Citrus Sinensis ID: 019931
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 334 | 2.2.26 [Sep-21-2011] | |||||||
| A3DBD5 | 388 | Putative 8-amino-7-oxonon | yes | no | 0.718 | 0.618 | 0.381 | 2e-41 | |
| A9BGL0 | 393 | 8-amino-7-oxononanoate sy | yes | no | 0.622 | 0.529 | 0.407 | 4e-41 | |
| P22806 | 389 | 8-amino-7-oxononanoate sy | yes | no | 0.655 | 0.562 | 0.386 | 4e-40 | |
| B7ID58 | 391 | 8-amino-7-oxononanoate sy | yes | no | 0.622 | 0.531 | 0.398 | 1e-39 | |
| B0K590 | 395 | 8-amino-7-oxononanoate sy | yes | no | 0.622 | 0.526 | 0.413 | 1e-39 | |
| Q1DCV8 | 391 | 8-amino-7-oxononanoate sy | yes | no | 0.715 | 0.611 | 0.368 | 2e-39 | |
| A6LMP4 | 391 | 8-amino-7-oxononanoate sy | yes | no | 0.622 | 0.531 | 0.402 | 2e-39 | |
| B0KC20 | 395 | 8-amino-7-oxononanoate sy | yes | no | 0.622 | 0.526 | 0.413 | 2e-39 | |
| A6TU88 | 395 | 8-amino-7-oxononanoate sy | yes | no | 0.616 | 0.521 | 0.395 | 4e-39 | |
| B1YMC6 | 390 | 8-amino-7-oxononanoate sy | yes | no | 0.619 | 0.530 | 0.408 | 3e-38 |
| >sp|A3DBD5|BIOF_CLOTH Putative 8-amino-7-oxononanoate synthase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=bioF PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 145/265 (54%), Gaps = 25/265 (9%)
Query: 74 FQRWLHDVPSSGDENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAKAAA 133
FQ L D+ + G E + T+ R ++L+ S N+YLGL + +AA
Sbjct: 4 FQGALKDIKNKGLYREFRNVNAAQGPYTVIDGR---KMLMMSSNNYLGLCDDIRLKRAAI 60
Query: 134 ----RHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIA 189
+ G+G GS L CG HR LE LA K E C++ +G+AAN+ I +
Sbjct: 61 ESIRKFGVGAGGSRLTCGNFELHRELEERLAKFKDVESCIVFGSGYAANIGAISGIA--- 117
Query: 190 SLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCC 249
D+ IF D LNHASI+DGIR++ ++ VYKHCDM L++ +
Sbjct: 118 -----------DKNWVIFCDRLNHASIVDGIRLSG----AKLVVYKHCDMEDLESKIVRY 162
Query: 250 TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC 309
K ++VTD +FSMDGD AP+ +VKL +KY + ++DDAH T + G+ G G +E F
Sbjct: 163 HTGKSLIVTDGVFSMDGDVAPVDRIVKLAKKYNLMTMVDDAHATGILGEKGRGTSEYFGL 222
Query: 310 ERDVDICVGTLSKAAGCQGGFIACR 334
+ VDI +GTLSKA G +GGF+A +
Sbjct: 223 KDAVDISMGTLSKAFGVEGGFVAGK 247
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Catalyzes the decarboxylative condensation of pimeloyl-CoA and L-alanine to produce 8-amino-7-oxononanoate (AON), coenzyme A, and carbon dioxide. Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (taxid: 203119) EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 4EC: 7 |
| >sp|A9BGL0|BIOF_PETMO 8-amino-7-oxononanoate synthase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=Pmob_1549 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/233 (40%), Positives = 138/233 (59%), Gaps = 25/233 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAARH----GMGPRGSALICGYTNYHRLLESCLADLKK 164
K++L N+YLGL+++ + +AA G+GP I G H LE LA+ KK
Sbjct: 39 KKVLNMCSNNYLGLANNERLKEAAINAIKNWGVGPGAVRTIAGTMKIHEELEKKLAEFKK 98
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
E L+ +GF AN AVI + N E+ I SD LNHASIIDG+R+++
Sbjct: 99 VEATLVVQSGFNANQAVIPTITN--------------EEDGILSDELNHASIIDGVRLSK 144
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTM---RKKVVVTDSLFSMDGDFAPMVELVKLRRKY 281
+ +++KH D++ L+ L R+K+++TD +FSMDGD AP+ +V+L +KY
Sbjct: 145 AKR----YIWKHKDLNSLEEQLVKAQRDNCRRKLIITDGVFSMDGDIAPLPGIVELAKKY 200
Query: 282 GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334
L+++DDAHG V G+NG G+A+ FN +VDI +GTLSKA G GGFIA +
Sbjct: 201 DALVMVDDAHGEGVLGENGRGIADHFNLTEEVDIEIGTLSKAFGVVGGFIAGK 253
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Catalyzes the decarboxylative condensation of pimeloyl-CoA and L-alanine to produce 8-amino-7-oxononanoate (AON), coenzyme A and/or converts 2-amino-3-ketobutyrate to glycine and acetyl-CoA. Petrotoga mobilis (strain DSM 10674 / SJ95) (taxid: 403833) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|P22806|BIOF_LYSSH 8-amino-7-oxononanoate synthase OS=Lysinibacillus sphaericus GN=bioF PE=1 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (418), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 146/256 (57%), Gaps = 37/256 (14%)
Query: 83 SSGDENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAKAA----ARHGMG 138
S+G+E+E++ K+ LLFS N+YLGL++ + K A +++G G
Sbjct: 25 STGNESEVVMNG--------------KKFLLFSSNNYLGLATDSRLKKKATEGISKYGTG 70
Query: 139 PRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKS 198
GS L G + H LES +AD KK E ++ +G+ AN+ VI +V + AGD
Sbjct: 71 AGGSRLTTGNFDIHEQLESEIADFKKTEAAIVFSSGYLANVGVISSV-----MKAGD--- 122
Query: 199 FKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHL-KTLLSCCTMRKKVVV 257
IFSDA NHASIIDG R+++ + VY+H DM L + L K +V
Sbjct: 123 ------TIFSDAWNHASIIDGCRLSK----AKTIVYEHADMVDLERKLRQSHGDGLKFIV 172
Query: 258 TDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICV 317
TD +FSMDGD AP+ ++V+L ++Y +++DDAH T V G +G G A+ F + ++D V
Sbjct: 173 TDGVFSMDGDIAPLPKIVELAKEYKAYIMIDDAHATGVLGNDGCGTADYFGLKDEIDFTV 232
Query: 318 GTLSKAAGCQGGFIAC 333
GTLSKA G +GGF++
Sbjct: 233 GTLSKAIGAEGGFVST 248
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Catalyzes the decarboxylative condensation of pimeloyl-CoA and L-alanine to produce 8-amino-7-oxononanoate (AON), coenzyme A, and carbon dioxide. Lysinibacillus sphaericus (taxid: 1421) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|B7ID58|BIOF_THEAB 8-amino-7-oxononanoate synthase OS=Thermosipho africanus (strain TCF52B) GN=THA_1494 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 134/231 (58%), Gaps = 23/231 (9%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K++L N+YLG ++ + KAA + G+GP I G + H LE LA+ KK
Sbjct: 39 KKVLNLCSNNYLGFANEERLKKAAIEAIEKWGVGPGAVRTIAGTFSLHNELEKTLAEFKK 98
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
E + +GF AN AVI A+ N E+ AI SD LNHASIIDG+R+++
Sbjct: 99 VEATIFLQSGFVANQAVIPAITN--------------EEDAILSDELNHASIIDGVRLSK 144
Query: 225 RTKMVEVFVYKHCDMSHLK-TLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
+ +V+KH D+ L+ L R+K+++TD +FSMDGD AP+ E+V+L KY
Sbjct: 145 AKR----YVWKHRDVKDLEEKLKEAKDARRKLIITDGVFSMDGDLAPLPEIVELAEKYNA 200
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334
++++DDAHG V G +G G+ + F VDI +GTLSKA G GG++A +
Sbjct: 201 MVMVDDAHGEGVLGSHGRGIVDHFGLHGRVDIEIGTLSKAFGVLGGYVAGK 251
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Catalyzes the decarboxylative condensation of pimeloyl-CoA and L-alanine to produce 8-amino-7-oxononanoate (AON), coenzyme A and/or converts 2-amino-3-ketobutyrate to glycine and acetyl-CoA. Thermosipho africanus (strain TCF52B) (taxid: 484019) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|B0K590|BIOF_THEPX 8-amino-7-oxononanoate synthase OS=Thermoanaerobacter sp. (strain X514) GN=Teth514_0779 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 133/232 (57%), Gaps = 24/232 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K+++ S N+YLGL++HP + KAA + G+G I G H LE LA+ K+
Sbjct: 42 KKVINLSSNNYLGLANHPRLKKAAIEAIEKWGVGAGAVRTIIGNMTIHEELERKLAEFKR 101
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
+E L +GF ANM VI AV + GD I SD LNHASIIDG R++
Sbjct: 102 EEAVLTFQSGFTANMGVIQAVVD-----KGD---------VIISDELNHASIIDGCRLSR 147
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCT--MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYG 282
+V +YKH DM L+ +L R K+++TD +FSMDGD A + E+VKL KY
Sbjct: 148 ----ADVVIYKHSDMEDLERVLKEVKDKYRVKMIITDGVFSMDGDIAKLPEIVKLAEKYS 203
Query: 283 FLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334
+ +DDAH + V G++G G A+ FN +DI +GTLSKA G GG++A +
Sbjct: 204 AITYVDDAHASGVLGESGRGSADHFNLHGRIDIQIGTLSKAIGVVGGYVAGK 255
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Catalyzes the decarboxylative condensation of pimeloyl-CoA and L-alanine to produce 8-amino-7-oxononanoate (AON), coenzyme A and/or converts 2-amino-3-ketobutyrate to glycine and acetyl-CoA. Thermoanaerobacter sp. (strain X514) (taxid: 399726) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|Q1DCV8|BIOF_MYXXD 8-amino-7-oxononanoate synthase OS=Myxococcus xanthus (strain DK 1622) GN=bioF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/277 (36%), Positives = 150/277 (54%), Gaps = 38/277 (13%)
Query: 60 WDRNAVQISISDSTFQRWLHDVPSSGDENEIICGDGLANDKTITFARQFKRLLLFSGNDY 119
W R ++ ++S+ +R+L + S + G+ L N FS NDY
Sbjct: 10 WAREDLE-ALSERGLRRYLEPLDSPQGPVVRVGGETLVN---------------FSSNDY 53
Query: 120 LGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGF 175
LGL++ PT+ AA R+G+G S L+ G T H LE+ LA ++ E L +G+
Sbjct: 54 LGLAASPTVRAAALAAVERYGVGTGASRLVVGDTAAHHRLETRLAAFERAEAVRLFNSGY 113
Query: 176 AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYK 235
AAN +I A L G E A+FSDALNHAS++DG R++ V VY
Sbjct: 114 AANTGIIPA-------LVGSED-------AVFSDALNHASLVDGCRLSR----ARVCVYP 155
Query: 236 HCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFV 295
H D+ L L+ R+K+VVTD++FSMDGD AP+ ++V R +G L++D+AH T V
Sbjct: 156 HADVEALTRALAETPARRKLVVTDTVFSMDGDVAPLRDIVAACRAHGAALMVDEAHATGV 215
Query: 296 CGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
G G G+ ++ E +VD+ +GTLSKA G G ++A
Sbjct: 216 LGARGAGLCDELGLESEVDLRMGTLSKALGVMGAYVA 252
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Catalyzes the decarboxylative condensation of pimeloyl-CoA and L-alanine to produce 8-amino-7-oxononanoate (AON), coenzyme A, and carbon dioxide. Myxococcus xanthus (strain DK 1622) (taxid: 246197) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|A6LMP4|BIOF_THEM4 8-amino-7-oxononanoate synthase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=Tmel_1346 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 132/231 (57%), Gaps = 23/231 (9%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K++L N+YLG ++ + AA + G+GP I G + H LE LA KK
Sbjct: 39 KKVLNLCSNNYLGFANEERLKNAAKQAVEKWGVGPGAVRTIAGTFSLHNELEETLAKFKK 98
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
E + +GF AN AVI A+ N E+ AI SD LNHASIIDG+R+++
Sbjct: 99 VEATIFLQSGFVANQAVIPAITN--------------EEDAILSDELNHASIIDGVRLSK 144
Query: 225 RTKMVEVFVYKHCDMSHLK-TLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
+ FV+KH D+ L+ L R+K+++TD +FSMDGD AP+ E+V+L KY
Sbjct: 145 AKR----FVWKHRDIKDLEEKLKEAKDARRKLIITDGVFSMDGDLAPLPEIVELAEKYNA 200
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334
++++DDAHG V G +G G+ + F VDI +GTLSKA G GG+IA +
Sbjct: 201 MVMVDDAHGEGVLGSHGRGIVDHFGLHGRVDIEIGTLSKAFGVLGGYIAGK 251
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Catalyzes the decarboxylative condensation of pimeloyl-CoA and L-alanine to produce 8-amino-7-oxononanoate (AON), coenzyme A and/or converts 2-amino-3-ketobutyrate to glycine and acetyl-CoA. Thermosipho melanesiensis (strain BI429 / DSM 12029) (taxid: 391009) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|B0KC20|BIOF_THEP3 8-amino-7-oxononanoate synthase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=Teth39_0287 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 132/232 (56%), Gaps = 24/232 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K ++ S N+YLGL++HP + KAA + G+G I G H LE LA+ K+
Sbjct: 42 KEVINLSSNNYLGLANHPRLKKAAIEAIEKWGVGAGAVRTIIGNMTIHEELERKLAEFKR 101
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
+E L +GF ANM VI AV + GD I SD LNHASIIDG R++
Sbjct: 102 EEAVLTFQSGFTANMGVIQAVVD-----KGD---------VIISDELNHASIIDGCRLSR 147
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCT--MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYG 282
+V +YKH DM L+ +L R K+++TD +FSMDGD A + E+VKL KY
Sbjct: 148 ----ADVVIYKHSDMEDLERVLKEVKDKYRVKMIITDGVFSMDGDIAKLPEIVKLAEKYS 203
Query: 283 FLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334
+ +DDAH + V G++G G A+ FN +DI +GTLSKA G GG++A +
Sbjct: 204 AITYVDDAHASGVLGESGRGSADHFNLHGRIDIQIGTLSKAIGVVGGYVAGK 255
|
Catalyzes the decarboxylative condensation of pimeloyl-CoA and L-alanine to produce 8-amino-7-oxononanoate (AON), coenzyme A and/or converts 2-amino-3-ketobutyrate to glycine and acetyl-CoA. Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) (taxid: 340099) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|A6TU88|BIOF_ALKMQ 8-amino-7-oxononanoate synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=Amet_3634 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 130/230 (56%), Gaps = 24/230 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K+++ S N+YLG ++HP I KAA ++G+G I G + H LE LA+ K+
Sbjct: 42 KKVINLSSNNYLGFANHPQIKKAAIDAVEKYGVGAGAVRTIVGNMDIHEELERVLAEFKR 101
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
+E ++ +GF N I AV L I SD LNHASIIDG R++
Sbjct: 102 EEAVMVFQSGFNCNAGTIQAVTEKGDL--------------IISDQLNHASIIDGARLSR 147
Query: 225 RTKMVEVFVYKHCDMSHLKTLL--SCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYG 282
K V +KH DM +L+ +L + R K+++TD +FSMDGD AP+ ++V+L KYG
Sbjct: 148 ADKTV----FKHADMDNLEQVLKENQDKYRNKLIITDGVFSMDGDIAPLPDIVELAEKYG 203
Query: 283 FLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
+ +DDAHG+ V G+NG G + F VD +GTLSKA G GG++A
Sbjct: 204 AMTYVDDAHGSGVLGENGRGTVDHFGLHGRVDFTIGTLSKAIGVIGGYVA 253
|
Catalyzes the decarboxylative condensation of pimeloyl-CoA and L-alanine to produce 8-amino-7-oxononanoate (AON), coenzyme A and/or converts 2-amino-3-ketobutyrate to glycine and acetyl-CoA. Alkaliphilus metalliredigens (strain QYMF) (taxid: 293826) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|B1YMC6|BIOF_EXIS2 8-amino-7-oxononanoate synthase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=Exig_1033 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 128/230 (55%), Gaps = 23/230 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K L+ S N+YLGL++HP +AK AA G G I G H+ E LA K
Sbjct: 38 KELIQLSSNNYLGLAAHPRLAKRAADAALEFGAGTGSVRTIAGTLEMHQAFERELATFKH 97
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
E L+ +GFA N+ V+ S L G E + SDALNHASIIDGIR+ +
Sbjct: 98 TEAALVFQSGFATNLGVL-------SALLGPED-------VVISDALNHASIIDGIRLTK 143
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCT-MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
+ + Y H D++ L+ L R ++VVTD +FSMDG+ AP+ E+V+L KY
Sbjct: 144 AKRRI----YNHVDLADLEAALQETQDARTRLVVTDGVFSMDGNIAPLPEIVELAEKYDA 199
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
L+++DDAH + V GK+G G F + V + VGTLSKA G GG++AC
Sbjct: 200 LVMVDDAHASGVLGKSGRGTVNHFGLDGRVALQVGTLSKAIGVLGGYVAC 249
|
Catalyzes the decarboxylative condensation of pimeloyl-CoA and L-alanine to produce 8-amino-7-oxononanoate (AON), coenzyme A and/or converts 2-amino-3-ketobutyrate to glycine and acetyl-CoA. Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) (taxid: 262543) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 334 | ||||||
| 356508270 | 477 | PREDICTED: 8-amino-7-oxononanoate syntha | 0.961 | 0.672 | 0.700 | 1e-135 | |
| 225443041 | 472 | PREDICTED: 8-amino-7-oxononanoate syntha | 0.961 | 0.680 | 0.694 | 1e-135 | |
| 356517746 | 477 | PREDICTED: 8-amino-7-oxononanoate syntha | 0.970 | 0.679 | 0.700 | 1e-134 | |
| 297806443 | 476 | predicted protein [Arabidopsis lyrata su | 0.961 | 0.674 | 0.682 | 1e-129 | |
| 42573269 | 476 | 8-amino-7-oxononanoate synthase [Arabido | 0.961 | 0.674 | 0.685 | 1e-129 | |
| 7406466 | 469 | 8-amino-7-oxononanoate synthase-like pro | 0.940 | 0.669 | 0.670 | 1e-125 | |
| 357455771 | 516 | 8-amino-7-oxononanoate synthase-like pro | 0.949 | 0.614 | 0.610 | 1e-123 | |
| 449456307 | 477 | PREDICTED: 8-amino-7-oxononanoate syntha | 0.976 | 0.683 | 0.687 | 1e-121 | |
| 148910045 | 546 | unknown [Picea sitchensis] | 0.964 | 0.589 | 0.606 | 1e-113 | |
| 255540735 | 484 | 8-amino-7-oxononanoate synthase, putativ | 0.724 | 0.5 | 0.776 | 1e-110 |
| >gi|356508270|ref|XP_003522881.1| PREDICTED: 8-amino-7-oxononanoate synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 236/337 (70%), Positives = 277/337 (82%), Gaps = 16/337 (4%)
Query: 4 SSLWDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGED---YEVFDEMQHW 60
S+ WDKWV EAL+ L +LKVLRS+RPI L R P G D ++VFDEMQ W
Sbjct: 5 SACWDKWVGEALATLHSLKVLRSVRPICL-------RNSQPLQFGVDDGAFQVFDEMQQW 57
Query: 61 DRNAVQISISDSTFQRWLHDVPSSGDENEIICGDGLANDKTITFARQFKRLLLFSGNDYL 120
DR++V++ I+++TF RW+HD PSSGDE I+C + D+ +FK+L+LFSGNDYL
Sbjct: 58 DRSSVEVEIAETTFSRWMHDTPSSGDE--IVCSAAVGGDEAGASYEKFKKLILFSGNDYL 115
Query: 121 GLSSHPTIAKAAAR----HGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFA 176
GLSSHPTI KAAA+ HGMGPRGSALICGYTNYHRLLES LADLKKKEDCLLCPTGFA
Sbjct: 116 GLSSHPTIGKAAAKAAQEHGMGPRGSALICGYTNYHRLLESSLADLKKKEDCLLCPTGFA 175
Query: 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH 236
ANMA++ A+G+I +LLAG+ +DEKIA+FSDALNHASIIDGIR+AER K V+V+VY+H
Sbjct: 176 ANMALMTAIGSIGTLLAGNRIPSEDEKIAVFSDALNHASIIDGIRLAERQKSVKVYVYRH 235
Query: 237 CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVC 296
CD+SHL LLS C MRKKVVVTDSLFSMDGD+APMVEL LR+K+GFLLV+DDAHGTFVC
Sbjct: 236 CDVSHLNMLLSNCRMRKKVVVTDSLFSMDGDYAPMVELADLRKKHGFLLVIDDAHGTFVC 295
Query: 297 GKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
GKNGGGVAE+FNCE+DVDIC+GTLSKAAGC GGFIAC
Sbjct: 296 GKNGGGVAEEFNCEKDVDICIGTLSKAAGCHGGFIAC 332
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443041|ref|XP_002268950.1| PREDICTED: 8-amino-7-oxononanoate synthase [Vitis vinifera] gi|297743573|emb|CBI36440.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/337 (69%), Positives = 277/337 (82%), Gaps = 16/337 (4%)
Query: 1 MENSSLWDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHW 60
ME +S WD WV++ALS+L +LK++RSLRPI+L NP D+EVF + W
Sbjct: 3 MEANS-WDSWVDQALSRLHSLKLIRSLRPIHLP---------NPLPTPRDFEVFHHLSPW 52
Query: 61 DRNAVQISISDSTFQRWLHDVPSSGDENEIICGDGLANDKTITFARQFKRLLLFSGNDYL 120
DR A++I IS+ TF +W++++PSSGDE CGDGL ++K ++ + LLLFSGNDYL
Sbjct: 53 DRLAIEIKISEPTFLKWVNEIPSSGDEAA--CGDGLDDEKVGVSHQKSRDLLLFSGNDYL 110
Query: 121 GLSSHPTIAKAAAR----HGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFA 176
GLSSHPTI KAAA+ HGMGPRGSAL+CGYTNYHRLLESCLADLKKKEDCLLCPTGFA
Sbjct: 111 GLSSHPTIGKAAAKAAQEHGMGPRGSALVCGYTNYHRLLESCLADLKKKEDCLLCPTGFA 170
Query: 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH 236
ANMA++VA+G+++SLL+ D+K KDE++AIFSDALNHASIIDGIR+AER E+FVY+H
Sbjct: 171 ANMALMVALGSVSSLLSADQKPLKDERVAIFSDALNHASIIDGIRLAERQGSAEIFVYRH 230
Query: 237 CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVC 296
CDM HL LLS CT+ KKVVVTDSLFSMDGDFAPM EL KLR+K+GFLLV+DDAHGTFVC
Sbjct: 231 CDMPHLNELLSSCTLEKKVVVTDSLFSMDGDFAPMAELAKLRKKHGFLLVIDDAHGTFVC 290
Query: 297 GKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
GKNGGGVAE+FNCE DVDICVGTLSKAAGC GGFIAC
Sbjct: 291 GKNGGGVAEEFNCESDVDICVGTLSKAAGCHGGFIAC 327
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517746|ref|XP_003527547.1| PREDICTED: 8-amino-7-oxononanoate synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/334 (70%), Positives = 274/334 (82%), Gaps = 10/334 (2%)
Query: 4 SSLWDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRN 63
S+ WD WV EAL L +LKVLRSLRPI L R + R G + ++VFDEMQHWDR+
Sbjct: 5 SACWDNWVGEALETLYSLKVLRSLRPICL----RSSQPREFGADDDAFQVFDEMQHWDRS 60
Query: 64 AVQISISDSTFQRWLHDVPSSGDENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLS 123
+V++ I+++TF RW+HD PSSGDE I+C + + +FK+L+LFSGNDYLGLS
Sbjct: 61 SVEVEIAETTFSRWMHDTPSSGDE--IVCSATGGDGEAGASYEKFKKLILFSGNDYLGLS 118
Query: 124 SHPTI----AKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179
SHPTI AKAA HGMGPRGSALICGYTNYHRLLES LADLKKKEDCLLCPTGFAANM
Sbjct: 119 SHPTIGKAVAKAAQEHGMGPRGSALICGYTNYHRLLESSLADLKKKEDCLLCPTGFAANM 178
Query: 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDM 239
A++ A+G+I +LLAG+ +DEKIA+FSDALNHASIIDGIR+ ER K V+V+VY+HCDM
Sbjct: 179 ALMTAIGSIGTLLAGNSIPSEDEKIAVFSDALNHASIIDGIRLTERQKSVKVYVYRHCDM 238
Query: 240 SHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKN 299
SHL LLS C MRKKVVVTDSLFSMDGD+APMVEL LR+++GFLLV+DDAHGTFVCGKN
Sbjct: 239 SHLNMLLSNCRMRKKVVVTDSLFSMDGDYAPMVELADLRKRHGFLLVIDDAHGTFVCGKN 298
Query: 300 GGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
GGGVAE+FNCE+DVDIC+GTLSKAAGC GGFIAC
Sbjct: 299 GGGVAEEFNCEKDVDICIGTLSKAAGCHGGFIAC 332
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297806443|ref|XP_002871105.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316942|gb|EFH47364.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/331 (68%), Positives = 272/331 (82%), Gaps = 10/331 (3%)
Query: 7 WDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQ 66
WDK VEEA++ LE+ ++LRSLRPI +S + V+ G+ G++YEVFD + WDR +V+
Sbjct: 6 WDKCVEEAVNVLESRQILRSLRPICMSRQNEEEIVKIIGNGGDEYEVFDGLCQWDRTSVE 65
Query: 67 ISISDSTFQRWLHDVPSSGDENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHP 126
+S+S TFQ+WLHD PS+G+E I GD LA + +FK+LLLFSGNDYLGLSSHP
Sbjct: 66 VSVSIPTFQKWLHDGPSNGEE--IFSGDALAESRK----GRFKKLLLFSGNDYLGLSSHP 119
Query: 127 TIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVI 182
TI+ AAA +GMGP+GSALICGYT YHRLLE+ LA+LKKKEDCL+CPTGFAANMA +
Sbjct: 120 TISNAAANAAKEYGMGPKGSALICGYTTYHRLLETSLAELKKKEDCLVCPTGFAANMAAM 179
Query: 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHL 242
VA+G++ASLLA K K+EK+AIFSDALNHASIIDG+R+AER VEVFVY+HCDM HL
Sbjct: 180 VAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDMYHL 239
Query: 243 KTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG 302
+LLS C M++KVVVTDSLFSMDGDFAPM EL +LR+KYGFLLV+DDAHGTFVCG+ GGG
Sbjct: 240 NSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGETGGG 299
Query: 303 VAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
VAE+FNCE DVD+CVGTLSKAAGC GGFIAC
Sbjct: 300 VAEEFNCEADVDLCVGTLSKAAGCHGGFIAC 330
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42573269|ref|NP_974731.1| 8-amino-7-oxononanoate synthase [Arabidopsis thaliana] gi|67847131|gb|AAY82238.1| 7-keto-8-amino pelargonic acid synthase [Arabidopsis thaliana] gi|332003382|gb|AED90765.1| 8-amino-7-oxononanoate synthase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/331 (68%), Positives = 271/331 (81%), Gaps = 10/331 (3%)
Query: 7 WDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQ 66
WDK VEEA++ LE+ ++LRSLRPI +S + V++ + G+ YEVFD + WDR +V+
Sbjct: 6 WDKTVEEAVNVLESRQILRSLRPICMSRQNEEEIVKSRANGGDGYEVFDGLCQWDRTSVE 65
Query: 67 ISISDSTFQRWLHDVPSSGDENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHP 126
+S+S TFQ+WLHD PS+G+E I GD LA + +FK+LLLFSGNDYLGLSSHP
Sbjct: 66 VSVSIPTFQKWLHDEPSNGEE--IFSGDALAECRK----GRFKKLLLFSGNDYLGLSSHP 119
Query: 127 TIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVI 182
TI+ AAA +GMGP+GSALICGYT YHRLLES LA LKKKEDCL+CPTGFAANMA +
Sbjct: 120 TISNAAANAVKEYGMGPKGSALICGYTTYHRLLESSLAQLKKKEDCLVCPTGFAANMAAM 179
Query: 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHL 242
VA+G++ASLLA K K+EK+AIFSDALNHASIIDG+R+AER VEVFVY+HCDM HL
Sbjct: 180 VAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDMYHL 239
Query: 243 KTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG 302
+LLS C M++KVVVTDSLFSMDGDFAPM EL +LR+KYGFLLV+DDAHGTFVCG+NGGG
Sbjct: 240 NSLLSNCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGG 299
Query: 303 VAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
VAE+FNCE DVD+CVGTLSKAAGC GGFIAC
Sbjct: 300 VAEEFNCEADVDLCVGTLSKAAGCHGGFIAC 330
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7406466|emb|CAB85568.1| 8-amino-7-oxononanoate synthase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/331 (67%), Positives = 267/331 (80%), Gaps = 17/331 (5%)
Query: 7 WDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQ 66
WDK VEEA++ LE+ ++LRSLRPI +S + V++ + G+ YEVFD + WDR +V+
Sbjct: 6 WDKTVEEAVNVLESRQILRSLRPICMSRQNEEEIVKSRANGGDGYEVFDGLCQWDRTSVE 65
Query: 67 ISISDSTFQRWLHDVPSSGDENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHP 126
+S+S TFQ+WLHD PS+G+E I GD LA + +FK+LLLFSGNDYLGLSSHP
Sbjct: 66 VSVSIPTFQKWLHDEPSNGEE--IFSGDALAECRK----GRFKKLLLFSGNDYLGLSSHP 119
Query: 127 TIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVI 182
TI+ AAA +GMGP+GSALICGYT YHRLLES LA LKKKEDCL+CPTGFAANMA +
Sbjct: 120 TISNAAANAVKEYGMGPKGSALICGYTTYHRLLESSLAQLKKKEDCLVCPTGFAANMAAM 179
Query: 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHL 242
VA+G++ASLLA K K+EK+AIFSDALNHASIIDG+R+AER VEVFVY+HCD+S+
Sbjct: 180 VAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDISN- 238
Query: 243 KTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG 302
C M++KVVVTDSLFSMDGDFAPM EL +LR+KYGFLLV+DDAHGTFVCG+NGGG
Sbjct: 239 ------CKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGG 292
Query: 303 VAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
VAE+FNCE DVD+CVGTLSKAAGC GGFIAC
Sbjct: 293 VAEEFNCEADVDLCVGTLSKAAGCHGGFIAC 323
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455771|ref|XP_003598166.1| 8-amino-7-oxononanoate synthase-like protein [Medicago truncatula] gi|355487214|gb|AES68417.1| 8-amino-7-oxononanoate synthase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/372 (61%), Positives = 276/372 (74%), Gaps = 55/372 (14%)
Query: 7 WDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQ 66
W+KWVEEAL+ L++L+VLRSLRPI L RV + ++VFDEM WDR++V+
Sbjct: 10 WEKWVEEALTTLDSLRVLRSLRPICL------QRVVD----DHAFQVFDEMHQWDRSSVE 59
Query: 67 ISISDSTFQRWLHDVPSS----------------------------GD----ENEIICGD 94
+ I ++TF++W+HD PSS GD EI+ G
Sbjct: 60 VEIGETTFRKWMHDTPSSDRIMNDNIREQLRLGVAPIVEKWLNLDFGDLGVCGEEIVYGA 119
Query: 95 GLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAKAAAR----HGMGPRGSALICGYTN 150
+++ +F++L+LFSGNDYLGLSSHPTI KAAA+ HGMGPRGSALICGYTN
Sbjct: 120 ASGDNEPGVCHEKFRKLILFSGNDYLGLSSHPTIGKAAAKAAQEHGMGPRGSALICGYTN 179
Query: 151 YHRLLESCLADLKKKE---------DCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKD 201
YHR LES LADLKKKE DCLLCPTGFAANMA++ A+G+I SLLAG+ D
Sbjct: 180 YHRQLESSLADLKKKESIWGKVMFKDCLLCPTGFAANMALMTAIGSIGSLLAGNSIPSDD 239
Query: 202 EKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSL 261
EKIA+FSDALNHASIIDGIR+AER K V+++VY+HCDMSHL TLLS C+M++K+V+TDSL
Sbjct: 240 EKIAVFSDALNHASIIDGIRLAERRKGVKLYVYRHCDMSHLHTLLSHCSMKRKIVITDSL 299
Query: 262 FSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLS 321
FSMDGDFAPMVEL +LR+K+GFLLV+DDAHGTFVCGKNGGGVAE+FNCE+DVDIC+GTLS
Sbjct: 300 FSMDGDFAPMVELAELRKKHGFLLVIDDAHGTFVCGKNGGGVAEEFNCEKDVDICIGTLS 359
Query: 322 KAAGCQGGFIAC 333
KAAGC GGFIAC
Sbjct: 360 KAAGCHGGFIAC 371
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456307|ref|XP_004145891.1| PREDICTED: 8-amino-7-oxononanoate synthase-like [Cucumis sativus] gi|449526960|ref|XP_004170481.1| PREDICTED: 8-amino-7-oxononanoate synthase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/333 (68%), Positives = 269/333 (80%), Gaps = 7/333 (2%)
Query: 5 SLWDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNA 64
S+WD VEEAL+KL L++LRSLRPI S + G ++ +VFDEMQ WDR +
Sbjct: 2 SVWDCCVEEALAKLGLLQLLRSLRPITPSLEKLNPEASIEGKKDDELKVFDEMQPWDRAS 61
Query: 65 VQISISDSTFQRWLHDVPSSGDENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSS 124
V++ I++ST Q+WL D+PSSGDE I +G A + +QFK+L+LFSGNDYLGLSS
Sbjct: 62 VEVEIAESTVQKWLLDIPSSGDE---IVTEGGAIKCLVDHPQQFKKLVLFSGNDYLGLSS 118
Query: 125 HPTIAKAAAR----HGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMA 180
HPTI +AAA+ H MGPRGSALICGYT +HRLLESCLA LKKKEDCLLCPTGFAANMA
Sbjct: 119 HPTIGRAAAQAALEHRMGPRGSALICGYTFHHRLLESCLAKLKKKEDCLLCPTGFAANMA 178
Query: 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMS 240
++VA+GNI SLL + S D+KIAIFSD+LNHASIIDGIR+AER + V++F+Y+HCDM+
Sbjct: 179 LMVAIGNIGSLLTEGKASSDDQKIAIFSDSLNHASIIDGIRLAERQRNVKLFIYRHCDMA 238
Query: 241 HLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNG 300
HL LLS CT+ KKVVVTDSLFSMDGDFAPM EL LR+K+GFLLV+DDAHGTFVCGKNG
Sbjct: 239 HLNDLLSSCTLTKKVVVTDSLFSMDGDFAPMKELAMLRKKHGFLLVIDDAHGTFVCGKNG 298
Query: 301 GGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
GGVAE FNCERDVDICVGTLSKAAGC GGFIAC
Sbjct: 299 GGVAEMFNCERDVDICVGTLSKAAGCFGGFIAC 331
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|148910045|gb|ABR18106.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
|---|
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/361 (60%), Positives = 264/361 (73%), Gaps = 39/361 (10%)
Query: 7 WDKWVEEALSKLEALKVLRSLRPIYLSPND---------------------RHHRVRNPG 45
WD W++EAL KLE K LRSLRP+ P++ +R PG
Sbjct: 5 WDFWLDEALKKLETTKHLRSLRPLLTVPSEGSLPSYAYPPIAIATLDDDDVSPTHLRLPG 64
Query: 46 HVGE---------DYEVFDEMQHWDRNAVQISISDSTFQRWLHDVPSSGDENEIICG-DG 95
+ GE ++E FD + WDR++V + IS++TFQ W+++ S+G E C D
Sbjct: 65 Y-GEAETLINHEDEFETFDGLGPWDRSSVVVKISEATFQLWINNRCSTGQET---CDFDI 120
Query: 96 LANDKTITFARQFKRLLLFSGNDYLGLSSHPTI----AKAAARHGMGPRGSALICGYTNY 151
L ++ + A+ F++LLLFSGNDYLGLS+HPT+ AKAA HGMGPRGSAL+CGYT Y
Sbjct: 121 LLDNVMESRAQPFRKLLLFSGNDYLGLSAHPTVRRAAAKAAQEHGMGPRGSALVCGYTYY 180
Query: 152 HRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDAL 211
HRLLES LADLKKKED LLCPTGFAANMAV+ A+G+++SLL+ + DEKIAIFSDAL
Sbjct: 181 HRLLESALADLKKKEDSLLCPTGFAANMAVMTALGSLSSLLSFSGRPTNDEKIAIFSDAL 240
Query: 212 NHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPM 271
NHASIIDGIR+AER +VFVY+HCDM HL LLSCC ++KKVVVTDSLFSMDGDFAPM
Sbjct: 241 NHASIIDGIRLAERQGEAKVFVYRHCDMVHLDQLLSCCKLKKKVVVTDSLFSMDGDFAPM 300
Query: 272 VELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFI 331
VEL LR+K+GFLLV+DDAHGT VCG+NGGGVAEQFN E D+DICVGTLSKA GCQGGFI
Sbjct: 301 VELADLRKKHGFLLVIDDAHGTLVCGENGGGVAEQFNVESDIDICVGTLSKAVGCQGGFI 360
Query: 332 A 332
A
Sbjct: 361 A 361
|
Source: Picea sitchensis Species: Picea sitchensis Genus: Picea Family: Pinaceae Order: Coniferales Class: Coniferopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540735|ref|XP_002511432.1| 8-amino-7-oxononanoate synthase, putative [Ricinus communis] gi|223550547|gb|EEF52034.1| 8-amino-7-oxononanoate synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/250 (77%), Positives = 218/250 (87%), Gaps = 8/250 (3%)
Query: 88 NEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAKAAAR----HGMGPRGSA 143
+EI+ G+G+ + Q K+LLLFSGNDYLGLS+HPTI KAAA+ HGMGPRGSA
Sbjct: 67 DEIVSGNGVMGH----YVEQSKKLLLFSGNDYLGLSAHPTIGKAAAKAAQEHGMGPRGSA 122
Query: 144 LICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEK 203
LICGYTNYHRLLES LA+LKKKEDCLLCPTGFAANMAV+VA+GNI+SLLA E K EK
Sbjct: 123 LICGYTNYHRLLESSLANLKKKEDCLLCPTGFAANMAVMVALGNISSLLASAEIPLKKEK 182
Query: 204 IAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFS 263
IAIFSD LNHASIIDGIR+AER + VEV VYKHCDMSHL +LLS C ++KKVVVTDSLFS
Sbjct: 183 IAIFSDTLNHASIIDGIRLAERQQNVEVHVYKHCDMSHLSSLLSNCALKKKVVVTDSLFS 242
Query: 264 MDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKA 323
MDGDFAPM ELVKLR+++GFLLV+DDAHGTF+CGKNGGGVAE+FNCE+DVDICVGTLSKA
Sbjct: 243 MDGDFAPMAELVKLRKRHGFLLVIDDAHGTFICGKNGGGVAEEFNCEKDVDICVGTLSKA 302
Query: 324 AGCQGGFIAC 333
AGC GGFIAC
Sbjct: 303 AGCHGGFIAC 312
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 334 | ||||||
| TAIR|locus:2184397 | 476 | BIOF "biotin F" [Arabidopsis t | 0.961 | 0.674 | 0.685 | 3.2e-120 | |
| UNIPROTKB|A9BGL0 | 393 | Pmob_1549 "8-amino-7-oxononano | 0.616 | 0.524 | 0.411 | 3e-37 | |
| UNIPROTKB|B0K590 | 395 | Teth514_0779 "8-amino-7-oxonon | 0.616 | 0.521 | 0.417 | 1.3e-36 | |
| UNIPROTKB|B0KC20 | 395 | Teth39_0287 "8-amino-7-oxonona | 0.616 | 0.521 | 0.417 | 2.1e-36 | |
| UNIPROTKB|A6TU88 | 395 | Amet_3634 "8-amino-7-oxononano | 0.616 | 0.521 | 0.4 | 4.4e-36 | |
| UNIPROTKB|A7HMM1 | 395 | Fnod_1307 "8-amino-7-oxononano | 0.619 | 0.524 | 0.396 | 1.1e-34 | |
| UNIPROTKB|A8MEX7 | 395 | Clos_0909 "8-amino-7-oxononano | 0.616 | 0.521 | 0.369 | 9.5e-34 | |
| UNIPROTKB|B5Y9Z4 | 393 | COPRO5265_1289 "8-amino-7-oxon | 0.616 | 0.524 | 0.408 | 1.5e-33 | |
| UNIPROTKB|Q73KM3 | 395 | TDE_2194 "8-amino-7-oxononanoa | 0.730 | 0.617 | 0.345 | 2.3e-32 | |
| TIGR_CMR|SPO_2596 | 407 | SPO_2596 "5-aminolevulinic aci | 0.622 | 0.511 | 0.371 | 2.3e-32 |
| TAIR|locus:2184397 BIOF "biotin F" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
Identities = 227/331 (68%), Positives = 271/331 (81%)
Query: 7 WDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQ 66
WDK VEEA++ LE+ ++LRSLRPI +S + V++ + G+ YEVFD + WDR +V+
Sbjct: 6 WDKTVEEAVNVLESRQILRSLRPICMSRQNEEEIVKSRANGGDGYEVFDGLCQWDRTSVE 65
Query: 67 ISISDSTFQRWLHDVPSSGDENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHP 126
+S+S TFQ+WLHD PS+G+E I GD LA + +FK+LLLFSGNDYLGLSSHP
Sbjct: 66 VSVSIPTFQKWLHDEPSNGEE--IFSGDALAECRK----GRFKKLLLFSGNDYLGLSSHP 119
Query: 127 TIAKAAAR----HGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVI 182
TI+ AAA +GMGP+GSALICGYT YHRLLES LA LKKKEDCL+CPTGFAANMA +
Sbjct: 120 TISNAAANAVKEYGMGPKGSALICGYTTYHRLLESSLAQLKKKEDCLVCPTGFAANMAAM 179
Query: 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHL 242
VA+G++ASLLA K K+EK+AIFSDALNHASIIDG+R+AER VEVFVY+HCDM HL
Sbjct: 180 VAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDMYHL 239
Query: 243 KTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG 302
+LLS C M++KVVVTDSLFSMDGDFAPM EL +LR+KYGFLLV+DDAHGTFVCG+NGGG
Sbjct: 240 NSLLSNCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGG 299
Query: 303 VAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
VAE+FNCE DVD+CVGTLSKAAGC GGFIAC
Sbjct: 300 VAEEFNCEADVDLCVGTLSKAAGCHGGFIAC 330
|
|
| UNIPROTKB|A9BGL0 Pmob_1549 "8-amino-7-oxononanoate synthase" [Petrotoga mobilis SJ95 (taxid:403833)] | Back alignment and assigned GO terms |
|---|
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 95/231 (41%), Positives = 137/231 (59%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAARH----GMGPRGSALICGYTNYHRLLESCLADLKK 164
K++L N+YLGL+++ + +AA G+GP I G H LE LA+ KK
Sbjct: 39 KKVLNMCSNNYLGLANNERLKEAAINAIKNWGVGPGAVRTIAGTMKIHEELEKKLAEFKK 98
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
E L+ +GF AN AVI + N E+ I SD LNHASIIDG+R+++
Sbjct: 99 VEATLVVQSGFNANQAVIPTITN--------------EEDGILSDELNHASIIDGVRLSK 144
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCC---TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKY 281
+ +++KH D++ L+ L R+K+++TD +FSMDGD AP+ +V+L +KY
Sbjct: 145 AKR----YIWKHKDLNSLEEQLVKAQRDNCRRKLIITDGVFSMDGDIAPLPGIVELAKKY 200
Query: 282 GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
L+++DDAHG V G+NG G+A+ FN +VDI +GTLSKA G GGFIA
Sbjct: 201 DALVMVDDAHGEGVLGENGRGIADHFNLTEEVDIEIGTLSKAFGVVGGFIA 251
|
|
| UNIPROTKB|B0K590 Teth514_0779 "8-amino-7-oxononanoate synthase" [Thermoanaerobacter sp. X514 (taxid:399726)] | Back alignment and assigned GO terms |
|---|
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 96/230 (41%), Positives = 132/230 (57%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K+++ S N+YLGL++HP + KAA + G+G I G H LE LA+ K+
Sbjct: 42 KKVINLSSNNYLGLANHPRLKKAAIEAIEKWGVGAGAVRTIIGNMTIHEELERKLAEFKR 101
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
+E L +GF ANM VI AV + GD I SD LNHASIIDG R++
Sbjct: 102 EEAVLTFQSGFTANMGVIQAVVD-----KGD---------VIISDELNHASIIDGCRLSR 147
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCT--MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYG 282
+V +YKH DM L+ +L R K+++TD +FSMDGD A + E+VKL KY
Sbjct: 148 ----ADVVIYKHSDMEDLERVLKEVKDKYRVKMIITDGVFSMDGDIAKLPEIVKLAEKYS 203
Query: 283 FLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
+ +DDAH + V G++G G A+ FN +DI +GTLSKA G GG++A
Sbjct: 204 AITYVDDAHASGVLGESGRGSADHFNLHGRIDIQIGTLSKAIGVVGGYVA 253
|
|
| UNIPROTKB|B0KC20 Teth39_0287 "8-amino-7-oxononanoate synthase" [Thermoanaerobacter pseudethanolicus ATCC 33223 (taxid:340099)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 96/230 (41%), Positives = 131/230 (56%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K ++ S N+YLGL++HP + KAA + G+G I G H LE LA+ K+
Sbjct: 42 KEVINLSSNNYLGLANHPRLKKAAIEAIEKWGVGAGAVRTIIGNMTIHEELERKLAEFKR 101
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
+E L +GF ANM VI AV + GD I SD LNHASIIDG R++
Sbjct: 102 EEAVLTFQSGFTANMGVIQAVVD-----KGD---------VIISDELNHASIIDGCRLSR 147
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCT--MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYG 282
+V +YKH DM L+ +L R K+++TD +FSMDGD A + E+VKL KY
Sbjct: 148 ----ADVVIYKHSDMEDLERVLKEVKDKYRVKMIITDGVFSMDGDIAKLPEIVKLAEKYS 203
Query: 283 FLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
+ +DDAH + V G++G G A+ FN +DI +GTLSKA G GG++A
Sbjct: 204 AITYVDDAHASGVLGESGRGSADHFNLHGRIDIQIGTLSKAIGVVGGYVA 253
|
|
| UNIPROTKB|A6TU88 Amet_3634 "8-amino-7-oxononanoate synthase" [Alkaliphilus metalliredigens QYMF (taxid:293826)] | Back alignment and assigned GO terms |
|---|
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 92/230 (40%), Positives = 131/230 (56%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K+++ S N+YLG ++HP I KAA ++G+G I G + H LE LA+ K+
Sbjct: 42 KKVINLSSNNYLGFANHPQIKKAAIDAVEKYGVGAGAVRTIVGNMDIHEELERVLAEFKR 101
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
+E ++ +GF N I AV GD I SD LNHASIIDG R++
Sbjct: 102 EEAVMVFQSGFNCNAGTIQAVTE-----KGD---------LIISDQLNHASIIDGARLSR 147
Query: 225 RTKMVEVFVYKHCDMSHLKTLL--SCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYG 282
K V +KH DM +L+ +L + R K+++TD +FSMDGD AP+ ++V+L KYG
Sbjct: 148 ADKTV----FKHADMDNLEQVLKENQDKYRNKLIITDGVFSMDGDIAPLPDIVELAEKYG 203
Query: 283 FLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
+ +DDAHG+ V G+NG G + F VD +GTLSKA G GG++A
Sbjct: 204 AMTYVDDAHGSGVLGENGRGTVDHFGLHGRVDFTIGTLSKAIGVIGGYVA 253
|
|
| UNIPROTKB|A7HMM1 Fnod_1307 "8-amino-7-oxononanoate synthase" [Fervidobacterium nodosum Rt17-B1 (taxid:381764)] | Back alignment and assigned GO terms |
|---|
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 92/232 (39%), Positives = 128/232 (55%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAARH----GMGPRGSALICGYTNYHRLLESCLADLKK 164
KR+L N+YLG +S + +AA + G+GP I G H LE LA+ K
Sbjct: 39 KRVLNLCSNNYLGFASDERLKQAAKKAIDEWGVGPGAVRTIAGTMKIHEELEKALAEFKG 98
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
+ + +GF AN A I V F DE AI SD LNHASIIDG+R+++
Sbjct: 99 ADATIFLQSGFIANQAAIPTV-------------FGDENDAIISDELNHASIIDGVRLSK 145
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCT----MRKKVVVTDSLFSMDGDFAPMVELVKLRRK 280
+ +VYKH DM+ L+ L R+ +++TD +FSMDGD AP+ E+V+L K
Sbjct: 146 AKR----YVYKHNDMNELEARLKEARDVQKARRILIITDGVFSMDGDIAPLPEIVELAEK 201
Query: 281 YGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
Y +++DDAHG V G+ G G+ + F VD+ +GTLSKA G GG+IA
Sbjct: 202 YEAAVMVDDAHGEGVLGRGGRGIVDHFGLHGRVDMEIGTLSKAFGVLGGYIA 253
|
|
| UNIPROTKB|A8MEX7 Clos_0909 "8-amino-7-oxononanoate synthase" [Alkaliphilus oremlandii OhILAs (taxid:350688)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 85/230 (36%), Positives = 128/230 (55%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K+++ S N+YLG ++HP + KAA ++G+G I G + H +L+ LA+ K+
Sbjct: 42 KKVINLSSNNYLGFANHPRLKKAAIEAVEKYGVGSGAVRTIVGNMDIHEILDKKLAEFKR 101
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
+E + +GF N I A+ GD I SD LNHASIIDG R++
Sbjct: 102 EEAVMSFQSGFNCNAGTIQAITE-----KGD---------LIISDELNHASIIDGARLSR 147
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCT--MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYG 282
K + +KH DM++L+ +L R +++TD +FSMDGD AP+ ++V L KY
Sbjct: 148 ADKTI----FKHADMNNLEEVLKANRDKYRNMLIITDGVFSMDGDIAPLPDIVGLAEKYN 203
Query: 283 FLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
+ +DDAHG+ V G++G G + F VD +GTLSKA G GG++A
Sbjct: 204 AMTYVDDAHGSGVLGESGRGTVDHFGLHGRVDFTIGTLSKAIGVVGGYVA 253
|
|
| UNIPROTKB|B5Y9Z4 COPRO5265_1289 "8-amino-7-oxononanoate synthase" [Coprothermobacter proteolyticus DSM 5265 (taxid:309798)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 94/230 (40%), Positives = 128/230 (55%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAAR----HGMGPRGSALICGYTNYHRLLESCLADLKK 164
K++L S N+YLG ++HP + +AA + +G GP I G LE LA+ K
Sbjct: 38 KKVLNLSSNNYLGFANHPRLKEAAKKGIDDYGAGPAAVRTIAGDQLPQEKLEEMLAEFKG 97
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
E +L +GF AN+ I A L G E AIFSD LNHASIIDG R++
Sbjct: 98 AEAAVLYQSGFCANLGTIPA-------LVG-------EGDAIFSDELNHASIIDGCRLS- 142
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSC--CTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYG 282
