Citrus Sinensis ID: 019626

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MSSFWVSCVFRRSRFLKPSLSLLLSGNNKPSNPILNPKLNPHIAKLTNHDRWVPNSEQNFRYVWVASICTTPSQSSVEKETSSSNEKSSWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLLVVFCSSRLLSLVIV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHEEcHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccccccHHHEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccEcccHcccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcEEEEEccccccEEcEcHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mssfwvscvfrrsrflkpslslllsgnnkpsnpilnpklnphiakltnhdrwvpnseqnFRYVWVASIcttpsqssveketsssneksswidlYLPRQARAYAKLARLdkpigtwllawpcmwsitmaaprghfpdfkmMALFGCGALllrgagctvndlldrdidnmvertrlrpvasglltpfqglsfLGFQLLLGLGILLQLNNFSRILGASSLLLVFsyplmkrftfwpqaylgltfnWGALLGWAAVKGSLDLAVVFPMYISGVFwtldkeddlkvgvkstalrfgdsskewttGFGIACISSLALSGYNADIGIYLLLVVFCSSRLLSLVIV
Flexible Loop (DISEMBL)
mssfwvscVFRRSRFLKPSLSLLLSGNNKPSNPILNPKLNPHIAKLTNHDRWVPNSEQNFRYVWVASICTtpsqssveketsssneksswidLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLDKEDDLKVGVKStalrfgdsskewtTGFGIACISSLALSGYNADIGIYLLLVVFCSSRLLSLVIV
Low Complexity Region (SEG)
MSSFWVSCVFRRSRFLKPSLSLLLSGNNKPSNPILNPKLNPHIAKLTNHDRWVPNSEQNFRYVWVASICTTPsqssveketsssnekssWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMalfgcgalllrgagCTVNDLLDRDIDNMVERTRLRPVASGLLTPfqglsflgfqlllglgillqlNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLLVVFCSSRLLSLVIV
Disordered region (IsUnstruct)
***FWVSCVFRRSRFLKPSLSLLL**************LNPHIAKLTNHDRWVPNSEQNFRYVWVASICT*******************WIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLLVVFCSSRLLSLVI*
Disordered Region (DISOPRED)
********VFRRSRFLKP**SL********************************************************************IDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLLVVFCSSRLLSLVIV
Disordered Region (DISEMBL)
MSSFWVSCVFRRSRFLKPSLSLLLSGNNKPSNPILNPKLNPHIAKLTNHDRWVPNSEQNFRYVWVASICTT*****************SWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLLVVFCSSRLLSLVIV
Disordered Region (DISPRO)
***FWVSCVFRRSRFLKPSLSLLLSGNNKPSNPILNPKLNPHIAKL*NHD***********************************EKSSWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLLVVFCSSRLLSLVIV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSFWVSCVFRRSRFLKPSLSLLLSGNNKPSNPILNPKLNPHIAKLTNHDRWVPNSEQNFRYVWVASICTTPSQSSVEKETSSSNEKSSWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTLDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLLVVFCSSRLLSLVIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	338	2.2.26 [Sep-21-2011]
Q93YP7	407	4-hydroxybenzoate polypre	yes	no	0.855	0.710	0.634	1e-93
Q8W404	306	4-hydroxybenzoate geranyl	N/A	no	0.757	0.836	0.5	2e-72
Q499N4	374	4-hydroxybenzoate polypre	yes	no	0.644	0.582	0.594	5e-72
Q8W405	307	4-hydroxybenzoate geranyl	N/A	no	0.757	0.833	0.492	1e-71
Q9VHS7	392	4-hydroxybenzoate polypre	yes	no	0.715	0.617	0.521	5e-71
Q66JT7	374	4-hydroxybenzoate polypre	yes	no	0.650	0.588	0.580	7e-71
Q96H96	371	4-hydroxybenzoate polypre	no	no	0.653	0.595	0.573	4e-70
Q298G6	397	4-hydroxybenzoate polypre	yes	no	0.644	0.549	0.563	1e-69
Q2KIQ4	371	4-hydroxybenzoate polypre	yes	no	0.653	0.595	0.565	3e-68
Q16QL3	441	4-hydroxybenzoate polypre	N/A	no	0.627	0.480	0.556	9e-65

>sp|Q93YP7|4HPT_ARATH 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Arabidopsis thaliana GN=PPT1 PE=2 SV=1

 Score =  343 bits (880), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 201/317 (63%), Positives = 230/317 (72%), Gaps = 28/317 (8%)

Query: 31  SNPILNPKLNPHIAKL----TNHDRWVP----NSEQNFRYVWVAS-ICTTPSQSSV---- 77
           SNP+     NP          N+  W      + E+ F   W    IC   S SSV    
Sbjct: 37  SNPVTTHYTNPFTKCYPSWNDNYQVWSKGRELHQEKFFGVGWNYRLICGMSSSSSVLEGK 96

Query: 78  ------EKETSSSNEKSSWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPR 131
                 EK      +++SWIDLYLP + R YAKLARLDKPIGTWLLAWPCMWSI +AA  
Sbjct: 97  PKKDDKEKSDGVVVKEASWIDLYLPEEVRGYAKLARLDKPIGTWLLAWPCMWSIALAADP 156

Query: 132 GHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFL 191
           G  P FK MALFGCGALLLRGAGCT+NDLLD+DID  V+RT+LRP+ASGLLTPFQG+ FL
Sbjct: 157 GSLPSFKYMALFGCGALLLRGAGCTINDLLDQDIDTKVDRTKLRPIASGLLTPFQGIGFL 216

Query: 192 GFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAA 251
           G QLLLGLGILLQLNN+SR+LGASSLLLVFSYPLMKRFTFWPQA+LGLT NWGALLGW A
Sbjct: 217 GLQLLLGLGILLQLNNYSRVLGASSLLLVFSYPLMKRFTFWPQAFLGLTINWGALLGWTA 276

Query: 252 VKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFG 302
           VKGS+  ++V P+Y+SGV WTL         DKEDD+KVGVKSTALRFGD++K W TGFG
Sbjct: 277 VKGSIAPSIVLPLYLSGVCWTLVYDTIYAHQDKEDDVKVGVKSTALRFGDNTKLWLTGFG 336

Query: 303 IACISSLALSGYNADIG 319
            A I  LALSG++AD+G
Sbjct: 337 TASIGFLALSGFSADLG 353

Involved in coenzyme Q (CoQ) biosynthesis. Catalyzes the prenylation of para-hydroxybenzoate (PHB) with a polyprenyl group. Required for embryo development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 3EC: 9

>sp|Q8W404|PGT2_LITER 4-hydroxybenzoate geranyltransferase 2 OS=Lithospermum erythrorhizon GN=PGT-2 PE=1 SV=1

 Score =  272 bits (696), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/268 (50%), Positives = 184/268 (68%), Gaps = 12/268 (4%)

Query: 76  SVEKETSSSNEKSSWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFP 135
           S ++      ++ SWI++YLP++ R YA LARLDKPIG+WLLAWP  WS+ + A  G  P
Sbjct: 2   SSKQTQLKKGKQPSWIEIYLPKEVRPYAHLARLDKPIGSWLLAWPAFWSVALIADLGSLP 61

Query: 136 DFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQL 195
             KM+A+FG  A+ +RGAGCT+ND  DRD D  VERT+ RP+ASG ++P +GL +L FQL
Sbjct: 62  --KMLAIFGWWAVWIRGAGCTINDYFDRDFDKKVERTKSRPLASGAVSPAKGLWWLAFQL 119

Query: 196 LLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGS 255
            +GLG+L Q N  +  L    +  VF+YPLMKR T+WPQA+LG+  +WGALLG +A+KGS
Sbjct: 120 FIGLGVLYQFNILTLALAIVHVPFVFAYPLMKRITYWPQAFLGVMISWGALLGSSALKGS 179

Query: 256 LDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACI 306
           +  ++ +P+YIS  FWTL         DK DD K G+KSTALRFGD++K W T FGI CI
Sbjct: 180 VVPSIAYPLYISSFFWTLVYDTIYAHQDKVDDAKAGIKSTALRFGDATKIWITWFGIGCI 239

Query: 307 SSLALSGYNADIGI-YLLLVVFCSSRLL 333
            +L L G+  +IG+ Y + +   + +L+
Sbjct: 240 GALLLGGFIVNIGLPYYVFLAIATGQLI 267

Prenyltransferase involved in the biosynthesis of shikonin, a naphthoquinone secondary metabolite. Could accept only geranyl diphosphate and not dimethylallyl diphosphate, farnesyl diphosphate, or geranylgeranyl diphosphate as substrate.

Lithospermum erythrorhizon (taxid: 34254)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 3

>sp|Q499N4|COQ2_RAT 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Rattus norvegicus GN=Coq2 PE=2 SV=1

 Score =  271 bits (693), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 135/227 (59%), Positives = 168/227 (74%), Gaps = 9/227 (3%)

Query: 96  PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGC 155
           PR  + Y +L RLDKPIGTWLL  PC WSI +AA  G FPD+ M++LFG GA+L+RGAGC
Sbjct: 68  PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAADPGCFPDWYMLSLFGTGAILMRGAGC 127

Query: 156 TVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGAS 215
           T+ND+ DRD D  VERT  RP+A+G ++ FQ   FLG QL L LG+LL LN +S  +GA+
Sbjct: 128 TINDMWDRDFDKKVERTANRPIAAGDISAFQSFVFLGAQLTLALGVLLHLNYYSIAMGAA 187

Query: 216 SLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL-- 273
           SLLLV +YPLMKR TFWPQ  LGLTFNWGALLGW+AVKGS D AV  P+Y SGV WTL  
Sbjct: 188 SLLLVVTYPLMKRVTFWPQLALGLTFNWGALLGWSAVKGSCDPAVCLPLYFSGVMWTLIY 247

Query: 274 -------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSG 313
                  DK+DD  +G+KSTAL F +++K+W +GFG+A + +L+L G
Sbjct: 248 DTIYAHQDKKDDALIGLKSTALLFRENTKQWLSGFGVAMVGALSLVG 294

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q8W405|PGT1_LITER 4-hydroxybenzoate geranyltransferase 1 OS=Lithospermum erythrorhizon GN=PGT-1 PE=1 SV=1

 Score =  270 bits (689), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 132/268 (49%), Positives = 184/268 (68%), Gaps = 12/268 (4%)

Query: 76  SVEKETSSSNEKSSWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFP 135
           S ++      ++ SWI++YLP++ R YA LARLDKPIG+WLLAWP  WS+ +AA     P
Sbjct: 3   SSKQTQLKKGKQPSWIEMYLPKEVRPYAHLARLDKPIGSWLLAWPAFWSVALAADLESLP 62

Query: 136 DFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQL 195
             KM+A+FG  A+ +RGAGCT+ND  DR+ D  VERT+ RP+ASG ++P QGL +L FQL
Sbjct: 63  --KMLAIFGWWAVWIRGAGCTINDYFDRNFDKKVERTKSRPLASGAVSPAQGLWWLAFQL 120

Query: 196 LLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGS 255
            +GLG+L Q N  +  L    +  VF+YPLMKR T+WPQA+LG+  +WGALLG +A+KGS
Sbjct: 121 FIGLGVLYQFNVLTLALAIVHVPFVFAYPLMKRITYWPQAFLGVMISWGALLGSSALKGS 180

Query: 256 LDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACI 306
           +  ++ +P+YIS  FWTL         DK DD K G+KSTALRFGD++K W + FG+ CI
Sbjct: 181 VVPSIAYPLYISSFFWTLVYDTIYAHQDKVDDAKAGIKSTALRFGDATKMWISWFGVGCI 240

Query: 307 SSLALSGYNADIGI-YLLLVVFCSSRLL 333
           ++L + G   +IG+ Y + V   + +L+
Sbjct: 241 AALVIGGLILNIGLPYYVFVAIATGQLV 268

Prenyltransferase involved in the biosynthesis of shikonin, a naphthoquinone secondary metabolite. Could accept only geranyl diphosphate and not dimethylallyl diphosphate, farnesyl diphosphate, or geranylgeranyl diphosphate as substrate.

Lithospermum erythrorhizon (taxid: 34254)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 3

>sp|Q9VHS7|COQ2_DROME 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila melanogaster GN=Coq2 PE=2 SV=1

 Score =  268 bits (685), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 136/261 (52%), Positives = 182/261 (69%), Gaps = 19/261 (7%)

Query: 68  ICTTPSQSSVE--KETSSSNEKSSWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSI 125
           +C+  S ++ E  K+ +   E        L   A+ YA+L R+D+PIGT+LL WPC WSI
Sbjct: 52  VCSRSSSTATEPVKQQTPLQE--------LVSAAKPYAQLMRIDRPIGTYLLFWPCAWSI 103

Query: 126 TMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPF 185
            ++A  G +PD  M+ LFG GAL++RGAGCT+NDL D+DID  VERTRLRP+ASG ++ F
Sbjct: 104 ALSADAGCWPDLTMLGLFGTGALIMRGAGCTINDLWDKDIDAKVERTRLRPLASGQISQF 163

Query: 186 QGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGA 245
             + FL  QL LGL +L+QLN  S +LGASSL LV +YPLMKR T+WPQ  LG+ FNWGA
Sbjct: 164 DAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGLVITYPLMKRVTYWPQLVLGMAFNWGA 223

Query: 246 LLGWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKE 296
           LLGW A +GS++LA   P+Y+SGV WT+         DK DDL++GVKSTALRFG+++K 
Sbjct: 224 LLGWCATQGSVNLAACLPLYLSGVCWTIVYDTIYAHQDKLDDLQIGVKSTALRFGENTKV 283

Query: 297 WTTGFGIACISSLALSGYNAD 317
           W +GF  A ++ L+ +G+  D
Sbjct: 284 WLSGFTAAMLTGLSAAGWACD 304

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q66JT7|COQ2_MOUSE 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Mus musculus GN=Coq2 PE=2 SV=2

 Score =  267 bits (683), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 133/229 (58%), Positives = 170/229 (74%), Gaps = 9/229 (3%)

Query: 96  PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGC 155
           PR  + Y +L RLDKPIGTWLL  PC WSI +AA  G FPD+ M++LFG GA+L+RGAGC
Sbjct: 68  PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAADPGCFPDWYMLSLFGTGAILMRGAGC 127

Query: 156 TVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGAS 215
           T+ND+ DRD D  V RT  RP+A+G ++ FQ   FLG QL L LG+LL LN +S  +GA+
Sbjct: 128 TINDMWDRDFDKKVTRTANRPIAAGDISTFQSFVFLGGQLTLALGVLLCLNYYSIAMGAA 187

Query: 216 SLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL-- 273
           SLLLV +YPL+KR TFWPQ  LGLTFNWGALLGW+AVKGS D AV  P+Y SGV WTL  
Sbjct: 188 SLLLVVTYPLVKRITFWPQLALGLTFNWGALLGWSAVKGSCDPAVCLPLYFSGVMWTLIY 247

Query: 274 -------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYN 315
                  DK+DD  +G+KSTAL F +++++W +GFG+A +++L+L+G N
Sbjct: 248 DTIYAHQDKKDDALIGLKSTALLFQENTRQWLSGFGVAMVAALSLAGAN 296

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q96H96|COQ2_HUMAN 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Homo sapiens GN=COQ2 PE=1 SV=1

 Score =  265 bits (677), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 132/230 (57%), Positives = 168/230 (73%), Gaps = 9/230 (3%)

Query: 96  PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGC 155
           PR  + Y +L RLDKPIGTWLL  PC WSI +AA  G FPD+ M++LFG GA+L+RGAGC
Sbjct: 68  PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAAEPGCFPDWYMLSLFGTGAILMRGAGC 127

Query: 156 TVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGAS 215
           T+ND+ D+D D  V RT  RP+A+G ++ FQ   FLG QL L LG+LL LN +S  LGA 
Sbjct: 128 TINDMWDQDYDKKVTRTANRPIAAGDISTFQSFVFLGGQLTLALGVLLCLNYYSIALGAG 187

Query: 216 SLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL-- 273
           SLLLV +YPLMKR ++WPQ  LGLTFNWGALLGW+A+KGS D +V  P+Y SGV WTL  
Sbjct: 188 SLLLVITYPLMKRISYWPQLALGLTFNWGALLGWSAIKGSCDPSVCLPLYFSGVMWTLIY 247

Query: 274 -------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNA 316
                  DK DD+ +G+KSTALRFG+++K W +GF +A + +L+L G N+
Sbjct: 248 DTIYAHQDKRDDVLIGLKSTALRFGENTKPWLSGFSVAMLGALSLVGVNS 297

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q298G6|COQ2_DROPS 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=coq2 PE=3 SV=1

 Score =  263 bits (672), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/227 (56%), Positives = 168/227 (74%), Gaps = 9/227 (3%)

Query: 100 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVND 159
           + YA+L R+D+PIGT+LL WPC WSI ++A  G +PD  M+ LFG GAL++RGAGCT+ND
Sbjct: 84  KPYAQLMRIDRPIGTYLLFWPCAWSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTIND 143

Query: 160 LLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLL 219
           L D+DID  VERTR RP+ASG ++ F  + FL  QL LGL +L+QLN  S +LGASSL L
Sbjct: 144 LWDKDIDAKVERTRTRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGL 203

Query: 220 VFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL------ 273
           V +YPLMKR T+WPQ  LG+ FNWGALLGW A +GS++LA   P+Y+SGV WT+      
Sbjct: 204 VITYPLMKRVTYWPQLVLGMAFNWGALLGWCATQGSVNLAACLPLYLSGVCWTIVYDTIY 263

Query: 274 ---DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNAD 317
              DK DDL++GVKSTALRFG+++K W +GF  A ++ L+ +G+  D
Sbjct: 264 AHQDKLDDLQIGVKSTALRFGENTKVWLSGFTAAMLTGLSTAGWACD 310

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q2KIQ4|COQ2_BOVIN 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Bos taurus GN=COQ2 PE=2 SV=1

 Score =  258 bits (660), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 130/230 (56%), Positives = 166/230 (72%), Gaps = 9/230 (3%)

Query: 96  PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGC 155
           PR  + Y +L RLDKPIGTWLL  PC WSI +AA  G  PD+ M++LFG GA+L+RGAGC
Sbjct: 68  PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAADPGCLPDWYMLSLFGTGAVLMRGAGC 127

Query: 156 TVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGAS 215
           T+ND+ DRD D  V RT  RP+A+G ++ F+   FLG QL L LG+LL LN +S  LGA+
Sbjct: 128 TINDMWDRDYDKKVTRTASRPIAAGDISTFRSFVFLGGQLTLALGVLLCLNYYSIALGAA 187

Query: 216 SLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL-- 273
           SLLLV +YPLMKR T+WPQ  LGLTFNWGALLGW+AVKGS D +V  P+Y SG+ WTL  
Sbjct: 188 SLLLVTTYPLMKRITYWPQLALGLTFNWGALLGWSAVKGSCDPSVCLPLYFSGIMWTLIY 247

Query: 274 -------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNA 316
                  DK+DD  +G+KSTAL F + +K+W +GF +A + +L+L G N+
Sbjct: 248 DTIYAHQDKKDDALIGLKSTALLFREDTKKWLSGFSVAMLGALSLVGVNS 297

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q16QL3|COQ2_AEDAE 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Aedes aegypti GN=coq2 PE=3 SV=1

 Score =  247 bits (630), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 123/221 (55%), Positives = 156/221 (70%), Gaps = 9/221 (4%)

Query: 102 YAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLL 161
           YA+L R+D+PIG+WLL WPC WSI ++AP G +PD   + LFG GA ++RGAGCT+ND+ 
Sbjct: 119 YARLMRIDRPIGSWLLFWPCGWSIALSAPAGCWPDLWTLTLFGAGAFIMRGAGCTINDMW 178

Query: 162 DRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVF 221
           DRDID  V RTR RP+ +G LT      FLG QL +GL ILL+LN +S +LGASSL LV 
Sbjct: 179 DRDIDGKVARTRNRPLVAGELTSADAWFFLGAQLGVGLLILLELNWYSIVLGASSLGLVI 238

Query: 222 SYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL-------- 273
            YPLMKR T WPQ  LG+TFNWGALLGW+A +GS+  +   P+Y++GV WT+        
Sbjct: 239 IYPLMKRITHWPQLVLGMTFNWGALLGWSATQGSVMWSACLPLYVAGVCWTIVYDTIYAH 298

Query: 274 -DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSG 313
            DK DD  +G+KSTA+RFGD++K W +GF  A I  L  SG
Sbjct: 299 QDKVDDALLGIKSTAIRFGDNTKLWLSGFSTAMIGGLVASG 339

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Aedes aegypti (taxid: 7159)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
224081375	294	predicted protein [Populus trichocarpa]	0.683	0.785	0.837	1e-110
356566810	466	PREDICTED: 4-hydroxybenzoate polyprenylt	0.896	0.650	0.666	1e-105
255561866	387	4-hydroxybenzoate octaprenyltransferase,	0.852	0.744	0.685	1e-104
225423769	412	PREDICTED: 4-hydroxybenzoate polyprenylt	0.781	0.640	0.731	1e-102
297737930	371	unnamed protein product [Vitis vinifera]	0.781	0.711	0.731	1e-101
357506705	400	Para-hydroxybenzoate-polyprenyltransfera	0.923	0.78	0.643	1e-101
388521479	400	unknown [Medicago truncatula]	0.923	0.78	0.637	1e-99
449508409	394	PREDICTED: 4-hydroxybenzoate polyprenylt	0.757	0.649	0.737	2e-96
449461685	394	PREDICTED: 4-hydroxybenzoate polyprenylt	0.757	0.649	0.737	2e-96
224081373	299	predicted protein [Populus trichocarpa]	0.689	0.779	0.702	6e-95

>gi|224081375|ref|XP_002306388.1| predicted protein [Populus trichocarpa] gi|222855837|gb|EEE93384.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/240 (83%), Positives = 214/240 (89%), Gaps = 9/240 (3%)

Query: 89  SWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGAL 148
           SWID+YLPRQ R YA LARLDKPIGTWLLAWPCMWSI++AA  G  P+FKMMALFGCGAL
Sbjct: 1   SWIDVYLPRQVRPYAHLARLDKPIGTWLLAWPCMWSISLAAEPGSVPNFKMMALFGCGAL 60

Query: 149 LLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNF 208
           LLRGAGCT+NDLLDRDID  VERT+LRPVASGLLTPFQGL FLGFQL LGLGILLQLNN+
Sbjct: 61  LLRGAGCTINDLLDRDIDTKVERTKLRPVASGLLTPFQGLCFLGFQLFLGLGILLQLNNY 120

Query: 209 SRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISG 268
           SRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGW+AVKGSLD A+V P+Y SG
Sbjct: 121 SRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWSAVKGSLDPAIVIPLYASG 180

Query: 269 VFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIG 319
           VFWTL         DKEDDLKVGVKSTALRFGDS+KEW TGFG ACISSLAL G++ADIG
Sbjct: 181 VFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSTKEWITGFGTACISSLALCGFDADIG 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566810|ref|XP_003551620.1| PREDICTED: 4-hydroxybenzoate polyprenyltransferase, mitochondrial-like [Glycine max]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/327 (66%), Positives = 248/327 (75%), Gaps = 24/327 (7%)

Query: 14  RFLKPSLS-----------LLLSGNNKPSNPILNPKLN-PHIAKLTNHDRWVPNSEQNFR 61
           RFLKP  S           ++ S  +   NP  NP    P +       R    S  +F 
Sbjct: 12  RFLKPCSSSVSLYPAIFNPVISSQQSASQNPSQNPPFKLPQLQSFNFEFRKTTGSLSSFH 71

Query: 62  YVWVASICTTPSQSSVEKETSSSNEKSSWIDLYLPRQARAYAKLARLDKPIGTWLLAWPC 121
            V  A + T PS+ + +   S  N  SSW++LYLPR+ + YA+LARLDKPIGTWLL WPC
Sbjct: 72  LV--AHVSTWPSKEN-KNHQSGGNVSSSWVELYLPRKVQPYARLARLDKPIGTWLLLWPC 128

Query: 122 MWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL 181
           MWSIT+A   GH PDFKM+ALFGCGALLLRGAGCT+NDLLDRDID MVERT+LRPVASGL
Sbjct: 129 MWSITLATTPGHLPDFKMLALFGCGALLLRGAGCTINDLLDRDIDTMVERTKLRPVASGL 188

Query: 182 LTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTF 241
           LTPFQGL FLGFQLLLGLGILLQLNN+SR+LGASSLLLVFSYPLMKRFTFWPQA+LGLTF
Sbjct: 189 LTPFQGLCFLGFQLLLGLGILLQLNNYSRVLGASSLLLVFSYPLMKRFTFWPQAFLGLTF 248

Query: 242 NWGALLGWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGD 292
           NWGALLGWAA+KGSLD ++V P+Y SGVFWTL         DKEDDLKVGVKSTALRFGD
Sbjct: 249 NWGALLGWAAIKGSLDPSIVLPLYASGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGD 308

Query: 293 SSKEWTTGFGIACISSLALSGYNADIG 319
           S+KEW TGFGIAC+  LA+SG+NA+IG
Sbjct: 309 STKEWITGFGIACLGGLAVSGFNAEIG 335

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561866|ref|XP_002521942.1| 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis] gi|223538867|gb|EEF40466.1| 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/312 (68%), Positives = 246/312 (78%), Gaps = 24/312 (7%)

Query: 29  KPSNPILNPKLNPHIAKLTNHDRWVP-----------NSEQNFRYVW-VASICTTPSQSS 76
           KP++ ++       + K T    WVP           +   N R+V  ++++ ++ ++ +
Sbjct: 44  KPTDIVIR---TASLNKFTQSYYWVPPNFEFSREIHKSDSSNLRFVGGISTLSSSKNKDN 100

Query: 77  VEKETSSSNEKSSWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPD 136
            E    S   ++SWI+LYLPR A+ YA+LARLDKPIGTWLLAWPCMWSI++AA  GH PD
Sbjct: 101 QENGGLSKERETSWINLYLPRHAQPYARLARLDKPIGTWLLAWPCMWSISLAASPGHLPD 160

Query: 137 FKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLL 196
           FKMM LFGCGALLLRGAGCTVNDLLDRDID  VERT+LRPVASGLL+PFQGLSFLGFQLL
Sbjct: 161 FKMMVLFGCGALLLRGAGCTVNDLLDRDIDTKVERTKLRPVASGLLSPFQGLSFLGFQLL 220

Query: 197 LGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSL 256
           LGLGILLQLNN+SRILGASSL LVFSYPLMKR TFWPQAYLGLTFNWGALLGW+A+KGSL
Sbjct: 221 LGLGILLQLNNYSRILGASSLFLVFSYPLMKRLTFWPQAYLGLTFNWGALLGWSAIKGSL 280

Query: 257 DLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACIS 307
           D AVV P+Y+SGVFWTL         DKEDDLKVGVKSTALRFGDS+KEW TGFGIACI 
Sbjct: 281 DPAVVLPLYMSGVFWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDSTKEWITGFGIACIG 340

Query: 308 SLALSGYNADIG 319
           SLALSG NA+IG
Sbjct: 341 SLALSGVNANIG 352

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423769|ref|XP_002279483.1| PREDICTED: 4-hydroxybenzoate polyprenyltransferase, mitochondrial [Vitis vinifera]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/290 (73%), Positives = 235/290 (81%), Gaps = 26/290 (8%)

Query: 56  SEQNFRYVWVASIC------TTPSQSSVEKETSSSN-----------EKSSWIDLYLPRQ 98
           S +NF++    SIC      +T S    EK+                +  SWIDLYLP+Q
Sbjct: 69  SRENFKFGQCGSICRFGAGISTSSSGVAEKDDEDRGRDDGGGERPKVQDLSWIDLYLPKQ 128

Query: 99  ARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVN 158
           AR YA+LARLDKPIGTWLLAWPCMWSIT+AA  GHFPD KM+ALFG GALLLRGAGCT+N
Sbjct: 129 ARPYARLARLDKPIGTWLLAWPCMWSITLAANPGHFPDIKMLALFGTGALLLRGAGCTIN 188

Query: 159 DLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLL 218
           DLLD+DID  VERT+LRP+ASG+LTPFQGLSFLGFQLLLGLGILLQLNN SRILGASSLL
Sbjct: 189 DLLDQDIDPKVERTKLRPIASGILTPFQGLSFLGFQLLLGLGILLQLNNDSRILGASSLL 248

Query: 219 LVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL----- 273
           LVFSYPLMKR TFWPQAYLGLTFNWGALLGW+AV+GSLD A+VFP+YISGV WTL     
Sbjct: 249 LVFSYPLMKRLTFWPQAYLGLTFNWGALLGWSAVRGSLDPAIVFPLYISGVCWTLVYDTI 308

Query: 274 ----DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIG 319
               DKEDDLKVGVKSTALRFGDS+KEW +GFGIACISSLALSG+NAD+G
Sbjct: 309 YAHQDKEDDLKVGVKSTALRFGDSTKEWLSGFGIACISSLALSGFNADLG 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737930|emb|CBI27131.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/290 (73%), Positives = 235/290 (81%), Gaps = 26/290 (8%)

Query: 56  SEQNFRYVWVASIC------TTPSQSSVEKETSSSN-----------EKSSWIDLYLPRQ 98
           S +NF++    SIC      +T S    EK+                +  SWIDLYLP+Q
Sbjct: 28  SRENFKFGQCGSICRFGAGISTSSSGVAEKDDEDRGRDDGGGERPKVQDLSWIDLYLPKQ 87

Query: 99  ARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVN 158
           AR YA+LARLDKPIGTWLLAWPCMWSIT+AA  GHFPD KM+ALFG GALLLRGAGCT+N
Sbjct: 88  ARPYARLARLDKPIGTWLLAWPCMWSITLAANPGHFPDIKMLALFGTGALLLRGAGCTIN 147

Query: 159 DLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLL 218
           DLLD+DID  VERT+LRP+ASG+LTPFQGLSFLGFQLLLGLGILLQLNN SRILGASSLL
Sbjct: 148 DLLDQDIDPKVERTKLRPIASGILTPFQGLSFLGFQLLLGLGILLQLNNDSRILGASSLL 207

Query: 219 LVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL----- 273
           LVFSYPLMKR TFWPQAYLGLTFNWGALLGW+AV+GSLD A+VFP+YISGV WTL     
Sbjct: 208 LVFSYPLMKRLTFWPQAYLGLTFNWGALLGWSAVRGSLDPAIVFPLYISGVCWTLVYDTI 267

