Citrus Sinensis ID: 019836

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----

MLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL

ccccccccccccccccccccccccEEEEEEEccccEEEEEEEcccccEEEEEEEEccccccEEEEEEcccEEEEEEccEEEcHHHHHHcccEEEEEEccccEEEEEEEccccccccEEEEEccccEEEEEEccccccccEEEEEEEEEcccccccccccccccccccccEEEEEEEEcccccEEEEEEccccccccEEccccccccccEEEEEEEccccccccEEEEccccccccccEEEEEcccEEEEEEcccccEEcccEEEEcccccccccccEEEEEEEEEccccEEEEEEEEccccccccEEEEEcccccccccccccccHHHHHHHHcc

cccccccccccEEEccccccccccEEEEEccccccEEEEEEEccccccccccccccccccccccEEEcccEEEEccccEEEcHHHHHcccccEEEEccccccEEEEEEccccccccEEEEEccccEEEEEEEccccccccEEEEEEccccccccccccccccccHcccccEEEEEEEcccccEEEEEccccccccccccHcHcccccEEEEEEEccccccEEEEEEEEcccccccccEEEEccccEEEEEEEcccccccccEEEcccccccccccccEEEEEEEccccccEEEEEEEccccccccEEEEEccccccccccEEEccHHHHHHHHcc

mldydkrlnhpftahpkidpytdemftfgytqtppyvtyrviskdgfmhdpvpitmsapimmhdfaITENYAIfldlpmcfrQKEMVKEnkliyafdptikarfgvlpryarddlqirwfelpncyifhnanaweeeEDEVVLITCrvrnpdldmfngplketleDQTTELYEMRFNMktglasqkklspacvdfprinehymgrkqryVYGSILENIAKVTGMIKfdlraepetgktklevggnvkgifdlgpgrfgseavfvprepsstseeddgylIFHVHDENTGKSAVYVIDAktmsadpvavielphrvpygfhgiFLSEEQLEELAKL

mldydkrlnhpftahpkidpytDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRnpdldmfngplketleDQTTELYEMRFNMKTglasqkklspACVDFPRINehymgrkqryvyGSILENIAKVTGMIKFDLRAEPetgktklevggnvKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL

************TAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNA*********VVLITCRVRNPDLDMFNGPLKETL**QTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFV************GYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLS**********

MLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVP*********DDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		335	2.2.26 [Sep-21-2011]
O65572		538	Carotenoid 9,10(9',10')-c	yes	no	0.976	0.607	0.782	1e-155
Q8LP17		541	Carotenoid 9,10(9',10')-c	N/A	no	0.997	0.617	0.755	1e-153
Q94IR2		543	Carotenoid 9,10(9',10')-c	N/A	no	0.997	0.615	0.749	1e-153
Q84KG5		546	Carotenoid 9,10(9',10')-c	N/A	no	0.982	0.602	0.775	1e-152
O49675		595	Probable carotenoid cleav	no	no	0.934	0.526	0.369	2e-54
Q9M9F5		657	9-cis-epoxycarotenoid dio	no	no	0.916	0.467	0.388	4e-54
Q84K96		369	Zeaxanthin 7,8(7',8')-cle	N/A	no	0.895	0.813	0.390	5e-53
O24592		604	9-cis-epoxycarotenoid dio	N/A	no	0.925	0.513	0.356	6e-53
Q9C6Z1		589	Probable 9-cis-epoxycarot	no	no	0.916	0.521	0.360	7e-51
Q9LRR7		599	9-cis-epoxycarotenoid dio	no	no	0.913	0.510	0.353	1e-49

>sp\|O65572\|CCD1_ARATH Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2	Back alignment and function desciption

 Score =  546 bits (1407), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 259/331 (78%), Positives = 293/331 (88%), Gaps = 4/331 (1%)

Query: 1   MLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPI 60
           ++DYDKRL H FTAHPK+DP T EMFTFGY+ TPPY+TYRVISKDG MHDPVPIT+S PI
Sbjct: 208 IIDYDKRLTHSFTAHPKVDPVTGEMFTFGYSHTPPYLTYRVISKDGIMHDPVPITISEPI 267

Query: 61  MMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWF 120
           MMHDFAITE YAIF+DLPM FR KEMVKE K+IY+FDPT KARFGVLPRYA+D+L IRWF
Sbjct: 268 MMHDFAITETYAIFMDLPMHFRPKEMVKEKKMIYSFDPTKKARFGVLPRYAKDELMIRWF 327