R K++ Y H ++ L+ LL +K +++TD +FSMDGD APM +L L KY
Sbjct: 143 RAKIIR---YPHLNVQTLEELLKQERQNYKKAMIITDGVFSMDGDIAPMDKLADLADKYQ 199
Query: 283 FLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
+L +DDAHG V G +G G+ + F + VD+ +GTLSKA G GGF A
Sbjct: 200 CILYVDDAHGEGVLGDSGRGIVDYFGLQGRVDVEIGTLSKAFGVVGGFAA 249
|
|
| UNIPROTKB|Q73KM3 TDE_2194 "8-amino-7-oxononanoate synthase" [Treponema denticola ATCC 35405 (taxid:243275)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 94/272 (34%), Positives = 144/272 (52%)
Query: 68 SISDSTF-QRWLHDVPSSGDENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHP 126
+I D F Q+ + ++ G E++ +G ++ + + K+++ S N+YLG ++HP
Sbjct: 3 NIHDMEFLQKKVQELKEQGLYKELVTLEGPSDAECVING---KKVINLSSNNYLGFANHP 59
Query: 127 TIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVI 182
+ KAA ++G G I G H LE LA+ K++E L +GF N VI
Sbjct: 60 RLKKAAIEAIEKYGAGAGAVRPIIGNMKIHDDLEKLLAEFKREEAVLAFQSGFNCNAGVI 119
Query: 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHL 242
A+ + GD I SD LNHASIIDG R+++ K V ++H DM+ L
Sbjct: 120 QALTD-----KGD---------LIISDQLNHASIIDGTRLSKADKAV----FQHSDMADL 161
Query: 243 KTLLS--CCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNG 300
+ +L +++TD +FSMDGD A + E+V L KY L +DDAH + V G++G
Sbjct: 162 ERVLKEKRNNYNNVLIITDGVFSMDGDIAKLPEIVALAEKYNCLTYVDDAHSSGVLGESG 221
Query: 301 GGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
G + F VD+ +GTLSKA G GG++A
Sbjct: 222 RGTVDHFKLHGRVDVAMGTLSKAIGVVGGYVA 253
|
|
| TIGR_CMR|SPO_2596 SPO_2596 "5-aminolevulinic acid synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 85/229 (37%), Positives = 128/229 (55%)
Query: 109 KRLLLFSGNDYLGLSSHPTIA----KAAARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K + ++ GNDYLG+ +P + +A G G G+ I G T YH+ LE+ LADL
Sbjct: 46 KEITVWCGNDYLGMGQNPVVLDAMQEALVAAGAGSGGTRNISGTTVYHKRLEAELADLHG 105
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
KE LL + + AN A + + L G + I+SDALNHAS+I+G+R
Sbjct: 106 KEAALLFTSAYIANDATL---STLPKLFPG---------LIIYSDALNHASMIEGVRRNG 153
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCT-MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
K + ++H D++HL+ LL+ K++V +S++SMDGDF P+ ++ L ++G
Sbjct: 154 GAKRI----FRHNDVAHLRELLAADDPAAPKLIVFESVYSMDGDFGPIADICDLADEFGA 209
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
L +D+ H + G GGGV E+ N +DI GTL+KA G GG+IA
Sbjct: 210 LTYIDEVHAVGMYGPRGGGVTERDNLAHRIDIINGTLAKAYGVMGGYIA 258
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 334 | |||
| PLN02955 | 476 | PLN02955, PLN02955, 8-amino-7-oxononanoate synthas | 0.0 | |
| COG0156 | 388 | COG0156, BioF, 7-keto-8-aminopelargonate synthetas | 4e-79 | |
| cd06454 | 349 | cd06454, KBL_like, KBL_like; this family belongs t | 1e-77 | |
| PRK05958 | 385 | PRK05958, PRK05958, 8-amino-7-oxononanoate synthas | 9e-77 | |
| TIGR00858 | 360 | TIGR00858, bioF, 8-amino-7-oxononanoate synthase | 2e-72 | |
| PRK06939 | 397 | PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzym | 4e-59 | |
| PRK09064 | 407 | PRK09064, PRK09064, 5-aminolevulinate synthase; Va | 7e-56 | |
| TIGR01825 | 385 | TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-depe | 1e-55 | |
| TIGR01821 | 402 | TIGR01821, 5aminolev_synth, 5-aminolevulinic acid | 8e-53 | |
| TIGR01822 | 393 | TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate co | 1e-47 | |
| PRK13392 | 410 | PRK13392, PRK13392, 5-aminolevulinate synthase; Pr | 2e-46 | |
| PRK13393 | 406 | PRK13393, PRK13393, 5-aminolevulinate synthase; Pr | 3e-46 | |
| PRK07179 | 407 | PRK07179, PRK07179, hypothetical protein; Provisio | 8e-30 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 6e-28 | |
| PLN02483 | 489 | PLN02483, PLN02483, serine palmitoyltransferase | 7e-25 | |
| PRK07505 | 402 | PRK07505, PRK07505, hypothetical protein; Provisio | 7e-21 | |
| PLN03227 | 392 | PLN03227, PLN03227, serine palmitoyltransferase-li | 3e-19 | |
| PLN02822 | 481 | PLN02822, PLN02822, serine palmitoyltransferase | 5e-17 | |
| PRK05937 | 370 | PRK05937, PRK05937, 8-amino-7-oxononanoate synthas | 7e-17 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 6e-04 |
| >gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Score = 536 bits (1381), Expect = 0.0
Identities = 232/337 (68%), Positives = 279/337 (82%), Gaps = 11/337 (3%)
Query: 1 MENSSLWDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHW 60
M + S WDKWVEEA++ LE+ ++LRSLRPI +S + V++ + G+DYEVFD + W
Sbjct: 1 MADHS-WDKWVEEAVNVLESRQILRSLRPICMSRQNEEEIVKSRANGGDDYEVFDGLCQW 59
Query: 61 DRNAVQISISDSTFQRWLHDVPSSGDENEIICGDGLANDKTITFARQFKRLLLFSGNDYL 120
DR +V++S+S TFQ+WLHD+PS+G+E I GD LA ++ +FK+LLLFSGNDYL
Sbjct: 60 DRTSVEVSVSIPTFQKWLHDIPSNGEE--IFSGDALAEERK----GRFKKLLLFSGNDYL 113
Query: 121 GLSSHPTIAKAAAR----HGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFA 176
GLSSHPTI+ AAA +GMGP+GSALICGYT YHRLLES LADLKKKEDCL+CPTGFA
Sbjct: 114 GLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFA 173
Query: 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH 236
ANMA +VA+G++ASLLA K K+EK+AIFSDALNHASIIDG+R+AER VEVFVY+H
Sbjct: 174 ANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH 233
Query: 237 CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVC 296
CDM HL +LLS C M++KVVVTDSLFSMDGDFAPM EL +LR+KYGFLLV+DDAHGTFVC
Sbjct: 234 CDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVC 293
Query: 297 GKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
G+NGGGVAE+FNCE DVD+CVGTLSKAAGC GGFIAC
Sbjct: 294 GENGGGVAEEFNCEADVDLCVGTLSKAAGCHGGFIAC 330
|
Length = 476 |
| >gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 246 bits (629), Expect = 4e-79
Identities = 106/233 (45%), Positives = 138/233 (59%), Gaps = 26/233 (11%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
+++L F NDYLGL+SHP + +AA R+G+G GS LI G ++ H LE LAD
Sbjct: 39 RKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLG 98
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
E LL +GF AN+ ++ A + IFSD LNHASIIDGIR++
Sbjct: 99 AEAALLFSSGFVANLGLLSA--------------LLKKGDLIFSDELNHASIIDGIRLSR 144
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCT---MRKKVVVTDSLFSMDGDFAPMVELVKLRRKY 281
EV +KH D+ HL+ LL R+K++VT+ +FSMDGD AP+ ELV+L KY
Sbjct: 145 ----AEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKY 200
Query: 282 GFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQGGFIAC 333
G LL +D+AH V G NG G+AE F E +VDI VGTL KA G GG+IA
Sbjct: 201 GALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGYIAG 253
|
Length = 388 |
| >gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Score = 240 bits (616), Expect = 1e-77
Identities = 97/232 (41%), Positives = 134/232 (57%), Gaps = 24/232 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K++L F NDYLGL++HP + +AA ++G+G GS LI G ++ H LE LA+
Sbjct: 1 KKVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHG 60
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
KE L+ +G+AAN V+ + + I SD+LNHASIIDGIR++
Sbjct: 61 KEAALVFSSGYAANDGVL--------------STLAGKGDLIISDSLNHASIIDGIRLSG 106
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTM--RKKVVVTDSLFSMDGDFAPMVELVKLRRKYG 282
K ++KH DM L+ LL KK++VT+ ++SMDGD AP+ ELV L +KYG
Sbjct: 107 AKK----RIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYG 162
Query: 283 FLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334
+L +D+AH V G +G GV E DVDI +GTL KA G GG+IA
Sbjct: 163 AILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVGGYIAGS 214
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349 |
| >gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Score = 240 bits (614), Expect = 9e-77
Identities = 93/230 (40%), Positives = 128/230 (55%), Gaps = 23/230 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTI----AKAAARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
+R+L F+ NDYLGL+ HP + +AA R+G G GS L+ G + H LE LA+
Sbjct: 39 RRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG 98
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
E LL +G+AAN+AV+ A+ GD I SD LNHAS+IDG R++
Sbjct: 99 AERALLFSSGYAANLAVLTALAG-----KGD---------LIVSDKLNHASLIDGARLSR 144
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFL 284
V Y H D+ L+ LL+ + ++VT+S+FSMDGD AP+ ELV L R++G
Sbjct: 145 ----ARVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGAW 200
Query: 285 LVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQGGFIAC 333
L++D+AHGT V G G G+A + I VGTL KA G G +
Sbjct: 201 LLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSGAAVLG 250
|
Length = 385 |
| >gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Score = 227 bits (582), Expect = 2e-72
Identities = 103/234 (44%), Positives = 136/234 (58%), Gaps = 24/234 (10%)
Query: 106 RQFKRLLLFSGNDYLGLSSHPTI----AKAAARHGMGPRGSALICGYTNYHRLLESCLAD 161
R +RLL FS NDYLGL+SHP + + A ++G G S L+ G + H LE LA+
Sbjct: 13 RDGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAE 72
Query: 162 LKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIR 221
K E LL +G+ AN+ VI A+ + GD I SDALNHAS+IDG R
Sbjct: 73 WKGTEAALLFSSGYLANVGVISAL-----VGKGD---------LILSDALNHASLIDGCR 118
Query: 222 IAERTKMVEVFVYKHCDMSHLKTLL-SCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRK 280
++ V Y+H D+ HL+ LL R+K++VTD +FSMDGD AP+ +LV L +
Sbjct: 119 LSG----ARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAER 174
Query: 281 YGFLLVLDDAHGTFVCGKNGGGVAEQFN-CERDVDICVGTLSKAAGCQGGFIAC 333
YG L++DDAHGT V G++G G E F VDI VGTLSKA G G ++A
Sbjct: 175 YGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYGAYVAG 228
|
7-keto-8-aminopelargonic acid synthetase is an alternate name. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 360 |
| >gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Score = 194 bits (496), Expect = 4e-59
Identities = 92/236 (38%), Positives = 121/236 (51%), Gaps = 30/236 (12%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K ++ F N+YLGL++HP + AA HG G ICG + H+ LE LA
Sbjct: 42 KEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLG 101
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRI-- 222
ED +L + F AN + L G E AI SDALNHASIIDG+R+
Sbjct: 102 TEDAILYSSCFDANGGLF-------ETLLGKED-------AIISDALNHASIIDGVRLCK 147
Query: 223 AERTKMVEVFVYKHCDMSHLKTLL---SCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRR 279
A+R + Y + DM+ L+ L R K++ TD +FSMDGD AP+ E+ L
Sbjct: 148 AKR------YRYANNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLAD 201
Query: 280 KYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKA-AGCQGGFIACR 334
KY L+++DD+H G+NG G E F VDI GTL KA G GG+ A R
Sbjct: 202 KYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGR 257
|
Length = 397 |
| >gnl|CDD|236370 PRK09064, PRK09064, 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 7e-56
Identities = 86/229 (37%), Positives = 126/229 (55%), Gaps = 21/229 (9%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKA----AARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
+ + ++ NDYLG+ HP + +A R G G G+ I G +YH LE LADL
Sbjct: 46 REVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG 105
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
KE L+ +G+ +N A + +A L+ IFSD LNHAS+I+GIR +
Sbjct: 106 KEAALVFTSGYVSNDATL---STLAKLIPD---------CVIFSDELNHASMIEGIRRSR 153
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTM-RKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
K +++H D++HL+ LL+ R K++ +S++SMDGD AP+ E+ L KY
Sbjct: 154 CEK----HIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNA 209
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
L LD+ H + G GGG+AE+ +DI GTL+KA G GG+IA
Sbjct: 210 LTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMGGYIA 258
|
Length = 407 |
| >gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 1e-55
Identities = 96/229 (41%), Positives = 128/229 (55%), Gaps = 23/229 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAAR----HGMGPRGSALICGYTNYHRLLESCLADLKK 164
K ++ S N+YLG + HP + +AAA+ +G+G I G H LE LA KK
Sbjct: 33 KEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKK 92
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
E L+ +GF N V+ A+ L GD + SD LNHASIIDG+R+ +
Sbjct: 93 TEAALVFQSGFNTNQGVLSAL-----LRKGD---------IVLSDELNHASIIDGLRLTK 138
Query: 225 RTKMVEVFVYKHCDMSHLKTLL-SCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
TK + YKH DM L +L + KK++VTD +FSMDGD AP+ E+V+L +YG
Sbjct: 139 ATKKI----YKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGA 194
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
+ +DDAHG+ V G+ G G F E VDI VGTLSKA G GG+ A
Sbjct: 195 VTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVGGYAA 243
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. Length = 385 |
| >gnl|CDD|233587 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 8e-53
Identities = 86/229 (37%), Positives = 127/229 (55%), Gaps = 21/229 (9%)
Query: 109 KRLLLFSGNDYLGLSSHPTIA----KAAARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K + ++ NDYLG+ HP + + ++G G G+ I G H LE+ LADL
Sbjct: 45 KDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHG 104
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
KE L+ +G+ AN A + +A ++ G IFSD LNHAS+I+GIR +
Sbjct: 105 KESALVFTSGYVANDATL---ATLAKIIPG---------CVIFSDELNHASMIEGIRHSG 152
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTMRK-KVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
E F+++H D++HL+ LL + K++ +S++SMDGD AP+ E+ L KYG
Sbjct: 153 ----AEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGA 208
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
L LD+ H + G GGG+AE+ +DI GTL+KA G GG+IA
Sbjct: 209 LTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVGGYIA 257
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 402 |
| >gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 1e-47
Identities = 95/264 (35%), Positives = 126/264 (47%), Gaps = 34/264 (12%)
Query: 87 ENEIICGDGLANDKTITFARQFKRL--------LLFSGNDYLGLSSHPTIAKAAAR---- 134
E E I GL + I + Q + L F N+YLGLSSHP + +AA
Sbjct: 8 ELESIREAGLFKSERIITSPQGADIRVADGREVLNFCANNYLGLSSHPDLIQAAKDALDE 67
Query: 135 HGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAG 194
HG G ICG + H+ LE+ +A ED +L + F AN G + L G
Sbjct: 68 HGFGMSSVRFICGTQDIHKELEAKIAAFLGTEDTILYASCFDAN-------GGLFETLLG 120
Query: 195 DEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCC---TM 251
E AI SDALNHASIIDG+R+ + + + Y + DM+ L+ L
Sbjct: 121 AED-------AIISDALNHASIIDGVRLCKAKR----YRYANNDMADLEAQLKEARAAGA 169
Query: 252 RKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCER 311
R +++ TD +FSMDG AP+ E+ L KY L+++D+ H T G G G E
Sbjct: 170 RHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMG 229
Query: 312 DVDICVGTLSKA-AGCQGGFIACR 334
VDI GTL KA G GGF R
Sbjct: 230 RVDIITGTLGKALGGASGGFTTAR 253
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function [Energy metabolism, Amino acids and amines]. Length = 393 |
| >gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 2e-46
Identities = 87/229 (37%), Positives = 127/229 (55%), Gaps = 21/229 (9%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKA----AARHGMGPRGSALICGYTNYHRLLESCLADLKK 164
+R+ ++ NDYLG+ HP + A R+G G G+ I G ++ H LLE LADL
Sbjct: 46 RRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHG 105
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
KE LL +G+ +N A A+ + LL G I SDALNHAS+I+GIR +
Sbjct: 106 KESALLFTSGYVSNDA---ALSTLGKLLPG---------CVILSDALNHASMIEGIRRSG 153
Query: 225 RTKMVEVFVYKHCDMSHLKTLL-SCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
K V ++H D++ L+ L S R K++ +S++SMDGD AP+ + L +Y
Sbjct: 154 AEKQV----FRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNA 209
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
L +D+ H + G GGG+AE+ +D+ GTL+KA GC GG+IA
Sbjct: 210 LTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLGGYIA 258
|
Length = 410 |
| >gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 3e-46
Identities = 84/221 (38%), Positives = 118/221 (53%), Gaps = 21/221 (9%)
Query: 117 NDYLGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCP 172
NDYLG+ HP + A G G G+ I G +YH LLE+ LADL KE LL
Sbjct: 53 NDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFT 112
Query: 173 TGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVF 232
+G+ +N A A+ + S L G I SD LNHAS+I+GIR + K
Sbjct: 113 SGYVSNWA---ALSTLGSRLPG---------CVILSDELNHASMIEGIRHSRAEK----R 156
Query: 233 VYKHCDMSHLKTLLSCC-TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAH 291
+++H D + L+ LS R K+V +S++SMDGD AP+ E+ + K+G + LD+ H
Sbjct: 157 IFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVH 216
Query: 292 GTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIA 332
+ G GGG+AE+ + I GTL+KA G GG+I
Sbjct: 217 AVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMGGYIT 257
|
Length = 406 |
| >gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 8e-30
Identities = 63/230 (27%), Positives = 103/230 (44%), Gaps = 32/230 (13%)
Query: 112 LLFSGNDYLGLSSHPTIAKAAAR----HGMGPRGSALICGYTNYHRLLESCLADLKKKED 167
++ NDYL LS HP I KA G SA+ + E LA E
Sbjct: 57 IILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFES 116
Query: 168 CLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK 227
CLLC +G+AAN+ ++ + D ++ D H S+ +G+R A +
Sbjct: 117 CLLCQSGWAANVGLLQTIA--------------DPNTPVYIDFFAHMSLWEGVRAA-GAQ 161
Query: 228 MVEVFVYKHCDMSHLKTLLSCCTMR--KKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLL 285
++H D+ HL+ + R ++V DS++S G AP+ ++V + ++G +L
Sbjct: 162 AHP---FRHNDVDHLRRQIE----RHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVL 214
Query: 286 VLDDAH--GTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
V+D++H GT G G G+ + V +L+KA + G I C
Sbjct: 215 VVDESHSLGTH--GPQGAGLVAELGLTSRVHFITASLAKAFAGRAGIITC 262
|
Length = 407 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 6e-28
Identities = 62/234 (26%), Positives = 92/234 (39%), Gaps = 18/234 (7%)
Query: 111 LLLFSGNDYLGLSSHPT-IAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCL 169
+ N+YLG S +AKA G G+ + G T+ L LA + L
Sbjct: 3 KINLGSNEYLGDSGTLPAVAKAEKDALAG--GTRNLYGPTDGLPELREALAKFLGRSPVL 60
Query: 170 LCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMV 229
AV+ G A++ A + AI A + S I R+A ++V
Sbjct: 61 K----LDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLA-GGEVV 115
Query: 230 EVFVYK----HCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLR---RKYG 282
+Y H D L+ L T KVV+ S + G A + EL KL +++
Sbjct: 116 RYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHN 175
Query: 283 FLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIAC 333
LL++D+A+ FV G E + VG+ SKA G G G+I
Sbjct: 176 ILLLVDEAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILG 229
|
Length = 357 |
| >gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 7e-25
Identities = 76/254 (29%), Positives = 119/254 (46%), Gaps = 36/254 (14%)
Query: 97 ANDKTITFARQFK--RLLLFSGNDYLGLSSH-----PTIAKAAARHGMGPRGSALICGYT 149
+ND T R K R L +YLG ++ P + ++ ++ S + G T
Sbjct: 86 SNDNNKTLKRTTKTRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTT 145
Query: 150 NYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSD 209
HR LE +A K ++ G+A N +I A+ L I SD
Sbjct: 146 KLHRELEELVARFVGKPAAIVFGMGYATNSTIIPALIGKGGL--------------IISD 191
Query: 210 ALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLL-------SCCTMR---KKVVVTD 259
+LNH SI++G R + T + V++H SHL+ +L T R K +V+ +
Sbjct: 192 SLNHNSIVNGARGSGAT----IRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVE 247
Query: 260 SLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVG 318
++SM+G+ + E+V + +KY + LD+AH GK G GV E + DVDI +G
Sbjct: 248 GIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMG 307
Query: 319 TLSKAAGCQGGFIA 332
T +K+ G GG+IA
Sbjct: 308 TFTKSFGSCGGYIA 321
|
Length = 489 |
| >gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 7e-21
Identities = 84/292 (28%), Positives = 127/292 (43%), Gaps = 43/292 (14%)
Query: 57 MQHWDRN-AVQISISDSTFQRWLHDVPSSGDE--NEIICGDGLANDKTITFARQFKRLLL 113
MQH RN +I+ ++ + + DE N + G+ T+ F +
Sbjct: 1 MQHKYRNNKKRINRAEKFWDA-------AYDEGLNGLTVGEREGILITLADGHTF---VN 50
Query: 114 FSGNDYLGLSSHPTIAKAAARHGMGPRGSALICG-----YTNYHRLLESCLADLKKKEDC 168
F YLGL +HP I + A + GS + + + LE L++L
Sbjct: 51 FVSCSYLGLDTHPAIIEGAVD-ALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGAS-V 108
Query: 169 LLCPTGFAANMAVI--VAVGNIASLLAGDEKSFKDEKIAIFSDALNHAS--IIDGIRIAE 224
L + AA++ ++ +A G L G +F D HAS I+ GI A+
Sbjct: 109 LTFTSCSAAHLGILPLLASG----HLTGGVPP-----HMVF-DKNAHASLNILKGI-CAD 157
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFL 284
T EV H D+ L+ + C T + V D ++SM G AP+ EL++L+ KYG
Sbjct: 158 ET---EVETIDHNDLDALEDI--CKTNKTVAYVADGVYSM-GGIAPVKELLRLQEKYGLF 211
Query: 285 LVLDDAHGTFVCGKNGGG-VAEQFNCERDVD-ICVGTLSKAAGCQGGFIACR 334
L +DDAHG + GKNG G V + + + I +L KA G GG I
Sbjct: 212 LYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASGGVIMLG 263
|
Length = 402 |
| >gnl|CDD|178766 PLN03227, PLN03227, serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 87.3 bits (216), Expect = 3e-19
Identities = 58/241 (24%), Positives = 100/241 (41%), Gaps = 41/241 (17%)
Query: 112 LLFSGNDYLGLSSHPTIAKAAA----RHGMG---PRGSALICGYTNYHRLLESCLADLKK 164
L F+ +D+L SS PT+ + A +G G PRG G + H LE C+A+
Sbjct: 1 LNFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRG---FYGTIDAHLELEQCMAEFLG 57
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
E +L G + + + A LL D + +++ G+ ++
Sbjct: 58 TESAILYSDGASTTSSTVAAFAKRGDLLVVDRGVNE--------------ALLVGVSLSR 103
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCC-----------TMRKKVVVTDSLFSMDGDFAPMVE 273
V ++H DM L+ +L T +++ +V + L+ G AP+ E
Sbjct: 104 ----ANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKE 159
Query: 274 LVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE--RDVDICVGTLSKAAGCQGGFI 331
LV L+ ++ + L+LD++ GK+G G E + +I +L A G GG
Sbjct: 160 LVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVGGMT 219
Query: 332 A 332
Sbjct: 220 V 220
|
Length = 392 |
| >gnl|CDD|178417 PLN02822, PLN02822, serine palmitoyltransferase | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 5e-17
Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 36/237 (15%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAK----AAARHGMG---PRGSALICGYTNYHRLLESCLAD 161
K ++ F+ +YLGL + I + A ++G+G PRG G + H E+ +A
Sbjct: 109 KDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRG---FYGTIDVHLDCETKIAK 165
Query: 162 LKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIR 221
D +L G + +VI A GD I +D H I +G+
Sbjct: 166 FLGTPDSILYSYGLSTIFSVIPAFCK-----KGD---------IIVADEGVHWGIQNGLY 211
Query: 222 IAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKK-------VVVTDSLFSMDGDFAPMVEL 274
++ T + +KH DM L+ L T K +V ++++ G AP+ E+
Sbjct: 212 LSRST----IVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEI 267
Query: 275 VKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERD-VDICVGTLSKAAGCQGGF 330
V+L+ KY F ++LD+++ V GK+G G++E F + +DI + A +GGF
Sbjct: 268 VRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEGGF 324
|
Length = 481 |
| >gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 7e-17
Identities = 56/235 (23%), Positives = 99/235 (42%), Gaps = 35/235 (14%)
Query: 114 FSGNDYLGLSSHPTIAKAAAR----------HG-MGPRGSALICGYTNYHRLLESCLADL 162
F ND+LG S T+ + H +G GS I G ++ LE +A
Sbjct: 9 FVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHF 68
Query: 163 KKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIR- 221
+ + P+G+ AN+ + + ++ + DE+ H S++ +
Sbjct: 69 HGAPEAFIVPSGYMANLGLCAHLSSVTDYVLWDEQV--------------HISVVYSLSV 114
Query: 222 IAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKK---VVVTDSLFSMDGDFAPMVELVKLR 278
I+ + ++H D+ HL++LL C R + S++S G AP+ +++ L
Sbjct: 115 ISGWHQ-----SFRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALS 169
Query: 279 RKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
+KY L++D+AH + G +G G E + V T SKA G G +
Sbjct: 170 KKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLV-TYSKALGSMGAALLS 223
|
Length = 370 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 6e-04
Identities = 40/191 (20%), Positives = 64/191 (33%), Gaps = 40/191 (20%)
Query: 155 LESCLADL--KKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALN 212
LE LA L + + P+G AN A ++A+ GDE + DA
Sbjct: 5 LEEKLARLLQPGNDKAVFVPSGTGANEAALLALLG-----PGDE---------VIVDANG 50
Query: 213 HASIIDGIRIAERTKMVEVFVYK----------HCDMSHLKTLLSCCTMRKKVVVTDSLF 262
H S +A + + LK ++V
Sbjct: 51 HGSRY---WVAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKP-----NVALIVITPNT 102
Query: 263 SMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSK 322
+ G P+ E+ K+ ++YG LL++D A G + E D+ +L K
Sbjct: 103 TSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGG-----ADVVTFSLHK 157
Query: 323 A-AGCQGGFIA 332
G GG +
Sbjct: 158 NLGGEGGGVVI 168
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 334 | |||
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 100.0 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 100.0 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 100.0 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 100.0 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 100.0 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 100.0 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 100.0 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 100.0 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 100.0 | |
| PLN02822 | 481 | serine palmitoyltransferase | 100.0 | |
| PLN02483 | 489 | serine palmitoyltransferase | 100.0 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 100.0 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 100.0 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 100.0 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 100.0 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 100.0 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 100.0 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.97 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.97 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.97 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.97 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.96 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.95 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.95 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.95 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.94 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.94 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.93 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.93 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.93 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.92 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.92 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.92 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.92 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.92 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.91 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.91 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.91 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.91 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.9 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.9 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.9 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.9 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.9 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.89 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.89 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.89 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.88 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.88 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.88 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.88 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.87 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.87 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.87 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.86 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.86 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.86 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.86 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.86 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.86 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.86 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.86 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.86 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.86 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.86 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.86 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.85 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.85 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.85 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.85 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.85 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.85 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.85 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.85 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.85 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.84 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.84 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.84 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.84 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.84 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.84 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.84 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.84 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.84 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.84 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.84 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.84 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.83 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.83 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.83 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.83 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.83 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.83 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.83 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.83 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.83 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.82 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.82 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.82 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.82 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.82 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.82 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.82 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.82 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.82 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.82 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.82 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.82 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.82 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.82 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.82 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.82 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.82 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.82 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.82 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.81 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.81 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.81 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.81 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.81 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.81 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.81 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.81 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.81 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.81 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.81 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.81 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.8 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.8 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.8 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.8 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.8 | |
| PLN02721 | 353 | threonine aldolase | 99.8 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.8 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.8 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.8 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.8 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.8 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.8 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.8 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.8 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.8 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.79 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.79 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.79 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.79 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.79 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.79 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.79 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.79 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.79 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.79 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.79 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.79 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.79 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.78 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.78 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.78 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.78 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.78 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.78 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.78 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.78 | |
| PRK07324 | 373 | transaminase; Validated | 99.78 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.78 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.78 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.78 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.78 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.78 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.78 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.77 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.77 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.77 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.77 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.77 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.77 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.77 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.77 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.77 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.77 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.77 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.77 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.77 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.77 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.77 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.77 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.77 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.76 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.76 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.76 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.76 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.76 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.76 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.76 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.76 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.76 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.76 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.76 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.76 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.76 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.75 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.75 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.75 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.75 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.75 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.75 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.75 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.75 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.75 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.75 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.75 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.74 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.74 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.74 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.74 | |
| PLN02656 | 409 | tyrosine transaminase | 99.74 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.74 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.74 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.74 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.74 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.74 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.73 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.73 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.73 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.73 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.73 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.73 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.73 | |
| PLN02187 | 462 | rooty/superroot1 | 99.73 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.72 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.72 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.72 | |
| PLN02651 | 364 | cysteine desulfurase | 99.72 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.72 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.72 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.72 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.72 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.72 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.71 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.71 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.71 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.71 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.71 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.71 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.7 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.7 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.7 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.7 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.7 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.7 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.7 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.7 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.7 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.69 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.69 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.69 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.69 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.69 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.69 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.69 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.68 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.68 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.68 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.68 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.68 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.68 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.68 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.68 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.68 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.67 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.67 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.66 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.66 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.66 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.66 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.66 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.66 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.66 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.66 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.66 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.65 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.65 | |