Query: 274 ----DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIG 319
               DKEDDLKVGVKSTALRFGDS+KEW +GFGIACISSLALSG+NAD+G
Sbjct: 268 YAHQDKEDDLKVGVKSTALRFGDSTKEWLSGFGIACISSLALSGFNADLG 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506705|ref|XP_003623641.1| Para-hydroxybenzoate-polyprenyltransferase [Medicago truncatula] gi|355498656|gb|AES79859.1| Para-hydroxybenzoate-polyprenyltransferase [Medicago truncatula]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 227/353 (64%), Positives = 263/353 (74%), Gaps = 41/353 (11%)

Query: 1   MSSFWVSCVFRRSRFLKPSLSLLLSGNNKPS--NPILN--------PKLNPHIAKLTNHD 50
           M+S  +S  +RR  FLKPSL   LS    PS  NP+++        P  N  ++      
Sbjct: 1   MASALISRAWRR--FLKPSL---LSSGFTPSIFNPLISSQQCVDRYPSPNVSVSPFKPSQ 55

Query: 51  RWVPNSE--------QNFRYVWVASICTTPSQSSVEKET---SSSNEKS----SWIDLYL 95
             + N E         NF+ V    I T+PS+   +KE    SSSN  S    SW+DLYL
Sbjct: 56  FVIYNLEFCRSVGSLSNFQLV--VHISTSPSRLGQDKENKNQSSSNVSSGGDISWVDLYL 113

Query: 96  PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGC 155
           PR  + YA+LARLDKPIGTWLL WPC+WSIT+AAP GH PDFKM+ALFGCGA LLRGAGC
Sbjct: 114 PRLVQPYARLARLDKPIGTWLLLWPCVWSITLAAPPGHLPDFKMLALFGCGAFLLRGAGC 173

Query: 156 TVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGAS 215
           T+NDL+DRDID  VERT+LRPVASG+LTPFQGLSFLGFQLLLGLGILLQLNN+SR+LGAS
Sbjct: 174 TINDLIDRDIDTKVERTKLRPVASGILTPFQGLSFLGFQLLLGLGILLQLNNYSRVLGAS 233

Query: 216 SLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL-- 273
           SLLLVFSYPLMKRFTFWPQA+LGLTFNWGALLGWAA+KG+LD ++V P+Y SGV WTL  
Sbjct: 234 SLLLVFSYPLMKRFTFWPQAFLGLTFNWGALLGWAAIKGNLDSSIVLPLYASGVCWTLVY 293

Query: 274 -------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIG 319
                  DKEDDLKVGVKSTALRFGDS+KEW TGFGIA +S LALSG+NA++G
Sbjct: 294 DTIYAHQDKEDDLKVGVKSTALRFGDSTKEWLTGFGIASLSGLALSGFNAELG 346

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521479|gb|AFK48801.1| unknown [Medicago truncatula]

 Score =  369 bits (948), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 225/353 (63%), Positives = 261/353 (73%), Gaps = 41/353 (11%)

Query: 1   MSSFWVSCVFRRSRFLKPSLSLLLSGNNKPS--NPILN--------PKLNPHIAKLTNHD 50
           M+S  +S  +RR  FLKPSL   LS    PS  NP+++        P  N  ++      
Sbjct: 1   MASALISRAWRR--FLKPSL---LSSGFTPSIFNPLISSQQCVDRYPSPNVSVSPFKPSQ 55

Query: 51  RWVPNSE--------QNFRYVWVASICTTPSQSSVEKET---SSSNEKS----SWIDLYL 95
             + N E         NF+ V    I T+PS+   +KE    SSSN  S    SW+DLYL
Sbjct: 56  FVIYNLEFCRSVGSLSNFQLV--VHISTSPSRLGQDKENKNQSSSNVSSGGDISWVDLYL 113

Query: 96  PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGC 155
           PR  + YA+LARLDKPIGTWLL WPC+WSIT+AAP GH PDFKM+ALFGCGA LLRGAGC
Sbjct: 114 PRLVQPYARLARLDKPIGTWLLLWPCVWSITLAAPPGHLPDFKMLALFGCGAFLLRGAGC 173

Query: 156 TVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGAS 215
           T+NDL+DRDID  V RT+LRPVASG+LTPFQGLSFLGFQLLLGLGILLQLNN+SR+LGAS
Sbjct: 174 TINDLIDRDIDTKVVRTKLRPVASGILTPFQGLSFLGFQLLLGLGILLQLNNYSRVLGAS 233

Query: 216 SLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL-- 273
           SLLLVFSYPLMKRFTFWPQA+LGLTFNWGALLGWAA+KG+LD ++V P+Y SGV WTL  
Sbjct: 234 SLLLVFSYPLMKRFTFWPQAFLGLTFNWGALLGWAAIKGNLDSSIVLPLYASGVCWTLVY 293

Query: 274 -------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIG 319
                  DKEDDLKVGVKSTALRFGDS+K W TGFGIA +S LALSG+NA++G
Sbjct: 294 DTIYAHQDKEDDLKVGVKSTALRFGDSTKGWLTGFGIASLSGLALSGFNAELG 346

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449508409|ref|XP_004163305.1| PREDICTED: 4-hydroxybenzoate polyprenyltransferase, mitochondrial-like [Cucumis sativus]

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 197/267 (73%), Positives = 216/267 (80%), Gaps = 11/267 (4%)

Query: 71  TPSQSSVEKETSSSNEKSSWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAP 130
           +P  S      S +  + SWI LYLP++ + YA LARLDKPIGTWLLAWPCMWSIT+AAP
Sbjct: 83  SPYGSVKNDGKSEAKAEMSWISLYLPKKFQPYAHLARLDKPIGTWLLAWPCMWSITLAAP 142

Query: 131 RGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSF 190
            G  PDFKM+ LFGCGALLLRGAGCT+NDLLDRDID  VERT+LRPVASG LT  QG+SF
Sbjct: 143 PGQLPDFKMLTLFGCGALLLRGAGCTINDLLDRDIDTKVERTKLRPVASGQLTQPQGISF 202

Query: 191 LGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWA 250
           LG QL LGLGILLQLNN+SRILGASSLLLVFSYPLMKRFT+WPQAYLGLTFNWGALLGWA
Sbjct: 203 LGLQLFLGLGILLQLNNYSRILGASSLLLVFSYPLMKRFTYWPQAYLGLTFNWGALLGWA 262

Query: 251 AVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGF 301
           A++G+LD A+V P+Y SGVFWTL         DK DDLKVGVKSTALRFGDS+KEW T F
Sbjct: 263 AIRGTLDPAIVLPLYFSGVFWTLVYDTIYAHQDKGDDLKVGVKSTALRFGDSTKEWITMF 322

Query: 302 GIACISSLALSGYNADIG--IYLLLVV 326
           GIA I  LALSGYNADIG   Y LL  
Sbjct: 323 GIANIGCLALSGYNADIGWPFYALLAA 349

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461685|ref|XP_004148572.1| PREDICTED: 4-hydroxybenzoate polyprenyltransferase, mitochondrial-like [Cucumis sativus]

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 197/267 (73%), Positives = 216/267 (80%), Gaps = 11/267 (4%)

Query: 71  TPSQSSVEKETSSSNEKSSWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAP 130
           +P  S      S +  + SWI LYLP++ + YA LARLDKPIGTWLLAWPCMWSIT+AAP
Sbjct: 83  SPYGSVKNDGKSEAKAEMSWISLYLPKKFQPYAHLARLDKPIGTWLLAWPCMWSITLAAP 142

Query: 131 RGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSF 190
            G  PDFKM+ LFGCGALLLRGAGCT+NDLLDRDID  VERT+LRPVASG LT  QG+SF
Sbjct: 143 PGQLPDFKMLTLFGCGALLLRGAGCTINDLLDRDIDTKVERTKLRPVASGQLTQPQGISF 202

Query: 191 LGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWA 250
           LG QL LGLGILLQLNN+SRILGASSLLLVFSYPLMKRFT+WPQAYLGLTFNWGALLGWA
Sbjct: 203 LGLQLFLGLGILLQLNNYSRILGASSLLLVFSYPLMKRFTYWPQAYLGLTFNWGALLGWA 262

Query: 251 AVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGF 301
           A++G+LD A+V P+Y SGVFWTL         DK DDLKVGVKSTALRFGDS+KEW T F
Sbjct: 263 AIRGTLDPAIVLPLYFSGVFWTLVYDTIYAHQDKGDDLKVGVKSTALRFGDSTKEWITMF 322

Query: 302 GIACISSLALSGYNADIG--IYLLLVV 326
           GIA I  LALSGYNADIG   Y LL  
Sbjct: 323 GIANIGCLALSGYNADIGWPFYALLAA 349

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081373|ref|XP_002306387.1| predicted protein [Populus trichocarpa] gi|222855836|gb|EEE93383.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (906), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 170/242 (70%), Positives = 200/242 (82%), Gaps = 9/242 (3%)

Query: 87  KSSWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCG 146
           K SW+D+YLPRQ R YA LAR+DK IGTWLLAWP MWSIT+AA  G+ PD+KM+ LF  G
Sbjct: 4   KVSWVDVYLPRQVRPYAHLARIDKQIGTWLLAWPTMWSITLAAAPGNLPDYKMIGLFALG 63

Query: 147 ALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLN 206
           +LL+R   CT+ND+LDRDID  V+RT+ RP+ASG+L P QG+ FLGFQL LGLGILLQLN
Sbjct: 64  SLLVRSIACTINDILDRDIDAKVDRTKRRPLASGVLKPSQGVLFLGFQLFLGLGILLQLN 123

Query: 207 NFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYI 266
           N+SR+LG  S+ LVF+YPLMKRFT+WPQAYLG TF+WGALLGW+AVKGSLD A+V P+Y 
Sbjct: 124 NYSRVLGVLSMFLVFTYPLMKRFTYWPQAYLGFTFSWGALLGWSAVKGSLDPAIVLPLYA 183

Query: 267 SGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNAD 317
           SG+FWTL         DKEDDLKVGVKSTAL FGDS+KEW +GFGIACI  LALSG+NAD
Sbjct: 184 SGIFWTLVYDTIYAHQDKEDDLKVGVKSTALLFGDSTKEWISGFGIACIGGLALSGFNAD 243

Query: 318 IG 319
           +G
Sbjct: 244 LG 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
ZFIN|ZDB-GENE-070410-84	378	coq2 "coenzyme Q2 homolog, pre	0.656	0.587	0.502	1.4e-55
UNIPROTKB|E2QT06	368	COQ2 "Uncharacterized protein"	0.653	0.600	0.478	7.8e-55
RGD|1306722	374	Coq2 "coenzyme Q2 homolog, pre	0.644	0.582	0.493	1.3e-54
UNIPROTKB|F1RVD9	371	COQ2 "Uncharacterized protein"	0.656	0.598	0.471	2.6e-54
MGI|MGI:1919133	374	Coq2 "coenzyme Q2 homolog, pre	0.650	0.588	0.480	5.5e-54
FB|FBgn0037574	392	Coq2 "Coenzyme Q biosynthesis	0.647	0.558	0.478	1.1e-53
UNIPROTKB|E2QRG7	328	COQ2 "4-hydroxybenzoate polypr	0.653	0.673	0.473	1.1e-53
UNIPROTKB|Q96H96	371	COQ2 "4-hydroxybenzoate polypr	0.653	0.595	0.473	1.1e-53
UNIPROTKB|Q298G6	397	coq2 "4-hydroxybenzoate polypr	0.644	0.549	0.471	1e-52
UNIPROTKB|F1N1G6	371	COQ2 "4-hydroxybenzoate polypr	0.653	0.595	0.469	2.7e-52

ZFIN|ZDB-GENE-070410-84 coq2 "coenzyme Q2 homolog, prenyltransferase (yeast)" [Danio rerio (taxid:7955)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 116/231 (50%), Positives = 141/231 (61%)

Query:    96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMXXXXXXXXXXXXXXC 155
             P   + Y +L RLDKPIGTWLL  PC WSI +AA  G  PD +M+              C
Sbjct:    76 PASVQPYLRLMRLDKPIGTWLLYLPCTWSIGLAADPGCLPDLRMLTLFGVGALLMRGAGC 135

Query:   156 TVNDLLDRDIDNMVERTRLRPVASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGAS 215
             T+ND+ D+D D  V RT  RP+ASG +T                      N +S  LGA+
Sbjct:   136 TINDMWDKDFDKKVSRTATRPIASGDITRFQALVFLGGQLSLALGVLLSLNYYSIALGAA 195

Query:   216 SLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL-- 273
             SL LV +YPLMKR T+WPQ  LGLTFNWGALLGW+AVKGS D +V  P+Y+SGV WTL  
Sbjct:   196 SLSLVVTYPLMKRITYWPQFILGLTFNWGALLGWSAVKGSCDWSVCLPLYVSGVMWTLIY 255

Query:   274 -------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNAD 317
                    DK+DDLKVGVKSTALRF +++K W +GF  A +S L L+G NAD
Sbjct:   256 DTIYAHQDKDDDLKVGVKSTALRFQENTKLWLSGFTGAMLSGLLLAGVNAD 306

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|E2QT06 COQ2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 110/230 (47%), Positives = 143/230 (62%)

Query:    96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMXXXXXXXXXXXXXXC 155
             PR  + Y +L RLDKPIGTWLL  PC WSI +AA  G FPD+ M+              C
Sbjct:    66 PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAAEPGCFPDWYMLSLFGTGAVLMRGAGC 125

Query:   156 TVNDLLDRDIDNMVERTRLRPVASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGAS 215
             T+ND+ DRD D  V RT  RP+A+G ++                      N +S  LGA+
Sbjct:   126 TINDMWDRDYDKKVIRTANRPIAAGDISTFQSFIFLGGQLTLALGILLCLNYYSIALGAA 185

Query:   216 SLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL-- 273
             SLLLV +YPLMKR T+WPQ  LGLTFNWGALLGW+A+KGS DL++  P+Y SG+ WTL  
Sbjct:   186 SLLLVITYPLMKRITYWPQLALGLTFNWGALLGWSAIKGSCDLSICLPLYFSGIMWTLIY 245

Query:   274 -------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNA 316
                    DK DD  +G+KSTALRF +++K+W +GFG+A + +L+L G N+
Sbjct:   246 DTIYAHQDKRDDALIGLKSTALRFQENTKQWLSGFGVAMLGALSLVGVNS 295

GO:0006071 "glycerol metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

RGD|1306722 Coq2 "coenzyme Q2 homolog, prenyltransferase (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 112/227 (49%), Positives = 141/227 (62%)

Query:    96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMXXXXXXXXXXXXXXC 155
             PR  + Y +L RLDKPIGTWLL  PC WSI +AA  G FPD+ M+              C
Sbjct:    68 PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAADPGCFPDWYMLSLFGTGAILMRGAGC 127

Query:   156 TVNDLLDRDIDNMVERTRLRPVASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGAS 215
             T+ND+ DRD D  VERT  RP+A+G ++                      N +S  +GA+
Sbjct:   128 TINDMWDRDFDKKVERTANRPIAAGDISAFQSFVFLGAQLTLALGVLLHLNYYSIAMGAA 187

Query:   216 SLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL-- 273
             SLLLV +YPLMKR TFWPQ  LGLTFNWGALLGW+AVKGS D AV  P+Y SGV WTL  
Sbjct:   188 SLLLVVTYPLMKRVTFWPQLALGLTFNWGALLGWSAVKGSCDPAVCLPLYFSGVMWTLIY 247

Query:   274 -------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSG 313
                    DK+DD  +G+KSTAL F +++K+W +GFG+A + +L+L G
Sbjct:   248 DTIYAHQDKKDDALIGLKSTALLFRENTKQWLSGFGVAMVGALSLVG 294

GO:0002083 "4-hydroxybenzoate decaprenyltransferase activity" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006071 "glycerol metabolic process" evidence=IEA;ISO

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA;ISO

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0047293 "4-hydroxybenzoate nonaprenyltransferase activity" evidence=IEA

UNIPROTKB|F1RVD9 COQ2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 109/231 (47%), Positives = 143/231 (61%)

Query:    96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMXXXXXXXXXXXXXXC 155
             PR  + Y +L RLDKPIGTWLL  PC WSI +AA  G FPD+ M+              C
Sbjct:    68 PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAAEPGCFPDWCMLSLFGTGAVLMRGAGC 127

Query:   156 TVNDLLDRDIDNMVERTRLRPVASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGAS 215
             T+ND+ D+D D  V RT  RP+A+G ++                      N++S  LGAS
Sbjct:   128 TINDMWDQDYDKKVTRTASRPIAAGDISTFQSFVFLGAQLTLALGVLLCLNHYSIALGAS 187

Query:   216 SLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL-- 273
             SLLLV +YPLMKR T+WPQ  LGLTFNWGALLGW+A+KGS + +V  P+Y SG+ WTL  
Sbjct:   188 SLLLVITYPLMKRITYWPQLALGLTFNWGALLGWSAIKGSCEPSVCLPLYFSGIMWTLIY 247

Query:   274 -------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNAD 317
                    DK+DD  +G+KSTALRF + +K+W +GF +A + +L+L G N+D
Sbjct:   248 DTIYAHQDKKDDALIGLKSTALRFREDTKQWLSGFSVAMLGALSLVGVNSD 298

GO:0006071 "glycerol metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

MGI|MGI:1919133 Coq2 "coenzyme Q2 homolog, prenyltransferase (yeast)" [Mus musculus (taxid:10090)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 110/229 (48%), Positives = 143/229 (62%)

Query:    96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMXXXXXXXXXXXXXXC 155
             PR  + Y +L RLDKPIGTWLL  PC WSI +AA  G FPD+ M+              C
Sbjct:    68 PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAADPGCFPDWYMLSLFGTGAILMRGAGC 127

Query:   156 TVNDLLDRDIDNMVERTRLRPVASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGAS 215
             T+ND+ DRD D  V RT  RP+A+G ++                      N +S  +GA+
Sbjct:   128 TINDMWDRDFDKKVTRTANRPIAAGDISTFQSFVFLGGQLTLALGVLLCLNYYSIAMGAA 187

Query:   216 SLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL-- 273
             SLLLV +YPL+KR TFWPQ  LGLTFNWGALLGW+AVKGS D AV  P+Y SGV WTL  
Sbjct:   188 SLLLVVTYPLVKRITFWPQLALGLTFNWGALLGWSAVKGSCDPAVCLPLYFSGVMWTLIY 247

Query:   274 -------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYN 315
                    DK+DD  +G+KSTAL F +++++W +GFG+A +++L+L+G N
Sbjct:   248 DTIYAHQDKKDDALIGLKSTALLFQENTRQWLSGFGVAMVAALSLAGAN 296

GO:0002083 "4-hydroxybenzoate decaprenyltransferase activity" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0006071 "glycerol metabolic process" evidence=ISO

GO:0006744 "ubiquinone biosynthetic process" evidence=ISO

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0047293 "4-hydroxybenzoate nonaprenyltransferase activity" evidence=IEA

FB|FBgn0037574 Coq2 "Coenzyme Q biosynthesis protein 2" [Drosophila melanogaster (taxid:7227)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 109/228 (47%), Positives = 144/228 (63%)

Query:    99 ARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMXXXXXXXXXXXXXXCTVN 158
             A+ YA+L R+D+PIGT+LL WPC WSI ++A  G +PD  M+              CT+N
Sbjct:    77 AKPYAQLMRIDRPIGTYLLFWPCAWSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTIN 136

Query:   159 DLLDRDIDNMVERTRLRPVASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLL 218
             DL D+DID  VERTRLRP+ASG ++                      N  S +LGASSL 
Sbjct:   137 DLWDKDIDAKVERTRLRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLG 196

Query:   219 LVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL----- 273
             LV +YPLMKR T+WPQ  LG+ FNWGALLGW A +GS++LA   P+Y+SGV WT+     
Sbjct:   197 LVITYPLMKRVTYWPQLVLGMAFNWGALLGWCATQGSVNLAACLPLYLSGVCWTIVYDTI 256

Query:   274 ----DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNAD 317
                 DK DDL++GVKSTALRFG+++K W +GF  A ++ L+ +G+  D
Sbjct:   257 YAHQDKLDDLQIGVKSTALRFGENTKVWLSGFTAAMLTGLSAAGWACD 304

GO:0008412 "4-hydroxybenzoate octaprenyltransferase activity" evidence=ISS

GO:0006743 "ubiquinone metabolic process" evidence=ISS

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IDA

GO:0048009 "insulin-like growth factor receptor signaling pathway" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0050830 "defense response to Gram-positive bacterium" evidence=IMP

GO:0050829 "defense response to Gram-negative bacterium" evidence=IMP

UNIPROTKB|E2QRG7 COQ2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 109/230 (47%), Positives = 141/230 (61%)

Query:    96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMXXXXXXXXXXXXXXC 155
             PR  + Y +L RLDKPIGTWLL  PC WSI +AA  G FPD+ M+              C
Sbjct:    68 PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAAEPGCFPDWYMLSLFGTGAILMRGAGC 127

Query:   156 TVNDLLDRDIDNMVERTRLRPVASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGAS 215
             T+ND+ D+D D  V RT  RP+A+G ++                      N +S  LGA 
Sbjct:   128 TINDMWDQDYDKKVTRTANRPIAAGDISTFQSFVFLGGQLTLALGVLLCLNYYSIALGAG 187

Query:   216 SLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL-- 273
             SLLLV +YPLMKR ++WPQ  LGLTFNWGALLGW+A+KGS D +V  P+Y SGV WTL  
Sbjct:   188 SLLLVITYPLMKRISYWPQLALGLTFNWGALLGWSAIKGSCDPSVCLPLYFSGVMWTLIY 247

Query:   274 -------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNA 316
                    DK DD+ +G+KSTALRFG+++K W +GF +A + +L+L G N+
Sbjct:   248 DTIYAHQDKRDDVLIGLKSTALRFGENTKPWLSGFSVAMLGALSLVGVNS 297

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q96H96 COQ2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 109/230 (47%), Positives = 141/230 (61%)

Query:    96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMXXXXXXXXXXXXXXC 155
             PR  + Y +L RLDKPIGTWLL  PC WSI +AA  G FPD+ M+              C
Sbjct:    68 PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAAEPGCFPDWYMLSLFGTGAILMRGAGC 127

Query:   156 TVNDLLDRDIDNMVERTRLRPVASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGAS 215
             T+ND+ D+D D  V RT  RP+A+G ++                      N +S  LGA 
Sbjct:   128 TINDMWDQDYDKKVTRTANRPIAAGDISTFQSFVFLGGQLTLALGVLLCLNYYSIALGAG 187

Query:   216 SLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL-- 273
             SLLLV +YPLMKR ++WPQ  LGLTFNWGALLGW+A+KGS D +V  P+Y SGV WTL  
Sbjct:   188 SLLLVITYPLMKRISYWPQLALGLTFNWGALLGWSAIKGSCDPSVCLPLYFSGVMWTLIY 247

Query:   274 -------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNA 316
                    DK DD+ +G+KSTALRFG+++K W +GF +A + +L+L G N+
Sbjct:   248 DTIYAHQDKRDDVLIGLKSTALRFGENTKPWLSGFSVAMLGALSLVGVNS 297

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0002083 "4-hydroxybenzoate decaprenyltransferase activity" evidence=IEA

GO:0047293 "4-hydroxybenzoate nonaprenyltransferase activity" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=RCA

GO:0006071 "glycerol metabolic process" evidence=IGI

GO:0016021 "integral to membrane" evidence=RCA

UNIPROTKB|Q298G6 coq2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 107/227 (47%), Positives = 142/227 (62%)

Query:   100 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMXXXXXXXXXXXXXXCTVND 159
             + YA+L R+D+PIGT+LL WPC WSI ++A  G +PD  M+              CT+ND
Sbjct:    84 KPYAQLMRIDRPIGTYLLFWPCAWSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTIND 143

Query:   160 LLDRDIDNMVERTRLRPVASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGASSLLL 219
             L D+DID  VERTR RP+ASG ++                      N  S +LGASSL L
Sbjct:   144 LWDKDIDAKVERTRTRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGL 203

Query:   220 VFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL------ 273
             V +YPLMKR T+WPQ  LG+ FNWGALLGW A +GS++LA   P+Y+SGV WT+      
Sbjct:   204 VITYPLMKRVTYWPQLVLGMAFNWGALLGWCATQGSVNLAACLPLYLSGVCWTIVYDTIY 263

Query:   274 ---DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNAD 317
                DK DDL++GVKSTALRFG+++K W +GF  A ++ L+ +G+  D
Sbjct:   264 AHQDKLDDLQIGVKSTALRFGENTKVWLSGFTAAMLTGLSTAGWACD 310

GO:0005666 "DNA-directed RNA polymerase III complex" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006383 "transcription from RNA polymerase III promoter" evidence=ISS

GO:0006744 "ubiquinone biosynthetic process" evidence=ISS

GO:0008412 "4-hydroxybenzoate octaprenyltransferase activity" evidence=ISS

GO:0016094 "polyprenol biosynthetic process" evidence=ISS

GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS

UNIPROTKB|F1N1G6 COQ2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 108/230 (46%), Positives = 139/230 (60%)

Query:    96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMXXXXXXXXXXXXXXC 155
             PR  + Y +L RLDKPIGTWLL  PC WSI +AA  G  PD+ M+              C
Sbjct:    68 PRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAADPGCLPDWYMLSLFGTGAVLMRGAGC 127

Query:   156 TVNDLLDRDIDNMVERTRLRPVASGLLTPXXXXXXXXXXXXXXXXXXXXXNNFSRILGAS 215
             T+ND+ DRD D  V RT  RP+A+G ++                      N +S  LGA+
Sbjct:   128 TINDMWDRDYDKKVTRTASRPIAAGDISTFRSFVFLGGQLTLALGVLLCLNYYSIALGAA 187

Query:   216 SLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL-- 273
             SLLLV +YPLMKR T+WPQ  LGLTFNWGALLGW+AVKGS D +V  P+Y SG+ WTL  
Sbjct:   188 SLLLVTTYPLMKRITYWPQLALGLTFNWGALLGWSAVKGSCDPSVCLPLYFSGIMWTLIY 247

Query:   274 -------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNA 316
                    DK+DD  +G+KSTAL F + +K+W +GF +A + +L+L G N+
Sbjct:   248 DTIYAHQDKKDDALIGLKSTALLFREDTKKWLSGFSVAMLGALSLVGVNS 297

GO:0006071 "glycerol metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93YP7	4HPT_ARATH	2, ., 5, ., 1, ., 3, 9	0.6340	0.8550	0.7100	yes	no
Q8I7J4	COQ2_CAEEL	2, ., 5, ., 1, ., 3, 9	0.5324	0.6568	0.6235	yes	no
Q9VHS7	COQ2_DROME	2, ., 5, ., 1, ., 3, 9	0.5210	0.7159	0.6173	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.V.3372.1	4-hydroxybenzoate nonaprenyltransferase (EC-2.5.1.39) (294 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00012780	annotation not avaliable (326 aa)						•	•		0.812
	gw1.2627.7.1	Predicted protein (172 aa)	•					•	•		0.806
	gw1.66.323.1	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)						•			0.800
	grail3.0001010701	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (454 aa)						•			0.800
	fgenesh4_pg.C_scaffold_129000030	geranylgeranyl reductase (CHL P) (210 aa)						•			0.800
	eugene3.00120625	SubName- Full=Putative uncharacterized protein; (470 aa)						•			0.800
	gw1.XIV.1527.1	hexaprenyldihydroxybenzoate methyltransferase (EC-2.1.1.114) (250 aa)			•				•		0.768
	gw1.I.7552.1	hypothetical protein (456 aa)			•				•		0.628
	estExt_fgenesh4_pm.C_LG_XVIII0270	hypothetical protein (289 aa)	•		•				•		0.592
	DHQS6	SubName- Full=Putative uncharacterized protein; (375 aa)							•		0.510

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	338
PLN02809	289	PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltr	1e-154
TIGR01474	281	TIGR01474, ubiA_proteo, 4-hydroxybenzoate polypren	7e-94
PRK12878	314	PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransf	1e-92
PRK12848	282	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransf	4e-73
PRK12847	285	PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransf	8e-67
PRK12870	290	PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransf	2e-63
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	3e-54
PRK12873	294	PRK12873, ubiA, prenyltransferase; Reviewed	9e-30
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	2e-21
TIGR01475	282	TIGR01475, ubiA_other, putative 4-hydroxybenzoate	2e-20
TIGR01473	280	TIGR01473, cyoE_ctaB, protoheme IX farnesyltransfe	7e-17
COG0109	304	COG0109, CyoE, Polyprenyltransferase (cytochrome o	7e-16
PRK04375	296	PRK04375, PRK04375, protoheme IX farnesyltransfera	6e-15
PRK13106	300	PRK13106, ubiA, prenyltransferase; Reviewed	3e-11
PRK13362	306	PRK13362, PRK13362, protoheme IX farnesyltransfera	1e-10
PRK12886	291	PRK12886, ubiA, prenyltransferase; Reviewed	3e-10
PRK12888	284	PRK12888, ubiA, prenyltransferase; Reviewed	1e-09
PRK12869	279	PRK12869, ubiA, protoheme IX farnesyltransferase;	3e-09
PRK12876	300	PRK12876, ubiA, prenyltransferase; Reviewed	6e-07
PRK12874	291	PRK12874, ubiA, prenyltransferase; Reviewed	1e-06
PLN02776	341	PLN02776, PLN02776, prenyltransferase	9e-06
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	2e-04
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	3e-04
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	6e-04
PRK08238	479	PRK08238, PRK08238, hypothetical protein; Validate	0.002

>gnl|CDD|178405 PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltransferase

 Score =  433 bits (1116), Expect = e-154
 Identities = 188/235 (80%), Positives = 200/235 (85%), Gaps = 9/235 (3%)

Query: 94  YLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGA 153
           YLP   R YAKLARLDKPIGTWLLAWPCMWSI +AAP G  PD KM+ALFGCGALLLRGA
Sbjct: 1   YLPPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKMLALFGCGALLLRGA 60

Query: 154 GCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILG 213
           GCT+NDLLDRDID  VERT+LRP+ASG LTPFQG+ FLG QLLLGLGILLQLNN+SRILG
Sbjct: 61  GCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG 120

