Citrus Sinensis ID: 019840

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
MAYNDQQNMQRLVLPTTSTNPPPPTWLNNAVRHHHHQNNDDDDDDEEEAPKNNKNNSASNDNGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKIGAGNGLAIKANK
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHHccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccEcccccEEEEccc
mayndqqnmqrlvlpttstnpppptwlnnavrhhhhqnnddddddeeeapknnknnsasndngraedwetvkckaeivghPLYEQLLSAHVSCLriatpvdqlpkidaqLSRSRDVLAKYSAVangrvlddkELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLqsltgvspgestgatmsdddedqvdsdtnffdgsldgpdsmgfgplvptesERSLMERVRHELKHELKQGYKEKIVDIREEILRKRragklpgdtTSLLKAWWLshakwpyptvsrtnscIAISLFNSICTLNSYLVLNVVaggrqgkigagnglaikank
MAYNDQQNMQRlvlpttstnpppPTWLNNAVRHHHHQNNDDDDDDEEEAPknnknnsasndngraedWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAvangrvlddkeLDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKhelkqgykekivDIREEILrkrragklpgdtTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGrqgkigagnglaikank
MAYNDQQNMQRLVLpttstnpppptWLNNAVRHHHHQnnddddddeeeapknnknnsasndnGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSdddedqvdsdTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKIGAGNGLAIKANK
*******************************************************************WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQ***********************************************************************GYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKIGAGN********
**************************************************************************AEIVGHPLYEQLLSAHVSCLRIATPVDQLPK******************************QFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACW***********************************FFDGSLD**********************************************************TTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLN**********************
********MQRLVLPTTSTNPPPPTWLNNAVRH*******************************AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKIGAGNGLAIKANK
************V****STNP**P*******************************************WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYS*VANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLT************************************************RSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKIGAGNGLAIKA**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAYNDQQNMQRLVLPTTSTNPPPPTWLNNAVRHHHHQNNDDDDDDEEEAPKNNKNNSASNDNGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKIGAGNGLAIKANK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query335 2.2.26 [Sep-21-2011]
P48000431 Homeobox protein knotted- yes no 0.647 0.503 0.807 1e-104
O22300426 Homeobox protein knotted- N/A no 0.656 0.516 0.850 1e-103
P48001393 Homeobox protein knotted- no no 0.656 0.559 0.787 1e-103
O04136427 Homeobox protein knotted- N/A no 0.659 0.517 0.814 1e-100
Q0J6N4374 Homeobox protein knotted- yes no 0.638 0.572 0.806 5e-99
P48002383 Homeobox protein knotted- no no 0.659 0.577 0.733 2e-94
Q0E3C3313 Homeobox protein knotted- yes no 0.635 0.680 0.744 3e-87
Q94LW4323 Homeobox protein knotted- yes no 0.647 0.671 0.706 4e-85
Q9FPQ8291 Homeobox protein knotted- no no 0.641 0.738 0.634 1e-76
P46606294 Homeobox protein HD1 OS=B N/A no 0.641 0.731 0.636 2e-75
>sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1 Back     alignment and function desciption
 Score =  377 bits (968), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/223 (80%), Positives = 200/223 (89%), Gaps = 6/223 (2%)

Query: 68  WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAV---A 124
           W+  + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S+ V+AKYSA+   A
Sbjct: 154 WQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVAKYSALGAAA 213

Query: 125 NGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGE 184
            G V DDKELDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW++EQSLQSLTGVSPGE
Sbjct: 214 QGLVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGE 273

Query: 185 STGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQG 244
             GATMSDD+++QV+SD N FDG L   D +GFGPL+PTESERSLMERVR ELKHELKQG
Sbjct: 274 GMGATMSDDEDEQVESDANMFDGGL---DVLGFGPLIPTESERSLMERVRQELKHELKQG 330

Query: 245 YKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPT 287
           YKEKIVDIREEILRKRRAGKLPGDTTS+LKAWW SH+KWPYPT
Sbjct: 331 YKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPT 373