| PLN02368 | 407 | alanine transaminase | 99.65 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.65 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.64 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.64 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.64 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.64 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.64 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.64 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.63 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.63 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.63 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.63 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.63 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.63 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.62 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.62 | |
| PLN02397 | 423 | aspartate transaminase | 99.62 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.6 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.6 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.6 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.6 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.59 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.59 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.59 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.58 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.58 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.57 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.57 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.57 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.57 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.57 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.56 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.56 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.55 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.54 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.54 | |
| PLN02231 | 534 | alanine transaminase | 99.54 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.53 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.53 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.53 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.52 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.51 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.5 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.49 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.48 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.48 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.48 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.45 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.44 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.41 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.4 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.4 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.38 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.35 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.34 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.34 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.34 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.31 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.28 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.28 | |
| PLN02263 | 470 | serine decarboxylase | 99.27 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.27 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 99.26 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.22 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.13 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.13 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.1 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.1 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.09 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.07 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.06 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.04 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.03 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 99.0 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.86 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 98.85 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 98.84 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 98.8 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 98.76 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.75 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 98.74 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 98.69 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 98.64 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 98.59 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.58 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.37 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 98.36 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.29 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.29 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.25 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 98.23 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 98.11 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 98.08 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.07 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.06 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 97.92 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 97.78 | |
| PLN02452 | 365 | phosphoserine transaminase | 97.76 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 97.62 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.57 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.48 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 96.81 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 96.69 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 96.66 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 96.45 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 94.1 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 94.07 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 93.92 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 92.31 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 91.7 |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-64 Score=494.69 Aligned_cols=324 Identities=70% Similarity=1.213 Sum_probs=281.4
Q ss_pred hhHHHHHHHHHHHHHHccccccccccccCCCCccccccCCCCCCCCcchhcccccccccceeeeechhhhhhhhcccCCC
Q 019931 5 SLWDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQISISDSTFQRWLHDVPSS 84 (334)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (334)
-+||.|+|++|..|+...++|++|||.+.+.+.+.-.....+++.++++|++++||++.+|++++++.+|++|+.+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (476)
T PLN02955 4 HSWDKWVEEAVNVLESRQILRSLRPICMSRQNEEEIVKSRANGGDDYEVFDGLCQWDRTSVEVSVSIPTFQKWLHDIPSN 83 (476)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCccCCCCCCCccchhhcccCCchhhccCCCcccccceEEEechhhHHHHHHHHhcc
Confidence 36999999999999999999999999988776443345557889999999999999999999999999999999998888
Q ss_pred CCCcceeecCCCCCcccchhcccceeEEEeecCccCCCCCCHHHHH----HHHHhcCCCCccccccCchHHHHHHHHHHH
Q 019931 85 GDENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAK----AAARHGMGPRGSALICGYTNYHRLLESCLA 160 (334)
Q Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~g~~~l~f~sn~yLgl~~~p~v~~----a~~~~g~g~~~sr~~~G~~~~~~~LE~~La 160 (334)
|... .+.+.+.+.+. ..+|+++||+|||||||++||++++ ++++||.|+++||+++|++.+|++||++||
T Consensus 84 ~~~~--~~~~~~~~~~~----~~~r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA 157 (476)
T PLN02955 84 GEEI--FSGDALAEERK----GRFKKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLA 157 (476)
T ss_pred cccc--cCCCCcccccc----CCCceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHH
Confidence 7431 22222222222 3558999999999999999999998 567899999999999999999999999999
Q ss_pred hHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHH
Q 019931 161 DLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMS 240 (334)
Q Consensus 161 ~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~ 240 (334)
+|+|.|.+++|+||+.||++++.+|+....++...+.+..+++++|++|+++|+|+++|+++++...+++++.|+|||++
T Consensus 158 ~f~g~e~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HND~~ 237 (476)
T PLN02955 158 DLKKKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDMY 237 (476)
T ss_pred HHHCCCcEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCCCHH
Confidence 99999999999999999999999985322111112223335688999999999999999999854335789999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecC
Q 019931 241 HLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTL 320 (334)
Q Consensus 241 ~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sl 320 (334)
+|+++|+.++.++++|++|++|||+|+++||++|.++|++||++||+||||++|++|++|+|.++++++.+++||+++||
T Consensus 238 ~Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TL 317 (476)
T PLN02955 238 HLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTL 317 (476)
T ss_pred HHHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeC
Confidence 99999987665678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccEEeeC
Q 019931 321 SKAAGCQGGFIACR 334 (334)
Q Consensus 321 sKa~G~~GG~i~~~ 334 (334)
||+||+.||||+|+
T Consensus 318 sKA~G~~GGfi~gs 331 (476)
T PLN02955 318 SKAAGCHGGFIACS 331 (476)
T ss_pred ccchhccCceeecH
Confidence 99999999999985
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-55 Score=426.63 Aligned_cols=246 Identities=46% Similarity=0.684 Sum_probs=223.8
Q ss_pred hhHHHHHHHHHHHHHHccccccccccccCCCCccccccCCCCCCCCcchhcccccccccceeeeechhhhhhhhcccCCC
Q 019931 5 SLWDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQISISDSTFQRWLHDVPSS 84 (334)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (334)
|.|..|++++|+.+++.+++|.++.+...+.. |+.. +
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~----------------------------------------~~~~---~ 37 (388)
T COG0156 1 MDFLSFLRQALQALKAEGLYRGLRALDRRQGL----------------------------------------AIRA---D 37 (388)
T ss_pred CchHHHHHHHHHHHHhhccccchhhccccCCc----------------------------------------ceec---C
Confidence 35778999999999999999999887643221 1010 2
Q ss_pred CCCcceeecCCCCCcccchhcccceeEEEeecCccCCCCCCHHHHH----HHHHhcCCCCccccccCchHHHHHHHHHHH
Q 019931 85 GDENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAK----AAARHGMGPRGSALICGYTNYHRLLESCLA 160 (334)
Q Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~g~~~l~f~sn~yLgl~~~p~v~~----a~~~~g~g~~~sr~~~G~~~~~~~LE~~La 160 (334)
|++++||||||||||++||++++ ++++||.|.+++|+++|+.+.|.+||++||
T Consensus 38 -----------------------~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA 94 (388)
T COG0156 38 -----------------------GRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELA 94 (388)
T ss_pred -----------------------CceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHH
Confidence 38999999999999999999998 456899999999999999999999999999
Q ss_pred hHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHH
Q 019931 161 DLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMS 240 (334)
Q Consensus 161 ~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~ 240 (334)
+|+|.|.+++|+||+.||.+++.+++++ +|+|++|+++|+|+++|++++ ++++++|+|||++
T Consensus 95 ~f~g~e~al~f~SGy~AN~~~i~~l~~~--------------~dli~~D~lnHASiidG~rls----~a~~~~f~HnD~~ 156 (388)
T COG0156 95 DFLGAEAALLFSSGFVANLGLLSALLKK--------------GDLIFSDELNHASIIDGIRLS----RAEVRRFKHNDLD 156 (388)
T ss_pred HHhCCCcEEEEcccchhHHHHHHHhcCC--------------CcEEEEechhhhhHHHHHHhC----CCcEEEecCCCHH
Confidence 9999999999999999999999999875 899999999999999999999 8999999999999
Q ss_pred HHHHHHhcCC---CCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEE
Q 019931 241 HLKTLLSCCT---MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDIC 316 (334)
Q Consensus 241 ~Le~~l~~~~---~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div 316 (334)
+||++|++.. .++++|++|++|||+|+++||++|++||+||+++|+|||||++|++|++|+|+++++|+. .++||+
T Consensus 157 ~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~ 236 (388)
T COG0156 157 HLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDII 236 (388)
T ss_pred HHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEE
Confidence 9999998732 147899999999999999999999999999999999999999999999999999999998 556999
Q ss_pred EecCcccccCCccEEeeC
Q 019931 317 VGTLSKAAGCQGGFIACR 334 (334)
Q Consensus 317 ~~SlsKa~G~~GG~i~~~ 334 (334)
++||||+||+.||||+|+
T Consensus 237 ~gTlsKAlGs~Gg~v~g~ 254 (388)
T COG0156 237 VGTLGKALGSSGGYIAGS 254 (388)
T ss_pred EEEchhhhcccCceeeCc
Confidence 999999999999999985
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=368.91 Aligned_cols=263 Identities=43% Similarity=0.685 Sum_probs=228.3
Q ss_pred cccccccccccCCCCccccccCCCCCCCCcchhcccccccccceeeeechhhhhhhhcccCCCCCCcceeecCCCCCccc
Q 019931 22 KVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQISISDSTFQRWLHDVPSSGDENEIICGDGLANDKT 101 (334)
Q Consensus 22 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 101 (334)
...|++||++..-..+.+-...-.+-+++.+.|++.+.|++..|+...+-.+++. .|.
T Consensus 8 ~~~~slrpi~m~R~~q~~~~q~r~~l~~~legi~gagtwk~erVi~s~q~p~i~v-------~G~--------------- 65 (417)
T KOG1359|consen 8 QILRSLRPICMSRQAQEAIAQLRAILGDELEGIKGAGTWKRERVITSRQGPTIQV-------KGS--------------- 65 (417)
T ss_pred HHHHHhCccccchhhHHHHHHHHHhccCccceecccccceeeeEEeecccceEEE-------ecc---------------
Confidence 4567888877643321111111246778899999999999999877553333332 331
Q ss_pred chhcccceeEEEeecCccCCCCCCHHHHH----HHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHH
Q 019931 102 ITFARQFKRLLLFSGNDYLGLSSHPTIAK----AAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAA 177 (334)
Q Consensus 102 ~~~~~~g~~~l~f~sn~yLgl~~~p~v~~----a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~A 177 (334)
.+++||||.||||||+.||+|++ |+++||.|..+.|+++|+..+|..||.+||+|.+.|++++++|++.|
T Consensus 66 ------~k~ilnFcaNnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~rED~ilypscfdA 139 (417)
T KOG1359|consen 66 ------DKKILNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHGREDTILYPSCFDA 139 (417)
T ss_pred ------ccceeeecccccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhCCCceEEecccccc
Confidence 18899999999999999999999 56789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhc-CCCCcEEE
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSC-CTMRKKVV 256 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~-~~~~~~lV 256 (334)
|++++.++.++ .|.|++|++||+|+++|+++++ +|.|-|+-+||..+.+ ++.+.++|
T Consensus 140 Nag~feail~p--------------edAvfSDeLNhASIIdGirLck--------ry~h~dv~~l~~~l~~a~k~r~klv 197 (417)
T KOG1359|consen 140 NAGAFEAILTP--------------EDAVFSDELNHASIIDGIRLCK--------RYRHVDVFDLEHCLISACKMRLKLV 197 (417)
T ss_pred chHHHHHhcCh--------------hhhhhccccccchhhhhhHHHh--------hhccchhHHHHHHHHHhhhheEEEE
Confidence 99999999876 7899999999999999999983 6889999999977764 45578999
Q ss_pred EEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc-CCccEEeeC
Q 019931 257 VTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG-CQGGFIACR 334 (334)
Q Consensus 257 v~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G-~~GG~i~~~ 334 (334)
+++++|||||+++||++|.+|++|||++|++||+|++|++|++|+|..+.+++..++||+.+||+|++| +.|||++|+
T Consensus 198 ~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~GGyttgp 276 (417)
T KOG1359|consen 198 VTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGP 276 (417)
T ss_pred EecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCCCCccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 689999885
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=342.32 Aligned_cols=210 Identities=40% Similarity=0.656 Sum_probs=197.9
Q ss_pred eeEEEeecCccCCCCCCHHHHHHH----HHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVA 184 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~----~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~a 184 (334)
+++--||||||||++.||+|.+|+ ++||.|.+|.|.+.|++..|.+||++||++.++|.+|+|+|++-||..++.+
T Consensus 171 k~VtVWCSNDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLft 250 (570)
T KOG1360|consen 171 KKVTVWCSNDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLFT 250 (570)
T ss_pred CceEEEecCccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchHHHH
Confidence 677789999999999999999965 5799999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCC-CCcEEEEEcCCCC
Q 019931 185 VGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCT-MRKKVVVTDSLFS 263 (334)
Q Consensus 185 l~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~-~~~~lVv~e~v~n 263 (334)
|.+. + +|.+|++|+.||+|++.|++.+ +..-..|+|||+++||++|+..+ .-+|+|.+|+|+|
T Consensus 251 Lak~---l---------pgcei~SD~gNHASMI~GIrns----~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhS 314 (570)
T KOG1360|consen 251 LAKK---L---------PGCEIFSDEGNHASMIQGIRNS----RVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHS 314 (570)
T ss_pred HHHH---C---------CCcEEeccccchHHHHHHhhhc----CCcceeeccCCHHHHHHHHHhCCCCCCceEEEeeeec
Confidence 9875 2 4899999999999999999988 77778999999999999998764 3579999999999
Q ss_pred CCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCccEEeeC
Q 019931 264 MDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334 (334)
Q Consensus 264 ~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~GG~i~~~ 334 (334)
|+|.++||++|++++++||++.++||+|+.|+||+.|.|+.++.|+.+.+||+.|||+|+||+.||||+++
T Consensus 315 M~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVGGYIAat 385 (570)
T KOG1360|consen 315 MDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVGGYIAAT 385 (570)
T ss_pred cCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhcccccceehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999863
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=327.81 Aligned_cols=254 Identities=33% Similarity=0.540 Sum_probs=215.4
Q ss_pred hhHHHHHHHHHHHHHHccccccccccccCCCCccccccCCCCCCCCcchhcccccccccceeeeechhhhhhhhcccCCC
Q 019931 5 SLWDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQISISDSTFQRWLHDVPSS 84 (334)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (334)
|.|.++++++|+.+++++++|.+++++..++. + +.+.+ .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~----~~~~~--------------~ 39 (406)
T PRK13393 1 MNYEQYFQRQLDGLRREGRYRVFADLERQAGA-----------------------F----PRATH--------------H 39 (406)
T ss_pred CChHHHHHHHHHHHHHcCCCceeeeccccCCC-----------------------c----ceeEE--------------e
Confidence 46788999999999999999999887643221 0 00000 0
Q ss_pred CCCcceeecCCCCCcccchhcccceeEEEeecCccCCCCCCHHHHHHH----HHhcCCCCccccccCchHHHHHHHHHHH
Q 019931 85 GDENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCLA 160 (334)
Q Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~g~~~l~f~sn~yLgl~~~p~v~~a~----~~~g~g~~~sr~~~G~~~~~~~LE~~La 160 (334)
+ ..++++++||+|||||||++||+|++++ ++|+.+++++|..+|+.+.+.+||++|+
T Consensus 40 ~-------------------~~~~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la 100 (406)
T PRK13393 40 G-------------------PDGPREVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELA 100 (406)
T ss_pred c-------------------cCCCccEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHH
Confidence 0 0113889999999999999999999955 4578888889999998889999999999
Q ss_pred hHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHH
Q 019931 161 DLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMS 240 (334)
Q Consensus 161 ~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~ 240 (334)
+++|.+.+++|+||++||..++.++... .++++|+++..+|+++..++++. +.+++.++|+|++
T Consensus 101 ~~~g~~~~~~~~SG~~An~~ai~~l~~~------------~~g~~I~~~~~~H~s~~~~~~~~----g~~~~~~~~~d~~ 164 (406)
T PRK13393 101 DLHGKEAALLFTSGYVSNWAALSTLGSR------------LPGCVILSDELNHASMIEGIRHS----RAEKRIFRHNDPA 164 (406)
T ss_pred HHhCCCcEEEeCCcHHHHHHHHHHhhcC------------CCCCEEEEccchhHHHHHHHHHc----CCeEEEeCCCCHH
Confidence 9999999999999999999999987652 13789999999999999999876 7788889999999
Q ss_pred HHHHHHhcCC-CCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEec
Q 019931 241 HLKTLLSCCT-MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGT 319 (334)
Q Consensus 241 ~Le~~l~~~~-~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~S 319 (334)
+++++++... +++++|++++++|++|.+.|+++|.++|++||++||+||+|+.|++|++|.|+.+++++.+++||+++|
T Consensus 165 ~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~t 244 (406)
T PRK13393 165 DLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGT 244 (406)
T ss_pred HHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEe
Confidence 9999987542 357899999999999999999999999999999999999999999999999887777777767899999
Q ss_pred CcccccCCccEEeeC
Q 019931 320 LSKAAGCQGGFIACR 334 (334)
Q Consensus 320 lsKa~G~~GG~i~~~ 334 (334)
|||+||+.|||++++
T Consensus 245 lsKa~g~~GG~~~~~ 259 (406)
T PRK13393 245 LAKAFGVMGGYITGS 259 (406)
T ss_pred CchhhcccCceeeCC
Confidence 999999999999864
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=326.59 Aligned_cols=211 Identities=41% Similarity=0.667 Sum_probs=189.0
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHH----HHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIV 183 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~----~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~ 183 (334)
|++++||+|||||||++||+|++|+ ++|+.+++++|+.+|+++.+.+||++|++++|.+.+++++||++||..++.
T Consensus 44 ~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~ 123 (402)
T TIGR01821 44 AKDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDATLA 123 (402)
T ss_pred CeeEEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHH
Confidence 3899999999999999999999954 568888888999999999999999999999999999999999999999998
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCC-CcEEEEEcCCC
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTM-RKKVVVTDSLF 262 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~-~~~lVv~e~v~ 262 (334)
++... .++++|+++..+|+++..++... ++++..++|+|+++++++++...+ ++++|++++++
T Consensus 124 ~l~~~------------~~~~~v~~~~~~h~s~~~~~~~~----g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~e~~~ 187 (402)
T TIGR01821 124 TLAKI------------IPGCVIFSDELNHASMIEGIRHS----GAEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVY 187 (402)
T ss_pred HhhCC------------CCCCEEEEcchHhHHHHHHHHHc----CCeEEEECCCCHHHHHHHHHhccCCCCeEEEEcCCC
Confidence 87642 13789999999999999998876 788888999999999999975432 57899999999
Q ss_pred CCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCccEEeeC
Q 019931 263 SMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334 (334)
Q Consensus 263 n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~GG~i~~~ 334 (334)
||+|.+.|+++|.++|++||++||+||||++|++|+.|.|..+++++..++||+++||||+||+.|||++++
T Consensus 188 ~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~GG~i~~~ 259 (402)
T TIGR01821 188 SMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVGGYIAAS 259 (402)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCCceeecC
Confidence 999999999999999999999999999999999999888887777766667899999999999999998864
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=322.27 Aligned_cols=211 Identities=40% Similarity=0.666 Sum_probs=188.5
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHH----HHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIV 183 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~----~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~ 183 (334)
|++++||+||||||++.||+|++++ ++++.+++++|..+|+.+.+.+||++|++++|.+.+++++||++||..++.
T Consensus 45 ~~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai~ 124 (407)
T PRK09064 45 EREVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDATLS 124 (407)
T ss_pred CceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHH
Confidence 3899999999999999999999965 457888888999999999999999999999999999999999999999998
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCC-CCcEEEEEcCCC
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCT-MRKKVVVTDSLF 262 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~-~~~~lVv~e~v~ 262 (334)
.+... .++++|+++.++|+++..++++. ++++..++|+|+++|+++++... +++++|++++++
T Consensus 125 ~l~~~------------~~~~~i~~~~~~h~s~~~~~~~~----~~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~v~ 188 (407)
T PRK09064 125 TLAKL------------IPDCVIFSDELNHASMIEGIRRS----RCEKHIFRHNDVAHLEELLAAADPDRPKLIAFESVY 188 (407)
T ss_pred HHhCC------------CCCCEEEEeCcchHHHHHHHHHc----CCcEEEECCCCHHHHHHHHHhccCCCCeEEEEeCCC
Confidence 87641 13788999999999999999877 77788899999999999997543 367899999999
Q ss_pred CCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCccEEeeC
Q 019931 263 SMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334 (334)
Q Consensus 263 n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~GG~i~~~ 334 (334)
||+|++.|+++|.++|++||++||+||||+.|++|++|.|+.++.++..+.||+++||||+||+.|||++++
T Consensus 189 s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~GG~~~~~ 260 (407)
T PRK09064 189 SMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMGGYIAGS 260 (407)
T ss_pred CCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhccCceEecC
Confidence 999999999999999999999999999999998999998887777766667899999999999999998864
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=307.83 Aligned_cols=255 Identities=35% Similarity=0.564 Sum_probs=213.5
Q ss_pred hhhHHHHHHHHHHHHHHccccccccccccCCCCccccccCCCCCCCCcchhcccccccccceeeeechhhhhhhhcccCC
Q 019931 4 SSLWDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQISISDSTFQRWLHDVPS 83 (334)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (334)
||.+.++++..|+++++++++|.++++...++. . ..+ +.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~-~~~---------~~----- 39 (410)
T PRK13392 1 MMNYDSYFDAALAQLHQEGRYRVFADLEREAGR--------------------------F-PRA---------RD----- 39 (410)
T ss_pred CCChHHHHHHHHHHHHHcCCCccccccccccCc--------------------------c-cee---------ee-----
Confidence 677889999999999999999988876532221 0 000 00
Q ss_pred CCCCcceeecCCCCCcccchhcccceeEEEeecCccCCCCCCHHHHHHH----HHhcCCCCccccccCchHHHHHHHHHH
Q 019931 84 SGDENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCL 159 (334)
Q Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~g~~~l~f~sn~yLgl~~~p~v~~a~----~~~g~g~~~sr~~~G~~~~~~~LE~~L 159 (334)
.| ..+|+++++|+|||||||..||.+++++ .+|+.+.+++|..+|+.+.+.+||++|
T Consensus 40 ~~-------------------~~~~~~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~l 100 (410)
T PRK13392 40 HG-------------------PDGPRRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLEREL 100 (410)
T ss_pred cc-------------------cCCCceEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHH
Confidence 00 0124889999999999999999999955 457888888999999888899999999
Q ss_pred HhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCH
Q 019931 160 ADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDM 239 (334)
Q Consensus 160 a~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~ 239 (334)
++++|.+.+++|+||++||..++.++... .++++|+++..+|+++..++++. ++++..++++|+
T Consensus 101 a~~~g~~~~i~~~sG~~a~~~~i~~l~~~------------~~g~~vi~~~~~h~s~~~~~~~~----g~~~~~~~~~d~ 164 (410)
T PRK13392 101 ADLHGKESALLFTSGYVSNDAALSTLGKL------------LPGCVILSDALNHASMIEGIRRS----GAEKQVFRHNDL 164 (410)
T ss_pred HHHhCCCCEEEECcHHHHHHHHHHHHhcC------------CCCCEEEEehhhhHHHHHHHHHc----CCeEEEEeCCCH
Confidence 99999999999999999999999877641 13688999999999998888776 788888899999
Q ss_pred HHHHHHHhcCC-CCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEe
Q 019931 240 SHLKTLLSCCT-MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVG 318 (334)
Q Consensus 240 ~~Le~~l~~~~-~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~ 318 (334)
+++++.+++.. +++++|++++|+||+|.+.|+++|.++|++||++||+||+|+.|++|++|.|+.++.++..++||+++
T Consensus 165 ~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~ 244 (410)
T PRK13392 165 ADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQG 244 (410)
T ss_pred HHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEE
Confidence 99999887542 46899999999999999999999999999999999999999999899888887666666666789999
Q ss_pred cCcccccCCccEEeeC
Q 019931 319 TLSKAAGCQGGFIACR 334 (334)
Q Consensus 319 SlsKa~G~~GG~i~~~ 334 (334)
||||+||+.|||++++
T Consensus 245 tlsK~~g~~GG~~~~~ 260 (410)
T PRK13392 245 TLAKAFGCLGGYIAAS 260 (410)
T ss_pred EChHhhhcccchhhcC
Confidence 9999999999998764
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=310.11 Aligned_cols=205 Identities=26% Similarity=0.442 Sum_probs=187.3
Q ss_pred EEeecCccCCCCCCHHHHH----HHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhh
Q 019931 112 LLFSGNDYLGLSSHPTIAK----AAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGN 187 (334)
Q Consensus 112 l~f~sn~yLgl~~~p~v~~----a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~ 187 (334)
|||+|||||||++||++++ ++++||.|++++|..+|+...+.+||+++|+++|.+.+++|+||++|+.+++.++++
T Consensus 1 ~~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l~~ 80 (392)
T PLN03227 1 LNFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDGASTTSSTVAAFAK 80 (392)
T ss_pred CCCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHhCC
Confidence 5899999999999999998 557899999999999999999999999999999999999999999999999998876
Q ss_pred hhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcC-----------CCCcEEE
Q 019931 188 IASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCC-----------TMRKKVV 256 (334)
Q Consensus 188 ~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~-----------~~~~~lV 256 (334)
+ ||.|++++..|++++.+++++ +.+++.|+|+|++++++.++.. ++++++|
T Consensus 81 ~--------------GD~Vl~~~~~h~s~~~~~~l~----~~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~v 142 (392)
T PLN03227 81 R--------------GDLLVVDRGVNEALLVGVSLS----RANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFL 142 (392)
T ss_pred C--------------CCEEEEeccccHHHHHHHHHc----CCeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEE
Confidence 4 899999999999999998877 6788889999999888866532 1368899
Q ss_pred EEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC--CCccEEEecCcccccCCccEEeeC
Q 019931 257 VTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE--RDVDICVGTLSKAAGCQGGFIACR 334 (334)
Q Consensus 257 v~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~--~~~Div~~SlsKa~G~~GG~i~~~ 334 (334)
++|+++||+|.+.|+++|+++|++||++||+||+|++|.+|++|+|..+++++. .++||++.||||++|..||+++++
T Consensus 143 i~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~gg~v~~~ 222 (392)
T PLN03227 143 VVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVGGMTVGS 222 (392)
T ss_pred EEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhccCcEEecC
Confidence 999999999999999999999999999999999999999999999998998884 467999999999999999998764
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=314.48 Aligned_cols=211 Identities=27% Similarity=0.453 Sum_probs=193.0
Q ss_pred ccceeEEEeecCccCCCCCCHHHHHH----HHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHH
Q 019931 106 RQFKRLLLFSGNDYLGLSSHPTIAKA----AARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAV 181 (334)
Q Consensus 106 ~~g~~~l~f~sn~yLgl~~~p~v~~a----~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~a 181 (334)
.+|++|+||+|++|+|+.+||+|+++ +++||.|++++|.++|+.+.|.+||++|+++++.++++++++|++++.++
T Consensus 106 ~~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~~i~~s~G~~a~~sa 185 (481)
T PLN02822 106 INGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLSTIFSV 185 (481)
T ss_pred ECCceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCCCCEEEECCHHHHHHHH
Confidence 47799999999999999999999994 56789999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCC------CCc-E
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCT------MRK-K 254 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~------~~~-~ 254 (334)
+++++++ +|+|+.|..+|.++..+++++ +++++.|+|||+++++..+++.. +++ +
T Consensus 186 i~a~~~~--------------gd~Ii~d~~~H~s~~~~~~ls----~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~ 247 (481)
T PLN02822 186 IPAFCKK--------------GDIIVADEGVHWGIQNGLYLS----RSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRR 247 (481)
T ss_pred HHHhCCC--------------CCEEEEeCCccHHHHHHHHHc----CCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcE
Confidence 9988764 899999999999999999988 78999999999999998886431 233 7
Q ss_pred EEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCccEEee
Q 019931 255 VVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQGGFIAC 333 (334)
Q Consensus 255 lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~GG~i~~ 333 (334)
+|++|++++++|++.||++|+++|++||++||+||+|++|++|++|+|..+++++. .++||+++||||+||+.|||++|
T Consensus 248 ~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~GG~i~g 327 (481)
T PLN02822 248 YIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEGGFCTG 327 (481)
T ss_pred EEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCCeEEEc
Confidence 99999999999999999999999999999999999999999999999999999885 46789999999999999999987
Q ss_pred C
Q 019931 334 R 334 (334)
Q Consensus 334 ~ 334 (334)
+
T Consensus 328 ~ 328 (481)
T PLN02822 328 S 328 (481)
T ss_pred C
Confidence 5
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=307.20 Aligned_cols=209 Identities=32% Similarity=0.509 Sum_probs=188.4
Q ss_pred ceeEEEeecCccCCCCC-C----HHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSS-H----PTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVI 182 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~-~----p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai 182 (334)
++++|||+|||||||++ + |.+++++++|+.+++++|..+|+.+.+++||+++|+++|.+++++|++|+.+|..++
T Consensus 99 ~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~an~~~i 178 (489)
T PLN02483 99 TRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYATNSTII 178 (489)
T ss_pred CceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHH
Confidence 48999999999999996 4 356668889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcC----CC------C
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCC----TM------R 252 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~----~~------~ 252 (334)
.+++++ ||.|+++.++|.++..+++++ |++++.++|+|+++|++++++. .+ +
T Consensus 179 ~al~~~--------------Gd~Vi~d~~~h~s~~~~~~~~----Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~ 240 (489)
T PLN02483 179 PALIGK--------------GGLIISDSLNHNSIVNGARGS----GATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWK 240 (489)
T ss_pred HHhCCC--------------CCEEEEcchhhHHHHHHHHHc----CCeEEEEeCCCHHHHHHHHHhhhhccccccccCCc
Confidence 988765 899999999999999999887 8999999999999999888632 11 1
Q ss_pred cEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCccEE
Q 019931 253 KKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQGGFI 331 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~GG~i 331 (334)
+.+|++++++||+|+++++++|+++|++||++||+||+|+.|.+|++|+|.++++++. .++||+++||||+||+.|||+
T Consensus 241 k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~GG~i 320 (489)
T PLN02483 241 KIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCGGYI 320 (489)
T ss_pred eEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCceEE
Confidence 3488999999999999999999999999999999999999998999999988888875 467999999999999999999
Q ss_pred eeC
Q 019931 332 ACR 334 (334)
Q Consensus 332 ~~~ 334 (334)
+++
T Consensus 321 ~~~ 323 (489)
T PLN02483 321 AGS 323 (489)
T ss_pred EcC
Confidence 874
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=290.67 Aligned_cols=210 Identities=40% Similarity=0.623 Sum_probs=185.0
Q ss_pred cceeEEEeecCccCCCCCCHHHHHH----HHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHH
Q 019931 107 QFKRLLLFSGNDYLGLSSHPTIAKA----AARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVI 182 (334)
Q Consensus 107 ~g~~~l~f~sn~yLgl~~~p~v~~a----~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai 182 (334)
+|+++|||++|||||++.+|+++++ +++++.+.++++...|..+.+.+||+++|+++|.+++++|+||++||..++
T Consensus 36 ~g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~~~ 115 (393)
T TIGR01822 36 DGREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGTEDTILYASCFDANGGLF 115 (393)
T ss_pred CCceEEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHH
Confidence 4599999999999999999999984 456778888899999988999999999999999999999999999999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcC---CCCcEEEEEc
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCC---TMRKKVVVTD 259 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~---~~~~~lVv~e 259 (334)
.+++++ ||.|+++.+.|.++..++++. +.+.+.+.++|+++|++++++. +.++++|+++
T Consensus 116 ~~l~~~--------------gd~vi~~~~~~~s~~~~~~~~----~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~ 177 (393)
T TIGR01822 116 ETLLGA--------------EDAIISDALNHASIIDGVRLC----KAKRYRYANNDMADLEAQLKEARAAGARHRLIATD 177 (393)
T ss_pred HHhCCC--------------CCEEEEeccccHHHHHHHHhc----CCceEEeCCCCHHHHHHHHHhhhhcCCCceEEEEe
Confidence 888764 899999999999999998877 5666778899999999999753 1268899999
Q ss_pred CCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC-CccEEeeC
Q 019931 260 SLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC-QGGFIACR 334 (334)
Q Consensus 260 ~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~-~GG~i~~~ 334 (334)
+++|++|.+.|+++|+++|++||++||+||+|+.|++|.+|.+..+..++.+++||+++||||++++ .|||++++
T Consensus 178 ~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r~G~~~~~ 253 (393)
T TIGR01822 178 GVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGASGGFTTAR 253 (393)
T ss_pred CCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCCcEEEEeC
Confidence 9999999999999999999999999999999999988887777665566666789999999999964 68998864
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=293.70 Aligned_cols=208 Identities=34% Similarity=0.525 Sum_probs=194.7
Q ss_pred eeEEEeecCccCCCCC-----CHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSS-----HPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIV 183 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~-----~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~ 183 (334)
-+.||++|.|||||++ ++.+.+++++|+...+++|-..|+...|.++|+..|+|+|+++|++|+.|+.+|...+.
