Citrus Sinensis ID: 019627

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQQPPFKRPRNYEDNESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSELQVIGGRTEGEAGNPSFISVKPQLVPANDSSPTAVLPTLNKEGQGKQCLFKWKGPKKINRIYADWLDDMPLAHNLPSQVES
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccEcccHHHHcccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccEcccccHHcccccccccccHHccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHEHccHHHcccccccccccccc
Coil and Loop (DISEMBL)
msfpnssspflaqelqsysagsdaigvwpqfsmsdeqqydrlsqydqqppfkrprnyednesnsatyppmnprmnpsmnlpinkgitnIFFKTRLCAkfkhgacrngencnfahgmedlrqpppnwqelvgggraeedrssggnwdddQKIIHKMKLCKkfyngeecpygdrcnflhedpakfrddsgryressaisigttgppvvtgscsnqaegnrpvgsncvkpvywKTKLCIkwtqgqcpfgekchfahgqsELQViggrtegeagnpsfisvkpqlvpandssptavlptlnkegqgkqclfkwkgpkkiNRIYADwlddmplahnlpsqves
Flexible Loop (DISEMBL)
MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQQPPfkrprnyednesnsatyppmnprmNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGraeedrssggnwdddqkIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSaisigttgppvvTGSCSnqaegnrpvgsncvkPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSELQVIGGRTEGEAGNPSFISVKPQLVPANDSSPTAVLptlnkegqgkqclfkwkgpKKINRIYADWLDDMPLAHNLPSQVES
Low Complexity Region (SEG)
MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQQPPFKRPRNYEDNESNSATYppmnprmnpsmnlpINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSELQVIGGRTEGEAGNPSFISVKPQLVPANDSSPTAVLPTLNKEGQGKQCLFKWKGPKKINRIYADWLDDMPLAHNLPSQVES
Disordered region (IsUnstruct)
************************IGVW****************************************************PINKGITNIFFKTRLCAKFKHGACRNGENCNFAHG********************************DQKIIHKMKLCKKFYNGEECPYGDRCNFLHE*****************************************VGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSELQVIG***************************************GKQCLFKWKGPKKINRIYADWLDDMPL**********
Disordered Region (DISOPRED)
********************************************************************************************TRLCAKFKHGACRNGENCNFAHGMEDLRQPPPN*************************IIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGS*************NCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQS**********************************************************INRIYADWLDDMPL**********
Disordered Region (DISEMBL)
*********FLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQQPPFKRPRNYEDNESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELV**************WDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSELQVIGGRTEGEAGNPSFISVKPQLVPANDSSPTAVLPTLNKEGQGKQCLFKWKGPKKINRIYADWLDDMPLAHNLPSQVES
Disordered Region (DISPRO)
*************************************************************************************ITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQEL********************KIIHKMKLCKKFYNGEECPYGDRCNFLHEDP************S**ISI*TTGPPVVTGSCSNQ***********VKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSELQV*******************************************QCLFKWKGPKKINRIYADWLDDMPLAH********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQQPPFKRPRNYEDNESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSELQVIGGRTEGEAGNPSFISVKPQLVPANDSSPTAVLPTLNKEGQGKQCLFKWKGPKKINRIYADWLDDMPLAHNLPSQVES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	338	2.2.26 [Sep-21-2011]
Q9LT81	386	Zinc finger CCCH domain-c	yes	no	0.852	0.746	0.522	3e-83
Q84UQ3	367	Zinc finger CCCH domain-c	yes	no	0.698	0.643	0.372	4e-39
Q9LQM3	384	Zinc finger CCCH domain-c	no	no	0.683	0.601	0.356	2e-36
Q5PP65	252	Zinc finger CCCH domain-c	no	no	0.470	0.630	0.333	4e-18
Q6S9E0	325	Tristetraprolin OS=Ovis a	N/A	no	0.183	0.190	0.363	1e-08
P26651	326	Tristetraprolin OS=Homo s	yes	no	0.254	0.263	0.301	2e-08
Q69XQ3	295	Zinc finger CCCH domain-c	no	no	0.349	0.4	0.288	7e-08
P53781	324	Tristetraprolin OS=Bos ta	yes	no	0.183	0.191	0.352	8e-08
Q7XPK1	309	Zinc finger CCCH domain-c	no	no	0.319	0.349	0.282	9e-08
P22893	319	Tristetraprolin OS=Mus mu	yes	no	0.183	0.194	0.340	2e-07

>sp|Q9LT81|C3H39_ARATH Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana GN=At3g19360 PE=2 SV=1

 Score =  309 bits (791), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 171/327 (52%), Positives = 205/327 (62%), Gaps = 39/327 (11%)

Query: 51  FKRPRNYEDNESNSATYPPM----NPRMNPSMNLP-INKGITNIFFKTRLCAKFKHGACR 105
            KRPR  +DN  N A+  P     NP M PS+N P +NKG  NIF+KTR+CAKF+ G CR
Sbjct: 60  LKRPRLVDDNLFNPASSFPQPSSSNPWMVPSLNPPPVNKGTANIFYKTRMCAKFRAGTCR 119

Query: 106 NGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSS-----------------GGNWDDD 148
           NGE CNFAHG+EDLRQPP NWQE+VG   A +DR                     NW+DD
Sbjct: 120 NGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERERERERPSLAPVVNNNWEDD 179

Query: 149 QKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTG 208
           QKII +MKLC+KF  GEECPYGDRCNF+HED +KFR+DSG+ RESS IS+G T     + 
Sbjct: 180 QKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSD 239

Query: 209 SCSNQAEGNR----PV-----GSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSEL 258
           + SN  E NR    PV         VK VYWKT+LC+K+   GQCPFG+KCHFAHGQ+EL
Sbjct: 240 TASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAEL 299

Query: 259 QVIGGRTEGEAGNPSFISVKPQLVPAND-------SSPTAVLPTLNKEGQGKQCLFKWKG 311
               GR EGEA N      K  +VPAN+       +  TA    LN+EG+ K+CL KW  
Sbjct: 300 HNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTADSSGLNEEGRRKKCLLKWSD 359

Query: 312 PKKINRIYADWLDDMPLAHNLPSQVES 338
            KKINRIY DW+DD+P+       VES
Sbjct: 360 SKKINRIYGDWIDDLPVGQKSTKPVES 386

Arabidopsis thaliana (taxid: 3702)

>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica GN=Os08g0159800 PE=2 SV=1

 Score =  162 bits (409), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 142/301 (47%), Gaps = 65/301 (21%)

Query: 79  NLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGG-RAEE 137
           N   ++ I  +FFKT+LC KF+ G C    NCNFAHGME+LR+PPPNWQE+V     A E
Sbjct: 76  NTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPPPNWQEIVAAHEEATE 135

Query: 138 DR---------SSGGNWDDDQKI----------IHKMKLCKKFYNGEECPYGDRCNFLHE 178
            R         SSG     D              +K + CKKFY  E CPYGD C FLH 
Sbjct: 136 AREEHQIPIMTSSGPTAGGDAGCGGGGGGGSGRAYKGRHCKKFYTDEGCPYGDACTFLH- 194

Query: 179 DPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSN----------QAEGNRPVGSNCVKPV 228
                 D+  + RES AIS+  +      G   N           A GN P+     KP 
Sbjct: 195 ------DEQSKARESVAISLSPSVGGGGGGGSYNSAAAAAASASAAAGNGPM----QKPS 244

Query: 229 YWKTKLCIKW-TQGQCPFGEKCHFAHGQSELQVIGG-------RTEGEAGNPSFISVKPQ 280
            WKT++C KW   G CPFG KCHFAHG +EL   GG       R      +     V  +
Sbjct: 245 NWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYGGGLVDIDSRDAAATPDSKQAVVSAK 304

Query: 281 LVPANDSSPTAVLPTLN----------------KEGQGKQCLFKWKGPKKINRIYADWLD 324
                 ++ T VLP  +                + GQ ++ + KWKGP KI+RIY DW+D
Sbjct: 305 APAETAAASTTVLPHADVYHLGVQAQRSTIAGQRSGQVQRPIQKWKGPDKISRIYGDWID 364

Query: 325 D 325
           +
Sbjct: 365 E 365

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LQM3|C3H12_ARATH Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana GN=At1g32360 PE=2 SV=1

 Score =  153 bits (386), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/311 (35%), Positives = 140/311 (45%), Gaps = 80/311 (25%)

Query: 84  KGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGG 143
           K I  +FFKT+LC KF+ G C    NCNFAH +E+LR+PPPNWQE+V    A E+  SGG
Sbjct: 85  KAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVEELRRPPPNWQEIVA---AHEEERSGG 141

Query: 144 NWDDDQKIIH----------------------KMKLCKKFYNGEECPYGDRCNFLHEDPA 181
                  ++                       K + CKKFY  E CPYG+ C FLH    
Sbjct: 142 MGTPTVSVVEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLH---- 197

Query: 182 KFRDDSGRYRESSAISIGTTGPP--------------------VVTGSCSNQAEGNRPVG 221
              D++ R RES AIS+G  G                      VV       +     + 
Sbjct: 198 ---DEASRNRESVAISLGPGGYGSGGGGGSGGGSVGGGGSSSNVVVLGGGGGSGSGSGI- 253

Query: 222 SNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSELQVIGG---RTEGEAG------- 270
              +KP  WKT++C KW   G CPFG KCHFAHG +EL   GG     EG+ G       
Sbjct: 254 -QILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVEEEGKDGVSPNPDT 312

Query: 271 -----NPSFISVKPQL----VPANDSSPTAVLPTLNKEGQ------GKQCLFKWKGPKKI 315
                NP  +S    L    VP N  +       L +         G +   KWKGP KI
Sbjct: 313 KQTVQNPKGLSDTTTLLSPGVPHNADASYHTGVALQRASSAVTQKPGIRTHQKWKGPAKI 372

Query: 316 NRIYADWLDDM 326
           +RIY DW+DD+
Sbjct: 373 SRIYGDWIDDI 383

Arabidopsis thaliana (taxid: 3702)

>sp|Q5PP65|C3H28_ARATH Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana GN=At2g35430 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 91/201 (45%), Gaps = 42/201 (20%)

Query: 150 KIIHKMKLCKKFYNGEECPY-GDRCNFLHE------------DPAKFRDDSGRYRESSAI 196
           K   K KLC KF  G  CPY    C+F H             +  +   ++ R RES A+
Sbjct: 69  KSFFKTKLCFKFRAGT-CPYSASSCHFAHSAEELRLPPPPPPNWQETVTEASRNRESFAV 127

Query: 197 SIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQ 255
           S+G  G    T                 +K   WKT++C KW T G CPFG  CHFAHG 
Sbjct: 128 SLGPRGNVAQT-----------------LKSPNWKTRICNKWQTTGYCPFGSHCHFAHGP 170

Query: 256 SELQVI-GGRTEGEAGNPSFISVKPQLVPANDSSPTAVLP---------TLNKEGQGKQC 305
           SEL    GG  EGE    +  ++  +     D+  + V P          + ++  G + 
Sbjct: 171 SELHTFGGGLVEGECKIGTSATLDTKQRGQVDTVTSLVSPGVSSQRTSSAVTQKPNGVRT 230

Query: 306 LFKWKGPKKINRIYADWLDDM 326
             KWKGP KI+R+Y DW+DD+
Sbjct: 231 QRKWKGPDKISRVYGDWIDDI 251

Arabidopsis thaliana (taxid: 3702)

>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 26/88 (29%)

Query: 91  FKTRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQ 149
           +KT LC  F + G CR G  C FAHG+ +LRQP                          +
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQP-------------------------SR 136

Query: 150 KIIHKMKLCKKFYNGEECPYGDRCNFLH 177
              +K +LC KFY    CPYG RC+F+H
Sbjct: 137 HPKYKTELCHKFYLQGRCPYGSRCHFIH 164

mRNA-binding protein involved in post-transcriptional regulation of AU-rich element (ARE)-containing mRNAs. Acts by specifically binding ARE-containing mRNAs and promoting their degradation. Plays a key role in the post-transcriptional regulation of tumor necrosis factor (TNF).

Ovis aries (taxid: 9940)

>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 30/116 (25%)

Query: 67  YPPMNPRMNPSMNLPINKGITNIF----FKTRLCAKF-KHGACRNGENCNFAHGMEDLRQ 121
           + P+ PR+ P ++               +KT LC  F + G CR G  C FAHG+ +LRQ
Sbjct: 76  FAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQ 135

Query: 122 PPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
                                     ++   +K +LC KFY    CPYG RC+F+H
Sbjct: 136 -------------------------ANRHPKYKTELCHKFYLQGRCPYGSRCHFIH 166

mRNA-binding protein involved in post-transcriptional regulation of AU-rich element (ARE)-containing mRNAs. Acts by specifically binding ARE-containing mRNAs and promoting their degradation. Plays a key role in the post-transcriptional regulation of tumor necrosis factor (TNF).

Homo sapiens (taxid: 9606)

>sp|Q69XQ3|C3H44_ORYSJ Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica GN=Os06g0618100 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 24/142 (16%)

Query: 127 QELVGGGRAEEDRSSGG------NWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDP 180
            E  GG RA  + ++G       +      +  K+K C KF++   CP+G  C+FLH  P
Sbjct: 1   MEAGGGKRAAPEGTNGAAKRARASESSQVGVGSKLKPCTKFFSTSGCPFGSSCHFLHNFP 60

Query: 181 AKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVG---SNCVKPVYWKTKLCIK 237
             ++  +   + +S        PP           G  P+G    N       KT++C K
Sbjct: 61  GGYQAAA---KMTSHGGTAVAAPP-----------GRMPLGPGAPNGPPTSSVKTRMCNK 106

Query: 238 WTQGQ-CPFGEKCHFAHGQSEL 258
           +   + C +G KCHFAHG+ EL
Sbjct: 107 YNTAEGCKWGSKCHFAHGEREL 128

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 26/88 (29%)

Query: 91  FKTRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQ 149
           +KT LC  F + G CR G  C FAHG+ +LRQ                           +
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQ-------------------------ASR 136

Query: 150 KIIHKMKLCKKFYNGEECPYGDRCNFLH 177
              +K +LC KFY    CPYG RC+F+H
Sbjct: 137 HPKYKTELCHKFYLQGRCPYGSRCHFIH 164

mRNA-binding protein involved in post-transcriptional regulation of AU-rich element (ARE)-containing mRNAs. Acts by specifically binding ARE-containing mRNAs and promoting their degradation. Plays a key role in the post-transcriptional regulation of tumor necrosis factor (TNF).

Bos taurus (taxid: 9913)

>sp|Q7XPK1|C3H31_ORYSJ Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica GN=Os04g0665700 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 23/131 (17%)

Query: 154 KMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQ 213
           K+K C KF++   CP+G+ C+F H  P  ++        +  +++G    P    +  + 
Sbjct: 39  KLKPCTKFFSTIGCPFGEGCHFSHFVPGGYQA------VAKTLNLGNPAVPAPARAPMDH 92

Query: 214 AEGNRPVGSNCVKPVYWKTKLCIKWTQGQ-CPFGEKCHFAHGQSELQVIGGRTEGEAGNP 272
           A      G N       KT++C K+   + C FG+KCHFAHG+ EL           G P
Sbjct: 93  A-----AGGNSHPASSGKTRMCTKYNTAEGCKFGDKCHFAHGEREL-----------GKP 136

Query: 273 SFISVKPQLVP 283
           +++S +  + P
Sbjct: 137 AYMSHESAMAP 147

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 26/88 (29%)

Query: 91  FKTRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQ 149
           +KT LC  + + G CR G  C FAHG+ +LRQ                          ++
Sbjct: 96  YKTELCRTYSESGRCRYGAKCQFAHGLGELRQ-------------------------ANR 130

Query: 150 KIIHKMKLCKKFYNGEECPYGDRCNFLH 177
              +K +LC KFY    CPYG RC+F+H
Sbjct: 131 HPKYKTELCHKFYLQGRCPYGSRCHFIH 158

mRNA-binding protein involved in post-transcriptional regulation of AU-rich element (ARE)-containing mRNAs. Acts by specifically binding ARE-containing mRNAs and promoting their degradation. Plays a key role in the post-transcriptional regulation of tumor necrosis factor (TNF).

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
255566953	341	conserved hypothetical protein [Ricinus	0.970	0.961	0.655	1e-123
224105223	341	predicted protein [Populus trichocarpa]	0.967	0.958	0.647	1e-122
224078145	313	predicted protein [Populus trichocarpa]	0.840	0.907	0.641	1e-102
449443305	347	PREDICTED: zinc finger CCCH domain-conta	0.961	0.936	0.572	1e-102
356565198	347	PREDICTED: zinc finger CCCH domain-conta	0.970	0.945	0.563	1e-100
356511656	345	PREDICTED: zinc finger CCCH domain-conta	0.958	0.939	0.569	2e-99
225445436	349	PREDICTED: zinc finger CCCH domain-conta	0.961	0.931	0.578	3e-96
18402211	386	zinc finger CCCH domain-containing prote	0.852	0.746	0.522	2e-81
297830586	389	zinc finger (CCCH-type) family protein [	0.852	0.740	0.509	4e-81
312283483	391	unnamed protein product [Thellungiella h	0.852	0.736	0.5	2e-78

>gi|255566953|ref|XP_002524459.1| conserved hypothetical protein [Ricinus communis] gi|223536247|gb|EEF37899.1| conserved hypothetical protein [Ricinus communis]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/351 (65%), Positives = 269/351 (76%), Gaps = 23/351 (6%)

Query: 1   MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQ-QPPFKRPRNYED 59
           MS+  S  PF++ +  +Y +GSDAIG+WPQF M+  +Q+D   Q+D  QPPFKRPRN ED
Sbjct: 1   MSYSESQPPFMSPQ-PTYQSGSDAIGIWPQFPMNSNEQFD--PQFDHHQPPFKRPRNSED 57

Query: 60  NESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDL 119
           N  +      MN RM P  NLPINKG TNIFFKTR+CAKFK G+CRNGENCNFAHGM+D+
Sbjct: 58  NNQS------MNYRMPPPNNLPINKGTTNIFFKTRMCAKFKTGSCRNGENCNFAHGMQDM 111

Query: 120 RQPPPNWQELVGGG-RAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHE 178
           RQPPPNWQELVG   R EEDR +G NWDDDQ+IIHKMKLCKKFYNGE+CPYGDRCNFLHE
Sbjct: 112 RQPPPNWQELVGVVVRGEEDRPAG-NWDDDQRIIHKMKLCKKFYNGEQCPYGDRCNFLHE 170

Query: 179 DPAKFRDDSGRYRESSAISIGTTGPPVVTGSCS-NQAEGNRPV---GSNC----VKPVYW 230
           DP+KFRDD+GR+RESSAISIGTT PP++ GS   +  E N+PV   G++     +KPVYW
Sbjct: 171 DPSKFRDDAGRFRESSAISIGTTAPPMMHGSGGLSVVEVNKPVNNAGADAYRGNMKPVYW 230

Query: 231 KTKLCIKW-TQGQCPFGEKCHFAHGQSELQVIGGRTEGEAGNPSFISVKPQLVPANDSSP 289
           KTKLC KW T GQCPFGEKCHFAHGQ+ELQ+  GR EGE GN   I  KP  +   + SP
Sbjct: 231 KTKLCTKWETTGQCPFGEKCHFAHGQAELQIPNGRAEGEVGNAGSILTKPPPILVTNGSP 290

Query: 290 --TAVLPTLNKEGQGKQCLFKWKGPKKINRIYADWLDDMPLAHNLPSQVES 338
             TA +P+L +E QGK+C  KWKG KKINRIY DWLDD+PL HNL +QVES
Sbjct: 291 SMTASVPSLVEERQGKKCFLKWKGFKKINRIYGDWLDDLPLVHNLTNQVES 341

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105223|ref|XP_002313732.1| predicted protein [Populus trichocarpa] gi|222850140|gb|EEE87687.1| predicted protein [Populus trichocarpa]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/352 (64%), Positives = 267/352 (75%), Gaps = 25/352 (7%)