Query: 214 ASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL 273
           ASSLLLVF+YPLMKRFTFWPQA+LGLTFNWGALLGWAAVKGSLD AVV P+Y SGV WTL
Sbjct: 121 ASSLLLVFTYPLMKRFTFWPQAFLGLTFNWGALLGWAAVKGSLDPAVVLPLYASGVCWTL 180

Query: 274 ---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIG 319
                    DKEDDLKVGVKSTALRFGD +K W TGFG A I  LALSGYNA +G
Sbjct: 181 VYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTGFGAASIGGLALSGYNAGLG 235

Length = 289

>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase, proteobacterial

 Score =  280 bits (718), Expect = 7e-94
 Identities = 124/236 (52%), Positives = 158/236 (66%), Gaps = 11/236 (4%)

Query: 100 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVND 159
             YAKL R DKPIGT LL WPC+WS+ +AA  G  P   ++ LF  GA+L+RGAGC +ND
Sbjct: 2   LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVGAILMRGAGCVIND 61

Query: 160 LLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLL 219
           + DRD D  VERT+ RP+ASG ++  Q + FL  QLL+ LG+LLQLN  + +LG +SL L
Sbjct: 62  IWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVASLAL 121

Query: 220 VFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL------ 273
           V +YP MKR T+WPQ  LGL F WGAL+GWAAV G L  A    +Y++ + WTL      
Sbjct: 122 VATYPFMKRITYWPQLVLGLAFGWGALMGWAAVTGDLSTAAWV-LYLANILWTLGYDTIY 180

Query: 274 ---DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIG-IYLLLV 325
              DKEDD+K+GVKSTALRFGD++K W  G     I  LAL+G  A +G +Y L +
Sbjct: 181 AMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGLGPVYYLGL 236

This model represents a family of integral membrane proteins that condenses para-hydroxybenzoate with any of several polyprenyldiphosphates. Heterologous expression studies suggest that for, many but not all members, the activity seen (e.g. octaprenyltransferase in E. coli) reflects available host isoprenyl pools rather than enzyme specificity. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 281

>gnl|CDD|183808 PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score =  278 bits (713), Expect = 1e-92
 Identities = 119/271 (43%), Positives = 157/271 (57%), Gaps = 13/271 (4%)

Query: 70  TTPSQSSVEKETSSSNEKSSWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAA 129
            +  QSS      +     +W+D  LP   R YA+LAR D+PIG WLL WPC WS  +AA
Sbjct: 1   MSMIQSSDATGRVADAPSGNWVDRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAA 60

Query: 130 ---PRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQ 186
                        + LF  GA+ +RGAGCT ND++DRDID  V RTR RP+ SG ++  Q
Sbjct: 61  GAAADLGLLLLWHLFLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQ 120

Query: 187 GLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGAL 246
              F+  Q L+GL +LLQ N F+  LG +SL +V +YP MKR T+WPQ +LGL F+WGAL
Sbjct: 121 AKVFMVLQALVGLAVLLQFNWFAIALGIASLAIVAAYPFMKRITWWPQFFLGLAFSWGAL 180

Query: 247 LGWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEW 297
           +GWAA  GSL LA V  +Y   + WT+         DKEDD  +GVKSTA  FGD +K W
Sbjct: 181 MGWAAHFGSLSLAAVL-LYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTW 239

Query: 298 TTGFGIACISSLALSGYNADIGIYLLLVVFC 328
              F    +  + L+ + A + +  LL +  
Sbjct: 240 LVLFYGLAVLLMGLAFWLAGVPLLALLGLLA 270

Length = 314

>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed

 Score =  227 bits (581), Expect = 4e-73
 Identities = 92/247 (37%), Positives = 141/247 (57%), Gaps = 16/247 (6%)

Query: 95  LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAG 154
           L  +  AYA+L RLDKPIGT LL WP +W++ +AA     PD  ++ +F  G  L+R AG
Sbjct: 1   LQNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAA--DGIPDLWVLVVFVLGVFLMRAAG 58

Query: 155 CTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGA 214
           C +ND  DRD D  V+RT+ RP+ASG ++  + L+     +L+   ++L LN  +  L  
Sbjct: 59  CVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSV 118

Query: 215 SSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL- 273
           ++L L + YP MKR+T  PQ  LG  F WG  + +AAV+GS+ L     ++++ + WT+ 
Sbjct: 119 AALALAWIYPFMKRYTHLPQVVLGAAFGWGIPMAFAAVQGSVPLEAWL-LFLANILWTVA 177

Query: 274 --------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIY---- 321
                   D++DDLK+G+KSTA+ FG   K       +A ++ LA +G+   +G      
Sbjct: 178 YDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLGLGWAYYWG 237

Query: 322 LLLVVFC 328
           LL+    
Sbjct: 238 LLVAAAL 244

Length = 282

>gnl|CDD|237228 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score =  211 bits (539), Expect = 8e-67
 Identities = 92/206 (44%), Positives = 133/206 (64%), Gaps = 11/206 (5%)

Query: 101 AYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDL 160
           AY KL RL KPIG  L+ +P ++ + +A+     PD  ++ LF  G++L+R AGC +ND+
Sbjct: 9   AYFKLMRLHKPIGILLVFFPTLFGLLLASH-SLLPDISLLVLFIIGSVLMRSAGCIINDI 67

Query: 161 LDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLV 220
            DR ID  V RT+ RP+ASG L+  Q L  L   LL+ L ILL LN  +  L   +++L+
Sbjct: 68  FDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFIAVILI 127

Query: 221 FSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL------- 273
             YPLMKRF +WPQ +LG TFN G L+ +AAV+  LD+  +  +YI  +FWT+       
Sbjct: 128 VLYPLMKRFFYWPQLFLGFTFNMGILMAFAAVQNQLDIEAIL-LYIGCIFWTIGYDTIYA 186

Query: 274 --DKEDDLKVGVKSTALRFGDSSKEW 297
             DK+DDLK+GVKSTA+ FG+ ++++
Sbjct: 187 YQDKKDDLKIGVKSTAIYFGNKTRKY 212

Length = 285

>gnl|CDD|237240 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score =  202 bits (516), Expect = 2e-63
 Identities = 85/230 (36%), Positives = 122/230 (53%), Gaps = 12/230 (5%)

Query: 100 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVND 159
            A  +L R DKP G  +L  P +W++ +AA  G  P   ++ +   GAL    AGC VND
Sbjct: 10  LAIIRLLRWDKPAGRLILMIPALWAVFLAA-HG-LPPLPLVGIIILGALATSAAGCVVND 67

Query: 160 LLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLL 219
           L DRDID  VERTR RP+AS  L+   G+      LL   G+   LN  S  L  +++ +
Sbjct: 68  LWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVAAVPV 127

Query: 220 VFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL------ 273
           +F YPL KR    PQ  L + + +  L+ W+AV G LDL     ++ + VFWTL      
Sbjct: 128 IFLYPLAKRVFPVPQLVLAIAWGFAVLISWSAVTGHLDLGTWL-LWAATVFWTLGFDTVY 186

Query: 274 ---DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGI 320
              D+EDDL++GV S+A+ FG  + E    F    +  LA+ G   ++ +
Sbjct: 187 AMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILGVLLELHL 236

Length = 290

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score =  179 bits (455), Expect = 3e-54
 Identities = 88/243 (36%), Positives = 123/243 (50%), Gaps = 12/243 (4%)

Query: 95  LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAG 154
           LP + +A  KL RLD+PI   LL  P +  + +AA     P  K++ L      L R AG
Sbjct: 6   LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAAS--GLPSLKLLLLAFLAFFLARSAG 63

Query: 155 CTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGA 214
             +NDL DR+ID +  RT+ RP+ SG ++  + L      LLLGL + L LN  + +L  
Sbjct: 64  YVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSL 123

Query: 215 SSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL- 273
           ++L+L  +YP +KRFTF PQ  LGL F  GAL G AAV GSL L     + ++ + WTL 
Sbjct: 124 AALVLALAYPFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWL-LLLAAILWTLG 182

Query: 274 --------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLLV 325
                   D E D K G+KS  + FG           +   + L L G  A +   + L+
Sbjct: 183 YDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGLLGLIYLL 242

Query: 326 VFC 328
              
Sbjct: 243 GLL 245

Length = 289

>gnl|CDD|171787 PRK12873, ubiA, prenyltransferase; Reviewed

 Score =  114 bits (288), Expect = 9e-30
 Identities = 82/238 (34%), Positives = 120/238 (50%), Gaps = 22/238 (9%)

Query: 100 RAYAKLARLDKPIGTWLLAWPCMWSI--TMAAPRGHFPDFKMMALFGCGALLLRGAGCTV 157
             + +L R +KP G  +L  P  WS+  T +AP    P   ++ L   G L + GAGC  
Sbjct: 8   SPWFELLRWNKPTGRLILLIPAGWSLWLTPSAP----PSLLLLLLIILGGLAVSGAGCIA 63

Query: 158 NDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGAS-- 215
           NDL DR ID  VERT+ RP+A G ++     S L   LLL L ++L L   SR L  S  
Sbjct: 64  NDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA 123

Query: 216 --SLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVF-PMYISGVFWT 272
             +L  +  YP  KR+  +PQA L L + +  L+ WAA +GSL+        +++ + WT
Sbjct: 124 FLALPPILIYPSAKRWFAYPQAILALCWGFAVLIPWAAAEGSLNGGWPLLFCWLATLLWT 183

Query: 273 L---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISS-LALSGYNADIGI 320
                     D+ DD K+G+ S+AL  G ++ + T        S  LAL+ + A +G 
Sbjct: 184 FGFDTVYAMADRRDDAKIGLNSSALSLGSNALK-TVQICYFLTSIFLALAAFIAQVGF 240

Length = 294

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 91.8 bits (228), Expect = 2e-21
 Identities = 63/224 (28%), Positives = 89/224 (39%), Gaps = 12/224 (5%)

Query: 115 WLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRL 174
             LA   + +    A  G   D  ++ L     LLL+ AG  +ND  D +ID        
Sbjct: 1   LPLALLPVLAGLALAAGGVL-DLLLLLLLLLALLLLQAAGNVLNDYFDYEIDADNPNKPD 59

Query: 175 RPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPL---MKRFTF 231
           RP+ SG ++P + L      LLLGL + L L     +LG   LLL   Y     +KR   
Sbjct: 60  RPLPSGRISPREALLLGLALLLLGLLLALLLGPLLLLLGLLGLLLGLLYSPPLRLKRRPL 119

Query: 232 WPQAYLGLTFNWGALLGWAAVKGSLD-----LAVVFPMYISGVFWTL---DKEDDLKVGV 283
             +  +GL F    LLG  AV G +      LA+   +    +  T    D E D K G+
Sbjct: 120 LGELVVGLAFGLLILLGAYAVGGDIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGI 179

Query: 284 KSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLLVVF 327
           ++  +R G           +A    L L        + LLL V 
Sbjct: 180 RTLPVRLGRKRALALYALLLAAALLLLLLLLLLLAPLLLLLAVL 223

Length = 259

>gnl|CDD|233429 TIGR01475, ubiA_other, putative 4-hydroxybenzoate polyprenyltransferase

 Score = 89.3 bits (222), Expect = 2e-20
 Identities = 63/207 (30%), Positives = 88/207 (42%), Gaps = 12/207 (5%)

Query: 132 GHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFL 191
              P  K + L    A+  R A    N ++DR ID    RT+ RP+ SGL++  +  + +
Sbjct: 30  KGLPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMI 89

Query: 192 GFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAA 251
              L L L     LN  + IL    LL++  YP  KRFTF     LG T+    L GW A
Sbjct: 90  ILSLALFLSASYFLNPLAFILSPLVLLVLIIYPYTKRFTFLCHYVLGSTYGLAPLAGWVA 149

Query: 252 VKGSLD-LAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGF 301
           V G++    V + + I   FW           D E D K G+ S   RFG  +       
Sbjct: 150 VIGTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASL 209

Query: 302 G--IACISSLALSGYNADIGIYLLLVV 326
              I  I  L +  Y  +  I LL ++
Sbjct: 210 SHVITFILLLLVGFYVGNGYIALLALI 236

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 282

>gnl|CDD|233428 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase

 Score = 79.2 bits (196), Expect = 7e-17
 Identities = 63/243 (25%), Positives = 100/243 (41%), Gaps = 21/243 (8%)

Query: 100 RAYAKLARLDKPIGTWLLAWPC---MWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCT 156
           + Y +L    KP    LL       MW     AP G   +  ++ L   G  L   +   
Sbjct: 1   KDYLQLT---KPRIISLLLITAFAGMW----LAPGGALVNPPLLLLTLLGTTLAAASANA 53

Query: 157 VNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILL-QLNNFSRILGAS 215
            N  +DRDID  ++RTR RP+ +G ++P + L+F     +LG+ IL   +N  + +LG  
Sbjct: 54  FNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLF 113

Query: 216 SLLL-VFSY-PLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLD-----LAVVFPMYISG 268
            +   V  Y   +KR T       G       L+GWAAV GS+      L  +  ++   
Sbjct: 114 GIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGSISLGAWLLFAIIFLWQPP 173

Query: 269 VFWTLD---KEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLLV 325
            FW L    K+D    G+    +  G+   +       A +  ++L         +L L+
Sbjct: 174 HFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGWLYLI 233

Query: 326 VFC 328
           V  
Sbjct: 234 VAT 236

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 280

>gnl|CDD|223187 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

 Score = 76.5 bits (189), Expect = 7e-16
 Identities = 59/187 (31%), Positives = 85/187 (45%), Gaps = 21/187 (11%)

Query: 99  ARAYAKLARLDKPIGTWLL---AWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGC 155
            + Y +L    KP    LL   A+  M      APRG      ++     GAL   G   
Sbjct: 18  IKDYLQLT---KPRVISLLLITAFAGML----LAPRGSINPLLLLLTLLGGALGA-GGAG 69

Query: 156 TVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNF-SRILGA 214
             N  +DRDID ++ERTR RP+ +GL++P + L+F     + G  +L  L N  + +LG 
Sbjct: 70  AFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGL 129

Query: 215 SSLLL-VFSY-PLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDL------AVVFPMYI 266
             +   V  Y   +KR T       G       L+GWAAV GS+ L      A++F ++ 
Sbjct: 130 FGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMPPLIGWAAVTGSISLGAILLFAIIF-LWT 188

Query: 267 SGVFWTL 273
              FW L
Sbjct: 189 PPHFWAL 195

Length = 304

>gnl|CDD|235293 PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional

 Score = 73.6 bits (182), Expect = 6e-15
 Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 35/162 (21%)

Query: 129 APRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGL 188
           AP G  P   ++      AL+  GA   +N+ +DRDID  +ERT+ RP+ +G ++P + L
Sbjct: 36  APPGVPPLLLLLLTLLGIALVA-GAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREAL 94

Query: 189 SFLGFQLLLGLGILLQLNN-FSRILGASSLLL-VFSYPL-MKRFTFWPQAYLGLTFN--W 243
            F     +LG  +L    N  +  L  + +   V  Y L +KR T  PQ       N   
Sbjct: 95  IFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRT--PQ-------NIVI 145

Query: 244 GA-------LLGWAAVKGSLDL------AVVFPMYISGVFWT 272
           G        L+GWAAV GSL         ++F        WT
Sbjct: 146 GGAAGAMPPLIGWAAVTGSLSWEALILFLIIF-------LWT 180

Length = 296

>gnl|CDD|237283 PRK13106, ubiA, prenyltransferase; Reviewed

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 52/237 (21%), Positives = 90/237 (37%), Gaps = 21/237 (8%)

Query: 100 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVND 159
               +  R+++       + P  +     A +G  P    + L       LR AG T ++
Sbjct: 16  YIILRFLRIEQT----FFSLPMAYLGAFVAIKGI-PPISTLILIFLALFFLRTAGMTNDN 70

Query: 160 LLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLL 219
           L D +ID    RT+ RP+ +G +   +  + +   L+L       +N ++ +L     L+
Sbjct: 71  LADLEIDAKNPRTKNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPIVALI 130

Query: 220 VFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKG----SLD---LAVVFPMYISGVFWT 272
             SYP MKR+T +   +L          G  AV G    SL    L V +   I  + W 
Sbjct: 131 AMSYPYMKRYTAFANYHLASIQGLAVFSGAVAVLGLYANSLIQVLLRVPWLFVIGTILWA 190

Query: 273 L---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGI 320
                     D E D ++G+ S A+  G  +  +     +  +    L      +G 
Sbjct: 191 AGFDLYNHIPDAEFDREMGLHSFAVVLGKWALTFAGLNQLFSVVLDLLGDLYYGLGP 247

Length = 300

>gnl|CDD|184001 PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 26/149 (17%)

Query: 127 MAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQ 186
             A +GH  D  +M     G  L+  +GC +N+ +DRDID  ++RTR R   +G ++  +
Sbjct: 37  FLASKGH-VDPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGE 95

Query: 187 GLSF---LGFQLLLGLGILLQLNNFSRILGASSLLLVFSYP--------LMKRFTFWPQA 235
            L F   LG     G G+L    N       ++L   F Y          +KR +     
Sbjct: 96  ALGFGLALGV---AGFGLLAAFTNP-----LAALFAAFGYVVYVGVYSLYLKRNS--VYG 145

Query: 236 YLGLTFNWGAL---LGWAAVKGSLDLAVV 261
            L  + + GA+   +G+ AV G  D   +
Sbjct: 146 TLVGSLS-GAMPPVVGYCAVTGQFDAGAL 173

Length = 306

>gnl|CDD|237247 PRK12886, ubiA, prenyltransferase; Reviewed

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 56/204 (27%), Positives = 85/204 (41%), Gaps = 14/204 (6%)

Query: 130 PRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLS 189
           P     D+ +MA+ G      R A    N L+D +ID    RT  R + +GL++    + 
Sbjct: 39  PGASQLDWILMAMVGA-----RTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAIL 93

Query: 190 FLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGW 249
           F+    LL L     LN     L   +L  +  Y   KRFT      LG       L  W
Sbjct: 94  FIVLSSLLMLFAAWFLNPLCLYLSPPALFFLLLYSYCKRFTALAHVVLGFCLALAPLGAW 153

Query: 250 AAVKGSLDL-------AVVFPMYISGVFWTL-DKEDDLKVGVKSTALRFGDSSKEWTT-G 300
            A++G+++L       AV+F +    + + L D E D K G+ S   + G +   W    
Sbjct: 154 IAIRGTIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARV 213

Query: 301 FGIACISSLALSGYNADIGIYLLL 324
           F +  I  L   G +A +G + L 
Sbjct: 214 FHLLMIGFLFALGISAGLGPWFLA 237

Length = 291

>gnl|CDD|183814 PRK12888, ubiA, prenyltransferase; Reviewed

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 12/145 (8%)

Query: 157 VNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASS 216
            N ++DR+ID    RT  R + +G ++     +     L + LG    LN     L   +
Sbjct: 58  ANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPLA 117

Query: 217 LLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGS-------LDLAVVFPMYISG- 268
           +  +  YP  KRFT +P A LGL    G +  W AV G+       L LAV    +I G 
Sbjct: 118 VAPLVVYPYAKRFTNFPHAILGLAQAVGPVGAWIAVTGTWSWPAVLLGLAVGL--WIGGF 175

Query: 269 --VFWTLDKEDDLKVGVKSTALRFG 291
             ++   D E D ++GV+S   RFG
Sbjct: 176 DLIYACQDAEVDRRIGVRSVPARFG 200

Length = 284

>gnl|CDD|237239 PRK12869, ubiA, protoheme IX farnesyltransferase; Reviewed

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 59/195 (30%), Positives = 82/195 (42%), Gaps = 18/195 (9%)

Query: 101 AYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDL 160
           AY KL    KP   WLL    +    +AA  G      ++ L   G  L  G     N  
Sbjct: 4   AYLKLL---KPRVIWLLDLAAVAGYFLAAKHGVSW-LPLIPLL-IGGTLASGGSAAFNHG 58

Query: 161 LDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLG--LGILL--QLNNFSRILGASS 216
           ++RDID ++ RT  RP   GL+   + L+       LG  LG LL   L      LG   
Sbjct: 59  IERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFF 118

Query: 217 LLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFP-----MYISGVFW 271
             +V++   +K  T+      G   N  AL G+A+  GSLDL  V       ++  G  W
Sbjct: 119 YAVVYTI-WLKPRTWLNIVIGGFAGNAAALAGYASGTGSLDLEAVLLSFLIYLWTPGHIW 177

Query: 272 TLD---KEDDLKVGV 283
           +L    +ED  + GV
Sbjct: 178 SLALKYREDYRRAGV 192

Length = 279

>gnl|CDD|237244 PRK12876, ubiA, prenyltransferase; Reviewed

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 35/116 (30%), Positives = 49/116 (42%)

Query: 137 FKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLL 196
            K ++L G      R  G  VN ++D  ID    RT  R + + LL+    +  L     
Sbjct: 46  IKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLTLCSF 105

Query: 197 LGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAV 252
           L L +   LN     L   S LL+  YP  KR TF     LGL +    L+ + A+
Sbjct: 106 LFLSLCWLLNPLCFSLAVLSTLLMIIYPYTKRVTFLCHWILGLVYYLAILMNFFAI 161

Length = 300

>gnl|CDD|237242 PRK12874, ubiA, prenyltransferase; Reviewed

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 19/163 (11%)

Query: 148 LLLRGAGCTV---------NDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLG 198
           LL+ G    V         N L+DRDID    RT  RP   G ++    + F+    L+ 
Sbjct: 48  LLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLNALIF 107

Query: 199 LGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDL 258
           +G+   +N  +  L    L+++  Y   KRF+      LGL+     + G  AV G + L
Sbjct: 108 IGVSYFINPLAFKLSFPFLIVLGGYSYFKRFSSLAHLVLGLSLGLAPIAGVVAVLGEIPL 167

Query: 259 AVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGD 292
             VF + +  +FW           D E D K G+ S   +FG+
Sbjct: 168 WSVF-LALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209

Length = 291

>gnl|CDD|215415 PLN02776, PLN02776, prenyltransferase

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 146 GALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGIL-LQ 204
           G +L   +  T+N + +   D+ ++RT  RP+ SG ++    +++       G+ +L  +
Sbjct: 37  GTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGAAGVALLAYK 96

Query: 205 LNNFSRILGASSLLL-VFSYPLMKRFTFWPQAYLGLTFNWGA---LLGWAAVKGSLDLA 259
            N  +  LGA ++LL  F Y  +K+       ++G     GA   L+GWAA  G LD  
Sbjct: 97  TNMLTAGLGAGNILLYAFVYTPLKQIHPA-NTWVGAVV--GAIPPLMGWAAASGQLDAG 152

Length = 341

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 44/244 (18%)

Query: 107 RLDKPIGTWLLAWPCMWSITM-AAPRGHF--------PDFKMMALFGCGALLLRGAGCTV 157
           +L KP+ TW    P +W +   AA  G+F             M + G     L G   T+
Sbjct: 90  QLTKPV-TWP---PLVWGVLCGAAASGNFHWTLEDVAKSIVCMLMSGP---FLTGYTQTI 142

Query: 158 NDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNN---------F 208
           ND  DR+ID + E    RP+ SG ++  + ++ +   LL GLG+   L+          F
Sbjct: 143 NDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVF 200

Query: 209 SRILGASSLLLVFSYPLMK-RFTFWPQAYLGLTFNWGALLGWA--AVKGSLDLAVVF--P 263
              LG S L  ++S P +K +   W   Y  L  ++ +L  WA  A+ G+L   VV    
Sbjct: 201 YLALGGSLLSYIYSAPPLKLKQNGWIGNY-ALGASYISLPWWAGQALFGTLTPDVVVLTL 259

Query: 264 MY-ISGV-------FWTLDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYN 315
           +Y I+G+       F ++  E D  +G++S  + FG  + +W    G   I+ L+++GY 
Sbjct: 260 LYSIAGLGIAIVNDFKSI--EGDRALGLQSLPVAFGVETAKWIC-VGSIDITQLSVAGYL 316

Query: 316 ADIG 319
             IG
Sbjct: 317 LAIG 320

Length = 375

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 67/248 (27%), Positives = 108/248 (43%), Gaps = 36/248 (14%)

Query: 107 RLDKPIGTWLLAWPCMWSITM-AAPRGHF---PD--FKMMALFGCGALLLRGAGCTVNDL 160
           +L KPI TW+   P +W +   AA  G+F    +   K           L G   T+ND 
Sbjct: 21  QLMKPI-TWI---PLIWGVVCGAAASGNFHWSLEDVAKAALCMLLSGPCLTGYTQTINDF 76

Query: 161 LDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQL---------NNFSRI 211
            DRDID + E    RP+ SG ++  + ++ +    + G+ I   L         N F   
Sbjct: 77  YDRDIDAINE--PYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLA 134

Query: 212 LGASSLLLVFSYPLMK-RFTFWPQAYLGLTFNWGALLGWA--AVKGSL--DLAVVFPMY- 265
           L  S +  ++S P +K +   W   +  L  ++ AL  WA  A+ G L  D+AV+  +Y 
Sbjct: 135 LFGSFIAFIYSAPPLKLKQNGWLGNF-ALGASYIALPWWAGHALFGELNPDIAVLTLIYS 193

Query: 266 ISGVFWTL-----DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIG- 319
           I+G+   +       E D  +G++S  + FG  +  W    G   I    ++ Y   IG 
Sbjct: 194 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWIC-VGAIDIFQGLIAAYLLAIGE 252

Query: 320 -IYLLLVV 326
            +Y   +V
Sbjct: 253 NLYAAALV 260

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 53/211 (25%), Positives = 82/211 (38%), Gaps = 23/211 (10%)

Query: 132 GHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFL 191
           G      +  L      L  GAG  +ND  DR+ID  + R   RP+ SG ++P   L+F 
Sbjct: 32  GILSSPSLTGLAFAAVFLATGAGNAINDYFDREIDR-INRPD-RPIPSGAVSPRGALAFS 89

Query: 192 GFQLLLGLGILLQLNNFSRILGA-SSLLLVFSYPLMKRFTFWPQ---AYL-GLTFNWGAL 246
                 G+ +   L      +   +SLLLV     +K          AYL G TF +G  
Sbjct: 90  ILLFAAGVALAFLLPPLCLAIALFNSLLLVLYAETLKGTPGLGNASVAYLTGSTFLFG-- 147

Query: 247 LGWAAVKGSLDLAVVFPMYISGVFWTL------DKED---DLKVGVKSTALRFGDSSKEW 297
               A  G+  L  +  ++      TL      D ED   D   G ++  +  G     +
Sbjct: 148 ---GAAVGTEGLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALY 204

Query: 298 -TTGFGIACISSLALSGYNADIGI-YLLLVV 326
               F +  +++  L    +  G+ YL+LV 
Sbjct: 205 VAAAFLLVAVAASPLPYLLSTFGLWYLVLVA 235

Length = 276

>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 20/45 (44%), Positives = 24/45 (53%)

Query: 157 VNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGI 201
           +NDLLD + D    R R RP ASG L    GL+     LL GL +
Sbjct: 245 LNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLAL 289

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	338
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	100.0
PRK13362	306	protoheme IX farnesyltransferase; Provisional	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PLN02776	341	prenyltransferase	100.0
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK12871	297	ubiA prenyltransferase; Reviewed	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.98
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.98
PLN00012	375	chlorophyll synthetase; Provisional	99.97
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.97
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	99.97
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.97
PRK05951	296	ubiA prenyltransferase; Reviewed	99.97
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.96
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.95
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.94
PRK13595	292	ubiA prenyltransferase; Provisional	99.94
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.94
PRK08238	479	hypothetical protein; Validated	99.93
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.93
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.93
PLN02922	315	prenyltransferase	99.93
PRK13105	282	ubiA prenyltransferase; Reviewed	99.92
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.92
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.92
PRK12875	282	ubiA prenyltransferase; Reviewed	99.92
PRK12872	285	ubiA prenyltransferase; Reviewed	99.91
PLN02878	280	homogentisate phytyltransferase	99.9
PRK13592	299	ubiA prenyltransferase; Provisional	99.9
PRK13591	307	ubiA prenyltransferase; Provisional	99.86
KOG4581	359	consensus Predicted membrane protein [Function unk	99.35
PRK13105	282	ubiA prenyltransferase; Reviewed	92.77
PRK12875	282	ubiA prenyltransferase; Reviewed	91.7
PRK12872	285	ubiA prenyltransferase; Reviewed	91.55
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	90.79
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	89.71
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	89.52
PRK12884	279	ubiA prenyltransferase; Reviewed	89.32
PRK13591	307	ubiA prenyltransferase; Provisional	89.21
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	88.96
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	88.78
PLN02922	315	prenyltransferase	88.46
PRK12871	297	ubiA prenyltransferase; Reviewed	88.31
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	87.96
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	86.33
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	85.98
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	85.04
PLN00012	375	chlorophyll synthetase; Provisional	84.79
PRK12874	291	ubiA prenyltransferase; Reviewed	83.78
PRK05951	296	ubiA prenyltransferase; Reviewed	83.73
PRK12888	284	ubiA prenyltransferase; Reviewed	81.89
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	81.15
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	80.24
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	80.01

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=100.00  E-value=6.6e-49  Score=362.31  Aligned_cols=244  Identities=63%  Similarity=1.073  Sum_probs=230.0

Q ss_pred             cccchhccccHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 019626           87 KSSWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDID  166 (338)
Q Consensus        87 ~~~~~~~~~~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD  166 (338)
                      +++|... .|++|++|+||+|++||+++|+..+|+.|+.++|+..|..++..++.++.+|+++++++||++||+.|+|+|
T Consensus        53 sss~~~~-~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~~~mL~LFG~GAllMRgAGCtINDlwDkdlD  131 (353)
T KOG1381|consen   53 SSSLVAS-SPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIKMLALFGVGALLMRGAGCTINDLWDKDLD  131 (353)
T ss_pred             chhhhhc-CCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccchhHHHHHhcccHHHhccCCceehhhhhhhhh
Confidence            3444442 578899999999999999999999999999999997777778888999999999999999999999999999