T Consensus 136 ~~~lNlgSYNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p 215 (519)
T KOG1357|consen 136 SRCLNLGSYNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVEDAIVFSMGFATNSMNIP 215 (519)
T ss_pred eeeeeecccccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCCcceEEEeccccccccCcc
Confidence 4689999999999995 58888899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcC----------CCCc
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCC----------TMRK 253 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~----------~~~~ 253 (334)
+++.+ +..|++|++||+|++.|++++ |+.++.|+|||+.+||++|++. +.++
T Consensus 216 ~l~~~--------------gsLIiSDelNHaSi~~GaRLS----gAtiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kk 277 (519)
T KOG1357|consen 216 SLLGK--------------GSLIISDELNHASLITGARLS----GATTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKK 277 (519)
T ss_pred eeecC--------------Ccceeeccccchheecccccc----CceEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchh
Confidence 98875 778999999999999999999 9999999999999999999863 1245
Q ss_pred EEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCccEEe
Q 019931 254 KVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQGGFIA 332 (334)
Q Consensus 254 ~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~GG~i~ 332 (334)
.+|+++++++|.|.+.+|+++++++|||.++|++||||+.|..|++|+|+++++++. .++||++|||+|+||+.||||+
T Consensus 278 i~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~GGyia 357 (519)
T KOG1357|consen 278 ILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAGGYIA 357 (519)
T ss_pred eeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhcccccceec
Confidence 688999999999999999999999999999999999999999999999999999997 4679999999999999999999
Q ss_pred eC
Q 019931 333 CR 334 (334)
Q Consensus 333 ~~ 334 (334)
++
T Consensus 358 gs 359 (519)
T KOG1357|consen 358 GS 359 (519)
T ss_pred Cc
Confidence 85
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=282.73 Aligned_cols=208 Identities=28% Similarity=0.523 Sum_probs=183.4
Q ss_pred cceeEEEeecCccCCCCCCHHHHHHH----HHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHH
Q 019931 107 QFKRLLLFSGNDYLGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVI 182 (334)
Q Consensus 107 ~g~~~l~f~sn~yLgl~~~p~v~~a~----~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai 182 (334)
.|+.++||+|||||||.+||+|++++ ++++.+.+.++...+..+.+.+||++|++++|.+.+++++||++||.+++
T Consensus 52 ~g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~~l 131 (407)
T PRK07179 52 PGPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLL 131 (407)
T ss_pred CCCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHH
Confidence 45889999999999999999999954 45666665556666556788999999999999999999999999999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCC
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLF 262 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~ 262 (334)
++++.+ +|.|+++...|.++..+++.. +++++.++++|+++|++++++. ++++|++++++
T Consensus 132 ~~l~~~--------------g~~v~~~~~~h~s~~~~~~~~----g~~~~~~~~~d~~~l~~~l~~~--~~~lV~v~~v~ 191 (407)
T PRK07179 132 QTIADP--------------NTPVYIDFFAHMSLWEGVRAA----GAQAHPFRHNDVDHLRRQIERH--GPGIIVVDSVY 191 (407)
T ss_pred HHhCCC--------------CCEEEEECCcCHHHHHHHHHC----CCeEEEecCCCHHHHHHHHHhc--CCeEEEECCCC
Confidence 988764 788999999999999888776 7888999999999999999752 47899999999
Q ss_pred CCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCccEEeeC
Q 019931 263 SMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334 (334)
Q Consensus 263 n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~GG~i~~~ 334 (334)
||+|.+.|+++|.++|++||++||+||+|++|.+|++|.|+..++++.+.+|++++|+||++|..+|+++++
T Consensus 192 n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~~~G~l~~~ 263 (407)
T PRK07179 192 STTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAGRAGIITCP 263 (407)
T ss_pred CCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhccCeEEEeC
Confidence 999999999999999999999999999999998999998877777776678999999999999888998864
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=278.58 Aligned_cols=206 Identities=25% Similarity=0.422 Sum_probs=178.2
Q ss_pred eeEEEeecCccCCCCCCHHHHH----HHHHh-------cCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAK----AAARH-------GMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAA 177 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~----a~~~~-------g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~A 177 (334)
.+++||+||||||++.||.+++ ++++| +.|.+++|++.|+.+.++++|++||+++|++.+++|+||++|
T Consensus 4 ~~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG~~a 83 (370)
T PRK05937 4 SLSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGYMA 83 (370)
T ss_pred CceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECChHHH
Confidence 4689999999999999999988 44567 588899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCC---CCcE
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCT---MRKK 254 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~---~~~~ 254 (334)
|..++..+.+ ++|+|++|..+|++++.++++. ....+.|+|+|+++|++++++.. ++++
T Consensus 84 ~~~~~~~~~~--------------~~d~ii~d~~~H~sv~~~~~~~----~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 145 (370)
T PRK05937 84 NLGLCAHLSS--------------VTDYVLWDEQVHISVVYSLSVI----SGWHQSFRHNDLDHLESLLESCRQRSFGRI 145 (370)
T ss_pred HHHHHHHhCC--------------CCCEEEEEhhhhHHHHHHHHHc----CCceEEecCCCHHHHHHHHHhhhccCCCcE
Confidence 9877665543 3799999999999999998876 33456789999999999997532 2467
Q ss_pred EEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCccEEee
Q 019931 255 VVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333 (334)
Q Consensus 255 lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~GG~i~~ 333 (334)
+|++++++|++|.+.|+++|.++|+++|++|++|+||+.|++|.+|.|++..++.. +.++++.||||++|+.|+.+++
T Consensus 146 ~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~-~~~~~~~tlsK~~g~~G~~vl~ 223 (370)
T PRK05937 146 FIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYE-NFYAVLVTYSKALGSMGAALLS 223 (370)
T ss_pred EEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCC-CCcEEEEechhhhhcCceEEEc
Confidence 88899999999999999999999999999999999999999999998876555543 3457789999999998877665
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=261.61 Aligned_cols=246 Identities=42% Similarity=0.621 Sum_probs=205.0
Q ss_pred hhHHHHHHHHHHHHHHccccccccccccCCCCccccccCCCCCCCCcchhcccccccccceeeeechhhhhhhhcccCCC
Q 019931 5 SLWDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQISISDSTFQRWLHDVPSS 84 (334)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (334)
|+|.++++.+|++.+..||||+++.+....+. |+.+ +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----------------------------------------~~~~---~ 37 (385)
T PRK05958 1 MSWLDRLEAALAQRRAAGLYRSLRPREGGAGR----------------------------------------WLVV---D 37 (385)
T ss_pred CcHHHHHHHHHHHHHHcCCCccccccccCCCc----------------------------------------eeEe---C
Confidence 68999999999999999999999998765443 3332 4
Q ss_pred CCCcceeecCCCCCcccchhcccceeEEEeecCccCCCCCCHHHHHHHH----HhcCCCCccccccCchHHHHHHHHHHH
Q 019931 85 GDENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLA 160 (334)
Q Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~g~~~l~f~sn~yLgl~~~p~v~~a~~----~~g~g~~~sr~~~G~~~~~~~LE~~La 160 (334)
| ++||||++|+++|+..+|+|++++. +|+.+.+.++...|..+..++++++++
T Consensus 38 g-----------------------~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la 94 (385)
T PRK05958 38 G-----------------------RRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELA 94 (385)
T ss_pred C-----------------------ceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHH
Confidence 4 9999999999999988999999664 455555667777788889999999999
Q ss_pred hHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHH
Q 019931 161 DLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMS 240 (334)
Q Consensus 161 ~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~ 240 (334)
++++.+.++++++|++++..++.+++++ ||.|+++...|.++..++.+. +.+++.++.+|++
T Consensus 95 ~~~~~~~~i~~~~g~~~~~~~l~~~~~~--------------gd~V~~~~~~~~~~~~~~~~~----g~~~~~~~~~d~~ 156 (385)
T PRK05958 95 EWFGAERALLFSSGYAANLAVLTALAGK--------------GDLIVSDKLNHASLIDGARLS----RARVRRYPHNDVD 156 (385)
T ss_pred HHhCCCcEEEECcHHHHHHHHHHHhCCC--------------CCEEEEeCccCHHHHHHHHhc----CCceEEeCCCCHH
Confidence 9999888999999999999888776553 788999999999988887776 7888888889999
Q ss_pred HHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCC-CccEEEec
Q 019931 241 HLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCER-DVDICVGT 319 (334)
Q Consensus 241 ~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~-~~Div~~S 319 (334)
+++++++..++++++|+++++++++|...|+++|.++|++||++||+||+|+.|+++++|.+....+++.. ..+|+++|
T Consensus 157 ~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s 236 (385)
T PRK05958 157 ALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGT 236 (385)
T ss_pred HHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEe
Confidence 99999975333478899999999999999999999999999999999999998888776665544334432 23588999
Q ss_pred CcccccCCccEEeeC
Q 019931 320 LSKAAGCQGGFIACR 334 (334)
Q Consensus 320 lsKa~G~~GG~i~~~ 334 (334)
|||+||+.||+++++
T Consensus 237 ~sK~~~~~Gg~~~~~ 251 (385)
T PRK05958 237 LGKALGSSGAAVLGS 251 (385)
T ss_pred chhhcccCCcEEEcC
Confidence 999999999998764
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=264.10 Aligned_cols=211 Identities=30% Similarity=0.494 Sum_probs=196.8
Q ss_pred ccceeEEEeecCccCCCCCCHHHHH----HHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHH
Q 019931 106 RQFKRLLLFSGNDYLGLSSHPTIAK----AAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAV 181 (334)
Q Consensus 106 ~~g~~~l~f~sn~yLgl~~~p~v~~----a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~a 181 (334)
.+|++++||+|+|||||..++++++ .+++||.|+||.|.++|+.+.|..||+.||+|+|+|++++++-|+++...+
T Consensus 91 i~G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E~aivYs~gF~ti~S~ 170 (467)
T KOG1358|consen 91 IDGKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTEDAIVYSYGFSTIESA 170 (467)
T ss_pred ecCceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCcceeeeccccchhhhc
Confidence 6789999999999999999999998 458999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCC------CC---
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCT------MR--- 252 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~------~~--- 252 (334)
+.|++++ ||+|+.|...+..+..|++++ ...+..|.||||++||.++.+.. ++
T Consensus 171 ipafsKr--------------GDIi~~de~~nfaIq~GlqlS----RS~i~~Fkhndm~~lerll~E~~~~~~K~~k~~~ 232 (467)
T KOG1358|consen 171 IPAFSKR--------------GDIIFVDEAVNFAIQKGLQLS----RSTISYFKHNDMEDLERLLPEQEDEDQKNPKKAL 232 (467)
T ss_pred chhhhcc--------------CcEEEEehhhhHHHHHHHhhh----hheeEEecCCCHHHHHHhccCcchhhhhcccccc
Confidence 9998875 999999999999999999999 67889999999999999886532 11
Q ss_pred -cEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCccE
Q 019931 253 -KKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQGGF 330 (334)
Q Consensus 253 -~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~GG~ 330 (334)
++.|++|++|-++|+++|+++|++++.||...+|+||..++|++|++|+|+++|+++. .++|++++|+.-+++..|||
T Consensus 233 ~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~GgF 312 (467)
T KOG1358|consen 233 TRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGGGF 312 (467)
T ss_pred ceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccccCce
Confidence 5689999999999999999999999999999999999999999999999999999987 67899999999999999999
Q ss_pred EeeC
Q 019931 331 IACR 334 (334)
Q Consensus 331 i~~~ 334 (334)
++|+
T Consensus 313 c~G~ 316 (467)
T KOG1358|consen 313 CAGK 316 (467)
T ss_pred eecc
Confidence 9874
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=245.82 Aligned_cols=211 Identities=41% Similarity=0.663 Sum_probs=179.1
Q ss_pred ccceeEEEeecCccCCCCCCHHHHHHHH----HhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHH
Q 019931 106 RQFKRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAV 181 (334)
Q Consensus 106 ~~g~~~l~f~sn~yLgl~~~p~v~~a~~----~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~a 181 (334)
++|+++|||++++|+|+..+|.++++++ +++.+.+.++...|..++++++++.+++++|.+..+++++|++++..+
T Consensus 39 ~~g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~ 118 (397)
T PRK06939 39 ADGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTEDAILYSSCFDANGGL 118 (397)
T ss_pred cCCCeEEEeeccCccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCCCcEEEEcChHHHHHHH
Confidence 4569999999999999999999998554 345555667778898899999999999999988889999999999999
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcC---CCCcEEEEE
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCC---TMRKKVVVT 258 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~---~~~~~lVv~ 258 (334)
+.+++++ ||.|+++.+.|.++..++.+. +++++.++++|+++|++++++. ..++++|++
T Consensus 119 ~~~l~~~--------------gd~vi~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~ 180 (397)
T PRK06939 119 FETLLGK--------------EDAIISDALNHASIIDGVRLC----KAKRYRYANNDMADLEAQLKEAKEAGARHKLIAT 180 (397)
T ss_pred HHHhCCC--------------CCEEEEEhhhhHHHHHHHHhc----CCceEEeCCCCHHHHHHHHHhhhccCCCCeEEEE
Confidence 9887764 889999999999998888877 7788888889999999988752 226789999
Q ss_pred cCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc-cCCccEEeeC
Q 019931 259 DSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQGGFIACR 334 (334)
Q Consensus 259 e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~-G~~GG~i~~~ 334 (334)
++++|++|.+.|+++|.++|++||++||+||+|++|.++..|.+....+++.+++||+++||||+| |..|||++++
T Consensus 181 ~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~ 257 (397)
T PRK06939 181 DGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGR 257 (397)
T ss_pred ecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccCceEEEeC
Confidence 999999999999999999999999999999999877776655544445566566789999999999 6688999864
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=244.91 Aligned_cols=207 Identities=46% Similarity=0.742 Sum_probs=173.5
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHH----HhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVA 184 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~----~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~a 184 (334)
|+|++||||+|||+++||+|+++++ +|+.+.+.+++..|..+..+++++.++++++.+.++++++|++++..++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~ 80 (349)
T cd06454 1 KKVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLST 80 (349)
T ss_pred CCceecccCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHH
Confidence 5799999999999999999999665 455544566788888999999999999999998899999999999988887
Q ss_pred HhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCC--CCcEEEEEcCCC
Q 019931 185 VGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCT--MRKKVVVTDSLF 262 (334)
Q Consensus 185 l~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~--~~~~lVv~e~v~ 262 (334)
++++ ||.|+++.+.|.+....++.. +++++.++..|++++++++++.. .++++|++++++
T Consensus 81 ~~~~--------------gd~Vl~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~ 142 (349)
T cd06454 81 LAGK--------------GDLIISDSLNHASIIDGIRLS----GAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVY 142 (349)
T ss_pred hcCC--------------CCEEEEehhhhHHHHHHHHHc----CCceEEecCCCHHHHHHHHHHhhccCCCeEEEEeccc
Confidence 7654 788999999999988777665 78888888889999999997632 357899999999
Q ss_pred CCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC-CCCCccEEEecCcccccCCccEEeeC
Q 019931 263 SMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN-CERDVDICVGTLSKAAGCQGGFIACR 334 (334)
Q Consensus 263 n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~-~~~~~Div~~SlsKa~G~~GG~i~~~ 334 (334)
|++|.+.|+++|.++|+++|+++|+|++|+.|.++..+.+.. ... ...+.|++++|+||++|..||+++++
T Consensus 143 ~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~gG~i~~~ 214 (349)
T cd06454 143 SMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVE-EFGGLTDDVDIIMGTLGKAFGAVGGYIAGS 214 (349)
T ss_pred cCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChh-hhccccccCcEEEeechhhhcccCCEEECC
Confidence 999999999999999999999999999999887765444331 122 22456899999999999999988753
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=243.65 Aligned_cols=209 Identities=44% Similarity=0.670 Sum_probs=179.7
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHH----HhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIV 183 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~----~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~ 183 (334)
|++++||++++++|+..+|.+++++. +++...+.++...|..++++++++++++++|.+.++++++|+++++.++.
T Consensus 32 g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~ 111 (385)
T TIGR01825 32 GKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLS 111 (385)
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHH
Confidence 49999999999999999999998553 34544556677788889999999999999998888999999999999888
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCC-CCcEEEEEcCCC
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCT-MRKKVVVTDSLF 262 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~-~~~~lVv~e~v~ 262 (334)
+++.+ ||.|+++.++|.+...++.+. +.++..+++.|++++++.+++.. +++++|++++++
T Consensus 112 ~~~~~--------------gd~vi~~~~~~~~~~~~~~~~----g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~ 173 (385)
T TIGR01825 112 ALLRK--------------GDIVLSDELNHASIIDGLRLT----KATKKIYKHADMDDLDRVLRENPSYGKKLIVTDGVF 173 (385)
T ss_pred HhCCC--------------CCEEEEEccccHHHHHHHHhc----CCceEEeCCCCHHHHHHHHHhhccCCCeEEEEecCC
Confidence 87654 788999999999988887776 77788888899999999887532 368899999999
Q ss_pred CCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCccEEeeC
Q 019931 263 SMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334 (334)
Q Consensus 263 n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~GG~i~~~ 334 (334)
|++|.+.|+++|.++|++||+++|+||+|+.|+++++|.+...++++.+++||+++||||+||+.|||++++
T Consensus 174 ~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~gG~~~~~ 245 (385)
T TIGR01825 174 SMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVGGYAAGH 245 (385)
T ss_pred cCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcCCCEEecC
Confidence 999999999999999999999999999999888876666655566666778999999999999999998764
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=236.61 Aligned_cols=211 Identities=48% Similarity=0.722 Sum_probs=179.0
Q ss_pred ccceeEEEeecCccCCCCCCHHHHHHHH----HhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHH
Q 019931 106 RQFKRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAV 181 (334)
Q Consensus 106 ~~g~~~l~f~sn~yLgl~~~p~v~~a~~----~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~a 181 (334)
.+|+++|||++|+++|+..||+++++++ +|+.+.+.++...|+.+...+++++++++++.+..+++++|++++..+
T Consensus 13 ~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~G~~~~~~~ 92 (360)
T TIGR00858 13 RDGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFSSGYLANVGV 92 (360)
T ss_pred ECCceEEecccCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCCEEEECchHHHHHHH
Confidence 4569999999999999999999999654 456665667777888888899999999999988899999999999988
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCC-CCcEEEEEcC
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCT-MRKKVVVTDS 260 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~-~~~~lVv~e~ 260 (334)
+.+++++ ||.|+++.+.|.+...++.+. +.+++.++..|+++|++++++.. .++++|++++
T Consensus 93 l~~~~~~--------------gd~v~~~~~~~~~~~~~~~~~----g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~ 154 (360)
T TIGR00858 93 ISALVGK--------------GDLILSDALNHASLIDGCRLS----GARVRRYRHNDVEHLERLLEKNRGERRKLIVTDG 154 (360)
T ss_pred HHHhCCC--------------CCEEEEEccccHHHHHHHHhc----CCceEEecCCCHHHHHHHHHHcccCCCeEEEEeC
Confidence 8776653 788999999999988888776 78888888889999999997532 3578999999
Q ss_pred CCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCccEEeeC
Q 019931 261 LFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQGGFIACR 334 (334)
Q Consensus 261 v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~GG~i~~~ 334 (334)
++|++|.+.|+++|.++|+++|++||+||+|+.|.++..+.+....+++. .+.+|+++||||+||+.|||++++
T Consensus 155 ~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~gG~~~~~ 229 (360)
T TIGR00858 155 VFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYGAYVAGS 229 (360)
T ss_pred CccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccCcEEEcC
Confidence 99999999999999999999999999999999887776555555555554 356899999999999999998864
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-28 Score=236.07 Aligned_cols=215 Identities=28% Similarity=0.384 Sum_probs=166.1
Q ss_pred hcccceeEEEeecCccCCCCCCHHHHHHHHH----hc-CCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHH
Q 019931 104 FARQFKRLLLFSGNDYLGLSSHPTIAKAAAR----HG-MGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAAN 178 (334)
Q Consensus 104 ~~~~g~~~l~f~sn~yLgl~~~p~v~~a~~~----~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An 178 (334)
++.+|++||||+|++||||.+||+|++|+.+ ++ .+.++++... .++.+.++|++|+++++. .+++++||++||
T Consensus 41 ~d~~g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~-~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~ 118 (402)
T PRK07505 41 TLADGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRV-RSQILKDLEEALSELFGA-SVLTFTSCSAAH 118 (402)
T ss_pred EecCCceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhh-hhHHHHHHHHHHHHHhCC-CEEEECChHHHH
Confidence 4677899999999999999999999997654 44 2333344322 467889999999999998 899999999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEE
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVT 258 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~ 258 (334)
..+++.+... ++++ ++.++|+.+..+|+++........ .+.+++.++++|+++|++++++. .+.+|++
T Consensus 119 ~~ai~~~~~~--~~~~------~~~~vi~~~~~~H~s~~~~~~~~~--~~~~v~~~~~~d~~~l~~~~~~~--~~~~vl~ 186 (402)
T PRK07505 119 LGILPLLASG--HLTG------GVPPHMVFDKNAHASLNILKGICA--DETEVETIDHNDLDALEDICKTN--KTVAYVA 186 (402)
T ss_pred HHHHHHHHhc--ccCC------CCCCEEEEchhhhHhHHhhhhhhh--cCCeEEEeCCCCHHHHHHHHhcC--CCEEEEE
Confidence 9999765431 0111 246788899999998753222211 15678889999999999998641 2345555
Q ss_pred cCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCC-CCCccEEEecCcccccCCccEEee
Q 019931 259 DSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNC-ERDVDICVGTLSKAAGCQGGFIAC 333 (334)
Q Consensus 259 e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~-~~~~Div~~SlsKa~G~~GG~i~~ 333 (334)
++ .|++|.+.|+++|.++|++||++||+||+|+.+.+|++|.++. ++++. .++..|++.||||+||+.||++++
T Consensus 187 ~p-~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~Gg~~~~ 262 (402)
T PRK07505 187 DG-VYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASGGVIML 262 (402)
T ss_pred ec-ccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhccCeEEEe
Confidence 55 5677999999999999999999999999998877899888754 56676 566678899999999988899763
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=229.84 Aligned_cols=180 Identities=22% Similarity=0.242 Sum_probs=146.1
Q ss_pred ecCccCCCCCCHHHHHHH----HHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHHhhh
Q 019931 115 SGNDYLGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAVGNI 188 (334)
Q Consensus 115 ~sn~yLgl~~~p~v~~a~----~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al~~~ 188 (334)
.-||||||++||.|+++. ++|+ |+.++|++||++||+++|. +++++++||++||..++.+++++
T Consensus 25 ~~~~ylgl~~~~~~~~~~~~~~~~~~----------g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~ 94 (346)
T TIGR03576 25 SLYDLTGLAGGFKIDEEDLELLETYV----------GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPP 94 (346)
T ss_pred cccccccCCCChhHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCC
Confidence 358999999999999854 4563 5679999999999999998 88999999999999999999875
Q ss_pred hhhccCCCccCCCCCeEEE---EcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCC
Q 019931 189 ASLLAGDEKSFKDEKIAIF---SDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMD 265 (334)
Q Consensus 189 ~~~~~~~~~~~~~~gd~Vl---~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~ 265 (334)
||.|+ .|.++|+++.++++++ ++++ +.++|+++++. . +++++|++++ +||+
T Consensus 95 --------------gd~Vli~~~d~p~~~s~~~~~~l~----ga~~--~~~~~l~~l~~----~-~~~~lIiitg-~s~~ 148 (346)
T TIGR03576 95 --------------GRKVVHYLPEKPAHPSIPRSCKLA----GAEY--FESDELSELKK----I-DGTSLVVITG-STMD 148 (346)
T ss_pred --------------CCEEEECCCCCCCchhHHHHHHHc----CCEE--eccCCHHHHhh----C-cCceEEEEEC-CCCC
Confidence 67776 4578999999999988 7765 44567666432 1 2567777765 6999
Q ss_pred CCc---cCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc-cCCccEEeeC
Q 019931 266 GDF---APMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQGGFIACR 334 (334)
Q Consensus 266 G~~---~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~-G~~GG~i~~~ 334 (334)
|++ .||++|+++|++||++||+||||+.|+.|..|.+.+..+ ++||+++||||++ |..|||++++
T Consensus 149 G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~----~~divv~s~SKalaG~r~G~v~~~ 217 (346)
T TIGR03576 149 LKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDL----GADLVVTSTDKLMDGPRGGLLAGR 217 (346)
T ss_pred CcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHc----CCcEEEeccchhccccceEEEEeC
Confidence 998 689999999999999999999999987665455443333 3579999999999 7889999875
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=229.67 Aligned_cols=193 Identities=20% Similarity=0.247 Sum_probs=153.2
Q ss_pred EeecCccCCCCCCHHHHHHH-----HHhcCCCCccccccCchHHHHHHHH----HHHhHhCCCcEEE-eccHHHHHHHHH
Q 019931 113 LFSGNDYLGLSSHPTIAKAA-----ARHGMGPRGSALICGYTNYHRLLES----CLADLKKKEDCLL-CPTGFAANMAVI 182 (334)
Q Consensus 113 ~f~sn~yLgl~~~p~v~~a~-----~~~g~g~~~sr~~~G~~~~~~~LE~----~La~~~g~e~alv-~~sG~~An~~ai 182 (334)
+++||||+ ||++++++ .+|+.|++++|++.| .+.+++||+ ++++++|.+++++ ++||++||.+++
T Consensus 33 l~~sen~~----~p~v~~a~~~~~~~~~~~g~~gsr~~~G-~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l 107 (416)
T PRK13034 33 LIASENFT----SPAVMEAQGSVLTNKYAEGYPGKRYYGG-CEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVY 107 (416)
T ss_pred ecccccCC----CHHHHHHhcchhhcCCCCCCCCCcccCC-ChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHH
Confidence 46888997 99999943 678999999999999 588999999 9999999999976 489999999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchh-hHHHHHHhhhcCCcEEEEeeC------CCHHHHHHHHhcCCCCcEE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHAS-IIDGIRIAERTKMVEVFVYKH------CDMSHLKTLLSCCTMRKKV 255 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s-~~~g~~ls~~~~g~~v~~~~~------~D~~~Le~~l~~~~~~~~l 255 (334)
.+++++ ||.|+++...|++ +..+++.+......+...|++ .|+++|+++++.. ++++
T Consensus 108 ~al~~~--------------GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~kl 171 (416)
T PRK13034 108 LALLKP--------------GDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEH--KPKL 171 (416)
T ss_pred HHhcCC--------------CCEEEEcCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHHHHHhhc--CCeE
Confidence 998764 8999999999998 566665431110112245655 6999999998652 5678
Q ss_pred EEE-cCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc-cCCccEEee
Q 019931 256 VVT-DSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQGGFIAC 333 (334)
Q Consensus 256 Vv~-e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~-G~~GG~i~~ 333 (334)
|++ +++++ ...|+++|.++|++||++||+|+||++|+++. |. +.+...++|++++|++|++ |+.||+|++
T Consensus 172 Vi~~~~~~g---~~~dl~~l~~la~~~g~~livD~Aha~G~~~~---g~--~~~~~~~~Di~~~s~~K~l~g~~GG~v~~ 243 (416)
T PRK13034 172 IIAGFSAYP---RELDFARFREIADEVGALLMVDMAHIAGLVAA---GE--HPNPFPHAHVVTTTTHKTLRGPRGGMILT 243 (416)
T ss_pred EEECCCccc---cccCHHHHHHHHHHcCCEEEEeCcccccCccc---CC--CCCCCCCceEEEEeCcccCCCCCCeEEEE
Confidence 877 45554 46789999999999999999999999998863 32 2222245899999999999 678999876
Q ss_pred C
Q 019931 334 R 334 (334)
Q Consensus 334 ~ 334 (334)
+
T Consensus 244 ~ 244 (416)
T PRK13034 244 N 244 (416)
T ss_pred C
Confidence 3
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=225.96 Aligned_cols=205 Identities=22% Similarity=0.216 Sum_probs=157.0
Q ss_pred hcccceeEEEeec---CccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSG---NDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~s---n~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
++.+|++||||+| ++|||+ +||+|.+|+.+. ........ ...++.+.+|+++|+++.+.+++++++||++||.
T Consensus 30 ~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e 106 (397)
T TIGR03246 30 WDQQGKEYIDFAGGIAVNALGH-AHPELVKALIEQADKLWHIGN--GYTNEPVLRLAKKLVDATFADKVFFCNSGAEANE 106 (397)
T ss_pred EeCCCCEEEECCcCHhhccCCC-CCHHHHHHHHHHHHhcccccC--ccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHH
Confidence 4577899999998 699999 599999977543 22211111 1235778999999999998889999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc--------CCcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT--------KMVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~--------~g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
++++.+..- +.. +..+++.++|..+..+|+++..++.++... ....+..++|+|+++|++++.+
T Consensus 107 ~Alk~ar~~----~~~-~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--- 178 (397)
T TIGR03246 107 AALKLARRY----ALD-KHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALISD--- 178 (397)
T ss_pred HHHHHHHHH----HHh-cCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCCCHHHHHHHhcc---
Confidence 999965321 000 000135788999999999988777665210 0124567899999999999964
Q ss_pred CcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCccccc
Q 019931 252 RKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G 325 (334)
++++|++|+++++.|.+.| |++|+++|++||++||+||+| .|+ |++|.+++ +++++.| ||+ ||||++|
T Consensus 179 ~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tG~-Gr~G~~~a~~~~gv~p--Di~--t~~K~lg 251 (397)
T TIGR03246 179 KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TGV-GRTGELYAYMHYGVTP--DIL--TSAKALG 251 (397)
T ss_pred CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh-hcC-CccccchhhhhcCCCC--CEE--Eeehhhh
Confidence 6899999999999996543 999999999999999999999 574 99998764 6788766 555 8999997
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=230.07 Aligned_cols=177 Identities=23% Similarity=0.234 Sum_probs=136.8
Q ss_pred HHhcCCCCccccccCchHHHHHHHH----HHHhHhCC-CcEEEe----ccHHHHHHHHHHHHhhhhhhccCCCccCCCCC
Q 019931 133 ARHGMGPRGSALICGYTNYHRLLES----CLADLKKK-EDCLLC----PTGFAANMAVIVAVGNIASLLAGDEKSFKDEK 203 (334)
Q Consensus 133 ~~~g~g~~~sr~~~G~~~~~~~LE~----~La~~~g~-e~alv~----~sG~~An~~ai~al~~~~~~~~~~~~~~~~~g 203 (334)
++|+.|++++|++.|+. .++++|+ +..++++. +.++++ +||+.||++++.+|+++ |
T Consensus 60 ~ky~~G~~g~r~~~G~~-~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~p--------------g 124 (475)
T PLN03226 60 NKYSEGLPGARYYGGNE-YIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQP--------------H 124 (475)
T ss_pred ccccCCCCCCcCcCCCh-hHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCCC--------------C
Confidence 68999999999999986 8899997 33344554 445545 89999999999999875 8
Q ss_pred eEEEEcC------CCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEEEEE-cCCCCCCCCccC
Q 019931 204 IAIFSDA------LNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKVVVT-DSLFSMDGDFAP 270 (334)
Q Consensus 204 d~Vl~d~------~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~-e~v~n~~G~~~p 270 (334)
|.|+.+. ++|++..++.+++......++++|.|+ |+++|++++.+. ++++|++ +++|++ ..|
T Consensus 125 D~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~--~pklIv~~~S~~s~---~~D 199 (475)
T PLN03226 125 DRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLF--RPKLIIAGASAYPR---DWD 199 (475)
T ss_pred CEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhc--CCeEEEEecCcCCC---ccC
Confidence 8899854 678888777766621111233477887 999999999753 4555544 888877 456
Q ss_pred HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc-cCCccEEeeC
Q 019931 271 MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQGGFIACR 334 (334)
Q Consensus 271 L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~-G~~GG~i~~~ 334 (334)
+++|.++|+++|++|++|+||++|+++..+.. ...+++|++++|++|+| |+.||+|+++
T Consensus 200 ~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~-----~p~~~~Div~~t~hK~L~GP~Gg~I~~~ 259 (475)
T PLN03226 200 YARMRKIADKVGALLMCDMAHISGLVAAQEAA-----SPFEYCDVVTTTTHKSLRGPRGGMIFFR 259 (475)
T ss_pred HHHHHHHHHHcCCEEEEEchhhhCcccCCCCC-----CCCCCCeEEEecCcccccCCCceEEEEc
Confidence 77899999999999999999999998764422 12246899999999999 8899999874
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-26 Score=217.77 Aligned_cols=209 Identities=22% Similarity=0.304 Sum_probs=164.3
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC-CCcEEEeccHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK-KEDCLLCPTGFAAN 178 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g-~e~alv~~sG~~An 178 (334)
+|++||+||||.++ +.||. +||.+++|+++. ..-...|++++ ++...+|.++|++..+ .++++++|||++||
T Consensus 37 ~D~~G~~YlDf~~Giav~~lGH-~hP~iv~al~~Q~~kl~h~sn~~~--~~~~~~la~~L~~~s~~~d~vff~NSGaEA~ 113 (404)
T COG4992 37 WDQQGREYLDFAAGIAVNNLGH-CHPALVEALKEQAEKLWHVSNLFY--NEPQAELAEKLVELSPFADRVFFCNSGAEAN 113 (404)
T ss_pred ECCCCCEeeeeccceeeeccCC-CCHHHHHHHHHHHHHhhhcccccC--ChHHHHHHHHHHhhCccccEEEEcCCcHHHH
Confidence 57888999999885 55777 599999988653 33334566665 6888999999999996 89999999999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc--------CCcEEEEeeCCCHHHHHHHHhcCC
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT--------KMVEVFVYKHCDMSHLKTLLSCCT 250 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~--------~g~~v~~~~~~D~~~Le~~l~~~~ 250 (334)
.++|+...+- +. ..++..+|.+...+|+-+...+.+.... .-..+..++.||++++++++.+
T Consensus 114 EaAiKlARk~----~~----~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~-- 183 (404)
T COG4992 114 EAALKLARKY----TG----DPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDE-- 183 (404)
T ss_pred HHHHHHHHHH----cC----CCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhcc--
Confidence 9999964432 11 0124578888999998776555544211 0123556788999999999986
Q ss_pred CCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCccccc
Q 019931 251 MRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G 325 (334)
+|..|++|++....|.++| |+++++||++||++||+||+|+. +||+|+.++ +|+++.|| |+ |++|++|
T Consensus 184 -~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG--~GRTGk~fA~e~~gV~PD--I~--tlaK~Lg 256 (404)
T COG4992 184 -DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTG--LGRTGKLFAYEHYGVEPD--IL--TLAKALG 256 (404)
T ss_pred -CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccC--CCccchHHHHHHhCCCCC--EE--Eeecccc
Confidence 8999999999999998766 89999999999999999999994 899999884 79999985 55 8999997
Q ss_pred C---CccEEe
Q 019931 326 C---QGGFIA 332 (334)
Q Consensus 326 ~---~GG~i~ 332 (334)
+ +|++++
T Consensus 257 GG~PigA~la 266 (404)
T COG4992 257 GGFPIGAMLA 266 (404)
T ss_pred CCccceeeEE
Confidence 4 455554
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-25 Score=214.11 Aligned_cols=184 Identities=17% Similarity=0.105 Sum_probs=155.2
Q ss_pred CHHHHHHHHHhcCCCCccccccCch-----HHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccC
Q 019931 125 HPTIAKAAARHGMGPRGSALICGYT-----NYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSF 199 (334)
Q Consensus 125 ~p~v~~a~~~~g~g~~~sr~~~G~~-----~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~ 199 (334)
....++++++|+.|++++|+..|+. +.+.++++++|+++|.+.++++++|+++|..++.+++.+
T Consensus 21 ~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~~~----------- 89 (370)
T TIGR02539 21 TEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCKE----------- 89 (370)
T ss_pred cHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhhCC-----------
Confidence 4566778999999999888887765 355778888999999999999999999999999998764
Q ss_pred CCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCC----CCcEEEEEcCCCCCCCCc
Q 019931 200 KDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCT----MRKKVVVTDSLFSMDGDF 268 (334)
Q Consensus 200 ~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~----~~~~lVv~e~v~n~~G~~ 268 (334)
+|.|+++.+.|.+++.+++.. +++++.++++ |+++|++++++.+ .++++|++++++|++|++
T Consensus 90 ---gd~Vl~~~~~h~s~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~ 162 (370)
T TIGR02539 90 ---GDWVVLDGLAHYTSYVAAERA----GLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNL 162 (370)
T ss_pred ---CCEEEECCcccHHHHHHHHHc----CCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccc
Confidence 789999999999988887766 8999999986 8999999986421 257899999999999999
Q ss_pred cCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc--cEEeeC
Q 019931 269 APMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG--GFIACR 334 (334)
Q Consensus 269 ~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G--G~i~~~ 334 (334)
.|+++|.++|++||++||+|+||+.|.++..+. ..++|++++||||++|+.| ||++++
T Consensus 163 ~~l~~i~~la~~~~~~livDea~~~g~~~~~~~--------~~~~di~v~s~sK~~~~~g~~G~l~~~ 222 (370)
T TIGR02539 163 PDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAK--------EIGADFIVGSGHKSMAASGPCGVLGMS 222 (370)
T ss_pred cCHHHHHHHHHHcCCeEEEECccccCCcCCCHH--------HcCCCEEEeeCcccccCCCCEEEEEEC
Confidence 999999999999999999999999875443221 2246899999999998767 888764
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=213.21 Aligned_cols=205 Identities=21% Similarity=0.245 Sum_probs=154.1
Q ss_pred hcccceeEEEeec---CccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSG---NDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~s---n~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
++.+|++||||+| ++|||++ ||+|.+++.+.. .....+... .++...+|.++|++..+.+++++++||++||.