Query: 121 ELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKT 180
           ELPNC+IFHNANAW EEEDEVVLITCR+ NPDLDM +G +KE LE+   ELYEMRFNMKT
Sbjct: 328 ELPNCFIFHNANAW-EEEDEVVLITCRLENPDLDMVSGKVKEKLENFGNELYEMRFNMKT 386

Query: 181 GLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKL 240
           G ASQKKLS + VDFPRINE Y G+KQRYVYG+IL++IAKVTG+IKFDL AE ETGK  L
Sbjct: 387 GSASQKKLSASAVDFPRINECYTGKKQRYVYGTILDSIAKVTGIIKFDLHAEAETGKRML 446

Query: 241 EVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKT 300
           EVGGN+KGI+DLG GR+GSEA++VPRE   T+EEDDGYLIF VHDENTGKS V VIDAKT
Sbjct: 447 EVGGNIKGIYDLGEGRYGSEAIYVPRE---TAEEDDGYLIFFVHDENTGKSCVTVIDAKT 503

Query: 301 MSADPVAVIELPHRVPYGFHGIFLSEEQLEE 331
           MSA+PVAV+ELPHRVPYGFH +F++EEQL+E
Sbjct: 504 MSAEPVAVVELPHRVPYGFHALFVTEEQLQE 534

Cleaves a variety of carotenoids symmetrically at both the 9-10 and 9'-10' double bonds. Active on beta,beta-carotene, lutein, zeaxanthin, all-trans-violaxanthin, 9-cis-violaxanthin and 9'-cis-neoxanthin. With most substrates, the carotenoid is symmetrically cleaved. Probably not involved in abscisic acid biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: nEC: 4

>sp\|Q8LP17\|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1	Back alignment and function description

>sp\|Q94IR2\|CCD1_PHAVU Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1	Back alignment and function description

>sp\|Q84KG5\|CCD_CROSA Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1	Back alignment and function description

>sp\|O49675\|CCD4_ARATH Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1	Back alignment and function description

>sp\|Q9M9F5\|NCED9_ARATH 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1	Back alignment and function description

>sp\|Q84K96\|ZCD_CROSA Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1	Back alignment and function description

>sp\|O24592\|NCED1_MAIZE 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2	Back alignment and function description

>sp\|Q9C6Z1\|NCED5_ARATH Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1	Back alignment and function description

>sp\|Q9LRR7\|NCED3_ARATH 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		335
307592509		552	carotenoid cleavage dioxygenase 1 [Manih	0.997	0.605	0.794	1e-158
134285450		548	9-cis-epoxycarotenoid dioxygenase [Casta	0.997	0.609	0.794	1e-158
163881523		552	carotenoid cleavage dioxygenase 1 [Rosa	0.997	0.605	0.770	1e-157
449436307		547	PREDICTED: carotenoid 9,10(9',10')-cleav	0.997	0.610	0.767	1e-156
449489170		379	PREDICTED: carotenoid 9,10(9',10')-cleav	0.997	0.881	0.767	1e-156
224055184		545	predicted protein [Populus trichocarpa]	0.997	0.612	0.773	1e-156
387763758		546	carotenoid cleavage dioxygenase 1 [Vitis	0.997	0.611	0.779	1e-156
61654494		542	9,10[9',10']carotenoid cleavage dioxygen	0.997	0.616	0.779	1e-155
76560796		548	carotenoid cleavage dioxygenase 1 [Coffe	0.997	0.609	0.773	1e-155
225450111		546	PREDICTED: carotenoid 9,10(9',10')-cleav	0.997	0.611	0.776	1e-155

>gi\|307592509\|gb\|ADN65332.1\| carotenoid cleavage dioxygenase 1 [Manihot esculenta]	Back alignment and taxonomy information

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 266/335 (79%), Positives = 295/335 (88%), Gaps = 1/335 (0%)

Query: 1   MLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPI 60
           MLDYDKRL H FTAHPK+DP T EMFTFGY   PPY+TYRVISKDG MHDPVPIT+S PI
Sbjct: 219 MLDYDKRLKHSFTAHPKVDPNTGEMFTFGYAHEPPYITYRVISKDGVMHDPVPITISDPI 278