Arabidopsis thaliana (taxid: 3702)
>sp|O22300|LET12_SOLLC Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum GN=LET12 PE=2 SV=1 Back     alignment and function description
>sp|P48001|KNAT4_ARATH Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=2 SV=3 Back     alignment and function description
>sp|O04136|KNAP3_MALDO Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|Q0J6N4|KNOSD_ORYSJ Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica GN=OSH45 PE=2 SV=2 Back     alignment and function description
>sp|P48002|KNAT5_ARATH Homeobox protein knotted-1-like 5 OS=Arabidopsis thaliana GN=KNAT5 PE=1 SV=2 Back     alignment and function description
>sp|Q0E3C3|KNOS2_ORYSJ Homeobox protein knotted-1-like 2 OS=Oryza sativa subsp. japonica GN=HOS58 PE=2 SV=2 Back     alignment and function description
>sp|Q94LW4|KNOSB_ORYSJ Homeobox protein knotted-1-like 11 OS=Oryza sativa subsp. japonica GN=HOS59 PE=2 SV=2 Back     alignment and function description
>sp|Q9FPQ8|KNAT7_ARATH Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=2 SV=1 Back     alignment and function description
>sp|P46606|HD1_BRANA Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query335
296084578413 unnamed protein product [Vitis vinifera] 0.785 0.636 0.699 1e-109
356562896344 PREDICTED: homeobox protein knotted-1-li 0.761 0.741 0.736 1e-109
356548471345 PREDICTED: homeobox protein knotted-1-li 0.764 0.742 0.736 1e-109
225463014430 PREDICTED: homeobox protein knotted-1-li 0.737 0.574 0.770 1e-109
329757149368 knotted-like homeobox KNOX5 [Fragaria ve 0.737 0.671 0.760 1e-108
356507510411 PREDICTED: homeobox protein knotted-1-li 0.659 0.537 0.823 1e-108
356515190400 PREDICTED: homeobox protein knotted-1-li 0.659 0.552 0.823 1e-107
359475858415 PREDICTED: homeobox protein knotted-1-li 0.665 0.537 0.814 1e-107
224142451279 predicted protein [Populus trichocarpa] 0.707 0.849 0.765 1e-106
356563910405 PREDICTED: homeobox protein knotted-1-li 0.770 0.637 0.733 1e-106
>gi|296084578|emb|CBI25599.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/296 (69%), Positives = 226/296 (76%), Gaps = 33/296 (11%)

Query: 24  PTWLNNAVRHH----------HHQNNDDDDDDEEEAPK----------NNKNNSASNDN- 62
           PTWLNNA+             H Q N D       A            +NK N  +N N 
Sbjct: 62  PTWLNNAILRQQSQYADGSFLHLQTNSDSTSSPATATTTTNQWLSRSMSNKRNGGNNQNR 121

Query: 63  --GRAED---------WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLS 111
                ED         WE  + KA+I+ HPLYEQLLSAHVSCLRIATPVDQLP+IDAQL+
Sbjct: 122 GDNNGEDMLDCDSGGNWENARYKADILAHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLA 181

Query: 112 RSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLE 171
           +S+ V+ KYS +AN + LDDKELDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW+LE
Sbjct: 182 QSQGVVTKYSVLAN-QPLDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELE 240

Query: 172 QSLQSLTGVSPGESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLME 231
           QSLQSLTGVSPGE TGATMSDD++DQ DS+ N FDGSLDGPDSMGFGPLVPTE+ERSLME
Sbjct: 241 QSLQSLTGVSPGEGTGATMSDDEDDQADSEINLFDGSLDGPDSMGFGPLVPTETERSLME 300