Query: 1   MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQQPPFKRPRNYEDN 60
           MS+P+S   F++ +  SY AGSDAIGVWPQF M++ +Q++       QPP+KRPRN EDN
Sbjct: 1   MSYPDSHDSFMSPQA-SYQAGSDAIGVWPQFVMNNIEQFEH-----HQPPYKRPRNSEDN 54

Query: 61  ESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLR 120
            + S     +N R  P+ NLP++KG TNIFFKTR+CAKFK G CRNGENCNFAHGM+DLR
Sbjct: 55  PNQS-----VNSRTPPTNNLPVHKGATNIFFKTRVCAKFKTGTCRNGENCNFAHGMQDLR 109

Query: 121 QPPPNWQELVGGG-RAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHED 179
           QPPPNW+ELVG    +EEDRS+  NW+DDQ+IIHKMKLCKKFYNGEECPYGDRCNFLHED
Sbjct: 110 QPPPNWKELVGVSVSSEEDRSTATNWEDDQRIIHKMKLCKKFYNGEECPYGDRCNFLHED 169

Query: 180 PAKFRDDSGRYRESSAISIGTTGPPVVTGS-CSNQAEGNRPVG--------SNCVKPVYW 230
           P+KFR+D+GR+RESSAISIGTTG  +  GS   N AE NRP          SN +KPVYW
Sbjct: 170 PSKFREDTGRFRESSAISIGTTGQALGHGSGVFNAAEVNRPANNAVSDASRSNIIKPVYW 229

Query: 231 KTKLCIKW-TQGQCPFGEKCHFAHGQSELQVIGGRTEGEAGNPSFISVK--PQLVPANDS 287
           KTKLC KW   GQCPFGEKCHFAHG +ELQ  GGRTE EAGN   +  K  P L+P N S
Sbjct: 230 KTKLCTKWEITGQCPFGEKCHFAHGLAELQAPGGRTEVEAGNAGSVLTKAPPPLLPNNVS 289

Query: 288 -SPTAVLPTLNKEGQGKQCLFKWKGPKKINRIYADWLDDMPLAHNLPSQVES 338
            S T  +P+L +E QGK+CL KWKG KKINRIYADWLDD+PL HNL +QV+S
Sbjct: 290 PSMTVNVPSLIEEEQGKKCLLKWKGQKKINRIYADWLDDLPLVHNLTNQVQS 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078145|ref|XP_002305494.1| predicted protein [Populus trichocarpa] gi|222848458|gb|EEE86005.1| predicted protein [Populus trichocarpa]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/304 (64%), Positives = 229/304 (75%), Gaps = 20/304 (6%)

Query: 49  PPFKRPRNYEDNESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGE 108
           PP+KRPRN EDN + S     M+ R+ P+ +LP++KG TNIFFKTR+CAKFK G CRNGE
Sbjct: 16  PPYKRPRNSEDNSNQS-----MSSRVPPTNSLPVHKGTTNIFFKTRVCAKFKTGTCRNGE 70

Query: 109 NCNFAHGMEDLRQPPPNWQELVGGG-RAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEEC 167
           NCNFAHGM+DLRQPPPNW+ELV  G  +E+DRS+  N +DD +IIHKMKLCKKFYNGEEC
Sbjct: 71  NCNFAHGMQDLRQPPPNWKELVSVGVSSEDDRSTATNREDDLRIIHKMKLCKKFYNGEEC 130

Query: 168 PYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGS-CSNQAEGNRPVG----- 221
           PYGDRCNFLHEDPA FR+D+GR+RESSAISIGTT   +  GS   N AE NRP       
Sbjct: 131 PYGDRCNFLHEDPANFREDTGRFRESSAISIGTTDHLMGQGSGIFNAAEVNRPANNAVSD 190

Query: 222 ---SNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSELQVIGGRTEGEAGNP-SFIS 276
              SN +KPVYWKTKLC KW   GQCPFGEKCHFAHG +ELQV G RTE +AGN  S ++
Sbjct: 191 APRSNLIKPVYWKTKLCTKWEMTGQCPFGEKCHFAHGLAELQVPGVRTEVDAGNAGSNVT 250

Query: 277 VKPQLVPANDSSP--TAVLPTLNKEGQGKQCLFKWKGPKKINRIYADWLDDMPLAHNLPS 334
             P  V  N+ SP  T  +P+L +E +G +CL KWKG KKINRIYADWLDD+ L HN  +
Sbjct: 251 KAPTPVLPNNMSPSMTVNVPSLVEE-KGTKCLLKWKGQKKINRIYADWLDDLSLVHNSTN 309

Query: 335 QVES 338
           QV+S
Sbjct: 310 QVQS 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443305|ref|XP_004139420.1| PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis sativus] gi|449520655|ref|XP_004167349.1| PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis sativus]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/358 (57%), Positives = 250/358 (69%), Gaps = 33/358 (9%)

Query: 1   MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYD-QQPPFKRPRNYED 59
           MSF +  +  +   L SY +  DA G W QF  +D   +D  SQ++ QQPP+KR RN E+
Sbjct: 1   MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDP--FDPQSQFEVQQPPYKRARNSEE 58

Query: 60  NESNSATY--PPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGME 117
           N S+  +Y  P +N R  P  N P+NKGI+NIFFKTR+CAKFK G CRNG +CNFAHG+E
Sbjct: 59  NPSSPISYSNPSLNSRGQPP-NAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVE 117

Query: 118 DLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
           D+RQPPPNWQE+VG    +ED  S  NW+DDQKII KMKLC+KFYNGEECPYGDRCNFLH
Sbjct: 118 DMRQPPPNWQEIVG---IKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLH 174

Query: 178 EDPAKFRDDSGRYRESSAISIGTTGPPVVTGS-CSNQAEGNRPVGSNC---------VKP 227
           EDPAKFRDDSGR+RESSAISIGTTG P++ G+  S+  E +R    +          V+P
Sbjct: 175 EDPAKFRDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSCSVSDALRANGNVRP 234

Query: 228 VYWKTKLCIKW-TQGQCPFGEKCHFAHGQSELQVIGGRTEGEAGNPSFISVKPQLVPAND 286
            +WKTKLC KW   G CPFG+KCHFAHGQSELQ+  GR EGE    + ++VKP +V    
Sbjct: 235 SFWKTKLCTKWEITGHCPFGDKCHFAHGQSELQLYIGR-EGEVSTAA-LNVKPLIVAMEA 292

Query: 287 SS-------PTAVLPTLNKEGQGKQCLFKWKGPKKINRIYADWLDDMPLAHNLPSQVE 337
           SS       P++ LP    EGQ K  L KWKGPKKINRIYADWLDD+PL+ +  S++E
Sbjct: 293 SSSLTTNVVPSSALP----EGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKME 346

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565198|ref|XP_003550830.1| PREDICTED: zinc finger CCCH domain-containing protein 39-like [Glycine max]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/353 (56%), Positives = 242/353 (68%), Gaps = 25/353 (7%)

Query: 1   MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQQPPFKRPRNYEDN 60
           MSF +    F+     S+S  +DAI V  QF M++E   +  S  D+ P FKR R  +++
Sbjct: 1   MSFSDHIPSFMMSP-PSFSTDTDAIEVRLQFPMNNES-LEPHSPQDRPPSFKRARTCDNS 58

Query: 61  ESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLR 120
            SN+   PP   RM    +  +NKG ++IFFKTR+CAKF+ GACRNGENCNFAHG+ED+R
Sbjct: 59  LSNAMACPP---RM--IQHPAVNKGTSHIFFKTRICAKFRVGACRNGENCNFAHGLEDMR 113

Query: 121 QPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDP 180
           QPPPNWQELVG  R EE     G+WDDDQKIIHKMKLCKK+YNGEECPYGD+C+FLHEDP
Sbjct: 114 QPPPNWQELVGL-RGEERPPMAGDWDDDQKIIHKMKLCKKYYNGEECPYGDKCSFLHEDP 172

Query: 181 AKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNC------VKPVYWKTKL 234
           A+FRDDS RYRES++ISIGT G P   G  SN  E NR V +        VK  YWKTKL
Sbjct: 173 ARFRDDSVRYRESTSISIGTNGSPKSYGDASNNLESNRAVNTGLNVFRGNVKSTYWKTKL 232

Query: 235 CIKW-TQGQCPFGEKCHFAHGQSELQVIGGRTEGEAGNPSFISVKPQL--------VPAN 285
           CIK+ T G CPFG+ CHFAHGQ+ELQV GGRTE E    + IS K  +        V +N
Sbjct: 233 CIKFETTGHCPFGDDCHFAHGQAELQVPGGRTEAETAGVNPISTKATIPTLPRATSVSSN 292

Query: 286 DSSPT--AVLPTLNKEGQGKQCLFKWKGPKKINRIYADWLDDMPLAHNLPSQV 336
           D+ P+  A +P  N++ + K+ L KWKG KKINRIY DWLDD+PL HNLP +V
Sbjct: 293 DAPPSHRASVPPANEKERDKKYLLKWKGHKKINRIYGDWLDDLPLVHNLPGRV 345

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511656|ref|XP_003524539.1| PREDICTED: zinc finger CCCH domain-containing protein 39-like [Glycine max]

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 200/351 (56%), Positives = 240/351 (68%), Gaps = 27/351 (7%)

Query: 1   MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQQPPFKRPRNYEDN 60
           MSF +    F+     S+S  +DAI V  QF  ++E   +  S  DQ P FKR R  + +
Sbjct: 1   MSFSDHIPSFMMSP-PSFSTDTDAIEVRLQFPTNNES-LEPHSPQDQPPSFKRARTCDSS 58

Query: 61  ESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLR 120
            SN+   PP   RM    +  +NKG ++IFFKTR+CAKF+ GACRNGENCNFAHG+ED+R
Sbjct: 59  LSNAMACPP---RM--IQHPALNKGTSHIFFKTRICAKFRAGACRNGENCNFAHGLEDMR 113

Query: 121 QPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDP 180
           QPPPNWQELVG  R EE   + G+WDDDQKIIHKMKLCKK+YNGEECPYGD+C+FLHEDP
Sbjct: 114 QPPPNWQELVGL-RNEERPPTMGDWDDDQKIIHKMKLCKKYYNGEECPYGDKCSFLHEDP 172

Query: 181 AKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNC------VKPVYWKTKL 234
           A+FRDDS RYRES+AISIGT G P   G  SN  E NR V +        VK  YWKTKL
Sbjct: 173 ARFRDDSVRYRESTAISIGTNGSPKSYGDASNNLESNRAVNTGLNVFRGNVKSTYWKTKL 232

Query: 235 CIKW-TQGQCPFGEKCHFAHGQSELQVIGGRTEGEAGNPSFISVKPQL--------VPAN 285
           CIK+ T G CPFG+ CHFAHGQ+ELQV GGRTE E      IS K  +        V +N
Sbjct: 233 CIKFETTGHCPFGDDCHFAHGQAELQVPGGRTEAEIPGAIPISTKATIPTLPRATSVSSN 292

Query: 286 DSSPT---AVLPTLNKEGQGKQCLFKWKGPKKINRIYADWLDDMPLAHNLP 333
           D+ P+   +VLP  N+E Q ++CL KWKG +KINRIY DWLDD+PL H+LP
Sbjct: 293 DAPPSHRASVLPA-NEEDQDEKCLLKWKGHRKINRIYGDWLDDLPLVHDLP 342

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445436|ref|XP_002281877.1| PREDICTED: zinc finger CCCH domain-containing protein 39-like [Vitis vinifera]

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 203/351 (57%), Positives = 237/351 (67%), Gaps = 26/351 (7%)

Query: 1   MSFPNSSSPFLAQELQSYSAGSDAIGVWPQFSMSDEQQYDRLSQYDQQPPFKRPRNYEDN 60
           MSFP+S +  +A  L  +  G D IG W QF M++E+ Y+  S + + PP KR RN E  
Sbjct: 1   MSFPDSRA-LVAPPLHPFPVGDDDIGSWSQFPMNNEE-YEVHSHF-EYPPHKRTRNSEGQ 57

Query: 61  ESNSATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLR 120
             NS+ +P MNPR++P  N P ++G +NIFFKTR+CAKFK G CRNGENCNFAHGMED+R
Sbjct: 58  MPNSSPHPSMNPRIHPP-NAPTSRGTSNIFFKTRICAKFKLGQCRNGENCNFAHGMEDMR 116

Query: 121 QPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDP 180
           QPPPNWQELV  G  EE+R +   WD+DQ+IIHKMKLCKKFYNGEECPYGDRCNFLHEDP
Sbjct: 117 QPPPNWQELVNVGGREEERGTKI-WDEDQRIIHKMKLCKKFYNGEECPYGDRCNFLHEDP 175

Query: 181 AKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNR-----------PVGSNCVKPVY 229
            KFRDDS R RES AISIGTTGPP+  GS SN                 P   N VKP Y
Sbjct: 176 KKFRDDSARPRESFAISIGTTGPPMEHGSGSNLGSNLSSNLSSMNSGLDPFRGN-VKPTY 234

Query: 230 WKTKLCIKW-TQGQCPFGEKCHFAHGQSELQVIGGR------TEGEAGNPSFISVKPQLV 282
           WKTKLC KW T G CPFGEKCHFAHGQ+ELQ+ GG        E E GN   +  K   V
Sbjct: 235 WKTKLCCKWETTGHCPFGEKCHFAHGQAELQMTGGGGGGGGWAEAEVGNTCSLPAKLPSV 294

Query: 283 PANDSSP--TAVLPTLNKEGQGKQCLFKWKGPKKINRIYADWLDDMPLAHN 331
           PAN S+P        +N E Q K+ L + KG KKINRIYADW+DD+P  +N
Sbjct: 295 PANVSTPPELGTGAPINPERQNKKLLLQSKGFKKINRIYADWIDDLPSLNN 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402211|ref|NP_566631.1| zinc finger CCCH domain-containing protein 39 [Arabidopsis thaliana] gi|75274079|sp|Q9LT81.1|C3H39_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 39; Short=AtC3H39 gi|11994458|dbj|BAB02460.1| unnamed protein product [Arabidopsis thaliana] gi|14335094|gb|AAK59826.1| AT3g19360/MLD14_8 [Arabidopsis thaliana] gi|19548069|gb|AAL87398.1| AT3g19360/MLD14_8 [Arabidopsis thaliana] gi|332642708|gb|AEE76229.1| zinc finger CCCH domain-containing protein 39 [Arabidopsis thaliana]

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 171/327 (52%), Positives = 205/327 (62%), Gaps = 39/327 (11%)

Query: 51  FKRPRNYEDNESNSATYPPM----NPRMNPSMNLP-INKGITNIFFKTRLCAKFKHGACR 105
            KRPR  +DN  N A+  P     NP M PS+N P +NKG  NIF+KTR+CAKF+ G CR
Sbjct: 60  LKRPRLVDDNLFNPASSFPQPSSSNPWMVPSLNPPPVNKGTANIFYKTRMCAKFRAGTCR 119

Query: 106 NGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSS-----------------GGNWDDD 148
           NGE CNFAHG+EDLRQPP NWQE+VG   A +DR                     NW+DD
Sbjct: 120 NGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERERERERPSLAPVVNNNWEDD 179

Query: 149 QKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTG 208
           QKII +MKLC+KF  GEECPYGDRCNF+HED +KFR+DSG+ RESS IS+G T     + 
Sbjct: 180 QKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSD 239

Query: 209 SCSNQAEGNR----PV-----GSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSEL 258
           + SN  E NR    PV         VK VYWKT+LC+K+   GQCPFG+KCHFAHGQ+EL
Sbjct: 240 TASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAEL 299

Query: 259 QVIGGRTEGEAGNPSFISVKPQLVPAND-------SSPTAVLPTLNKEGQGKQCLFKWKG 311
               GR EGEA N      K  +VPAN+       +  TA    LN+EG+ K+CL KW  
Sbjct: 300 HNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTADSSGLNEEGRRKKCLLKWSD 359

Query: 312 PKKINRIYADWLDDMPLAHNLPSQVES 338
            KKINRIY DW+DD+P+       VES
Sbjct: 360 SKKINRIYGDWIDDLPVGQKSTKPVES 386

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830586|ref|XP_002883175.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata] gi|297329015|gb|EFH59434.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  307 bits (787), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 167/328 (50%), Positives = 207/328 (63%), Gaps = 40/328 (12%)

Query: 51  FKRPRNYEDNESNSATYPPM----NPRMNPSMNLP-INKGITNIFFKTRLCAKFKHGACR 105
            KRPR  +DN  N A+  P     NP M PS+N P +NKG  NIF+KTR+CAKF+ G CR
Sbjct: 62  LKRPRLVDDNVFNPASSFPQPSSSNPWMVPSLNPPPVNKGTANIFYKTRMCAKFRAGTCR 121

Query: 106 NGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRS------------------SGGNWDD 147
           NGE CNFAHG+EDLRQPP NWQE+VG    ++                     +  NW+D
Sbjct: 122 NGELCNFAHGIEDLRQPPSNWQEIVGPPPGQDREKERERERERERERPSLAPVANNNWED 181

Query: 148 DQKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVT 207
           DQKII +MKLC+KF  GEECPYGDRCNF+HED +KFR+DSG+ RESS IS+GT+     +
Sbjct: 182 DQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGTSAADPPS 241

Query: 208 GSCSNQAEGNR----PV-----GSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSE 257
            + SN  E NR    PV         VK VYWKT+LC+K+   GQCPFG+KCHFAHGQ+E
Sbjct: 242 DTASNHIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQTE 301

Query: 258 LQVIGGRTEGEAGNPSFISVKPQLVPANDS---SPTAVLPT----LNKEGQGKQCLFKWK 310
           L    GR +GEA N +    K  +VPAN++    PT  +      LN+EG+ K+CL KW 
Sbjct: 302 LHNSVGRVDGEAVNATASVSKQTVVPANEAFAMKPTTQVTADSSGLNEEGRRKKCLLKWS 361

Query: 311 GPKKINRIYADWLDDMPLAHNLPSQVES 338
             KKINRIY DW+DD+P+       VES
Sbjct: 362 DSKKINRIYGDWIDDLPVGQKSSKPVES 389

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283483|dbj|BAJ34607.1| unnamed protein product [Thellungiella halophila]

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 164/328 (50%), Positives = 206/328 (62%), Gaps = 40/328 (12%)

Query: 51  FKRPRNYEDNESNSA-TYPPM----NPRMNPSMN-LPINKGITNIFFKTRLCAKFKHGAC 104
            KRPR  +DN  N A ++PP     NP M PS+N  P+NKG  NIF+KTR+CAKFK G C
Sbjct: 64  LKRPRLVDDNLFNPASSFPPTSNNNNPSMVPSLNPPPVNKGTANIFYKTRMCAKFKAGTC 123

Query: 105 RNGENCNFAHGMEDLRQPPPNWQELVG----------------GGRAEEDRSSGGNWDDD 148
           RNGE CNFAHG+EDLRQPP NWQE+VG                        S G NW+DD
Sbjct: 124 RNGELCNFAHGIEDLRQPPSNWQEIVGPPVQDRERERERERERERERPSSVSVGNNWEDD 183

Query: 149 QKIIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTT---GPPV 205
           QKII +MKLC+KF  GEECPYG+RCNF+HED +KFR++SG+ RESS IS+GT+    P V
Sbjct: 184 QKIILRMKLCRKFCFGEECPYGERCNFIHEDLSKFREESGKPRESSVISVGTSVADSPCV 243

Query: 206 VTGSCS-NQAEGNRPVGSNCVKPV-------YWKTKLCIKWTQGQCPFGEKCHFAHGQSE 257
             G+ + NQ + NR  G     P+       +WKT+LC+K+  GQCPFG+ C FAHGQ+E
Sbjct: 244 ENGTTAYNQIDVNRQGGIPVPAPINSNGGVKFWKTRLCMKFEIGQCPFGDNCSFAHGQAE 303