Query: 61  MMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWF 120
           MMHDFAITENYAIFLDLP+ FR KEMVK+ KLI+ FD T KARFGVLPRYA+DD QIRWF
Sbjct: 279 MMHDFAITENYAIFLDLPLYFRPKEMVKDKKLIFTFDATKKARFGVLPRYAKDDHQIRWF 338

Query: 121 ELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKT 180
           ELPNC+IFHNANAWEEE DEVVLITCR+ NPDLDM +G +KE LE+   ELYEMRFNMKT
Sbjct: 339 ELPNCFIFHNANAWEEE-DEVVLITCRLENPDLDMVSGNVKEKLENFANELYEMRFNMKT 397

Query: 181 GLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKL 240
           G+ASQK+LS   VDFPR+NE Y GRKQRYVYG+IL++IAKVTG+IKFDL AEP+ GKTKL
Sbjct: 398 GVASQKRLSAPAVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPQQGKTKL 457

Query: 241 EVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKT 300
           EVGGN+KGIFDLGPGRFGSEAVFVPREP ++SEEDDGYLIF  HDENTGKS+V VIDAKT
Sbjct: 458 EVGGNIKGIFDLGPGRFGSEAVFVPREPGTSSEEDDGYLIFFTHDENTGKSSVNVIDAKT 517

Query: 301 MSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL 335
           MS+DPVAV+ELPHRVPYGFH  F++EEQL+  A L
Sbjct: 518 MSSDPVAVVELPHRVPYGFHAFFVTEEQLQAQATL 552

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|134285450\|gb\|ABO69703.1\| 9-cis-epoxycarotenoid dioxygenase [Castanea mollissima]	Back alignment and taxonomy information

>gi\|163881523\|gb\|ABY47994.1\| carotenoid cleavage dioxygenase 1 [Rosa x damascena]	Back alignment and taxonomy information

>gi\|449436307\|ref\|XP_004135934.1\| PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449489170\|ref\|XP_004158236.1\| PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224055184\|ref\|XP_002298430.1\| predicted protein [Populus trichocarpa] gi\|222845688\|gb\|EEE83235.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|387763758\|gb\|AFJ94677.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|61654494\|gb\|AAX48772.1\| 9,10[9',10']carotenoid cleavage dioxygenase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|76560796\|gb\|ABA43900.1\| carotenoid cleavage dioxygenase 1 [Coffea canephora]	Back alignment and taxonomy information

>gi\|225450111\|ref\|XP_002278750.1\| PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Vitis vinifera] gi\|297736256\|emb\|CBI24894.3\| unnamed protein product [Vitis vinifera] gi\|387763762\|gb\|AFJ94679.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera] gi\|387763766\|gb\|AFJ94681.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		335
TAIR\|locus:2087418		538	CCD1 "carotenoid cleavage diox	0.976	0.607	0.782	1.4e-142
TAIR\|locus:2134796		595	NCED4 "nine-cis-epoxycarotenoi	0.934	0.526	0.369	6.3e-53
TAIR\|locus:2093751		577	NCED6 "nine-cis-epoxycarotenoi	0.725	0.421	0.335	5.3e-50
TAIR\|locus:2202492		589	NCED5 "nine-cis-epoxycarotenoi	0.907	0.516	0.374	3.2e-49
TAIR\|locus:2091652		599	NCED3 "nine-cis-epoxycarotenoi	0.835	0.467	0.355	9.1e-45
TAIR\|locus:2124489		583	NCED2 "nine-cis-epoxycarotenoi	0.925	0.531	0.345	3.9e-44
TAIR\|locus:2032085		657	NCED9 "nine-cis-epoxycarotenoi	0.728	0.371	0.374	4.8e-38
UNIPROTKB\|O06785		501	MT0683 "Carotenoid cleavage ox	0.653	0.437	0.304	1.4e-34
UNIPROTKB\|Q53353		485	Q53353 "Lignostilbene-alpha,be	0.946	0.653	0.284	6.1e-26
ASPGD\|ASPL0000046682		480	AN1643 [Emericella nidulans (t	0.913	0.637	0.296	1.3e-23

TAIR\|locus:2087418 CCD1 "carotenoid cleavage dioxygenase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1394 (495.8 bits), Expect = 1.4e-142, P = 1.4e-142
 Identities = 259/331 (78%), Positives = 293/331 (88%)