Query: 232 RVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPT 287
           RVR ELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWW SH+KWPYPT
Sbjct: 301 RVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPT 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356562896|ref|XP_003549704.1| PREDICTED: homeobox protein knotted-1-like 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356548471|ref|XP_003542625.1| PREDICTED: homeobox protein knotted-1-like 3-like [Glycine max] Back     alignment and taxonomy information
>gi|225463014|ref|XP_002265494.1| PREDICTED: homeobox protein knotted-1-like 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|329757149|gb|AEC04754.1| knotted-like homeobox KNOX5 [Fragaria vesca] Back     alignment and taxonomy information
>gi|356507510|ref|XP_003522507.1| PREDICTED: homeobox protein knotted-1-like 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356515190|ref|XP_003526284.1| PREDICTED: homeobox protein knotted-1-like 3-like [Glycine max] Back     alignment and taxonomy information
>gi|359475858|ref|XP_002285407.2| PREDICTED: homeobox protein knotted-1-like 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224142451|ref|XP_002324571.1| predicted protein [Populus trichocarpa] gi|222866005|gb|EEF03136.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356563910|ref|XP_003550200.1| PREDICTED: homeobox protein knotted-1-like 3-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query335
TAIR|locus:2184911393 KNAT4 "KNOTTED1-like homeobox 0.656 0.559 0.769 3.6e-89
TAIR|locus:2146945431 KNAT3 "KNOTTED1-like homeobox 0.647 0.503 0.780 3.6e-89
TAIR|locus:2116632383 KNAT5 "KNOTTED1-like homeobox 0.656 0.574 0.709 3.6e-82
TAIR|locus:2015554291 KNAT7 "KNOTTED-like homeobox o 0.635 0.731 0.622 4e-67
TAIR|locus:2128828398 KNAT1 "KNOTTED-like from Arabi 0.259 0.218 0.365 9.4e-15
TAIR|locus:2027089382 STM "SHOOT MERISTEMLESS" [Arab 0.322 0.282 0.289 1.9e-14
TAIR|locus:2026810310 KNAT2 "KNOTTED-like from Arabi 0.155 0.167 0.384 2.3e-11
UNIPROTKB|P46609361 OSH1 "Homeobox protein knotted 0.232 0.216 0.341 1.2e-06
TAIR|locus:2184911 KNAT4 "KNOTTED1-like homeobox gene 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 174/226 (76%), Positives = 193/226 (85%)

Query:    65 AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAV- 123
             AE W+  + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S++V+AKYS + 
Sbjct:   115 AERWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTLE 174

Query:   124 -ANGRVL-DDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVS 181
              A G +  DDKELD FMTHYVLLL SFKEQLQQHVRVHAMEAVMACW++EQSLQS TGVS
Sbjct:   175 AAQGLLAGDDKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFTGVS 234

Query:   182 PGESTGATMSXXXXXXXXXXTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHEL 241
             PGE TGATMS           + FDGSLDG   +GFGPLVPTESERSLMERVR ELKHEL
Sbjct:   235 PGEGTGATMSEDEDEQVESDAHLFDGSLDG---LGFGPLVPTESERSLMERVRQELKHEL 291

Query:   242 KQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPT 287
             KQGYKEKIVDIREEILRKRRAGKLPGDTTS+LK+WW SH+KWPYPT
Sbjct:   292 KQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPT 337
GO:0003677 "DNA binding" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IEA;IDA;NAS
GO:0005737 "cytoplasm" evidence=NAS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0048513 "organ development" evidence=RCA
GO:0009416 "response to light stimulus" evidence=IEP
TAIR|locus:2146945 KNAT3 "KNOTTED1-like homeobox gene 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116632 KNAT5 "KNOTTED1-like homeobox gene 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015554 KNAT7 "KNOTTED-like homeobox of Arabidopsis thaliana 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128828 KNAT1 "KNOTTED-like from Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027089 STM "SHOOT MERISTEMLESS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026810 KNAT2 "KNOTTED-like from Arabidopsis thaliana 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P46609 OSH1 "Homeobox protein knotted-1-like 6" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0J6N4KNOSD_ORYSJNo assigned EC number0.80640.63880.5721yesno
Q94LW4KNOSB_ORYSJNo assigned EC number0.70660.64770.6718yesno
Q0E3C3KNOS2_ORYSJNo assigned EC number0.74410.63580.6805yesno
P48000KNAT3_ARATHNo assigned EC number0.80710.64770.5034yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
pfam0379152 pfam03791, KNOX2, KNOX2 domain 2e-18
pfam0379045 pfam03790, KNOX1, KNOX1 domain 2e-14
pfam0378922 pfam03789, ELK, ELK domain 6e-05
>gnl|CDD|112597 pfam03791, KNOX2, KNOX2 domain Back     alignment and domain information 
 Score = 77.3 bits (191), Expect = 2e-18
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 126 GRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
             +  D ELDQFM  Y  +L  +KE+L +       EA+    ++E  LQ+L G
Sbjct: 3   RCIGADPELDQFMEAYCDVLVKYKEELSRPFD----EAMTFLNEIETQLQNLCG 52