Query: 258 LQVIGGRTEGEAGNPSFISVKPQLVPANDS---SPTAVLPT----LNKEGQGKQCLFKWK 310
           L    GR +GEA N     +K  + PAN++    PTA +      LN EG+ K+CL KW 
Sbjct: 304 LHNSLGRVDGEAVNAVASVIKQTVAPANEAFAMKPTAQVTADSSGLNDEGRRKKCLLKWS 363

Query: 311 GPKKINRIYADWLDDMPLAHNLPSQVES 338
             KKINRIY DW+DD+P+       V+S
Sbjct: 364 DSKKINRIYGDWIDDLPVGQKSTKPVQS 391

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
TAIR|locus:2090669	386	AT3G19360 [Arabidopsis thalian	0.547	0.479	0.475	3.7e-68
TAIR|locus:2028306	384	AT1G32360 [Arabidopsis thalian	0.360	0.317	0.390	1e-23
TAIR|locus:2062476	252	AT2G35430 [Arabidopsis thalian	0.535	0.718	0.343	3e-21
ZFIN|ZDB-GENE-030131-6366	336	zgc:162730 "zgc:162730" [Danio	0.227	0.229	0.308	4.8e-11
TAIR|locus:2099292	248	AT3G12130 [Arabidopsis thalian	0.127	0.173	0.448	5.9e-11
SGD|S000002558	325	CTH1 "Member of the CCCH zinc	0.180	0.187	0.285	5e-08
UNIPROTKB|Q6S9E0	325	ZFP36 "Tristetraprolin" [Ovis	0.106	0.110	0.513	8e-08
UNIPROTKB|P26651	326	ZFP36 "Tristetraprolin" [Homo	0.088	0.092	0.562	1.1e-07
DICTYBASE|DDB_G0285973	437	DDB_G0285973 "Butyrate respons	0.304	0.235	0.3	1.1e-07
MGI|MGI:99180	319	Zfp36 "zinc finger protein 36"	0.109	0.115	0.461	2.7e-07

TAIR|locus:2090669 AT3G19360 [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 3.7e-68, Sum P(2) = 3.7e-68
 Identities = 97/204 (47%), Positives = 124/204 (60%)

Query:   117 EDLRQPPPNWQELVGGGRAEEDRSS-------GGNWDDDQKIIHKMKLCKKFYNGEECPY 169
             +++  PPP  Q+       E +R           NW+DDQKII +MKLC+KF  GEECPY
Sbjct:   141 QEIVGPPPAGQDRERERERERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPY 200

Query:   170 GDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNR----PV----- 220
             GDRCNF+HED +KFR+DSG+ RESS IS+G T     + + SN  E NR    PV     
Sbjct:   201 GDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMN 260

Query:   221 GSNCVKPVYWKTKLCIKWT-QGQCPFGEKCHFAHGQSELQVIGGRTEGEAGNPSFISVKP 279
                 VK VYWKT+LC+K+   GQCPFG+KCHFAHGQ+EL    GR EGEA N +  SV  
Sbjct:   261 NGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSVGRVEGEAMN-AVASVNK 319

Query:   280 Q-LVPANDSSPTAVLPTLNKEGQG 302
             Q +VPAN++     +  +  +  G
Sbjct:   320 QAVVPANEAFAMKPITQVTADSSG 343

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2028306 AT1G32360 [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 55/141 (39%), Positives = 69/141 (48%)

Query:   154 KMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDD------SGRYRE-----SSAISIGTTG 202
             K + CKKFY  E CPYG+ C FLH++ ++ R+        G Y       S   S+G  G
Sbjct:   174 KGRHCKKFYTEEGCPYGESCTFLHDEASRNRESVAISLGPGGYGSGGGGGSGGGSVGGGG 233

Query:   203 PP---VVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWT-QGQCPFGEKCHFAHGQSEL 258
                  VV G       G+   G   +KP  WKT++C KW   G CPFG KCHFAHG +EL
Sbjct:   234 SSSNVVVLGGGGGSGSGS---GIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL 290

Query:   259 QVIGGRTEGEAGNPSFISVKP 279
                GG    E G    +S  P
Sbjct:   291 HRFGGGLVEEEGKDG-VSPNP 310

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

TAIR|locus:2062476 AT2G35430 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 78/227 (34%), Positives = 104/227 (45%)

Query:   126 WQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYG-DRCNFLH--ED--- 179
             W     G  +   ++   +  +  K   K KLC KF  G  CPY    C+F H  E+   
Sbjct:    45 WAINSDGAESPSKKTRSSSSSEIGKSFFKTKLCFKFRAGT-CPYSASSCHFAHSAEELRL 103

Query:   180 ----PAKFRD---DSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKT 232
                 P  +++   ++ R RES A+S+G  G         N A+         +K   WKT
Sbjct:   104 PPPPPPNWQETVTEASRNRESFAVSLGPRG---------NVAQ--------TLKSPNWKT 146

Query:   233 KLCIKW-TQGQCPFGEKCHFAHGQSELQVIGGR-TEGEA--GNPSFISVKPQ-------- 280
             ++C KW T G CPFG  CHFAHG SEL   GG   EGE   G  + +  K +        
Sbjct:   147 RICNKWQTTGYCPFGSHCHFAHGPSELHTFGGGLVEGECKIGTSATLDTKQRGQVDTVTS 206

Query:   281 LV-PANDSSPTAVLPTLNKEGQGKQCLFKWKGPKKINRIYADWLDDM 326
             LV P   S  T+   T    G   Q   KWKGP KI+R+Y DW+DD+
Sbjct:   207 LVSPGVSSQRTSSAVTQKPNGVRTQR--KWKGPDKISRVYGDWIDDI 251

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

ZFIN|ZDB-GENE-030131-6366 zgc:162730 "zgc:162730" [Danio rerio (taxid:7955)]

 Score = 107 (42.7 bits), Expect = 4.8e-11, Sum P(3) = 4.8e-11
 Identities = 25/81 (30%), Positives = 37/81 (45%)

Query:   153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTT---GPPVVTGS 209
             +K + C+ FY    CPYG RC+F+HE+ +   + + R    S    G T    PP    S
Sbjct:   151 YKTQACRTFYQFGYCPYGSRCHFIHEEKSSLSEQNPRQLRQSVSFAGFTRSSSPPSSYES 210

Query:   210 CS-NQAEGNRPVGSNCVKPVY 229
              S  +A    P     + PV+
Sbjct:   211 LSFTRAPSVSPPPEEILSPVF 231

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

TAIR|locus:2099292 AT3G12130 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
 Identities = 22/49 (44%), Positives = 34/49 (69%)

Query:   214 AEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSELQVIG 262
             +EG    GSN      +KTK+C ++++G C FG++CHFAHG++EL+  G
Sbjct:   204 SEGKPHPGSN------FKTKICERFSKGNCTFGDRCHFAHGEAELRKSG 246

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

SGD|S000002558 CTH1 "Member of the CCCH zinc finger family" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 108 (43.1 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
 Identities = 18/63 (28%), Positives = 37/63 (58%)

Query:   230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQS-ELQVIGGRTEGEAGNPSFISVKPQLVPANDS 287
             ++TK CI W++ G CP+G++C F HG   ++++     +G + + +   +   L P+N+ 
Sbjct:   243 YRTKPCINWSKLGYCPYGKRCCFKHGDDKDVEIYQNANDGRSKDTALTPLPTSLAPSNND 302

Query:   288 SPT 290
             + T
Sbjct:   303 NIT 305

GO:0006879 "cellular iron ion homeostasis" evidence=IGI

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IC

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=IGI

GO:0003723 "RNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISS

UNIPROTKB|Q6S9E0 ZFP36 "Tristetraprolin" [Ovis aries (taxid:9940)]

 Score = 100 (40.3 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query:    87 TNIFFKTRLCAKFKH-GACRNGENCNFAHGMEDLRQP 122
             T+  +KT LC  F   G CR G  C FAHG+ +LRQP
Sbjct:    98 TSSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQP 134

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006402 "mRNA catabolic process" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

GO:0010494 "cytoplasmic stress granule" evidence=ISS

GO:0017091 "AU-rich element binding" evidence=ISS

GO:0032680 "regulation of tumor necrosis factor production" evidence=ISS

GO:0060213 "positive regulation of nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS

GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISS

GO:0071889 "14-3-3 protein binding" evidence=ISS

UNIPROTKB|P26651 ZFP36 "Tristetraprolin" [Homo sapiens (taxid:9606)]

 Score = 98 (39.6 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 18/32 (56%), Positives = 23/32 (71%)

Query:   227 PVYWKTKLCIK-WTQGQCPFGEKCHFAHGQSE 257
             P Y KT+LC K + QG+CP+G +CHF H  SE
Sbjct:   140 PKY-KTELCHKFYLQGRCPYGSRCHFIHNPSE 170

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=IEA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0050779 "RNA destabilization" evidence=IEA

GO:0017091 "AU-rich element binding" evidence=IMP;IDA

GO:0006402 "mRNA catabolic process" evidence=IDA

GO:0060213 "positive regulation of nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0019957 "C-C chemokine binding" evidence=IPI

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0019901 "protein kinase binding" evidence=IPI

GO:0006950 "response to stress" evidence=IDA

GO:0010494 "cytoplasmic stress granule" evidence=IDA

GO:0071889 "14-3-3 protein binding" evidence=IDA

GO:0032680 "regulation of tumor necrosis factor production" evidence=IDA

GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IDA

GO:1900153 "positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=ISS

GO:0035278 "negative regulation of translation involved in gene silencing by miRNA" evidence=ISS

GO:0003727 "single-stranded RNA binding" evidence=TAS

GO:0003729 "mRNA binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

DICTYBASE|DDB_G0285973 DDB_G0285973 "Butyrate response factor 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 104 (41.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 33/110 (30%), Positives = 45/110 (40%)

Query:   153 HKMKLCKKFYNGEECPYGDRCNFLH-EDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCS 211
             +K + CK FY+   CPYG RC F+H  DP    +         + S G+  PP  T + +
Sbjct:   234 YKTETCKTFYSIGSCPYGSRCRFIHTRDP----ELPIHLMSQLSTSSGSISPPNQTSNNN 289

Query:   212 NQA-EGNRPVGSNCVKPVYWKTKLCIKWTQGQCP-FGEKCHFAHGQSELQ 259
             N    GN    S   + +  KT +     Q   P      H    Q ELQ
Sbjct:   290 NNTTNGNNTPASFATEVLLSKTIVPQMIRQHSSPQLQTPLHILQQQKELQ 339

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:99180 Zfp36 "zinc finger protein 36" [Mus musculus (taxid:10090)]

 Score = 96 (38.9 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query:   227 PVYWKTKLCIK-WTQGQCPFGEKCHFAHGQSELQVIGGR 264
             P Y KT+LC K + QG+CP+G +CHF H  +E   + G+
Sbjct:   132 PKY-KTELCHKFYLQGRCPYGSRCHFIHNPTEDLALPGQ 169

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;IMP

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=IDA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0006402 "mRNA catabolic process" evidence=ISO

GO:0006950 "response to stress" evidence=ISO

GO:0007243 "intracellular protein kinase cascade" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010494 "cytoplasmic stress granule" evidence=ISO

GO:0017091 "AU-rich element binding" evidence=ISO;IDA

GO:0019901 "protein kinase binding" evidence=ISO

GO:0019957 "C-C chemokine binding" evidence=ISO

GO:0032680 "regulation of tumor necrosis factor production" evidence=ISO

GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=IDA

GO:0043488 "regulation of mRNA stability" evidence=IDA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IMP

GO:0050779 "RNA destabilization" evidence=IMP

GO:0060213 "positive regulation of nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO

GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO

GO:0071889 "14-3-3 protein binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LT81	C3H39_ARATH	No assigned EC number	0.5229	0.8520	0.7461	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00090375 hypothetical protein (342 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	338
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	4e-06
smart00356	27	smart00356, ZnF_C3H1, zinc finger	1e-05
smart00356	27	smart00356, ZnF_C3H1, zinc finger	1e-05
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	3e-05
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	8e-05
smart00356	27	smart00356, ZnF_C3H1, zinc finger	3e-04
COG5252	299	COG5252, COG5252, Uncharacterized conserved protei	0.003

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 13/27 (48%), Positives = 21/27 (77%), Gaps = 1/27 (3%)

Query: 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQ 255
           +KT+LC  +++ G C +G++C FAHGQ
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 91  FKTRLCAKFKHGACRNGENCNFAHGM 116
           +KT LC  FK G C  G+ C FAH +
Sbjct: 2   YKTELCKFFKRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 230 WKTKLCIKWTQGQCPFGEKCHFAHG 254
           +KT+LC  + +G CP G++C FAH 
Sbjct: 2   YKTELCKFFKRGYCPRGDRCKFAHP 26

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 39.8 bits (94), Expect = 3e-05
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 91  FKTRLCAKF-KHGACRNGENCNFAHGM 116
           +KT LC  F + G C+ G+ C FAHG 
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 38.7 bits (91), Expect = 8e-05
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 154 KMKLCKKFYNGEECPYGDRCNFLH 177
           K +LC+ F     C YGDRC F H
Sbjct: 2   KTELCRFFSRTGTCKYGDRCKFAH 25

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 154 KMKLCKKFYNGEECPYGDRCNFLHED 179
           K +LCK F  G  CP GDRC F H  
Sbjct: 3   KTELCKFFKRGY-CPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 10/114 (8%)

Query: 92  KTRLCAKFKHGACRNGENCNFAHGMEDLR--QPPPNWQELVGGGRAEEDRSSGGNWDDDQ 149
           KT +CA F +  C  G+ C FAHG E+ R  + P  + ++      EED   G     + 
Sbjct: 84  KTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRD---KEEDVPLGKRPWINT 140

Query: 150 KIIHKMKL----CKKFYNGEECPYG-DRCNFLHEDPAKFRDDSGRYRESSAISI 198
             + K  +      K+  G  CP G  RC+++H+ P  +     + ++S+ + I
Sbjct: 141 DRVCKFFIEAMESGKYGWGWTCPNGNMRCSYIHKLPDGYVLSRDKIKDSTQVEI 194

Length = 299

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	338
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	99.45
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.42
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.21
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	99.14
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	99.03
KOG1040	325	consensus Polyadenylation factor I complex, subuni	99.03
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	98.62
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	98.58
KOG1763	343	consensus Uncharacterized conserved protein, conta	98.48
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.47
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.4
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	98.27
smart00356	27	ZnF_C3H1 zinc finger.	98.14
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	98.14
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	98.04
KOG1040	325	consensus Polyadenylation factor I complex, subuni	98.02
smart00356	27	ZnF_C3H1 zinc finger.	97.96
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	97.92
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	97.87
KOG4791	667	consensus Uncharacterized conserved protein [Funct	97.61
KOG2333	614	consensus Uncharacterized conserved protein [Gener	97.29
KOG2333	614	consensus Uncharacterized conserved protein [Gener	96.39
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	96.37
KOG2185	486	consensus Predicted RNA-processing protein, contai	95.96
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.93
KOG4791	667	consensus Uncharacterized conserved protein [Funct	95.73
KOG2185	486	consensus Predicted RNA-processing protein, contai	95.72
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.55
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	95.02
COG5152	259	Uncharacterized conserved protein, contains RING a	94.77
COG5152	259	Uncharacterized conserved protein, contains RING a	93.72
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	90.44
KOG1763	343	consensus Uncharacterized conserved protein, conta	90.07
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	88.27
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	87.39
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	87.06
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	86.7
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	82.81
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	81.89

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.45  E-value=1.5e-13  Score=137.82  Aligned_cols=101  Identities=30%  Similarity=0.604  Sum_probs=85.2

Q ss_pred             ccccccccccccccCCCCCCCCccc-CCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCC
Q 019627           90 FFKTRLCAKFKHGACRNGENCNFAH-GMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECP  168 (338)
Q Consensus        90 ~~KT~lC~~f~~G~C~~G~~C~FaH-~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~  168 (338)
                      -||++.|..   +.|+.|..|.|+| +....|+.|.                         +..|....|..| .+|.|.
T Consensus       198 ~fKir~C~R---~~shDwteCPf~HpgEkARRRDPR-------------------------kyhYs~tpCPef-rkG~C~  248 (528)
T KOG1595|consen  198 SFKIRRCSR---PRSHDWTECPFAHPGEKARRRDPR-------------------------KYHYSSTPCPEF-RKGSCE  248 (528)
T ss_pred             eeeecccCC---ccCCCcccCCccCCCcccccCCcc-------------------------cccccCccCccc-ccCCCC
Confidence            479999954   5899999999999 6666666553                         236788999988 569999


Q ss_pred             CCCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccCCCCCC
Q 019627          169 YGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEK  248 (338)
Q Consensus       169 ~G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f~~G~C~~G~~  248 (338)
                      .||.|.|+|+..|.                                         ..+|..|||++|++-  |+|++ ..
T Consensus       249 rGD~CEyaHgvfEc-----------------------------------------wLHPa~YRT~~CkDg--~~C~R-rv  284 (528)
T KOG1595|consen  249 RGDSCEYAHGVFEC-----------------------------------------WLHPARYRTRKCKDG--GYCPR-RV  284 (528)
T ss_pred             CCCccccccceehh-----------------------------------------hcCHHHhccccccCC--CCCcc-ce
Confidence            99999999998763                                         356789999999997  99999 99


Q ss_pred             CccCCCccccccCCC
Q 019627          249 CHFAHGQSELQVIGG  263 (338)
Q Consensus       249 C~FaHg~~elr~~~~  263 (338)
                      |.|||..+|||....
T Consensus       285 CfFAH~~eqLR~l~~  299 (528)
T KOG1595|consen  285 CFFAHSPEQLRPLPP  299 (528)
T ss_pred             EeeecChHHhcccCC
Confidence            999999999998764

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.42  E-value=2.2e-13  Score=132.28  Aligned_cols=118  Identities=31%  Similarity=0.637  Sum_probs=87.7

Q ss_pred             ccccccc-cccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCC-CC
Q 019627           94 RLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPY-GD  171 (338)
Q Consensus        94 ~lC~~f~-~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~-G~  171 (338)
                      ..|.+|. ++.|.++..|+|.|...+.+.....                 ..+.......+|+.+|..|...|.|.| |+
T Consensus        87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~-----------------~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge  149 (332)
T KOG1677|consen   87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVR-----------------RSRGERKPERYKTPLCRSFRKSGTCKYRGE  149 (332)
T ss_pred             cccccccccCCCCCCCCCCccCcccccccCCcc-----------------ccccccCcccccCCcceeeecCccccccCc
Confidence            6799997 7999999999999998555543210                 001122334789999999999999999 99


Q ss_pred             CCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCccc-ccccCCCCCCCc
Q 019627          172 RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCH  250 (338)
Q Consensus       172 ~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f-~~G~C~~G~~C~  250 (338)
                      +|+|+|...+.....          ++             +.          ......|||++|.+| .+|.|+||.+|+
T Consensus       150 ~crfah~~~e~r~~~----------~~-------------~~----------~~~~~~~kt~lC~~f~~tG~C~yG~rC~  196 (332)
T KOG1677|consen  150 QCRFAHGLEELRLPS----------SE-------------NQ----------VGNPPKYKTKLCPKFQKTGLCKYGSRCR  196 (332)
T ss_pred             hhhhcCCcccccccc----------cc-------------hh----------hcCCCCCCCcCCCccccCCCCCCCCcCe
Confidence            999999976532100          00             00          112357999999999 789999999999


Q ss_pred             cCCCccccccC
Q 019627          251 FAHGQSELQVI  261 (338)
Q Consensus       251 FaHg~~elr~~  261 (338)
                      |+|+..+.+..
T Consensus       197 F~H~~~~~~~~  207 (332)
T KOG1677|consen  197 FIHGEPEDRAS  207 (332)
T ss_pred             ecCCCcccccc
Confidence            99999877754

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.21  E-value=8e-12  Score=121.36  Aligned_cols=82  Identities=39%  Similarity=0.769  Sum_probs=65.4