Query:     1 MLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPI 60
             ++DYDKRL H FTAHPK+DP T EMFTFGY+ TPPY+TYRVISKDG MHDPVPIT+S PI
Sbjct:   208 IIDYDKRLTHSFTAHPKVDPVTGEMFTFGYSHTPPYLTYRVISKDGIMHDPVPITISEPI 267

Query:    61 MMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWF 120
             MMHDFAITE YAIF+DLPM FR KEMVKE K+IY+FDPT KARFGVLPRYA+D+L IRWF
Sbjct:   268 MMHDFAITETYAIFMDLPMHFRPKEMVKEKKMIYSFDPTKKARFGVLPRYAKDELMIRWF 327

Query:   121 ELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKT 180
             ELPNC+IFHNANAWEEE DEVVLITCR+ NPDLDM +G +KE LE+   ELYEMRFNMKT
Sbjct:   328 ELPNCFIFHNANAWEEE-DEVVLITCRLENPDLDMVSGKVKEKLENFGNELYEMRFNMKT 386

Query:   181 GLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKL 240
             G ASQKKLS + VDFPRINE Y G+KQRYVYG+IL++IAKVTG+IKFDL AE ETGK  L
Sbjct:   387 GSASQKKLSASAVDFPRINECYTGKKQRYVYGTILDSIAKVTGIIKFDLHAEAETGKRML 446

Query:   241 EVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKT 300
             EVGGN+KGI+DLG GR+GSEA++VPRE   T+EEDDGYLIF VHDENTGKS V VIDAKT
Sbjct:   447 EVGGNIKGIYDLGEGRYGSEAIYVPRE---TAEEDDGYLIFFVHDENTGKSCVTVIDAKT 503

Query:   301 MSADPVAVIELPHRVPYGFHGIFLSEEQLEE 331
             MSA+PVAV+ELPHRVPYGFH +F++EEQL+E
Sbjct:   504 MSAEPVAVVELPHRVPYGFHALFVTEEQLQE 534

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0016118 "carotenoid catabolic process" evidence=IDA

GO:0045549 "9-cis-epoxycarotenoid dioxygenase activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0016121 "carotene catabolic process" evidence=IMP

GO:0016124 "xanthophyll catabolic process" evidence=IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

TAIR\|locus:2134796 NCED4 "nine-cis-epoxycarotenoid dioxygenase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2093751 NCED6 "nine-cis-epoxycarotenoid dioxygenase 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202492 NCED5 "nine-cis-epoxycarotenoid dioxygenase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091652 NCED3 "nine-cis-epoxycarotenoid dioxygenase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124489 NCED2 "nine-cis-epoxycarotenoid dioxygenase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2032085 NCED9 "nine-cis-epoxycarotenoid dioxygenase 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|O06785 MT0683 "Carotenoid cleavage oxygenase" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|Q53353 Q53353 "Lignostilbene-alpha,beta-dioxygenase isozyme I" [Sphingomonas paucimobilis (taxid:13689)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000046682 AN1643 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84KG5	CCD_CROSA	1, ., 1, 4, ., 9, 9, ., n, 4	0.7757	0.9820	0.6025	N/A	no
Q8LP17	CCD1_PEA	1, ., 1, 4, ., 9, 9, ., n, 4	0.7552	0.9970	0.6173	N/A	no
O65572	CCD1_ARATH	1, ., 1, 4, ., 9, 9, ., n, 4	0.7824	0.9761	0.6078	yes	no
Q94IR2	CCD1_PHAVU	1, ., 1, 4, ., 9, 9, ., n, 4	0.7492	0.9970	0.6151	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.99	0.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.10080001	annotation not avaliable (539 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_scaffold_40000045	9-cis-epoxycarotenoid dioxygenase (351 aa)	•	•	0.503
	eugene3.00400044	hypothetical protein (263 aa)	•		0.495

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		335
PLN02491		545	PLN02491, PLN02491, carotenoid 9,10(9',10')-cleava	0.0
pfam03055		469	pfam03055, RPE65, Retinal pigment epithelial membr	1e-109
PLN02258		590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	1e-88
COG3670		490	COG3670, COG3670, Lignostilbene-alpha,beta-dioxyge	1e-79
PLN02969		610	PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen	5e-11

>gnl\|CDD\|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

 Score =  626 bits (1617), Expect = 0.0
 Identities = 272/335 (81%), Positives = 299/335 (89%), Gaps = 1/335 (0%)