The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerisation. Length = 52
>gnl|CDD|112596 pfam03790, KNOX1, KNOX1 domain Back     alignment and domain information
>gnl|CDD|217729 pfam03789, ELK, ELK domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 335
KOG0773342 consensus Transcription factor MEIS1 and related H 99.97
PF0379152 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEIN 99.91
KOG0774334 consensus Transcription factor PBX and related HOX 99.9
PF0379045 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEIN 99.84
PF0592040 Homeobox_KN: Homeobox KN domain; InterPro: IPR0084 99.69
KOG0775304 consensus Transcription factor SIX and related HOX 99.36
cd0008659 homeodomain Homeodomain; DNA binding domains invol 99.24
smart0038956 HOX Homeodomain. DNA-binding factors that are invo 99.21
PF0004657 Homeobox: Homeobox domain not present here.; Inter 98.96
PF0378922 ELK: ELK domain ; InterPro: IPR005539 This domain 98.08
KOG0773 342 consensus Transcription factor MEIS1 and related H 97.94
TIGR0156558 homeo_ZF_HD homeobox domain, ZF-HD class. This mod 97.65
PF03792191 PBC: PBC domain; InterPro: IPR005542 Pbx proteins 96.82
KOG2252558 consensus CCAAT displacement protein and related h 96.7
COG5576156 Homeodomain-containing transcription factor [Trans 96.34
PF1156956 Homez: Homeodomain leucine-zipper encoding, Homez; 95.8
KOG0483198 consensus Transcription factor HEX, contains HOX a 95.31
KOG0493342 consensus Transcription factor Engrailed, contains 95.24
KOG3802398 consensus Transcription factor OCT-1, contains POU 94.95
KOG0842307 consensus Transcription factor tinman/NKX2-3, cont 94.86
KOG0485268 consensus Transcription factor NKX-5.1/HMX1, conta 94.02
KOG0843197 consensus Transcription factor EMX1 and related HO 93.82
KOG0486 351 consensus Transcription factor PTX1, contains HOX 93.57
KOG0487308 consensus Transcription factor Abd-B, contains HOX 92.91
KOG0492246 consensus Transcription factor MSH, contains HOX d 92.45
KOG0850245 consensus Transcription factor DLX and related pro 92.23
KOG2251 228 consensus Homeobox transcription factor [Transcrip 92.21
KOG0488309 consensus Transcription factor BarH and related HO 90.68
KOG0490 235 consensus Transcription factor, contains HOX domai 90.03
KOG4577 383 consensus Transcription factor LIM3, contains LIM 87.59
KOG1168385 consensus Transcription factor ACJ6/BRN-3, contain 86.78
KOG0849 354 consensus Transcription factor PRD and related pro 86.64
KOG0491194 consensus Transcription factor BSH, contains HOX d 86.32
KOG0489261 consensus Transcription factor zerknullt and relat 85.93
KOG0494 332 consensus Transcription factor CHX10 and related H 82.65
KOG0848317 consensus Transcription factor Caudal, contains HO 82.62
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information 
Probab=99.97  E-value=1.4e-32  Score=263.82  Aligned_cols=246  Identities=19%  Similarity=0.176  Sum_probs=177.5