Q ss_pred             CCCCcccccccccccccc-cccCCC-CCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhccccccccc
Q 019627           83 NKGITNIFFKTRLCAKFK-HGACRN-GENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKK  160 (338)
Q Consensus        83 ~~~~~~~~~KT~lC~~f~-~G~C~~-G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~  160 (338)
                      ........|||.+|.+|. .|.|+| |++|+|+|+.++++.+.    .+.               .......|||++|.+
T Consensus       122 ~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~----~~~---------------~~~~~~~~kt~lC~~  182 (332)
T KOG1677|consen  122 RGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS----SEN---------------QVGNPPKYKTKLCPK  182 (332)
T ss_pred             ccccCcccccCCcceeeecCccccccCchhhhcCCcccccccc----cch---------------hhcCCCCCCCcCCCc
Confidence            344555689999999998 899999 99999999999998531    000               011235899999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCccc
Q 019627          161 FYNGEECPYGDRCNFLHEDPAKF  183 (338)
Q Consensus       161 f~~~G~C~~G~~C~F~H~~~e~~  183 (338)
                      |..+|.|+||.+|+|+|...+..
T Consensus       183 f~~tG~C~yG~rC~F~H~~~~~~  205 (332)
T KOG1677|consen  183 FQKTGLCKYGSRCRFIHGEPEDR  205 (332)
T ss_pred             cccCCCCCCCCcCeecCCCcccc
Confidence            99999999999999999977543

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=99.14  E-value=3.3e-11  Score=113.53  Aligned_cols=116  Identities=27%  Similarity=0.549  Sum_probs=92.4

Q ss_pred             Cccccccc--ccccccc-cccCCC---CCCCCcc---cCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhccccc
Q 019627           86 ITNIFFKT--RLCAKFK-HGACRN---GENCNFA---HGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMK  156 (338)
Q Consensus        86 ~~~~~~KT--~lC~~f~-~G~C~~---G~~C~Fa---H~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~  156 (338)
                      .....|||  .+|.-|. .|+|.+   |+.|+|+   |++.++..                         +..+..|||+
T Consensus       221 ~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~-------------------------k~k~~~frTe  275 (351)
T COG5063         221 QNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKS-------------------------KKKKQNFRTE  275 (351)
T ss_pred             ccchhhcCCHHHhhccCcCCCCccccccccccccccccccccccc-------------------------cccccccccC
Confidence            34457899  9999996 899999   9999999   99887742                         1234579999


Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCc
Q 019627          157 LCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCI  236 (338)
Q Consensus       157 lCk~f~~~G~C~~G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~  236 (338)
                      +|.+|..-|.|+||.+|.|.|++.+.+...    ++.                                 ...|+...|+
T Consensus       276 Pcinwe~sGyc~yg~Rc~F~hgd~~~ie~~----~~~---------------------------------~~~y~~~~cr  318 (351)
T COG5063         276 PCINWEKSGYCPYGLRCCFKHGDDSDIEMY----EEA---------------------------------SLGYLDGPCR  318 (351)
T ss_pred             CccchhhcccCccccccccccCChhhcccc----ccc---------------------------------cccccccccc
Confidence            999999999999999999999987754321    111                                 1246667799


Q ss_pred             cc-ccccCCCCCCCccCCCccccccCCC
Q 019627          237 KW-TQGQCPFGEKCHFAHGQSELQVIGG  263 (338)
Q Consensus       237 ~f-~~G~C~~G~~C~FaHg~~elr~~~~  263 (338)
                      -+ ..|.|+.|-+|.|.|....+....+
T Consensus       319 t~~~~g~~p~g~~~c~~~dkkn~~~s~~  346 (351)
T COG5063         319 TRAKGGAFPSGGAVCKSFDKKNLDFSVK  346 (351)
T ss_pred             cccccCccCCCCchhhccccchhhhhhh
Confidence            99 8999999999999999887765543

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=99.03  E-value=8.1e-10  Score=104.29  Aligned_cols=133  Identities=25%  Similarity=0.449  Sum_probs=89.8

Q ss_pred             cccccccccccc-cccCCCCCCCCcccCCCCcCCCCCC-----------cccccCCC-----------CCc------ccC
Q 019627           89 IFFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPN-----------WQELVGGG-----------RAE------EDR  139 (338)
Q Consensus        89 ~~~KT~lC~~f~-~G~C~~G~~C~FaH~~~e~r~pp~~-----------~~el~~~~-----------r~~------~~~  139 (338)
                      .+|||.+|..-. .+.|+++++|.|+|.-...+.....           |.+-..++           .++      .+.
T Consensus       111 g~~kt~~l~ss~~~~~~~~p~~n~fahs~~issl~~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~~q~l~~rk  190 (351)
T COG5063         111 GLYKTEMLRSSTEIPYCRYPDKNPFAHSKAISSLAQTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDINLQPLSQRK  190 (351)
T ss_pred             ccccchhhhccccccccccCCCCcCCCccccccccccCccccccceeEEecCCccccccccccccccccccCcchhhccC
Confidence            478999998765 6899999999999987766543221           11111111           000      000


Q ss_pred             C----------CCCCC------------Ccchhhcccc--cccccccCCCCCCC---CCCCCCC---CCCCccccCCCcc
Q 019627          140 S----------SGGNW------------DDDQKIIHKM--KLCKKFYNGEECPY---GDRCNFL---HEDPAKFRDDSGR  189 (338)
Q Consensus       140 ~----------~~~~~------------~~~~~~~~Kt--~lCk~f~~~G~C~~---G~~C~F~---H~~~e~~r~~s~~  189 (338)
                      +          .+...            .+..+.+|++  .+|..|...|.|++   |+.|.|+   |+..+-.      
T Consensus       191 pks~~~~~s~t~~kes~a~P~~~~~~~~~e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~------  264 (351)
T COG5063         191 PKSGKNCTSYTLGKESDAHPHDELIYQKQEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELK------  264 (351)
T ss_pred             cccCcCccccccccccccCchhhhhhhhhhccchhhcCCHHHhhccCcCCCCcccccccccccccccccccccc------
Confidence            0          00000            1123457888  89999999999999   9999999   8853310      


Q ss_pred             cccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCccc-ccccCCCCCCCccCCCcccccc
Q 019627          190 YRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSELQV  260 (338)
Q Consensus       190 ~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f-~~G~C~~G~~C~FaHg~~elr~  260 (338)
                                                +       ......|+|+.|..| ..|+|++|.+|.|+||+.++..
T Consensus       265 --------------------------~-------k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie  303 (351)
T COG5063         265 --------------------------S-------KKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIE  303 (351)
T ss_pred             --------------------------c-------cccccccccCCccchhhcccCccccccccccCChhhcc
Confidence                                      0       012246899999999 9999999999999999976543

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=99.03  E-value=1.6e-10  Score=111.79  Aligned_cols=113  Identities=31%  Similarity=0.612  Sum_probs=81.2

Q ss_pred             ccccccccccccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCC
Q 019627           90 FFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPY  169 (338)
Q Consensus        90 ~~KT~lC~~f~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~  169 (338)
                      .+++++|++|+.|.|..||.|.|+|.. ++.                                 |+..|.+|+..|.|..
T Consensus        74 ~~~~~vcK~~l~glC~kgD~C~Flhe~-~~~---------------------------------k~rec~ff~~~g~c~~  119 (325)
T KOG1040|consen   74 SRGKVVCKHWLRGLCKKGDQCEFLHEY-DLT---------------------------------KMRECKFFSLFGECTN  119 (325)
T ss_pred             cCCceeehhhhhhhhhccCcCcchhhh-hhc---------------------------------cccccccccccccccc
Confidence            678999999999999999999999988 443                                 3457999999999999


Q ss_pred             CCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccCCCCCC-
Q 019627          170 GDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEK-  248 (338)
Q Consensus       170 G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f~~G~C~~G~~-  248 (338)
                      +..|.|.|+++......+..+..      |.                .+.  ....+-..++..+|..|..|.|+-|.. 
T Consensus       120 ~~~c~y~h~dpqt~~k~c~~~~~------g~----------------c~~--g~~c~~~h~~~~~c~~y~~gfC~~g~q~  175 (325)
T KOG1040|consen  120 GKDCPYLHGDPQTAIKKCKWYKE------GF----------------CRG--GPSCKKRHERKVLCPPYNAGFCPKGPQR  175 (325)
T ss_pred             ccCCcccCCChhhhhhccchhhh------cc----------------CCC--cchhhhhhhcccCCCchhhhhccCCCCc
Confidence            99999999985321111111110      00                000  001112234458899999999999988 


Q ss_pred             CccCCCcccccc
Q 019627          249 CHFAHGQSELQV  260 (338)
Q Consensus       249 C~FaHg~~elr~  260 (338)
                      |-+.|....+..
T Consensus       176 c~~~hp~~~~~~  187 (325)
T KOG1040|consen  176 CDMLHPEFQQPP  187 (325)
T ss_pred             ccccCCCCCCCh
Confidence            999999977665

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=98.62  E-value=5.9e-07  Score=85.51  Aligned_cols=89  Identities=28%  Similarity=0.703  Sum_probs=71.5

Q ss_pred             ccccccccccccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCC
Q 019627           90 FFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPY  169 (338)
Q Consensus        90 ~~KT~lC~~f~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~  169 (338)
                      .+..++|++|..|.|+.|..|.|+|+..-++.                                -+..|+.|...|.|..
T Consensus       101 ~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s--------------------------------~~~~c~~Fs~~G~cs~  148 (285)
T COG5084         101 LSSSVVCKFFLRGLCKSGFSCEFLHEYDLRSS--------------------------------QGPPCRSFSLKGSCSS  148 (285)
T ss_pred             ccCCcccchhccccCcCCCccccccCCCcccc--------------------------------cCCCcccccccceecc
Confidence            57889999999999999999999999875531                                1347998889999999


Q ss_pred             CCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccc---cccCCCC
Q 019627          170 GDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWT---QGQCPFG  246 (338)
Q Consensus       170 G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f~---~G~C~~G  246 (338)
                      |..|.|.|.++...                                                ...|.+|.   .+.|+.|
T Consensus       149 g~~c~~~h~dp~~~------------------------------------------------~~~~~~~~~~~~~f~p~g  180 (285)
T COG5084         149 GPSCGYSHIDPDSF------------------------------------------------AGNCDQYSGATYGFCPLG  180 (285)
T ss_pred             CCCCCccccCcccc------------------------------------------------cccccccCcccccccCCC
Confidence            99999999985421                                                11255554   7899999


Q ss_pred             CCCccCCCcccc
Q 019627          247 EKCHFAHGQSEL  258 (338)
Q Consensus       247 ~~C~FaHg~~el  258 (338)
                      ..|+|.|+...+
T Consensus       181 ~~c~~~H~~~~~  192 (285)
T COG5084         181 ASCKFSHTLKRV  192 (285)
T ss_pred             Cccccccccccc
Confidence            999999988633

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.58  E-value=6.3e-08  Score=97.84  Aligned_cols=134  Identities=30%  Similarity=0.560  Sum_probs=90.4

Q ss_pred             CcccccccccccccccccC-CCCCCCCcccCCCCcCCCCCCcccccC--CCCCcc-----c----C-CCC-------CCC
Q 019627           86 ITNIFFKTRLCAKFKHGAC-RNGENCNFAHGMEDLRQPPPNWQELVG--GGRAEE-----D----R-SSG-------GNW  145 (338)
Q Consensus        86 ~~~~~~KT~lC~~f~~G~C-~~G~~C~FaH~~~e~r~pp~~~~el~~--~~r~~~-----~----~-~~~-------~~~  145 (338)
                      +.-.+|||-.|..=..|.| ..+-.|.|+|....+|.+.....++.+  -+.+++     .    . +.+       +.|
T Consensus       110 ~hL~~~k~~~~~tda~g~~~~~v~~~~~~~~~~~~r~~~~~l~e~~~~~~~~~~e~~~~~~~~~~~y~~Dp~~pdi~~~y  189 (528)
T KOG1595|consen  110 YHLRYYKTLPCVTDARGNCVKNVLHCAFAHGPNDLRPPVEDLLELQGGSGLPDDEPEVESKLDVTEYPEDPSWPDINGIY  189 (528)
T ss_pred             EeccccccccCccccCCCcccCcccccccCCccccccHHHHHHhcccccCccCCCcccccccccccccCCCCcccccccc
Confidence            3445789999985558999 669999999999999877544444420  011110     0    0 112       233


Q ss_pred             Ccchh--hcccccccccccCCCCCCCCCCCCCCC-CCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 019627          146 DDDQK--IIHKMKLCKKFYNGEECPYGDRCNFLH-EDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGS  222 (338)
Q Consensus       146 ~~~~~--~~~Kt~lCk~f~~~G~C~~G~~C~F~H-~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~  222 (338)
                      ..++.  ..||++.|.    .+.|..+-.|.|+| +.....|+.    |                               
T Consensus       190 s~DeFrMy~fKir~C~----R~~shDwteCPf~HpgEkARRRDP----R-------------------------------  230 (528)
T KOG1595|consen  190 SSDEFRMYSFKIRRCS----RPRSHDWTECPFAHPGEKARRRDP----R-------------------------------  230 (528)
T ss_pred             cccceEEEeeeecccC----CccCCCcccCCccCCCcccccCCc----c-------------------------------
Confidence            33443  367999996    45899999999999 544433321    1                               


Q ss_pred             CCCCCCccccccCcccccccCCCCCCCccCCCccccccCC
Q 019627          223 NCVKPVYWKTKLCIKWTQGQCPFGEKCHFAHGQSELQVIG  262 (338)
Q Consensus       223 ~~~~~~~~Kt~lC~~f~~G~C~~G~~C~FaHg~~elr~~~  262 (338)
                          .=.|.-..|+.|.+|.|.+||.|.|+||.-|..-+.
T Consensus       231 ----kyhYs~tpCPefrkG~C~rGD~CEyaHgvfEcwLHP  266 (528)
T KOG1595|consen  231 ----KYHYSSTPCPEFRKGSCERGDSCEYAHGVFECWLHP  266 (528)
T ss_pred             ----cccccCccCcccccCCCCCCCccccccceehhhcCH
Confidence                113556679999999999999999999998876653

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=98.48  E-value=1.1e-08  Score=96.41  Aligned_cols=98  Identities=30%  Similarity=0.638  Sum_probs=65.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCC
Q 019627           64 SATYPPMNPRMNPSMNLPINKGITNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGG  143 (338)
Q Consensus        64 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~KT~lC~~f~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~  143 (338)
                      .++-| ..+..+..+.|           |+.+|.+|.+|+|..|+.|+|+|++...|..+.  .+|+...|++       
T Consensus        75 ~lfkp-~~qkv~~gvDP-----------KSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK--~dly~d~rde-------  133 (343)
T KOG1763|consen   75 ELFKP-ADQKVPKGVDP-----------KSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEK--IDLYPDTRDE-------  133 (343)
T ss_pred             Hhccc-cccccccCCCc-----------hHHHHHHHhccCCCCCCcccccchHHHhhhccc--hhccccchhh-------
Confidence            34444 55555555544           999999999999999999999999998887643  2333333333       


Q ss_pred             CCCcch--------hhccc---ccccccccCC------C---CCCCCC-CCCCCCCCCcc
Q 019627          144 NWDDDQ--------KIIHK---MKLCKKFYNG------E---ECPYGD-RCNFLHEDPAK  182 (338)
Q Consensus       144 ~~~~~~--------~~~~K---t~lCk~f~~~------G---~C~~G~-~C~F~H~~~e~  182 (338)
                      .|++..        +...+   ..+|++|...      |   .|+.|. .|.|.|..++.
T Consensus       134 mWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE~~kYGWfW~CPnGg~~C~YrHaLP~G  193 (343)
T KOG1763|consen  134 MWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVENGKYGWFWECPNGGDKCIYRHALPEG  193 (343)
T ss_pred             hhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCCccceeECCCCCCeeeeeecCCcc
Confidence            366431        11111   2479977441      2   399885 89999998875

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.47  E-value=3.2e-08  Score=61.65  Aligned_cols=25  Identities=52%  Similarity=1.185  Sum_probs=20.4

Q ss_pred             cccccccccc-cccCCCCCCCCcccC
Q 019627           91 FKTRLCAKFK-HGACRNGENCNFAHG  115 (338)
Q Consensus        91 ~KT~lC~~f~-~G~C~~G~~C~FaH~  115 (338)
                      |||++|++|. +|.|++|++|+|+|+
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             CccccChhhccCCccCCCCCcCccCC
Confidence            6899999998 599999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.40  E-value=5.9e-08  Score=60.45  Aligned_cols=26  Identities=62%  Similarity=1.372  Sum_probs=20.7

Q ss_pred             cccccCccc-ccccCCCCCCCccCCCc
Q 019627          230 WKTKLCIKW-TQGQCPFGEKCHFAHGQ  255 (338)
Q Consensus       230 ~Kt~lC~~f-~~G~C~~G~~C~FaHg~  255 (338)
                      ||+++|++| ..|.|++|++|+|+|+.
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            578999999 77999999999999974

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=98.27  E-value=4.2e-07  Score=83.20  Aligned_cols=105  Identities=22%  Similarity=0.508  Sum_probs=65.1

Q ss_pred             cccccccc-cccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCC
Q 019627           93 TRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGD  171 (338)
Q Consensus        93 T~lC~~f~-~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~G~  171 (338)
                      .+.|++|. +|.|.+|..|+|.|....                                    ..+|.+| ..|.|...+
T Consensus       206 avycryynangicgkgaacrfvheptr------------------------------------kticpkf-lngrcnkae  248 (377)
T KOG1492|consen  206 AVYCRYYNANGICGKGAACRFVHEPTR------------------------------------KTICPKF-LNGRCNKAE  248 (377)
T ss_pred             eeEEEEecCCCcccCCceeeeeccccc------------------------------------cccChHH-hcCccCchh
Confidence            45799998 899999999999996541                                    1368777 457888888


Q ss_pred             CCCCCCCCCccccCCCcccccccccccCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCccccccCccc-ccccCCCCCCC
Q 019627          172 RCNFLHEDPAKFRDDSGRYRESSAISIGTTG-PPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKC  249 (338)
Q Consensus       172 ~C~F~H~~~e~~r~~s~~~res~~~svg~~~-~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f-~~G~C~~G~~C  249 (338)
                      .|.++|+.....-.++.      -+-+|..- |.+.+      +         +.+- .....+|..| .-|+|..|..|
T Consensus       249 dcnlsheldprripacr------yfllgkcnnpncry------v---------hihy-senapicfefakygfcelgtsc  306 (377)
T KOG1492|consen  249 DCNLSHELDPRRIPACR------YFLLGKCNNPNCRY------V---------HIHY-SENAPICFEFAKYGFCELGTSC  306 (377)
T ss_pred             cCCcccccCccccchhh------hhhhccCCCCCceE------E---------EEee-cCCCceeeeehhcceecccccc
Confidence            88888886543211111      11111100 00000      0         0000 0124579999 88999999999


Q ss_pred             ccCCCcc
Q 019627          250 HFAHGQS  256 (338)
Q Consensus       250 ~FaHg~~  256 (338)
                      .-.|-..
T Consensus       307 knqhilq  313 (377)
T KOG1492|consen  307 KNQHILQ  313 (377)
T ss_pred             ccceeee
Confidence            9888653

>smart00356 ZnF_C3H1 zinc finger

Probab=98.14  E-value=1.2e-06  Score=53.87  Aligned_cols=26  Identities=50%  Similarity=1.100  Sum_probs=24.0

Q ss_pred             cccccccccccccCCCCCCCCcccCC
Q 019627           91 FKTRLCAKFKHGACRNGENCNFAHGM  116 (338)
Q Consensus        91 ~KT~lC~~f~~G~C~~G~~C~FaH~~  116 (338)
                      +|+.+|++|++|.|.+|++|+|+|+.
T Consensus         2 ~k~~~C~~~~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFFKRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCccCCCCCCCCCcCCCCcC
Confidence            58899999999999999999999973

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=98.14  E-value=1.7e-06  Score=79.17  Aligned_cols=105  Identities=23%  Similarity=0.537  Sum_probs=69.6