Query: 1   MLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPI 60
           +LDYDKRL H FTAHPK+DP+T EMFTFGY+  PPY+TYRVISKDG MHDPVPIT+S PI
Sbjct: 212 LLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSHEPPYITYRVISKDGAMHDPVPITISEPI 271

Query: 61  MMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWF 120
           MMHDFAITENYAIF+DLP+ FR KEMVKE K IY FD T KARFGVLPRYA+D+L IRWF
Sbjct: 272 MMHDFAITENYAIFMDLPLYFRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELMIRWF 331

Query: 121 ELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKT 180
           ELPNC+IFHNANAWEEE DEVVLITCR+ NPDLDM NG +KE LE+   ELYEMRFNMKT
Sbjct: 332 ELPNCFIFHNANAWEEE-DEVVLITCRLENPDLDMVNGKVKEKLENFGNELYEMRFNMKT 390

Query: 181 GLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKL 240
           G ASQKKLS + VDFPR+NE Y GRKQRYVYG+IL++IAKVTG+IKFDL AEPETGK KL
Sbjct: 391 GAASQKKLSASAVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKL 450

Query: 241 EVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKT 300
           EVGGNVKGIFDLGPGRFGSEA+FVPREP +TSEEDDGYLIF VHDENTGKS+V VIDAKT
Sbjct: 451 EVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENTGKSSVNVIDAKT 510

Query: 301 MSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL 335
           MSADPVAV+ELPHRVPYGFH  F++EEQL+E AKL
Sbjct: 511 MSADPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL 545

Length = 545

>gnl\|CDD\|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein	Back alignment and domain information

>gnl\|CDD\|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

>gnl\|CDD\|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		335
PLN02491		545	carotenoid 9,10(9',10')-cleavage dioxygenase	100.0
PLN02258		590	9-cis-epoxycarotenoid dioxygenase NCED	100.0
COG3670		490	Lignostilbene-alpha,beta-dioxygenase and related e	100.0
PF03055		486	RPE65: Retinal pigment epithelial membrane protein	100.0
PLN02969		610	9-cis-epoxycarotenoid dioxygenase	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	99.54

>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

Probab=100.00  E-value=5.3e-88  Score=676.49  Aligned_cols=334  Identities=81%  Similarity=1.341  Sum_probs=295.0

Q ss_pred             CCCCCCCCCCCCCCCCcccCCCCcEEEEEeecCCCcEEEEEEcCCCCeEeeEEEecCCcccccccccCCCEEEEeeCCee
Q 019836            1 MLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMC   80 (335)
Q Consensus         1 ~~d~~~~l~~~ftAHPk~Dp~tG~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~iHDfavTeny~V~~~~P~~   80 (335)
                      ++||+|.|..+||||||+||.||||+||||+..+++++|++++++|++.+.+++++|.++|||||||||||+||+++|+.
T Consensus       212 ~~df~g~l~~~~TAHPk~DP~TGel~~fgy~~~~p~~~y~~~~~~G~~~~~v~i~l~~~~~~HDFaiTeny~Vf~~~Pl~  291 (545)
T PLN02491        212 LLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSHEPPYITYRVISKDGAMHDPVPITISEPIMMHDFAITENYAIFMDLPLY  291 (545)
T ss_pred             ecccCCccCcccccCccCcCCCCCEEEEEecCCCCcEEEEEECCCCcCcceeEeecCCCceeeeeEecCCEEEEEECCcc
Confidence            36899999889999999999999999999998778999999999999999999999999999999999999999999999


Q ss_pred             ecHHHHHhcCceeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcCccceecCCCeEEEEEEecCCCCCccCCCCc
Q 019836           81 FRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPL  160 (335)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~vipR~~~~~~~v~~~~~~~~f~fH~~NA~E~~d~~ivvd~~~~~~~~~~~~~~~~  160 (335)
                      +++.+|+++++.++.|+|++++||+||||++++.+.++||++|+||+||++||||++ |+||+|.|+++++++....+..
T Consensus       292 ~~~~~~~~~~~~~~~~d~~~~~r~gVipR~~~~~~~irw~e~~~~f~fH~~NA~Ee~-~~Ivvd~~~~~~~~~~~~~~~~  370 (545)
T PLN02491        292 FRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAWEEE-DEVVLITCRLENPDLDMVNGKV  370 (545)
T ss_pred             cCHHHHhhCCCceeEECCCCCcEEEEEECCCCCCCceEEEEcCCceEeecCCccccC-CeEEEEEeccCCCccccccccc
Confidence            999999887778899999999999999998755568999999999999999999988 8999999999876543222222