Q ss_pred             hhhhhHHHHHHHhcCCChHHHHHHHHhchhccCCCCchhhHHHHHhhhhhHHhhhhhccC-----CCcCCChhHHHHHHH
Q 019840           66 EDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVAN-----GRVLDDKELDQFMTH  140 (335)
Q Consensus        66 ~~~e~~~iKAkI~sHPlYp~LL~AyidC~KVGAPpevv~rld~~l~~~~~~~~k~~~~~~-----~~~~~DPELDqFMea  140 (335)
                      ..+.....|+.+.+||+|..++.||++|.+++.|.+.+.+++............+...+.     ...+.+++|+.||..
T Consensus        45 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~s~~~~~~~~~~~~~~~~~k  124 (342)
T KOG0773|consen   45 IMVSLASSKYLTAAQELLDEFCSAGLDCLKGKMPYDPVPRSPASLSPPEDKGARRGNATRESATLKAWLEEHRLNPYPSK  124 (342)
T ss_pred             cccccccccccccchhHHhHHhhccccccccccCcCccccccccccCccccccccccccccccccccchhhhhhccCchH
Confidence            455667899999999999999999999999999999998877655433222222221111     136789999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCchhhccC---CCCCccCCCCCCCCCCCC
Q 019840          141 YVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVD---SDTNFFDGSLDGPDSMGF  217 (335)
Q Consensus       141 Yc~~L~kykeEL~kP~~~~~~EA~~F~~~iE~QL~~L~~~s~~e~t~~~~Sdde~~~~~---s~~~~~~g~~~~~d~~~~  217 (335)
                      |+.+|..+...|+..+.  -++++.++++|+..+...++..+......+...+.++.+.   +.....+      +.+++
T Consensus       125 ~~~~ll~~~~~~~~~~~--~~~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~------~~~~~  196 (342)
T KOG0773|consen  125 LEKILLAVITKLTLTQV--STWFANARRRLKKELKMTWGPTPLALDGISRHFSDLEKEKAIGGQLSSSE------ELLGE  196 (342)
T ss_pred             HHHHHHHHHHHhhhhhH--HHHHHHHHHHHHhccCCCCCCccccccchhhhhhhhhhcccccccccccc------ccccc
Confidence            99999999999999863  3899999999999999988765544333322222211100   0000000      11111


Q ss_pred             CCCCCCchhhhhH--HHhhHHHHHHHHhhhhhhhhhHHHHHHhhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHH
Q 019840          218 GPLVPTESERSLM--ERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCI  295 (335)
Q Consensus       218 g~~~p~~~ers~~--~~~d~ELk~~L~~ky~~~l~~l~~e~~kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La  295 (335)
                      ++....+.+.+.+  .+.+..++..+.+.+..+++....+..++|+++.||++++.+|+.||++|+.||||++.+|..|+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La  276 (342)
T KOG0773|consen  197 SEQDDSEDESGPSGSEPPLRLAKQSLRQQRSAYDGSGGKKQSKWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLA  276 (342)
T ss_pred             ccccccccccCcccccCCcccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccc
Confidence            1111111111111  23456777788888877777777778888999999999999999999999999999999999999


Q ss_pred             HHhCcccccccccccccccccccccccccC
Q 019840          296 AISLFNSICTLNSYLVLNVVAGGRQGKIGA  325 (335)
Q Consensus       296 ~~TgLt~~~~L~~~QV~NWF~NaRrR~~~~  325 (335)
                      .+|||++      .||+|||||+|+|.+.-
T Consensus       277 ~~TGLs~------~Qv~NWFINaR~R~w~p  300 (342)
T KOG0773|consen  277 KQTGLSR------PQVSNWFINARVRLWKP  300 (342)
T ss_pred             hhcCCCc------ccCCchhhhcccccCCc
Confidence            9999885      59999999999999853