Q ss_pred             ccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHH
Q 019626          167 NMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGAL  246 (338)
Q Consensus       167 ~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l  246 (338)
                      ++++|||.|||++|++|++||+.+..++..+|+.+..++||.+..+|..++...+.|+.+||++.|||+++|++++++.+
T Consensus       132 ~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~sl~~v~~ypl~kr~TY~pq~vLgltfnwGAl  211 (353)
T KOG1381|consen  132 AKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGASSLALVITYPLMKRFTYWPQLVLGLTFNWGAL  211 (353)
T ss_pred             hhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhcccccccEEEeehhhhcchhHHHHHhhhcchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 019626          247 LGWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNAD  317 (338)
Q Consensus       247 ~g~~a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~l~~~g~~~~  317 (338)
                      +||.|+.|+.++...+++|+...+|++         |.+||.+.|+|+++.++|++++.|+.++.+..++.+.++|++.+
T Consensus       212 lGw~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~a~~ia~La~aG~~s~  291 (353)
T KOG1381|consen  212 LGWCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFGAAQIASLAAAGIASD  291 (353)
T ss_pred             hcchhhcCccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhhHHHHHHHHHhhhccC
Confidence            999999999988888889999999997         99999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHH
Q 019626          318 IGIYLLLVVFCSSR  331 (338)
Q Consensus       318 lg~~y~~~~~i~~~  331 (338)
                      .+|+||++++..+-
T Consensus       292 q~~pyy~~lg~~~~  305 (353)
T KOG1381|consen  292 QTWPYYAALGAVAA  305 (353)
T ss_pred             CCchHHHHHHHHHH
Confidence            99999998766553

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=1.6e-45  Score=351.63  Aligned_cols=238  Identities=79%  Similarity=1.320  Sum_probs=215.9

Q ss_pred             ccHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCC
Q 019626           95 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRL  174 (338)
Q Consensus        95 ~~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~  174 (338)
                      +|+++++|+||+|++||.++++..+|+.+|..+++..++.+++..+++++++.+++++++|++||++|+|+|++|+||++
T Consensus         2 ~~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~   81 (289)
T PLN02809          2 LPPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTKL   81 (289)
T ss_pred             CchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCC
Confidence            57899999999999999999999999999999986334446777778899999999999999999999999999999999


Q ss_pred             CccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcC
Q 019626          175 RPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKG  254 (338)
Q Consensus       175 RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g  254 (338)
                      ||+|+|++|++||+.+..++.++|+.+++.+|+.++.++..++++.++||++||+++++++++|+++++++++||.+++|
T Consensus        82 RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~lg~~~~~~~l~g~~av~g  161 (289)
T PLN02809         82 RPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGASSLLLVFTYPLMKRFTFWPQAFLGLTFNWGALLGWAAVKG  161 (289)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHhcCcchHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 019626          255 SLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLLV  325 (338)
Q Consensus       255 ~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~l~~~g~~~~lg~~y~~~  325 (338)
                      ++++..++++++..++|+.         |+|||+++|+||+|+++|++++.+++.++.+++.++...++..++|+.|+++
T Consensus       162 ~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~  241 (289)
T PLN02809        162 SLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTGFGAASIGGLALSGYNAGLGWPYYAG  241 (289)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            9887665446777788884         9999999999999999999988888888888888888899999999999986


Q ss_pred             HHHHHHh
Q 019626          326 VFCSSRL  332 (338)
Q Consensus       326 ~~i~~~~  332 (338)
                      ..+.+.+
T Consensus       242 ~~~~~~~  248 (289)
T PLN02809        242 LAAAAGH  248 (289)
T ss_pred             HHHHHHH
Confidence            6655544

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=4.3e-44  Score=345.48  Aligned_cols=250  Identities=46%  Similarity=0.811  Sum_probs=219.9

Q ss_pred             CCCcccccchhccccHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCC---CCCcHHHHHHHHHHHHHHHHHHHHhh
Q 019626           82 SSSNEKSSWIDLYLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRG---HFPDFKMMALFGCGALLLRGAGCTVN  158 (338)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g---~~~~l~~~ll~~l~~~l~~~a~~~lN  158 (338)
                      ..+.+.++|+...+|+++++|+||+|++||++.++.++|+++|.++|...+   +..++..+++++++++++++++|++|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~N   92 (314)
T PRK12878         13 VADAPSGNWVDRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVGAIAMRGAGCTYN   92 (314)
T ss_pred             ccccccccchhhhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444456655578999999999999999999999999999999986431   13566677889999999999999999


Q ss_pred             hcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHH
Q 019626          159 DLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLG  238 (338)
Q Consensus       159 D~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~g  238 (338)
                      ||+|+|+|++|+||++||+++|++|++||+.++.++.++|+.+++..|+.++.+++.+++..+.||++||++++++.++|
T Consensus        93 d~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~~G  172 (314)
T PRK12878         93 DIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIASLAIVAAYPFMKRITWWPQFFLG  172 (314)
T ss_pred             HHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence            99999999999999999999999999999999999999999999889999999999999889999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHHH
Q 019626          239 LTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSL  309 (338)
Q Consensus       239 l~~al~~l~g~~a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~l  309 (338)
                      +++++++++||++++|++++..++ +++..++|+.         |+|||+++|+||+|+++|++++.+++.++++..+++
T Consensus       173 l~~~~~~l~g~~a~~g~~~~~~~~-l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~  251 (314)
T PRK12878        173 LAFSWGALMGWAAHFGSLSLAAVL-LYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLM  251 (314)
T ss_pred             HHHHHHHHHHHHHHhCCCchHHHH-HHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHH
Confidence            999999999999999999987765 7777888875         999999999999999999999998887777777777


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHh
Q 019626          310 ALSGYNADIGIYLLLVVFCSSRL  332 (338)
Q Consensus       310 ~~~g~~~~lg~~y~~~~~i~~~~  332 (338)
                      .+.+...++|+.|+++++..++.
T Consensus       252 ~l~~~~~~~~~~~~~~~~~~~~~  274 (314)
T PRK12878        252 GLAFWLAGVPLLALLGLLAAAAH  274 (314)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHH
Confidence            77777777899998776665554

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.7e-44  Score=341.46  Aligned_cols=236  Identities=32%  Similarity=0.513  Sum_probs=211.9

Q ss_pred             cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCC
Q 019626           96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLR  175 (338)
Q Consensus        96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~R  175 (338)
                      |+++++|+||+|++||.++++.++|+++|..++.. + .+++...+++++|.+++++++|++||+.|+|+|++|+||++|
T Consensus         4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~-~-~~~~~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R   81 (294)
T PRK12873          4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPS-A-PPSLLLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNR   81 (294)
T ss_pred             hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCC
Confidence            67899999999999999999999999999887642 2 356767888999999999999999999999999999999999


Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHH
Q 019626          176 PVASGLLTPFQGLSFLGFQLLLGLGILLQL----NNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAA  251 (338)
Q Consensus       176 PI~sG~IS~~~A~~~~~~l~~lgl~l~~~l----~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a  251 (338)
                      |+|+|++|++||+.++.++.++++.+++.+    |+.++.++.+++++..+||++||++.++|+++|+++++++++||.|
T Consensus        82 Pl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~~~KR~t~~~~~vlg~~~a~~~l~gw~A  161 (294)
T PRK12873         82 PLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYPSAKRWFAYPQAILALCWGFAVLIPWAA  161 (294)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhHHHHHHHH
Confidence            999999999999999999999999888765    6788888888888899999999999999999999999999999999


Q ss_pred             hcCCCCHHHH-HHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 019626          252 VKGSLDLAVV-FPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIY  321 (338)
Q Consensus       252 ~~g~~~~~~l-l~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~l~~~g~~~~lg~~  321 (338)
                      ++|++++... +.+++..++|+.         |+|||+++|+||+|+++|+++..+...+++++++++...|+..++|+.
T Consensus       162 v~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~~~~~~~~~~~~~ll~~~g~~~~l~~~  241 (294)
T PRK12873        162 AEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALKTVQICYFLTSIFLALAAFIAQVGFI  241 (294)
T ss_pred             HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence            9999986433 235678889986         999999999999999999877777778999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 019626          322 LLLVVFCSSRLL  333 (338)
Q Consensus       322 y~~~~~i~~~~~  333 (338)
                      ||+++.+.+.++
T Consensus       242 y~~~~~~~~~~l  253 (294)
T PRK12873        242 FWPFWLIASIGM  253 (294)
T ss_pred             HHHHHHHHHHHH
Confidence            998877766544

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=4.7e-44  Score=341.82  Aligned_cols=237  Identities=37%  Similarity=0.587  Sum_probs=215.6

Q ss_pred             cccHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCC
Q 019626           94 YLPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTR  173 (338)
Q Consensus        94 ~~~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~  173 (338)
                      ..|+++++|+|++|++||.+.++.++|+++|..+|.. + .+++..+++++++.+++++++|++|||+|+|+|++|+||+
T Consensus         4 ~~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~-~-~~~~~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~   81 (290)
T PRK12870          4 TLEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAH-G-LPPLPLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTR   81 (290)
T ss_pred             CcchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCccc
Confidence            3568999999999999999999999999999999863 3 4677778888999999999999999999999999999999


Q ss_pred             CCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhc
Q 019626          174 LRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVK  253 (338)
Q Consensus       174 ~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~  253 (338)
                      +||+|+|++|++||..++.++.++|+.+++++|+.++.+++.++++.++||++||++.++|+++|+++++++++||.+++
T Consensus        82 ~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~lg~~~~~~~l~g~~a~~  161 (290)
T PRK12870         82 FRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVAAVPVIFLYPLAKRVFPVPQLVLAIAWGFAVLISWSAVT  161 (290)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhccccceeeehHHHHhHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999988889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 019626          254 GSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLL  324 (338)
Q Consensus       254 g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~l~~~g~~~~lg~~y~~  324 (338)
                      |++++..++ +++..++|+.         |+|||+++|+||+|+++|++++.+++.++.++..++...++..++|++|++
T Consensus       162 g~~~~~~~~-l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~  240 (290)
T PRK12870        162 GHLDLGTWL-LWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILGVLLELHLPFWI  240 (290)
T ss_pred             CCCCHHHHH-HHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            999987776 7778888875         999999999999999999999999888777778778888888899999998


Q ss_pred             HHHHHHHhh
Q 019626          325 VVFCSSRLL  333 (338)
Q Consensus       325 ~~~i~~~~~  333 (338)
                      ++++.+.++
T Consensus       241 ~~~~~~~~l  249 (290)
T PRK12870        241 GLAIAAVLW  249 (290)
T ss_pred             HHHHHHHHH
Confidence            776665554

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=1e-42  Score=331.22  Aligned_cols=236  Identities=39%  Similarity=0.729  Sum_probs=211.0

Q ss_pred             cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCC
Q 019626           96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLR  175 (338)
Q Consensus        96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~R  175 (338)
                      |+++++|+||+|++||.+..+.++|+++|..+|.. + .+++..+++++++.+++++++|++|||+|+|+|++|+||++|
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~-~-~~~~~~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~R   79 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAAD-G-IPDLWVLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNR   79 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCC
Confidence            67899999999999999999999999999999863 3 356666777889999999999999999999999999999999


Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcCC
Q 019626          176 PVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGS  255 (338)
Q Consensus       176 PI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~  255 (338)
                      |+|+|++|++||+.++.++.++|+++++.+|+.++.+++.+++..++|+++||++.++++++|+++++++++||.+++|+
T Consensus        80 Pl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~g~~~~~g~~a~~~~  159 (282)
T PRK12848         80 PLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVAALALAWIYPFMKRYTHLPQVVLGAAFGWGIPMAFAAVQGS  159 (282)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHhcCcccHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999888888999998999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 019626          256 LDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLLVV  326 (338)
Q Consensus       256 ~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~l~~~g~~~~lg~~y~~~~  326 (338)
                      ++...++ +++..++|+.         |+|||+++|+||+|+++|+|++.++..++.+...++.+.++..++|+.|++++
T Consensus       160 ~~~~~~~-l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~  238 (282)
T PRK12848        160 VPLEAWL-LFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLGLGWAYYWGL  238 (282)
T ss_pred             CcHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            9888776 7778888875         99999999999999999999988887766666666666677778899999887


Q ss_pred             HHHHHhhh
Q 019626          327 FCSSRLLS  334 (338)
Q Consensus       327 ~i~~~~~~  334 (338)
                      ++.++.+.
T Consensus       239 ~~~~~~~~  246 (282)
T PRK12848        239 LVAAALFV  246 (282)
T ss_pred             HHHHHHHH
Confidence            77766553

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=1.1e-42  Score=330.94  Aligned_cols=234  Identities=53%  Similarity=0.945  Sum_probs=208.7

Q ss_pred             HHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccc
Q 019626           99 ARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVA  178 (338)
Q Consensus        99 l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~  178 (338)
                      |++|.||+|++||.++++..+|+++|..+|...++.+++...++.+++++++++++|++|||+|+|+|++|+||++||+|
T Consensus         1 ~~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~   80 (281)
T TIGR01474         1 LLPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLA   80 (281)
T ss_pred             ChHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCC
Confidence            47899999999999999999999999999864333456666777888999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcCCCCH
Q 019626          179 SGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDL  258 (338)
Q Consensus       179 sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~~~  258 (338)
                      +|++|++||+.++.++.++|+.+++.+|+.+..+++.+++..+.||++||+++++++++|+++++++++||.+++|++++
T Consensus        81 sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~~  160 (281)
T TIGR01474        81 SGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVASLALVATYPFMKRITYWPQLVLGLAFGWGALMGWAAVTGDLST  160 (281)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhchhcccccccHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence            99999999999999999999999999999999999999989999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 019626          259 AVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLLVVFCS  329 (338)
Q Consensus       259 ~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~l~~~g~~~~lg~~y~~~~~i~  329 (338)
                      ..++ +++..++|+.         |+|||+++|+||+|+++|++++.+...++++...++.+.+...+.|+.|++++++.
T Consensus       161 ~~~l-l~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~  239 (281)
T TIGR01474       161 AAWV-LYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGLGPVYYLGLAAA  239 (281)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            7765 6677778874         99999999999999999999887777777777777778888888899999876655


Q ss_pred             HHhh
Q 019626          330 SRLL  333 (338)
Q Consensus       330 ~~~~  333 (338)
                      +.++
T Consensus       240 ~~~~  243 (281)
T TIGR01474       240 ALLL  243 (281)
T ss_pred             HHHH
Confidence            5443

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=5.9e-42  Score=326.33  Aligned_cols=230  Identities=41%  Similarity=0.744  Sum_probs=203.5

Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCc
Q 019626           97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRP  176 (338)
Q Consensus        97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RP  176 (338)
                      +++++|+|++|++||.+.++..+|+++|.++|.. +..+++..+++++++++++++++|++|||+|+|+|++|+||++||
T Consensus         5 ~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~-~~~~~~~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rp   83 (285)
T PRK12847          5 MKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASH-SLLPDISLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRP   83 (285)
T ss_pred             HHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhC-ccCCcHHHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCC
Confidence            4799999999999999999999999999999864 222577778889999999999999999999999999999999999


Q ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcCCC
Q 019626          177 VASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSL  256 (338)
Q Consensus       177 I~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~  256 (338)
                      +++|++|++||+.++.++.++|+.+++++|+.++.+++++++.+++||+.||+++++++++|+++++++++||.+++|++
T Consensus        84 l~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~~~~~l~~~~a~~g~~  163 (285)
T PRK12847         84 LASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFIAVILIVLYPLMKRFFYWPQLFLGFTFNMGILMAFAAVQNQL  163 (285)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999889999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 019626          257 DLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIYLLLVVF  327 (338)
Q Consensus       257 ~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~l~~~g~~~~lg~~y~~~~~  327 (338)
                      ++..++ +++..++|+.         |+|||+++|+||+|+++|+|++.++..+..+...++.+.++..+.+..||.++.
T Consensus       164 ~~~~~~-l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~  242 (285)
T PRK12847        164 DIEAIL-LYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFYLAIL  242 (285)
T ss_pred             cHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            988776 7777788875         999999999999999999999988876555555556666666667666665444


Q ss_pred             H
Q 019626          328 C  328 (338)
Q Consensus       328 i  328 (338)
                      +
T Consensus       243 ~  243 (285)
T PRK12847        243 A  243 (285)
T ss_pred             H
Confidence            3

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.6e-40  Score=317.70  Aligned_cols=232  Identities=24%  Similarity=0.373  Sum_probs=202.5

Q ss_pred             cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCC
Q 019626           96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLR  175 (338)
Q Consensus        96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~R  175 (338)
                      .+++++|+||+|++++.   +...++++|..+|.. + .+++..+++++++.+++++++|++|||+|+|+|++|+||++|
T Consensus         5 ~~~~~~y~~L~r~~~~~---~~~~~~~~g~~lA~~-~-~~~~~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R   79 (291)
T PRK12886          5 LTKLKVFLEMIKFSHTL---FALPFAGIGAVLAAL-G-LPGASQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGR   79 (291)
T ss_pred             HHHHHHHHHHhCccchH---HHHHHHHHHHHHhcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCC
Confidence            47899999999998884   445567788888752 3 356767888899999999999999999999999999999999


Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcCC
Q 019626          176 PVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGS  255 (338)
Q Consensus       176 PI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~  255 (338)
                      |+++|++|++||+.+...+.+.++.+++.+|+.+..+++++++....||++||++.++++++|+++++++++||.+++|+
T Consensus        80 PL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~Y~~~Kr~t~~~~~~~g~~~~~~~l~g~~a~~g~  159 (291)
T PRK12886         80 AIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPPALFFLLLYSYCKRFTALAHVVLGFCLALAPLGAWIAIRGT  159 (291)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999977777777777778999999888888888999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHH
Q 019626          256 LDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGIYLLLV  325 (338)
Q Consensus       256 ~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~~y~~~  325 (338)
                      +++..++ +++..++|+.         |+|||+++|+||+|+++|++++.++. .+.++++++++++++..+.|+.|+++
T Consensus       160 ~~~~~~l-l~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~  238 (291)
T PRK12886        160 IELPAIL-LGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGPWFLAG  238 (291)
T ss_pred             CcHHHHH-HHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            9888776 6777788874         99999999999999999999988876 67788888899999989999999987


Q ss_pred             HHHHHHhh
Q 019626          326 VFCSSRLL  333 (338)
Q Consensus       326 ~~i~~~~~  333 (338)
                      +.+.+.++
T Consensus       239 ~~~~~~~~  246 (291)
T PRK12886        239 LAVTGILL  246 (291)
T ss_pred             HHHHHHHH
Confidence            76666554

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.1e-40  Score=317.62  Aligned_cols=230  Identities=23%  Similarity=0.364  Sum_probs=200.7

Q ss_pred             HHHHHHHHHccccchHHHHHHHHHHHHHHhhcC---CCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCC
Q 019626           98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAP---RGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRL  174 (338)
Q Consensus        98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~---~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~  174 (338)
                      ++++|+|++|++|.    +...|.....++++.   .+ .+++..+++.+++.+++++++|++|||+|+|+|++|+||++
T Consensus         1 ~~~~~~~l~r~~~~----~~a~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~   75 (284)
T PRK12888          1 RVRAFLRLVAIEHS----VFALPFAYIAALTAMFASDG-SVHWADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAG   75 (284)
T ss_pred             CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCC
Confidence            37899999999987    455566544444331   23 45777788899999999999999999999999999999999


Q ss_pred             CccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcC
Q 019626          175 RPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKG  254 (338)
Q Consensus       175 RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g  254 (338)
                      ||+|+|++|++||+.++.++.++++.++..+|+.++.++.++++..+.|+++||+++++|+++|+++++++++||.+++|
T Consensus        76 RPL~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~~~~~~~~Y~~~Kr~t~~~~~~lg~~~~~~~l~g~~a~~g  155 (284)
T PRK12888         76 RELVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPLAVAPLVVYPYAKRFTNFPHAILGLAQAVGPVGAWIAVTG  155 (284)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999998888888888899999888888888889999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHH
Q 019626          255 SLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGIYLLL  324 (338)
Q Consensus       255 ~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~~y~~  324 (338)
                      ++++..++ +++..++|+.         |+|||+++|+||+|+++|+|++.+++ .++++++++++++++..++|+.|++
T Consensus       156 ~~~~~~~l-l~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~~  234 (284)
T PRK12888        156 TWSWPAVL-LGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWWI  234 (284)
T ss_pred             CCCHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            99987776 7778888875         99999999999999999999988765 6788888888999999999999998


Q ss_pred             HHHHHHHhh
Q 019626          325 VVFCSSRLL  333 (338)
Q Consensus       325 ~~~i~~~~~  333 (338)
                      ++++.+.++
T Consensus       235 ~~~~~~~~l  243 (284)
T PRK12888        235 GLAITAGAF  243 (284)
T ss_pred             HHHHHHHHH
Confidence            776665543

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.4e-40  Score=318.92  Aligned_cols=232  Identities=20%  Similarity=0.255  Sum_probs=199.7

Q ss_pred             ccHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCC
Q 019626           95 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRL  174 (338)
Q Consensus        95 ~~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~  174 (338)
                      ..+++++|+||+|++|+.+.   ..++++|..+|.. + .+++..+++++++.+++++++|++|||+|+|+|++|+||++
T Consensus        11 ~~~~l~~yl~L~R~~~~~~~---l~~~~~g~~la~~-~-~~~~~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~   85 (300)
T PRK13106         11 TRSKFYIILRFLRIEQTFFS---LPMAYLGAFVAIK-G-IPPISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKN   85 (300)
T ss_pred             hHHHHHHHHHHHccccHHHH---HHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCC
Confidence            35789999999999999644   4568888888753 3 46777788899999999999999999999999999999999


Q ss_pred             CccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcC
Q 019626          175 RPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKG  254 (338)
Q Consensus       175 RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g  254 (338)
                      ||+|+|++|++||+.+..++.+.++++++++|+.+..++..+++..+.||++||+++++|+++|+++++++++||.+++|
T Consensus        86 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~lg~~~~~~~~~G~~a~~g  165 (300)
T PRK13106         86 RPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPIVALIAMSYPYMKRYTAFANYHLASIQGLAVFSGAVAVLG  165 (300)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhcCCcchHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999998888888888888899999888888887888999999999999999999999999999999887


Q ss_pred             CCC--------HHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHh
Q 019626          255 SLD--------LAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNA  316 (338)
Q Consensus       255 ~~~--------~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~  316 (338)
                      ...        ...++ +++..++|+.         |+|+|++.|+||+|+++| +++..++ .+++++++++.++++..
T Consensus       166 ~~~~~~~~~l~~~~~~-l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~  243 (300)
T PRK13106        166 LYANSLIQVLLRVPWL-FVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYY  243 (300)
T ss_pred             CcccchhhhhhHHHHH-HHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            542        22232 5667788885         999999999999999999 6666554 69999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhh
Q 019626          317 DIGIYLLLVVFCSSRLL  333 (338)
Q Consensus       317 ~lg~~y~~~~~i~~~~~  333 (338)
                      ++|+.|++++.+.+.++
T Consensus       244 ~lg~~y~~~~~~~~~~l  260 (300)
T PRK13106        244 GLGPIAIAATILHGLIM  260 (300)
T ss_pred             CCcHHHHHHHHHHHHHH
Confidence            99999998877766554

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.1e-40  Score=317.70  Aligned_cols=229  Identities=20%  Similarity=0.267  Sum_probs=196.3

Q ss_pred             HHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCcc
Q 019626           98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPV  177 (338)
Q Consensus        98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI  177 (338)
                      ++|.|+|++|+++.   .+.+.-.++|..+|.. + .+++..+++.+++.+++++++|++||++|+|+|++|+||++||+
T Consensus         2 ~~~~~~el~k~~~t---~~al~~a~~g~~lA~~-~-~~~~~~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL   76 (286)
T PRK12895          2 NFRDIVDYIKLEHT---VFDLPFILAGYVIAAG-H-YIHPIKILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL   76 (286)
T ss_pred             cHHHHHHHHhHHHH---HHHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence            57899999877765   2333344567777642 2 34555566778889999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcCCCC
Q 019626          178 ASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLD  257 (338)
Q Consensus       178 ~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~~  257 (338)
                      |+|++|++||+.+..++.++|+.+++++|+.++.++...+.+...|+++||+++++|+++|++.++++++||.+++|+++
T Consensus        77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~~~l~~~yp~~KR~t~~~~~~lG~~~g~~~l~g~~Av~g~~~  156 (286)
T PRK12895         77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPIVIFLFIIDPFLKRYTAWRHIYMGSIIGLGVLAGYLAVIPAFP  156 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHhHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999888888877788888899999999999999999999999999999887


Q ss_pred             HH--HHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHH
Q 019626          258 LA--VVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGIYLLLV  325 (338)
Q Consensus       258 ~~--~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~~y~~~  325 (338)
                      +.  .++ +++..++|+.         |+|||++.|+||+|+++|++++.+++ .+++++++++.++|+... |+.|+++
T Consensus       157 ~~~~~~~-l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~-~~~y~~~  234 (286)
T PRK12895        157 YNLLIYI-IFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR-TLWYLAA  234 (286)
T ss_pred             chHHHHH-HHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHH
Confidence            43  233 7888999986         99999999999999999999998776 688999999999998776 8999988


Q ss_pred             HHHHHHhh
Q 019626          326 VFCSSRLL  333 (338)
Q Consensus       326 ~~i~~~~~  333 (338)
                      +.+.+.++
T Consensus       235 ~~~~~~~l  242 (286)
T PRK12895        235 LIIIYTLV  242 (286)
T ss_pred             HHHHHHHH
Confidence            87766554

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.1e-39  Score=311.85  Aligned_cols=234  Identities=25%  Similarity=0.382  Sum_probs=198.1

Q ss_pred             ccHHHHHHHHHHccccchHHHHHHHHHHHHHHhhc----CCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC
Q 019626           95 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAA----PRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVE  170 (338)
Q Consensus        95 ~~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~----~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~  170 (338)
                      ..+++|+|+|++|++++......   .++|..+|.    ..+ .+++..+++++++++++++++|++|||+|+|+|++|+
T Consensus         4 ~~~~l~~y~~l~r~~~~~~~l~~---a~~g~~la~~~~~~~~-~~~~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~   79 (291)
T PRK12874          4 FTKKLKDISELVVFKHSIFSLPF---IFIAMIVASKQKNDTG-WFGFKLLILGILAAVSARNFAMAFNRLVDRDIDKDNP   79 (291)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHH---HHHHHHHHhhhhccCC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Confidence            45789999999999998544332   344444443    123 3577788889999999999999999999999999999


Q ss_pred             CCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHH
Q 019626          171 RTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWA  250 (338)
Q Consensus       171 rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~  250 (338)
                      ||++||+|+|++|++||+.++.++.++++.+++++|+.+..+++..+++...||++||+++++|+++|+++++++++||.
T Consensus        80 RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~~g~~~~~~~l~G~~  159 (291)
T PRK12874         80 RTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFPFLIVLGGYSYFKRFSSLAHLVLGLSLGLAPIAGVV  159 (291)
T ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888889999888887777889999999999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhH
Q 019626          251 AVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGI  320 (338)
Q Consensus       251 a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~  320 (338)
                      +++|+++...++ +++..++|+.         |+|+|+++|+||+|+++|++++.++. .+++..+.++...++..+.++
T Consensus       160 av~g~~~~~~~~-l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (291)
T PRK12874        160 AVLGEIPLWSVF-LALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGL  238 (291)
T ss_pred             HHcCCCcHHHHH-HHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            999999877665 6777788886         99999999999999999999887764 566667777777777777777


Q ss_pred             HHHHHHHHHHHhh
Q 019626          321 YLLLVVFCSSRLL  333 (338)
Q Consensus       321 ~y~~~~~i~~~~~  333 (338)
                      .|++++.+++..+
T Consensus       239 ~~~~~~~~~~~~l  251 (291)
T PRK12874        239 FAYLGVIVSALIL  251 (291)
T ss_pred             HHHHHHHHHHHHH
Confidence            8887777666554

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=3.2e-39  Score=307.02  Aligned_cols=230  Identities=29%  Similarity=0.391  Sum_probs=197.8

Q ss_pred             HHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCcc
Q 019626           98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPV  177 (338)
Q Consensus        98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI  177 (338)
                      ++|+|+||+|++++...   ...+.+|..+|.. + .+++..+++++++++++++++|++|||+|+|+|++|+||++||+
T Consensus         1 ~~~~~~~L~r~~~~~~~---~~~~~~g~~la~~-~-~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl   75 (282)
T TIGR01475         1 KFKDILELIKFEHTVFA---LPFAYAGALLAAK-G-LPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL   75 (282)
T ss_pred             CHHHHHHHHccccHHHH---HHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence            47899999999888432   2234457777643 3 45777788899999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcCCCC
Q 019626          178 ASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLD  257 (338)
Q Consensus       178 ~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~~  257 (338)
                      ++|++|+++|+.++.++.++++.++..+|+.+..++..+.+..+.|+++||+++++++++|+++++++++||.+++|+++
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~  155 (282)
T TIGR01475        76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILSPLVLLVLIIYPYTKRFTFLCHYVLGSTYGLAPLAGWVAVIGTIS  155 (282)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHhccccccHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            99999999999999998888888888899999888888888899999999999999999999999999999999999888


Q ss_pred             --HHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHH
Q 019626          258 --LAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGIYLLLV  325 (338)
Q Consensus       258 --~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~~y~~~  325 (338)
                        ...++ +++..++|+.         |+|+|+++|+||+|+++|+|++.++. .+..++++++.+++...+.|+.|+++
T Consensus       156 ~~~~~~l-l~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~~  234 (282)
T TIGR01475       156 FFLVAWL-LGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYIALLA  234 (282)
T ss_pred             chHHHHH-HHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHH
Confidence              65555 6677777775         99999999999999999988877665 56778888888899989899999987


Q ss_pred             HHHHHHhh
Q 019626          326 VFCSSRLL  333 (338)
Q Consensus       326 ~~i~~~~~  333 (338)
                      +.+.+.++
T Consensus       235 ~~~~~~~l  242 (282)
T TIGR01475       235 LILIGLIL  242 (282)
T ss_pred             HHHHHHHH
Confidence            77766443

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4e-39  Score=307.85  Aligned_cols=227  Identities=25%  Similarity=0.256  Sum_probs=192.5

Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHH-HHHhhcC----CCC---CCcHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q 019626           97 RQARAYAKLARLDKPIGTWLLAWPCMW-SITMAAP----RGH---FPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNM  168 (338)
Q Consensus        97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~-g~~lA~~----~g~---~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~  168 (338)
                      +++|.|.|++|++|.    ++.+|... |+.+|+.    .++   .|+|..++++.++.+++++++|++||++|+|+|++
T Consensus         2 ~~~~~~~~~i~~~ht----~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~   77 (300)
T PRK12876          2 MRIKYFQQLINCKYA----LFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKK   77 (300)
T ss_pred             chHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCC
Confidence            468999999999998    78889875 4455541    134   57888889999999999999999999999999999