Q ss_pred             cccccCCcceEEEEEEeCCCCceeEEecCCCCccCcccCCCCCCCcccEEEeeecCCCCCcCeEEEEeccCCCcccceee
Q 019836          161 KETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKL  240 (335)
Q Consensus       161 ~~~~~~~~~~l~R~~idl~~g~~~~~~l~~~~~EfP~in~~~~g~~~ry~Y~~~~~~~~~~~~l~k~D~~~~~~~~~~~~  240 (335)
                      .+......++|+||||||++|+++++.|++.++|||+||+++.||+|||+|++..+....+++|+|+|+++++.+++.+.
T Consensus       371 ~~~~~~~~~~l~r~ridl~tg~~~~~~l~~~~~EfP~In~~~~Grk~ry~Y~~~~~~~~~~~gl~K~D~~t~~~~g~~~~  450 (545)
T PLN02491        371 KEKLENFGNELYEMRFNMKTGAASQKKLSASAVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKL  450 (545)
T ss_pred             cccccccCceEEEEEEECCCCceeeeccCCcccccCccCHHHCCCcccEEEEeccCCccCcCeEEEEEecccccCCcccc
Confidence            22222346899999999999999999999999999999999999999999999877666789999999997543344333


Q ss_pred             ecCCceeeEEEcCCCCcccccEEeeCCCCCCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCCCceEEEEcCCcCCCCcc
Q 019836          241 EVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFH  320 (335)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~EPvFVPr~~~~~~~EdDG~lL~~v~d~~~~~s~L~IlDA~~l~~gPVAr~~LP~~iP~GfH  320 (335)
                      +.+++..+.|++|+++|+|||+||||+++++++|||||||++|+|..+++|+|+||||++|++|||||++||+|||+|||
T Consensus       451 ~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~~~~EDDG~ll~~V~d~~~~~S~l~VlDAk~~~~~pVA~v~LP~rVP~GfH  530 (545)
T PLN02491        451 EVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFH  530 (545)
T ss_pred             ccccceeEEEEcCCCccccCCEEecCCCCCCcccCCcEEEEEEEcCCCCcceEEEEeCCCCCCCeeEEEECCCCCCCCcc
Confidence            33444456899999999999999999754225899999999999999999999999999999999999999999999999


Q ss_pred             ccccChhhHHHhhcC
Q 019836          321 GIFLSEEQLEELAKL  335 (335)
Q Consensus       321 G~w~~~~~~~~~~~~  335 (335)
                      |+|+++++|.+|+.+
T Consensus       531 G~fv~~~~l~~~~~~  545 (545)
T PLN02491        531 AFFVTEEQLQEQAKL  545 (545)
T ss_pred             ccCcCHHHHHHhhcC
Confidence            999999999998754

>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection	Back alignment and domain information

>PLN02969 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		335
3npe_A		529	Structure Of Vp14 In Complex With Oxygen Length = 5		2e-54
2biw_A		490	Crystal Structure Of Apocarotenoid Cleavage Oxygena		3e-24

>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen Length = 529

Back alignment and structure

Iteration: 1

Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 121/339 (35%), Positives = 185/339 (54%), Gaps = 29/339 (8%) Query: 3 DYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTP-PYVTYRVISKDGFMHDPVPITMSAPIM 61 D+D +L AHPK+DP T E+ Y PY+ Y DG D V I + P M Sbjct: 211 DFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTM 270 Query: 62 MHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFE 121 +HDFAITEN + D + F+ +EM++ + D +RFGVLP++A D ++ W + Sbjct: 271 IHDFAITENLVVVPDHQVVFKLQEMLRGGSPV-VLDAAKTSRFGVLPKHAADASEMAWVD 329 Query: 122 LPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTG 181 +P+C+ FH NAWE+E V++ P +FN E+ E + L E+R + +TG Sbjct: 330 VPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFN----ESDERLESVLTEIRLDARTG 385 Query: 182 LASQKKLSPAC----VDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGK 237 ++++ + P ++ +N + +GR+ RY Y ++ E KV+G K DL TG+ Sbjct: 386 RSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDL----STGE 441 Query: 238 -TKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSST--SEEDDGYLIFHVHDENTGKSAVY 294 TK F+ G GRFG E FVP +P++ EDDGY++ VHDE G S + Sbjct: 442 LTK----------FEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELL 491 Query: 295 VIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELA 333 V++A M + A ++LP RVP+GFHG F++ ++LE A Sbjct: 492 VVNAADMRLE--ATVQLPSRVPFGFHGTFITGQELEAQA 528