>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2 Back     alignment and domain information
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription] Back     alignment and domain information
>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2 Back     alignment and domain information
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [] Back     alignment and domain information
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription] Back     alignment and domain information
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>smart00389 HOX Homeodomain Back     alignment and domain information
>PF00046 Homeobox: Homeobox domain not present here Back     alignment and domain information
>PF03789 ELK: ELK domain ; InterPro: IPR005539 This domain is required for the nuclear localisation of these proteins [] Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class Back     alignment and domain information
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins Back     alignment and domain information
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription] Back     alignment and domain information
>COG5576 Homeodomain-containing transcription factor [Transcription] Back     alignment and domain information
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A Back     alignment and domain information
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription] Back     alignment and domain information
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription] Back     alignment and domain information
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0485 consensus Transcription factor NKX-5 Back     alignment and domain information
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription] Back     alignment and domain information
>KOG2251 consensus Homeobox transcription factor [Transcription] Back     alignment and domain information
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription] Back     alignment and domain information
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription] Back     alignment and domain information
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription] Back     alignment and domain information
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 8e-09
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 2e-08
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 2e-08
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 3e-08
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 7e-08
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 8e-08
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 2e-07
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 7e-07
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 1e-06
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 1e-05
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 73 Back     alignment and structure
 Score = 50.9 bits (122), Expect = 8e-09
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPT 287
            K + G LP   T+++++W   H   PYPT
Sbjct: 7   GKNKRGVLPKHATNVMRSWLFQHIGHPYPT 36
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Length = 83 Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Length = 73 Back     alignment and structure
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64 Back     alignment and structure
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Length = 87 Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} Length = 67 Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Length = 87 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Length = 83 Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Length = 60 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query335
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 99.67
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 99.64
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 99.6
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 99.54
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 99.53
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 99.49
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 99.49
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 99.47
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 99.47
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 99.47
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 99.18
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 99.17
2da4_A80 Hypothetical protein DKFZP686K21156; homeobox doma 99.01
1bw5_A66 ISL-1HD, insulin gene enhancer protein ISL-1; DNA- 98.96
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 98.95
2dmu_A70 Homeobox protein goosecoid; homeobox domain, three 98.9
2hdd_A61 Protein (engrailed homeodomain Q50K); DNA binding, 98.89
2e1o_A70 Homeobox protein PRH; DNA binding protein, structu 98.89
1wh5_A80 ZF-HD homeobox family protein; structural genomics 98.88
2da3_A80 Alpha-fetoprotein enhancer binding protein; homeob 98.87
1jgg_A60 Segmentation protein EVEN-skipped; homeodomain, pr 98.86
2da1_A70 Alpha-fetoprotein enhancer binding protein; homeob 98.86
1fjl_A81 Paired protein; DNA-binding protein, paired BOX, t 98.86
2da2_A70 Alpha-fetoprotein enhancer binding protein; homeob 98.85
3rkq_A58 Homeobox protein NKX-2.5; helix-turn-helix, DNA bi 98.85
1ig7_A58 Homeotic protein MSX-1; helix-turn-helix, transcri 98.85
2dmq_A80 LIM/homeobox protein LHX9; homeobox domain, three 98.84
2k40_A67 Homeobox expressed in ES cells 1; thermostable hom 98.84
2djn_A70 Homeobox protein DLX-5; structural genomics, NPPSF 98.83
2h1k_A63 IPF-1, pancreatic and duodenal homeobox 1, homeodo 98.83
2cra_A70 Homeobox protein HOX-B13; DNA-binding, transcripti 98.81
2vi6_A62 Homeobox protein nanog; homeodomain, DNA-binding, 98.78
2l7z_A73 Homeobox protein HOX-A13; gene regulation; NMR {Ho 98.77
1ftt_A68 TTF-1 HD, thyroid transcription factor 1 homeodoma 98.76
2dms_A80 Homeobox protein OTX2; homeobox domain, three heli 98.75
1ahd_P68 Antennapedia protein mutant; DNA binding protein/D 98.75
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 98.75
3d1n_I151 POU domain, class 6, transcription factor 1; prote 98.74
2dmt_A80 Homeobox protein BARH-like 1; homeobox domain, thr 98.74
1yz8_P68 Pituitary homeobox 2; DNA binding protein, transcr 98.74
3a02_A60 Homeobox protein aristaless; homeodomain, developm 98.73
1nk2_P77 Homeobox protein VND; homeodomain, DNA-binding pro 98.72
1zq3_P68 PRD-4, homeotic bicoid protein; protein-DNA comple 98.7
2cuf_A95 FLJ21616 protein; homeobox domain, hepatocyte tran 98.68
2cue_A80 Paired box protein PAX6; homeobox domain, transcri 98.68
2m0c_A75 Homeobox protein aristaless-like 4; structural gen 98.66
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 98.65
1uhs_A72 HOP, homeodomain only protein; structural genomics 98.65
2kt0_A84 Nanog, homeobox protein nanog; homeodomain, struct 98.64
1puf_A77 HOX-1.7, homeobox protein HOX-A9; homeodomian, pro 98.64
1b8i_A81 Ultrabithorax, protein (ultrabithorax homeotic pro 98.63
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 98.62
3a01_A93 Homeodomain-containing protein; homeodomain, prote 98.62
2hi3_A73 Homeodomain-only protein; transcription; NMR {Mus 98.62
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 98.61
3a03_A56 T-cell leukemia homeobox protein 2; homeodomain, d 98.59
2ly9_A74 Zinc fingers and homeoboxes protein 1; structural 98.58
1wh7_A80 ZF-HD homeobox family protein; homeobox domain, st 98.58
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 98.57
2r5y_A88 Homeotic protein sex combs reduced; homeodomain; H 98.53
1mh3_A421 Maltose binding-A1 homeodomain protein chimera; MA 98.53
2e19_A64 Transcription factor 8; homeobox domain, structura 98.53
1b72_A97 Protein (homeobox protein HOX-B1); homeodomain, DN 98.52
2xsd_C164 POU domain, class 3, transcription factor 1; trans 98.48
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 98.48
2h8r_A221 Hepatocyte nuclear factor 1-beta; trasncription fa 98.45
1e3o_C160 Octamer-binding transcription factor 1; transcript 98.44
1au7_A146 Protein PIT-1, GHF-1; complex (DNA-binding protein 98.43
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 98.35
1lfb_A99 Liver transcription factor (LFB1); transcription r 98.31
2da6_A102 Hepatocyte nuclear factor 1-beta; homeobox domain, 98.3
3l1p_A155 POU domain, class 5, transcription factor 1; POU, 98.26
2l9r_A69 Homeobox protein NKX-3.1; structural genomics, nor 98.16
1ic8_A194 Hepatocyte nuclear factor 1-alpha; transcription r 98.13
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 98.11
2da7_A71 Zinc finger homeobox protein 1B; homeobox domain, 97.84
1x2m_A64 LAG1 longevity assurance homolog 6; homeobox domai 97.84
2ys9_A70 Homeobox and leucine zipper protein homez; homeodo 89.59
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Back     alignment and structure
Probab=99.67  E-value=8.1e-18  Score=135.78  Aligned_cols=55  Identities=18%  Similarity=0.332  Sum_probs=50.8