Q ss_pred             ccccccccccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCC
Q 019627           92 KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGD  171 (338)
Q Consensus        92 KT~lC~~f~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~G~  171 (338)
                      +..+|.+|++|.|.+.+.|..+|.++..|-|                                  .|++| .-|.|. ..
T Consensus       232 rkticpkflngrcnkaedcnlsheldprrip----------------------------------acryf-llgkcn-np  275 (377)
T KOG1492|consen  232 RKTICPKFLNGRCNKAEDCNLSHELDPRRIP----------------------------------ACRYF-LLGKCN-NP  275 (377)
T ss_pred             ccccChHHhcCccCchhcCCcccccCccccc----------------------------------hhhhh-hhccCC-CC
Confidence            4468999999999999999999999877654                                  68855 567898 58


Q ss_pred             CCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCccc-ccccCCCCCCCc
Q 019627          172 RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCH  250 (338)
Q Consensus       172 ~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f-~~G~C~~G~~C~  250 (338)
                      +|+|.|..-+.-..-+-.+..-....+|++                         ......-.|.+| +.|.|.+ ..|.
T Consensus       276 ncryvhihysenapicfefakygfcelgts-------------------------cknqhilqctdyamfgscnn-pqcs  329 (377)
T KOG1492|consen  276 NCRYVHIHYSENAPICFEFAKYGFCELGTS-------------------------CKNQHILQCTDYAMFGSCNN-PQCS  329 (377)
T ss_pred             CceEEEEeecCCCceeeeehhcceeccccc-------------------------cccceeeeecchhhhcCCCC-Ccce
Confidence            999999854321111111111101111110                         112233459999 9999988 8999


Q ss_pred             cCCCcccc
Q 019627          251 FAHGQSEL  258 (338)
Q Consensus       251 FaHg~~el  258 (338)
                      ..||....
T Consensus       330 lyhgavsa  337 (377)
T KOG1492|consen  330 LYHGAVSA  337 (377)
T ss_pred             eecceecc
Confidence            99997543

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=98.04  E-value=5.9e-07  Score=82.47  Aligned_cols=83  Identities=36%  Similarity=0.791  Sum_probs=58.5

Q ss_pred             ccccccccccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCccc-CCCCC-CCCcchhhcccccccccccC---CC-
Q 019627           92 KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEED-RSSGG-NWDDDQKIIHKMKLCKKFYN---GE-  165 (338)
Q Consensus        92 KT~lC~~f~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~-~~~~~-~~~~~~~~~~Kt~lCk~f~~---~G-  165 (338)
                      |+.+|..|..+.|..|+.|+|+|+.++.|....  .+|+..+|+.+. -+++. .|      +..-++|++|..   .| 
T Consensus        84 K~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK--~DLYsDvRd~~ed~pl~krP~------intd~VCkffieA~e~Gk  155 (299)
T COG5252          84 KTVVCALFLNKTCAKGDACKFAHGKEEARKTEK--PDLYSDVRDKEEDVPLGKRPW------INTDRVCKFFIEAMESGK  155 (299)
T ss_pred             hhHHHHHhccCccccCchhhhhcchHHHhhhcc--cchhhhhhhhhccCCcccCCC------CChhHHHHHHHHHHhcCC
Confidence            999999999999999999999999999887532  244455555432 23221 12      112357987743   12 


Q ss_pred             -----CCCCC-CCCCCCCCCCcc
Q 019627          166 -----ECPYG-DRCNFLHEDPAK  182 (338)
Q Consensus       166 -----~C~~G-~~C~F~H~~~e~  182 (338)
                           .|++| .+|.|.|..++.
T Consensus       156 Ygw~W~CPng~~~C~y~H~Lp~G  178 (299)
T COG5252         156 YGWGWTCPNGNMRCSYIHKLPDG  178 (299)
T ss_pred             ccceeeCCCCCceeeeeeccCcc
Confidence                 39988 689999998874

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=98.02  E-value=3.8e-06  Score=81.63  Aligned_cols=115  Identities=26%  Similarity=0.419  Sum_probs=73.2

Q ss_pred             cccccccc--ccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCC
Q 019627           94 RLCAKFKH--GACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGD  171 (338)
Q Consensus        94 ~lC~~f~~--G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~G~  171 (338)
                      ..|.++..  -.|.+|..|.+.|.....                                ..++.+|++| ..|.|..|+
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~vcK~~-l~glC~kgD   92 (325)
T KOG1040|consen   46 ATCEFNESREKPCERGPICPKSHNDVSD--------------------------------SRGKVVCKHW-LRGLCKKGD   92 (325)
T ss_pred             chhcccccCCCCccCCCCCccccCCccc--------------------------------cCCceeehhh-hhhhhhccC
Confidence            45887765  679999999999976531                                2345799866 678999999


Q ss_pred             CCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccCCCCCCCcc
Q 019627          172 RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHF  251 (338)
Q Consensus       172 ~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f~~G~C~~G~~C~F  251 (338)
                      .|.|+|+. +..     +.++...+++.        |...|.-+=  +.-  +.. ...+.++|+.|..|+|+.|+.|++
T Consensus        93 ~C~Flhe~-~~~-----k~rec~ff~~~--------g~c~~~~~c--~y~--h~d-pqt~~k~c~~~~~g~c~~g~~c~~  153 (325)
T KOG1040|consen   93 QCEFLHEY-DLT-----KMRECKFFSLF--------GECTNGKDC--PYL--HGD-PQTAIKKCKWYKEGFCRGGPSCKK  153 (325)
T ss_pred             cCcchhhh-hhc-----ccccccccccc--------cccccccCC--ccc--CCC-hhhhhhccchhhhccCCCcchhhh
Confidence            99999986 211     12333333221        112221000  000  001 134566899999999999999999


Q ss_pred             CCCcccccc
Q 019627          252 AHGQSELQV  260 (338)
Q Consensus       252 aHg~~elr~  260 (338)
                      .|....+-.
T Consensus       154 ~h~~~~~c~  162 (325)
T KOG1040|consen  154 RHERKVLCP  162 (325)
T ss_pred             hhhcccCCC
Confidence            998874433

>smart00356 ZnF_C3H1 zinc finger

Probab=97.96  E-value=4.8e-06  Score=51.15  Aligned_cols=26  Identities=46%  Similarity=1.174  Sum_probs=23.4

Q ss_pred             cccccCcccccccCCCCCCCccCCCc
Q 019627          230 WKTKLCIKWTQGQCPFGEKCHFAHGQ  255 (338)
Q Consensus       230 ~Kt~lC~~f~~G~C~~G~~C~FaHg~  255 (338)
                      +|+.+|++|.+|.|.+|++|+|+|..
T Consensus         2 ~k~~~C~~~~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFFKRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCccCCCCCCCCCcCCCCcC
Confidence            46778999999999999999999963

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=97.92  E-value=7.2e-06  Score=78.76  Aligned_cols=63  Identities=21%  Similarity=0.567  Sum_probs=47.8

Q ss_pred             ccccccccccccccccCCCCCC-CCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCC
Q 019627           88 NIFFKTRLCAKFKHGACRNGEN-CNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEE  166 (338)
Q Consensus        88 ~~~~KT~lC~~f~~G~C~~G~~-C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~  166 (338)
                      ..+..-++|+.|+.|+|.+|+. |+|+|......            |                 .+.+...|..| .+|.
T Consensus        32 ~~wl~~eVCReF~rn~C~R~d~~CkfaHP~~~~~------------V-----------------~~g~v~aC~Ds-~kgr   81 (331)
T KOG2494|consen   32 TKWLTLEVCREFLRNTCSRGDRECKFAHPPKNCQ------------V-----------------SNGRVIACFDS-QKGR   81 (331)
T ss_pred             cchhHHHHHHHHHhccccCCCccccccCCCCCCC------------c-----------------cCCeEEEEecc-ccCc
Confidence            3456778999999999999999 99999766321            1                 12345689755 6789


Q ss_pred             CCCCCCCCCCCCCCc
Q 019627          167 CPYGDRCNFLHEDPA  181 (338)
Q Consensus       167 C~~G~~C~F~H~~~e  181 (338)
                      |.+ ++|+|+|.-..
T Consensus        82 CsR-~nCkylHpp~h   95 (331)
T KOG2494|consen   82 CSR-ENCKYLHPPQH   95 (331)
T ss_pred             cCc-ccceecCCChh
Confidence            996 77999998554

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=97.87  E-value=5.1e-06  Score=79.78  Aligned_cols=61  Identities=26%  Similarity=0.660  Sum_probs=46.2

Q ss_pred             ccccccccCCCCCCCCCC-CCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 019627          155 MKLCKKFYNGEECPYGDR-CNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTK  233 (338)
Q Consensus       155 t~lCk~f~~~G~C~~G~~-C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~  233 (338)
                      .++||.| ..+.|.+|++ |+|+|.... ..                                          ...-+-.
T Consensus        37 ~eVCReF-~rn~C~R~d~~CkfaHP~~~-~~------------------------------------------V~~g~v~   72 (331)
T KOG2494|consen   37 LEVCREF-LRNTCSRGDRECKFAHPPKN-CQ------------------------------------------VSNGRVI   72 (331)
T ss_pred             HHHHHHH-HhccccCCCccccccCCCCC-CC------------------------------------------ccCCeEE
Confidence            4689988 5789999999 999998531 00                                          0011233


Q ss_pred             cCcccccccCCCCCCCccCCCcccccc
Q 019627          234 LCIKWTQGQCPFGEKCHFAHGQSELQV  260 (338)
Q Consensus       234 lC~~f~~G~C~~G~~C~FaHg~~elr~  260 (338)
                      .|.+|++|.|.+ ++|+|+|...+++.
T Consensus        73 aC~Ds~kgrCsR-~nCkylHpp~hlkd   98 (331)
T KOG2494|consen   73 ACFDSQKGRCSR-ENCKYLHPPQHLKD   98 (331)
T ss_pred             EEeccccCccCc-ccceecCCChhhhh
Confidence            599999999999 88999999987665

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=3.8e-05  Score=76.88  Aligned_cols=87  Identities=24%  Similarity=0.482  Sum_probs=64.9

Q ss_pred             ccccccccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCCCC
Q 019627           94 RLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDRC  173 (338)
Q Consensus        94 ~lC~~f~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~G~~C  173 (338)
                      ..|-+|....|++++.|.|.|...-+.-                                 ...|.+|...-.|..  .|
T Consensus         4 ~dcyff~ys~cKk~d~c~~rh~E~al~n---------------------------------~t~C~~w~~~~~C~k--~C   48 (667)
T KOG4791|consen    4 EDCYFFFYSTCKKGDSCPFRHCEAALGN---------------------------------ETVCTLWQEGRCCRK--VC   48 (667)
T ss_pred             ccchhhhhhhhhccCcCcchhhHHHhcC---------------------------------cchhhhhhhcCcccc--cc
Confidence            3599999999999999999998765521                                 247998877766664  89


Q ss_pred             CCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCccccccc-CCCCCCCccC
Q 019627          174 NFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQ-CPFGEKCHFA  252 (338)
Q Consensus       174 ~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f~~G~-C~~G~~C~Fa  252 (338)
                      .|.|......                                              .....|.+|.+|. |.. ++|-|.
T Consensus        49 ~YRHSe~~~k----------------------------------------------r~e~~CYwe~~p~gC~k-~~CgfR   81 (667)
T KOG4791|consen   49 RYRHSEIDKK----------------------------------------------RSEIPCYWENQPTGCQK-LNCGFR   81 (667)
T ss_pred             cchhhHHhhh----------------------------------------------cCcccceeecCCCccCC-Cccccc
Confidence            9999864321                                              1234698887777 998 999999


Q ss_pred             CCccccccCC
Q 019627          253 HGQSELQVIG  262 (338)
Q Consensus       253 Hg~~elr~~~  262 (338)
                      |...-|..-.
T Consensus        82 H~~pPLkg~l   91 (667)
T KOG4791|consen   82 HNRPPLKGVL   91 (667)
T ss_pred             cCCCchhhhc
Confidence            9665555443

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=97.29  E-value=0.0001  Score=74.39  Aligned_cols=64  Identities=34%  Similarity=0.831  Sum_probs=45.2

Q ss_pred             cccccccccCC--CCCCCCCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 019627          154 KMKLCKKFYNG--EECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK  231 (338)
Q Consensus       154 Kt~lCk~f~~~--G~C~~G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~K  231 (338)
                      +..+|.....+  ..|.||++|+|.|+....+....               +           +         .      
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~---------------~-----------D---------i------  113 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKA---------------P-----------D---------I------  113 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhccC---------------c-----------c---------c------
Confidence            35689877776  57999999999999754332110               0           0         0      


Q ss_pred             cccCccc-ccccCCCCCCCcc--CCCcccc
Q 019627          232 TKLCIKW-TQGQCPFGEKCHF--AHGQSEL  258 (338)
Q Consensus       232 t~lC~~f-~~G~C~~G~~C~F--aHg~~el  258 (338)
                      -.-|..| ..|.|++|-+|+|  +|-+.+-
T Consensus       114 g~~Cp~f~s~G~Cp~G~~CRFl~aHld~~g  143 (614)
T KOG2333|consen  114 GPSCPVFESLGFCPYGFKCRFLGAHLDIEG  143 (614)
T ss_pred             CCccceeeccccCCccceeehhhcccCccc
Confidence            0239999 9999999999999  4555443

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=96.39  E-value=0.0011  Score=67.11  Aligned_cols=59  Identities=36%  Similarity=0.780  Sum_probs=45.0

Q ss_pred             ccccccccccc---cCCCCCCCCcccCCCCcCCC-CCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCC
Q 019627           92 KTRLCAKFKHG---ACRNGENCNFAHGMEDLRQP-PPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEEC  167 (338)
Q Consensus        92 KT~lC~~f~~G---~C~~G~~C~FaH~~~e~r~p-p~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C  167 (338)
                      +.+||.....|   .|.+|++|+|.|+++..-.. ++                            .-...|..|...|.|
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~----------------------------Dig~~Cp~f~s~G~C  126 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAP----------------------------DIGPSCPVFESLGFC  126 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhccCc----------------------------ccCCccceeeccccC
Confidence            56799998755   89999999999998754211 00                            011369989889999


Q ss_pred             CCCCCCCCCCC
Q 019627          168 PYGDRCNFLHE  178 (338)
Q Consensus       168 ~~G~~C~F~H~  178 (338)
                      +||-.|+|+-.
T Consensus       127 p~G~~CRFl~a  137 (614)
T KOG2333|consen  127 PYGFKCRFLGA  137 (614)
T ss_pred             Cccceeehhhc
Confidence            99999999754

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=96.37  E-value=0.0072  Score=57.90  Aligned_cols=54  Identities=28%  Similarity=0.632  Sum_probs=41.6

Q ss_pred             ccccccc-ccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccC--CCCCCC
Q 019627           93 TRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYN--GEECPY  169 (338)
Q Consensus        93 T~lC~~f-~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~--~G~C~~  169 (338)
                      ...|++| ..|.|..|..|.+.|.......                                  ..|..|..  .+.|++
T Consensus       134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~~----------------------------------~~~~~~~~~~~~f~p~  179 (285)
T COG5084         134 GPPCRSFSLKGSCSSGPSCGYSHIDPDSFA----------------------------------GNCDQYSGATYGFCPL  179 (285)
T ss_pred             CCCcccccccceeccCCCCCccccCccccc----------------------------------ccccccCcccccccCC
Confidence            6679999 5899999999999998722211                                  24554432  688999


Q ss_pred             CCCCCCCCCCC
Q 019627          170 GDRCNFLHEDP  180 (338)
Q Consensus       170 G~~C~F~H~~~  180 (338)
                      |..|++.|...
T Consensus       180 g~~c~~~H~~~  190 (285)
T COG5084         180 GASCKFSHTLK  190 (285)
T ss_pred             CCccccccccc
Confidence            99999999964

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=95.96  E-value=0.0029  Score=62.68  Aligned_cols=36  Identities=36%  Similarity=0.757  Sum_probs=29.2

Q ss_pred             CCccccccCcccccccCCCCCCCccCCCcc----ccccCC
Q 019627          227 PVYWKTKLCIKWTQGQCPFGEKCHFAHGQS----ELQVIG  262 (338)
Q Consensus       227 ~~~~Kt~lC~~f~~G~C~~G~~C~FaHg~~----elr~~~  262 (338)
                      |....+.+|+||..|.|+||++|+|.||..    +||++.
T Consensus       135 PTh~sMkpC~ffLeg~CRF~enCRfSHG~~V~lsslr~yq  174 (486)
T KOG2185|consen  135 PTHESMKPCKFFLEGRCRFGENCRFSHGLDVPLSSLRNYQ  174 (486)
T ss_pred             CcchhhccchHhhccccccCcccccccCcccchhhcccCC
Confidence            345567789999999999999999999984    466553

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.93  E-value=0.0044  Score=35.35  Aligned_cols=19  Identities=42%  Similarity=0.915  Sum_probs=16.4

Q ss_pred             cccccccccCCCCCCCCcccC
Q 019627           95 LCAKFKHGACRNGENCNFAHG  115 (338)
Q Consensus        95 lC~~f~~G~C~~G~~C~FaH~  115 (338)
                      +|++|..  |++|++|.|+|.
T Consensus         1 ~Ck~~~~--C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN--CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC--CCCCCcCccCCc
Confidence            4887766  999999999994

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.73  E-value=0.0074  Score=60.92  Aligned_cols=109  Identities=17%  Similarity=0.234  Sum_probs=62.7

Q ss_pred             ccccccccc-cCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCCCC
Q 019627           94 RLCAKFKHG-ACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYGDR  172 (338)
Q Consensus        94 ~lC~~f~~G-~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~G~~  172 (338)
                      ..|.+|+.+ .|+.  .|.|.|..-.+.+                                ..+.|-++.+...|. .++
T Consensus        33 t~C~~w~~~~~C~k--~C~YRHSe~~~kr--------------------------------~e~~CYwe~~p~gC~-k~~   77 (667)
T KOG4791|consen   33 TVCTLWQEGRCCRK--VCRYRHSEIDKKR--------------------------------SEIPCYWENQPTGCQ-KLN   77 (667)
T ss_pred             chhhhhhhcCcccc--cccchhhHHhhhc--------------------------------CcccceeecCCCccC-CCc
Confidence            469999976 5555  9999998765432                                125786554444598 599


Q ss_pred             CCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcccccccCCCCCCCccC
Q 019627          173 CNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKWTQGQCPFGEKCHFA  252 (338)
Q Consensus       173 C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f~~G~C~~G~~C~Fa  252 (338)
                      |-|.|..+. +...-.....+..                  .+.+.+.-.+........-..|-+|.+|+|.-||.|-|+
T Consensus        78 CgfRH~~pP-Lkg~l~~~p~~pe------------------~ev~~~~~SAq~~sV~~~p~P~l~~~K~~e~~~D~~s~L  138 (667)
T KOG4791|consen   78 CGFRHNRPP-LKGVLPTVPESPE------------------EEVKASQLSAQQNSVQSNPSPQLRSVKKVESSEDVPSPL  138 (667)
T ss_pred             cccccCCCc-hhhhccCCCCCcc------------------cccccccccCCCcccccCCchHHHHhhhhhhhccccccC
Confidence            999997643 1111000001100                  011111101111111222345888899999999999999


Q ss_pred             CCcc
Q 019627          253 HGQS  256 (338)
Q Consensus       253 Hg~~  256 (338)
                      |...
T Consensus       139 h~P~  142 (667)
T KOG4791|consen  139 HPPV  142 (667)
T ss_pred             CCCc
Confidence            9873

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=95.72  E-value=0.004  Score=61.71  Aligned_cols=25  Identities=48%  Similarity=1.119  Sum_probs=22.9

Q ss_pred             cccccccccccCCCCCCCCcccCCC
Q 019627           93 TRLCAKFKHGACRNGENCNFAHGME  117 (338)
Q Consensus        93 T~lC~~f~~G~C~~G~~C~FaH~~~  117 (338)
                      -.+|.||+.|.|+++++|+|+|+..
T Consensus       140 MkpC~ffLeg~CRF~enCRfSHG~~  164 (486)
T KOG2185|consen  140 MKPCKFFLEGRCRFGENCRFSHGLD  164 (486)
T ss_pred             hccchHhhccccccCcccccccCcc
Confidence            3589999999999999999999876