PyMOL of 3npe

>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From Synechocystis, Native Enzyme Length = 490

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		335
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	1e-102
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	1e-100
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	2e-69
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490	Back alignment and structure

 Score =  309 bits (792), Expect = e-102
 Identities = 80/338 (23%), Positives = 145/338 (42%), Gaps = 36/338 (10%)

Query: 3   DYDKRL--NHPFTAHPKIDPYTD----EMFTFGY---TQTPPYVTYRVISKDGFMHDPVP 53
           D    L    P +AHP+IDP +     +     +   +     +T   +   G +     
Sbjct: 169 DLGGILAEGQPLSAHPRIDPASTFDGGQPCYVTFSIKSSLSSTLTLLELDPQGKLLRQKT 228

Query: 54  ITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKL---IYAFDPTIKARFGVLPRY 110
            T      +HDFAIT +YAIFL   +       +   +       F P   A+  ++PR 
Sbjct: 229 ETFPGFAFIHDFAITPHYAIFLQNNVTLNGLPYLFGLRGAGECVQFHPDKPAQIILVPR- 287

Query: 111 ARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQ--T 168
             D  +I+   +   ++FH+ANA+EE   +++L +    +      +G  + T  D    
Sbjct: 288 --DGGEIKRIPVQAGFVFHHANAFEEN-GKIILDSICYNSLPQVDTDGDFRSTNFDNLDP 344

Query: 169 TELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENI---AKVTGMI 225
            +L+    +       ++ +   C +FP ++   +GR  RYVY     +    A +  ++
Sbjct: 345 GQLWRFTIDPAAATVEKQLMVSRCCEFPVVHPQQVGRPYRYVYMGAAHHSTGNAPLQAIL 404

Query: 226 KFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHD 285
           K DL    E+G            +    P  F  E +FVPR       EDDG+L+  ++ 
Sbjct: 405 KVDL----ESGTET---------LRSFAPHGFAGEPIFVPRPGGV--AEDDGWLLCLIYK 449

Query: 286 ENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIF 323
            +  +S + ++DA+ ++A  +A ++L H +PY  HG +
Sbjct: 450 ADLHRSELVILDAQDITAPAIATLKLKHHIPYPLHGSW 487

PyMOL of 2biw

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Length = 529	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		335
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	100.0
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	100.0
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	100.0

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}	Back alignment and structure

Probab=100.00  E-value=1.3e-82  Score=636.76  Aligned_cols=311  Identities=38%  Similarity=0.693  Sum_probs=277.0

Q ss_pred             CCCCCCCCCCCCCCCcccCCCCcEEEEEeecC-CCcEEEEEEcCCCCeEeeEEEecCCcccccccccCCCEEEEeeCCee
Q 019836            2 LDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQT-PPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMC   80 (335)
Q Consensus         2 ~d~~~~l~~~ftAHPk~Dp~tG~~~~~g~~~~-~~~~~~~~~~~~g~~~~~~~~~~p~~~~iHDfavTeny~V~~~~P~~   80 (335)
                      +||+|.|..+||||||+||.||||++|+|+.. +++++|++++++|++.+.+++++|.++|||||||||||+||+++|+.
T Consensus       210 ~d~~g~l~~~~tAHPk~Dp~TGel~~f~y~~~~~p~~~~~~~~~~G~~~~~~~i~~~~p~~~HDFaiTenyvVf~~~Pl~  289 (529)
T 3npe_A          210 YDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVV  289 (529)
T ss_dssp             CCGGGCCCSCCCSCCEECTTTCCEEEEECCSSSSCCCEEEEECTTCCBCCCEECCCSSCBCCCCCEECSSEEEEEECSEE
T ss_pred             eccCCccCCcccccCcCCCCCCcEEEEEeecCCCCcEEEEEECCCCCEEEEEEEeCCCCceEeeEEecCCeEEEEeCCeE
Confidence            68999999999999999999999999999975 48999999999999998889999999999999999999999999999