Q ss_pred             CCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccccc
Q 019840          263 GKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKI  323 (335)
Q Consensus       263 gkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~  323 (335)
                      --||++++++|++||.+|..+||||++||..||.+|||+      ..||+|||+|+|+|..
T Consensus        10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt------~~QV~~WF~NrR~R~k   64 (89)
T 2lk2_A           10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLS------TLQVCNWFINARRRLL   64 (89)
T ss_dssp             CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSC------HHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcC------HHHHHHHHHHHHHHhh
Confidence            359999999999999999999999999999999999987      4699999999998764
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Back     alignment and structure
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Back     alignment and structure
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Back     alignment and structure
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Back     alignment and structure
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Back     alignment and structure
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Back     alignment and structure
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Back     alignment and structure
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Back     alignment and structure
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Back     alignment and structure
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* Back     alignment and structure
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Back     alignment and structure
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Back     alignment and structure
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Back     alignment and structure
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Back     alignment and structure
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A Back     alignment and structure
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Back     alignment and structure
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Back     alignment and structure
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Back     alignment and structure
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Back     alignment and structure
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* Back     alignment and structure
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A Back     alignment and structure
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Back     alignment and structure
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Back     alignment and structure
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A Back     alignment and structure
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Back     alignment and structure
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 335
d1x2na162 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H 7e-06
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (96), Expect = 7e-06
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSR 290
           K + G LP   T+++++W   H   PYPT   
Sbjct: 3   KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDE 34