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.55  E-value=0.0087  Score=34.13  Aligned_cols=19  Identities=32%  Similarity=0.738  Sum_probs=15.9

Q ss_pred             cCcccccccCCCCCCCccCCC
Q 019627          234 LCIKWTQGQCPFGEKCHFAHG  254 (338)
Q Consensus       234 lC~~f~~G~C~~G~~C~FaHg  254 (338)
                      +|++|..  |.+|++|.|+|.
T Consensus         1 ~Ck~~~~--C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN--CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC--CCCCCcCccCCc
Confidence            4887733  999999999995

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=95.02  E-value=0.0062  Score=56.47  Aligned_cols=30  Identities=30%  Similarity=0.618  Sum_probs=24.4

Q ss_pred             cccccccccccCCCCCCCCCCCCCCCCCCcc
Q 019627          152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAK  182 (338)
Q Consensus       152 ~~Kt~lCk~f~~~G~C~~G~~C~F~H~~~e~  182 (338)
                      ..|+.+|-.| ..+.|..|+.|.|+|+..+.
T Consensus        82 dpK~~vcalF-~~~~c~kg~~ckF~h~~ee~  111 (299)
T COG5252          82 DPKTVVCALF-LNKTCAKGDACKFAHGKEEA  111 (299)
T ss_pred             CchhHHHHHh-ccCccccCchhhhhcchHHH
Confidence            4578899866 56799999999999996543

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.77  E-value=0.011  Score=53.66  Aligned_cols=31  Identities=26%  Similarity=0.833  Sum_probs=25.8

Q ss_pred             cccccCccc-ccccCCCCCCCccCCCcccccc
Q 019627          230 WKTKLCIKW-TQGQCPFGEKCHFAHGQSELQV  260 (338)
Q Consensus       230 ~Kt~lC~~f-~~G~C~~G~~C~FaHg~~elr~  260 (338)
                      +...+|++| .+|+|-||+.|.|.|...++..
T Consensus       139 ~qpdVCKdyk~TGYCGYGDsCKflH~R~D~Kt  170 (259)
T COG5152         139 TQPDVCKDYKETGYCGYGDSCKFLHDRSDFKT  170 (259)
T ss_pred             cCcccccchhhcccccCCchhhhhhhhhhhhc
Confidence            344579999 9999999999999998875543

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=93.72  E-value=0.028  Score=51.02  Aligned_cols=32  Identities=31%  Similarity=0.789  Sum_probs=27.3

Q ss_pred             cccccccccccc-cccCCCCCCCCcccCCCCcC
Q 019627           89 IFFKTRLCAKFK-HGACRNGENCNFAHGMEDLR  120 (338)
Q Consensus        89 ~~~KT~lC~~f~-~G~C~~G~~C~FaH~~~e~r  120 (338)
                      +-|.-.+|+.|. +|.|-||+.|+|.|..++..
T Consensus       137 iD~qpdVCKdyk~TGYCGYGDsCKflH~R~D~K  169 (259)
T COG5152         137 IDTQPDVCKDYKETGYCGYGDSCKFLHDRSDFK  169 (259)
T ss_pred             eecCcccccchhhcccccCCchhhhhhhhhhhh
Confidence            446677999997 99999999999999887654

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.44  E-value=0.085  Score=50.58  Aligned_cols=29  Identities=28%  Similarity=0.949  Sum_probs=25.2

Q ss_pred             cccccCccc-ccccCCCCCCCccCCCcccc
Q 019627          230 WKTKLCIKW-TQGQCPFGEKCHFAHGQSEL  258 (338)
Q Consensus       230 ~Kt~lC~~f-~~G~C~~G~~C~FaHg~~el  258 (338)
                      +...+|+.| .+|+|-||+.|.|+|....+
T Consensus       184 ~qpDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  184 YQPDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             cCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence            445689999 99999999999999988755

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=90.07  E-value=0.075  Score=50.88  Aligned_cols=33  Identities=30%  Similarity=0.576  Sum_probs=28.9

Q ss_pred             ccccccCcccccccCCCCCCCccCCCccccccC
Q 019627          229 YWKTKLCIKWTQGQCPFGEKCHFAHGQSELQVI  261 (338)
Q Consensus       229 ~~Kt~lC~~f~~G~C~~G~~C~FaHg~~elr~~  261 (338)
                      -.|+.+|-+|..|.|..|+.|.|+|+....+..
T Consensus        89 DPKSvvCafFk~g~C~KG~kCKFsHdl~~~~k~  121 (343)
T KOG1763|consen   89 DPKSVVCAFFKQGTCTKGDKCKFSHDLAVERKK  121 (343)
T ss_pred             CchHHHHHHHhccCCCCCCcccccchHHHhhhc
Confidence            457889999999999999999999999876654

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.27  E-value=0.17  Score=49.93  Aligned_cols=24  Identities=25%  Similarity=0.917  Sum_probs=23.2

Q ss_pred             ccccccccccCCCCCCCCcccCCC
Q 019627           94 RLCAKFKHGACRNGENCNFAHGME  117 (338)
Q Consensus        94 ~lC~~f~~G~C~~G~~C~FaH~~~  117 (338)
                      .||++|+.|.|++|+.|+|.|...
T Consensus         9 tic~~~~~g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICKYYQKGNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhhhcccccccccceeeeeccCc
Confidence            799999999999999999999987

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=87.39  E-value=1.2  Score=46.94  Aligned_cols=22  Identities=27%  Similarity=0.584  Sum_probs=15.9

Q ss_pred             cccCcccccccCCCCCCCccCCCcc
Q 019627          232 TKLCIKWTQGQCPFGEKCHFAHGQS  256 (338)
Q Consensus       232 t~lC~~f~~G~C~~G~~C~FaHg~~  256 (338)
                      +.+|+|+  |.|.+ -.|+|.|...
T Consensus       625 ~~~CrY~--pnCrn-m~C~F~HPk~  646 (681)
T KOG3702|consen  625 RGLCRYR--PNCRN-MQCKFYHPKT  646 (681)
T ss_pred             cccceec--cCcCC-ccccccCCcc
Confidence            4568887  77777 7788888664

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.06  E-value=0.2  Score=48.11  Aligned_cols=32  Identities=31%  Similarity=0.830  Sum_probs=27.6

Q ss_pred             ccccccccccccc-cccCCCCCCCCcccCCCCc
Q 019627           88 NIFFKTRLCAKFK-HGACRNGENCNFAHGMEDL  119 (338)
Q Consensus        88 ~~~~KT~lC~~f~-~G~C~~G~~C~FaH~~~e~  119 (338)
                      -+=|--.+|+.|. +|.|.||+.|+|.|...+.
T Consensus       181 ~~d~qpDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  181 RIDYQPDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             eeecCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence            3446778999998 9999999999999988765

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.70  E-value=0.25  Score=48.78  Aligned_cols=24  Identities=29%  Similarity=0.952  Sum_probs=23.0

Q ss_pred             ccCcccccccCCCCCCCccCCCcc
Q 019627          233 KLCIKWTQGQCPFGEKCHFAHGQS  256 (338)
Q Consensus       233 ~lC~~f~~G~C~~G~~C~FaHg~~  256 (338)
                      .+|+||..|+|.+|+.|+|.|...
T Consensus         9 tic~~~~~g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICKYYQKGNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhhhcccccccccceeeeeccCc
Confidence            789999999999999999999987

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=82.81  E-value=0.72  Score=27.64  Aligned_cols=21  Identities=33%  Similarity=0.776  Sum_probs=17.4

Q ss_pred             ccccccccc-cCCCCCCCCcccC
Q 019627           94 RLCAKFKHG-ACRNGENCNFAHG  115 (338)
Q Consensus        94 ~lC~~f~~G-~C~~G~~C~FaH~  115 (338)
                      .+|.+..+| .|.. +.|.|.|.
T Consensus         1 ~lC~yEl~Gg~Cnd-~~C~~QHf   22 (23)
T PF10650_consen    1 PLCPYELTGGVCND-PDCEFQHF   22 (23)
T ss_pred             CCCccccCCCeeCC-CCCCcccc
Confidence            379999987 9966 79999994

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=81.89  E-value=0.84  Score=27.36  Aligned_cols=20  Identities=35%  Similarity=0.599  Sum_probs=16.7

Q ss_pred             cCcccccc-cCCCCCCCccCCC
Q 019627          234 LCIKWTQG-QCPFGEKCHFAHG  254 (338)
Q Consensus       234 lC~~f~~G-~C~~G~~C~FaHg  254 (338)
                      +|.|..+| .|.. +.|.|.|-
T Consensus         2 lC~yEl~Gg~Cnd-~~C~~QHf   22 (23)
T PF10650_consen    2 LCPYELTGGVCND-PDCEFQHF   22 (23)
T ss_pred             CCccccCCCeeCC-CCCCcccc
Confidence            69988666 9988 89999993

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	338
1rgo_A	70	Structural Basis For Recognition Of The Mrna Class		3e-06
1m9o_A	77	Nmr Structure Of The First Zinc Binding Domain Of N		4e-06

>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au- Rich Element By The Tandem Zinc Finger Domain Of Tis11d Length = 70

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 26/88 (29%)
Query: 91  FKTRLCAKFKH-GACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQ 149
           +KT LC  F+  G C+ GE C FAHG  +LR    + +                      
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPK---------------------- 41
Query: 150 KIIHKMKLCKKFYNGEECPYGDRCNFLH 177
              +K +LC+ F+    CPYG RC+F+H
Sbjct: 42  ---YKTELCRTFHTIGFCPYGPRCHFIH 66

>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of Nup475TTPTIS11 Length = 77

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 26/93 (27%)
Query: 86  ITNIFFKTRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGN 144
            T+  +KT LC  + + G CR G  C FAHG+ +LRQ                       
Sbjct: 5   TTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA---------------------- 42
Query: 145 WDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLH 177
              ++   +K +LC KF     CPYG RC+F+H
Sbjct: 43  ---NRHPKYKTELCHKFKLQGRCPYGSRCHFIH 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	338
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-17
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	3e-13
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-09
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-04
2rhk_C	72	Cleavage and polyadenylation specificity factor su	7e-08
2rhk_C	72	Cleavage and polyadenylation specificity factor su	9e-04
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	5e-07
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	1e-06
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	4e-06
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	7e-05

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 75.0 bits (184), Expect = 2e-17
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 26/97 (26%)

Query: 84  KGITNIFFKTRLCAKF-KHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSG 142
              T+  +KT LC  + + G CR G  C FAHG+ +LRQ   + +               
Sbjct: 3   HMTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPK--------------- 47

Query: 143 GNWDDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHED 179
                     +K +LC KF     CPYG RC+F+H  
Sbjct: 48  ----------YKTELCHKFKLQGRCPYGSRCHFIHNP 74

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 63.0 bits (153), Expect = 3e-13
 Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 40/106 (37%)

Query: 153 HKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSN 212
           +K +LC+ +     C YG +C F H                                   
Sbjct: 10  YKTELCRTYSESGRCRYGAKCQFAH----------------------------------- 34

Query: 213 QAEGNRPVGSNCVKPVYWKTKLCIKW-TQGQCPFGEKCHFAHGQSE 257
                        +   +KT+LC K+  QG+CP+G +CHF H  +E
Sbjct: 35  ----GLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 221 GSNCVKPVYWKTKLCIKWTQ-GQCPFGEKCHFAHGQSELQ 259
           GS+      +KT+LC  +++ G+C +G KC FAHG  EL+
Sbjct: 1   GSHMTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELR 40

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 90  FFKTRLCAKF-KHGACRNGENCNFAHGMED 118
            +KT LC KF   G C  G  C+F H   +
Sbjct: 47  KYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 47.9 bits (114), Expect = 7e-08
 Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 35/91 (38%)

Query: 92  KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKI 151
           KT +C  +  G C+ G+ C F H  +                                  
Sbjct: 15  KTVVCKHWLRGLCKKGDQCEFLHEYD---------------------------------- 40

Query: 152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAK 182
           + KM  C  +    EC     C FLH DP  
Sbjct: 41  MTKMSECYFYSKFGECS-NKECPFLHIDPES 70

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 36.4 bits (84), Expect = 9e-04
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 146 DDDQKIIHKMKLCKKFYNGEECPYGDRCNFLHE 178
                   K  +CK +  G  C  GD+C FLHE
Sbjct: 7   HHSHMSGEKTVVCKHWLRGL-CKKGDQCEFLHE 38

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 46.0 bits (109), Expect = 5e-07
 Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 35/91 (38%)

Query: 92  KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKI 151
           KT +C  +  G C+ G+ C F H                                  +  
Sbjct: 9   KTVVCKHWLRGLCKKGDQCEFLH----------------------------------EYD 34

Query: 152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAK 182
           + KM  C  +    EC     C FLH DP  
Sbjct: 35  MTKMPECYFYSKFGEC-SNKECPFLHIDPES 64

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 18/91 (19%), Positives = 24/91 (26%), Gaps = 39/91 (42%)

Query: 92  KTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKI 151
           K  LC  +  G C   ENC + HG                                    
Sbjct: 12  KRELCKFYITGFCARAENCPYMHGD----------------------------------- 36

Query: 152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAK 182
                 CK ++    C  GD C F H+   +
Sbjct: 37  ----FPCKLYHTTGNCINGDDCMFSHDPLTE 63

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 43.0 bits (101), Expect = 4e-06
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 233 KLCIKWTQGQCPFGEKCHFAHGQSELQ 259
            +C ++  G CP G  C FAHG +EL 
Sbjct: 21  SICDRYMNGTCPEGNSCKFAHGNAELH 47

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 39.5 bits (92), Expect = 7e-05
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 4/35 (11%)

Query: 94  RLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQE 128
            +C ++ +G C  G +C FAHG  +L +    W+E
Sbjct: 21  SICDRYMNGTCPEGNSCKFAHGNAELHE----WEE 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	338
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.59
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.46
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.42
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.18
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.16
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.97
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	98.94
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	98.93
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.9
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.81
2rhk_C	72	Cleavage and polyadenylation specificity factor su	98.8
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.71
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.7
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.58
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.54
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.49
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.43
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.29
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	97.98
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	96.14
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	95.85
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	94.33
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	93.19
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	92.91
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	91.88

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.59  E-value=3e-16  Score=120.17  Aligned_cols=69  Identities=42%  Similarity=0.912  Sum_probs=31.2

Q ss_pred             ccccccccccccc-cccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCC
Q 019627           88 NIFFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEE  166 (338)
Q Consensus        88 ~~~~KT~lC~~f~-~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~  166 (338)
                      +..|||++|++|+ +|.|++|++|+|+|+..+++....                         +..+++.+|++|...|.
T Consensus         7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~-------------------------~~~~k~~~C~~f~~~G~   61 (77)
T 1m9o_A            7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR-------------------------HPKYKTELCHKFKLQGR   61 (77)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-------------------------------------------
T ss_pred             CCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccc-------------------------cccccCCcccchhhCcC
Confidence            3568999999996 899999999999999998875321                         12578899998988999


Q ss_pred             CCCCCCCCCCCCCCc
Q 019627          167 CPYGDRCNFLHEDPA  181 (338)
Q Consensus       167 C~~G~~C~F~H~~~e  181 (338)
                      |++|++|+|+|...+
T Consensus        62 C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A           62 CPYGSRCHFIHNPTE   76 (77)
T ss_dssp             ---------------
T ss_pred             CCCcCcCCCCCCCCC
Confidence            999999999998654

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.46  E-value=1.8e-14  Score=110.18  Aligned_cols=68  Identities=35%  Similarity=0.811  Sum_probs=28.3

Q ss_pred             hcccccccccccCCCCCCCCCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 019627          151 IIHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYW  230 (338)
Q Consensus       151 ~~~Kt~lCk~f~~~G~C~~G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~  230 (338)
                      ..+|+++|++|...|.|.+|++|+|+|+..+....                                       .....+
T Consensus         8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~---------------------------------------~~~~~~   48 (77)
T 1m9o_A            8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA---------------------------------------NRHPKY   48 (77)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT---------------------------------------C-----
T ss_pred             CCccchhCHHhhhCCCcCCCCCccCCCCChhhccc---------------------------------------cccccc
Confidence            36899999988888999999999999997542110                                       001257


Q ss_pred             ccccCccc-ccccCCCCCCCccCCCccc
Q 019627          231 KTKLCIKW-TQGQCPFGEKCHFAHGQSE  257 (338)
Q Consensus       231 Kt~lC~~f-~~G~C~~G~~C~FaHg~~e  257 (338)
                      ++.+|++| .+|.|++|++|+|+|+..|
T Consensus        49 k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A           49 KTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             ----------------------------
T ss_pred             cCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            88999988 8999999999999999875

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1e-13  Score=106.58  Aligned_cols=56  Identities=34%  Similarity=0.737  Sum_probs=48.2

Q ss_pred             ccccccccccccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCC
Q 019627           90 FFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPY  169 (338)
Q Consensus        90 ~~KT~lC~~f~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~  169 (338)
                      .+|+++|++|+.|.|++|++|.|+|++...+                                  +.+|++|...|.|. 
T Consensus         7 ~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~~----------------------------------~~~C~~f~~~G~C~-   51 (77)
T 2d9n_A            7 GEKTVVCKHWLRGLCKKGDQCEFLHEYDMTK----------------------------------MPECYFYSKFGECS-   51 (77)
T ss_dssp             CCTTSBCHHHHTTCCSCTTSSSSBCSCCTTT----------------------------------SCBCHHHHHTCCCC-
T ss_pred             CCcceeCHhHccCcCCCCCCCCCccccccCc----------------------------------CCCCcccCCCCccC-
Confidence            3589999999999999999999999877432                                  34899887769999 


Q ss_pred             CCCCCCCCCCC
Q 019627          170 GDRCNFLHEDP  180 (338)
Q Consensus       170 G~~C~F~H~~~  180 (338)
                      |++|+|+|..+
T Consensus        52 ~~~C~f~H~~~   62 (77)
T 2d9n_A           52 NKECPFLHIDP   62 (77)
T ss_dssp             CSSCSSBCCCT
T ss_pred             CCCeeccCCCc
Confidence            89999999964

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.18  E-value=5.5e-12  Score=95.67  Aligned_cols=60  Identities=33%  Similarity=0.661  Sum_probs=49.7

Q ss_pred             cccccccccccccccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCC
Q 019627           87 TNIFFKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEE  166 (338)
Q Consensus        87 ~~~~~KT~lC~~f~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~  166 (338)
                      .....|+++|++|+.|.|++|++|.|+|+....                                  ++.+|++|...|.
T Consensus        10 ~~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~----------------------------------~~~~C~~f~~~G~   55 (72)
T 2rhk_C           10 HMSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMT----------------------------------KMSECYFYSKFGE   55 (72)
T ss_dssp             SSSCCCCSBCHHHHTTCCCCGGGSSSBCSCCTT----------------------------------SCCBCHHHHHHSC
T ss_pred             cCCCCcCeeCHHHhcCCCCCCCCCCCccccccc----------------------------------cCCcccccCCCCC
Confidence            334568999999999999999999999987543                                  2358997766599


Q ss_pred             CCCCCCCCCCCCCCc
Q 019627          167 CPYGDRCNFLHEDPA  181 (338)
Q Consensus       167 C~~G~~C~F~H~~~e  181 (338)
                      |.+ ++|+|+|..+.
T Consensus        56 C~~-~~C~y~H~~p~   69 (72)
T 2rhk_C           56 CSN-KECPFLHIDPE   69 (72)
T ss_dssp             CSB-TTCCSBCCCCC
T ss_pred             CCC-CCeeccCCCcc
Confidence            999 99999999764

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.16  E-value=1.3e-11  Score=99.01  Aligned_cols=51  Identities=35%  Similarity=0.747  Sum_probs=45.9