T Consensus 31 ~d~dG~~~lD~~sg~~~~~lGh~-~p~v~~a~~~q~~~~~~~~~~~--~~~~~~~la~~l~~~~~~~~v~f~~SGseA~e 107 (395)
T PRK03715 31 YDHNGKRYLDFIQGWAVNCLGHC-NPGMVEALAAQAEKLINPSPAF--YNEPMAKLAGLLTQHSCFDKVFFANSGAEANE 107 (395)
T ss_pred EECCCCEEEECCcChhhccCCCC-CHHHHHHHHHHHHhcccccccc--cCHHHHHHHHHHhhccCCCEEEEeCCcHHHHH
Confidence 4577899999987 7899997 799999876542 221122211 24555677777776655678999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC--------CcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK--------MVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~--------g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
++++.+.... . +-.+++.++|..+..+|+++..++.++.... ...+...+++|+++|++++.+
T Consensus 108 ~Aik~ar~~~----~--~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--- 178 (395)
T PRK03715 108 GAIKLARKWG----R--KHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITD--- 178 (395)
T ss_pred HHHHHHHHHh----h--ccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCC---
Confidence 9999765310 0 0011346788899999999988887763110 001223346899999998863
Q ss_pred CcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccccC
Q 019931 252 RKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++|++|+++++.|.+.| +++|+++|++||++||+||+|+ | +|++|++++ +++++.| || .||+|++|.
T Consensus 179 ~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G-~GRtG~~~a~~~~gv~P--Di--~t~gK~lg~ 252 (395)
T PRK03715 179 KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQT-G-CGRTGTLFAYELSGIEP--DI--MTLGKGIGG 252 (395)
T ss_pred CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCCCcchhhHhhcCCCC--ce--eeehhhhhC
Confidence 6889999999999999887 9999999999999999999999 6 899999874 7889876 55 489999975
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=212.59 Aligned_cols=213 Identities=20% Similarity=0.208 Sum_probs=156.8
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
++.+|++||||+++ +|||+ +||+|.+++.+.- .+.. .... ..++.+.+|+++|+++.+.+++++++||++||.
T Consensus 35 ~d~dG~~~iD~~~~~~~~~lGh-~~p~v~~a~~~~~~~~~~-~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~sGseA~e 111 (403)
T PRK05093 35 WDQQGKEYIDFAGGIAVTALGH-CHPALVKALKEQGEKLWH-ISNV-FTNEPALRLAKKLIDATFAERVFFANSGAEANE 111 (403)
T ss_pred EeCCCCEEEEcCcCHHhccCCC-CCHHHHHHHHHHHHhcCc-ccCc-cCCHHHHHHHHHHHhhCCCCEEEEeCchHHHHH
Confidence 45778999999995 89999 8999999775432 2221 1222 235667899999999988889999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh--------cCCcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER--------TKMVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~--------~~g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
++++.+... +. .+...++..+|..+..+|+++...+.+... ....+++.++++|++++++++.+
T Consensus 112 ~a~klar~~----~~-~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--- 183 (403)
T PRK05093 112 AAFKLARRY----AC-DRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDLAAVKAVIDD--- 183 (403)
T ss_pred HHHHHHHHH----Hh-hcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCCCHHHHHHHhcC---
Confidence 999954321 00 000013567888999999997755543210 01234677899999999998863
Q ss_pred CcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccccC
Q 019931 252 RKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++|++|+++++.|...| +++|+++|++||+++|+||+|+ | +|++|.++. +++++.| | +.||||++++
T Consensus 184 ~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g-~g~~g~~~~~~~~~~~p--d--i~s~sK~l~~ 257 (403)
T PRK05093 184 HTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQT-G-MGRTGDLFAYMHYGVTP--D--ILTSAKALGG 257 (403)
T ss_pred CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCCCccchhhhhcCCCC--C--EEEecccccC
Confidence 6899999999998887654 9999999999999999999999 5 677776543 4566655 4 4599999973
Q ss_pred --CccEEee
Q 019931 327 --QGGFIAC 333 (334)
Q Consensus 327 --~GG~i~~ 333 (334)
..|++++
T Consensus 258 G~rig~vv~ 266 (403)
T PRK05093 258 GFPIGAMLT 266 (403)
T ss_pred CcceEEEEE
Confidence 1255544
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-24 Score=209.63 Aligned_cols=209 Identities=19% Similarity=0.167 Sum_probs=153.9
Q ss_pred cccceeEEEeecCccCCCC---CCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHH
Q 019931 105 ARQFKRLLLFSGNDYLGLS---SHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMA 180 (334)
Q Consensus 105 ~~~g~~~l~f~sn~yLgl~---~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ 180 (334)
+.+|++||||+|+ |+++. .||+|++|+.+. ......++.. .++.+.+|+++|+++++.+.+++++||++||.+
T Consensus 33 ~~~g~~~lD~~s~-~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~ 109 (401)
T TIGR01885 33 DVEGKRYLDFLSA-YSAVNQGHCHPKIVKALTEQAQKLTLSSRAF--YNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVET 109 (401)
T ss_pred eCCCCEEEEcccC-HhhccCCCCCHHHHHHHHHHHHhcccccccc--CCHHHHHHHHHHHhhcCCCEEEEeCccHHHHHH
Confidence 4567999999995 88777 499999977543 2122233322 468889999999999998999999999999999
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcC-CCchhhHHHHHHhhhc-----CC---cEEEEeeCCCHHHHHHHHhcCCC
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDA-LNHASIIDGIRIAERT-----KM---VEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~-~~H~s~~~g~~ls~~~-----~g---~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
+++.+...... ..+ .. .+++.|+++. .+|+++..++.++... .+ ..+..++|+|+++||+++++..+
T Consensus 110 ai~~a~~~~~~-~~~--~~-~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 185 (401)
T TIGR01885 110 AIKLARKWGYK-VKG--IP-ENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYNNLEALEEALEDHGP 185 (401)
T ss_pred HHHHHHHHhhh-hcC--CC-CCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCCCHHHHHHHHHhcCC
Confidence 99976432100 000 00 1245566554 5688888888765210 01 24577899999999999975444
Q ss_pred CcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccccC
Q 019931 252 RKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G~ 326 (334)
+..+|++|++++++|.+.| |++|+++|++||+++|+||+|. | +|++|.+++ +++++.+ |++ +|||++++
T Consensus 186 ~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g-~g~~G~~~~~~~~~~~~--di~--~~gK~l~~ 259 (401)
T TIGR01885 186 NVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQT-G-LGRTGKLLCVDHENVKP--DIV--LLGKALSG 259 (401)
T ss_pred CEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCccchhhHHhhcCCCC--CEE--EeeccccC
Confidence 6789999999999999887 9999999999999999999995 6 788888764 4455544 555 68999974
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=211.27 Aligned_cols=205 Identities=18% Similarity=0.179 Sum_probs=152.8
Q ss_pred hcccceeEEEeec---CccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSG---NDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~s---n~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
++.+|++||||.+ ++|||++ ||+|++|+.+. ......+. ...++.+.+|+++|+++.+.+++++++||++||.
T Consensus 34 ~d~dG~~~lD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~e 110 (406)
T PRK12381 34 WDQQGKEYIDFAGGIAVNALGHA-HPALREALNEQASKFWHTGN--GYTNEPVLRLAKKLIDATFADRVFFCNSGAEANE 110 (406)
T ss_pred EeCCCCEEEEcCcCHhhccCCCC-CHHHHHHHHHHHhhcccccC--ccCCHHHHHHHHHHHhhCCCCeEEEcCCcHHHHH
Confidence 4677899999988 6899997 99999977553 22211111 1235777899999999988889999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc--------CCcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT--------KMVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~--------~g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
++++..... +. ++-.+++..+|..+..+|+.....+.++... ....+..++++|+++|++++.+
T Consensus 111 ~Alk~ar~~----~~-~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--- 182 (406)
T PRK12381 111 AALKLARKY----AH-DRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDD--- 182 (406)
T ss_pred HHHHHHHHH----Hh-hcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccC---
Confidence 999975321 00 0000124567778999999987666655211 0123566788999999999864
Q ss_pred CcEEEEEcCCCCCCCCcc----CHHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCccccc
Q 019931 252 RKKVVVTDSLFSMDGDFA----PMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~----pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G 325 (334)
++++|++|+++++.|.+. ++++|+++|++||++||+||+|. | +|++|.+++ +++++.| |+ .||||++|
T Consensus 183 ~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G-~gr~G~~~~~~~~~v~p--Di--~t~sK~l~ 255 (406)
T PRK12381 183 QTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQT-G-VGRTGELYAYMHYGVTP--DV--LTTAKALG 255 (406)
T ss_pred CeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhh-C-CCCCcchhhhHhhCCCC--CE--EEehhhhh
Confidence 688999999999888543 38999999999999999999994 6 588887754 5677766 44 59999997
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-24 Score=208.23 Aligned_cols=203 Identities=22% Similarity=0.246 Sum_probs=155.6
Q ss_pred hcccceeEEEeec-CccCCCC-CCHHHHHHHHHhc-CCCCcccccc--CchHHHHHHHHHHHhHhC--CCcEEEeccHHH
Q 019931 104 FARQFKRLLLFSG-NDYLGLS-SHPTIAKAAARHG-MGPRGSALIC--GYTNYHRLLESCLADLKK--KEDCLLCPTGFA 176 (334)
Q Consensus 104 ~~~~g~~~l~f~s-n~yLgl~-~~p~v~~a~~~~g-~g~~~sr~~~--G~~~~~~~LE~~La~~~g--~e~alv~~sG~~ 176 (334)
++.+|++||||++ ++|+++. +||+|++++.+.- .+ +++.. +.++.+.+|+++|+++++ .+.+++++||++
T Consensus 31 ~d~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgse 107 (413)
T cd00610 31 YDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKL---THFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTE 107 (413)
T ss_pred EeCCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhC---cCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHH
Confidence 3467799999988 4666666 8999999775432 22 22333 357889999999999998 788999999999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc--------CCcEEEEeeCC-----------
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT--------KMVEVFVYKHC----------- 237 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~--------~g~~v~~~~~~----------- 237 (334)
||..+++++... ++++.+|+.+..+|++....+.++... ...+++.++++
T Consensus 108 a~~~al~~~~~~-----------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (413)
T cd00610 108 AVEAALKLARAY-----------TGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELAD 176 (413)
T ss_pred HHHHHHHHHHHH-----------cCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHH
Confidence 999999976531 124667778889999988777665211 01246678887
Q ss_pred CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCC
Q 019931 238 DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERD 312 (334)
Q Consensus 238 D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~ 312 (334)
|+++|++++++.+.++++|+++++++++|.+.| +++|.++|++||++||+||+|+ | +|+.|.+. .+++++.+
T Consensus 177 d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-g-~g~~g~~~~~~~~~~~~- 253 (413)
T cd00610 177 DLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQT-G-FGRTGKMFAFEHFGVEP- 253 (413)
T ss_pred HHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCcchhhHhhcCCCC-
Confidence 899999998764446789999999999999887 9999999999999999999998 4 56667654 34566544
Q ss_pred ccEEEecCcccccC
Q 019931 313 VDICVGTLSKAAGC 326 (334)
Q Consensus 313 ~Div~~SlsKa~G~ 326 (334)
|+ .||||++++
T Consensus 254 -d~--~t~sK~l~~ 264 (413)
T cd00610 254 -DI--VTLGKGLGG 264 (413)
T ss_pred -Ce--EEEcccccC
Confidence 44 489999986
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-24 Score=206.03 Aligned_cols=208 Identities=22% Similarity=0.255 Sum_probs=156.8
Q ss_pred hcccceeEEEeecCc---cCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSGND---YLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~sn~---yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
++.+|++||||+||+ |||+ +||+|++++.+. ......+.. ...+...+|++++++..+.+.+++++||++||.
T Consensus 24 ~d~~G~~~lD~~s~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~ 100 (377)
T PRK02936 24 TDNNGKTYLDFTSGIAVCNLGH-CHPTVTKAVQEQLDDIWHVSNL--FTNSLQEEVASLLAENSAGDLVFFCNSGAEANE 100 (377)
T ss_pred EeCCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhccccccc--cCCHHHHHHHHHHHhcCCCCEEEEeCCcHHHHH
Confidence 357789999999997 9998 899999977543 222222222 235777888888888777778999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC--------CcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK--------MVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~--------g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
++++..... ++++++|..+..+|+++..++.++.... ...+..++++|+++|++++.+
T Consensus 101 ~A~~~a~~~-----------~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~--- 166 (377)
T PRK02936 101 AALKLARKH-----------TGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNE--- 166 (377)
T ss_pred HHHHHHHHh-----------cCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccC---
Confidence 999854321 1346788899999999888877652110 013456788999999998863
Q ss_pred CcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccccC
Q 019931 252 RKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++|++|+++++.|...+ +++|+++|++||+++|+||+|. | +|++|.++. +++++.+ |+ .||||+++.
T Consensus 167 ~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~-g-~g~~g~~~~~~~~~~~~--di--~t~sK~l~~ 240 (377)
T PRK02936 167 EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQT-G-IGRTGTLFAYEQFGLDP--DI--VTVAKGLGN 240 (377)
T ss_pred CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCchhhHHHhhCCCC--cE--EEEcccccC
Confidence 6899999999999886643 9999999999999999999996 6 688887653 4566655 44 489999984
Q ss_pred --CccEEeeC
Q 019931 327 --QGGFIACR 334 (334)
Q Consensus 327 --~GG~i~~~ 334 (334)
.+|+++++
T Consensus 241 G~~ig~v~~~ 250 (377)
T PRK02936 241 GIPVGAMIGK 250 (377)
T ss_pred CCccEEEEEc
Confidence 24777653
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=206.83 Aligned_cols=215 Identities=17% Similarity=0.134 Sum_probs=156.6
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
++.+|++||||.++ ..||. +||+|.+|+.+. ......++.. .++.+.+|+++|+++.+.+++++++||++||.
T Consensus 35 ~d~~G~~~lD~~~g~~~~~lGh-~~p~v~~ai~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~SGseA~e 111 (396)
T PRK04073 35 KDPEGNRYMDMLSAYSAVNQGH-RHPKIIQALKDQADKVTLTSRAF--HSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVE 111 (396)
T ss_pred EECCCCEEEEcCCCHHhccCCC-CCHHHHHHHHHHHhhcccccccc--CCHHHHHHHHHHHhcCCCCeEEEcCChHHHHH
Confidence 45778999999775 34666 589999977542 2222223322 35778999999999998889999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc---C-----CcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT---K-----MVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~---~-----g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
++++.+..-....+ + ..+++.++|.++..+|+.+...+.++... . -..+..++++|+++|++++.+
T Consensus 112 ~Alk~a~~~~~~~~-g--~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~--- 185 (396)
T PRK04073 112 TAIKAARRWAYDVK-G--VEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYGDLEALKAAITP--- 185 (396)
T ss_pred HHHHHHHHHhhhcc-C--CCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCCCHHHHHHhccc---
Confidence 99997543100000 0 00234678888999999987777665210 0 012456788899999998863
Q ss_pred CcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccccC
Q 019931 252 RKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++|++|+++|++|.+.| |++|+++|++||++||+||+|+ | +|++|..++ +++++.| |++ +|||++|+
T Consensus 186 ~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g-~g~~g~~~~~~~~~~~p--di~--~~sK~lg~ 259 (396)
T PRK04073 186 NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQT-G-LGRTGKLFACDWDNVTP--DMY--ILGKALGG 259 (396)
T ss_pred CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-C-CCcCcHHHHhhhcCCCC--CEE--EecccccC
Confidence 6899999999999999876 8999999999999999999999 4 688776553 4556555 554 79999986
Q ss_pred Cc---cEEee
Q 019931 327 QG---GFIAC 333 (334)
Q Consensus 327 ~G---G~i~~ 333 (334)
.| |++++
T Consensus 260 gg~~ig~~~~ 269 (396)
T PRK04073 260 GVFPISCVAA 269 (396)
T ss_pred CCCcceEEEE
Confidence 43 66665
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=202.94 Aligned_cols=213 Identities=18% Similarity=0.160 Sum_probs=155.2
Q ss_pred hcccceeEEEeec---CccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSG---NDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~s---n~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
++.+|++||||+| +.+||+ +||+|.+|+.+. ..+...+.. ..++.+.+|+++|+++.+.+++++++||++||.
T Consensus 26 ~d~dG~~~lD~~~g~~~~~lGh-~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~~ 102 (389)
T PRK01278 26 IDEDGERYLDFASGIAVNSLGH-AHPHLVEALKEQAEKLWHVSNL--YRIPEQERLAERLVENSFADKVFFTNSGAEAVE 102 (389)
T ss_pred EECCCCEEEECCccHhhccCCC-CCHHHHHHHHHHHHhcCccccc--cCChHHHHHHHHHHhhCCCCEEEEcCCcHHHHH
Confidence 4677899999998 579999 799999977543 222222222 246888999999999988888999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC--------CcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK--------MVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~--------g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
.+++++..-. ..++ .+++..+|..+..+|+.....+.+..... ...+..++++|++++++++++
T Consensus 103 ~al~~ar~~~--~~~G---~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--- 174 (389)
T PRK01278 103 CAIKTARRYH--YGKG---HPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITP--- 174 (389)
T ss_pred HHHHHHHHHH--HhcC---CCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCC---
Confidence 9999764310 0011 01235788889999998776665432100 012334677899999999864
Q ss_pred CcEEEEEcCCCCCCCCcc----CHHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccccC
Q 019931 252 RKKVVVTDSLFSMDGDFA----PMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~----pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++|++|+++|++|... ++++|+++|++||++||+||+|+ | +|++|.++. +++++.+ |+ .||||++++
T Consensus 175 ~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g-~g~~g~~~~~~~~~~~p--di--~t~sK~l~~ 248 (389)
T PRK01278 175 NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQC-G-MGRTGKLFAHEWAGVTP--DI--MAVAKGIGG 248 (389)
T ss_pred CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCCcceeecccCCCC--CE--EEEehhccC
Confidence 789999999999998544 48999999999999999999998 5 678787653 4567655 44 589999973
Q ss_pred --CccEEee
Q 019931 327 --QGGFIAC 333 (334)
Q Consensus 327 --~GG~i~~ 333 (334)
..|++++
T Consensus 249 G~~ig~~~~ 257 (389)
T PRK01278 249 GFPLGACLA 257 (389)
T ss_pred CcceEEEEE
Confidence 2345544
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=203.04 Aligned_cols=205 Identities=20% Similarity=0.231 Sum_probs=153.6
Q ss_pred hcccceeEEEeec---CccCCCCCCHHHHHHHHHhcC-CCCccccccCchHHHHHHHHHHHhHhCC---CcEEEeccHHH
Q 019931 104 FARQFKRLLLFSG---NDYLGLSSHPTIAKAAARHGM-GPRGSALICGYTNYHRLLESCLADLKKK---EDCLLCPTGFA 176 (334)
Q Consensus 104 ~~~~g~~~l~f~s---n~yLgl~~~p~v~~a~~~~g~-g~~~sr~~~G~~~~~~~LE~~La~~~g~---e~alv~~sG~~ 176 (334)
++.+|++||||++ +++||. +||+|++++.+.-. ....+.. +. .+...+|+++|+++++. +++++++||++
T Consensus 38 ~d~dg~~~lD~~s~~~~~~lG~-~~p~v~~ai~~~~~~~~~~~~~-~~-~~~~~~la~~l~~~~~~~~~~~v~~~~sgse 114 (398)
T PRK03244 38 WDVDGKEYLDLLGGIAVNALGH-AHPAVVEAVTRQLATLGHVSNL-FA-TEPQIALAERLVELLGAPEGGRVFFCNSGAE 114 (398)
T ss_pred EECCCCEEEECCcCHhhccCCC-CCHHHHHHHHHHHHhccCccCc-cC-CHHHHHHHHHHHHhCCCCCCCEEEEeCchHH
Confidence 3567799999998 688998 69999997754321 1111111 22 35568999999999875 47888899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc--------CCcEEEEeeCCCHHHHHHHHhc
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT--------KMVEVFVYKHCDMSHLKTLLSC 248 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~--------~g~~v~~~~~~D~~~Le~~l~~ 248 (334)
|+..+++.+..+ ++.++|..+..+|+.....+.+.... .+.++..++++|+++|++++.+
T Consensus 115 a~~~al~~~~~~------------g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 182 (398)
T PRK03244 115 ANEAAFKLARLT------------GRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVDD 182 (398)
T ss_pred HHHHHHHHHHHH------------CCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhcC
Confidence 999999976654 24578888888998877666443210 0134566788899999998853
Q ss_pred CCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEecCccc
Q 019931 249 CTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVGTLSKA 323 (334)
Q Consensus 249 ~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~SlsKa 323 (334)
++++|++|+++|++|.+.| +++|+++|++||++||+||+|+ | +|++|.++ .+++++.| |+ .||||+
T Consensus 183 ---~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g-~gr~g~~~~~~~~~~~p--Di--~t~sK~ 253 (398)
T PRK03244 183 ---DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQT-G-IGRTGAWFAHQHDGVTP--DV--VTLAKG 253 (398)
T ss_pred ---CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CcccchHHhhhhhCCCC--CE--EEEchh
Confidence 6899999999999999887 8999999999999999999998 5 78888765 34567666 44 489999
Q ss_pred ccC---CccEEe
Q 019931 324 AGC---QGGFIA 332 (334)
Q Consensus 324 ~G~---~GG~i~ 332 (334)
+|. .|++++
T Consensus 254 l~~G~~ig~~~~ 265 (398)
T PRK03244 254 LGGGLPIGACLA 265 (398)
T ss_pred hhCCcccEEEEE
Confidence 984 444443
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=202.34 Aligned_cols=215 Identities=18% Similarity=0.142 Sum_probs=154.4
Q ss_pred hcccceeEEEeecCccCCCC---CCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSGNDYLGLS---SHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~sn~yLgl~---~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
++.+|++||||+++ |.++. +||+|++++.+. .....+++... ++.+.+||++|+++.+.+++++++||++||+
T Consensus 36 ~d~~g~~~lD~~~~-~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e 112 (401)
T PRK00854 36 WDTDGNRYLDCLSA-YSAVNQGHCHPKILAAMVEQAGRLTLTSRAFR--NDQLAPLYEELAALTGSHKVLPMNSGAEAVE 112 (401)
T ss_pred EECCCCEEEEcCcc-hhhccCCCCCHHHHHHHHHHHhhccccccccC--CHHHHHHHHHHHhhCCCCEEEEeCCcHHHHH
Confidence 34677999998775 55444 389999976543 22222333332 4777999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhh--------hcCCcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE--------RTKMVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~--------~~~g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
++++++...+...+ ...+++.++|.++..+|+++...+.++. ......+..++++|+++|++++.+
T Consensus 113 ~al~~a~~~~~~~~---g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~--- 186 (401)
T PRK00854 113 TAIKAVRKWGYEVK---GVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPFGDAEALEAAITP--- 186 (401)
T ss_pred HHHHHHHHHHHhcc---CCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCCCCHHHHHHHhCC---
Confidence 99998754210000 0011235778888889998765543221 001235677899999999999864
Q ss_pred CcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccccC
Q 019931 252 RKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++|++|+++|++|.+.| |++|+++|++||++||+||+|+ | +|++|.++. +++++.+ |++ +++|+++.
T Consensus 187 ~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~-g-~g~~g~~~~~~~~g~~~--D~~--~~~K~l~g 260 (401)
T PRK00854 187 NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQT-G-LGRTGKLLAEEHEGIEA--DVT--LIGKALSG 260 (401)
T ss_pred CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCCCchHhHHhhcCCCC--CEE--EecccccC
Confidence 7899999999999999887 9999999999999999999997 5 677776553 3556655 555 46799953
Q ss_pred ---CccEEee
Q 019931 327 ---QGGFIAC 333 (334)
Q Consensus 327 ---~GG~i~~ 333 (334)
.+|+|++
T Consensus 261 g~~~ig~v~~ 270 (401)
T PRK00854 261 GFYPVSAVLS 270 (401)
T ss_pred CccCeEEEEE
Confidence 2455665
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-23 Score=205.18 Aligned_cols=218 Identities=21% Similarity=0.191 Sum_probs=153.2
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFA 176 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~ 176 (334)
.+|.+|++||||.++ ..||+ +||+|++|+++. ......++...+.++.+.+|+++|+++++ .+++++++||++
T Consensus 48 l~D~dG~~ylD~~~g~~~~~lGh-~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGse 126 (460)
T PRK12403 48 LWDNDGKRYLDGMSGLWCTNLGY-GRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSE 126 (460)
T ss_pred EEeCCCCEEEECchhHHhhcCCC-CCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHH
Confidence 457889999998764 45899 689999977543 22222344445667889999999999987 468999999999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC----C---cEEEEee------CC-C----
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK----M---VEVFVYK------HC-D---- 238 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~----g---~~v~~~~------~~-D---- 238 (334)
||.++++.+..-.. .+ +. .++..+|.....+|+++..++.++.... + ..+..++ ++ +
T Consensus 127 A~e~AiklAr~~~~-~~-g~---~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 201 (460)
T PRK12403 127 ANEVLIRTVRRYWQ-VL-GK---PQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPA 201 (460)
T ss_pred HHHHHHHHHHHHHH-hh-CC---CCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChH
Confidence 99999997643100 00 00 0012233345678999888887653110 0 0011211 11 1
Q ss_pred ------HHHHHHHHhc-CCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cc
Q 019931 239 ------MSHLKTLLSC-CTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQ 306 (334)
Q Consensus 239 ------~~~Le~~l~~-~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~ 306 (334)
+++|++.+.+ ...+..+|++|+++++.|.+.| |++|+++|++||++||+||+|+ | +|++|.+++ ++
T Consensus 202 ~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~t-G-fGRtG~~~a~e~ 279 (460)
T PRK12403 202 EFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIG-G-FGRTGEWFAHEH 279 (460)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCchhhhhhh
Confidence 3567666543 2246779999999999999887 9999999999999999999996 4 899999876 78
Q ss_pred cCCCCCccEEEecCccccc----CCccEEe
Q 019931 307 FNCERDVDICVGTLSKAAG----CQGGFIA 332 (334)
Q Consensus 307 ~~~~~~~Div~~SlsKa~G----~~GG~i~ 332 (334)
+++.| ||+ +|+|++| +.||+++
T Consensus 280 ~gv~P--Div--~~gK~lggG~~Piga~v~ 305 (460)
T PRK12403 280 FGFEP--DTL--SIAKGLTSGYVPMGGLVL 305 (460)
T ss_pred cCCCC--CeE--EEcccccccccceEEEEE
Confidence 99987 566 6999997 3566664
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-23 Score=200.23 Aligned_cols=216 Identities=19% Similarity=0.209 Sum_probs=156.8
Q ss_pred hcccceeEEEeecCccCCCC---CCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSGNDYLGLS---SHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~sn~yLgl~---~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
++.+|++||||+++ |.++. +||+|++++.+. ......++.+ .++.+.++|+.++++.+.+.+++++||++||.
T Consensus 26 ~d~dg~~~lD~~~~-~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~e 102 (400)
T PTZ00125 26 WDVEGKKYYDFLSA-YSAVNQGHCHPKILAALINQAQKLTLTSRAF--YNDVLGLAEKYITDLFGYDKVLPMNSGAEAGE 102 (400)
T ss_pred EeCCCCEEEEcccC-HhhccCCcCCHHHHHHHHHHHHhcccccccc--cCHHHHHHHHHHHhCCCCCEEEEeCCcHHHHH
Confidence 35678999999985 66555 699999977543 2222233433 25688999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC--------CcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK--------MVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~--------g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
++++.+...+. +. ....+++..+|..+..+|+.+...+.+..... ...+..++++|+++||++++. +
T Consensus 103 ~al~~~~~~~~--~~-~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~ 177 (400)
T PTZ00125 103 TALKFARKWGY--EV-KGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQD--P 177 (400)
T ss_pred HHHHHHHHHHH--hc-cCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCC--C
Confidence 99997643100 00 00001246788899999999888776552100 012456788999999999962 3
Q ss_pred CcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccccC
Q 019931 252 RKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++|++|+++|++|.+.| +++|.++|++||++||+||+|+ | +|++|.++. ++.++.+ |++ +|||+++.
T Consensus 178 ~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~-g-~g~~G~~~~~~~~~~~p--d~~--~~sK~l~~ 251 (400)
T PTZ00125 178 NVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQT-G-LGRTGKLLAHDHEGVKP--DIV--LLGKALSG 251 (400)
T ss_pred CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCccchhhHHHhcCCCC--CEE--EEcccccC
Confidence 6899999999999999888 9999999999999999999996 4 677777653 3455544 555 68999974
Q ss_pred Cc---cEEee
Q 019931 327 QG---GFIAC 333 (334)
Q Consensus 327 ~G---G~i~~ 333 (334)
.+ |++++
T Consensus 252 g~~~ig~v~~ 261 (400)
T PTZ00125 252 GLYPISAVLA 261 (400)
T ss_pred CCcCcEEEEE
Confidence 22 55654
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=198.34 Aligned_cols=199 Identities=15% Similarity=0.099 Sum_probs=163.0
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCcc-----ccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGS-----ALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIV 183 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~s-----r~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~ 183 (334)
.+++|+-.-.-+|- -++++++|+++|+.+.+++ ++..+..+.++++|+++|+++|.+.++++++|++||..++.
T Consensus 18 ~~~~~~~~~~~~~p-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~ 96 (387)
T PRK09331 18 EEFINLDPIQRGGI-LTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMH 96 (387)
T ss_pred ccccccChhhcCCC-CCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHH
Confidence 45667665555565 4788999999998765433 55666678899999999999999999999999999999999
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcC----CCC
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCC----TMR 252 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~----~~~ 252 (334)
+++++ ||.|+++...|.+...+++.. |++++.+++ .|++++++.+++. .++
T Consensus 97 ~l~~~--------------gd~Vlv~~~~h~s~~~~~~~~----G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~ 158 (387)
T PRK09331 97 SLCKK--------------GDYVVLDGLAHYTSYVAAERA----GLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKP 158 (387)
T ss_pred HhcCC--------------CCEEEECCCchHHHHHHHHHc----CCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCC
Confidence 88764 888999999999998887766 888888876 4799999998742 136
Q ss_pred cEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCC--ccE
Q 019931 253 KKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQ--GGF 330 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~--GG~ 330 (334)
+++|++++++|++|.+.|+++|.++|++||+++++|++|+.|.++..+. ..++|++++|++|++++. +||
T Consensus 159 ~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~--------~~g~D~~~~s~~K~l~~~~~~G~ 230 (387)
T PRK09331 159 PALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGK--------KLGADFIVGSGHKSMAASAPSGV 230 (387)
T ss_pred CEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHH--------HcCCCEEEeeCcccccCCCCEEE
Confidence 8999999999999999999999999999999999999999876543221 235789999999999763 378
Q ss_pred EeeC
Q 019931 331 IACR 334 (334)
Q Consensus 331 i~~~ 334 (334)
++++
T Consensus 231 l~~~ 234 (387)
T PRK09331 231 LATT 234 (387)
T ss_pred EEEC
Confidence 8764
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=202.14 Aligned_cols=204 Identities=18% Similarity=0.252 Sum_probs=146.9
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHh-C-CCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLK-K-KEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~-g-~e~alv~~sG~~A 177 (334)
++.+|++||||+++ .+||. +||+|.+|+.+. .....++.... .++.+.+|+++|++++ + .+.+++++||++|
T Consensus 38 ~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~a~~~q~~~~~~~~~~~~-~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA 115 (433)
T PRK08117 38 YGVDGKEYLDFTSGIAVANVGH-RHPKVVQAIKEQADKLMHGPSGVI-YYESILKLAEELAEITPGGLDCFFFSNSGAEA 115 (433)
T ss_pred EeCCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhccCcccccc-CCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHH
Confidence 45677999999885 56886 699999977543 22111111111 3577899999999998 3 3455666999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc----CC-----cEEEEeeC------------
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT----KM-----VEVFVYKH------------ 236 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~----~g-----~~v~~~~~------------ 236 (334)
|.++++.... .+++..+|..+..+|+++..++.+.... .. ..+..++.
T Consensus 116 ~e~AlklAr~-----------~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (433)
T PRK08117 116 IEGALKLAKH-----------VTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDP 184 (433)
T ss_pred HHHHHHHHHH-----------hcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCch
Confidence 9999995332 2345678888999999987766443100 00 01111111
Q ss_pred -----CCHHHHHHHHhc--CCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-
Q 019931 237 -----CDMSHLKTLLSC--CTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA- 304 (334)
Q Consensus 237 -----~D~~~Le~~l~~--~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~- 304 (334)
+|+++|++++++ ...+..+|++|+++++.|.+.| |++|+++|++||++||+||+|+ | +|++|.+++
T Consensus 185 ~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G-~gr~G~~~~~ 262 (433)
T PRK08117 185 EVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQT-G-FGRTGEWFAA 262 (433)
T ss_pred hHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-c-cCccccchhH
Confidence 256778888864 2246789999999999999988 9999999999999999999999 6 899998875
Q ss_pred cccCCCCCccEEEecCcccccC
Q 019931 305 EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 305 ~~~~~~~~~Div~~SlsKa~G~ 326 (334)
+++++.| || .||||++|.
T Consensus 263 ~~~gv~p--Di--~t~sK~lg~ 280 (433)
T PRK08117 263 QTFGVVP--DI--MTIAKGIAS 280 (433)
T ss_pred hhcCCCC--CE--eehhhhccC
Confidence 6778776 44 599999984
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=204.95 Aligned_cols=211 Identities=18% Similarity=0.164 Sum_probs=150.2
Q ss_pred hcccceeEEEeec---CccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC-C--CcEEEeccHHH
Q 019931 104 FARQFKRLLLFSG---NDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK-K--EDCLLCPTGFA 176 (334)
Q Consensus 104 ~~~~g~~~l~f~s---n~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g-~--e~alv~~sG~~ 176 (334)
+|.+||+||||++ +.+||. +||+|++|+++. ......+.+..+.++...+|+++|.+++. . +.+++++||++
T Consensus 84 ~D~dG~~ylD~~sg~~~~~lGh-~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsE 162 (504)
T PLN02760 84 YDINGKKYLDALAGLWCTALGG-SEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSE 162 (504)
T ss_pred EECCCCEEEEcCcCHHhcccCC-CCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHH
Confidence 5788999999988 689995 699999977653 33332233334567888999999999853 2 46788899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc-----CC-----cEEEEeeC--------CC
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT-----KM-----VEVFVYKH--------CD 238 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~-----~g-----~~v~~~~~--------~D 238 (334)
||.++++........ + + .+++.++|..+..+|+++..++.++... .+ .....+++ .+
T Consensus 163 A~e~AlKlAr~~~~~-~-g---~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 237 (504)
T PLN02760 163 ANDTQVKLVWYYNNA-L-G---RPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGET 237 (504)
T ss_pred HHHHHHHHHHHHHHh-c-C---CCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCc
Confidence 999999976421000 0 0 1134678889999999988887665210 00 11111111 01
Q ss_pred --------HHHHHHHHhcC-CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-c
Q 019931 239 --------MSHLKTLLSCC-TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-A 304 (334)
Q Consensus 239 --------~~~Le~~l~~~-~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~ 304 (334)
.++||+++... +.+..+|++|+++++.|.+.| |++|+++|++||++||+||+|+. +|++|.++ .
T Consensus 238 ~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TG--fGRtG~~~a~ 315 (504)
T PLN02760 238 EEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICA--FGRLGTMFGC 315 (504)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhC--CcccchhhHH
Confidence 24577777532 235789999999999999888 99999999999999999999963 67777765 4
Q ss_pred cccCCCCCccEEEecCcccccC
Q 019931 305 EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 305 ~~~~~~~~~Div~~SlsKa~G~ 326 (334)
+++++.|| | .||+|++|.
T Consensus 316 e~~gv~PD--i--vtlgK~lgg 333 (504)
T PLN02760 316 DKYNIKPD--L--VSLAKALSS 333 (504)
T ss_pred HhcCCCCc--E--EEecccccC
Confidence 78898874 4 489999963
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=199.85 Aligned_cols=216 Identities=21% Similarity=0.236 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHccccccccccccCCCCccccccCCCCCCCCcchhcccccccccceeeeechhhhhhhhcccCCCCCCc
Q 019931 9 KWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQISISDSTFQRWLHDVPSSGDEN 88 (334)
Q Consensus 9 ~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 88 (334)
...|+++.++.++++.||...|++++|+
T Consensus 8 ~~~d~~i~~~i~~e~~rq~~~ieLIASE---------------------------------------------------- 35 (413)
T COG0112 8 ADYDPEIFEAIQQELERQREHIELIASE---------------------------------------------------- 35 (413)
T ss_pred HhcCHHHHHHHHHHHHHHhhceeeeecc----------------------------------------------------
Confidence 4467889999999999999999999887
Q ss_pred ceeecCCCCCcccchhcccceeEEEeecCccCCCCCCHHHHH-----HHHHhcCCCCccccccCchHHHHHHHHH----H
Q 019931 89 EIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAK-----AAARHGMGPRGSALICGYTNYHRLLESC----L 159 (334)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~l~f~sn~yLgl~~~p~v~~-----a~~~~g~g~~~sr~~~G~~~~~~~LE~~----L 159 (334)
||.| |.|.+ .+++|..|.++.|++.|+ ++.+++|+. .