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query335
d1x2na162 Homeobox protein pknox1 {Human (Homo sapiens) [Tax 99.77
d1pufb_73 pbx1 {Human (Homo sapiens) [TaxId: 9606]} 99.67
d1k61a_60 mat alpha2 Homeodomain {Baker's yeast (Saccharomyc 99.66
d1wi3a_71 DNA-binding protein SATB2 {Human (Homo sapiens) [T 99.15
d1le8a_53 Mating type protein A1 Homeodomain {Baker's yeast 99.11
d2ecca176 Homeobox-leucine zipper protein Homez {Human (Homo 99.08
d1ocpa_67 Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId 99.05
d1au7a158 Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta 99.03
d1bw5a_66 Insulin gene enhancer protein isl-1 {Rat (Rattus n 99.02
d1e3oc157 Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId 98.95
d1fjla_65 Paired protein {Fruit fly (Drosophila melanogaster 98.95
d2ecba176 Zinc fingers and homeoboxes protein 1, ZHX1 {Human 98.94
d1yz8p160 Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 98.89
d1wh7a_80 ZF-HD homeobox protein At4g24660 {Thale cress (Ara 98.89
d1ftta_68 Thyroid transcription factor 1 homeodomain {Rat (R 98.88
d1s7ea150 Hepatocyte nuclear factor 6 {Mouse (Mus musculus) 98.87
d2e1oa157 Homeobox protein prh {Human (Homo sapiens) [TaxId: 98.86
d2cqxa159 LAG1 longevity assurance homolog 5, LASS5 {Mouse ( 98.83
d1x2ma152 Lag1 longevity assurance homolog 6, LASS6 {Mouse ( 98.83
d1p7ia_53 Engrailed Homeodomain {Drosophila melanogaster [Ta 98.81
d1pufa_77 Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax 98.8
d1vnda_77 VND/NK-2 protein {Fruit fly (Drosophila melanogast 98.8
d2craa158 Homeobox protein hox-b13 {Human (Homo sapiens) [Ta 98.78
d1ig7a_58 Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 98.76
d2cufa182 Homeobox-containing protein 1, HMBOX1 (Flj21616) { 98.75
d1zq3p167 Homeotic bicoid protein {Fruit fly (Drosophila mel 98.72
d1b72a_88 Homeobox protein hox-b1 {Human (Homo sapiens) [Tax 98.69
d1lfba_78 Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat 98.66
d1jgga_57 Even-skipped homeodomain {Fruit fly (Drosophila me 98.63
d2cuea168 Paired box protein pax6 {Human (Homo sapiens) [Tax 98.62
d9anta_56 Antennapedia Homeodomain {Drosophila melanogaster 98.54
d1uhsa_72 Homeodomain-only protein, Hop {Mouse (Mus musculus 98.38
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.7e-20  Score=138.57  Aligned_cols=60  Identities=25%  Similarity=0.451  Sum_probs=55.3

Q ss_pred             hhccCCCCcchHHHHHHHHHHhccCCCCCCHHHHHHHHHHhCcccccccccccccccccccccccc
Q 019840          258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTVSRTNSCIAISLFNSICTLNSYLVLNVVAGGRQGKI  323 (335)
Q Consensus       258 kkrKkgkLPKea~~iLk~W~~~H~~~PYPSE~EK~~La~~TgLt~~~~L~~~QV~NWF~NaRrR~~  323 (335)
                      .||||++||++++.+|++||..|..+||||.+||.+||.+|||+      ..||.|||.|+|+|.+
T Consensus         2 ~krkR~~~~~~~~~iL~~wf~~~~~nPyPs~~e~~~La~~~~l~------~~qI~~WF~N~R~R~l   61 (62)
T d1x2na1           2 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLT------LLQVNNWFINARRRIL   61 (62)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCC------HHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcC------HHHhHHHHHHHHHHhc
Confidence            36788999999999999999999999999999999999999887      5799999999998754
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure