway Length = 332 Back     alignment and structure
>pdb|3F7T|A Chain A, Structure Of Active Isph Shows A Novel Fold With A [3fe-4s] Cluster In The Catalytic Centre Length = 328 Back     alignment and structure
>pdb|3URK|A Chain A, Isph In Complex With Propynyl Diphosphate (1061) Length = 324 Back     alignment and structure
>pdb|3KE8|A Chain A, Crystal Structure Of Isph:hmbpp-Complex Length = 326 Back     alignment and structure
>pdb|3SZU|A Chain A, Isph:hmbpp Complex Structure Of E126q Mutant Length = 328 Back     alignment and structure
>pdb|3T0F|A Chain A, Isph:hmbpp (Substrate) Structure Of The E126d Mutant Length = 328 Back     alignment and structure
>pdb|3T0G|A Chain A, Isph:hmbpp (Substrate) Structure Of The T167c Mutant Length = 328 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
3dnf_A297 ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha 1e-48
3szu_A328 ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red 1e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus} Length = 297 Back     alignment and structure
 Score =  164 bits (417), Expect = 1e-48
 Identities = 80/335 (23%), Positives = 149/335 (44%), Gaps = 75/335 (22%)

Query: 4   IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 63
           +A E+ K+  + K++    IIHNP    RL+ + V      +     +   +GD V++ +
Sbjct: 22  LAEESLKES-QGKVYTLGPIIHNPQEVNRLKNLGVF---PSQ----GEEFKEGDTVIIRS 73

Query: 64  FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATA-- 121
            G   E+   L  K ++++D TCP+V  V  +V +  +  Y  ++ G+ +H E + T   
Sbjct: 74  HGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGYFVVLVGEKNHPEVIGTLGY 133

Query: 122 --SFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKV 179
             +  GK I+V+ +++           E                         +    +V
Sbjct: 134 LRACNGKGIVVETLEDIG---------EAL---------------------KHE----RV 159

Query: 180 GIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEE 239
           GI  QTT  +   +E+   V + +          +     NTIC+AT  RQ+++ K+  E
Sbjct: 160 GIVAQTTQNEEFFKEV---VGE-IALWV------KEVKVINTICNATSLRQESVKKLAPE 209

Query: 240 KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENW 299
            VD+++++GG NS NT  L  I+++    +Y I++ + +                 +  W
Sbjct: 210 -VDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEEL-----------------QPEW 251

Query: 300 LPKGQITIGITSGASTPDKAVEDVLKKVFEIKREE 334
             +G   +GI++GASTPD  +E V  ++ EI   +
Sbjct: 252 F-RGVKRVGISAGASTPDWIIEQVKSRIQEICEGQ 285
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A* Length = 328 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
3dnf_A297 ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha 100.0
3szu_A328 ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red 100.0
3szu_A328 ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate red 92.48
3dnf_A 297 ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphospha 91.85
1vq8_F120 50S ribosomal protein L7AE; ribosome 50S, protein- 85.16
3k4h_A 292 Putative transcriptional regulator; structural gen 83.38
1rlg_A119 50S ribosomal protein L7AE; protein-RNA, structura 83.27
3dbi_A 338 Sugar-binding transcriptional regulator, LACI FAM; 83.18
3huu_A 305 Transcription regulator like protein; PSI-II, NYSG 81.86
3k9c_A 289 Transcriptional regulator, LACI family protein; PS 81.59
1xbi_A120 50S ribosomal protein L7AE; alpha-beta-alpha sandw 80.73
3qk7_A 294 Transcriptional regulators; structural genomics, N 80.56
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus} Back     alignment and structure
Probab=100.00  E-value=1.3e-92  Score=677.30  Aligned_cols=264  Identities=29%  Similarity=0.483  Sum_probs=243.4

Q ss_pred             ChhHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCc
Q 019556            1 MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ   80 (339)
Q Consensus         1 ~v~~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~   80 (339)
                      +|++|+++++++ +++||++|||||||+|+++|+++|+.++++       +++++|++|||||||+||+++++|+++|++
T Consensus        19 AI~~a~~al~~~-~~~iy~~g~IVHN~~Vv~~L~~~Gv~~v~~-------~ev~~g~~VIirAHGv~~~v~~~a~~rgl~   90 (297)
T 3dnf_A           19 AVKLAEESLKES-QGKVYTLGPIIHNPQEVNRLKNLGVFPSQG-------EEFKEGDTVIIRSHGIPPEKEEALRKKGLK   90 (297)
T ss_dssp             HHHHHHHHTTTC-CSCEEESSCSSSCHHHHHHHHHHTEEECCS-------SCCCTTCEEEECTTCCCHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHHhc-CCCEEEeCCcccCHHHHHHHHhCCCEEech-------hhCCCCCEEEEECCCCCHHHHHHHHHCCCE
Confidence            478899998876 568999999999999999999999999974       678889999999999999999999999999