T Consensus 36 ------------------------N~~S---------~aV~~A~gS~ltnKYAEGyPgkRyYgGc-e~VD~vE~laiera 81 (413)
T COG0112 36 ------------------------NFTS---------PAVMEAQGSDLTNKYAEGYPGKRYYGGC-EYVDEVEELAIERA 81 (413)
T ss_pred ------------------------ccCC---------HHHHHHHhhhhhhccccCCCCccccCCC-eeHHHHHHHHHHHH
Confidence 5555 44444 457899999999999887 444666654 3
Q ss_pred HhHhCCCcEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchh-hHHHHHHhhhcCCcEEEEeeCC
Q 019931 160 ADLKKKEDCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHAS-IIDGIRIAERTKMVEVFVYKHC 237 (334)
Q Consensus 160 a~~~g~e~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s-~~~g~~ls~~~~g~~v~~~~~~ 237 (334)
.++||++.+-+. .||+.||++++.+|++| ||.|+...+.|+. +.++.+.+..+.-.+++.|+.+
T Consensus 82 k~LFga~~anVQPhSGs~AN~av~~All~p--------------GDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd 147 (413)
T COG0112 82 KKLFGAEYANVQPHSGSQANQAVYLALLQP--------------GDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVD 147 (413)
T ss_pred HHHhCCCccccCCCCchHHHHHHHHHHcCC--------------CCeEecccCCCCCcccCCCCCCccceeEEeEecccc
Confidence 448899999888 79999999999999986 8999988887765 4455444432223455556543
Q ss_pred ------CHHHHHHHHhcCCCCcEE-EEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC
Q 019931 238 ------DMSHLKTLLSCCTMRKKV-VVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE 310 (334)
Q Consensus 238 ------D~~~Le~~l~~~~~~~~l-Vv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~ 310 (334)
|+|++++++++. ++|+ |..-+.|+. ..|+++++++|++.|++|++|.||-.|++- .|. +.++.
T Consensus 148 ~et~~IDyD~~~k~a~e~--kPK~ii~G~SaY~r---~id~~~~reIad~VGA~L~~DmAHiaGLVA---~G~--~p~P~ 217 (413)
T COG0112 148 PETGLIDYDEVEKLAKEV--KPKLIIAGGSAYSR---PIDFKRFREIADEVGAYLMVDMAHVAGLIA---GGV--HPNPL 217 (413)
T ss_pred cccCccCHHHHHHHHHHh--CCCEEEECcccccc---ccCHHHHHHHHHHhCceEEehHHHHHHHHh---ccc--CCCCC
Confidence 999999999885 4554 556677766 889999999999999999999999999762 233 44666
Q ss_pred CCccEEEecCcccc-cCCccEEeeC
Q 019931 311 RDVDICVGTLSKAA-GCQGGFIACR 334 (334)
Q Consensus 311 ~~~Div~~SlsKa~-G~~GG~i~~~ 334 (334)
+.+||+++|.+|+| |+.||+|+++
T Consensus 218 ~~AdvVTtTTHKTlrGPrGG~Il~~ 242 (413)
T COG0112 218 PHADVVTTTTHKTLRGPRGGIILTN 242 (413)
T ss_pred CccceEeCCcccCCCCCCceEEEec
Confidence 78999999999999 8899999874
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-23 Score=204.51 Aligned_cols=196 Identities=18% Similarity=0.207 Sum_probs=132.3
Q ss_pred HHHhcCCCCccccccCchHHHHHHHH----HHHhHhCCCcEEEe-ccHHHHHHHHHHHHhhhh---hhc-cCCCcc----
Q 019931 132 AARHGMGPRGSALICGYTNYHRLLES----CLADLKKKEDCLLC-PTGFAANMAVIVAVGNIA---SLL-AGDEKS---- 198 (334)
Q Consensus 132 ~~~~g~g~~~sr~~~G~~~~~~~LE~----~La~~~g~e~alv~-~sG~~An~~ai~al~~~~---~~~-~~~~~~---- 198 (334)
..+|..|..+.|++.|+. ..+++|. +..++||++.+-+. .||+.||++++.++++|. ..| .+|++.
T Consensus 74 ~nkyaeg~pg~ryy~g~~-~~d~ie~l~~~ra~~lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~ 152 (493)
T PRK13580 74 TDKYAEGTPGHRFYAGCQ-NVDTVEWEAAEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDL 152 (493)
T ss_pred cccCcCCCCCccccCCCc-hHHHHHHHHHHHHHHHhCCCcccccCCCcHHHHHHHHHHHhcccccCcchhcccccccccc
Confidence 357888988889888874 4455554 44457899999777 799999999999998741 000 011000
Q ss_pred -------CCC--CCeEEEEcCCCchh-hHHHHHHhhhcCCcEEEEeeC------CCHHHHHHHHhcCCCCcEEEEEcCCC
Q 019931 199 -------FKD--EKIAIFSDALNHAS-IIDGIRIAERTKMVEVFVYKH------CDMSHLKTLLSCCTMRKKVVVTDSLF 262 (334)
Q Consensus 199 -------~~~--~gd~Vl~d~~~H~s-~~~g~~ls~~~~g~~v~~~~~------~D~~~Le~~l~~~~~~~~lVv~e~v~ 262 (334)
.+. .||.|+.-.+.|+. +..+...+..........|+. .|++++++++++ .++.|++.+.+
T Consensus 153 ~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~---~~plvii~g~S 229 (493)
T PRK13580 153 TEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALARE---FKPLILVAGYS 229 (493)
T ss_pred chhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHhh---cCCEEEEeCcc
Confidence 000 16788866554432 112211111111233444432 389999999986 44555555777
Q ss_pred CCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc-cCCccEEeeC
Q 019931 263 SMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQGGFIACR 334 (334)
Q Consensus 263 n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~-G~~GG~i~~~ 334 (334)
+. +...|+++|+++|++||++|++|+||++|++| |.+..+.+++.+++||+++|++|+| |+.||+|+++
T Consensus 230 ~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Glig--g~~~~~~~~~~~~~D~vtgT~hKaL~GP~GG~I~~~ 299 (493)
T PRK13580 230 AY-PRRVNFAKLREIADEVGAVLMVDMAHFAGLVA--GKVFTGDEDPVPHADIVTTTTHKTLRGPRGGLVLAK 299 (493)
T ss_pred cc-CCCcCHHHHHHHHHHcCCEEEEECchhhceec--cccchhhcCCCCCCcEEEeCChhhccCCCeEEEEec
Confidence 76 44889999999999999999999999999997 3333333444567999999999999 8899999874
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-22 Score=199.13 Aligned_cols=212 Identities=17% Similarity=0.163 Sum_probs=151.3
Q ss_pred hhcccceeEEEeecCccCCCC---CCHHHHHHHHH-hcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHH
Q 019931 103 TFARQFKRLLLFSGNDYLGLS---SHPTIAKAAAR-HGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAAN 178 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn~yLgl~---~~p~v~~a~~~-~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An 178 (334)
.++.+|++||||+|+ |..+. +||+|++|+++ .......++.+. ++...+|+++|+++++.+.+++++||++||
T Consensus 69 l~d~dG~~ylD~~sg-~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~~~~--~~~~~~la~~L~~~~~~~~~~f~~SGseA~ 145 (474)
T PLN02624 69 IWDPEGKKYLDFLSA-YSAVNQGHCHPKIIKALTEQAEKLTLSSRAFY--NDKFPEFAEYLTSMFGYDMVLPMNTGAEGV 145 (474)
T ss_pred EEECCCCEEEEcccc-hhcccCCCCCHHHHHHHHHHHHhcCCcccccC--CHHHHHHHHHHHhhcCCCeEEEeCChHHHH
Confidence 357889999999885 44333 49999997754 222222232222 577789999999999989999999999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc--------CCcEEEEeeCCCHHHHHHHHhcCC
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT--------KMVEVFVYKHCDMSHLKTLLSCCT 250 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~--------~g~~v~~~~~~D~~~Le~~l~~~~ 250 (334)
.++++.....+ .+. .....++..+|.....+|+.....+.++... ....+..++++|++.|+++++...
T Consensus 146 e~AlklAr~~~--~~~-~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 222 (474)
T PLN02624 146 ETAIKLARKWG--YEK-KGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDG 222 (474)
T ss_pred HHHHHHHHHHH--Hhh-cCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCCCHHHHHHHHHhCC
Confidence 99998543210 000 0000012345667777898766655543210 011245678899999999997544
Q ss_pred CCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCccccc
Q 019931 251 MRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G 325 (334)
.+.++|++|++++++|.+.| |++|+++|++||++||+||+|+ | +|++|.++. +++++.| ||+ +|||++|
T Consensus 223 ~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~t-G-~GrtG~~~a~~~~~i~p--Div--~lsK~lg 296 (474)
T PLN02624 223 DRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQT-G-LARTGKMLACDWEEVRP--DVV--ILGKALG 296 (474)
T ss_pred CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-cCcCcchhhHHhcCCCC--CEE--Eeccccc
Confidence 46889999999999999888 9999999999999999999997 6 788888765 4566655 555 6899997
Q ss_pred C
Q 019931 326 C 326 (334)
Q Consensus 326 ~ 326 (334)
+
T Consensus 297 g 297 (474)
T PLN02624 297 G 297 (474)
T ss_pred C
Confidence 4
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-22 Score=193.21 Aligned_cols=167 Identities=20% Similarity=0.114 Sum_probs=136.2
Q ss_pred cccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHH
Q 019931 142 SALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIR 221 (334)
Q Consensus 142 sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ 221 (334)
+.+.....+.+.+||+++++++|.+++++++||++|+..++.+++++ +|.|+++...|......+.
T Consensus 32 ~~y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~~--------------gd~Vl~~~~~y~~~~~~~~ 97 (369)
T cd00614 32 YIYSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKA--------------GDHVVASDDLYGGTYRLFE 97 (369)
T ss_pred ceeECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcCC--------------CCEEEECCCCcchHHHHHH
Confidence 44444456889999999999999999999999999999999988764 7888888877776554433
Q ss_pred HhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCc
Q 019931 222 IAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGG 301 (334)
Q Consensus 222 ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~ 301 (334)
......++++..++++|++++++++++ ++++|++|+++||+|.+.|+++|.++|++||++||+|++|+.+++..
T Consensus 98 ~~~~~~g~~~~~v~~~d~~~l~~~i~~---~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~--- 171 (369)
T cd00614 98 RLLPKLGIEVTFVDPDDPEALEAAIKP---ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQR--- 171 (369)
T ss_pred HHHhhcCeEEEEeCCCCHHHHHHhcCC---CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCC---
Confidence 211123788999999999999998864 68999999999999999999999999999999999999998875411
Q ss_pred ccccccCCCCCccEEEecCcccccC----CccEEeeC
Q 019931 302 GVAEQFNCERDVDICVGTLSKAAGC----QGGFIACR 334 (334)
Q Consensus 302 g~~~~~~~~~~~Div~~SlsKa~G~----~GG~i~~~ 334 (334)
.+..++||++.|++|++|+ .||+|+++
T Consensus 172 ------~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~ 202 (369)
T cd00614 172 ------PLELGADIVVHSATKYIGGHSDVIAGVVVGS 202 (369)
T ss_pred ------hhhhCCcEEEeccceeccCCCCceEEEEEeC
Confidence 1223578999999999974 47888874
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=192.11 Aligned_cols=205 Identities=20% Similarity=0.242 Sum_probs=150.7
Q ss_pred hhcccceeEEEeecC-ccCCCC-CCHHHHHHHHHh-cCCC-CccccccCchHHHHHHHHHHHhHhCC---CcEEEeccHH
Q 019931 103 TFARQFKRLLLFSGN-DYLGLS-SHPTIAKAAARH-GMGP-RGSALICGYTNYHRLLESCLADLKKK---EDCLLCPTGF 175 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn-~yLgl~-~~p~v~~a~~~~-g~g~-~~sr~~~G~~~~~~~LE~~La~~~g~---e~alv~~sG~ 175 (334)
.+|.+||+||||.+. +.+.+. +||+|++|++++ ..-. ..++..+ .+...++.++|.++... +.+++++||+
T Consensus 50 l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~~--~e~~v~~ae~L~~~~p~~~~~~~~f~~sGa 127 (447)
T COG0160 50 LYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLY--YEPYVELAEKLTALAPGSGLKKVFFGNSGA 127 (447)
T ss_pred EEeCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCCccc--chhHHHHHHHHHHhCCcccCCeEEecCCcH
Confidence 356888999999884 444454 599999998764 2222 2233333 36678899999998764 4577889999
Q ss_pred HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC---------CcEEEEeeCC---------
Q 019931 176 AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK---------MVEVFVYKHC--------- 237 (334)
Q Consensus 176 ~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~---------g~~v~~~~~~--------- 237 (334)
+||.++++.... .+++..+|..+..+|+.+...+.++.... ...++.++..
T Consensus 128 eA~E~AiKiAr~-----------~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~ 196 (447)
T COG0160 128 EAVEAAIKIARA-----------YTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGI 196 (447)
T ss_pred HHHHHHHHHHHH-----------HhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccC
Confidence 999999995433 34567888899999999988888764221 1113332211
Q ss_pred --------CHHHHHHHHhcC---CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcc
Q 019931 238 --------DMSHLKTLLSCC---TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG 302 (334)
Q Consensus 238 --------D~~~Le~~l~~~---~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g 302 (334)
..+.+|+.+... ..+...|++|++++..|.+.| |++|+++|++||++||+||+|+. +|++|+.
T Consensus 197 ~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG--~GRTG~~ 274 (447)
T COG0160 197 GGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTG--FGRTGKM 274 (447)
T ss_pred chhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC--CCccccc
Confidence 133456644432 246789999999999998766 89999999999999999999994 8999988
Q ss_pred cc-cccCCCCCccEEEecCcccccC
Q 019931 303 VA-EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 303 ~~-~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++ +|+++.| ||+ ||+|++|.
T Consensus 275 fa~E~~gv~P--Div--t~aK~ig~ 295 (447)
T COG0160 275 FAFEHFGVEP--DIV--TLAKSLGG 295 (447)
T ss_pred hhhhhcCCCC--CEE--EecccccC
Confidence 74 8999987 555 89999986
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=193.78 Aligned_cols=200 Identities=18% Similarity=0.202 Sum_probs=148.8
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHh-CCCcEEEeccHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLK-KKEDCLLCPTGFAAN 178 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~-g~e~alv~~sG~~An 178 (334)
++.+|++||||+++ .+||+ +||+|++++.+.- .+. . .....+...+|.++|+++. +.+++++++||++||
T Consensus 45 ~d~dG~~~lD~~~g~~~~~lGh-~~p~i~~a~~~~~~~~~-~---~~~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~ 119 (426)
T PRK00062 45 YDVDGNEYIDYVGSWGPMILGH-AHPEVVEAVIEAAEKGL-S---FGAPTELEVELAELVIELVPSIEMVRMVNSGTEAT 119 (426)
T ss_pred EeCCCCEEEEcccchhhhhcCC-CCHHHHHHHHHHHHhCC-c---CCCCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHH
Confidence 45778999999886 68999 7999999776543 322 1 1223566688999999876 467788999999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh---------cCC------cEEEEeeCCCHHHHH
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER---------TKM------VEVFVYKHCDMSHLK 243 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~---------~~g------~~v~~~~~~D~~~Le 243 (334)
.++++..... +++.++|..+..+|+........+.. ..+ .....++|+|+++++
T Consensus 120 e~Aik~a~~~-----------~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 188 (426)
T PRK00062 120 MSAIRLARGY-----------TGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVE 188 (426)
T ss_pred HHHHHHHHHH-----------hCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHH
Confidence 9999976542 23467888899999875322222100 001 124667889999999
Q ss_pred HHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCC-cccccccCCCCCccEEEe
Q 019931 244 TLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNG-GGVAEQFNCERDVDICVG 318 (334)
Q Consensus 244 ~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G-~g~~~~~~~~~~~Div~~ 318 (334)
+++++...++++|++|++++++|.++| |++|+++|++||+++|+||+|+ |+ ++| .+..+++++.|+ | .
T Consensus 189 ~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-G~--r~g~~~~~~~~~~~pD--i--~ 261 (426)
T PRK00062 189 ELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMT-GF--RVALGGAQGYYGVTPD--L--T 261 (426)
T ss_pred HHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechh-cc--ccCCccHHHHhCCCcc--h--H
Confidence 999754457889999999999999998 9999999999999999999998 53 333 344566777664 4 5
Q ss_pred cCcccccC
Q 019931 319 TLSKAAGC 326 (334)
Q Consensus 319 SlsKa~G~ 326 (334)
||||++|.
T Consensus 262 ~~gK~l~~ 269 (426)
T PRK00062 262 TLGKIIGG 269 (426)
T ss_pred hhhhHhhC
Confidence 89999974
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=192.57 Aligned_cols=206 Identities=18% Similarity=0.230 Sum_probs=153.4
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHH-hcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAAR-HGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFA 176 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~-~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~ 176 (334)
.+|.+|++||||.++ ..||. +||+|.+|+.+ .......++.. .++...+|.++|+++.+. +.+++++||++
T Consensus 69 l~D~dG~~ylD~~~g~~~~~lGh-~hp~v~~Av~~ql~~l~~~~~~~--~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsE 145 (442)
T TIGR03372 69 LIDTQGNEFIDCLGGFGIFNVGH-RNPNVIAAVENQLAKQPLHSQEL--LDPLRALLAKTLAALTPGKLKYSFFCNSGTE 145 (442)
T ss_pred EEECCCCEEEECCccHHhhhcCC-CCHHHHHHHHHHHHhCCCccccc--CCHHHHHHHHHHHHhCCCCcCEEEEeCCchH
Confidence 467889999999876 34676 58999998755 33333333332 257778999999998753 46778899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc---C-----CcEEEEeeCCCHHHHHHHHhc
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT---K-----MVEVFVYKHCDMSHLKTLLSC 248 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~---~-----g~~v~~~~~~D~~~Le~~l~~ 248 (334)
||.++++..... +. .+++..+|..+..+|+.....+.++... . ...+..++.+|.+.+++.+++
T Consensus 146 A~e~AlklAr~~----t~----~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~ 217 (442)
T TIGR03372 146 SVEAALKLAKAY----QS----PRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNE 217 (442)
T ss_pred HHHHHHHHHHHH----Hh----hcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHH
Confidence 999999954321 10 0134567778889999877666554210 0 122456677899998888864
Q ss_pred ---CCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEecC
Q 019931 249 ---CTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVGTL 320 (334)
Q Consensus 249 ---~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~Sl 320 (334)
...+..+|++|+++++.|.+.| |++|+++|++||++||+||+|+ | +|++|.++ .+++++.| ||+ ||
T Consensus 218 ~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~t-G-~GRtG~~~a~e~~gv~P--Div--t~ 291 (442)
T TIGR03372 218 CKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQT-G-MGRTGKMFACEHEGVQP--DIL--CL 291 (442)
T ss_pred HhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeeccc-C-CCccccchhhhhcCCCC--Cee--ee
Confidence 2246789999999999999888 9999999999999999999996 6 89999885 57889887 555 79
Q ss_pred ccccc
Q 019931 321 SKAAG 325 (334)
Q Consensus 321 sKa~G 325 (334)
+|++|
T Consensus 292 gK~lg 296 (442)
T TIGR03372 292 AKALG 296 (442)
T ss_pred hhhhc
Confidence 99997
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=193.74 Aligned_cols=214 Identities=20% Similarity=0.270 Sum_probs=157.2
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFA 176 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~ 176 (334)
.+|.+|++||||.++ ..||. +||+|.+|+.+. ......++.. .++...+|.++|+++.. .+.+++++||++
T Consensus 76 l~D~dG~~ylD~~~g~~~~~lGH-~~p~v~~Ai~~ql~~l~~~~~~~--~~~~~~~lae~L~~~~p~~~~~v~f~~SGsE 152 (459)
T PRK11522 76 LVDTQGQEFIDCLGGFGIFNVGH-RNPVVVSAVQNQLAKQPLHSQEL--LDPLRAMLAKTLAALTPGKLKYSFFCNSGTE 152 (459)
T ss_pred EEECCCCEEEECCcCHHhhhcCC-CCHHHHHHHHHHHhhCccccccc--CCHHHHHHHHHHHHhCCCCCCEEEEeCCchH
Confidence 467889999999886 45776 589999987553 3333333322 36777899999999875 356888899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC--------CcEEEEeeCCCHHHHHHHHhc
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK--------MVEVFVYKHCDMSHLKTLLSC 248 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~--------g~~v~~~~~~D~~~Le~~l~~ 248 (334)
||.++++..... ++ .+++..+|.....+|+.....+.++.... ...+..++.+|.+++++++++
T Consensus 153 Ave~AlklAr~~----t~----~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 224 (459)
T PRK11522 153 SVEAALKLAKAY----QS----PRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSE 224 (459)
T ss_pred HHHHHHHHHHHH----hc----cCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHH
Confidence 999999964331 11 01234677788889998765555442100 012345667899999998864
Q ss_pred C---CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEecC
Q 019931 249 C---TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVGTL 320 (334)
Q Consensus 249 ~---~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~Sl 320 (334)
. ..+..+|++|+++++.|.+.| |++|+++|++||++||+||+|+ | +|++|.++ ++++++.| ||+ ||
T Consensus 225 ~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t-G-~GRtG~~~a~e~~gv~P--Div--t~ 298 (459)
T PRK11522 225 CKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQT-G-MGRTGKMFACEHENVQP--DIL--CL 298 (459)
T ss_pred hhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEecccee-c-CCccchhhhhhccCCCC--CEE--Ee
Confidence 2 235689999999999999888 9999999999999999999996 6 79999875 57889887 555 89
Q ss_pred cccccC----CccEEee
Q 019931 321 SKAAGC----QGGFIAC 333 (334)
Q Consensus 321 sKa~G~----~GG~i~~ 333 (334)
+|++|. .|+++++
T Consensus 299 gK~lggG~~Pigav~~~ 315 (459)
T PRK11522 299 AKALGGGVMPIGATIAT 315 (459)
T ss_pred chhhhCCCccceeEEEc
Confidence 999973 5666653
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-21 Score=188.44 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+.+++||+++++++|.+.+++++||++|+..++.+++++ ||.|++....|.+....+.......|
T Consensus 60 ~p~~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~~~--------------Gd~Vi~~~~~y~~t~~~~~~~~~~~G 125 (390)
T PRK08133 60 NPTVTMFQERLAALEGAEACVATASGMAAILAVVMALLQA--------------GDHVVSSRSLFGSTVSLFEKIFARFG 125 (390)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCC--------------CCEEEEccCcchhHHHHHHHHHHHcC
Confidence 4778999999999999999999999999999999888764 78888888888775544321112238
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
++++.++..|++++++++++ ++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+++.. +
T Consensus 126 ~~v~~vd~~d~~~l~~~i~~---~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~---------p 193 (390)
T PRK08133 126 IETTFVDLTDLDAWRAAVRP---NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQ---------P 193 (390)
T ss_pred cEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCC---------c
Confidence 89999999999999998864 78999999999999999999999999999999999999998764421 1
Q ss_pred CCCCccEEEecCcccccC----CccEEeeC
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIACR 334 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~~ 334 (334)
+..++||++.|+||.+++ .||+|+++
T Consensus 194 l~~g~Divv~S~sK~~~g~g~~~GG~vv~~ 223 (390)
T PRK08133 194 LKLGADVVIHSATKYLDGQGRVLGGAVVGS 223 (390)
T ss_pred hhhCCcEEEeecceeecCCcceEeEEEEcC
Confidence 233568999999999976 46888763
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-21 Score=185.04 Aligned_cols=213 Identities=22% Similarity=0.268 Sum_probs=147.7
Q ss_pred hcccceeEEEeec---CccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSG---NDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~s---n~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
++.+|++||||++ ++|||+ +||.|.+++.+. ......++.+ ..+.+.+||++|++++|.+++++++||++|+.
T Consensus 22 ~~~~g~~~id~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~~ 98 (379)
T TIGR00707 22 YDVNGKEYLDFVAGIAVNSLGH-AHPKLVEALKEQLEKLVHVSNLY--YTEPQEELAEKLVEHSGADRVFFCNSGAEANE 98 (379)
T ss_pred EeCCCCEEEEcCcchhhccCCC-CCHHHHHHHHHHHhhcccccccc--CCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHH
Confidence 3467799999999 689998 689999866542 2221222322 35788999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc--------CCcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT--------KMVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~--------~g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
.+++++.... .+. ...++.+|+.+..+|............. ....+..++++|+++|++.+.+
T Consensus 99 ~a~~~~~~~~----~~~--~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~--- 169 (379)
T TIGR00707 99 AALKLARKYT----GDK--GKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDD--- 169 (379)
T ss_pred HHHHHHHHHh----hcc--CCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhh---
Confidence 9998653210 000 0002455666777887765554332100 0122345667899999998864
Q ss_pred CcEEEEEcCCCCCCCCcc-C---HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccccC
Q 019931 252 RKKVVVTDSLFSMDGDFA-P---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~-p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++|+++++++++|... + +++|.++|+++|+++|+||+|+ + +|++|.+.. ...++.+ |++ ||||+++.
T Consensus 170 ~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~-~-~~~~g~~~~~~~~~~~~--d~~--t~sK~~~~ 243 (379)
T TIGR00707 170 ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQT-G-IGRTGKFFAYEHYGIEP--DII--TLAKGLGG 243 (379)
T ss_pred CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCccchhhhHHhcCCCC--CEE--EEcccccC
Confidence 678999999998888643 2 8999999999999999999997 4 566565432 3345444 444 89999983
Q ss_pred --CccEEeeC
Q 019931 327 --QGGFIACR 334 (334)
Q Consensus 327 --~GG~i~~~ 334 (334)
..|+++++
T Consensus 244 G~riG~~~~~ 253 (379)
T TIGR00707 244 GVPIGATLAK 253 (379)
T ss_pred CcccEEEEEc
Confidence 23777653
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-21 Score=183.54 Aligned_cols=185 Identities=17% Similarity=0.136 Sum_probs=148.4
Q ss_pred CCHHHHHHHHHhcCCCCccccccCc-----hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCcc
Q 019931 124 SHPTIAKAAARHGMGPRGSALICGY-----TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKS 198 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G~-----~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~ 198 (334)
-.|.+++++++|+.|.++++...+. .+.+.++++++++++|.+++++++++++++..++.+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~~~---------- 82 (361)
T cd06452 13 LTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLCEK---------- 82 (361)
T ss_pred CCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhcCC----------
Confidence 4788999999999888777653332 3678999999999999988999999999999999887654
Q ss_pred CCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCC----CCcEEEEEcCCCCCCCC
Q 019931 199 FKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCT----MRKKVVVTDSLFSMDGD 267 (334)
Q Consensus 199 ~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~----~~~~lVv~e~v~n~~G~ 267 (334)
||.|+++...|.+....++.. |++++.++. .|+++|++++++.. +++++|++++++|++|.
T Consensus 83 ----gd~Vl~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~ 154 (361)
T cd06452 83 ----GDWVVVDGLAHYTSYVAAERA----GLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGN 154 (361)
T ss_pred ----CCEEEEcCCcchHHHHHHHhc----CCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCee
Confidence 788999888898887666555 788877753 37889998886421 26789999999999999
Q ss_pred ccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCC--ccEEeeC
Q 019931 268 FAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQ--GGFIACR 334 (334)
Q Consensus 268 ~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~--GG~i~~~ 334 (334)
+.|+++|.++|+++|+++++|+||+.|.+...+ ...++|++++|++|++++. +||++++
T Consensus 155 ~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~--------~~~~~d~~~~s~~K~l~~~~~~G~l~~~ 215 (361)
T cd06452 155 LHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSG--------KELGADFIVGSGHKSMAASAPIGVLATT 215 (361)
T ss_pred eccHHHHHHHHHHcCCeEEEECCcccCCcCCCH--------HHcCCCEEEecCCccccCCCCeEEEEEC
Confidence 999999999999999999999999976432111 1234689999999999753 4888764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=183.77 Aligned_cols=212 Identities=21% Similarity=0.257 Sum_probs=151.9
Q ss_pred hcccceeEEEeec---CccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSG---NDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~s---n~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
++.+|++||||++ +++||. +||.+.+++.+. ......+. .+..+...+|+++|+++.+.+++++++||++|+.
T Consensus 34 ~d~dg~~~iD~~~g~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~~~~v~~~~gg~eA~~ 110 (396)
T PRK02627 34 WDDDGKEYLDFLAGIAVNNLGH-CHPKLVEAIQEQAAKLIHTSN--LYYIEPQEELAEKLVELSGMDKVFFCNSGAEANE 110 (396)
T ss_pred EeCCCCEEEECCccHHhccCCC-CCHHHHHHHHHHHhhcccccc--ccCCHHHHHHHHHHHhhcCCCEEEECCCcHHHHH
Confidence 4567899999988 578888 589999977653 22222222 1236888999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc--------CCcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT--------KMVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~--------~g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
.+++++...+. +...++..+|..+..+|+....++...... ....+..++++|+++|++++.+
T Consensus 111 ~al~~a~~~~~------~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~--- 181 (396)
T PRK02627 111 AAIKLARKYGH------KKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITD--- 181 (396)
T ss_pred HHHHHHHHHhc------ccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhcCC---
Confidence 99997765421 001112456778888998776665543100 0112356778899999999853
Q ss_pred CcEEEEEcCCCCCCCC-ccC---HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEecCcccccC
Q 019931 252 RKKVVVTDSLFSMDGD-FAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~-~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++|++++++|++|. +.| +++|+++|++||++||+||+|+ | +|++|.+. .+.+++.+ |+ .||||++|+
T Consensus 182 ~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~-g-~g~~g~~~~~~~~~~~p--di--~t~sK~~~~ 255 (396)
T PRK02627 182 KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQT-G-MGRTGKLFAYQHYGIEP--DI--MTLAKGLGG 255 (396)
T ss_pred CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhc-C-CCccCceeeehhcCCCC--CE--EEEcchhhC
Confidence 7899999999999884 333 8999999999999999999998 4 57766543 23556555 44 489999983
Q ss_pred --CccEEee
Q 019931 327 --QGGFIAC 333 (334)
Q Consensus 327 --~GG~i~~ 333 (334)
.-|++++
T Consensus 256 G~rig~~~~ 264 (396)
T PRK02627 256 GVPIGAVLA 264 (396)
T ss_pred CcccEEEEE
Confidence 1255554
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-21 Score=185.17 Aligned_cols=204 Identities=21% Similarity=0.249 Sum_probs=145.8
Q ss_pred hcccceeEEEeecC-ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHh-CC-C-cEEEeccHHHHH
Q 019931 104 FARQFKRLLLFSGN-DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLK-KK-E-DCLLCPTGFAAN 178 (334)
Q Consensus 104 ~~~~g~~~l~f~sn-~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~-g~-e-~alv~~sG~~An 178 (334)
++.+|++||||.|+ .|+++.+||+|++++.+.- .... ++ ...+.++++++++.+ +. + .+++++||++||
T Consensus 24 ~d~dg~~~lD~~s~~~~~~lG~~p~v~~a~~~~~~~~~~-~~-----~~~~~~~~~~la~~l~~~~~~~~~~~~SGseA~ 97 (375)
T PRK04260 24 IDTDGKKYLDFSSGIGVTNLGFHPQVQQALQKQAGLIWH-SP-----NLYLNSLQEEVAQKLIGDKDYLAFFCNSGAEAN 97 (375)
T ss_pred EeCCCCEEEECCCCcccccCCCCHHHHHHHHHHHHhcCc-cc-----CccCCHHHHHHHHHHhcCcCCEEEEcCccHHHH
Confidence 45677999999987 6899999999999775432 2111 11 123355666666644 32 2 357789999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC-----C--c-EEEEeeCCCHHHHHHHHhcCC
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK-----M--V-EVFVYKHCDMSHLKTLLSCCT 250 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~-----g--~-~v~~~~~~D~~~Le~~l~~~~ 250 (334)
..+++.+... +++..+|..+..+|+++..++.++.... + . .+...+++|++++++++.+
T Consensus 98 ~~Al~~ar~~-----------~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~l~~-- 164 (375)
T PRK04260 98 EAAIKIARKA-----------TGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALVNK-- 164 (375)
T ss_pred HHHHHHHHHh-----------cCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHHhcCC--
Confidence 9999876431 2346778889999999888776542110 0 0 1222347899999998853
Q ss_pred CCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCccccc
Q 019931 251 MRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G 325 (334)
++++|++|++++++|.+.| |++|.++|+++|+++|+||+|. | +|++|.++. +.+++.|+ | .||||++|
T Consensus 165 -~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~-g-~g~~g~~~~~~~~~~~pd--i--~t~sK~l~ 237 (375)
T PRK04260 165 -NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQT-G-MGRTGKLYAFEHYGIEPD--I--FTLAKGLA 237 (375)
T ss_pred -CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCcccchhhhHhhCCCCC--E--EEeccccc
Confidence 6789999999999998766 8999999999999999999997 6 788886643 45677664 4 49999997
Q ss_pred C--CccEEee
Q 019931 326 C--QGGFIAC 333 (334)
Q Consensus 326 ~--~GG~i~~ 333 (334)
+ ..|++++
T Consensus 238 ~G~~ig~~~~ 247 (375)
T PRK04260 238 NGVPVGAMLA 247 (375)
T ss_pred CCcceEEEEE
Confidence 3 3355554
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-21 Score=188.25 Aligned_cols=207 Identities=18% Similarity=0.213 Sum_probs=149.0
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~A 177 (334)
+|.+|++||||.++ ..||. +||+|.+|+++.- .+.. ..-.++...+|.++|.+..+. +++.+++||++|
T Consensus 48 ~D~dG~~yiD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~----~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA 122 (433)
T PRK00615 48 IDSLGKTFIDFCGSWGSLIHGH-SHPKICDAIQQGAERGTS----YGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEA 122 (433)
T ss_pred EECCCCEEEEcccchhccccCC-CCHHHHHHHHHHHHhCCC----CCCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHH
Confidence 56788999999775 34676 4999999876542 2221 112356778899999998764 478888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhh---HHHHHHhhhc------------CCcEEEEeeCCCHHHH
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASI---IDGIRIAERT------------KMVEVFVYKHCDMSHL 242 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~---~~g~~ls~~~------------~g~~v~~~~~~D~~~L 242 (334)
+..+++.... .+++..+|.....+|+.. ..++.+.... .......++|+|+++|
T Consensus 123 ~e~AiklAr~-----------~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (433)
T PRK00615 123 TMTAVRLARG-----------ITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIF 191 (433)
T ss_pred HHHHHHHHHH-----------hhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHH
Confidence 9999996433 234566777788889854 3332222100 0112345678999999
Q ss_pred HHHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCc-ccccccCCCCCccEEE
Q 019931 243 KTLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGG-GVAEQFNCERDVDICV 317 (334)
Q Consensus 243 e~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~-g~~~~~~~~~~~Div~ 317 (334)
++++++...+..+|++|+++++.|++.| +++|+++|++||++||+||+|. |+ ++|. |..+++++.| ||+
T Consensus 192 ~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~--R~G~~ga~~~~gv~P--Di~- 265 (433)
T PRK00615 192 QTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GF--RVAQGGAAAIYHVKP--DIT- 265 (433)
T ss_pred HHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-cc--cccHhHHHHhcCCCC--CeE-
Confidence 9999765456789999999999999888 5699999999999999999995 64 4454 3457888877 454
Q ss_pred ecCcccccC--CccEEee
Q 019931 318 GTLSKAAGC--QGGFIAC 333 (334)
Q Consensus 318 ~SlsKa~G~--~GG~i~~ 333 (334)
+|+|++|. .+|+|++
T Consensus 266 -~~gK~lggG~p~~av~~ 282 (433)
T PRK00615 266 -VYGKILGGGLPAAAVVA 282 (433)
T ss_pred -EEcccccCCcceeeeee
Confidence 69999973 3666665
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=187.98 Aligned_cols=210 Identities=16% Similarity=0.210 Sum_probs=152.1
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFA 176 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~ 176 (334)
.+|.+|++||||.++ ..||. +||+|.+|+.+. ..+...+... .++...+|.++|+++.+ .+++++++||++
T Consensus 47 l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~~~~~~--~~~~~~~lae~L~~~~p~~~~~v~f~~SGsE 123 (451)
T PRK06062 47 VWDYEGRRYLDFSSQLVNTNIGH-QHPKVVAAIQEQAARLCTVAPAH--ANDARSEAARLIAERAPGDLSKVFFTNGGAD 123 (451)
T ss_pred EEECCCCEEEEcccCHHhhcCCC-CCHHHHHHHHHHHHhcCCcCCcc--CCHHHHHHHHHHHHhCCCCCCEEEEcCChHH
Confidence 356888999999875 45777 589999977543 3332222222 25777899999999875 467888899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC---------CcEEEEee------C---CC
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK---------MVEVFVYK------H---CD 238 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~---------g~~v~~~~------~---~D 238 (334)
|+.++++.... .+++..+|.....+|+.....+.++.... +.....++ . +|
T Consensus 124 Ave~AlklAr~-----------~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 192 (451)
T PRK06062 124 ANEHAVRMARL-----------HTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTE 192 (451)
T ss_pred HHHHHHHHHHH-----------hhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCCh
Confidence 99999996433 23456777788889998776665542100 11111111 1 23
Q ss_pred -------HHHHHHHHhcC-CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-cc
Q 019931 239 -------MSHLKTLLSCC-TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AE 305 (334)
Q Consensus 239 -------~~~Le~~l~~~-~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~ 305 (334)
+++|+++++.. +.+..+|++|+++++.|.+.| |++|+++|++||++||+||+|+ | +|++|.++ .+
T Consensus 193 ~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~t-G-fGRtG~~~a~~ 270 (451)
T PRK06062 193 EEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMA-G-FGRTGKWFAIE 270 (451)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeecccc-C-CCcCcHHHHHH
Confidence 67888888643 235789999999999999988 9999999999999999999998 4 89999886 47
Q ss_pred ccCCCCCccEEEecCcccccC----CccEEe
Q 019931 306 QFNCERDVDICVGTLSKAAGC----QGGFIA 332 (334)
Q Consensus 306 ~~~~~~~~Div~~SlsKa~G~----~GG~i~ 332 (334)
++++.| ||+ ||+|++|. .|+++.