Q ss_pred             CCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHH
Q 019626          169 VERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLG  248 (338)
Q Consensus       169 ~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g  248 (338)
                      |+||++||+|+|++|++||+.++..+.++++++++++|+.++.++.++++..++||++||+++++|+++|+++++++++|
T Consensus        78 ~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~~~~~~iY~~~KR~t~~~~~vLGl~~~~~~l~~  157 (300)
T PRK12876         78 NPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVLSTLLMIIYPYTKRVTFLCHWILGLVYYLAILMN  157 (300)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhcCCchhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888888889999999999999998889999999999999999999999999999


Q ss_pred             HHHhcCC-CCHHHHH---HHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHH-HHHHHHHHHHHHHHHH
Q 019626          249 WAAVKGS-LDLAVVF---PMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWT-TGFGIACISSLALSGY  314 (338)
Q Consensus       249 ~~a~~g~-~~~~~ll---~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l-~~~~~~~i~~l~~~g~  314 (338)
                      |.+++++ +++....   ...+..++|..         |+|+|++.|+||+|+++|++++..+ ..++++.++++.+.++
T Consensus       158 ~~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~  237 (300)
T PRK12876        158 FFAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGY  237 (300)
T ss_pred             HHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            9998877 5542211   12233444543         9999999999999999999998655 4688888998999999


Q ss_pred             HhhhhHHHHH-HHH
Q 019626          315 NADIGIYLLL-VVF  327 (338)
Q Consensus       315 ~~~lg~~y~~-~~~  327 (338)
                      ..++|++||+ +++
T Consensus       238 ~~~l~~~~y~~~~~  251 (300)
T PRK12876        238 FVSNKKIFYLCSLV  251 (300)
T ss_pred             HhhccHHHHHHHHH
Confidence            9999988554 444

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=1.9e-38  Score=302.73  Aligned_cols=236  Identities=39%  Similarity=0.569  Sum_probs=209.8

Q ss_pred             ccHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCC
Q 019626           95 LPRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRL  174 (338)
Q Consensus        95 ~~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~  174 (338)
                      .+++++.|.+++|++||+++.+..+|+++|..++.  .+.+++...++++++.+++++++|++||++|+|+|++|+||++
T Consensus         6 ~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~   83 (289)
T COG0382           6 LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAA--SGLPSLKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKN   83 (289)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccC
Confidence            46789999999999999999999999999999986  2344567788899999999999999999999999999999999


Q ss_pred             CccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcC
Q 019626          175 RPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKG  254 (338)
Q Consensus       175 RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g  254 (338)
                      ||+|+|++|+++|+.+..++.++++.+++++|+.++.++..++++.+.|+.+||.+.+++..+|.++++++++|+.++.|
T Consensus        84 RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~l~~~Y~~~Kr~~~~~~~~lg~~~~~~~~~g~~a~~~  163 (289)
T COG0382          84 RPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAYPFLKRFTFLPQLVLGLAFGLGALAGAAAVGG  163 (289)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999997799999999999999999999999999998


Q ss_pred             CCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHH
Q 019626          255 SLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGI-YLLL  324 (338)
Q Consensus       255 ~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~l~~~g~~~~lg~-~y~~  324 (338)
                      +.+...++ +++..++|+.         |+|+|++.|+||+|+.+|++++.+++.+..+..+.+...++..+.+. .|++
T Consensus       164 ~~~~~~~~-l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (289)
T COG0382         164 SLPLLAWL-LLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGLLGLIYLL  242 (289)
T ss_pred             ccchHHHH-HHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence            87777776 7778888876         99999999999999999999999998644455555666666666664 8888


Q ss_pred             HHHHHHHhh
Q 019626          325 VVFCSSRLL  333 (338)
Q Consensus       325 ~~~i~~~~~  333 (338)
                      ++.+.+.++
T Consensus       243 ~~~~~~~~~  251 (289)
T COG0382         243 GLLVAALLL  251 (289)
T ss_pred             HHHHHHHHH
Confidence            777766554

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=5.9e-38  Score=298.21  Aligned_cols=227  Identities=26%  Similarity=0.330  Sum_probs=191.8

Q ss_pred             HHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCcc
Q 019626           98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPV  177 (338)
Q Consensus        98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI  177 (338)
                      |+|+|+|++   ||...++..+|+++|.+++..  +.+++..+++.+++.++.++++|++|||+|+|+|++|+||++||+
T Consensus         1 ~~~~~~~l~---rp~~~~~~~~~~~~g~~la~~--~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   75 (279)
T PRK12869          1 KIKAYLKLL---KPRVIWLLDLAAVAGYFLAAK--HGVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT   75 (279)
T ss_pred             CHHHHHHHh---HHHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence            478999986   677788999999999999842  235676777888999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHH-HHHHHHHHHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHhcC
Q 019626          178 ASGLLTPFQGLSFLGFQLLLGLGILLQ-LNNFSRI-LGASSLLLVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAVKG  254 (338)
Q Consensus       178 ~sG~IS~~~A~~~~~~l~~lgl~l~~~-l~~~~~~-l~~~~l~~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~~g  254 (338)
                      |+|++|++||..++.++.++|+.++++ +|+.+.. +++...++.+.||. +||+++++++++|+++++++++||++++|
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g  155 (279)
T PRK12869         76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTIWLKPRTWLNIVIGGFAGNAAALAGYASGTG  155 (279)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999887 8887654 34445578899997 99999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHH------HHHHh---cHHHHHhcCCceeeEeeCcchHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHH
Q 019626          255 SLDLAVVFPMYISG------VFWTL---DKEDDLKVGVKSTALRFGDSSKEWT-TGFGIACISSLALSGYNADIGIYLLL  324 (338)
Q Consensus       255 ~~~~~~ll~l~~~~------~~w~~---D~e~D~~~G~kTlav~~G~k~a~~l-~~~~~~~i~~l~~~g~~~~lg~~y~~  324 (338)
                      ++++..++ +++..      ++|+.   |+|||+++|+||+|+++|+|++.++ ..++++.+++++.++. .+.|+.|++
T Consensus       156 ~~~~~~~l-l~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~g~~y~~  233 (279)
T PRK12869        156 SLDLEAVL-LSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYIGLIGLI  233 (279)
T ss_pred             CCCHHHHH-HHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHH
Confidence            99887665 44444      44443   9999999999999999999987765 4577777777777777 788999998


Q ss_pred             HHHHHHH
Q 019626          325 VVFCSSR  331 (338)
Q Consensus       325 ~~~i~~~  331 (338)
                      ++.+.+.
T Consensus       234 ~~~~~~~  240 (279)
T PRK12869        234 LVAILSA  240 (279)
T ss_pred             HHHHHHH
Confidence            7765443

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=1.7e-37  Score=297.43  Aligned_cols=225  Identities=27%  Similarity=0.388  Sum_probs=193.0

Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCc
Q 019626           97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRP  176 (338)
Q Consensus        97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RP  176 (338)
                      +++++|+|++   ||..+.+..+|+++|.++|.. + .+++..+++++++++++++++|++|||+|+|+|++|+||++||
T Consensus         8 ~~~~~y~~L~---rp~~~~~~~~~~~~G~~la~~-~-~~~~~~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rp   82 (296)
T PRK04375          8 ATLKDYLALT---KPRVISLNLFTALGGMLLAPP-G-VPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRP   82 (296)
T ss_pred             hhHHHHHHHh---HHHHHHHHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCC
Confidence            5799999986   677788999999999999853 3 3577778889999999999999999999999999999999999


Q ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH-HHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHhc
Q 019626          177 VASGLLTPFQGLSFLGFQLLLGLGILLQ-LNNFSRILGASSLL-LVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAVK  253 (338)
Q Consensus       177 I~sG~IS~~~A~~~~~~l~~lgl~l~~~-l~~~~~~l~~~~l~-~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~~  253 (338)
                      +|+|++|++||+.++.++.++|+.++++ .|+.+..++.++++ +.++||+ +||++.+++.++|+++++++++||.+++
T Consensus        83 l~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~  162 (296)
T PRK04375         83 LVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGAMPPLIGWAAVT  162 (296)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccchhcCCccchHHHHHHHHhHHHHHHHHhC
Confidence            9999999999999999999999988755 57777777777654 6789998 9999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHH-HHHHHHHHHHHHHHHhhhhHHHH
Q 019626          254 GSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTG-FGIACISSLALSGYNADIGIYLL  323 (338)
Q Consensus       254 g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~-~~~~~i~~l~~~g~~~~lg~~y~  323 (338)
                      |++++..++ +++..++|+.         |+|||+++|+||+|+++|++++.+++. +.++.+++.++++..+..|+.|+
T Consensus       163 g~~~~~~~~-l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~  241 (296)
T PRK04375        163 GSLSWEALI-LFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGLLYL  241 (296)
T ss_pred             CCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence            999887776 7778888874         999999999999999999998887764 55555555666666666899999


Q ss_pred             HHHH
Q 019626          324 LVVF  327 (338)
Q Consensus       324 ~~~~  327 (338)
                      +...
T Consensus       242 ~~~~  245 (296)
T PRK04375        242 VVAL  245 (296)
T ss_pred             HHHH
Confidence            8433

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=100.00  E-value=3.9e-37  Score=292.47  Aligned_cols=228  Identities=25%  Similarity=0.362  Sum_probs=192.6

Q ss_pred             HHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCcccc
Q 019626          100 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVAS  179 (338)
Q Consensus       100 ~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~s  179 (338)
                      |+|+|+   .||..+.+..+|+++|.++|.. +..+++..+++++++++++++++|++|||+|+|+|++|+||++||+++
T Consensus         1 ~~~~~l---~rp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQL---TKPRIISLLLITAFAGMWLAPG-GALVNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHH---ccHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            357776   5677788999999999999853 222567778889999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHH-HHHhcc-CCcccCchhHHHHHhHHHHHHHHHHHHhcCCC
Q 019626          180 GLLTPFQGLSFLGFQLLLGLGIL-LQLNNFSRILGASSLL-LVFSYP-LMKRFTFWPQAYLGLTFNWGALLGWAAVKGSL  256 (338)
Q Consensus       180 G~IS~~~A~~~~~~l~~lgl~l~-~~l~~~~~~l~~~~l~-~~~~Ys-~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~  256 (338)
                      |++|++||..++.++.++|+.++ +.+|+....++.++++ +.++|| .+||+++++++++|+.+++++++||.+++|++
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~  156 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGSI  156 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcChhhccCCchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999998844 5589888888888875 489999 59999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHH-H
Q 019626          257 DLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGIYLLL-V  325 (338)
Q Consensus       257 ~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~~y~~-~  325 (338)
                      ++..++ +++..++|+.         |+|||+++|+||+|+++|+|++.++. ...+..+....+++..+.+|+.|++ +
T Consensus       157 ~~~~~~-l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~  235 (280)
T TIGR01473       157 SLGAWL-LFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGWLYLIVA  235 (280)
T ss_pred             CHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            987765 6666777754         99999999999999999999887765 4566666667777778889999995 4


Q ss_pred             HHHHHHh
Q 019626          326 VFCSSRL  332 (338)
Q Consensus       326 ~~i~~~~  332 (338)
                      ++++..+
T Consensus       236 ~~~~~~~  242 (280)
T TIGR01473       236 TLLGALF  242 (280)
T ss_pred             HHHHHHH
Confidence            4444443

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=2.2e-36  Score=290.82  Aligned_cols=230  Identities=22%  Similarity=0.274  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCc
Q 019626           97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRP  176 (338)
Q Consensus        97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RP  176 (338)
                      +++|+|+|++   ||+.+....+|+++|.+++.. + .+++..+++.+++.++.++++|++|||+|+|+|++|+||++||
T Consensus        11 ~~l~~~~~L~---RP~~~~~~~~~~~~G~~la~~-~-~~~~~~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RP   85 (306)
T PRK13362         11 ASLKDYIQVT---KPGIIFGNVISVAGGFFLASK-G-HVDPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRV   85 (306)
T ss_pred             HHHHHHHHHh---CHHHHHHHHHHHHHHHHHHcc-C-CCCHHHHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCC
Confidence            5689999985   688888999999999999842 3 3566667777889999999999999999999999999999999


Q ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHH-HHHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHhc
Q 019626          177 VASGLLTPFQGLSFLGFQLLLGLGILL-QLNNFSRILGASSL-LLVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAVK  253 (338)
Q Consensus       177 I~sG~IS~~~A~~~~~~l~~lgl~l~~-~l~~~~~~l~~~~l-~~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~~  253 (338)
                      +|+|++|++||+.++.++.++|+.++. ..|+.+..++.+++ .+.++||. +||++.++++++|+++++++++||.+++
T Consensus        86 lpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~~lKr~t~~~~~vgg~~ga~p~l~G~~a~~  165 (306)
T PRK13362         86 TVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSLSGAMPPVVGYCAVT  165 (306)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhccCcHhHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999998664 56888777776665 46889995 9999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhHHHH
Q 019626          254 GSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGIYLL  323 (338)
Q Consensus       254 g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~~y~  323 (338)
                      |++++..++ +++..++|+.         |+|||+++|+||+|+++|+|++.+.. ...++.+...+++...+..|+.|+
T Consensus       166 g~~~~~~~~-l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~~s~l~~~~g~~g~~y~  244 (306)
T PRK13362        166 GQFDAGALI-LLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTALLPLAGYTGIGYL  244 (306)
T ss_pred             CCCcHHHHH-HHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHHHHHHHHHHHHHHccccHHHH
Confidence            999988776 7788888884         99999999999999999998877665 445555565666666666788898


Q ss_pred             HHHHHHHHh
Q 019626          324 LVVFCSSRL  332 (338)
Q Consensus       324 ~~~~i~~~~  332 (338)
                      +.+.+.+..
T Consensus       245 ~~~~~~~~~  253 (306)
T PRK13362        245 AVAAATSLW  253 (306)
T ss_pred             HHHHHHHHH
Confidence            866665543

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=7e-35  Score=276.86  Aligned_cols=226  Identities=22%  Similarity=0.292  Sum_probs=189.9

Q ss_pred             HHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCcc
Q 019626           98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPV  177 (338)
Q Consensus        98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI  177 (338)
                      ++++|+|++|++++   ...++|+++|.+++.. + .+++..+++++++++++++++|++|||+|+|+|++|++  +||+
T Consensus         2 ~~~~~~~l~Rp~~~---~~~~~~~~~g~~la~~-~-~~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~--~Rpl   74 (279)
T PRK09573          2 SIKAYFELIRPKNC---IGASIGAIIGYLIASN-F-KIDLKGIILAALVVFLVCAGGNVINDIYDIEIDKINKP--ERPI   74 (279)
T ss_pred             CHHHHHHHHhHhHH---HHHHHHHHHHHHHHcc-C-CcchHHHHHHHHHHHHHHHHHHHHHhhcccccccccCC--CCCc
Confidence            47899999776654   5677799999988853 2 34666778899999999999999999999999999985  8999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHhcCCC
Q 019626          178 ASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAVKGSL  256 (338)
Q Consensus       178 ~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~  256 (338)
                      |+|++|++||+.++.++.++|+.+++.+|+.++.+++++++..++|+. +||++.++|.+.|...+..+++|+.+.++. 
T Consensus        75 ~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Ys~~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~~-  153 (279)
T PRK09573         75 PSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNSILLYLYAKDLKKTGLIGNLIVAYLTGLSFIFGGLAVFNV-  153 (279)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHccc-
Confidence            999999999999999999999999999999999999999988999995 999999999999998888899999888763 


Q ss_pred             CHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 019626          257 DLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGIYLLLVV  326 (338)
Q Consensus       257 ~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~~y~~~~  326 (338)
                       ...++ ++...++|+.         |+|+|+++|+||+|+++|+|++.+++ .+.++.+.++.+++..+..|+.|++++
T Consensus       154 -~~~~~-l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~  231 (279)
T PRK09573        154 -LRIII-LFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGIYYLIVV  231 (279)
T ss_pred             -hHHHH-HHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             33343 5556667763         99999999999999999999988876 466777777777777766899999877


Q ss_pred             HHHHHhh
Q 019626          327 FCSSRLL  333 (338)
Q Consensus       327 ~i~~~~~  333 (338)
                      .+.+..+
T Consensus       232 ~~~~~~~  238 (279)
T PRK09573        232 IICDILF  238 (279)
T ss_pred             HHHhHHH
Confidence            6655443

>PLN02776 prenyltransferase

Probab=100.00  E-value=1e-34  Score=281.56  Aligned_cols=220  Identities=18%  Similarity=0.179  Sum_probs=181.7

Q ss_pred             cccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHH
Q 019626          108 LDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQG  187 (338)
Q Consensus       108 l~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A  187 (338)
                      +.||+.+.+.++.++.|+.+|..  +.+++..+++.++|++++++++|++||++|+|+|++|+||++||+|+|++|+++|
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~--~~~~~~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A   78 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSG--EAIDLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHA   78 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHH
Confidence            36888899999999999999852  2357777888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHH-HHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 019626          188 LSFLGFQLLLGLGI-LLQLNNFSRILGASSLL-LVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMY  265 (338)
Q Consensus       188 ~~~~~~l~~lgl~l-~~~l~~~~~~l~~~~l~-~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~~~~~ll~l~  265 (338)
                      +.++.++.++|+.+ ++++|+.+..+++.+++ +...||++||+++++.+++++.+++++++||.|++|++++..++ ++
T Consensus        79 ~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~lKR~t~~~~~lG~~~Ga~ppL~Gw~Avtg~~~~~~~~-Lf  157 (341)
T PLN02776         79 VAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTPLKQIHPANTWVGAVVGAIPPLMGWAAASGQLDAGAMV-LA  157 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHccCCchhHHHHHHHHHHHHHHHHHHHcCCCCHHHHH-HH
Confidence            99999999999855 56789999999888764 57899999999999876666667799999999999999998887 88


Q ss_pred             HHHHHHHh---------cHHHHHhcCCceeeEee--CcchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 019626          266 ISGVFWTL---------DKEDDLKVGVKSTALRF--GDSSKEWTTGFGIACISSLALSGYNADIGIYLLLVVFCSS  330 (338)
Q Consensus       266 ~~~~~w~~---------D~e~D~~~G~kTlav~~--G~k~a~~l~~~~~~~i~~l~~~g~~~~lg~~y~~~~~i~~  330 (338)
                      +..++|+.         |.|||+++|+|++|+..  |++++.++.....+.....+++......|++|++...+.+
T Consensus       158 ~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~~~~~~~a~~l~  233 (341)
T PLN02776        158 AALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTSSPFALEAALLT  233 (341)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            88888986         99999999999999976  5677777775544444444444444545666665444333

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.7e-36  Score=282.34  Aligned_cols=231  Identities=27%  Similarity=0.370  Sum_probs=200.9

Q ss_pred             cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCC
Q 019626           96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLR  175 (338)
Q Consensus        96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~R  175 (338)
                      .+++|+|+||   .||+...+.++.++.|+.+|.. + ..++..+++..+|..+..+++|++|+++|+|+|++|+||++|
T Consensus        15 ~~~~k~yl~L---tKPrvi~L~~it~~~g~~lA~~-~-~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~R   89 (304)
T COG0109          15 RSTIKDYLQL---TKPRVISLLLITAFAGMLLAPR-G-SINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKR   89 (304)
T ss_pred             HHHHHHHHHH---hCCeeeehHHHHHHHHHHHccc-c-cccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCC
Confidence            3689999997   7899999999999999999974 3 346778889999999999999999999999999999999999


Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHH-HHHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHh
Q 019626          176 PVASGLLTPFQGLSFLGFQLLLGLGIL-LQLNNFSRILGASSL-LLVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAV  252 (338)
Q Consensus       176 PI~sG~IS~~~A~~~~~~l~~lgl~l~-~~l~~~~~~l~~~~l-~~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~  252 (338)
                      |+++|+|+|+||+.++.++.++|+.+. +.+|+...+++++++ +++++||. +||+++++.+++|+.+++|+++||+|+
T Consensus        90 P~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg~aGa~PpliGwaAv  169 (304)
T COG0109          90 PLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMPPLIGWAAV  169 (304)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcccceeeeeccccccccceeeee
Confidence            999999999999999999999999988 778999999999887 68999996 999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcch-HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 019626          253 KGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSS-KEWTTGFGIACISSLALSGYNADIGIYL  322 (338)
Q Consensus       253 ~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~-a~~l~~~~~~~i~~l~~~g~~~~lg~~y  322 (338)
                      +|++++..++ +++..++||.         .+||++++|++++|+..|++. +..+....++.....+++...+..|+.|
T Consensus       170 tg~~~~~a~~-Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g~~g~~Y  248 (304)
T COG0109         170 TGSISLGAIL-LFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLGYVGYLY  248 (304)
T ss_pred             eCCCCchHHH-HHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence            9999998876 6777777774         999999999999999999975 4555566666666666666655567888


Q ss_pred             HHHHHHHHHh
Q 019626          323 LLVVFCSSRL  332 (338)
Q Consensus       323 ~~~~~i~~~~  332 (338)
                      .+.+.+.+..
T Consensus       249 ~v~a~~l~~~  258 (304)
T COG0109         249 LVVATLLGAW  258 (304)
T ss_pred             HHHHHHHHHH
Confidence            8766665543

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.1e-33  Score=268.17  Aligned_cols=226  Identities=19%  Similarity=0.254  Sum_probs=186.0

Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCc
Q 019626           97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRP  176 (338)
Q Consensus        97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RP  176 (338)
                      +++++|+|++|+.++   ....+++++|.++|..  ..+ +..+++++++.+++++++|++|||+|+|+|++| |+ +||
T Consensus         2 ~~l~~~~~l~R~~~~---~~~~~~~~~g~~la~~--~~~-~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~-~Rp   73 (279)
T PRK12884          2 TKMKAYLELLRPEHG---LMAGIAVVLGAIIALG--GLP-LDEALLGFLTAFFASGSANALNDYFDYEVDRIN-RP-DRP   73 (279)
T ss_pred             hHHHHHHHHhhhhHH---HHHHHHHHHHHHHHCC--CCc-hHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhcc-CC-CCC
Confidence            479999999877665   4666778899988753  222 345677889999999999999999999999999 53 999


Q ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHhcCC
Q 019626          177 VASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAVKGS  255 (338)
Q Consensus       177 I~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~~g~  255 (338)
                      +++|++|+++++.++.++.++++.++..+|+..+.++++++++++.||. +||++.+++++.|++.+++++.|+.+.++.
T Consensus        74 l~~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ys~~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~~  153 (279)
T PRK12884         74 IPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVSVLGILYNWKLKEYGLIGNLYVAFLTGMTFIFGGIAVGEL  153 (279)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999998888888889999997 899998899999999999999999887654


Q ss_pred             CCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHH
Q 019626          256 LDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGIYLLLV  325 (338)
Q Consensus       256 ~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~~y~~~  325 (338)
                      .+ ..++ ++...++|+.         |+|||+++|+||+|+++|+|++.+++ .+.+...++..+++..+..++.|++.
T Consensus       154 ~~-~~~~-l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~  231 (279)
T PRK12884        154 NE-AVIL-LAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNILYLAP  231 (279)
T ss_pred             ch-HHHH-HHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            43 3443 4555666654         99999999999999999999988876 45666666666677777778899876


Q ss_pred             HHHHHHh
Q 019626          326 VFCSSRL  332 (338)
Q Consensus       326 ~~i~~~~  332 (338)
                      +.+.+.+
T Consensus       232 ~~~~~~~  238 (279)
T PRK12884        232 VLVADLI  238 (279)
T ss_pred             HHHHHHH
Confidence            6654443

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.5e-33  Score=262.88  Aligned_cols=227  Identities=22%  Similarity=0.283  Sum_probs=180.9

Q ss_pred             HHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCcc
Q 019626           98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPV  177 (338)
Q Consensus        98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI  177 (338)
                      ++|+|+|++|+.+   ..+..+|+++|.+++..  ..++....++.+++.+++++++|++|||+|+|+|++|+|  +||+
T Consensus         3 ~~~~~~~l~Rp~~---~~~~~~~~~~g~~~a~~--~~~~~~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~--~Rpl   75 (276)
T PRK12882          3 TVRGYLELTRPVN---AVVAGVAAFIGAFIAGG--ILSSPSLTGLAFAAVFLATGAGNAINDYFDREIDRINRP--DRPI   75 (276)
T ss_pred             CHHHHHHHHhhhH---HHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCC--CCCc
Confidence            4789999876654   45777789999998843  233443467788999999999999999999999998864  8999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHhcCCC
Q 019626          178 ASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAVKGSL  256 (338)
Q Consensus       178 ~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~  256 (338)
                      ++|++|++||+.++.++.++|+.+++.+|+.++.++..+++..++|+. +||++.+++.+.|...+..++.|+.+.+...
T Consensus        76 ~~G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~~~~~~~~~Yt~~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~~~  155 (276)
T PRK12882         76 PSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNSLLLVLYAETLKGTPGLGNASVAYLTGSTFLFGGAAVGTEG  155 (276)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999988888999996 8999888888887766656777776655333


Q ss_pred             CHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHH
Q 019626          257 DLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTG-FGIACISSLALSGYNADIGIYLLLVV  326 (338)
Q Consensus       257 ~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~-~~~~~i~~l~~~g~~~~lg~~y~~~~  326 (338)
                      ....+. +++..++|+.         |+|+|+++|+||+|+++|+|++.++.. +.++.++...++.+....|+.|++.+
T Consensus       156 ~~~~~~-l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~  234 (276)
T PRK12882        156 LLALLV-LFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTFGLWYLVLV  234 (276)
T ss_pred             hHHHHH-HHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            333333 5555556653         999999999999999999999888764 55666666666666778899999876


Q ss_pred             HHHHHh
Q 019626          327 FCSSRL  332 (338)
Q Consensus       327 ~i~~~~  332 (338)
                      .+.+.+
T Consensus       235 ~~~~~~  240 (276)
T PRK12882        235 APADLV  240 (276)
T ss_pred             HHHHHH
Confidence            665543

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.4e-31  Score=252.05  Aligned_cols=228  Identities=21%  Similarity=0.209  Sum_probs=166.1

Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccC-CC----
Q 019626           97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMV-ER----  171 (338)
Q Consensus        97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~-~r----  171 (338)
                      +++++|+|++|++   ...+...|+++|.++|....+.+++...+++++++.++..++|++|||+|+|+|++| +|    
T Consensus         3 ~~~~~~~~l~Rp~---~l~~~~~~~~~g~~lA~~~~g~~~~~~~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r   79 (297)
T PRK12871          3 ETLKAYIDLTRAH---FLPAWPLLFCSGLVLAFANYGGFSWELTIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR   79 (297)
T ss_pred             chHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence            4789999998754   333444555688888742122357765554455555666778999999999999864 32    


Q ss_pred             ----CCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHhccCCcccCchh--HHHHHhHH
Q 019626          172 ----TRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNN----FSRILGASSLLLVFSYPLMKRFTFWP--QAYLGLTF  241 (338)
Q Consensus       172 ----t~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~----~~~~l~~~~l~~~~~Ys~lKr~~~~~--~~v~gl~~  241 (338)
                          |++||+++|++|++||+.++.++.++|+.++..++.    ..+.+++.+.+.++.|+..||.+.++  ++++|+.+
T Consensus        80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~~kr~~~~p~~~l~G~~~~  159 (297)
T PRK12871         80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQVKKRNQKYPVAQLLGRTDF  159 (297)
T ss_pred             cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence                479999999999999999999999999888766544    45566777778899999888876665  44566778


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHH-HHHHHHHHHHHHHH
Q 019626          242 NWGALLGWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEW-TTGFGIACISSLAL  311 (338)
Q Consensus       242 al~~l~g~~a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~-l~~~~~~~i~~l~~  311 (338)
                      ++++++||. ++|+++...++ +++..++|+.         |+|||+++|+||+|+++|++++.+ +..+..+.++  ..
T Consensus       160 ~~~~~~g~~-~~g~~~~~~~l-l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l--~~  235 (297)
T PRK12871        160 TLFPAAGYL-CYGQPDMTALL-YMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFL--AA  235 (297)
T ss_pred             HHHHHHHHH-HhCCCcHHHHH-HHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHH--HH
Confidence            888888875 57888887765 6677788875         999999999999999999997764 4444444443  23


Q ss_pred             HHHHhhhhHH-HHHHHHHHHH
Q 019626          312 SGYNADIGIY-LLLVVFCSSR  331 (338)
Q Consensus       312 ~g~~~~lg~~-y~~~~~i~~~  331 (338)
                      .+...++|+. |+..+.+.+.
T Consensus       236 ~~~~~~~g~~~~~~~~~~~~~  256 (297)
T PRK12871        236 IFFLRELGPIALYGFLAGFVL  256 (297)
T ss_pred             HHHHHHhhHHHHHHHHHHHHH
Confidence            3556677866 4444344443

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=1.1e-30  Score=253.73  Aligned_cols=230  Identities=23%  Similarity=0.320  Sum_probs=178.5

Q ss_pred             cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHH----HHHHHHHHHHHHHHHHHHhhhcccccccccCCC
Q 019626           96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFK----MMALFGCGALLLRGAGCTVNDLLDRDIDNMVER  171 (338)
Q Consensus        96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~----~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~r  171 (338)
                      .+++|+|+|++|   |. +++.++|+++|.++|.. +..+++.    .+..++++..+..+++|++|||+|+|+|++|+|
T Consensus         9 ~~~~k~~l~L~k---P~-t~l~~~p~~~g~~lA~g-~~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~r   83 (331)
T PRK12392          9 VDKIRAHLELLD---PV-TWISVFPCLAGGVMASG-AMQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEP   83 (331)
T ss_pred             hHHHHHHHHHHC---HH-HHHHHHHHHHHHHHHcC-CCCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCC
Confidence            468999999865   53 44689999999998852 1112221    122234444556678999999999999999999


Q ss_pred             CCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhH--------HHHHHHHHHHHHHHhcc---C-CcccCchhHHHHHh
Q 019626          172 TRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNN--------FSRILGASSLLLVFSYP---L-MKRFTFWPQAYLGL  239 (338)
Q Consensus       172 t~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~--------~~~~l~~~~l~~~~~Ys---~-lKr~~~~~~~v~gl  239 (338)
                      |  ||+++|++|++|++.++.++.++|++++..++.        ..+..++++++++++||   + +||...+++..+|+
T Consensus        84 t--Rpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl  161 (331)
T PRK12392         84 T--RPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGF  161 (331)
T ss_pred             C--CCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHH
Confidence            5  999999999999999999999998887766542        22334567788899996   2 78887778888899