Q ss_pred             EEeCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeecccc---C-cEEEEcChHHHHHhhhhhcCCCCCCCCChHH
Q 019556           81 IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA---G-KYIIVKNMKEAEYVCDYILGGELNGSSSTKE  156 (339)
Q Consensus        81 iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~---~-~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~  156 (339)
                      |||||||||+|+|++|++++++||+|||||+++||||+|++||+   + +++||++++|++.|.                
T Consensus        91 iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~g~~~~~~~~~~vV~~~ed~~~l~----------------  154 (297)
T 3dnf_A           91 VIDATCPYVKAVHEAVCQLTREGYFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIGEAL----------------  154 (297)
T ss_dssp             EEECCCHHHHHHHHHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHTTCCEEEESSGGGGGGGG----------------
T ss_pred             EEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCceEEeeccccccCCCcEEEEcCHHHHHhcC----------------
Confidence            99999999999999999999999999999999999999999999   4 689999999998761                


Q ss_pred             HHHHHHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHh
Q 019556          157 AFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKM  236 (339)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~l  236 (339)
                                        +++++++++||||+.++|.+|++.|+++||          ++.++|||||||++||+|+++|
T Consensus       155 ------------------~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p----------~~~~~~tIC~AT~~RQ~av~~l  206 (297)
T 3dnf_A          155 ------------------KHERVGIVAQTTQNEEFFKEVVGEIALWVK----------EVKVINTICNATSLRQESVKKL  206 (297)
T ss_dssp             ------------------GCSEEEEEECTTCCHHHHHHHHHHHHHHSS----------EEEEECCCCSHHHHHHHHHHHH
T ss_pred             ------------------CCCcEEEEEecCCcHHHHHHHHHHHHHhCC----------CCCCCCCccHHHHHHHHHHHHH
Confidence                              126999999999999999999999988644          3668999999999999999999


Q ss_pred             hhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCc
Q 019556          237 VEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTP  316 (339)
Q Consensus       237 a~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP  316 (339)
                      | +++|+||||||+|||||+||+|+|++.|+++||||+++||++                 +|| .++.+||||||||||
T Consensus       207 a-~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~-----------------~wl-~~~~~VGITAGASTP  267 (297)
T 3dnf_A          207 A-PEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQP-----------------EWF-RGVKRVGISAGASTP  267 (297)
T ss_dssp             G-GGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEESSGGGCCG-----------------GGG-TTCSEEEEEECTTCC
T ss_pred             H-hhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEeCChHHCCH-----------------HHh-CCCCEEEEeecCCCC
Confidence            8 789999999999999999999999999999999999999999                 999 699999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhh
Q 019556          317 DKAVEDVLKKVFEIKREEA  335 (339)
Q Consensus       317 ~~lI~eVi~~l~~~~~~~~  335 (339)
                      +|||++|+++|+++.+..+
T Consensus       268 ~~li~eVi~~l~~~~~~~~  286 (297)
T 3dnf_A          268 DWIIEQVKSRIQEICEGQL  286 (297)
T ss_dssp             HHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHhccCCe
Confidence            9999999999999866544
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A* Back     alignment and structure
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A* Back     alignment and structure
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus} Back     alignment and structure
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ... Back     alignment and structure
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} Back     alignment and structure
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1 Back     alignment and structure
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} Back     alignment and structure
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus} Back     alignment and structure
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii} Back     alignment and structure
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A Back     alignment and structure
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
d1p3da196 UDP-N-acetylmuramate-alanine ligase MurC {Haemophi 84.54
>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=84.54  E-value=2.4  Score=31.42  Aligned_cols=60  Identities=15%  Similarity=0.183  Sum_probs=39.4

Q ss_pred             eEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHH--HHHHHHhcCCcEE
Q 019556           17 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVE--EMVTLNNKNVQIV   82 (339)
Q Consensus        17 Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~--~~~~l~~~g~~ii   82 (339)
                      -.+--+.-.||.+ ++|+++|+.+....    +-+.+++-|.| |.+=++|.+  ++.+++++|+.|+
T Consensus        34 ~VsGSD~~~~~~~-~~L~~~Gi~v~~g~----~~~~i~~~d~v-V~S~AI~~~npel~~A~~~gipii   95 (96)
T d1p3da1          34 QISGSDIADGVVT-QRLAQAGAKIYIGH----AEEHIEGASVV-VVSSAIKDDNPELVTSKQKRIPVI   95 (96)
T ss_dssp             EEEEEESCCSHHH-HHHHHTTCEEEESC----CGGGGTTCSEE-EECTTSCTTCHHHHHHHHTTCCEE
T ss_pred             EEEEEeCCCChhh-hHHHHCCCeEEECC----ccccCCCCCEE-EECCCcCCCCHHHHHHHHcCCCEE
Confidence            3444477778766 67888999876532    12334444555 445568754  6888999999886