T Consensus 271 ~~gv~P--Di~--t~gK~lggG~~Pigav~~ 297 (451)
T PRK06062 271 HFGVVP--DLI--TFAKGVNSGYVPLGGVAI 297 (451)
T ss_pred hcCCCC--Cee--eechhhhcCCcCcEEEEE
Confidence 899987 444 89999974 556554
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=187.77 Aligned_cols=203 Identities=16% Similarity=0.183 Sum_probs=145.8
Q ss_pred hhcccceeEEEeecCccCCCC-CCHHHHHHHHHh-cCCCC-ccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHH
Q 019931 103 TFARQFKRLLLFSGNDYLGLS-SHPTIAKAAARH-GMGPR-GSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAA 177 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn~yLgl~-~~p~v~~a~~~~-g~g~~-~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~A 177 (334)
.++.+|++||||+++.++.|. +||+|++|+.+. ..... .+++ .++...+|+++|+++.+. +.+++++||++|
T Consensus 66 l~D~dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~---~~~~~~~lae~L~~~~p~~~~~v~f~~sGseA 142 (459)
T PRK06082 66 IEDVDGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPFSPRRF---TNETAIECAEKLTEIAGGELNRVLFAPGGTSA 142 (459)
T ss_pred EEECCCCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCCccCcc---CCHHHHHHHHHHHHhCCCCCCEEEECCCcHHH
Confidence 357889999999987774444 799999977543 22211 1222 257789999999999863 567788999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc----------CCcEEEE--------eeCCC-
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT----------KMVEVFV--------YKHCD- 238 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~----------~g~~v~~--------~~~~D- 238 (334)
+.++++.... .+++..+|.....+|+....++.++... .+...+. +.++|
T Consensus 143 ve~AlklAr~-----------~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (459)
T PRK06082 143 IGMALKLARH-----------ITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADG 211 (459)
T ss_pred HHHHHHHHHH-----------hcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhH
Confidence 9999986443 1334667777888899887777655210 0011111 11112
Q ss_pred -----HHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCC
Q 019931 239 -----MSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNC 309 (334)
Q Consensus 239 -----~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~ 309 (334)
+++|++++++. .+..+|++|+++++++.++| |++|+++|++||++||+||+|+ | +|++|.+++ +++++
T Consensus 212 ~~~~~~~~l~~~i~~~-~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~t-G-~GRtG~~fa~e~~gv 288 (459)
T PRK06082 212 SDVHYADYLEYVIEKE-GGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPN-G-MGRTGEWFTHQAYGI 288 (459)
T ss_pred HHHHHHHHHHHHHhcC-CCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCccchhhHhHhhCC
Confidence 35578888643 36789999999998666666 9999999999999999999998 5 799998865 78898
Q ss_pred CCCccEEEecCcccccC
Q 019931 310 ERDVDICVGTLSKAAGC 326 (334)
Q Consensus 310 ~~~~Div~~SlsKa~G~ 326 (334)
.| ||+ +|+|++|.
T Consensus 289 ~P--Div--~~gKgl~g 301 (459)
T PRK06082 289 EP--DIL--CIGKGLGG 301 (459)
T ss_pred CC--CEE--EecccccC
Confidence 87 566 69999973
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=184.69 Aligned_cols=159 Identities=20% Similarity=0.216 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEE-cCCCchhhHHHHHHhhhcC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFS-DALNHASIIDGIRIAERTK 227 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~-d~~~H~s~~~g~~ls~~~~ 227 (334)
+|.+..||++||++.|.+++++++||++|+..++.+++++ ||.|++ +..++++. .-+.......
T Consensus 49 nPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~--------------GD~Vl~~~~~y~~t~-~~~~~~~~~~ 113 (377)
T TIGR01324 49 TLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKA--------------GDHVLMVDSAYEPTR-YFCDIVLKRM 113 (377)
T ss_pred CccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCC--------------CCEEEEcCCCcHHHH-HHHHHHHHhc
Confidence 3778999999999999999999999999999999988765 666765 44444432 2211111122
Q ss_pred CcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCccccccc
Q 019931 228 MVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 228 g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
+.++..++..+.+++++++++ ++++|++++++|++|.+.|+++|+++|+++|+++|+|++|+.|++.+
T Consensus 114 gi~v~~~d~~~~e~l~~~i~~---~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~--------- 181 (377)
T TIGR01324 114 GVDITYYDPLIGEDIATLIQP---NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFK--------- 181 (377)
T ss_pred CcEEEEECCCCHHHHHHhcCC---CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccC---------
Confidence 677777776666788888764 79999999999999999999999999999999999999999886532
Q ss_pred CCCCCccEEEecCcccccC----CccEEeeC
Q 019931 308 NCERDVDICVGTLSKAAGC----QGGFIACR 334 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~----~GG~i~~~ 334 (334)
++..++||+++|++|.+|+ .||+|+++
T Consensus 182 pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~ 212 (377)
T TIGR01324 182 PLEHGVDISIQAGTKYLVGHSDIMIGTVVAN 212 (377)
T ss_pred ccccCceEEEecCceeccCCCCceEEEEEeC
Confidence 2345689999999999975 46777653
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=185.76 Aligned_cols=158 Identities=18% Similarity=0.158 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+.+++||++|+++.|.+.+++|+||++|+.+++.+++++ ||.|++....|..+...+.......+
T Consensus 68 ~p~~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~all~~--------------Gd~Vv~~~~~y~~t~~~~~~~l~~~G 133 (436)
T PRK07812 68 NPTQDVVEQRIAALEGGVAALLLASGQAAETFAILNLAGA--------------GDHIVSSPRLYGGTYNLFHYTLPKLG 133 (436)
T ss_pred CchHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhCC--------------CCEEEEeCCcchHHHHHHHHHhhcCe
Confidence 4778899999999999999999999999999999888765 77777766666665443332112236
Q ss_pred cEEEEee-CCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCccccccc
Q 019931 229 VEVFVYK-HCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 229 ~~v~~~~-~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
++++.++ ..|++++++++++ ++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+++. .
T Consensus 134 i~v~~vdd~~d~e~l~~ai~~---~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~---------~ 201 (436)
T PRK07812 134 IEVSFVEDPDDLDAWRAAVRP---NTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLI---------R 201 (436)
T ss_pred EEEEEECCCCCHHHHHHhCCC---CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccC---------C
Confidence 7777774 4577888877753 7899999999999999999999999999999999999999876442 1
Q ss_pred CCCCCccEEEecCcccccCCccEEe
Q 019931 308 NCERDVDICVGTLSKAAGCQGGFIA 332 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~~GG~i~ 332 (334)
.+..++|+++.|++|.+|+.|++++
T Consensus 202 pl~~GaDivv~S~tK~lgg~G~~i~ 226 (436)
T PRK07812 202 PLEHGADIVVHSATKYLGGHGTAIA 226 (436)
T ss_pred chhcCCCEEEEecccccCCCCCeEE
Confidence 2345689999999999998775444
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=183.74 Aligned_cols=160 Identities=18% Similarity=0.133 Sum_probs=131.0
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||++||++.|.+++++++||+.|+..++.+++.+ ||.|++....|..............|
T Consensus 69 ~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~--------------Gd~Vl~~~~~~~~t~~~~~~~~~~~G 134 (403)
T PRK07810 69 NPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGA--------------GDRLVAARSLFGSCFVVCNEILPRWG 134 (403)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCC--------------CCEEEEccCCcchHHHHHHHHHHHcC
Confidence 3667999999999999999999999999999999888764 77888777666554433322112238
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
++++.++..|++++++++++ ++++|++|+++||+|.+.|+++|.++|+++|+++|+|++|+.+++.. +
T Consensus 135 ~~v~~vd~~d~~~l~~ai~~---~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~---------~ 202 (403)
T PRK07810 135 VETVFVDGEDLSQWEEALSV---PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQR---------G 202 (403)
T ss_pred cEEEEECCCCHHHHHHhcCc---CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCC---------h
Confidence 89999999999999999875 78999999999999999999999999999999999999999875421 1
Q ss_pred CCCCccEEEecCcccccCC----ccEEeeC
Q 019931 309 CERDVDICVGTLSKAAGCQ----GGFIACR 334 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~~----GG~i~~~ 334 (334)
+..++||++.|++|.+++. ||+|+++
T Consensus 203 ~~~gaDivv~S~tK~l~g~g~~~gG~v~~~ 232 (403)
T PRK07810 203 LPLGADVVVYSGTKHIDGQGRVLGGAILGD 232 (403)
T ss_pred hhcCCcEEEccCCceecCCcCceeEEEEeC
Confidence 2335799999999999753 6888764
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=186.48 Aligned_cols=205 Identities=17% Similarity=0.201 Sum_probs=148.7
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC-CCcEEEeccHHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK-KEDCLLCPTGFAA 177 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g-~e~alv~~sG~~A 177 (334)
.+|.+|++||||.++ ..||. +||+|.+++++. ..+.. ....++...+|.++|++... .+.+.+++||++|
T Consensus 93 l~D~dG~~yiD~~~g~g~~~lGh-~~p~v~~av~~ql~~~~~----~~~~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA 167 (474)
T PLN02482 93 AWDVDGNEYIDYVGSWGPAIIGH-ADDEVLAALAETMKKGTS----FGAPCLLENVLAEMVIDAVPSVEMVRFVNSGTEA 167 (474)
T ss_pred EEECCCCEEEEecccccccccCC-CCHHHHHHHHHHHhhCCC----CCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHH
Confidence 468899999999775 34777 489999987553 33321 12235666788999998875 5788889999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHH--h-------hhcCC------cEEEEeeCCCHHHH
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRI--A-------ERTKM------VEVFVYKHCDMSHL 242 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~l--s-------~~~~g------~~v~~~~~~D~~~L 242 (334)
++.+++.... .+++..+|.....+|+..-..... . ....+ ..++.+++||+++|
T Consensus 168 ~e~AlklAR~-----------~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l 236 (474)
T PLN02482 168 CMGVLRLARA-----------YTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAV 236 (474)
T ss_pred HHHHHHHHHH-----------hcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHH
Confidence 9999986433 234566777788888853110000 0 00001 24567889999999
Q ss_pred HHHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEE
Q 019931 243 KTLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICV 317 (334)
Q Consensus 243 e~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~ 317 (334)
++++++...+..+|++|+++++.|.+.| |++|+++|++||++||+||+|. |+ +.|.+. .+++++.|+ |
T Consensus 237 ~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-Gf--R~g~~ga~~~~gv~PD--i-- 309 (474)
T PLN02482 237 KKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GF--RIAYGGAQEYFGITPD--L-- 309 (474)
T ss_pred HHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Ce--ecCcchHhHHhCCCCC--E--
Confidence 9999765456789999999999998887 6789999999999999999995 64 445444 467898774 5
Q ss_pred ecCcccccC---CccE
Q 019931 318 GTLSKAAGC---QGGF 330 (334)
Q Consensus 318 ~SlsKa~G~---~GG~ 330 (334)
.||+|++|. .|++
T Consensus 310 ~t~gK~lggG~Pigav 325 (474)
T PLN02482 310 TTLGKVIGGGLPVGAY 325 (474)
T ss_pred EEecchhhCCCceEEE
Confidence 489999974 4555
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-20 Score=183.88 Aligned_cols=206 Identities=18% Similarity=0.155 Sum_probs=151.9
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC-CCcEEEeccHHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK-KEDCLLCPTGFAA 177 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g-~e~alv~~sG~~A 177 (334)
.+|.+|++||||.+. ..+|. +||+|.+|+.+. ..+.. ..-.++...+|.++|++..+ .+++++++||++|
T Consensus 47 l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~----~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA 121 (428)
T PRK12389 47 FYDVDGNKYIDYLAAYGPIITGH-AHPHITKAITEAAENGVL----YGTPTELEIEFAKMLKEAIPSLEKVRFVNSGTEA 121 (428)
T ss_pred EEeCCCCEEEEccccccccccCC-CCHHHHHHHHHHHHhCCc----cCCCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHH
Confidence 356888999999764 34666 589999977543 33321 11235777889999988774 5678888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc---------------CCcEEEEeeCCCHHHH
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT---------------KMVEVFVYKHCDMSHL 242 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~---------------~g~~v~~~~~~D~~~L 242 (334)
+..+++.... .+++..+|.....+|+.....+.++... ....+..++++|++.|
T Consensus 122 ~e~AlklAr~-----------~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 190 (428)
T PRK12389 122 VMTTIRVARA-----------YTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEAL 190 (428)
T ss_pred HHHHHHHHHH-----------hhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHH
Confidence 9999996443 2345667778888998765554443100 0124567788999999
Q ss_pred HHHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEE
Q 019931 243 KTLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICV 317 (334)
Q Consensus 243 e~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~ 317 (334)
++++++...+..+|++|+++++.|.+.| |++|+++|++||++||+||+|+. + +++.+. .+++++.|| |+
T Consensus 191 ~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG--~-Rt~~~~a~~~~gv~PD--iv- 264 (428)
T PRK12389 191 KEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITA--F-RFMYGGAQDLLGVEPD--LT- 264 (428)
T ss_pred HHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccc--c-ccCcchhhHHhCCCCC--ee-
Confidence 9999765456789999999999999888 99999999999999999999984 3 555543 467898774 54
Q ss_pred ecCcccccC---CccEE
Q 019931 318 GTLSKAAGC---QGGFI 331 (334)
Q Consensus 318 ~SlsKa~G~---~GG~i 331 (334)
||+|++|. .|+++
T Consensus 265 -t~gK~lggG~Pi~av~ 280 (428)
T PRK12389 265 -ALGKIIGGGLPIGAYG 280 (428)
T ss_pred -eechhhcCCCceeEEe
Confidence 89999975 45553
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=184.12 Aligned_cols=210 Identities=19% Similarity=0.188 Sum_probs=147.2
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhcC--CCCccccccCchHHHHHHHHHHHhHhC----CC-cEEEe-c
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHGM--GPRGSALICGYTNYHRLLESCLADLKK----KE-DCLLC-P 172 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g~--g~~~sr~~~G~~~~~~~LE~~La~~~g----~e-~alv~-~ 172 (334)
+|.+|++||||.+. ..||. +||+|.+|+++.-. +.... ..-.++...+|.++|++... .+ .++++ +
T Consensus 34 ~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~~--~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~ 110 (425)
T PRK09264 34 YDEDGKEYIDFFAGAGALNYGH-NNPVLKQALIDYLQRDGITHG--LDMHTTAKREFLETFEETILKPRGLDYKVQFTGP 110 (425)
T ss_pred EeCCCCEeeecccchhhccCCC-CCHHHHHHHHHHHHhcccccc--cccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCC
Confidence 46778999999875 45777 59999998865322 21111 11135667889999988642 33 45565 7
Q ss_pred cHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc-----CC---cEEEEeeC--------
Q 019931 173 TGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT-----KM---VEVFVYKH-------- 236 (334)
Q Consensus 173 sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~-----~g---~~v~~~~~-------- 236 (334)
||++||.++++.... .+++..+|.....+|+.....+.++... .+ ..+..++.
T Consensus 111 sGseA~e~AlklAr~-----------~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 179 (425)
T PRK09264 111 TGTNAVEAALKLARK-----------VTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDV 179 (425)
T ss_pred CHHHHHHHHHHHHHH-----------hcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccch
Confidence 999999999996443 2345667778888999876665553210 01 12333333
Q ss_pred CCHHHHHHHHhcCC---CCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccC
Q 019931 237 CDMSHLKTLLSCCT---MRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFN 308 (334)
Q Consensus 237 ~D~~~Le~~l~~~~---~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~ 308 (334)
+|+++|++++++.. ++..+|++|+++++.|.+.| |++|+++|++||++||+||+|+ | +|++|.++ .++++
T Consensus 180 ~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G-~GrtG~~~~~~~~~ 257 (425)
T PRK09264 180 DTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQA-G-CGRTGTFFSFERAG 257 (425)
T ss_pred hHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhh-C-CccccHHHHHhhcC
Confidence 47888999987532 25689999999999887543 9999999999999999999998 5 89999875 46778
Q ss_pred CCCCccEEEecCcccccCCc---cEEee
Q 019931 309 CERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
+.| ||+ ||+|++|..| |++++
T Consensus 258 v~P--Di~--t~~K~l~~~G~pigav~~ 281 (425)
T PRK09264 258 ITP--DIV--TLSKSISGYGLPMALVLI 281 (425)
T ss_pred CCC--CEE--EeccccCCCccceEEEEE
Confidence 777 454 8899998645 55554
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-21 Score=183.17 Aligned_cols=208 Identities=24% Similarity=0.266 Sum_probs=151.2
Q ss_pred eEEEeecCccCCCCCCHHHHHHHHHhcC--CCCccccccCchHHHHHHHHHHHhHhC--------CCcEEEeccHHHHHH
Q 019931 110 RLLLFSGNDYLGLSSHPTIAKAAARHGM--GPRGSALICGYTNYHRLLESCLADLKK--------KEDCLLCPTGFAANM 179 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~v~~a~~~~g~--g~~~sr~~~G~~~~~~~LE~~La~~~g--------~e~alv~~sG~~An~ 179 (334)
++|||++|+|+...++|.+.+++++.-. ........++....+.+|+++++++++ .+..+++++|+.++.
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~ 81 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAAL 81 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHH
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccch
Confidence 5789999999999888777775443321 122233344444556889999999988 343577777877766
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEee-------CCCHHHHHHHHhcCC-C
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYK-------HCDMSHLKTLLSCCT-M 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~-------~~D~~~Le~~l~~~~-~ 251 (334)
.++..+... ++++.|+++.+.|..+...++.. +.+++.++ +.|+++|++.+++.+ .
T Consensus 82 ~~~~~~~~~------------~~~~~vlv~~P~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 145 (363)
T PF00155_consen 82 FLLLRLLKI------------NPGDTVLVPDPCYPSYIEAARLL----GAEVIPVPLDSENDFHLDPEALEEALDELPSK 145 (363)
T ss_dssp HHHHHHHHS------------STTSEEEEEESSSTHHHHHHHHT----TSEEEEEEEEETTTTEETHHHHHHHHHTSHTT
T ss_pred hhhhhcccc------------cccccceecCCcccccccccccc----Cceeeecccccccccccccccccccccccccc
Confidence 666555521 13788999999999999888877 88888888 679999999998742 1
Q ss_pred --CcEEEEEcCCCCCCCCccCHHHH---HHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCc-cEEEecCccccc
Q 019931 252 --RKKVVVTDSLFSMDGDFAPMVEL---VKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDV-DICVGTLSKAAG 325 (334)
Q Consensus 252 --~~~lVv~e~v~n~~G~~~pL~~L---~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~-Div~~SlsKa~G 325 (334)
++++|++++++||+|...+.+++ +++|++||+++|+||+|....++..+.... ...+..+. .|++.||||+||
T Consensus 146 ~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~-~~~~~~~~~vi~~~S~SK~~g 224 (363)
T PF00155_consen 146 GPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPI-RSLLDEDDNVIVVGSLSKSFG 224 (363)
T ss_dssp TETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHH-HGHHTTTSTEEEEEESTTTTT
T ss_pred ccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcc-cccccccccceeeeecccccc
Confidence 36799999999999999886555 455999999999999999887764422210 12222222 489999999999
Q ss_pred CCc---cEEeeC
Q 019931 326 CQG---GFIACR 334 (334)
Q Consensus 326 ~~G---G~i~~~ 334 (334)
+.| ||++++
T Consensus 225 ~~GlRvG~i~~~ 236 (363)
T PF00155_consen 225 LPGLRVGYIVAP 236 (363)
T ss_dssp SGGGTEEEEEEE
T ss_pred ccccccccccch
Confidence 999 999863
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=182.81 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||++||+++|.+.+++++||++|+..++.+++++ ||.|+++...|.+....+.......|
T Consensus 58 ~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~~~--------------Gd~Vi~~~~~y~~t~~~~~~~~~~~G 123 (391)
T TIGR01328 58 NPTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILKA--------------GDHLISDECLYGCTFALLEHALTKFG 123 (391)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCC--------------CCEEEEecCcchHHHHHHHHHHhcCC
Confidence 3667999999999999999999999999999999888764 78888888777665544433222337
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
+++..++.+|++++++++++ ++++|++|+++||+|.+.|+++|.++|+++|+++|+|++|+.++++. .
T Consensus 124 ~~~~~vd~~d~e~l~~~i~~---~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~---------~ 191 (391)
T TIGR01328 124 IQVDFINMAIPEEVKAHIKD---NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTN---------P 191 (391)
T ss_pred eEEEEECCCCHHHHHHhhcc---CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCC---------c
Confidence 88888888899999988864 78999999999999999999999999999999999999999775532 1
Q ss_pred CCCCccEEEecCcccccCC----ccEEeeC
Q 019931 309 CERDVDICVGTLSKAAGCQ----GGFIACR 334 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~~----GG~i~~~ 334 (334)
+..++||++.|++|.+|+. ||+++++
T Consensus 192 ~~~g~Divv~S~sK~lgg~g~~~gG~v~~~ 221 (391)
T TIGR01328 192 VALGVDVVVHSATKYIGGHGDVVAGLICGK 221 (391)
T ss_pred hhcCCCEEEccccccccCCCCceEEEEEcC
Confidence 2345789999999999863 5888763
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=185.20 Aligned_cols=212 Identities=17% Similarity=0.123 Sum_probs=146.0
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFA 176 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~ 176 (334)
.+|.+||+||||.++ ..||.+ ||+|.+|+++. ........ ..-.++...+|.++|+++.+. +.+++++||++
T Consensus 37 l~D~dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~~~-~~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGsE 114 (428)
T PRK07986 37 LILADGRRLVDGMSSWWAAIHGYN-HPQLNAAMKSQIDAMSHVMF-GGITHPPAIELCRKLVAMTPQPLECVFLADSGSV 114 (428)
T ss_pred EEeCCCCEEEEcchhHHhhcCCCC-CHHHHHHHHHHHhhcCCccc-cccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHH
Confidence 356888999999875 467885 79999988654 22221111 111356778899999998753 57788899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc-----------CCcEEEE---------eeC
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT-----------KMVEVFV---------YKH 236 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~-----------~g~~v~~---------~~~ 236 (334)
|++.+++....-.. .. .+++..+|.....+|+.....+.++... .+..... +++
T Consensus 115 Ave~AlklAr~~~~--~~----g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 188 (428)
T PRK07986 115 AVEVAMKMALQYWQ--AK----GEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDE 188 (428)
T ss_pred HHHHHHHHHHHHHH--hc----CCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHH
Confidence 99999996443100 00 0234567778888998765554442100 0111111 125
Q ss_pred CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCc-c-C---HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCC
Q 019931 237 CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDF-A-P---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCE 310 (334)
Q Consensus 237 ~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~-~-p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~ 310 (334)
+|+++++++++....+..+|++|+++++.|.+ . | |++|+++|++||++||+||+| +| +|++|.++ .+++++.
T Consensus 189 ~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~-tG-~GrtG~~fa~~~~gv~ 266 (428)
T PRK07986 189 RDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIA-TG-FGRTGKLFACEHAGIA 266 (428)
T ss_pred HHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cC-CccCCCeeeecccCCC
Confidence 67889999997544467899999985554433 2 2 899999999999999999999 57 69999986 4788887
Q ss_pred CCccEEEecCcccccCCccE
Q 019931 311 RDVDICVGTLSKAAGCQGGF 330 (334)
Q Consensus 311 ~~~Div~~SlsKa~G~~GG~ 330 (334)
| ||+ +|+|++| |||
T Consensus 267 P--Di~--t~gK~l~--gG~ 280 (428)
T PRK07986 267 P--DIL--CLGKALT--GGT 280 (428)
T ss_pred C--CEE--Eechhhh--CCc
Confidence 7 566 7999996 554
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-20 Score=183.60 Aligned_cols=211 Identities=17% Similarity=0.164 Sum_probs=147.6
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC---CcEEEeccHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK---EDCLLCPTGFA 176 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~---e~alv~~sG~~ 176 (334)
++.+|++||||.++ ..||. +||+|.+|+++. ..+...+.. ...++...+|.++|+++.+. +++++++||++
T Consensus 37 ~D~dG~~ylD~~~g~~~~~lGH-~~p~v~~Ai~~ql~~~~~~~~~-~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGse 114 (445)
T PRK08593 37 TDVDGKTYIDLLASASSQNVGH-APPRVVEAIKAQADKFIHYTPA-YMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSD 114 (445)
T ss_pred EeCCCCEEEECCccHHhhcCCC-CCHHHHHHHHHHHHhccCcccc-ccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHH
Confidence 45778999999774 34788 599999987643 333222111 12357778999999998853 46777799999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC---------CcEEEEeeCC----------
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK---------MVEVFVYKHC---------- 237 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~---------g~~v~~~~~~---------- 237 (334)
||+++++.... .+++..+|..+..+|+.....+.++.... ...+..++..
T Consensus 115 A~e~AiklAr~-----------~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 183 (445)
T PRK08593 115 ANDGIIKFARA-----------YTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEP 183 (445)
T ss_pred HHHHHHHHHHH-----------hhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCC
Confidence 99999986432 23456788889999998877765552100 0112222221
Q ss_pred CH-------HHHHHHHhcC--CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-
Q 019931 238 DM-------SHLKTLLSCC--TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV- 303 (334)
Q Consensus 238 D~-------~~Le~~l~~~--~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~- 303 (334)
+. ++++++++.. ..+..+|++|+++++.|.+.| |++|+++|++||++||+||+|+ | +|++|.++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~t-g-~GrtG~~~a 261 (445)
T PRK08593 184 DANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQ-G-LGRTGKWSS 261 (445)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCcCchHHH
Confidence 11 3455555432 246889999999999998876 9999999999999999999997 3 68888865
Q ss_pred ccccCCCCCccEEEecCcccccC--CccEEee
Q 019931 304 AEQFNCERDVDICVGTLSKAAGC--QGGFIAC 333 (334)
Q Consensus 304 ~~~~~~~~~~Div~~SlsKa~G~--~GG~i~~ 333 (334)
.+++++.| ||+ ||+|++|. .+|++++
T Consensus 262 ~~~~gv~p--Di~--t~gK~l~~G~p~gav~~ 289 (445)
T PRK08593 262 ISHFNITP--DLM--SFGKSLAGGMPMSAIVG 289 (445)
T ss_pred HHhcCCCC--CEe--eecccccCCcccEEEEE
Confidence 46788877 444 89999974 2455654
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-20 Score=179.01 Aligned_cols=203 Identities=15% Similarity=0.179 Sum_probs=159.7
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC----CCc-EEEeccHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK----KED-CLLCPTGFAANMAVI 182 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~-alv~~sG~~An~~ai 182 (334)
++.||++..+ -++..++.+++++.+. ..+...+....|...+.+.+.+.+.+.+| .+. +++++++++|+..++
T Consensus 28 ~~vi~l~iG~-Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~ 106 (393)
T COG0436 28 EDVIDLSIGE-PDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAF 106 (393)
T ss_pred CCEEEeCCCC-CCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHH
Confidence 4689998887 4888899999977654 33321344677877777777777777766 234 888899999999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----C---CHHHHHHHHhcCCCCcE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----C---DMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~---D~~~Le~~l~~~~~~~~ 254 (334)
.+++.+ ||.|++..+.+.++...+.+. |++++.++. + |+++|++++++ +||
T Consensus 107 ~a~~~p--------------GDeVlip~P~Y~~y~~~~~~~----gg~~v~v~l~~~~~~f~~d~~~l~~~i~~---ktk 165 (393)
T COG0436 107 LALLNP--------------GDEVLIPDPGYPSYEAAVKLA----GGKPVPVPLDEEENGFKPDLEDLEAAITP---KTK 165 (393)
T ss_pred HHhcCC--------------CCEEEEeCCCCcCHHHHHHhc----CCEEEEEeCCcCccCCcCCHHHHHhhcCc---cce
Confidence 999876 888888888989998888888 888888773 1 68899998875 799
Q ss_pred EEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCC-CcccccccCCCCCccEEEecCcccccCCc--
Q 019931 255 VVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKN-GGGVAEQFNCERDVDICVGTLSKAAGCQG-- 328 (334)
Q Consensus 255 lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~-G~g~~~~~~~~~~~Div~~SlsKa~G~~G-- 328 (334)
+|++++|+||+|.+.+ |++|+++|++||++||.||+|...+++.. ....++..+. .+..|++.||||++++.|
T Consensus 166 ~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~-~~~~i~i~s~SK~~~mtGwR 244 (393)
T COG0436 166 AIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGA-RDRTITINSFSKTYGMTGWR 244 (393)
T ss_pred EEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCC-cceEEEEecccccccccccc
Confidence 9999999999999988 78899999999999999999998776531 2222222111 244589999999999988
Q ss_pred -cEEeeC
Q 019931 329 -GFIACR 334 (334)
Q Consensus 329 -G~i~~~ 334 (334)
||++++
T Consensus 245 vG~~v~~ 251 (393)
T COG0436 245 IGWVVGP 251 (393)
T ss_pred eeEeecC
Confidence 999874
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=187.31 Aligned_cols=209 Identities=14% Similarity=0.145 Sum_probs=141.8
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC-CCcEEEeccHHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK-KEDCLLCPTGFAA 177 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g-~e~alv~~sG~~A 177 (334)
.+|.+|++||||.+. ..||. +||+|.+|+++. ..+.. .+.......+|.++|+++.. .+.+++++||++|
T Consensus 42 l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~----~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA 116 (431)
T PRK06209 42 VWDVDGNEYIEYGMGLRAVGLGH-AYPPVVEAVREALQDGCN----FTRPSAIELDAAESFLELIDGADMVKFCKNGSDA 116 (431)
T ss_pred EEeCCCCEEEEccccccchhcCC-CCHHHHHHHHHHHHhCcC----CCCCCHHHHHHHHHHHHhCCccceEEEecCHHHH
Confidence 356888999999774 45777 489999988653 33321 22223444578999999874 4678888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEE-cCCCchhh--HHHHH-Hhhhc---CCcEEEEeeCCCHHHHHHHHhcCC
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFS-DALNHASI--IDGIR-IAERT---KMVEVFVYKHCDMSHLKTLLSCCT 250 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~-d~~~H~s~--~~g~~-ls~~~---~g~~v~~~~~~D~~~Le~~l~~~~ 250 (334)
++++++.... .+++..+|.+ ...+|+.. ..+.. .+... ....+..++|+|+++|++++++..
T Consensus 117 ~e~AlklAr~-----------~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 185 (431)
T PRK06209 117 TSAAVRLARA-----------YTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFRYNDIASLEALFEDHP 185 (431)
T ss_pred HHHHHHHHHH-----------HhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccCCCCHHHHHHHHHhCC
Confidence 9999995433 1233444444 23333210 00000 01000 001245788999999999997544
Q ss_pred CCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC--Cc
Q 019931 251 MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC--QG 328 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~--~G 328 (334)
.+..+|++|+++++.+...+|++|+++|++||++||+||+| +|+ +.++.|..+++++.| || .||+|++|. .+
T Consensus 186 ~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~-tG~-~~~~~g~~~~~gv~P--Di--~t~gK~lggG~p~ 259 (431)
T PRK06209 186 GRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMI-TGF-RWHMRGAQKLYGIVP--DL--SCFGKALGNGFAV 259 (431)
T ss_pred CCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEccc-ccC-CcCcchhhHHhCCCc--ce--eeehhhhcCCccc
Confidence 46789999999998666667999999999999999999999 574 555555555678877 44 589999975 45
Q ss_pred cEEee
Q 019931 329 GFIAC 333 (334)
Q Consensus 329 G~i~~ 333 (334)
|++++
T Consensus 260 ~av~~ 264 (431)
T PRK06209 260 SALAG 264 (431)
T ss_pred EEEEE
Confidence 66654
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=188.55 Aligned_cols=178 Identities=18% Similarity=0.120 Sum_probs=130.3
Q ss_pred HHHhcCCCCccccccCchHHHHHHHH----HHHhHhCCCc----EEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCC
Q 019931 132 AARHGMGPRGSALICGYTNYHRLLES----CLADLKKKED----CLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDE 202 (334)
Q Consensus 132 ~~~~g~g~~~sr~~~G~~~~~~~LE~----~La~~~g~e~----alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~ 202 (334)
.++|..|..+.|++.|+.. .+++|. +..++|+.+. +-+. .||+.||++++.+|++|
T Consensus 173 tnkYaEG~pG~Ryy~G~~~-iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~P-------------- 237 (586)
T PLN02271 173 TNKYSEGMPGARYYTGNQY-IDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLP-------------- 237 (586)
T ss_pred cccCCCCCCCCcCCCCChh-HHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhcCC--------------
Confidence 4679999999999988743 356654 4444778665 5555 59999999999999875
Q ss_pred CeEEEEcCCCchh-hHHHH------HHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCcc
Q 019931 203 KIAIFSDALNHAS-IIDGI------RIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFA 269 (334)
Q Consensus 203 gd~Vl~d~~~H~s-~~~g~------~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~ 269 (334)
||.|+...+.|+. +.++. +.+......++++|+.+ |+++|++++.. .++++|++.+..++ ...
T Consensus 238 GD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~--~rPKLII~g~Sayp--r~~ 313 (586)
T PLN02271 238 GDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALD--FRPKILICGGSSYP--REW 313 (586)
T ss_pred CCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhh--cCCeEEEECchhcc--CcC
Confidence 8889986665554 22221 11211112445566553 89999986654 37888888775444 478
Q ss_pred CHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc-cCCccEEee
Q 019931 270 PMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQGGFIAC 333 (334)
Q Consensus 270 pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~-G~~GG~i~~ 333 (334)
|+++|+++|+++|++|++|.||..|++.. +. +..+.+++||+++|++|+| |+.||+|++
T Consensus 314 D~~~i~eIAdevGA~LmvD~AH~aGLIa~---g~--~~sP~~~aDvvt~TTHKtLrGPrGG~I~~ 373 (586)
T PLN02271 314 DYARFRQIADKCGAVLMCDMAHISGLVAA---KE--CVNPFDYCDIVTSTTHKSLRGPRGGIIFY 373 (586)
T ss_pred CHHHHHHHHHHcCCEEEEECccccccccc---Cc--CCCCCcCCcEEEeCCcccCCCCCceEEEe
Confidence 89999999999999999999999998742 22 2234457899999999999 889999886
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-20 Score=181.59 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=131.4
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+...+||++|++++|.+.+++++||+.|+..++.+++++ ||.|+++...|.+............|
T Consensus 63 ~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~~--------------Gd~Vl~~~~~y~~~~~~~~~~~~~~G 128 (400)
T PRK06234 63 NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKA--------------GDHVVASDTLYGCTFALLNHGLTRYG 128 (400)
T ss_pred CccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCC--------------CCEEEEecCccchHHHHHHHHHhhCC
Confidence 3566899999999999999999999999999999888765 78888887777765544322111238
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHc--CCEEEEecCcccccccCCCcccccc
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKY--GFLLVLDDAHGTFVCGKNGGGVAEQ 306 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~--ga~LivDeAh~~Gv~G~~G~g~~~~ 306 (334)
++++.++..|++++++++++ ++++|++++++||+|.+.|+++|.++|+++ |+++|+|++|+.++++.
T Consensus 129 ~~v~~vd~~d~e~l~~~i~~---~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~-------- 197 (400)
T PRK06234 129 VEVTFVDTSNLEEVRNALKA---NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQR-------- 197 (400)
T ss_pred eEEEEECCCCHHHHHHHhcc---CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCC--------
Confidence 89999999999999999864 789999999999999999999999999997 99999999999875531
Q ss_pred cCCCCCccEEEecCcccccCC----ccEEeeC
Q 019931 307 FNCERDVDICVGTLSKAAGCQ----GGFIACR 334 (334)
Q Consensus 307 ~~~~~~~Div~~SlsKa~G~~----GG~i~~~ 334 (334)
.+..++||++.|++|.+++. ||+++++
T Consensus 198 -~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~ 228 (400)
T PRK06234 198 -PLQLGADVVVHSATKYLNGHGDVIAGFVVGK 228 (400)
T ss_pred -chhhCCcEEEeeccccccCCCCceeEEEEec
Confidence 12235789999999999764 5888874
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-20 Score=181.34 Aligned_cols=209 Identities=16% Similarity=0.112 Sum_probs=147.4
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~A 177 (334)
+|.+|++||||.+. ..||.+ ||+|.+|+++. ..+...+.. .-.++...+|.++|++..+ .+++++++||++|
T Consensus 37 ~D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~-~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA 114 (423)
T PRK05964 37 YLADGRELIDAISSWWVATHGHN-HPYIDQAIREQLDRLDHVIFA-GFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVA 114 (423)
T ss_pred EeCCCCEEEEcchhHHhccCCCC-CHHHHHHHHHHHhhCCCcccc-ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHH
Confidence 56788999999875 457774 89999987654 222211110 1124667889999999884 5678888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc----------CCcEEEEeeCCC-----HHHH
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT----------KMVEVFVYKHCD-----MSHL 242 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~----------~g~~v~~~~~~D-----~~~L 242 (334)
+.++++....-... . + .+++..+|.....+|+.....+.++... .+...+.++++| +++|
T Consensus 115 ~e~A~klar~~~~~-~-~---~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l 189 (423)
T PRK05964 115 VEVALKMALQYWRN-R-G---EPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDAL 189 (423)
T ss_pred HHHHHHHHHHHHHh-c-C---CCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHH
Confidence 99999964321000 0 0 1234667778888998766555443210 123445566677 8889
Q ss_pred HHHHhcCCCCcEEEEEcC-CCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEE
Q 019931 243 KTLLSCCTMRKKVVVTDS-LFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDIC 316 (334)
Q Consensus 243 e~~l~~~~~~~~lVv~e~-v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div 316 (334)
++++++...+..+|++|+ +.+..|...| |++|+++|++||++||+||+|+ | +|++|.+++ +++++.| ||+
T Consensus 190 ~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g-~gr~G~~~a~~~~~v~p--Di~ 265 (423)
T PRK05964 190 EALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIAT-G-FGRTGTLFACEQAGVSP--DIM 265 (423)
T ss_pred HHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCcCcchhHHHhcCCCC--Cee
Confidence 998875444678999999 5776776654 9999999999999999999996 5 688887754 6778776 454
Q ss_pred EecCccccc
Q 019931 317 VGTLSKAAG 325 (334)
Q Consensus 317 ~~SlsKa~G 325 (334)
+++|+++
T Consensus 266 --~~~K~l~ 272 (423)
T PRK05964 266 --CLSKGLT 272 (423)
T ss_pred --eeehhhh
Confidence 8999995
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-20 Score=180.75 Aligned_cols=160 Identities=15% Similarity=0.211 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||+++++++|.+.+++++||++|+..++.+++++ ||.|+++...|......+.......+
T Consensus 60 ~pt~~~Le~~lA~l~G~~~al~~~sG~~Ai~~~l~al~~~--------------Gd~Vv~~~~~y~~~~~~~~~~~~~~g 125 (386)
T PRK06767 60 NPTVKLFEERMAVLEGGEEALAFGSGMAAISATLIGFLKA--------------GDHIICSNGLYGCTYGFLEVLEEKFM 125 (386)
T ss_pred CcchHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCC--------------CCEEEEcCCcHHHHHHHHHHHHhhcC
Confidence 3557999999999999999999999999999999888764 78888888888776655543322235
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
.++..++..|++++++++++ ++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+.++. +
T Consensus 126 i~~~~~~~~d~~~l~~~i~~---~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~---------p 193 (386)
T PRK06767 126 ITHSFCDMETEADIENKIRP---NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQR---------P 193 (386)
T ss_pred eEEEEeCCCCHHHHHHhhCc---CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCC---------c
Confidence 66666666788899888864 78999999999999999999999999999999999999998764431 2
Q ss_pred CCCCccEEEecCcccccCC----ccEEeeC
Q 019931 309 CERDVDICVGTLSKAAGCQ----GGFIACR 334 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~~----GG~i~~~ 334 (334)
+..++|+++.|++|.+++. ||+++++
T Consensus 194 l~~g~Div~~S~sK~l~g~g~~~gG~v~~~ 223 (386)
T PRK06767 194 LELGCDAVVHSATKYIGGHGDVVAGVTICK 223 (386)
T ss_pred hhcCCcEEEecCcceecCCCCceeEEEEeC
Confidence 2345789999999999764 6888864
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-20 Score=183.35 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=128.6
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHH-hhhcC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRI-AERTK 227 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~l-s~~~~ 227 (334)
.+.+++||+++++++|.+.+++++||++|+..++.+++++ ||.|+++...+......+.. ..+..