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHH-HHHHHH
Q 019626          240 TFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGI-ACISSL  309 (338)
Q Consensus       240 ~~al~~l~g~~a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~-~~i~~l  309 (338)
                      ++++.+.+++.+..|++++..++ +++..++|+.         |+|+|++.|+||+|+++|++++.+++.+.. ++++.+
T Consensus       162 ~~~~~~~~~~~a~~g~~~~~~~~-l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~  240 (331)
T PRK12392        162 SYGFITFLSANALFSDIRPEVVW-LAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVF  240 (331)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHH
Confidence            99888888888888888877655 5556666654         999999999999999999999998876544 777778


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhh
Q 019626          310 ALSGYNADIGIYLLLVVFCSSRLL  333 (338)
Q Consensus       310 ~~~g~~~~lg~~y~~~~~i~~~~~  333 (338)
                      +..++..++++.||+.+.+.+..+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~  264 (331)
T PRK12392        241 AWLAWSWGFTVLMYFILVGLVLNI  264 (331)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHH
Confidence            888888889988888776666554

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=6.4e-31  Score=249.40  Aligned_cols=226  Identities=21%  Similarity=0.326  Sum_probs=173.1

Q ss_pred             HHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCcc
Q 019626           98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPV  177 (338)
Q Consensus        98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI  177 (338)
                      ++|+|+|++   ||+.+.+..++.+.|.+++..  +.+++...++++++.++.++++|++|||+|+|+|++|++  +||+
T Consensus         2 ~l~~~~~l~---Rp~~~~~~~~~~~~G~~la~~--~~~~~~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~--~Rpl   74 (277)
T PRK12883          2 ELKAFIEIT---RPHNCILAGIVGILGSLVALG--GIPPIKTLILIFLVVYLGCSGGNTINDYFDYEIDKINRP--NRPL   74 (277)
T ss_pred             CHHHHHHHH---hhhHHHHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHHHHHHHHhHHHhhhhHhccccCCC--CCCC
Confidence            478899985   555666778888888888742  244555566778888899999999999999999998764  8999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHhcCCC
Q 019626          178 ASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAVKGSL  256 (338)
Q Consensus       178 ~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~  256 (338)
                      ++|++|+++|..++.++.++|+.+++.+|+..+.+++.+.+++++|+. +||.+.+++.+.|...+..++.|+.++ +++
T Consensus        75 ~sG~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~Y~~~~k~~~~lg~~~vg~~~g~~~~~g~~a~-~~~  153 (277)
T PRK12883         75 PRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYVLMFLYAWKLKPLPFIGNVVVALLTGATPIYGAIAV-GRI  153 (277)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHHHHHh-ccc
Confidence            999999999999999999999999999999999888888888999997 899888888888887766667888776 667


Q ss_pred             CHHHHHH--HHHHHHHHHh-----cHHHHHhcCCceeeEeeCcchHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 019626          257 DLAVVFP--MYISGVFWTL-----DKEDDLKVGVKSTALRFGDSSKEWTTG-FGIACISSLALSGYNADIGIYLLLVVFC  328 (338)
Q Consensus       257 ~~~~ll~--l~~~~~~w~~-----D~e~D~~~G~kTlav~~G~k~a~~l~~-~~~~~i~~l~~~g~~~~lg~~y~~~~~i  328 (338)
                      ++..++.  .++..+.++.     |+|+|+++|+||+|+++|+|++.++.. +.++.++...++.. .+.++.|+..+.+
T Consensus       154 ~~~~~~~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~~~~~~l~~~-~~~~~~y~~~~~~  232 (277)
T PRK12883        154 GLAGYLAICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTVIASFLPVK-AGIGLGYLPIIIV  232 (277)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHH
Confidence            7654431  1222222322     999999999999999999998887764 44444444444433 3447778765554


Q ss_pred             HHHh
Q 019626          329 SSRL  332 (338)
Q Consensus       329 ~~~~  332 (338)
                      +..+
T Consensus       233 ~~~~  236 (277)
T PRK12883        233 DAII  236 (277)
T ss_pred             HHHH
Confidence            4443

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.98  E-value=2.1e-30  Score=250.38  Aligned_cols=195  Identities=21%  Similarity=0.307  Sum_probs=158.2

Q ss_pred             cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHH------HHHHHHHHHHHHHHHHHhhhcccccccccC
Q 019626           96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKM------MALFGCGALLLRGAGCTVNDLLDRDIDNMV  169 (338)
Q Consensus        96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~------~ll~~l~~~l~~~a~~~lND~~D~~iD~~~  169 (338)
                      ++++++|++++|   |+.+...++|.+.|++.+..    .++..      ++.++++..++++++|++|||+|+|+|++|
T Consensus        24 ~~~~~~~~~l~R---P~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~   96 (314)
T PRK07566         24 TSIWKARLQLMK---PITWFPPMWAFLCGAVSSGA----FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAIN   96 (314)
T ss_pred             chHHHHHHHHhC---CcchHHHHHHHHHHHHHcCC----CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccC
Confidence            578999999865   56666777888878775421    22222      344667788899999999999999999998


Q ss_pred             CCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc----CCcccCchhHHHHHhHH-HHH
Q 019626          170 ERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYP----LMKRFTFWPQAYLGLTF-NWG  244 (338)
Q Consensus       170 ~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys----~lKr~~~~~~~v~gl~~-al~  244 (338)
                      +|  +||+++|++|+++++.++.++.++|+.+++.+|+....+++.+++.+++||    .+||+++++++++|+++ +++
T Consensus        97 ~~--~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~  174 (314)
T PRK07566         97 EP--YRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLP  174 (314)
T ss_pred             CC--CCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHH
Confidence            76  899999999999999999999999999999999999999999998899999    38999999999998875 567


Q ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHH
Q 019626          245 ALLGWAAVKG-SLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTG  300 (338)
Q Consensus       245 ~l~g~~a~~g-~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~  300 (338)
                      ++.|+.+.++ .+++..++ +++...+|..         |+|+|+++|+||+|+++|+|++.+++.
T Consensus       175 ~~~g~~~~~~~~~~~~~~l-~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~  239 (314)
T PRK07566        175 WWAGAAAFGAGLPSWPIVI-LALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIAC  239 (314)
T ss_pred             HHHHHHHhccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHH
Confidence            7888887764 56666554 3333333332         999999999999999999999888764

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.98  E-value=4e-30  Score=245.54  Aligned_cols=226  Identities=20%  Similarity=0.112  Sum_probs=179.4

Q ss_pred             HHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccc--cccccCCCCCCC
Q 019626           98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDR--DIDNMVERTRLR  175 (338)
Q Consensus        98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~--~iD~~~~rt~~R  175 (338)
                      ++|+|+|++   ||..+...++|+++|.++|...+ ..++..+++.+++++++++++|.+|||+|+  |+|+++.|+++|
T Consensus         2 ~~~~~~~~~---Rp~~~~~~~~p~l~G~~~a~~~~-~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r   77 (293)
T PRK06080          2 TFKAWLELA---RPKTLPAAFAPVLVGTALAYWLG-SFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR   77 (293)
T ss_pred             CHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHcC-CccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence            478899985   56667789999999999985433 357777888999999999999999999998  689888888899


Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHhccCCc---ccCchhHHHHHhHHHHHH-HH
Q 019626          176 PVASGLLTPFQGLSFLGFQLLLGLGIL----LQLNNFSRILGASSLLLVFSYPLMK---RFTFWPQAYLGLTFNWGA-LL  247 (338)
Q Consensus       176 PI~sG~IS~~~A~~~~~~l~~lgl~l~----~~l~~~~~~l~~~~l~~~~~Ys~lK---r~~~~~~~v~gl~~al~~-l~  247 (338)
                      |+++|++|++++..++.++.+++++++    ...++..+.+++++++.+++||..|   ++..++|+..|++++... ..
T Consensus        78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~  157 (293)
T PRK06080         78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLG  157 (293)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHH
Confidence            999999999999988877776655444    4457888888899999999999633   355689999888876554 44


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhh
Q 019626          248 GWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNAD  317 (338)
Q Consensus       248 g~~a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~  317 (338)
                      +++.+++++++..++ +.++..+|+.         |+|+|+++|+||+|+++|+|++.+++ .+..++.++.....+.+.
T Consensus       158 ~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~  236 (293)
T PRK06080        158 TYYLQAGTVDSAVFL-PALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGL  236 (293)
T ss_pred             HHHHhcCCCCHHHHH-HHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            577778888877665 4445555543         99999999999999999999988876 577777887777777777


Q ss_pred             hhHHHHHHHHH
Q 019626          318 IGIYLLLVVFC  328 (338)
Q Consensus       318 lg~~y~~~~~i  328 (338)
                      +++.|+..++.
T Consensus       237 ~~~~~ll~ll~  247 (293)
T PRK06080        237 ASPWGLLFLLS  247 (293)
T ss_pred             hhHHHHHHHHH
Confidence            78777754443

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.97  E-value=7.8e-30  Score=251.19  Aligned_cols=216  Identities=25%  Similarity=0.327  Sum_probs=162.2

Q ss_pred             cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHH------HHHHHHHHHHHHHHHHHHhhhcccccccccC
Q 019626           96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFK------MMALFGCGALLLRGAGCTVNDLLDRDIDNMV  169 (338)
Q Consensus        96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~------~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~  169 (338)
                      .+++|+|+|+   .||+.+...++|++.|.+..   |+. +|.      ..++++++..++++++|++|||+|+|+|++|
T Consensus        82 ~~~~k~~l~L---~RP~t~~~~~~~v~~G~~~~---g~~-~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~  154 (375)
T PLN00012         82 TDIWKIRLQL---TKPVTWPPLVWGVLCGAAAS---GNF-HWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAIN  154 (375)
T ss_pred             hHHHHHHHHH---hCHHHHHHHHHHHHHHHHHc---CCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccC
Confidence            4789999997   56777888899999998842   322 332      2466778888999999999999999999999


Q ss_pred             CCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHhcc----CCcccCchhHHHHH
Q 019626          170 ERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQL-------NNFSRILGASSLLLVFSYP----LMKRFTFWPQAYLG  238 (338)
Q Consensus       170 ~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l-------~~~~~~l~~~~l~~~~~Ys----~lKr~~~~~~~v~g  238 (338)
                      +|  +||+++|++|+++++..+.++.++++.+++.+       |+..+++++++++.+++||    .+||++++++++.|
T Consensus       155 ~~--~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG  232 (375)
T PLN00012        155 EP--YRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALG  232 (375)
T ss_pred             CC--CCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHH
Confidence            86  89999999999999998777777666665543       4567778888888899998    38999999988877


Q ss_pred             hHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHHHHHHHHH
Q 019626          239 LTFN-WGALLGWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISS  308 (338)
Q Consensus       239 l~~a-l~~l~g~~a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~~~~~i~~  308 (338)
                      ..++ +++..|+ +++|.+++..++ +++..++|..         |+|+|+++|+||+||++|++++.+++...+.....
T Consensus       233 ~~~~~lp~~~g~-a~~g~~s~~~il-lal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l  310 (375)
T PLN00012        233 ASYISLPWWAGQ-ALFGTLTPDVVV-LTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQL  310 (375)
T ss_pred             HHHHHHHHHHHH-HHcCCCCHHHHH-HHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHH
Confidence            7654 4555555 668888887765 4444445543         99999999999999999999998887543333333


Q ss_pred             HHHHHHHhhhhHHHH
Q 019626          309 LALSGYNADIGIYLL  323 (338)
Q Consensus       309 l~~~g~~~~lg~~y~  323 (338)
                      . +.++....+..+|
T Consensus       311 ~-~~~~l~~~~~~~y  324 (375)
T PLN00012        311 S-VAGYLLAIGKPYY  324 (375)
T ss_pred             H-HHHHHHHHhHHHH
Confidence            3 3334444433333

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.97  E-value=1.4e-29  Score=240.94  Aligned_cols=194  Identities=21%  Similarity=0.279  Sum_probs=152.7

Q ss_pred             HHHHHHccccchHHHHHHHHHHHHHHhhcCCCCC-CcHHHH-HHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccc
Q 019626          101 AYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHF-PDFKMM-ALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVA  178 (338)
Q Consensus       101 ~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~-~~l~~~-ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~  178 (338)
                      +|+|+   .||+.+....+|++.|.+++....+. .++... +.++++..++++++|++|||+|+|+|++|++  +||++
T Consensus         2 ~~~~l---~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~--~Rpi~   76 (283)
T TIGR01476         2 AHIEL---MKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEP--QRPIP   76 (283)
T ss_pred             ceeEe---cCCceehhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCC--CCCCC
Confidence            45554   67777889999999999887322222 345433 3367788999999999999999999999986  89999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccC----CcccCchhHHHHHhHHH-HHHHHHHHHh
Q 019626          179 SGLLTPFQGLSFLGFQLLLGLGILLQLNNFS-RILGASSLLLVFSYPL----MKRFTFWPQAYLGLTFN-WGALLGWAAV  252 (338)
Q Consensus       179 sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~-~~l~~~~l~~~~~Ys~----lKr~~~~~~~v~gl~~a-l~~l~g~~a~  252 (338)
                      +|++|+++++.++.++..+++++++.++.+. ..+++.+++.+++||.    +||++++++++.|++++ .+...++.+.
T Consensus        77 ~G~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~  156 (283)
T TIGR01476        77 SGIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIF  156 (283)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999888876655 6778888888999994    89998899999888754 4555566554


Q ss_pred             cCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHHH
Q 019626          253 KGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTGF  301 (338)
Q Consensus       253 ~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~~  301 (338)
                       +++++..++ ..+...+|..         |+|+|+++|+||+|+++|+|++.+++..
T Consensus       157 -~~~~~~~~~-~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~  212 (283)
T TIGR01476       157 -APLTWQSVV-VALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVT  212 (283)
T ss_pred             -CCCCHHHHH-HHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHH
Confidence             567776554 2333333321         9999999999999999999999888643

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=99.97  E-value=3.2e-29  Score=241.47  Aligned_cols=227  Identities=21%  Similarity=0.181  Sum_probs=162.0

Q ss_pred             cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcC-CCCCCcHHHHHHHHHHHHHHHHHHHH----hhhcccccccccCC
Q 019626           96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAP-RGHFPDFKMMALFGCGALLLRGAGCT----VNDLLDRDIDNMVE  170 (338)
Q Consensus        96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~-~g~~~~l~~~ll~~l~~~l~~~a~~~----lND~~D~~iD~~~~  170 (338)
                      .+.+++|+|++|++++.++.+.   ...+..++.. .+..+++. .+...++.++.+.++|+    +|||+|+|+|++|+
T Consensus        10 ~~~l~~~~~l~Rp~t~igt~l~---~~~~~l~a~~~~~~~~~~~-~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~ink   85 (308)
T PRK12887         10 TSWLYALWKFSRPHTIIGTSLS---VLGLYLIAIAASSNTIALA-NLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINK   85 (308)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHhhccchhhHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCC
Confidence            4678999999999999866554   4444444321 11112222 45566777777888888    99999999999998


Q ss_pred             CCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccC----CcccCchhHHHHHhHHHHHHH
Q 019626          171 RTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPL----MKRFTFWPQAYLGLTFNWGAL  246 (338)
Q Consensus       171 rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~----lKr~~~~~~~v~gl~~al~~l  246 (338)
                      +  +||+++|++|+++++.+..++.++|+++++.+|+..+.+++++.+++++||.    +||++.++++..+...+..+.
T Consensus        86 p--~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~i~~  163 (308)
T PRK12887         86 P--HLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVIVN  163 (308)
T ss_pred             C--CCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHHHHH
Confidence            6  8999999999999999999999999999999999999999999999999994    899988887755444443333


Q ss_pred             HH----HHHh---cCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHH-HHHHHHHHH
Q 019626          247 LG----WAAV---KGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTG-FGIACISSL  309 (338)
Q Consensus       247 ~g----~~a~---~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~-~~~~~i~~l  309 (338)
                      .|    +.+.   .+.++...++ +.+..++|+.         |+|+|++.|+||+|+++|+|++.+++. +..++.+..
T Consensus       164 ~g~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~  242 (308)
T PRK12887        164 LGLFLHFQWLLGGSVLIPPTVWL-LTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGM  242 (308)
T ss_pred             HHHHHHHHHHHhccccCcHHHHH-HHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHH
Confidence            33    2221   2245555554 4445555553         999999999999999999999988763 444444444


Q ss_pred             HHHHH--HhhhhHHHH-HHHHHH
Q 019626          310 ALSGY--NADIGIYLL-LVVFCS  329 (338)
Q Consensus       310 ~~~g~--~~~lg~~y~-~~~~i~  329 (338)
                      ++.+.  ....+..|+ .+..+.
T Consensus       243 i~~~~~~~~~~~~~~~~~~~~~~  265 (308)
T PRK12887        243 IAVGLLSLPTVNPAFLIVSHLIL  265 (308)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHH
Confidence            43333  233445555 344433

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.97  E-value=1.7e-28  Score=236.33  Aligned_cols=195  Identities=22%  Similarity=0.308  Sum_probs=154.7

Q ss_pred             cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHH------HHHHHHHHHHHHHHHHHhhhcccccccccC
Q 019626           96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKM------MALFGCGALLLRGAGCTVNDLLDRDIDNMV  169 (338)
Q Consensus        96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~------~ll~~l~~~l~~~a~~~lND~~D~~iD~~~  169 (338)
                      .+++|+|+|+   .||+.+...++|++.|...+   +++ ++..      ++.+++++.++++++|++|||+|+|+|+.|
T Consensus        13 ~~~~~~~~~l---~RP~~~~~~~~~~~~G~~~~---~~~-~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~   85 (306)
T TIGR02056        13 TNIWKIRLQL---MKPITWIPLIWGVVCGAAAS---GNF-HWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAIN   85 (306)
T ss_pred             hhHHHHHHHH---cChHhhHHHHHHHHHHHHHc---CCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccC
Confidence            4678999998   55677778899999998853   222 3322      355567889999999999999999999999


Q ss_pred             CCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHhcc----CCcccCchhHHHHH
Q 019626          170 ERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQL-------NNFSRILGASSLLLVFSYP----LMKRFTFWPQAYLG  238 (338)
Q Consensus       170 ~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l-------~~~~~~l~~~~l~~~~~Ys----~lKr~~~~~~~v~g  238 (338)
                      +|  +||+++|++|+++++.++.++.++++++++.+       ++..+.+++++++.+++||    .+||+++++++..|
T Consensus        86 ~~--~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg  163 (306)
T TIGR02056        86 EP--YRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALG  163 (306)
T ss_pred             CC--CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHH
Confidence            87  79999999999999999999888888877654       3567788888998899999    28898889888877


Q ss_pred             hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHHH
Q 019626          239 LTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTTG  300 (338)
Q Consensus       239 l~~al~~l~g~~a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~~  300 (338)
                      ..++..+..++.+++|++++..++ +++...+|+.         |+|+|+++|+||+|+++|+|++.+++.
T Consensus       164 ~~~~~~~~~~~~a~~g~~~~~~~l-~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~  233 (306)
T TIGR02056       164 ASYIALPWWAGHALFGELNPDIAV-LTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICV  233 (306)
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHH
Confidence            665544444433667888887665 4444445543         999999999999999999999888865

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=2.7e-28  Score=233.86  Aligned_cols=228  Identities=18%  Similarity=0.135  Sum_probs=169.9

Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccc--cccccCCCC--
Q 019626           97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDR--DIDNMVERT--  172 (338)
Q Consensus        97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~--~iD~~~~rt--  172 (338)
                      +++|.|++.   .||....++++|+++|.++|....+..++..+++++++++++|+++|++|||+|+  |.|++ +||  
T Consensus         2 ~~~~~~~~~---~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~-~rt~~   77 (296)
T PRK05951          2 QNAKLFFIF---TRPWSFVMTAIVAFFSIAYGYYLFRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHH-ETTGY   77 (296)
T ss_pred             ccHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccc-cccCC
Confidence            478999997   4577778999999999999875433468888999999999999999999999995  55654 455  


Q ss_pred             CCCccccCCCCHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHhccC---CcccCchhHHHHHhHHH-HH
Q 019626          173 RLRPVASGLLTPFQGLSFLGFQLLLGLGIL----LQLNNFSRILGASSLLLVFSYPL---MKRFTFWPQAYLGLTFN-WG  244 (338)
Q Consensus       173 ~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~----~~l~~~~~~l~~~~l~~~~~Ys~---lKr~~~~~~~v~gl~~a-l~  244 (338)
                      ++||+++|++|++|+..++.++.++++.++    +..++..+.+++++++.++.||.   ..++.+++|...+++++ ..
T Consensus        78 ~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~~~  157 (296)
T PRK05951         78 RQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHML  157 (296)
T ss_pred             CCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHHHH
Confidence            689999999999999999888776665443    34577788899999999999972   33445789999988877 44


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHH--------h-cHHHHHhcCCceeeEeeCcchHHHHHHHHH---HHHHHHHHH
Q 019626          245 ALLGWAAVKGSLDLAVVFPMYISGVFWT--------L-DKEDDLKVGVKSTALRFGDSSKEWTTGFGI---ACISSLALS  312 (338)
Q Consensus       245 ~l~g~~a~~g~~~~~~ll~l~~~~~~w~--------~-D~e~D~~~G~kTlav~~G~k~a~~l~~~~~---~~i~~l~~~  312 (338)
                      ++..++++++.+++..++ ..+...+++        + |+|+|+++|+||+|+++|+|++.+...+..   +.++...+.
T Consensus       158 vlg~~~~~~~~~~~~~~~-~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a~~~~~~~~~~~~~~~~~~~~  236 (296)
T PRK05951        158 VMGLIYVWLGNLSSPNLL-AGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGAALYIFALLSPYVILQILLIA  236 (296)
T ss_pred             HHHHHHHHhCcccHHHHH-HHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            555677888888877654 233322222        1 999999999999999999999944333333   344444445


Q ss_pred             HHHhhhhHHHHHHHHHH
Q 019626          313 GYNADIGIYLLLVVFCS  329 (338)
Q Consensus       313 g~~~~lg~~y~~~~~i~  329 (338)
                      ++....++.+++++...
T Consensus       237 g~~~~~~l~~ll~lp~~  253 (296)
T PRK05951        237 ILTPLISLWALLSLLVA  253 (296)
T ss_pred             hhhhHHHHHHHHHHHHH
Confidence            55555555666555443

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.96  E-value=9.8e-27  Score=225.06  Aligned_cols=225  Identities=14%  Similarity=0.134  Sum_probs=169.5

Q ss_pred             HHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccC--CCCCCC
Q 019626           98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMV--ERTRLR  175 (338)
Q Consensus        98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~--~rt~~R  175 (338)
                      ++|.|++++|   |....++++|+++|.++|...++..++..+++++++++++|+++|++|||+|++.|+++  .++.+|
T Consensus         2 ~~~~~~~~~R---p~tl~~s~~pvllG~a~a~~~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~   78 (317)
T PRK13387          2 SAKLFLKLVE---IHTKIASFFPVILGTLFSLYVAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGN   78 (317)
T ss_pred             CHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcc
Confidence            3688998854   56667999999999999864333457878888999999999999999999997654444  334579


Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHhccC----CcccCchhHHHHHhHHHHHHHH
Q 019626          176 PVASGLLTPFQGLSFLGFQLLLGLG----ILLQLNNFSRILGASSLLLVFSYPL----MKRFTFWPQAYLGLTFNWGALL  247 (338)
Q Consensus       176 PI~sG~IS~~~A~~~~~~l~~lgl~----l~~~l~~~~~~l~~~~l~~~~~Ys~----lKr~~~~~~~v~gl~~al~~l~  247 (338)
                      ++++|.+|++++...+.++.+++++    +++..|+..+.+|+++++.+++||.    +||+ +++|+..++++++.++.
T Consensus        79 ~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~~~~~~Yt~gP~~l~y~-gLGe~~v~i~~G~~~v~  157 (317)
T PRK13387         79 GIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICFAIGILYTGGPLPLSRM-PLGEIFSGLTMGFGIFL  157 (317)
T ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhhhhcCCCcccccC-ccHHHHHHHHHHHHHHH
Confidence            9999999999999888887776666    6667899999999999999999983    5555 48999999888766554


Q ss_pred             -HHHHhcCCCCHHHHH-------------------HHHHHHHHHH--------h-cHHHHHhcCCceeeEeeCcchHHHH
Q 019626          248 -GWAAVKGSLDLAVVF-------------------PMYISGVFWT--------L-DKEDDLKVGVKSTALRFGDSSKEWT  298 (338)
Q Consensus       248 -g~~a~~g~~~~~~ll-------------------~l~~~~~~w~--------~-D~e~D~~~G~kTlav~~G~k~a~~l  298 (338)
                       +++.+++.+++..++                   ...++..+.+        + |+|+|+++|+||+|+++|+|++.++
T Consensus       158 g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l  237 (317)
T PRK13387        158 LAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVL  237 (317)
T ss_pred             HHHHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHH
Confidence             466777776654321                   0122222211        1 9999999999999999999999988


Q ss_pred             H-HHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 019626          299 T-GFGIACISSLALSGYNADIGIYLLLVV  326 (338)
Q Consensus       299 ~-~~~~~~i~~l~~~g~~~~lg~~y~~~~  326 (338)
                      + .+.+++.+..+.....+.+++.+++.+
T Consensus       238 ~~~l~~~a~l~~~~~v~~g~lp~~~ll~l  266 (317)
T PRK13387        238 FAILFYASYLAIAVIVLMGYISPWALLSF  266 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            6 456666666665555555666655443

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.95  E-value=2.2e-28  Score=231.06  Aligned_cols=250  Identities=21%  Similarity=0.316  Sum_probs=199.2

Q ss_pred             CCCCcchhhhccccccccCCC--CCCcccccccceeccCCCCCCC-CCCCCCccc----ccchhcc-----cc-HHHHHH
Q 019626           36 NPKLNPHIAKLTNHDRWVPNS--EQNFRYVWVASICTTPSQSSVE-KETSSSNEK----SSWIDLY-----LP-RQARAY  102 (338)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~----~~~~~~~-----~~-~~l~~y  102 (338)
                      .|..+|++..|.+|++.++++  ++.+.-.....++...++.+.+ .+..||.+-    ..|+...     +| +..+.|
T Consensus        18 rp~p~p~~~~~~~~~~a~~~k~q~~~~~~~~~~~is~s~~d~~~~~a~~~pd~~v~~~~~~~~s~~l~ly~lp~k~~~~y   97 (409)
T KOG1380|consen   18 RPLPNPVLIPFSRETSAVNSKSQPTVMTTLTAKLISLSRKDANTVFATATPDSQVTATTGRWSSRPLALYTLPGKYARCY   97 (409)
T ss_pred             cCCCCCccchhhhhhhcccccccCcccccccccceecccCccccchhhcCCCcceeecchhhcccchhhcCCCcchHHHH
Confidence            355568888999999999887  3333322222233333333211 112222221    1344332     23 456899


Q ss_pred             HHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCC
Q 019626          103 AKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLL  182 (338)
Q Consensus       103 l~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~I  182 (338)
                      +||   .||+.+.++++.++-|+++|.++   .++..+++..+|+.+..+++|.+|++++...|.+|+||+.||+++|+|
T Consensus        98 ~eL---sK~rLT~LVV~tt~~gYalap~p---~s~~~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g~i  171 (409)
T KOG1380|consen   98 LEL---SKPRLTMLVVLTTMTGYALAPGP---FSFPTLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRGRI  171 (409)
T ss_pred             HHh---cccceEEEEeeeccccccccccC---CCcchhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccccccCcc
Confidence            997   78888889999999999998643   467778899999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHH-HHHHhccCCcccCchhHHHHHhHHHHHHHHHHHHhcCCCCHHH
Q 019626          183 TPFQGLSFLGFQLLLGLGILLQ-LNNFSRILGASSL-LLVFSYPLMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAV  260 (338)
Q Consensus       183 S~~~A~~~~~~l~~lgl~l~~~-l~~~~~~l~~~~l-~~~~~Ys~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~~~~~  260 (338)
                      ||.+|+.++.+....|+.+.++ +|+....+|...+ ++..+|+++||..+.+.+++++.+++|+++||+|.+|..++..
T Consensus       172 sp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTPlKrihiinTWvGavVGAIPPLMGwAAasg~l~~ga  251 (409)
T KOG1380|consen  172 SPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTPLKRIHIINTWVGAVVGAIPPLMGWAAASGLLDPGA  251 (409)
T ss_pred             ChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccchhhhhhhhhHHHHHhccCCccchhhhhccCCCccH
Confidence            9999999999999999887765 8999999999988 6799999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCc
Q 019626          261 VFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGD  292 (338)
Q Consensus       261 ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~  292 (338)
                      ++ +....+.|++         -++|+.++|.+++++.--.
T Consensus       252 ~i-La~~LyaWQfPHFnaLS~~lR~DYs~~GY~Mma~~np~  291 (409)
T KOG1380|consen  252 MI-LAGILYAWQFPHFNALSWNLRNDYSKAGYRMMAVTNPG  291 (409)
T ss_pred             HH-HHHHHHHhcccchhhhhhhhchhhhhccEEEEEeeccc
Confidence            87 7778889997         6778889999999998543

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.94  E-value=6.1e-25  Score=209.58  Aligned_cols=200  Identities=20%  Similarity=0.103  Sum_probs=152.5

Q ss_pred             cchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccccc--ccccCCCCCCCccccCCCCHHHH
Q 019626          110 KPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRD--IDNMVERTRLRPVASGLLTPFQG  187 (338)
Q Consensus       110 rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~--iD~~~~rt~~RPI~sG~IS~~~A  187 (338)
                      ||+....+++|+++|.++|...+ ..++..+++++++++++|+++|.+|||+|++  .|+.++.+..|++++|.+|++++
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v   79 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREV   79 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcC-CccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHH
Confidence            57777899999999999997655 5688889999999999999999999999974  57654444589999999999999