Q ss_pred             cccccccccccccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCC
Q 019627           91 FKTRLCAKFKHGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYG  170 (338)
Q Consensus        91 ~KT~lC~~f~~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~G  170 (338)
                      +|+++|++|++|.|++|++|+|+|+     .                                  .+|++|...|.|++|
T Consensus        11 ~k~~lC~~f~~G~C~~G~~C~f~H~-----~----------------------------------~~C~~f~~~G~C~~G   51 (98)
T 2cqe_A           11 KKRELCKFYITGFCARAENCPYMHG-----D----------------------------------FPCKLYHTTGNCING   51 (98)
T ss_dssp             CCCSBCTTTTTTCCSCSTTCSSBSS-----S----------------------------------SBCSHHHHTSCCSSC
T ss_pred             CCCccCcccccCcCCCCCCCCCCCC-----C----------------------------------CcCcCcccCCcCCCC
Confidence            5899999999999999999999998     1                                  279988778999999


Q ss_pred             CCCCCCCCCC
Q 019627          171 DRCNFLHEDP  180 (338)
Q Consensus       171 ~~C~F~H~~~  180 (338)
                      ++|+|+|...
T Consensus        52 ~~C~f~H~~~   61 (98)
T 2cqe_A           52 DDCMFSHDPL   61 (98)
T ss_dssp             TTCSSBCCCC
T ss_pred             CCCcccCCCC
Confidence            9999999854

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.97  E-value=2.3e-10  Score=86.18  Aligned_cols=60  Identities=22%  Similarity=0.692  Sum_probs=48.0

Q ss_pred             ccccccccccccCCCCC-CCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCC
Q 019627           92 KTRLCAKFKHGACRNGE-NCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYG  170 (338)
Q Consensus        92 KT~lC~~f~~G~C~~G~-~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~G  170 (338)
                      |.++|++|++|.|.+|+ .|+|+|...+....+                           ...++.+|++|. .|.|.+|
T Consensus         5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~---------------------------~~~~~~vC~~fl-kG~C~r~   56 (70)
T 3d2q_A            5 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDT---------------------------NDNTVTVCMDYI-KGRCSRE   56 (70)
T ss_dssp             EEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBT---------------------------TTTEEEBCHHHH-TTCCCCT
T ss_pred             cchhCHHHhcCCCCCCCCCCCCccCcccccccc---------------------------cCCcceeccccC-cCCCCCC
Confidence            77899999999999999 599999987653210                           134678999775 5899999


Q ss_pred             CCCCCCCCCC
Q 019627          171 DRCNFLHEDP  180 (338)
Q Consensus       171 ~~C~F~H~~~  180 (338)
                       .|+|+|..+
T Consensus        57 -~C~y~H~~~   65 (70)
T 3d2q_A           57 -KCKYFHPPA   65 (70)
T ss_dssp             -TCCSBCCCH
T ss_pred             -CcCeeCCHH
Confidence             999999853

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=98.94  E-value=5.8e-10  Score=89.36  Aligned_cols=52  Identities=31%  Similarity=0.691  Sum_probs=44.8

Q ss_pred             cccccccccccCCCCCCCCCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 019627          152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK  231 (338)
Q Consensus       152 ~~Kt~lCk~f~~~G~C~~G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~K  231 (338)
                      .+|+.+|++| ..|.|.+|++|+|+|+.                                                    
T Consensus        10 ~~k~~lC~~f-~~G~C~~G~~C~f~H~~----------------------------------------------------   36 (98)
T 2cqe_A           10 PKKRELCKFY-ITGFCARAENCPYMHGD----------------------------------------------------   36 (98)
T ss_dssp             SCCCSBCTTT-TTTCCSCSTTCSSBSSS----------------------------------------------------
T ss_pred             CCCCccCccc-ccCcCCCCCCCCCCCCC----------------------------------------------------
Confidence            4678899977 68999999999999981                                                    


Q ss_pred             cccCccc-ccccCCCCCCCccCCCccc
Q 019627          232 TKLCIKW-TQGQCPFGEKCHFAHGQSE  257 (338)
Q Consensus       232 t~lC~~f-~~G~C~~G~~C~FaHg~~e  257 (338)
                       .+|++| .+|.|++|++|+|+|....
T Consensus        37 -~~C~~f~~~G~C~~G~~C~f~H~~~~   62 (98)
T 2cqe_A           37 -FPCKLYHTTGNCINGDDCMFSHDPLT   62 (98)
T ss_dssp             -SBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred             -CcCcCcccCCcCCCCCCCcccCCCCc
Confidence             149999 7999999999999999653

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=4.1e-10  Score=86.26  Aligned_cols=58  Identities=33%  Similarity=0.689  Sum_probs=46.6

Q ss_pred             cccccccccccCCCCCCCCCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 019627          152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK  231 (338)
Q Consensus       152 ~~Kt~lCk~f~~~G~C~~G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~K  231 (338)
                      .+|+.+|++|.. |.|.+|+.|.|+|+...                                                .+
T Consensus         7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~------------------------------------------------~~   37 (77)
T 2d9n_A            7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDM------------------------------------------------TK   37 (77)
T ss_dssp             CCTTSBCHHHHT-TCCSCTTSSSSBCSCCT------------------------------------------------TT
T ss_pred             CCcceeCHhHcc-CcCCCCCCCCCcccccc------------------------------------------------Cc
Confidence            457889997765 99999999999998531                                                13


Q ss_pred             cccCccccc-ccCCCCCCCccCCCccccc
Q 019627          232 TKLCIKWTQ-GQCPFGEKCHFAHGQSELQ  259 (338)
Q Consensus       232 t~lC~~f~~-G~C~~G~~C~FaHg~~elr  259 (338)
                      +.+|++|++ |.|. |++|+|+|...+..
T Consensus        38 ~~~C~~f~~~G~C~-~~~C~f~H~~~~~~   65 (77)
T 2d9n_A           38 MPECYFYSKFGECS-NKECPFLHIDPESK   65 (77)
T ss_dssp             SCBCHHHHHTCCCC-CSSCSSBCCCTTSS
T ss_pred             CCCCcccCCCCccC-CCCeeccCCCcccc
Confidence            457999966 9999 89999999986543

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.90  E-value=4.2e-10  Score=84.70  Aligned_cols=64  Identities=22%  Similarity=0.702  Sum_probs=50.2

Q ss_pred             cccccccccCCCCCCCCC-CCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 019627          154 KMKLCKKFYNGEECPYGD-RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKT  232 (338)
Q Consensus       154 Kt~lCk~f~~~G~C~~G~-~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt  232 (338)
                      |..+|++| ..|.|.+|+ .|+|+|...+..                                         ......++
T Consensus         5 k~~vC~~f-~~G~C~rg~~~C~f~H~~~~~~-----------------------------------------~~~~~~~~   42 (70)
T 3d2q_A            5 RLEVCREY-QRGNCNRGENDCRFAHPADSTM-----------------------------------------IDTNDNTV   42 (70)
T ss_dssp             EEEBCHHH-HTTCCSSCTTTCSSBCCCTTSC-----------------------------------------CBTTTTEE
T ss_pred             cchhCHHH-hcCCCCCCCCCCCCccCccccc-----------------------------------------ccccCCcc
Confidence            56799988 679999999 599999864310                                         01123467


Q ss_pred             ccCcccccccCCCCCCCccCCCcccccc
Q 019627          233 KLCIKWTQGQCPFGEKCHFAHGQSELQV  260 (338)
Q Consensus       233 ~lC~~f~~G~C~~G~~C~FaHg~~elr~  260 (338)
                      .+|.+|++|.|.+| +|+|+|...+|+.
T Consensus        43 ~vC~~flkG~C~r~-~C~y~H~~~~L~~   69 (70)
T 3d2q_A           43 TVCMDYIKGRCSRE-KCKYFHPPAHLQA   69 (70)
T ss_dssp             EBCHHHHTTCCCCT-TCCSBCCCHHHHC
T ss_pred             eeccccCcCCCCCC-CcCeeCCHHHHhc
Confidence            88999989999999 9999999988764

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=5.7e-10  Score=89.40  Aligned_cols=61  Identities=25%  Similarity=0.663  Sum_probs=49.0

Q ss_pred             ccccccccccccCCCCC-CCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCCCCCC
Q 019627           92 KTRLCAKFKHGACRNGE-NCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEECPYG  170 (338)
Q Consensus        92 KT~lC~~f~~G~C~~G~-~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~C~~G  170 (338)
                      |.++|++|+.|.|.+|+ .|+|+|...+....+                           ...++.+|.+| ..|.|.++
T Consensus        19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~---------------------------~~~~~~vC~~f-lkG~C~r~   70 (98)
T 2e5s_A           19 KLEVCREFQRGNCARGETDCRFAHPADSTMIDT---------------------------SDNTVTVCMDY-IKGRCMRE   70 (98)
T ss_dssp             EEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCT---------------------------TTCEEEBCHHH-HHTCCCCT
T ss_pred             hhhhhHHHhcCcCCCCCCCCCCcCCchhccccc---------------------------cCCccccchhh-ccCCCCCC
Confidence            78999999999999999 899999987653211                           02456799866 55899998


Q ss_pred             CCCCCCCCCCc
Q 019627          171 DRCNFLHEDPA  181 (338)
Q Consensus       171 ~~C~F~H~~~e  181 (338)
                       .|+|.|....
T Consensus        71 -~C~y~H~~~~   80 (98)
T 2e5s_A           71 -KCKYFHPPAH   80 (98)
T ss_dssp             -TCCSBCCCHH
T ss_pred             -CcCccCChHH
Confidence             9999998653

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=98.80  E-value=1.2e-09  Score=82.70  Aligned_cols=57  Identities=33%  Similarity=0.676  Sum_probs=45.4

Q ss_pred             cccccccccccCCCCCCCCCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 019627          152 IHKMKLCKKFYNGEECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK  231 (338)
Q Consensus       152 ~~Kt~lCk~f~~~G~C~~G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~K  231 (338)
                      ..++.+|++|.. |.|.+|+.|.|+|+...                                                .+
T Consensus        13 ~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~------------------------------------------------~~   43 (72)
T 2rhk_C           13 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDM------------------------------------------------TK   43 (72)
T ss_dssp             CCCCSBCHHHHT-TCCCCGGGSSSBCSCCT------------------------------------------------TS
T ss_pred             CCcCeeCHHHhc-CCCCCCCCCCCcccccc------------------------------------------------cc
Confidence            346789997755 99999999999998421                                                13


Q ss_pred             cccCccccc-ccCCCCCCCccCCCcccc
Q 019627          232 TKLCIKWTQ-GQCPFGEKCHFAHGQSEL  258 (338)
Q Consensus       232 t~lC~~f~~-G~C~~G~~C~FaHg~~el  258 (338)
                      +.+|++|++ |.|.+ ++|+|.|...+.
T Consensus        44 ~~~C~~f~~~G~C~~-~~C~y~H~~p~~   70 (72)
T 2rhk_C           44 MSECYFYSKFGECSN-KECPFLHIDPES   70 (72)
T ss_dssp             CCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred             CCcccccCCCCCCCC-CCeeccCCCccc
Confidence            457999976 99999 999999987654

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.71  E-value=2.4e-09  Score=85.81  Aligned_cols=67  Identities=24%  Similarity=0.636  Sum_probs=51.6

Q ss_pred             cccccccccccCCCCCCCCC-CCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 019627          152 IHKMKLCKKFYNGEECPYGD-RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYW  230 (338)
Q Consensus       152 ~~Kt~lCk~f~~~G~C~~G~-~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~  230 (338)
                      ..|..+|++|.. |.|.+|+ .|+|+|.......                                         .....
T Consensus        17 ~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~-----------------------------------------~~~~~   54 (98)
T 2e5s_A           17 TDKLEVCREFQR-GNCARGETDCRFAHPADSTMI-----------------------------------------DTSDN   54 (98)
T ss_dssp             SSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC-----------------------------------------CTTTC
T ss_pred             hhhhhhhHHHhc-CcCCCCCCCCCCcCCchhccc-----------------------------------------cccCC
Confidence            346789998865 8999999 7999999643110                                         01134


Q ss_pred             ccccCcccccccCCCCCCCccCCCccccccC
Q 019627          231 KTKLCIKWTQGQCPFGEKCHFAHGQSELQVI  261 (338)
Q Consensus       231 Kt~lC~~f~~G~C~~G~~C~FaHg~~elr~~  261 (338)
                      ++.+|.+|++|.|.+| +|+|.|...+|...
T Consensus        55 ~~~vC~~flkG~C~r~-~C~y~H~~~~l~~~   84 (98)
T 2e5s_A           55 TVTVCMDYIKGRCMRE-KCKYFHPPAHLQAK   84 (98)
T ss_dssp             EEEBCHHHHHTCCCCT-TCCSBCCCHHHHHH
T ss_pred             ccccchhhccCCCCCC-CcCccCChHHHHHH
Confidence            6778999999999998 99999999877653

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.70  E-value=6.7e-09  Score=80.70  Aligned_cols=62  Identities=23%  Similarity=0.596  Sum_probs=49.2

Q ss_pred             ccccccccccccccccCCCCC-CCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCC
Q 019627           88 NIFFKTRLCAKFKHGACRNGE-NCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEE  166 (338)
Q Consensus        88 ~~~~KT~lC~~f~~G~C~~G~-~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~  166 (338)
                      ..|.|.++|++|+.|.|.+|+ .|+|+|....+..                             ...++..|..| ..|.
T Consensus         4 ~~~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~-----------------------------~~~~~~vC~df-lkG~   53 (83)
T 3d2n_A            4 TKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQV-----------------------------ENGRVIACFDS-LKGR   53 (83)
T ss_dssp             CGGGEEEBCTTGGGTCCCSCTTTCSSBCCCTTCCE-----------------------------ETTEEECCHHH-HTTC
T ss_pred             cccccchhcHHHhcCCCCCCCCCCCCcCCCccccc-----------------------------cCCceeehhHh-hhcc
Confidence            457789999999999999997 9999998764311                             01245689877 5689


Q ss_pred             CCCCCCCCCCCCCC
Q 019627          167 CPYGDRCNFLHEDP  180 (338)
Q Consensus       167 C~~G~~C~F~H~~~  180 (338)
                      |.++ .|+|.|...
T Consensus        54 C~r~-~C~y~H~~~   66 (83)
T 3d2n_A           54 CSRE-NCKYLHPPP   66 (83)
T ss_dssp             CCCS-SCSSCCCCH
T ss_pred             ccCC-CcceeCChH
Confidence            9998 999999854

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=8.4e-09  Score=76.87  Aligned_cols=35  Identities=34%  Similarity=0.725  Sum_probs=30.9

Q ss_pred             ccccccCcccccccCCCCCCCccCCCccccccCCC
Q 019627          229 YWKTKLCIKWTQGQCPFGEKCHFAHGQSELQVIGG  263 (338)
Q Consensus       229 ~~Kt~lC~~f~~G~C~~G~~C~FaHg~~elr~~~~  263 (338)
                      ..+.+||++|.+|.|++|++|+||||..||+....
T Consensus        17 ~~k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~~~~   51 (69)
T 2d9m_A           17 TGYFSICDRYMNGTCPEGNSCKFAHGNAELHEWEE   51 (69)
T ss_dssp             CSCCSBCHHHHHSCCSSCSSCSSBSSHHHHHHHHH
T ss_pred             CCCcccCcccCcCCCCCCCccCCcCCHHHHhhHHH
Confidence            44679999999999999999999999999998533

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.54  E-value=3e-08  Score=76.97  Aligned_cols=63  Identities=21%  Similarity=0.553  Sum_probs=48.3

Q ss_pred             ccccccccccCCCCCCCCC-CCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 019627          153 HKMKLCKKFYNGEECPYGD-RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWK  231 (338)
Q Consensus       153 ~Kt~lCk~f~~~G~C~~G~-~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~K  231 (338)
                      .+..+|+.|.. |.|.+|+ .|+|+|..... .                                          ....+
T Consensus         7 ~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~-~------------------------------------------~~~~~   42 (83)
T 3d2n_A            7 LTLEVCREFQR-GTCSRPDTECKFAHPSKSC-Q------------------------------------------VENGR   42 (83)
T ss_dssp             GEEEBCTTGGG-TCCCSCTTTCSSBCCCTTC-C------------------------------------------EETTE
T ss_pred             ccchhcHHHhc-CCCCCCCCCCCCcCCCccc-c------------------------------------------ccCCc
Confidence            45679998866 9999997 99999985320 0                                          00124


Q ss_pred             cccCcccccccCCCCCCCccCCCcccccc
Q 019627          232 TKLCIKWTQGQCPFGEKCHFAHGQSELQV  260 (338)
Q Consensus       232 t~lC~~f~~G~C~~G~~C~FaHg~~elr~  260 (338)
                      ..+|.+|++|.|.++ .|+|.|....+..
T Consensus        43 ~~vC~dflkG~C~r~-~C~y~H~~~~l~~   70 (83)
T 3d2n_A           43 VIACFDSLKGRCSRE-NCKYLHPPPHLKT   70 (83)
T ss_dssp             EECCHHHHTTCCCCS-SCSSCCCCHHHHH
T ss_pred             eeehhHhhhccccCC-CcceeCChHHHHH
Confidence            567999999999998 9999999877654

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.49  E-value=4.9e-08  Score=76.75  Aligned_cols=62  Identities=21%  Similarity=0.575  Sum_probs=48.5

Q ss_pred             ccccccccccccccccCCCCC-CCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCC
Q 019627           88 NIFFKTRLCAKFKHGACRNGE-NCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEE  166 (338)
Q Consensus        88 ~~~~KT~lC~~f~~G~C~~G~-~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~  166 (338)
                      ..+.+.++|+.|++|.|.+|+ .|+|+|........                             ..++..|..| ..|.
T Consensus        12 ~~~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~-----------------------------~~~~~vC~df-lkG~   61 (89)
T 2rpp_A           12 TKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVE-----------------------------NGRVIACFDS-LKGR   61 (89)
T ss_dssp             CSSSEECBCHHHHHTCCCCCTTTSSSBCCCSSSCCB-----------------------------TTBEEBCHHH-HHTC
T ss_pred             CCcchhhhchHHhcCCCCCCCCCCCCcCCCcccccc-----------------------------CCceeeehhh-hhCc
Confidence            345588999999999999998 99999987753110                             1245689877 5689


Q ss_pred             CCCCCCCCCCCCCC
Q 019627          167 CPYGDRCNFLHEDP  180 (338)
Q Consensus       167 C~~G~~C~F~H~~~  180 (338)
                      |.++ .|+|.|...
T Consensus        62 C~r~-~Cky~H~~~   74 (89)
T 2rpp_A           62 CSRE-NCKYLHPPT   74 (89)
T ss_dssp             CCCT-TCCSBCCCH
T ss_pred             CCCC-CcceecCHH
Confidence            9987 999999854

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=1.7e-08  Score=75.21  Aligned_cols=30  Identities=33%  Similarity=0.947  Sum_probs=28.2

Q ss_pred             ccccccccccccCCCCCCCCcccCCCCcCC
Q 019627           92 KTRLCAKFKHGACRNGENCNFAHGMEDLRQ  121 (338)
Q Consensus        92 KT~lC~~f~~G~C~~G~~C~FaH~~~e~r~  121 (338)
                      |++||.+|.+|.|+||++|+|||+.+||+.
T Consensus        19 k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~   48 (69)
T 2d9m_A           19 YFSICDRYMNGTCPEGNSCKFAHGNAELHE   48 (69)
T ss_dssp             CCSBCHHHHHSCCSSCSSCSSBSSHHHHHH
T ss_pred             CcccCcccCcCCCCCCCccCCcCCHHHHhh
Confidence            669999999999999999999999999975

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.29  E-value=2e-07  Score=73.22  Aligned_cols=62  Identities=21%  Similarity=0.573  Sum_probs=47.5