Q ss_pred             ecHHHHHhcCceeeEEcCCCCcEEEEEeCCCCCCCceEEEEcCCeeEEcCccceecCC-CeEEEEEEecCCCCCccCCCC
Q 019836           81 FRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEE-DEVVLITCRVRNPDLDMFNGP  159 (335)
Q Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~vipR~~~~~~~v~~~~~~~~f~fH~~NA~E~~d-~~ivvd~~~~~~~~~~~~~~~  159 (335)
                      +|+.+|+.| +.++.|+|++++||+||||++++.+.++||++|+||+||++||||+++ |+||+|.|++.+.+..+.   
T Consensus       290 ~~~~~~~~g-~~~~~~~p~~~tr~~VipR~~~~~~~vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~~~~---  365 (529)
T 3npe_A          290 FKLQEMLRG-GSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFN---  365 (529)
T ss_dssp             ECGGGGTTT-CCSEEECTTSCCEEEEEETTCSSGGGCEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCCSCC---
T ss_pred             EcHHHHhCC-CCceEECCCCCcEEEEEECCCCCCCceEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchhhhh---
Confidence            999999875 578999999999999999997656689999999999999999999853 789998888755332110   


Q ss_pred             ccccccCCcceEEEEEEeCCCCceeEEecC----CCCccCcccCCCCCCCcccEEEeeecCCCCCcCeEEEEeccCCCcc
Q 019836          160 LKETLEDQTTELYEMRFNMKTGLASQKKLS----PACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPET  235 (335)
Q Consensus       160 ~~~~~~~~~~~l~R~~idl~~g~~~~~~l~----~~~~EfP~in~~~~g~~~ry~Y~~~~~~~~~~~~l~k~D~~~~~~~  235 (335)
                        .......++|+||+||+.+|+++++.+.    +.++|||+||+++.||+|||+|+++.++...+++|+|+|++|++. 
T Consensus       366 --~~~~~~~~~l~r~rl~l~~g~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~tg~~-  442 (529)
T 3npe_A          366 --ESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGEL-  442 (529)
T ss_dssp             --SSSSCCCCEEEEEEECTTTCCEEEEESSCSSSCCCEEEEEECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTTCCE-
T ss_pred             --ccchhhccceEEEEEcCCCCCEEeEEecccccCccccCceEChhHcCCccceEEEeccCCCCCcceEEEEecCCCce-
Confidence              0123456899999999999999888877    488999999999999999999999987666789999999998773 


Q ss_pred             cceeeecCCceeeEEEcCCCCcccccEEeeCCCC--CCCCCCCcEEEEEEEeCCCCceEEEEEeCCCCCCCceEEEEcCC
Q 019836          236 GKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPS--STSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPH  313 (335)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~EPvFVPr~~~--~~~~EdDG~lL~~v~d~~~~~s~L~IlDA~~l~~gPVAr~~LP~  313 (335)
                                  +.||+++++++||||||||+++  .+++|||||||++|+|..+++|+|+||||++|++  |||++||+
T Consensus       443 ------------~~~~~g~~~~~~EPvFVPrp~~~~~~~~EDDG~lLs~V~d~~~~~S~LlILDA~~l~~--vArv~LP~  508 (529)
T 3npe_A          443 ------------TKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRL--EATVQLPS  508 (529)
T ss_dssp             ------------EEEECCTTBCCCCCEEEECCSCSSSSCCTTCEEEEEEEEBSSCCCEEEEEEETTTTEE--EEEEEESS
T ss_pred             ------------EEEEcCCCccccCCEeeeCCCCCCCCCCCCCcEEEEEEEECCCCcEEEEEEeCCCCcc--ceEEECCC
Confidence                        4699999999999999999641  0258999999999999999999999999999985  89999999


Q ss_pred             cCCCCccccccChhhHHHhh
Q 019836          314 RVPYGFHGIFLSEEQLEELA  333 (335)
Q Consensus       314 ~iP~GfHG~w~~~~~~~~~~  333 (335)
                      +||+||||+|+++.+|.+|+
T Consensus       509 rvP~GfHG~wv~~~~l~~q~  528 (529)
T 3npe_A          509 RVPFGFHGTFITGQELEAQA  528 (529)
T ss_dssp             CCCCCSCEEEEEHHHHTTCC
T ss_pred             CCCCCccccccCHHHhhhhh
Confidence            99999999999999998875

PyMOL of 3npe

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00