Q ss_pred             HHHHHHHHHHHHH----HHHHhhH------HHHHHHHHHHHHHHhccC-Cc--ccCchhHHHHHhHHHHH-HHHHHHHhc
Q 019626          188 LSFLGFQLLLGLG----ILLQLNN------FSRILGASSLLLVFSYPL-MK--RFTFWPQAYLGLTFNWG-ALLGWAAVK  253 (338)
Q Consensus       188 ~~~~~~l~~lgl~----l~~~l~~------~~~~l~~~~l~~~~~Ys~-lK--r~~~~~~~v~gl~~al~-~l~g~~a~~  253 (338)
                      ...+.++++++++    +.+..++      ..+.+|+++++.+++||. .+  ++..++|+..+++++.. ++.++++++
T Consensus        80 ~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~yvq~  159 (284)
T TIGR00751        80 KTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQYLQA  159 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            9888777765544    4444565      456788899999999994 33  23457899999887754 455578889


Q ss_pred             CCCCHHHHHHHHHHHHHHH--------h-cHHHHHhcCCceeeEeeCcchHHHHHH-HHHHHHHHHHH
Q 019626          254 GSLDLAVVFPMYISGVFWT--------L-DKEDDLKVGVKSTALRFGDSSKEWTTG-FGIACISSLAL  311 (338)
Q Consensus       254 g~~~~~~ll~l~~~~~~w~--------~-D~e~D~~~G~kTlav~~G~k~a~~l~~-~~~~~i~~l~~  311 (338)
                      |++++..++ ..++..+.+        + |+|+|+++|+||+|+++|+|++.++.. +...+.++.++
T Consensus       160 ~~~~~~~ll-~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~  226 (284)
T TIGR00751       160 HRVDWVGIL-PAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFV  226 (284)
T ss_pred             CCCCHHHHH-HHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHH
Confidence            999987664 222222221        1 999999999999999999999988864 44444443333

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.94  E-value=3.8e-25  Score=210.57  Aligned_cols=202  Identities=19%  Similarity=0.133  Sum_probs=145.2

Q ss_pred             HHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcH--HHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCcc
Q 019626          100 RAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDF--KMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPV  177 (338)
Q Consensus       100 ~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l--~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI  177 (338)
                      +..-++.+..||..|...++|+.+|+..+   |+..+|  ..+++++......+.+.|.+|||+|+|+|++|+|  +||+
T Consensus        10 ~~l~~ll~~sRP~~wi~t~~~~~~G~~~~---g~~~~~~~~~~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr--~~~i   84 (292)
T PRK13595         10 LPLRRLLLISRPALWVNTVGTLVTGVWLT---GHLYTLDPGVLPLLLYLTLPFNLLIYGLNDLADRETDAASPR--KGGW   84 (292)
T ss_pred             hHHHHHHHHhCcHHHHHHHHHHHHHHHHh---cCcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCC--CCCC
Confidence            33334455689999999999999999766   333565  4566666777788999999999999999999999  5889


Q ss_pred             ccCCCCHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHHhccC----CcccCchhHHHHHhHHHHHHHHHH
Q 019626          178 ASGLLTPFQGLSFLGFQLLL----GLGILLQLNNFSRILGASSLLLVFSYPL----MKRFTFWPQAYLGLTFNWGALLGW  249 (338)
Q Consensus       178 ~sG~IS~~~A~~~~~~l~~l----gl~l~~~l~~~~~~l~~~~l~~~~~Ys~----lKr~~~~~~~v~gl~~al~~l~g~  249 (338)
                      ++|++|++++..+...+...    ++.+++..|+.++.+...+.++.+.||.    +|++..++.+.. ...+++...+ 
T Consensus        85 ~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~-~~~g~p~~~~-  162 (292)
T PRK13595         85 QGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSN-AAYALPLALP-  162 (292)
T ss_pred             CcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHH-HHHHHHHHHH-
Confidence            99999999999875544443    5566677888888888888899999984    555555544432 3345544444 


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHH
Q 019626          250 AAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLAL  311 (338)
Q Consensus       250 ~a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~  311 (338)
                      .++.|.......+   +..++|..         |+|+||+.|+||+|+++|+|++.+++ .+.+++.++...
T Consensus       163 ~~~~g~~~~~~~l---~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~  231 (292)
T PRK13595        163 ALALGAPVPWPPL---LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWP  231 (292)
T ss_pred             HHHcCCcchHHHH---HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHH
Confidence            4455554332221   23334443         99999999999999999999998887 445554444333

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.94  E-value=1.1e-25  Score=208.36  Aligned_cols=179  Identities=26%  Similarity=0.343  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHH
Q 019626          116 LLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQL  195 (338)
Q Consensus       116 l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~  195 (338)
                      +++.|+++|.+.+..  +..++..+....++.++.+.++|.+||+.|+|.|++++++++||+++|+++++++...+.++.
T Consensus         3 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~   80 (257)
T PF01040_consen    3 LSFLPVLAGLALASG--GPFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILL   80 (257)
T ss_pred             HHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHH
Confidence            567788888555532  234676777788888899999999999999999999888889999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhcc---CCcccCchhHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHH
Q 019626          196 LLGLGILLQLNNFSRILGASSLLLVFSYP---LMKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYIS--GVF  270 (338)
Q Consensus       196 ~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys---~lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~~~~~ll~l~~~--~~~  270 (338)
                      ++++.+++..++..+.+.++..+.+++|+   .+||++.+++++.|++++..+..|+.+++++.+...++ ++..  .+.
T Consensus        81 ~l~l~l~~~~~~~~~~~~~~~~~~~~~Ys~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  159 (257)
T PF01040_consen   81 LLGLLLALLLGPWFLLILLLGFLLGLLYSPPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPPPFL-LAIFFFLLI  159 (257)
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHhhhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHHHHH-HHHHHHHHH
Confidence            99999998899988888888888889999   58999988999999999999999999988776655443 2222  111


Q ss_pred             HH------h-cHHHHHhcCCceeeEeeCcchHHH
Q 019626          271 WT------L-DKEDDLKVGVKSTALRFGDSSKEW  297 (338)
Q Consensus       271 w~------~-D~e~D~~~G~kTlav~~G~k~a~~  297 (338)
                      +.      . |+|+|+++|+||+|+++|++++..
T Consensus       160 ~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  160 FAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            11      2 999999999999999999999887

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK08238 hypothetical protein; Validated

Probab=99.93  E-value=4.2e-25  Score=224.09  Aligned_cols=191  Identities=25%  Similarity=0.260  Sum_probs=154.8

Q ss_pred             cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCC
Q 019626           96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLR  175 (338)
Q Consensus        96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~R  175 (338)
                      +.++++|++++|++++.++.+..+|.+++..+.    ....+...++.+++.+++.+++|++||++|+|+|++|+||++|
T Consensus       188 ~~~~~~~~~l~Rp~q~~kn~l~~~p~l~a~~~~----~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~R  263 (479)
T PRK08238        188 PARLRTWLKALRVHQWAKNLLVFVPLLAAHQFG----DLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRR  263 (479)
T ss_pred             chHHHHHHHHhCCcHHHHHHHHHHHHHHhcccC----ChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCC
Confidence            578999999999999999988888887653221    1122445667888888999999999999999999999999999


Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHhcC
Q 019626          176 PVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAVKG  254 (338)
Q Consensus       176 PI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~~g  254 (338)
                      |++||++|+++|+.++.+++++|+++++.+|+.++.+.+..+++.+.||+ +||++.++++++|+++++++++|+.+.+ 
T Consensus       264 PlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ys~~lKr~~~~~~~~la~~~~lr~~~G~~a~~-  342 (479)
T PRK08238        264 PFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVLLAYLALTLAYSLRLKRKVLVDVLTLAALYTLRIIAGAAAIG-  342 (479)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHhcCCccccchHHHHHHHHHHHHHHHHhc-
Confidence            99999999999999999999999999999999776666677788899997 9999999999999999999999998764 


Q ss_pred             CCCHHHHHHHHHHHHHHHh-------cHHHHHhcCCceeeEeeCcc
Q 019626          255 SLDLAVVFPMYISGVFWTL-------DKEDDLKVGVKSTALRFGDS  293 (338)
Q Consensus       255 ~~~~~~ll~l~~~~~~w~~-------D~e~D~~~G~kTlav~~G~k  293 (338)
                       ++...|+..+...+++..       |++.++..|. +-.+.-|..
T Consensus       343 -~~~s~wll~~~~~~~l~la~~KR~~El~~~~~~~~-~r~~~~~Y~  386 (479)
T PRK08238        343 -VALSFWLLAFSMFFFLSLALVKRYTELRRALQRGK-PKIAGRGYR  386 (479)
T ss_pred             -cCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCC-ccccCCCCC
Confidence             566666533444444443       8888878776 434444443

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.93  E-value=6.2e-24  Score=201.84  Aligned_cols=225  Identities=17%  Similarity=0.119  Sum_probs=171.1

Q ss_pred             cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccccc--ccc--cCCC
Q 019626           96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRD--IDN--MVER  171 (338)
Q Consensus        96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~--iD~--~~~r  171 (338)
                      .++.+.|+|++|   |+.+..++.|.++|.++|...+...++..++++++++.+++++.|..|||+|++  .|.  ..++
T Consensus         5 ~~~~~~wl~~~r---P~Tl~aai~Pv~~G~a~A~~~~~~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~   81 (303)
T COG1575           5 TSKTQLWLELAR---PKTLPAAIAPVIVGTALAFWYGKSFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRL   81 (303)
T ss_pred             cHHHHHHHHhcC---ccchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccc
Confidence            356789999865   455568999999999999854433578889999999999999999999999964  565  4456


Q ss_pred             CCCCccccCCCCHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHhccC-Ccc--cCchhHHHHHhHHHHH
Q 019626          172 TRLRPVASGLLTPFQGLSFLGFQLLLG----LGILLQLNNFSRILGASSLLLVFSYPL-MKR--FTFWPQAYLGLTFNWG  244 (338)
Q Consensus       172 t~~RPI~sG~IS~~~A~~~~~~l~~lg----l~l~~~l~~~~~~l~~~~l~~~~~Ys~-lKr--~~~~~~~v~gl~~al~  244 (338)
                      ++++-+.+.+++++.++.....+....    +.++...+|..+.+|+++++.+++|+. .|+  +.+++|+..|+++++.
T Consensus        82 ~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l  161 (303)
T COG1575          82 KQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPL  161 (303)
T ss_pred             cccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHH
Confidence            678899999999999888776655444    334456688888899999999999996 554  5678999999998755


Q ss_pred             -HHHHHHHhcCCCCHHHHHHHHHHHHHHH--------h-cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHH
Q 019626          245 -ALLGWAAVKGSLDLAVVFPMYISGVFWT--------L-DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSG  313 (338)
Q Consensus       245 -~l~g~~a~~g~~~~~~ll~l~~~~~~w~--------~-D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g  313 (338)
                       +..+++.+++++++..++ ..++....+        + |+|+|+++|++|+||++|++.+..+. .+...+..+.++..
T Consensus       162 ~v~g~~yiqt~~~~~~~ll-~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~  240 (303)
T COG1575         162 IVLGAYYIQTGRLSWAILL-PSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFV  240 (303)
T ss_pred             HHHHHHHHhcccchHHHHH-HHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHH
Confidence             455688899999988665 222222211        1 99999999999999999999987764 55555566555554


Q ss_pred             HHhhhhHHHHH
Q 019626          314 YNADIGIYLLL  324 (338)
Q Consensus       314 ~~~~lg~~y~~  324 (338)
                      ......++++.
T Consensus       241 i~~~~~~~~ll  251 (303)
T COG1575         241 ILGLFPVWGLL  251 (303)
T ss_pred             HHHhchHHHHH
Confidence            55555555544

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.93  E-value=5.7e-24  Score=204.56  Aligned_cols=217  Identities=19%  Similarity=0.045  Sum_probs=160.4

Q ss_pred             cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccccc--ccccCCCCC
Q 019626           96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRD--IDNMVERTR  173 (338)
Q Consensus        96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~--iD~~~~rt~  173 (338)
                      +++++.|++.   .||.....+++|+++|.++|...++..++..+++++++++++|+++|.+|||+|++  .|+. ++  
T Consensus         9 ~~~~~~w~~a---~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~--   82 (304)
T PRK07419          9 PSRRKLWLAA---IKPPMYSVAIMPILVGTAWALGETGVFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKN-KF--   82 (304)
T ss_pred             ccHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-cc--
Confidence            4678999887   56778889999999999999754445688889999999999999999999999975  7884 22  


Q ss_pred             CCccccCCCCHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHhccC----CcccCchhHHHHHhHHHHH-
Q 019626          174 LRPVASGLLTPFQGLSFLGFQLLLGLG----ILLQLNNFSRILGASSLLLVFSYPL----MKRFTFWPQAYLGLTFNWG-  244 (338)
Q Consensus       174 ~RPI~sG~IS~~~A~~~~~~l~~lgl~----l~~~l~~~~~~l~~~~l~~~~~Ys~----lKr~~~~~~~v~gl~~al~-  244 (338)
                       ...+++..+++++...+.++.+++++    +++..||..+.+|+++++.+++||.    +|+ .+++|+..+++++.. 
T Consensus        83 -~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g~~~~~~YT~gP~~l~y-~gLGE~~v~l~~G~l~  160 (304)
T PRK07419         83 -HSVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLCCFLGYLYQGPPFRLGY-QGLGEPLCFLAFGPLA  160 (304)
T ss_pred             -cCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhheccCCCcccCC-CCchHHHHHHHHHHHH
Confidence             23446666789988887776655554    4455688888999999999999983    444 457999999887754 


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHH--------h-cHHHHHhcCCceeeEeeCcchHHHHHH-HHHHHHHHHHHHHH
Q 019626          245 ALLGWAAVKGSLDLAVVFPMYISGVFWT--------L-DKEDDLKVGVKSTALRFGDSSKEWTTG-FGIACISSLALSGY  314 (338)
Q Consensus       245 ~l~g~~a~~g~~~~~~ll~l~~~~~~w~--------~-D~e~D~~~G~kTlav~~G~k~a~~l~~-~~~~~i~~l~~~g~  314 (338)
                      +..++++++|.+++..++ ..++..+.+        + |+|+|+++|+||+|+++|+|++.+++. +...+.++.+....
T Consensus       161 v~g~~yv~t~~~~~~~~~-~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~  239 (304)
T PRK07419        161 VAAALYSQTPSWSLIPLA-ASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVL  239 (304)
T ss_pred             HHHHHHHhcCCCCHHHHH-HHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHH
Confidence            455677889999987664 222211111        1 999999999999999999999998874 44444444443333


Q ss_pred             HhhhhHH
Q 019626          315 NADIGIY  321 (338)
Q Consensus       315 ~~~lg~~  321 (338)
                      .+.+.++
T Consensus       240 ~g~~p~~  246 (304)
T PRK07419        240 LGFWPWT  246 (304)
T ss_pred             HhhhHHH
Confidence            3334443

>PLN02922 prenyltransferase

Probab=99.93  E-value=1.7e-23  Score=202.23  Aligned_cols=207  Identities=18%  Similarity=0.052  Sum_probs=149.8

Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccccc--ccccCCCCCC
Q 019626           97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRD--IDNMVERTRL  174 (338)
Q Consensus        97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~--iD~~~~rt~~  174 (338)
                      +++|.|++.+   ||......++|+++|.++|....+..+|..+++++++++++|++.|.+|||+|++  .|+.++.+..
T Consensus        13 ~~~~~w~~a~---Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~   89 (315)
T PLN02922         13 SRATLWWRAI---KLPMYSVALVPLTVGAAAAYLQTGLFDARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV   89 (315)
T ss_pred             cHHHHHHHHh---CcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence            5789999985   5667779999999999999754345688889999999999999999999999964  6775332223


Q ss_pred             CccccCCCCHHHHHHHHHHHHHHHHHHHH---H--hhHHHHHHHHHHHHHHHhccC----CcccCchhHHHHHhHHHHHH
Q 019626          175 RPVASGLLTPFQGLSFLGFQLLLGLGILL---Q--LNNFSRILGASSLLLVFSYPL----MKRFTFWPQAYLGLTFNWGA  245 (338)
Q Consensus       175 RPI~sG~IS~~~A~~~~~~l~~lgl~l~~---~--l~~~~~~l~~~~l~~~~~Ys~----lKr~~~~~~~v~gl~~al~~  245 (338)
                      |++  |  |++++...+.++.++++...+   .  .+|..+++|+++++.+++||.    +| +.+++|+..+++++..+
T Consensus        90 ~~~--~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~gP~pl~-y~gLGE~~v~i~fG~l~  164 (315)
T PLN02922         90 NLV--G--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQCPPFRLS-YKGLGEPLCFAAFGPLA  164 (315)
T ss_pred             Ccc--c--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhcCCcccc-cCcchHHHHHHHHHHHH
Confidence            443  3  999998887777666553221   2  367788899999999999983    33 45689999888876544


Q ss_pred             HH-HHHHhcC----------CCCHHHHHHHHHHHHHHH--------h-cHHHHHhcCCceeeEeeCcchHHHHHH-HHHH
Q 019626          246 LL-GWAAVKG----------SLDLAVVFPMYISGVFWT--------L-DKEDDLKVGVKSTALRFGDSSKEWTTG-FGIA  304 (338)
Q Consensus       246 l~-g~~a~~g----------~~~~~~ll~l~~~~~~w~--------~-D~e~D~~~G~kTlav~~G~k~a~~l~~-~~~~  304 (338)
                      +. .|.+++|          .+++..++ ..++..+++        + |+|+|+++|+||+|+++|+|++.++.. +...
T Consensus       165 v~g~y~~~~~~~~~~~~~~~~~~~~~~l-~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~  243 (315)
T PLN02922        165 TTAFYLALASGAGGSEMAILPLTPTVLS-ASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLL  243 (315)
T ss_pred             HHHHHHHhcccccccccccccccHHHHH-HHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHH
Confidence            44 4667666          23444443 323322222        1 999999999999999999999988864 4444


Q ss_pred             HHHHHHHH
Q 019626          305 CISSLALS  312 (338)
Q Consensus       305 ~i~~l~~~  312 (338)
                      +.+..+..
T Consensus       244 ~y~~~i~~  251 (315)
T PLN02922        244 LYSLLAAL  251 (315)
T ss_pred             HHHHHHHH
Confidence            44444433

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.92  E-value=1.6e-23  Score=199.42  Aligned_cols=197  Identities=18%  Similarity=0.118  Sum_probs=135.2

Q ss_pred             HHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHH----HhhhcccccccccCCCCCCCccccC
Q 019626          105 LARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGC----TVNDLLDRDIDNMVERTRLRPVASG  180 (338)
Q Consensus       105 L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~----~lND~~D~~iD~~~~rt~~RPI~sG  180 (338)
                      +.|+.||+.|....+|+.+|+.+|   ++.++| .+++.   +++++...|    .+|||+|+|.|++|+|+..|   .|
T Consensus         4 ~~~~~rP~~wi~~a~pf~~g~~la---~~~~~~-~~l~~---~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~---~g   73 (282)
T PRK13105          4 LLLSSRPISWINTAYPFAAAYLLA---GGEIDW-LFVVG---TVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV---EG   73 (282)
T ss_pred             HHHhcccHHHhccHHHHHHHHHHH---CCCCCh-HHHHH---HHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC---CC
Confidence            345688999999999999988888   234555 33333   334444444    55999999999999997655   48


Q ss_pred             CCCHHHHHHHHH----HHHH-HHHHHHHHhhHHHHHHHHHHHHHHHhccCCc-c--cCchhHH-HHHhHHHHHHHHHHHH
Q 019626          181 LLTPFQGLSFLG----FQLL-LGLGILLQLNNFSRILGASSLLLVFSYPLMK-R--FTFWPQA-YLGLTFNWGALLGWAA  251 (338)
Q Consensus       181 ~IS~~~A~~~~~----~l~~-lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~lK-r--~~~~~~~-v~gl~~al~~l~g~~a  251 (338)
                      .++++|+.....    +..+ .++.+....++.++.++.++++.++.||..| |  +.++++. ..+..+..+.+.|...
T Consensus        74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~  153 (282)
T PRK13105         74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYGLVL  153 (282)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            899999843333    3233 3444444458888889999999999999644 2  2334444 2333333445666555


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHH
Q 019626          252 VKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALS  312 (338)
Q Consensus       252 ~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~  312 (338)
                      .++.+++..++ +.....+|..         |+|+||++|+||+|+++|+|++.+++ .++++++++....
T Consensus       154 ~~~~~~~~~~l-~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~  223 (282)
T PRK13105        154 AGAPFTAALWA-VLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLAL  223 (282)
T ss_pred             hhccccHHHHH-HHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667766554 4445555543         99999999999999999999999886 5666666665543

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.92  E-value=2.3e-23  Score=199.57  Aligned_cols=173  Identities=18%  Similarity=0.154  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCc
Q 019626           97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRP  176 (338)
Q Consensus        97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RP  176 (338)
                      +++++|+|++|++++..+.+...|.+++.....    ...+...++.+++.+++++++|++||++|+|+|++|+||++||
T Consensus         9 ~~l~~~l~L~RP~~w~~nll~~~~~~~a~~~~~----~~~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RP   84 (295)
T PRK12324          9 NLLAGYLKLLRPKQWIKNLFVFAAPIFAGNLLN----PGALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRP   84 (295)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHhhcc----cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCC
Confidence            579999999999998888777777766644321    1134455667777788899999999999999999999999999


Q ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccC-CcccCchhHHHHHhHHHHHHHHHHHHhcCC
Q 019626          177 VASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYPL-MKRFTFWPQAYLGLTFNWGALLGWAAVKGS  255 (338)
Q Consensus       177 I~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys~-lKr~~~~~~~v~gl~~al~~l~g~~a~~g~  255 (338)
                      +++|++|+++|+.++.++.++|+++++.+|+.++.+.+..+++.+.||. +||++.++.+..+.++++.++.|+.+.+.+
T Consensus        85 lasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~~~~~~~~~~Ys~~lK~~~~~d~l~va~~~~lr~~~G~~a~~~~  164 (295)
T PRK12324         85 IASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVLLVYLVLNLAYSFKLKHQPVLDVFCIASGFVLRAIAGGVAIGVP  164 (295)
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchhhHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999998999887777777788899997 899999999999999999999999887765


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 019626          256 LDLAVVFPMYISGVFWTL  273 (338)
Q Consensus       256 ~~~~~ll~l~~~~~~w~~  273 (338)
                      ++...++..+....+|..
T Consensus       165 ~s~wll~~~~~~~lfla~  182 (295)
T PRK12324        165 LSPWLLLCTALLSLFLAA  182 (295)
T ss_pred             ccHHHHHHHHHHHHHHHH
Confidence            554433222244566665

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.92  E-value=2.9e-23  Score=198.19  Aligned_cols=198  Identities=20%  Similarity=0.110  Sum_probs=146.9

Q ss_pred             ccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccccc--ccccCCCCCCCccccCCCCHHH
Q 019626          109 DKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRD--IDNMVERTRLRPVASGLLTPFQ  186 (338)
Q Consensus       109 ~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~--iD~~~~rt~~RPI~sG~IS~~~  186 (338)
                      .||.....+++|+++|.++|...++..|+..+++++++++++|+++|.+|||+|++  .|+.+..+    ..++..++++
T Consensus         6 ~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~----~~~~~~~~~~   81 (285)
T TIGR02235         6 IKPPLYSVAVMPILVGTAVAWGQGGVFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHS----IVNLTGSRSL   81 (285)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCC----cccccCcHHH
Confidence            57888889999999999999754445688889999999999999999999999965  58743222    2233345788


Q ss_pred             HHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHhccC----CcccCchhHHHHHhHHHH-HHHHHHHHhcCCCC
Q 019626          187 GLSFLGFQLLLGLG----ILLQLNNFSRILGASSLLLVFSYPL----MKRFTFWPQAYLGLTFNW-GALLGWAAVKGSLD  257 (338)
Q Consensus       187 A~~~~~~l~~lgl~----l~~~l~~~~~~l~~~~l~~~~~Ys~----lKr~~~~~~~v~gl~~al-~~l~g~~a~~g~~~  257 (338)
                      +...+.++.+++++    +.+..+|..+.+|+++++.+++||.    +|+ .+++|+..+++++. .+..+++.++|.++
T Consensus        82 v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~~~~Yt~gP~~l~y-~gLGE~~v~l~~G~l~v~g~~yvqt~~~~  160 (285)
T TIGR02235        82 VFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFLGYLYQGPPFRLGY-QGLGEPICWLCFGPLAIAAALYAQSQSFS  160 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCcccCC-CCccHHHHHHHHHHHHHHHHHHHhCCcCc
Confidence            77776666555544    4455678888899999999999983    444 56799999988774 44556888899999


Q ss_pred             HHHHHHHHHHHHHHH--------h-cHHHHHhcCCceeeEeeCcchHHHHHH-HHHHHHHHHHHH
Q 019626          258 LAVVFPMYISGVFWT--------L-DKEDDLKVGVKSTALRFGDSSKEWTTG-FGIACISSLALS  312 (338)
Q Consensus       258 ~~~ll~l~~~~~~w~--------~-D~e~D~~~G~kTlav~~G~k~a~~l~~-~~~~~i~~l~~~  312 (338)
                      +..++ ..++..+.+        + |+|+|+++|+||+|+++|+|++.++.. +...+.++.+..
T Consensus       161 ~~~~l-~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~  224 (285)
T TIGR02235       161 LIPWK-ASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIA  224 (285)
T ss_pred             HHHHH-HHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHH
Confidence            88765 222222221        1 999999999999999999999988864 444444444333

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.92  E-value=8.2e-23  Score=194.75  Aligned_cols=208  Identities=23%  Similarity=0.225  Sum_probs=135.5

Q ss_pred             cHHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHH--HHHHHHHhhhcccccccccCCCCC
Q 019626           96 PRQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALL--LRGAGCTVNDLLDRDIDNMVERTR  173 (338)
Q Consensus        96 ~~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l--~~~a~~~lND~~D~~iD~~~~rt~  173 (338)
                      +.++|.|+++   .||+.+...+.|+++|.++|...+. ..+...++++++.++  .+...|.+|||+|+|+|+.|+|++
T Consensus         5 ~~~~~~l~~l---~RP~~~~~~~~p~l~G~~lA~~~~~-~~~~~~~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk~   80 (282)
T PRK12875          5 GDRLRYLLVL---SRPRFWLYLAGPVVVGVAYAADSVA-DLFSPAAVALFAYFLFPANVFLYGVNDVFDADTDELNPKKD   80 (282)
T ss_pred             HHHHHHHHHH---hCccchHHHHHHHHHHHHHHhccCc-ccccHHHHHHHHHHHHHHHHHHhcchhhhhhhccccCCCcc
Confidence            3567777665   7899999999999999999975321 112223333444333  122334589999999999999987


Q ss_pred             -CCccc-cCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc---C-CcccCchhHHHHHhHHHHHHHH
Q 019626          174 -LRPVA-SGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYP---L-MKRFTFWPQAYLGLTFNWGALL  247 (338)
Q Consensus       174 -~RPI~-sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys---~-lKr~~~~~~~v~gl~~al~~l~  247 (338)
                       .||++ +|+.....+   ......+++.+....++....+.+..++..+.||   . +|+++..+..+.|+ +.++.+.
T Consensus        81 ~~r~~~~s~~~~~~~~---~~l~~~l~l~l~~~~~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~-~~~~~~~  156 (282)
T PRK12875         81 REREVRYRGDRRVLVA---VALSGALALAFLLVLPPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGL-YILPGVA  156 (282)
T ss_pred             CCCCccHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHH-HHHHHHH
Confidence             57776 332222222   2223344555555555544434445568889998   2 66665433333344 3577788


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHh---------cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHH
Q 019626          248 GWAAVKGSLDLAVVFPMYISGVFWTL---------DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGY  314 (338)
Q Consensus       248 g~~a~~g~~~~~~ll~l~~~~~~w~~---------D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~  314 (338)
                      +|++++|++++..++   +..++|+.         |+|+|+++|+||+|+++|+|++.+++ .+++++.++....+.
T Consensus       157 ~y~~~tg~~~~~~l~---~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~~  230 (282)
T PRK12875        157 AYALVSGSLPPLLAV---AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVDL  230 (282)
T ss_pred             HHHHHcCCCcHHHHH---HHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            899999988765433   23344443         99999999999999999999988665 567777776666543

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.91  E-value=8.3e-23  Score=194.10  Aligned_cols=221  Identities=18%  Similarity=0.162  Sum_probs=148.2

Q ss_pred             HHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCcc
Q 019626           98 QARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPV  177 (338)
Q Consensus        98 ~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI  177 (338)
                      -+++++++.|..+-.   ........+.....    ..++......++++++.+.++|++|||+|+|+|++|+|  +||.
T Consensus         3 ~~~~~~~~~~~~~~~---~a~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~--~R~~   73 (285)
T PRK12872          3 LLFAFLKLFRYGNLL---IAALGQSLVYMASL----LLGLPISWLLLLITFLIAAAVYIINYLTDLEEDIINKP--ERVV   73 (285)
T ss_pred             HHHHHHHHHHHccHH---HHHHHHHHHHHHHH----HHcChhHHHHHHHHHHHHHHHHHhhhhcCCchhhcCCC--chHH
Confidence            478899988877542   22222222211100    01222345677788899999999999999999999988  7888


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhccC-----CcccCchhHHHHHhHHHHH-HHHHHH
Q 019626          178 ASGLLTPFQGLSFLGFQLLLGLGIL-LQLNNFSRILGASSLLLVFSYPL-----MKRFTFWPQAYLGLTFNWG-ALLGWA  250 (338)
Q Consensus       178 ~sG~IS~~~A~~~~~~l~~lgl~l~-~~l~~~~~~l~~~~l~~~~~Ys~-----lKr~~~~~~~v~gl~~al~-~l~g~~  250 (338)
                      ++++...+.+..+..+...+|+.+. ...|+..+.+++++.+.+++|+.     +||.+.+++++.|...+.. ++.+++
T Consensus        74 ~s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~  153 (285)
T PRK12872         74 FSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVY  153 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence            8554444444444444444444443 23488888888888888999984     5677778899988876644 455666