Q ss_pred             cccccccccCCCCCCCCC-CCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 019627          154 KMKLCKKFYNGEECPYGD-RCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKT  232 (338)
Q Consensus       154 Kt~lCk~f~~~G~C~~G~-~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt  232 (338)
                      +..+|+.|.. |.|.+|+ .|+|+|......                              +             ..-+.
T Consensus        16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~------------------------------v-------------~~~~~   51 (89)
T 2rpp_A           16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSCQ------------------------------V-------------ENGRV   51 (89)
T ss_dssp             EECBCHHHHH-TCCCCCTTTSSSBCCCSSSC------------------------------C-------------BTTBE
T ss_pred             hhhhchHHhc-CCCCCCCCCCCCcCCCcccc------------------------------c-------------cCCce
Confidence            4568998865 8999998 999999854210                              0             01235


Q ss_pred             ccCcccccccCCCCCCCccCCCcccccc
Q 019627          233 KLCIKWTQGQCPFGEKCHFAHGQSELQV  260 (338)
Q Consensus       233 ~lC~~f~~G~C~~G~~C~FaHg~~elr~  260 (338)
                      ..|.+|++|.|.++ .|+|.|....|..
T Consensus        52 ~vC~dflkG~C~r~-~Cky~H~~~hl~~   78 (89)
T 2rpp_A           52 IACFDSLKGRCSRE-NCKYLHPPTHLKT   78 (89)
T ss_dssp             EBCHHHHHTCCCCT-TCCSBCCCHHHHH
T ss_pred             eeehhhhhCcCCCC-CcceecCHHHHHH
Confidence            67999999999997 9999999876654

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=97.98  E-value=3.5e-06  Score=76.26  Aligned_cols=95  Identities=25%  Similarity=0.583  Sum_probs=61.4

Q ss_pred             ccccccccccCC----CCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchh-------hccccccccccc
Q 019627           94 RLCAKFKHGACR----NGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQK-------IIHKMKLCKKFY  162 (338)
Q Consensus        94 ~lC~~f~~G~C~----~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~-------~~~Kt~lCk~f~  162 (338)
                      =+|++|+.|.|+    .+..|+|+|++....    |..-|    +..+.   .+-..++-.       +..=.++|.+| 
T Consensus        90 HLCK~~l~G~C~~~~~~~~~Ck~SHdi~s~~----N~~vL----k~h~l---~~L~~~eL~~LLLQnDp~lLPeiC~~Y-  157 (229)
T 3u9g_A           90 HLCKLNLLGRCHYAQSQRNLCKYSHDVLSEQ----NFQIL----KNHEL---SGLNQEELACLLVQSDPFFLPEICKSY-  157 (229)
T ss_dssp             CCCHHHHTTCCGGGTCCSSCCSSCSCTTCHH----HHHHH----HHTTC---TTCCHHHHHHHHHTTCGGGSCCBCTTC-
T ss_pred             eechhhhcCcCCcccCCCCCcccccccCchh----HHHHH----HHcCc---ccCCHhHhhheeccCCCccCchHHHHh-
Confidence            379999999993    468899999886431    11000    00000   000000000       01123689988 


Q ss_pred             CC----CCCCCCCCCCCCCCCCccccCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCccc
Q 019627          163 NG----EECPYGDRCNFLHEDPAKFRDDSGRYRESSAISIGTTGPPVVTGSCSNQAEGNRPVGSNCVKPVYWKTKLCIKW  238 (338)
Q Consensus       163 ~~----G~C~~G~~C~F~H~~~e~~r~~s~~~res~~~svg~~~~p~~~g~~~n~~e~~~p~n~~~~~~~~~Kt~lC~~f  238 (338)
                      ++    |.|.+++.|..+|.                                                        |.+|
T Consensus       158 kG~g~~g~C~~~~~C~kLHI--------------------------------------------------------C~~F  181 (229)
T 3u9g_A          158 KGEGRKQTCGQPQPCERLHI--------------------------------------------------------CEHF  181 (229)
T ss_dssp             CCSSSCCSCSSSSCCCSBCS--------------------------------------------------------CHHH
T ss_pred             CCCCCCCcCCCCCCCcceec--------------------------------------------------------cchh
Confidence            53    58999999998885                                                        9999


Q ss_pred             ccccCCCCCCCccCCCccc
Q 019627          239 TQGQCPFGEKCHFAHGQSE  257 (338)
Q Consensus       239 ~~G~C~~G~~C~FaHg~~e  257 (338)
                      ..|.|.| ..|.-.|...+
T Consensus       182 l~G~C~f-~~CkRsH~~~~  199 (229)
T 3u9g_A          182 TRGNCSY-LNCLRSHNLMD  199 (229)
T ss_dssp             HTTCCCC-SSCSSCCCTTS
T ss_pred             hcCCcCC-CCccCccCccC
Confidence            9999999 89999998743

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=96.14  E-value=0.0015  Score=45.23  Aligned_cols=27  Identities=30%  Similarity=0.699  Sum_probs=24.6

Q ss_pred             cccccccccc-cccCCCCCCCCcccCCC
Q 019627           91 FKTRLCAKFK-HGACRNGENCNFAHGME  117 (338)
Q Consensus        91 ~KT~lC~~f~-~G~C~~G~~C~FaH~~~  117 (338)
                      .++.||..|. -|.|++|.+|.++|+++
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCC
Confidence            3789999998 69999999999999986

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=95.85  E-value=0.002  Score=44.53  Aligned_cols=28  Identities=29%  Similarity=0.642  Sum_probs=25.1

Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCCC
Q 019627          153 HKMKLCKKFYNGEECPYGDRCNFLHEDP  180 (338)
Q Consensus       153 ~Kt~lCk~f~~~G~C~~G~~C~F~H~~~  180 (338)
                      .++.+|..|...|.|++|..|.++|+..
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCC
Confidence            3567999999999999999999999964

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=94.33  E-value=0.0028  Score=48.48  Aligned_cols=21  Identities=29%  Similarity=0.705  Sum_probs=17.1

Q ss_pred             cccccccccccCCCCCCCCcccCC
Q 019627           93 TRLCAKFKHGACRNGENCNFAHGM  116 (338)
Q Consensus        93 T~lC~~f~~G~C~~G~~C~FaH~~  116 (338)
                      .+.|+|+..  |.+ ..|.|.|..
T Consensus         9 ~e~CKf~~~--Ctn-~~C~f~Hp~   29 (80)
T 2lhn_A            9 LEQCKFGTH--CTN-KRCKYRHAR   29 (80)
Confidence            467988875  989 999999954

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=93.19  E-value=0.017  Score=52.81  Aligned_cols=25  Identities=28%  Similarity=0.830  Sum_probs=22.2

Q ss_pred             ccCcccccccCCCCCCCccCCCccc
Q 019627          233 KLCIKWTQGQCPFGEKCHFAHGQSE  257 (338)
Q Consensus       233 ~lC~~f~~G~C~~G~~C~FaHg~~e  257 (338)
                      .+|.||.+|.|.+|+.|.|.|....
T Consensus        71 ~~C~ffakG~C~~G~~C~y~H~lPt   95 (240)
T 3u1l_A           71 FFCLFFAKGMCCLGPKCEYLHHIPD   95 (240)
T ss_dssp             SBCHHHHTTCCSCGGGCSSBBSCCC
T ss_pred             eEcCccccCCCCCCCCCCccCCCCC
Confidence            4899998899999999999998643

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=92.91  E-value=0.073  Score=48.12  Aligned_cols=47  Identities=26%  Similarity=0.670  Sum_probs=37.9

Q ss_pred             cccccccccc----cccCCCCCCCCcccCCCCcCCCCCCcccccCCCCCcccCCCCCCCCcchhhcccccccccccCCCC
Q 019627           91 FKTRLCAKFK----HGACRNGENCNFAHGMEDLRQPPPNWQELVGGGRAEEDRSSGGNWDDDQKIIHKMKLCKKFYNGEE  166 (338)
Q Consensus        91 ~KT~lC~~f~----~G~C~~G~~C~FaH~~~e~r~pp~~~~el~~~~r~~~~~~~~~~~~~~~~~~~Kt~lCk~f~~~G~  166 (338)
                      +=-++|.+|+    .|.|.+++.|...|                                          +|++| ..|.
T Consensus       149 lLPeiC~~YkG~g~~g~C~~~~~C~kLH------------------------------------------IC~~F-l~G~  185 (229)
T 3u9g_A          149 FLPEICKSYKGEGRKQTCGQPQPCERLH------------------------------------------ICEHF-TRGN  185 (229)
T ss_dssp             GSCCBCTTCCCSSSCCSCSSSSCCCSBC------------------------------------------SCHHH-HTTC
T ss_pred             cCchHHHHhCCCCCCCcCCCCCCCccee------------------------------------------ccchh-hcCC
Confidence            3447899993    25999999999888                                          79866 5689


Q ss_pred             CCCCCCCCCCCCCCc
Q 019627          167 CPYGDRCNFLHEDPA  181 (338)
Q Consensus       167 C~~G~~C~F~H~~~e  181 (338)
                      |.+ ..|+-+|+..+
T Consensus       186 C~f-~~CkRsH~~~~  199 (229)
T 3u9g_A          186 CSY-LNCLRSHNLMD  199 (229)
T ss_dssp             CCC-SSCSSCCCTTS
T ss_pred             cCC-CCccCccCccC
Confidence            999 89999999643

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=91.88  E-value=0.037  Score=50.59  Aligned_cols=25  Identities=28%  Similarity=0.716  Sum_probs=22.3

Q ss_pred             cccccccccccCCCCCCCCcccCCC
Q 019627           93 TRLCAKFKHGACRNGENCNFAHGME  117 (338)
Q Consensus        93 T~lC~~f~~G~C~~G~~C~FaH~~~  117 (338)
                      ..+|-||..|.|.+|+.|.|.|.+.
T Consensus        70 ~~~C~ffakG~C~~G~~C~y~H~lP   94 (240)
T 3u1l_A           70 LFFCLFFAKGMCCLGPKCEYLHHIP   94 (240)
T ss_dssp             CSBCHHHHTTCCSCGGGCSSBBSCC
T ss_pred             CeEcCccccCCCCCCCCCCccCCCC
Confidence            3499999999999999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	338
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	8e-11
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	5e-09
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	3e-06
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	8e-11
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	2e-10
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	5e-06
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	3e-10
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	3e-07
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	2e-06

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (130), Expect = 8e-11
 Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQSELQ 259
           +KT+LC  + + G C +GEKC FAHG  EL+
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAHGFHELR 34

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (117), Expect = 5e-09
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 91  FKTRLCAKF-KHGACRNGENCNFAHGMEDLR 120
           +KT LC  F + G C+ GE C FAHG  +LR
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAHGFHELR 34

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (96), Expect = 3e-06
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 154 KMKLCKKFYNGEECPYGDRCNFLH 177
           K +LC+ F     C YG++C F H
Sbjct: 5   KTELCRPFEESGTCKYGEKCQFAH 28

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (130), Expect = 8e-11
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 87  TNIFFKTRLCAKF-KHGACRNGENCNFAHGMEDLRQP 122
           T+  +KT LC  + + G CR G  C FAHG+ +LRQ 
Sbjct: 3   TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA 39

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (128), Expect = 2e-10
 Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)

Query: 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQSELQ 259
           +KT+LC  +++ G+C +G KC FAHG  EL+
Sbjct: 7   YKTELCRTYSESGRCRYGAKCQFAHGLGELR 37

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (96), Expect = 5e-06
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 154 KMKLCKKFYNGEECPYGDRCNFLH 177
           K +LC+ +     C YG +C F H
Sbjct: 8   KTELCRTYSESGRCRYGAKCQFAH 31

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (126), Expect = 3e-10
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQSE 257
           +KT+LC  +   G CP+G +CHF H   E
Sbjct: 6   YKTELCRTFHTIGFCPYGPRCHFIHNADE 34

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (105), Expect = 3e-07
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 153 HKMKLCKKFYNGEECPYGDRCNFLH 177
           +K +LC+ F+    CPYG RC+F+H
Sbjct: 6   YKTELCRTFHTIGFCPYGPRCHFIH 30

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 91  FKTRLCAKF-KHGACRNGENCNFAHGMED 118
           +KT LC  F   G C  G  C+F H  ++
Sbjct: 6   YKTELCRTFHTIGFCPYGPRCHFIHNADE 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	338
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	99.19
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	99.14
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.12
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	99.09
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.95
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.9
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	98.19
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.95
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	96.27
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.41
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	91.96
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	91.05

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=3.4e-12  Score=84.22  Aligned_cols=37  Identities=46%  Similarity=0.970  Sum_probs=33.0

Q ss_pred             Ccccccccccccccc-cccCCCCCCCCcccCCCCcCCC
Q 019627           86 ITNIFFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQP  122 (338)
Q Consensus        86 ~~~~~~KT~lC~~f~-~G~C~~G~~C~FaH~~~e~r~p  122 (338)
                      +++..|||++|++|. .|.|++|++|.|||+.+|||.+
T Consensus         2 t~~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   39 (40)
T d1m9oa_           2 TTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   39 (40)
T ss_dssp             CCSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CCCCccccccChhhhcCCcCCCCCCCCCCCCHHHhcCC
Confidence            346789999999997 6999999999999999999864

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=1.2e-11  Score=81.59  Aligned_cols=34  Identities=44%  Similarity=0.975  Sum_probs=31.9

Q ss_pred             CccccccCccc-ccccCCCCCCCccCCCccccccC
Q 019627          228 VYWKTKLCIKW-TQGQCPFGEKCHFAHGQSELQVI  261 (338)
Q Consensus       228 ~~~Kt~lC~~f-~~G~C~~G~~C~FaHg~~elr~~  261 (338)
                      ..|||++|++| ..|.|++|++|+||||..|||..
T Consensus         5 ~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   39 (40)
T d1m9oa_           5 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   39 (40)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CccccccChhhhcCCcCCCCCCCCCCCCHHHhcCC
Confidence            47999999999 78999999999999999999975

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=4.3e-12  Score=81.80  Aligned_cols=33  Identities=48%  Similarity=1.095  Sum_probs=30.5

Q ss_pred             cccccccccccc-cccCCCCCCCCcccCCCCcCC
Q 019627           89 IFFKTRLCAKFK-HGACRNGENCNFAHGMEDLRQ  121 (338)
Q Consensus        89 ~~~KT~lC~~f~-~G~C~~G~~C~FaH~~~e~r~  121 (338)
                      ..|||++|++|. .|.|++|++|+|||+.+|||.
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            569999999997 799999999999999999974

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=7.4e-12  Score=80.66  Aligned_cols=33  Identities=48%  Similarity=1.023  Sum_probs=30.8

Q ss_pred             CccccccCccc-ccccCCCCCCCccCCCcccccc
Q 019627          228 VYWKTKLCIKW-TQGQCPFGEKCHFAHGQSELQV  260 (338)
Q Consensus       228 ~~~Kt~lC~~f-~~G~C~~G~~C~FaHg~~elr~  260 (338)
                      ..|||++|++| ..|.|++|++|+||||..|||.
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            36999999999 7899999999999999999985

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=6.2e-11  Score=75.18  Aligned_cols=30  Identities=37%  Similarity=0.840  Sum_probs=27.3

Q ss_pred             cccccccccccc-cccCCCCCCCCcccCCCC
Q 019627           89 IFFKTRLCAKFK-HGACRNGENCNFAHGMED  118 (338)
Q Consensus        89 ~~~KT~lC~~f~-~G~C~~G~~C~FaH~~~e  118 (338)
                      ..|||++|++|. .|.|.||++|+|||+.+|
T Consensus         4 pkyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           4 PKYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             TTTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CCccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            468999999997 699999999999999875

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=9.2e-11  Score=74.38  Aligned_cols=29  Identities=48%  Similarity=1.117  Sum_probs=27.4

Q ss_pred             ccccccCccc-ccccCCCCCCCccCCCccc
Q 019627          229 YWKTKLCIKW-TQGQCPFGEKCHFAHGQSE  257 (338)
Q Consensus       229 ~~Kt~lC~~f-~~G~C~~G~~C~FaHg~~e  257 (338)
                      .|||+||++| ..|.|++|++|+||||..|
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            6999999999 8899999999999999876

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3.6e-07  Score=53.96  Aligned_cols=26  Identities=35%  Similarity=0.770  Sum_probs=23.7

Q ss_pred             cccccCcccccccCCCCCCCccCCCc
Q 019627          230 WKTKLCIKWTQGQCPFGEKCHFAHGQ  255 (338)
Q Consensus       230 ~Kt~lC~~f~~G~C~~G~~C~FaHg~  255 (338)
                      .|..+|++|.+|+|.+|++|.|.|.+
T Consensus         4 kkkelCKfYvqGyCtrgenC~ymH~e   29 (29)
T d2cqea2           4 KKRELCKFYITGFCARAENCPYMHGD   29 (29)
T ss_dssp             CCCSBCTTTTTTCCSCSTTCSSBSSS
T ss_pred             hhhhhhhhheeeeecCCcCcccccCC
Confidence            56789999999999999999999974

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.8e-06  Score=50.96  Aligned_cols=24  Identities=42%  Similarity=0.956  Sum_probs=22.9

Q ss_pred             ccccccccccccCCCCCCCCcccC
Q 019627           92 KTRLCAKFKHGACRNGENCNFAHG  115 (338)
Q Consensus        92 KT~lC~~f~~G~C~~G~~C~FaH~  115 (338)
                      |.++|+||.+|.|.+|++|.|.|.
T Consensus         5 kkelCKfYvqGyCtrgenC~ymH~   28 (29)
T d2cqea2           5 KRELCKFYITGFCARAENCPYMHG   28 (29)
T ss_dssp             CCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred             hhhhhhhheeeeecCCcCcccccC
Confidence            778999999999999999999996

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.00063  Score=46.39  Aligned_cols=21  Identities=33%  Similarity=0.930  Sum_probs=18.8

Q ss_pred             cccccccc-cCCCCCCCCcccC
Q 019627           95 LCAKFKHG-ACRNGENCNFAHG  115 (338)
Q Consensus        95 lC~~f~~G-~C~~G~~C~FaH~  115 (338)
                      .|++|-+| .|-.|++|+|+|.
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~   23 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHD   23 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCC
T ss_pred             CcceeecCCcccCCCcccccCC
Confidence            59999865 9999999999994

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0023  Score=43.55  Aligned_cols=22  Identities=36%  Similarity=0.889  Sum_probs=19.5

Q ss_pred             cCccc-ccccCCCCCCCccCCCc
Q 019627          234 LCIKW-TQGQCPFGEKCHFAHGQ  255 (338)
Q Consensus       234 lC~~f-~~G~C~~G~~C~FaHg~  255 (338)
                      .|++| ..+.|-.|++|+|.|..
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CcceeecCCcccCCCcccccCCc
Confidence            49999 67799999999999964

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.96  E-value=0.02  Score=35.12  Aligned_cols=26  Identities=31%  Similarity=0.735  Sum_probs=23.6

Q ss_pred             ccccccccccCCCCCCCCCCCCCCCC
Q 019627          153 HKMKLCKKFYNGEECPYGDRCNFLHE  178 (338)
Q Consensus       153 ~Kt~lCk~f~~~G~C~~G~~C~F~H~  178 (338)
                      ..+.+|..|...|.|+.|..|..+|+
T Consensus        11 ~~~~iC~~FsAyGWCP~G~qCp~SHd   36 (37)
T d2fc6a1          11 HPTSICDNFSAYGWCPLGPQCPQSHD   36 (37)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred             CccchhhhhhhccccCCCCCCcccCc
Confidence            45679999999999999999999997

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.05  E-value=0.027  Score=34.56  Aligned_cols=25  Identities=32%  Similarity=0.834  Sum_probs=22.3

Q ss_pred             cccccCccc-ccccCCCCCCCccCCC
Q 019627          230 WKTKLCIKW-TQGQCPFGEKCHFAHG  254 (338)
Q Consensus       230 ~Kt~lC~~f-~~G~C~~G~~C~FaHg  254 (338)
                      -.+.+|..| .-|.|+.|..|.-.|.
T Consensus        11 ~~~~iC~~FsAyGWCP~G~qCp~SHd   36 (37)
T d2fc6a1          11 HPTSICDNFSAYGWCPLGPQCPQSHD   36 (37)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred             CccchhhhhhhccccCCCCCCcccCc
Confidence            356789999 9999999999999986