Q ss_pred             HhcCCCCHHHHH---HHHHHHHHHHh-----cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHHhhhhHH
Q 019626          251 AVKGSLDLAVVF---PMYISGVFWTL-----DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYNADIGIY  321 (338)
Q Consensus       251 a~~g~~~~~~ll---~l~~~~~~w~~-----D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~lg~~  321 (338)
                      +.++.++...++   .++...+.|+.     |+|+|+++|+||+|+++|+|++.++. .+.++.++.+++....+..++.
T Consensus       154 ~~~~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (285)
T PRK12872        154 YYQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLL  233 (285)
T ss_pred             hcccccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Confidence            666656655443   23344555554     99999999999999999999888776 5677777777777666555555


Q ss_pred             HHHHHH
Q 019626          322 LLLVVF  327 (338)
Q Consensus       322 y~~~~~  327 (338)
                      ++..+.
T Consensus       234 ~~~~~~  239 (285)
T PRK12872        234 LLVLLL  239 (285)
T ss_pred             HHHHHH
Confidence            554433

>PLN02878 homogentisate phytyltransferase

Probab=99.90  E-value=2e-22  Score=190.26  Aligned_cols=176  Identities=18%  Similarity=0.235  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-H
Q 019626          138 KMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGAS-S  216 (338)
Q Consensus       138 ~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~-~  216 (338)
                      ...+...+++++++.....+|||+|+|+||+|||  +||||||++|+++|+.+..++.++|+++++.+|++.+...+. +
T Consensus        23 ~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP--~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~~g~~~l~~al~~~  100 (280)
T PLN02878         23 TGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKP--YLPLASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVS  100 (280)
T ss_pred             HHHHHHHHHHHhhhhheechhhhhhhcccccCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence            3455677888899999999999999999999999  899999999999999999999999999999999876555544 5


Q ss_pred             HHHHHhccC-CcccCchhHHH-HHhHH----HHHHHHHHH-----HhcC---CCCHHHHH-HHHHHHHHHHh-------c
Q 019626          217 LLLVFSYPL-MKRFTFWPQAY-LGLTF----NWGALLGWA-----AVKG---SLDLAVVF-PMYISGVFWTL-------D  274 (338)
Q Consensus       217 l~~~~~Ys~-lKr~~~~~~~v-~gl~~----al~~l~g~~-----a~~g---~~~~~~ll-~l~~~~~~w~~-------D  274 (338)
                      +++++.|+. +|......+.+ .+.|+    +...-+||+     .+.|   .++...++ .++...+.+..       |
T Consensus       101 ~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~D  180 (280)
T PLN02878        101 FVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPD  180 (280)
T ss_pred             HHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhCcC
Confidence            588899983 32221111111 22222    111112332     1113   22323332 12222223322       9


Q ss_pred             HHHHHhcCCceeeEeeCcchHHHHH-HHHHHHHHHHHHHHHH
Q 019626          275 KEDDLKVGVKSTALRFGDSSKEWTT-GFGIACISSLALSGYN  315 (338)
Q Consensus       275 ~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i~~l~~~g~~  315 (338)
                      +|+|++.|+||+|+++|++++.+++ .+..++.+...+.|..
T Consensus       181 ieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~  222 (280)
T PLN02878        181 VEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGAS  222 (280)
T ss_pred             chhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998886 3555555544444443

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.90  E-value=3.5e-22  Score=190.01  Aligned_cols=212  Identities=15%  Similarity=0.076  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHhh----cCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCC
Q 019626           97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMA----APRGHFPDFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERT  172 (338)
Q Consensus        97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA----~~~g~~~~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt  172 (338)
                      ++++-|.+=+=+..|++....  +..+...+-    .....+......++.+++.++..+++|++|||+|+|+|++|+| 
T Consensus         3 k~~~iy~~e~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P-   79 (299)
T PRK13592          3 KRLNVYLKEMYPLLPRLILSL--TLFFEIYMITLLSNHISSFRIGIQEFVGVFTVFGFWMILRIADDFKDYETDRRLFP-   79 (299)
T ss_pred             hhHHHHHHHhccchhhhHHHH--HHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCC-
Confidence            456677665444455433222  222222211    1112223344566677778888999999999999999999998 


Q ss_pred             CCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-----cC-CcccCchhHHHHHhHHHHHHH
Q 019626          173 RLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSY-----PL-MKRFTFWPQAYLGLTFNWGAL  246 (338)
Q Consensus       173 ~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Y-----s~-lKr~~~~~~~v~gl~~al~~l  246 (338)
                       +||+|||++|+++|..++.++.++++.+....     ...+...+..+.|     +. +||....+++..+...+.+++
T Consensus        80 -~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~i~~~~i~~lY~~lm~a~~~K~~~l~gNl~Va~ltg~~f~  153 (299)
T PRK13592         80 -HRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNNVGWFLFLYIYGTLMSFWFFKRDKIQNSLPLALVTHNPVM  153 (299)
T ss_pred             -CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHcccCCCcchhhhhhccchhh
Confidence             89999999999999999999877776665443     2233344455666     64 999999999998887776664


Q ss_pred             HH---------HHHhcCCCCHHH--HH---HHHHHHHHHHh-----cHHHHHhcCCceeeEeeCcchHHHHH-HHHHHHH
Q 019626          247 LG---------WAAVKGSLDLAV--VF---PMYISGVFWTL-----DKEDDLKVGVKSTALRFGDSSKEWTT-GFGIACI  306 (338)
Q Consensus       247 ~g---------~~a~~g~~~~~~--ll---~l~~~~~~w~~-----D~e~D~~~G~kTlav~~G~k~a~~l~-~~~~~~i  306 (338)
                      .|         ..+ .|......  ++   ..|+...-+.+     | |||++ |.+|+|+++|.|++.+++ ++.++.+
T Consensus       154 ~g~~~~~~~fg~~~-~g~~~~~~~~~~l~l~afl~~l~rEI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v  230 (299)
T PRK13592        154 MILNLYTISFVCYK-YNLPLLSLPTVLLAFTMYFPSLIWEVCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDI  230 (299)
T ss_pred             hchhhhhhhhhhhh-cccchhhHHHHHHHHHHHHHHHHHHHHHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHH
Confidence            43         111 12211111  22   12223333343     8 78885 599999999999988876 6788888


Q ss_pred             HHHHHHHH-HhhhhH
Q 019626          307 SSLALSGY-NADIGI  320 (338)
Q Consensus       307 ~~l~~~g~-~~~lg~  320 (338)
                      +.+.++.+ .+.+|+
T Consensus       231 ~~s~lp~~~~g~~g~  245 (299)
T PRK13592        231 LTNFALLWNISHVGV  245 (299)
T ss_pred             HHhhHHHHHhhhhHH
Confidence            88888988 777777

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.86  E-value=1.1e-19  Score=174.14  Aligned_cols=166  Identities=17%  Similarity=0.102  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Q 019626          145 CGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNNFSRILGASSLLLVFSYP  224 (338)
Q Consensus       145 l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~~~~~l~~~~l~~~~~Ys  224 (338)
                      +.+.+...++|++|||+|+|+|+.|++  +||++    +++.++.++.+..++|+.+++..|+.  .+++++.+.+++|+
T Consensus        65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P--~r~~~----s~~~a~~ls~la~llGl~La~~~g~~--ll~ll~~l~g~lYS  136 (307)
T PRK13591         65 IAGGLIIYSVYTLDRALDSEEDAVNRS--ELIGS----NKKIGLLVSLLAFLLGTYILAMDGML--LLAFLPFITGYLYS  136 (307)
T ss_pred             HHHHHHHHHHHHHhhhccchhhhccCc--ccccc----CHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHhc
Confidence            334566899999999999999999987  89886    89999999999999999999999974  36778888899999


Q ss_pred             C----------CcccCchhHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------h-cHHHHHhcCCceee
Q 019626          225 L----------MKRFTFWPQAYLGLTFNWGALLGWAAVKGSLDLAVVFPMYISGVFWT------L-DKEDDLKVGVKSTA  287 (338)
Q Consensus       225 ~----------lKr~~~~~~~v~gl~~al~~l~g~~a~~g~~~~~~ll~l~~~~~~w~------~-D~e~D~~~G~kTla  287 (338)
                      .          .|+.+++++++.|+..+.....+....++.+-....+.++....++.      + |+|+|+++|+||+|
T Consensus       137 ~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~~~~~~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~kTLP  216 (307)
T PRK13591        137 KGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSYCGSLIPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIKTLP  216 (307)
T ss_pred             CCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCeeEE
Confidence            4          34566788999988877644322111122211111111111111111      1 99999999999999


Q ss_pred             EeeCcchHHHHH-HHHHHHHHHHHHHHHHhhh
Q 019626          288 LRFGDSSKEWTT-GFGIACISSLALSGYNADI  318 (338)
Q Consensus       288 v~~G~k~a~~l~-~~~~~~i~~l~~~g~~~~l  318 (338)
                      +++|++++.++. ...+++.++..+....+.+
T Consensus       217 V~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l  248 (307)
T PRK13591        217 VSLGEQKTRNLLLGIHLFSHLVLGIALIFGVI  248 (307)
T ss_pred             EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999988876 4455444444444343333

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.35  E-value=3.3e-13  Score=123.38  Aligned_cols=197  Identities=19%  Similarity=0.164  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHhhcCCCCCC--cHHHHHHHHHHHHHHHHHHHHhhhccc--ccccccCCCC
Q 019626           97 RQARAYAKLARLDKPIGTWLLAWPCMWSITMAAPRGHFP--DFKMMALFGCGALLLRGAGCTVNDLLD--RDIDNMVERT  172 (338)
Q Consensus        97 ~~l~~yl~L~Rl~rp~~~~l~~iP~~~g~~lA~~~g~~~--~l~~~ll~~l~~~l~~~a~~~lND~~D--~~iD~~~~rt  172 (338)
                      +|.+.|+-.   .||+....++.|+..|.++|....+..  .+..+.++.++.+.+++++|.+|.|+|  +++|++.  .
T Consensus        59 ~k~~sylla---lrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl~a~avlavh~agnlvntyfdf~kgid~kk--a  133 (359)
T KOG4581|consen   59 MKCASYLLA---LRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKK--A  133 (359)
T ss_pred             HHHHHHHhh---hcccccccccchHhhhhHHHHhhccccchhHHHHHHHHhhheeeecccchhhhhhhhhhcccccc--c
Confidence            477888765   467778899999999999997432222  344556677777889999999999999  4788864  3


Q ss_pred             CCCccccCCCCHHHHHHHHHHHHHHHHHHH---HHhhHHHH-HHH---HHHHHHHHhccC---CcccCchhHHH-HHhHH
Q 019626          173 RLRPVASGLLTPFQGLSFLGFQLLLGLGIL---LQLNNFSR-ILG---ASSLLLVFSYPL---MKRFTFWPQAY-LGLTF  241 (338)
Q Consensus       173 ~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~---~~l~~~~~-~l~---~~~l~~~~~Ys~---lKr~~~~~~~v-~gl~~  241 (338)
                      .+|.++...+.+.++..++.++..+|+..+   +.+++.-+ -++   ..++--.+.|+-   .|... ++.++ +-..+
T Consensus       134 ddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytggigfkyia-lgdliili~fg  212 (359)
T KOG4581|consen  134 DDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGGIGFKYIA-LGDLIILILFG  212 (359)
T ss_pred             cchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecccceEEEe-ccCEEEEEeec
Confidence            489999999999999999999888776643   33444322 112   223334678883   45443 33333 33345


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--------h-cHHHHHhcCCceeeEeeCcchHHHHHH
Q 019626          242 NWGALLGWAAVKGSLDLAVVFPMYISGVFWT--------L-DKEDDLKVGVKSTALRFGDSSKEWTTG  300 (338)
Q Consensus       242 al~~l~g~~a~~g~~~~~~ll~l~~~~~~w~--------~-D~e~D~~~G~kTlav~~G~k~a~~l~~  300 (338)
                      .+.++++++.++|++++..+. ..++..+-+        . |.|.||.+|+-|+++.+|...+..++.
T Consensus       213 piavlfaf~~q~g~l~~~~l~-yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~  279 (359)
T KOG4581|consen  213 PIAVLFAFAIQTGHLAIFPLG-YAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYA  279 (359)
T ss_pred             hHHHHHHHHHhcCceeEEeeh-heeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHH
Confidence            677889999999998765543 112211211        1 999999999999999999988877764

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=92.77  E-value=1.5  Score=42.23  Aligned_cols=60  Identities=13%  Similarity=0.004  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhhH
Q 019626          144 GCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLNN  207 (338)
Q Consensus       144 ~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~~  207 (338)
                      .++..+...+...+||+-|.|-||++.+   |.+|. ++.++.+..++.++.+++.++....++
T Consensus       166 ~~~~~~~~~a~~ii~~irDie~Dr~~G~---~Tlpv-~lG~~~a~~~~~~l~~~a~~~~~~~~~  225 (282)
T PRK13105        166 LAAFFLWGMASHAFGAVQDVVADREAGI---ASIAT-VLGARRTVRLAVGLYAAAAVLMLALPW  225 (282)
T ss_pred             HHHHHHHHHHHHHHHhCcchHhHHHcCC---ccchH-HhcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344455778889999999999998643   33332 566788888877777777665554443

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=91.70  E-value=2.7  Score=40.43  Aligned_cols=59  Identities=17%  Similarity=0.156  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 019626          144 GCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLGLGILLQLN  206 (338)
Q Consensus       144 ~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lgl~l~~~l~  206 (338)
                      +++..+...+-..+||+.|+|-|++..+   |.++. ++.++.+..+..++.+++..+....+
T Consensus       171 ~~a~~l~~~~~~~in~i~Die~D~~aGi---~Tlav-~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        171 VAGGWLWAMGMHTFSAIPDIEPDRAAGI---RTTAT-VLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHcCC---ccchh-hccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            3444577777799999999999997643   33332 55566677666666665555544444

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=91.55  E-value=2.6  Score=39.94  Aligned_cols=37  Identities=19%  Similarity=0.031  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626          144 GCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL  181 (338)
Q Consensus       144 ~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~  181 (338)
                      .+..++.....+++||.-|+|-|+++.++ +=|..-|+
T Consensus       167 ~~~~fl~~~~~~~~~d~~D~e~D~~~G~~-Tlpv~lG~  203 (285)
T PRK12872        167 AVFIFLKSFIREIVFDIKDIEGDRKSGLK-TLPIVLGK  203 (285)
T ss_pred             HHHHHHHHHHHHHHHhcccchhHHHcCCc-ccchhcch
Confidence            34444556777789999999999987552 45555555

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=90.79  E-value=1.8  Score=41.18  Aligned_cols=38  Identities=16%  Similarity=0.147  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626          143 FGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL  181 (338)
Q Consensus       143 ~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~  181 (338)
                      ..+..++.+.+-..+||..|+|-|++..++ .=|+.-|+
T Consensus       163 l~~~~~~w~~~~~~i~~~~D~e~D~~~G~~-tlpv~~G~  200 (282)
T TIGR01475       163 LGIGVGFWIAGFDLIYAIQDYEFDRKNGLH-SIPARFGI  200 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhHHHcCCC-chHHHhch
Confidence            445556677788899999999999987653 56776773

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=89.71  E-value=4.2  Score=39.61  Aligned_cols=30  Identities=20%  Similarity=0.009  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHhhhcccccccccCCC
Q 019626          142 LFGCGALLLRGAGCTVNDLLDRDIDNMVER  171 (338)
Q Consensus       142 l~~l~~~l~~~a~~~lND~~D~~iD~~~~r  171 (338)
                      +..+.+.+..+..+..|+..|.|.|+++.|
T Consensus       180 l~slp~gil~~~Il~aNNirDie~D~~~gk  209 (303)
T COG1575         180 LPSLPVGILIANILLANNLRDIEEDIRNGK  209 (303)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhHHhcCC
Confidence            344555566778888999999999999876

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=89.52  E-value=2.6  Score=40.28  Aligned_cols=40  Identities=15%  Similarity=0.047  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCC
Q 019626          142 LFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLL  182 (338)
Q Consensus       142 l~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~I  182 (338)
                      +..+..++.+.+-..+|++.|+|-|+++.++ .=|+.-|+-
T Consensus       169 ~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~-tl~v~~G~~  208 (285)
T PRK12847        169 LLYIGCIFWTIGYDTIYAYQDKKDDLKIGVK-STAIYFGNK  208 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHhhHHHcCCc-hhHHHhccc
Confidence            4455566777888899999999999987653 556666653

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=89.32  E-value=4.3  Score=38.37  Aligned_cols=36  Identities=17%  Similarity=0.116  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626          145 CGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL  181 (338)
Q Consensus       145 l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~  181 (338)
                      +..++.+.+-+..||+.|+|-|++..++ .=|..-|+
T Consensus       162 ~~~~~~~~~~~~~~~~~D~e~D~~~G~~-Tl~v~~G~  197 (279)
T PRK12884        162 AMAFLMTLGREIMKDIEDVEGDRLRGAR-TLAILYGE  197 (279)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHcCCe-eechHhcH
Confidence            4445666777899999999999987542 34544444

>PRK13591 ubiA prenyltransferase; Provisional

Probab=89.21  E-value=2.3  Score=41.42  Aligned_cols=25  Identities=28%  Similarity=0.270  Sum_probs=19.0

Q ss_pred             HhhhcccccccccCCCCCCCccccCC
Q 019626          156 TVNDLLDRDIDNMVERTRLRPVASGL  181 (338)
Q Consensus       156 ~lND~~D~~iD~~~~rt~~RPI~sG~  181 (338)
                      .+||+.|.|-|+++.++ +=|+.=|+
T Consensus       197 iindirDiEGDr~~G~k-TLPV~lG~  221 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIK-TLPVSLGE  221 (307)
T ss_pred             HHHHhhhhHhHHHcCCe-eEEEEECH
Confidence            68999999999987652 45665554

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=88.96  E-value=6.1  Score=38.44  Aligned_cols=44  Identities=14%  Similarity=0.014  Sum_probs=28.2

Q ss_pred             HHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHH
Q 019626          149 LLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLL  196 (338)
Q Consensus       149 l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~  196 (338)
                      +........||+-|+|.|+++.|. +=|.   ++.++.+..+...+.+
T Consensus       185 ll~~~IL~~Nn~rD~e~D~~~Gk~-TL~v---~lG~~~a~~ly~~l~~  228 (304)
T PRK07419        185 LATSLILFCSHFHQVEDDLAAGKR-SPIV---RLGTKRGAQLLPWIVG  228 (304)
T ss_pred             HHHHHHHHHcCCcchhhHHHcCCc-ceee---eechHhHHHHHHHHHH
Confidence            456777889999999999998652 3344   3444555444443333

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=88.78  E-value=5.6  Score=37.95  Aligned_cols=52  Identities=21%  Similarity=0.080  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHH
Q 019626          143 FGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLG  198 (338)
Q Consensus       143 ~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lg  198 (338)
                      ..+...+........||+.|+|.|+++.++ +=|.   ++.++.+..+...+..++
T Consensus       173 ~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~-Tl~v---~lG~~~a~~~~~~l~~~~  224 (293)
T PRK06080        173 PALPCGLLIGAVLLANNIRDIETDRENGKN-TLAV---RLGDKNARRLHAALLALA  224 (293)
T ss_pred             HHHHHHHHHHHHHHhcCCCcchhHHHcCCe-eEEe---eECcHhHHHHHHHHHHHH
Confidence            344445667778899999999999987552 3344   333444444444433333

>PLN02922 prenyltransferase

Probab=88.46  E-value=4.7  Score=39.40  Aligned_cols=46  Identities=17%  Similarity=0.058  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHH
Q 019626          147 ALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLL  196 (338)
Q Consensus       147 ~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~  196 (338)
                      ..+........||+.|+|.|+++.|. +=|.   ++.++.+..+...+..
T Consensus       197 ~gll~~~iL~~Nn~rD~e~D~~~Gk~-TL~v---~lG~~~a~~l~~~l~~  242 (315)
T PLN02922        197 VGLTTTLILFCSHFHQIDGDRAVGKM-SPLV---RLGTEKGSRVVRWAVL  242 (315)
T ss_pred             HHHHHHHHHHHccCcchhhHHHcCcc-ceee---EEChHHHHHHHHHHHH
Confidence            33556677889999999999998662 3344   3445555544444333

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=88.31  E-value=5.7  Score=38.42  Aligned_cols=39  Identities=18%  Similarity=0.059  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCC
Q 019626          143 FGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLL  182 (338)
Q Consensus       143 ~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~I  182 (338)
                      ..+..++.+..-...||+.|+|-|+++.++ .=|+.-|+-
T Consensus       180 l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~-Tlpv~~G~~  218 (297)
T PRK12871        180 YMVFFYPWTMAHLGLNDFIDLENDRARGMK-SIAVLYGMK  218 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHcCCe-eeeeeechH
Confidence            445566778888999999999999987653 567766653

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=87.96  E-value=2.6  Score=41.13  Aligned_cols=52  Identities=13%  Similarity=0.070  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHH
Q 019626          143 FGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLG  198 (338)
Q Consensus       143 ~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lg  198 (338)
                      ..+...+..+.....||+.|+|.|+++.|. +=|.   ++.++.+..+..++..++
T Consensus       194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~-TL~v---~lG~~~a~~l~~~l~~~a  245 (317)
T PRK13387        194 ISLPIIFTIANIMLANNLRDLDEDIKNHRY-TLVY---YIGREKGVVLFAILFYAS  245 (317)
T ss_pred             HHHHHHHHHHHHHHhcCCccchhHHHcCCe-eeee---eEcHHhHHHHHHHHHHHH
Confidence            344445666777899999999999998652 3343   444555555544444443

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=86.33  E-value=11  Score=36.33  Aligned_cols=48  Identities=10%  Similarity=-0.067  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHH
Q 019626          147 ALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLG  198 (338)
Q Consensus       147 ~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lg  198 (338)
                      ..+...+....||.-|+|.|+++.|. +=|.   ++.++.+..+...+..++
T Consensus       170 ~gl~~~~iL~~Nn~rD~e~D~~~Gk~-TL~v---~lG~~~a~~l~~~l~~~~  217 (285)
T TIGR02235       170 VGLATTLILFCSHFHQVEDDLAHGKR-SPVV---RLGTKLAAKIVPWVISLS  217 (285)
T ss_pred             HHHHHHHHHHhcCCccchhHHHcCCc-ceeh---eecHHhHHHHHHHHHHHH
Confidence            33566788889999999999988652 3333   444555555544444433

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=85.98  E-value=7.8  Score=37.67  Aligned_cols=32  Identities=25%  Similarity=0.132  Sum_probs=23.0

Q ss_pred             HHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626          149 LLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL  181 (338)
Q Consensus       149 l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~  181 (338)
                      +...+...+||+.|+|-|++..++ .=|+.-|+
T Consensus       200 l~~~~~~~~~d~~D~e~D~~aG~~-Tlpv~~G~  231 (314)
T PRK07566        200 LGAHGIMTLNDFKSVEGDRQLGLR-SLPVVFGE  231 (314)
T ss_pred             HHHHHHHHHHHHHHhHhHHHcCCc-ccceeEcH
Confidence            445666899999999999987542 45665554

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=85.04  E-value=9.3  Score=36.46  Aligned_cols=40  Identities=15%  Similarity=0.022  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCCCC
Q 019626          143 FGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLT  183 (338)
Q Consensus       143 ~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS  183 (338)
                      .+++.++.+.+-..+|++.|+|-|++...+ +=|+.-|+-.
T Consensus       165 l~~~~~lw~~~~~~~~a~~D~e~D~~~G~~-tlpv~~G~~~  204 (281)
T TIGR01474       165 LYLANILWTLGYDTIYAMQDKEDDIKIGVK-STALRFGDNT  204 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhHHHcCCC-cccHHhhhhh
Confidence            456667778888899999999999986542 5666667533

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PLN00012 chlorophyll synthetase; Provisional

Probab=84.79  E-value=13  Score=37.26  Aligned_cols=34  Identities=24%  Similarity=0.136  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626          147 ALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL  181 (338)
Q Consensus       147 ~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~  181 (338)
                      .++...+-...||+-|+|-|++...+ .=|+.-|+
T Consensus       261 ~~l~~lai~ivnd~~Die~Dr~aG~~-TLpV~~G~  294 (375)
T PLN00012        261 YSIAGLGIAIVNDFKSIEGDRALGLQ-SLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHHHhhhcchhhHHHcCCc-ccceeech
Confidence            34566778889999999999987432 45665665

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=83.78  E-value=35  Score=32.86  Aligned_cols=38  Identities=16%  Similarity=0.113  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626          143 FGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL  181 (338)
Q Consensus       143 ~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~  181 (338)
                      ..+..++.+.+-..+|++.|+|-|++...+ .=|+.-|+
T Consensus       172 l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~-slpv~~G~  209 (291)
T PRK12874        172 LALGVMFWVAGFDLLYSLQDMEFDKKRGLH-SIPSKFGE  209 (291)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHcCCC-cccHHhhh
Confidence            345556778888899999999999876542 45666665

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=83.73  E-value=13  Score=35.87  Aligned_cols=37  Identities=19%  Similarity=0.045  Sum_probs=25.8

Q ss_pred             HHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHH
Q 019626          149 LLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLS  189 (338)
Q Consensus       149 l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~  189 (338)
                      +........||.-|+|.|+++.+   |.++. ++.++.+..
T Consensus       182 l~~~~il~~n~~~D~e~D~~~G~---~Tlav-~lG~~~a~~  218 (296)
T PRK05951        182 LLMALVLLSNNLRDIEDDERKGI---PTLAV-IFGRRGAAL  218 (296)
T ss_pred             HHHHHHHHHCCCccchhHHHCCC---eeeee-eEcHhhHHH
Confidence            44567788999999999998765   33333 555666633

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=81.89  E-value=13  Score=35.57  Aligned_cols=44  Identities=18%  Similarity=0.231  Sum_probs=30.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626          136 DFKMMALFGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL  181 (338)
Q Consensus       136 ~l~~~ll~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~  181 (338)
                      ++..+ +..+..++.+.+-..+|++.|+|-|++...+ +=|+.-|+
T Consensus       158 ~~~~~-ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~-sl~v~~G~  201 (284)
T PRK12888        158 SWPAV-LLGLAVGLWIGGFDLIYACQDAEVDRRIGVR-SVPARFGV  201 (284)
T ss_pred             CHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHCCCc-CcchhhCc
Confidence            44333 3455566777888999999999999976542 45555554

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=81.15  E-value=17  Score=34.91  Aligned_cols=47  Identities=21%  Similarity=0.083  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhhhcccccccccCCCCCCCccccCCCCHHHHHHHHHHHHHHH
Q 019626          148 LLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGLLTPFQGLSFLGFQLLLG  198 (338)
Q Consensus       148 ~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~IS~~~A~~~~~~l~~lg  198 (338)
                      .+...+....||.-|+|.|+++.|. +=|.   ++.++.+..+...+...+
T Consensus       174 g~l~~~il~~Nn~~D~~~D~~~Gk~-Tl~v---~lG~~~a~~l~~~l~~~a  220 (284)
T TIGR00751       174 GLLACAVLNINNLRDIPTDARAGKN-TLAV---RLGDARTRMYHQGLLAVA  220 (284)
T ss_pred             HHHHHHHHHHcCcccchhHHHcCCE-eehh---hcchHhHHHHHHHHHHHH
Confidence            3455777789999999999988652 2333   455566655544444333

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=80.24  E-value=7.2  Score=37.02  Aligned_cols=37  Identities=19%  Similarity=0.077  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHhhhcccccccccCCCCCCCccccCC
Q 019626          144 GCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASGL  181 (338)
Q Consensus       144 ~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG~  181 (338)
                      ++..++.+.+-..+||+-|+|.|++..++ .=|+.-|+
T Consensus       160 ~~~~f~~~~~~~~~~~~~D~~~D~~~G~~-tlpv~~G~  196 (279)
T PRK09573        160 FLCAFFSTWSREIVKDIEDIEGDLKENVI-TLPIKYGI  196 (279)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHCCCc-cccHHhhH
Confidence            34445556677788999999999976553 45665553

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=80.01  E-value=7.7  Score=37.70  Aligned_cols=37  Identities=19%  Similarity=0.072  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHhhhcccccccccCCCCCCCccccC
Q 019626          143 FGCGALLLRGAGCTVNDLLDRDIDNMVERTRLRPVASG  180 (338)
Q Consensus       143 ~~l~~~l~~~a~~~lND~~D~~iD~~~~rt~~RPI~sG  180 (338)
                      ..+..++...+-..+||+.|+|-|+++.++ +=|+.=|
T Consensus       187 ~~~~~~~~~~~~~l~~di~D~egD~~~Gi~-Tlav~lG  223 (308)
T PRK12887        187 LTLFVLVFTFAIAIFKDIPDMEGDRQYQIT-TFTLRLG  223 (308)
T ss_pred             HHHHHHHHHHHHHHHHhccchhhHHHcCCc-chhHHHh
Confidence            334445666778889999999999987652 3444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	338
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 6e-04
 Identities = 58/414 (14%), Positives = 108/414 (26%), Gaps = 114/414 (27%)

Query: 4   FWVS--CVFRRSRFLKP--SLSLLLSGN-NKPSNPILNPKLNPHIAK--LTN--HDRWVP 54
           FW++          L+    L   +  N    S+   N KL  H  +  L      +   
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 55  NSEQNFRYVWVASI-------C----TTPSQS-------------SVEKETSSSNEK--- 87
           N       V  A         C    TT  +              S++  + +       
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 88  ---SSWIDLY---LPRQARAYAKLARLDKPIGTWLLAWPCMW-----------------S 124
                ++D     LPR+             I   +      W                 S
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 125 ITMAAPRGHFPDFKMMALFGCGALLLRGAGCTV-NDLLDRDIDNMVERTRLRPVASGLLT 183
           + +  P  +   F  +++F   A +       +  D++  D+  +V +         L+ 
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----SLVE 418

Query: 184 --PFQGLSFL-GFQLLLGLGILLQLNNF----SRILGASSLLLVF--------------- 221
             P +    +    L L     ++L N       I+   ++   F               
Sbjct: 419 KQPKESTISIPSIYLEL----KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 222 ---SYPLMK-----RFTFWPQAYLGLTFNW------GALLGWAAVKGSLDLAVVFPMYIS 267
               + L       R T +   +  L F +           W A    L+       Y  
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVF--LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532

Query: 268 GVFWTLDKEDDLKVGVKSTALRFGDSSKEWTTGFGIACISSLALSGYNADIGIY 321
            +    D +   +  V +  L F    +E         +  +AL     D  I+
Sbjct: 533 YIC---DNDPKYERLVNAI-LDFLPKIEENLICSKYTDLLRIALM--AEDEAIF 580

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00