T Consensus 75 ~Pt~~~LE~~lA~l~g~~~~l~~~sG~~Ai~~al~al~~~--------------GD~Vl~~~~~Y~~~~~~~~~~~~~~~ 140 (418)
T PLN02242 75 NPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLCSS--------------GGHVVASNTLYGGTHALLAHFLPRKC 140 (418)
T ss_pred ChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhCC--------------CCEEEEcCCcHHHHHHHHHHhhhhcc
Confidence 5888999999999999999999999999999999998875 78888887766554333211 11112
Q ss_pred CcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCccccccc
Q 019931 228 MVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 228 g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
+.+++.++..|++++++++++ .++++|++++++||+|.+.|+++|+++|+++|++||+|++|+.+.+.+ .
T Consensus 141 G~~~~~~d~~d~e~l~~~i~~--~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~~~~-----~--- 210 (418)
T PLN02242 141 NITTTFVDITDLEAVKKAVVP--GKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVLSP-----A--- 210 (418)
T ss_pred CceEEEcCCCCHHHHHHhcCc--CCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccCCCH-----H---
Confidence 778888888899999998864 148999999999999999999999999999999999999997543321 1
Q ss_pred CCCCCccEEEecCcccccCC----ccEEeeC
Q 019931 308 NCERDVDICVGTLSKAAGCQ----GGFIACR 334 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~~----GG~i~~~ 334 (334)
..++||++.||||++++. ||+|+++
T Consensus 211 --~~g~divv~S~SK~l~g~g~~~gG~iv~~ 239 (418)
T PLN02242 211 --RLGADVVVHSISKFISGGADIIAGAVCGP 239 (418)
T ss_pred --HcCCcEEEEeCccccCCCCCceEEEEEcC
Confidence 114689999999999764 6888864
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-20 Score=178.12 Aligned_cols=194 Identities=20% Similarity=0.193 Sum_probs=144.6
Q ss_pred EeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhc
Q 019931 113 LFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLL 192 (334)
Q Consensus 113 ~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~ 192 (334)
||+|++++| .+|.+++++.++..+.. .++..+.++++++.+++++|.+.++++++|++|+..++.+++.+
T Consensus 1 ~~~~~~~~~--~~~~v~~a~~~~~~~~~----~~~~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~~~---- 70 (338)
T cd06502 1 DFRSDTVTG--PTPEMLEAMAAANVGDD----VYGEDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHTQP---- 70 (338)
T ss_pred CcccccCCC--CCHHHHHHHHhcccCCc----ccCCCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhcCC----
Confidence 699999998 47999999887644321 33446778999999999999777888999999999999887754
Q ss_pred cCCCccCCCCCeEEEEcCCCchhhHHH---HHHhhhcCCcEEEEeeC----CCHHHHHHHHhcCC----CCcEEEEEcCC
Q 019931 193 AGDEKSFKDEKIAIFSDALNHASIIDG---IRIAERTKMVEVFVYKH----CDMSHLKTLLSCCT----MRKKVVVTDSL 261 (334)
Q Consensus 193 ~~~~~~~~~~gd~Vl~d~~~H~s~~~g---~~ls~~~~g~~v~~~~~----~D~~~Le~~l~~~~----~~~~lVv~e~v 261 (334)
||.|+++.+.|.+.... .++. |.+++.+++ .|+++|++++++.. +++++|+++++
T Consensus 71 ----------gd~v~~~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p 136 (338)
T cd06502 71 ----------GGSVICHETAHIYTDEAGAPEFLS----GVKLLPVPGENGKLTPEDLEAAIRPRDDIHFPPPSLVSLENT 136 (338)
T ss_pred ----------CCeEEEecCcceeeecCCcHHHHc----CceEEeecCCCCcCCHHHHHHHhhccCCCcCCcceEEEEEee
Confidence 78899999998775432 2233 788888875 48899999886421 26789999999
Q ss_pred CCCCC--CccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCccE-Eee
Q 019931 262 FSMDG--DFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGF-IAC 333 (334)
Q Consensus 262 ~n~~G--~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~GG~-i~~ 333 (334)
+|+.| ...++++|+++|+++|+++|+|+||..+..+..|.... ....++|+++.|+||+||+.||+ +++
T Consensus 137 ~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~---~~~~~~d~~~~s~sK~~~~~~g~~~~~ 208 (338)
T cd06502 137 TEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALK---TYKSGVDSVSFCLSKGGGAPVGAVVVG 208 (338)
T ss_pred cCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHH---HHHhcCCEEEEeccccCCCccceEEEC
Confidence 99744 23457889999999999999999997554322222111 11235688999999999986665 443
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.8e-20 Score=177.22 Aligned_cols=199 Identities=17% Similarity=0.171 Sum_probs=148.1
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
+|.+|++||||.+. ..+|. +||+|.+|+++. .........+ .++...+|+++|+++.+.+++++++||++|+.
T Consensus 19 ~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~~~~--~~~~~~~la~~l~~~~~~~~v~~~~SGseA~e 95 (364)
T PRK04013 19 WDSQGRRYLDLIAGIGVNVLGH-NHPEWVEEMSEQLEKLVVAGPMF--EHEEKEEMLEELSKWVNYEYVYMGNSGTEAVE 95 (364)
T ss_pred EECCCCEEEEcccChhhccCCC-CCHHHHHHHHHHHHhcCCccCCc--CCHHHHHHHHHHHhhcCCCEEEEeCchHHHHH
Confidence 45778999999875 44777 589999977543 2222111112 24677999999999998888999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc---C-----CcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT---K-----MVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~---~-----g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
.+++.+... +++..+|..+..+|+.....+.++... . -..+..++.+|.+.+++.+.+
T Consensus 96 ~Alklar~~-----------~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~--- 161 (364)
T PRK04013 96 AALKFARLY-----------TGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKEAITK--- 161 (364)
T ss_pred HHHHHHHHH-----------hCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCCHHHHHHHhcC---
Confidence 999975542 234567778888998866554432100 0 123455677899999998863
Q ss_pred CcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEecCcccccC
Q 019931 252 RKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++|++|++.+..|...| +++|+++|++||++||+||+++ | + ++|.++ .+++++.|+ |+ +|+|++|.
T Consensus 162 ~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~t-G-~-RtG~~~a~~~~gv~PD--iv--~~gK~lgg 234 (364)
T PRK04013 162 ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQS-G-L-RTGKFLAIEHYKVEPD--IV--TMGKGIGN 234 (364)
T ss_pred CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-c-C-CCCchhHHHhcCCCCC--EE--EecccccC
Confidence 7899999999998887554 9999999999999999999998 5 4 888765 467888875 55 89999974
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-20 Score=183.20 Aligned_cols=213 Identities=16% Similarity=0.137 Sum_probs=145.7
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~A 177 (334)
++.+|++||||.++ ..||.+ ||+|.+|+++. ......... .-.++...+|.++|++..+ .+++++++||++|
T Consensus 39 ~D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~-~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseA 116 (429)
T PRK06173 39 TLKDGRRLIDGMSSWWAALHGYN-HPRLNAAATNQLAKMSHIMFG-GFTHEPAVELAQKLLEILPPSLNKIFFADSGSVA 116 (429)
T ss_pred EcCCCCEEEEccchHHhccCCCC-CHHHHHHHHHHHHhcCCcccc-ccCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHH
Confidence 46778999999874 467774 79999977543 322211111 1125667889999999874 4678888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh----c-------CCcEEEEeeC---------C
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER----T-------KMVEVFVYKH---------C 237 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~----~-------~g~~v~~~~~---------~ 237 (334)
+.++++....... ..+ .+++..+|.....+|+.....+.++.. . .......++. .
T Consensus 117 ve~AlklAr~~~~--~~g---~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 191 (429)
T PRK06173 117 VEVAMKMALQYQQ--AKG---EVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDE 191 (429)
T ss_pred HHHHHHHHHHHHH--HhC---CCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHH
Confidence 9999996543100 000 123456777888899976655443210 0 0111112221 1
Q ss_pred CHHHHHHHHhcCCCCcEEEEEcCC-CCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCC
Q 019931 238 DMSHLKTLLSCCTMRKKVVVTDSL-FSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCER 311 (334)
Q Consensus 238 D~~~Le~~l~~~~~~~~lVv~e~v-~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~ 311 (334)
+++.|++++.+...+...|++|++ .+..|.+.| +++|+++|++||++||+||+| +| +|++|+++ .+++++.|
T Consensus 192 ~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~-tG-~GrtG~~~a~~~~gv~P 269 (429)
T PRK06173 192 AIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIA-TG-FGRTGKLFALEHAGVVP 269 (429)
T ss_pred HHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchh-cC-CCcCCcchHHHhcCCCC
Confidence 466678888654457889999997 888787644 899999999999999999999 67 79999987 57889877
Q ss_pred CccEEEecCcccccCCccEE
Q 019931 312 DVDICVGTLSKAAGCQGGFI 331 (334)
Q Consensus 312 ~~Div~~SlsKa~G~~GG~i 331 (334)
||+ +|+|++| |||+
T Consensus 270 --Div--~~gK~l~--gG~~ 283 (429)
T PRK06173 270 --DIM--CIGKALT--GGYL 283 (429)
T ss_pred --CEE--Eeehhhh--CCcc
Confidence 555 6999995 5543
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-20 Score=181.22 Aligned_cols=160 Identities=14% Similarity=0.075 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+.+++||++|+++.|.+.+++|+||++|+..++.+++.+ ||.|++....|.+....+.......|
T Consensus 63 ~p~~~~le~~lA~l~g~~~~i~~ssG~~Ai~~~l~all~~--------------GD~Vi~~~~~y~~~~~~~~~~~~~~G 128 (398)
T PRK08249 63 NPTVQAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLKP--------------GDRVVSIKDTYGGTNKIFTEFLPRMG 128 (398)
T ss_pred ChHHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCC--------------CCEEEEcCCchHHHHHHHHHHHhhCC
Confidence 4778999999999999999999999999999999888764 78888888888765433321111237
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
+++..++..|++++++++++ ++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.++... .
T Consensus 129 i~v~~vd~~d~e~l~~~i~~---~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~---------~ 196 (398)
T PRK08249 129 VDVTLCETGDHEQIEAEIAK---GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQN---------P 196 (398)
T ss_pred eEEEEcCCCCHHHHHHhcCC---CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCC---------c
Confidence 88888888899999999864 78999999999999999999999999999999999999998764321 1
Q ss_pred CCCCccEEEecCcccccC----CccEEeeC
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIACR 334 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~~ 334 (334)
+..++|+++.|++|.+|+ .||+++++
T Consensus 197 l~~~~Divv~S~sK~l~g~~~~~gG~vv~~ 226 (398)
T PRK08249 197 LALGADLVIHSATKFLSGHADALGGVVCGS 226 (398)
T ss_pred hhhCCCEEeccCceecCCCCCceEEEEECC
Confidence 224578999999999985 46887753
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.5e-20 Score=182.53 Aligned_cols=210 Identities=16% Similarity=0.114 Sum_probs=144.3
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFA 176 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~ 176 (334)
.++.+|++||||.+. ..||. +||+|.+|+++.- .....+.. .-.++...+|.++|+++.. .+++++++||++
T Consensus 40 l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~l~~~~~~-~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGse 117 (442)
T PRK13360 40 YTTHDGRRVLDGTAGLWCVNAGH-GRPEIVEAVRAQAGELDYAPAF-QMGHPKAFELANRIAEIAPGGLNHVFFTNSGSE 117 (442)
T ss_pred EEeCCCCEEEECchhHHHhccCC-CCHHHHHHHHHHHHhCCCcccC-CcCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHH
Confidence 356888999999775 44777 5899999776432 21112222 1235667899999999874 467888899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc-----CC---cEEEEeeCC-----------
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT-----KM---VEVFVYKHC----------- 237 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~-----~g---~~v~~~~~~----------- 237 (334)
|+.++++..... +.... ..++..+|.....+|+.....+.++... .+ ..+..++..
T Consensus 118 A~e~AlklAr~~----~~~~g-~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 192 (442)
T PRK13360 118 SVDTALKIALAY----HRARG-EGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKG 192 (442)
T ss_pred HHHHHHHHHHHH----HHhcC-CCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCC
Confidence 999999864431 00000 0123456667888998866555443110 00 111222221
Q ss_pred -------CHHHHHHHHhcC-CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-c
Q 019931 238 -------DMSHLKTLLSCC-TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-A 304 (334)
Q Consensus 238 -------D~~~Le~~l~~~-~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~ 304 (334)
..++||++++.. ..+..+|++|+++++.|.+.| |++|+++|++||++||+||+|+ | +|++|.++ .
T Consensus 193 ~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~t-G-~GrtG~~~a~ 270 (442)
T PRK13360 193 QPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVIT-G-FGRLGAPFAA 270 (442)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCCCccchhh
Confidence 145788888643 246789999999999999988 9999999999999999999997 4 58888876 4
Q ss_pred cccCCCCCccEEEecCccccc
Q 019931 305 EQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 305 ~~~~~~~~~Div~~SlsKa~G 325 (334)
+++++.| ||+ ||+|++|
T Consensus 271 ~~~gv~P--Div--t~gK~l~ 287 (442)
T PRK13360 271 QYFGVTP--DLL--TCAKGLT 287 (442)
T ss_pred hhcCCCC--cee--eeeeccc
Confidence 7888877 455 8999996
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-20 Score=179.67 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=128.5
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+.+++||+++++++|.+++++|+||++|+..++.+++++ ||.|++....|.++...++.. ...+
T Consensus 52 np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~--------------GD~Vlv~~~~y~~~~~~~~~~-~~~g 116 (385)
T PRK08574 52 NPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKA--------------GDRVVLPMEAYGTTLRLLKSL-EKFG 116 (385)
T ss_pred CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCC--------------CCEEEEcCCCchhHHHHHHHh-hccC
Confidence 4677999999999999999999999999999999888764 788888888888877666433 2236
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
+++..+. .|++++++++++ .++++|++++++||+|.+.|+++|+++|+++|+++|+|++|+.++..+ +
T Consensus 117 ~~v~~~~-~d~~~l~~~i~~--~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~---------~ 184 (385)
T PRK08574 117 VKVVLAY-PSTEDIIEAIKE--GRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYR---------P 184 (385)
T ss_pred cEEEEEC-CCHHHHHHhcCc--cCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCC---------h
Confidence 6666554 478889888864 268999999999999999999999999999999999999998875421 2
Q ss_pred CCCCccEEEecCcccccC----CccEEee
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+..++||++.|++|.+++ .||++++
T Consensus 185 l~~GaDivv~S~sK~l~g~~d~~gG~vi~ 213 (385)
T PRK08574 185 LRHGADFVVHSLTKYIAGHNDVVGGVAVA 213 (385)
T ss_pred hhhCCcEEEeeCceeecCCCCceeEEEEE
Confidence 234579999999999975 4785443
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=177.00 Aligned_cols=215 Identities=20% Similarity=0.205 Sum_probs=150.9
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
+|.+|++||||.++ ..||.+ ||+|.+|+.+. ......+.. ..++...+|.++|++..+.+.+++++||++|+.
T Consensus 10 ~D~dG~~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~--~~~~~~~~la~~l~~~~~~~~v~f~~sGseA~e 86 (382)
T PLN00144 10 YDVEGKEYLDMAAGIAVNALGHG-DPDWVKAVAEQAGTLAHVSNV--YHTIPQVELAKRLVASSFADRVFFCNSGTEANE 86 (382)
T ss_pred EeCCCCEEEECCcCHHhccCCCC-CHHHHHHHHHHHHhcCCcccc--ccCHHHHHHHHHHHhcCCCCeEEEeCCcHHHHH
Confidence 46788999999876 347774 89999977543 333222221 125666889999999887788899999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCC------CCeEEEEcCCCchhhHHHHHHhhhcC--------CcEEEEeeCCCHHHHHHH
Q 019931 180 AVIVAVGNIASLLAGDEKSFKD------EKIAIFSDALNHASIIDGIRIAERTK--------MVEVFVYKHCDMSHLKTL 245 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~------~gd~Vl~d~~~H~s~~~g~~ls~~~~--------g~~v~~~~~~D~~~Le~~ 245 (334)
++++..... +......++ +..+|.....+|+.....+.++.... ...+..++++|+++|+++
T Consensus 87 ~AlklAr~~----~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 162 (382)
T PLN00144 87 AAIKFARKY----QRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKL 162 (382)
T ss_pred HHHHHHHHH----HhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHh
Confidence 999965431 100000000 24567778889998766655442100 012456678899999998
Q ss_pred HhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecC
Q 019931 246 LSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTL 320 (334)
Q Consensus 246 l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~Sl 320 (334)
++. .+.++|++|++.++.|...| +++|+++|++||++||+||+|+. +|++|.++. +++++.|+ +.||
T Consensus 163 ~~~--~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg--~gr~g~~~~~~~~~~~PD----i~t~ 234 (382)
T PLN00144 163 IQK--GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCG--LGRTGYLWAHEAYGVEPD----IMTL 234 (382)
T ss_pred cCC--CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC--CCccchHhhhhhcCCCCC----EEEe
Confidence 853 36789999999998665443 88999999999999999999984 788887654 46788775 5699
Q ss_pred cccccC--CccEEee
Q 019931 321 SKAAGC--QGGFIAC 333 (334)
Q Consensus 321 sKa~G~--~GG~i~~ 333 (334)
||+++. ..|++++
T Consensus 235 sK~l~~G~pig~v~~ 249 (382)
T PLN00144 235 AKPLAGGLPIGAVLV 249 (382)
T ss_pred cccccCCcceEEEEE
Confidence 999963 3455554
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=177.14 Aligned_cols=160 Identities=20% Similarity=0.194 Sum_probs=128.6
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+...+||++|++++|.+.+++++||++|+..++.+++++ ||.|++....|......+.......+
T Consensus 53 ~p~~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al~~~--------------Gd~Vl~~~~~~~~t~~~~~~~~~~~g 118 (380)
T TIGR01325 53 NPTVAAFEERIAALEGAERAVATATGMSAIQAALMTLLQA--------------GDHVVASRSLFGSTVGFISEILPRFG 118 (380)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCC--------------CCEEEEecCCcchHHHHHHHHHHHhC
Confidence 4667999999999999999999999999999999988764 67777777777654433321111237
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
.++..++.+|++++++++++ ++++|++++++||+|.+.|+++|.++|+++|++||+|++|+.+++.. +
T Consensus 119 ~~v~~v~~~d~~~l~~~i~~---~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~---------p 186 (380)
T TIGR01325 119 IEVSFVDPTDLNAWEAAVKP---NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQ---------P 186 (380)
T ss_pred CEEEEECCCCHHHHHHhcCC---CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCC---------c
Confidence 88888888899999988864 78999999999999999999999999999999999999998664321 1
Q ss_pred CCCCccEEEecCcccccC----CccEEeeC
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIACR 334 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~~ 334 (334)
+..++||++.|++|.+++ .||+++++
T Consensus 187 l~~g~Divv~S~sK~l~g~g~~~gG~vv~~ 216 (380)
T TIGR01325 187 LKLGADVVVYSATKHIDGQGRVMGGVIAGS 216 (380)
T ss_pred hhhCCCEEEeeccceecCCCCeEEEEEEeC
Confidence 233568999999999976 35888764
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-20 Score=197.49 Aligned_cols=203 Identities=18% Similarity=0.143 Sum_probs=146.9
Q ss_pred hhcccceeEEEeecCccCCCC-CCHHHHHHHH-HhcCCCCccccccCchHHHHHHHHHHHhHh--CCCcEEEeccHHHHH
Q 019931 103 TFARQFKRLLLFSGNDYLGLS-SHPTIAKAAA-RHGMGPRGSALICGYTNYHRLLESCLADLK--KKEDCLLCPTGFAAN 178 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn~yLgl~-~~p~v~~a~~-~~g~g~~~sr~~~G~~~~~~~LE~~La~~~--g~e~alv~~sG~~An 178 (334)
.++.+|++||||.++ |..++ +||+|.+|+. +.+.+...+++ ..+.+.+|+++|++++ +.+.+++++||++||
T Consensus 579 l~D~dG~~ylD~~~~-~~~lGh~hp~v~~Ai~~q~~~l~~~~~~---~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~ 654 (972)
T PRK06149 579 LFDMAGRSYLDMVNN-VTVLGHGHPRLAAAAARQWSLLNTNSRF---HYAAVAEFSERLAALAPDGLDTVFLVNSGSEAN 654 (972)
T ss_pred EEeCCCCEEEECCCC-ccccCCCCHHHHHHHHHHHHhccccccc---cCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHH
Confidence 457889999999865 55666 6999999774 55555444443 3477899999999998 457889999999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh-----c---C---CcEEEE--------eeCCC-
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER-----T---K---MVEVFV--------YKHCD- 238 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~-----~---~---g~~v~~--------~~~~D- 238 (334)
.++++.... .+++.++|..+..+|+.......++.. . . +...+. |+++|
T Consensus 655 e~AlklAr~-----------~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~ 723 (972)
T PRK06149 655 DLAIRLAWA-----------ASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADS 723 (972)
T ss_pred HHHHHHHHH-----------hcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCccc
Confidence 999985432 234678899999999876554433210 0 0 001111 22233
Q ss_pred ----HHHHHHHHhc---CCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcc--ccc
Q 019931 239 ----MSHLKTLLSC---CTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG--VAE 305 (334)
Q Consensus 239 ----~~~Le~~l~~---~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g--~~~ 305 (334)
.+++++.++. ...+..+|++|+++++.|.+.| |++|+++|++||+++|+||+|+ | +|++|.. .++
T Consensus 724 ~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~t-G-fGRtG~~~~a~e 801 (972)
T PRK06149 724 AADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQV-G-YGRLGHYFWGFE 801 (972)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehh-c-CCccCccchhhh
Confidence 3555555542 2246789999999999999888 9999999999999999999996 3 6788863 357
Q ss_pred ccCCCCCccEEEecCcccccC
Q 019931 306 QFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 306 ~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++.| ||+ ||+|++|.
T Consensus 802 ~~gv~P--Div--t~gK~lg~ 818 (972)
T PRK06149 802 QQGVVP--DII--TMAKGMGN 818 (972)
T ss_pred hcCCCC--CEE--EecccccC
Confidence 889877 565 89999973
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=177.04 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=125.8
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||++|+++.|.+.+++|+||+.|+..++.+++++ ||.|++....|++....+.... ..|
T Consensus 46 ~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~--------------Gd~Vv~~~~~y~~t~~~~~~l~-~~G 110 (397)
T PRK05939 46 TPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRA--------------GDHLVSSQFLFGNTNSLFGTLR-GLG 110 (397)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCC--------------CCEEEECCCccccHHHHHHHHH-hcC
Confidence 4777999999999999999999999999999999888765 7778877776654332222111 228
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
++++.++..|+++|++++++ ++++|++++++|++|.+.|+++|+++|+++|+++|+|++|+.+.. ..+
T Consensus 111 ~~v~~v~~~d~e~l~~~l~~---~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~---------~~~ 178 (397)
T PRK05939 111 VEVTMVDATDVQNVAAAIRP---NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWL---------FRP 178 (397)
T ss_pred CEEEEECCCCHHHHHHhCCC---CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccccc---------cCc
Confidence 89999998999999998864 789999999999999999999999999999999999999976521 112
Q ss_pred CCCCccEEEecCcccccCCccE
Q 019931 309 CERDVDICVGTLSKAAGCQGGF 330 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~~GG~ 330 (334)
...++||++.|++|.+++.|+.
T Consensus 179 ~~~gaDivv~S~sK~~~g~g~~ 200 (397)
T PRK05939 179 KDVGASLVINSLSKYIAGHGNA 200 (397)
T ss_pred cccCCEEEEecCeecccCCCCe
Confidence 2346899999999999876543
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=181.10 Aligned_cols=211 Identities=19% Similarity=0.165 Sum_probs=145.7
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~A 177 (334)
++.+|++||||+++ ..||.+ ||+|.+|++++- .....+......++...+|.++|+++++ .+++++++||++|
T Consensus 43 ~D~dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA 121 (460)
T PRK06105 43 YDDAGKRYIEGMAGLWSVALGFS-EQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEA 121 (460)
T ss_pred EECCCCEEEEcchhHHhccCCCC-CHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHH
Confidence 56788999999875 457774 899999876542 2221111111236777899999999875 3578888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC-----C---cEEEEeeCC------------
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK-----M---VEVFVYKHC------------ 237 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~-----g---~~v~~~~~~------------ 237 (334)
|.++++....... .. -.+++..+|..+..+|+....++.++.... + ..+..++..
T Consensus 122 ve~AlKlar~~~~--~~---g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 196 (460)
T PRK06105 122 NDTVVKLVWYYNN--AL---GRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESE 196 (460)
T ss_pred HHHHHHHHHHHHH--hc---CCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCCh
Confidence 9999997532100 00 012346677788999998766654432110 0 011112111
Q ss_pred ------CHHHHHHHHhcC-CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-cc
Q 019931 238 ------DMSHLKTLLSCC-TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AE 305 (334)
Q Consensus 238 ------D~~~Le~~l~~~-~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~ 305 (334)
..+++|+++... ..+..+|++|++++..|.+.| |++|+++|++||++||+||+|+. +|++|.++ .+
T Consensus 197 ~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG--~GRtG~~f~~~ 274 (460)
T PRK06105 197 EAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICG--FGRTGNMFGCE 274 (460)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccC--CCcCchhhhHH
Confidence 136678887532 246789999999999998877 99999999999999999999963 67888776 46
Q ss_pred ccCCCCCccEEEecCcccccC
Q 019931 306 QFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 306 ~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++.|| |+ +|+|++|.
T Consensus 275 ~~~v~PD--i~--~~gK~lgg 291 (460)
T PRK06105 275 TFGIKPD--IL--VMSKQLSS 291 (460)
T ss_pred hcCCCCC--ee--eeeccccc
Confidence 7888874 55 89999963
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=177.65 Aligned_cols=159 Identities=18% Similarity=0.111 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.|..+.||++|+++.|.+.+++|+||+.|+.+++.+++++ ||.|++....|..+...+.......|
T Consensus 61 nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~--------------GD~Vv~~~~~Yg~t~~l~~~~l~~~G 126 (395)
T PRK08114 61 TLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQ--------------GDHVLMTGTAYEPTQDFCSKILSKLG 126 (395)
T ss_pred ChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCC--------------CCEEEEeCCCcHHHHHHHHHHHHhcC
Confidence 5788999999999999999999999999999999888765 77788777777776655542222348
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcC--CEEEEecCcccccccCCCcccccc
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYG--FLLVLDDAHGTFVCGKNGGGVAEQ 306 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~g--a~LivDeAh~~Gv~G~~G~g~~~~ 306 (334)
.++..++..|++++++++++ +|++|++|+++||+|.+.|+++|+++|+++| ++++||++++.+++ .
T Consensus 127 i~v~~vd~~d~~~l~~~l~~---~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~---------~ 194 (395)
T PRK08114 127 VTTTWFDPLIGADIAKLIQP---NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL---------F 194 (395)
T ss_pred cEEEEECCCCHHHHHHhcCC---CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc---------c
Confidence 89999999999999999875 7899999999999999999999999999985 99999999998753 1
Q ss_pred cCCCCCccEEEecCcccccCC----ccEEee
Q 019931 307 FNCERDVDICVGTLSKAAGCQ----GGFIAC 333 (334)
Q Consensus 307 ~~~~~~~Div~~SlsKa~G~~----GG~i~~ 333 (334)
.....++||++.|.+|.+++. ||++++
T Consensus 195 ~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~ 225 (395)
T PRK08114 195 KALDFGIDISIQAGTKYLVGHSDAMIGTAVA 225 (395)
T ss_pred CHHHcCCcEEEEcCcccccCCCcceeEEEEc
Confidence 123356899999999999764 465553
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=178.14 Aligned_cols=154 Identities=17% Similarity=0.159 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||++|++++|.+.+++++||++|+..++.+++++ ||.|++....|......+.......|
T Consensus 56 ~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~~--------------Gd~Vl~~~~~y~~t~~~~~~~~~~~G 121 (418)
T TIGR01326 56 NPTTDVLEQRIAALEGGVAALAVASGQAAITYAILNLAQA--------------GDNIVSSSYLYGGTYNLFKHTLKRLG 121 (418)
T ss_pred ChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhCC--------------CCEEEEECCCcHHHHHHHHHHHHHcC
Confidence 3667899999999999999999999999999999888764 67676666555443332221111237
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
++++.++.+|++++++++++ ++++|++++++||+|.+.|+++|+++|+++|+++|+|++|+.+.+. ..
T Consensus 122 ~~v~~v~~~d~~~l~~~l~~---~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~~---------~~ 189 (418)
T TIGR01326 122 IEVRFVDPDDPEEFEKAIDE---NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLC---------RP 189 (418)
T ss_pred cEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhcC---------Cc
Confidence 88989998899999998864 6899999999999999999999999999999999999999865321 11
Q ss_pred CCCCccEEEecCcccccCCc
Q 019931 309 CERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~~G 328 (334)
+..++||++.||+|.+|+.|
T Consensus 190 l~~g~Divv~S~sK~l~g~G 209 (418)
T TIGR01326 190 IDHGADIVVHSATKYIGGHG 209 (418)
T ss_pred hhcCCeEEEECccccccCCc
Confidence 23357999999999998744
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=180.18 Aligned_cols=216 Identities=19% Similarity=0.146 Sum_probs=147.0
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~A 177 (334)
+|.+|++||||.++ ..||.+ ||+|.+|+++. ......... ...++...+|.++|+++.+ .+++++++||++|
T Consensus 47 ~D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Av~~q~~~~~~~~~~-~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA 124 (460)
T PRK06541 47 WDDRGKRYLDGLAGLFVVQVGHG-RAELAEAAAKQAGTLAFFPLW-SYAHPPAIELAERLAALAPGDLNRVFFTTGGSEA 124 (460)
T ss_pred EeCCCCEEEECCccHHhccCCCC-CHHHHHHHHHHHhhCcCcccc-ccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHH
Confidence 46788999999875 457884 89999987654 222111111 1235667889999999875 3678888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc----------CCcEEEEeeC--------CC-
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT----------KMVEVFVYKH--------CD- 238 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~----------~g~~v~~~~~--------~D- 238 (334)
+.++++....... .++ .+++..+|.....+|+.....+.++... .+...+.+++ ++
T Consensus 125 ve~AlklAr~~~~-~~g----~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 199 (460)
T PRK06541 125 VESAWKLAKQYFK-LTG----KPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDP 199 (460)
T ss_pred HHHHHHHHHHHHH-hcC----CCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCH
Confidence 9999986432100 000 0124567778888999876655543110 0111111111 22
Q ss_pred -------HHHHHHHHhcC-CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-cc
Q 019931 239 -------MSHLKTLLSCC-TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AE 305 (334)
Q Consensus 239 -------~~~Le~~l~~~-~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~ 305 (334)
++.+++++++. +.+..+|++|+++++.|.+.| |++|+++|++||++||+||+|+. +|++|.++ .+
T Consensus 200 ~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG--fGR~G~~~a~~ 277 (460)
T PRK06541 200 EAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICA--FGRLGEMFGCE 277 (460)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC--CCcCchhhhhh
Confidence 26788888642 246789999999999999888 99999999999999999999963 57778765 46
Q ss_pred ccCCCCCccEEEecCcccccC----CccEEe
Q 019931 306 QFNCERDVDICVGTLSKAAGC----QGGFIA 332 (334)
Q Consensus 306 ~~~~~~~~Div~~SlsKa~G~----~GG~i~ 332 (334)
++++.| ||+ ||+|++|. .|++++
T Consensus 278 ~~gv~P--Div--t~gK~l~~G~~pigav~~ 304 (460)
T PRK06541 278 RFGYVP--DII--TCAKGITSGYSPLGAMIA 304 (460)
T ss_pred hcCCCC--CEE--EecccccCCccceeEEEE
Confidence 788877 555 79999972 455554
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=173.82 Aligned_cols=202 Identities=19% Similarity=0.194 Sum_probs=150.9
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC-CcEEEeccHHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK-EDCLLCPTGFAA 177 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~-e~alv~~sG~~A 177 (334)
.+|.+|++||||+-. ..||. .||.|++|+++. ..|.. +...++.-.++.+.|.+.++. |.+-+++||++|
T Consensus 47 l~DvDGn~YIDy~~~~Gp~ilGH-~~p~V~~Av~~~l~~G~~----fg~Pte~Ei~~Aell~~~~p~~e~vrfvnSGTEA 121 (432)
T COG0001 47 LTDVDGNEYIDYVLGWGPLILGH-AHPAVVEAVQEQLERGLS----FGAPTELEVELAELLIERVPSIEKVRFVNSGTEA 121 (432)
T ss_pred EEeCCCCEeeehhccCcccccCC-CCHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHhcCcccEEEEecchhHH
Confidence 468999999999764 35566 488899988653 34431 222245556788999999886 899999999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc---------C------CcEEEEeeCCCHHHH
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT---------K------MVEVFVYKHCDMSHL 242 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~---------~------g~~v~~~~~~D~~~L 242 (334)
++.+|+. ++. .|+++.+|.++..+|+..=..+--+... . -..+..++.||++.+
T Consensus 122 tmsAiRl-ARa----------~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al 190 (432)
T COG0001 122 TMSAIRL-ARA----------YTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEAL 190 (432)
T ss_pred HHHHHHH-HHH----------hhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHH
Confidence 9999985 442 4567888888988997632221111000 0 124667889999999
Q ss_pred HHHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEe
Q 019931 243 KTLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVG 318 (334)
Q Consensus 243 e~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~ 318 (334)
++++++.+.+...|++|++-+..|.+.| |++|++||++||++||.||+++..-+. -.|.-.+|++.|| +.
T Consensus 191 ~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~--~gGaq~~~gi~PD----lt 264 (432)
T COG0001 191 EEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVA--LGGAQGYYGVEPD----LT 264 (432)
T ss_pred HHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccC--CcccccccCcCcc----hh
Confidence 9999987668899999999998898877 889999999999999999999843222 1345568999986 45
Q ss_pred cCcccccC
Q 019931 319 TLSKAAGC 326 (334)
Q Consensus 319 SlsKa~G~ 326 (334)
||+|.+|.
T Consensus 265 tlGKiIGG 272 (432)
T COG0001 265 TLGKIIGG 272 (432)
T ss_pred hhhhhhcC
Confidence 99999973
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=177.96 Aligned_cols=208 Identities=20% Similarity=0.203 Sum_probs=146.6
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC-CCcEEEeccHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK-KEDCLLCPTGFAAN 178 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g-~e~alv~~sG~~An 178 (334)
+|.+|++||||.++ ..||. +||+|++++.+.. .+. . ++..++...+|.++|+++++ .+++++++||++|+
T Consensus 43 ~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~---~-~~~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~ 117 (423)
T TIGR00713 43 YDVDGNEYIDYVLSWGPLILGH-AHPRVVEAVKEALERGT---S-YGAPTEAEILLAKEIISRVPSVEMVRFVNSGTEAT 117 (423)
T ss_pred EeCCCCEEEEccccccccccCC-CCHHHHHHHHHHHHhCC---c-CCCCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHH
Confidence 56788999999875 23666 5899999876543 332 1 22235667899999999876 35788889999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh---------c------CCcEEEEeeCCCHHHHH
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER---------T------KMVEVFVYKHCDMSHLK 243 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~---------~------~g~~v~~~~~~D~~~Le 243 (334)
.++++....- +++..+|..+..+|+.......++.. . ....++.++++|+++|+
T Consensus 118 e~Alk~ar~~-----------~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 186 (423)
T TIGR00713 118 MSAVRLARGY-----------TGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALE 186 (423)
T ss_pred HHHHHHHHHh-----------hCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHH
Confidence 9999864431 23466777788888853222211100 0 01235667889999999
Q ss_pred HHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEec
Q 019931 244 TLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGT 319 (334)
Q Consensus 244 ~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~S 319 (334)
+++++...++++|++|++++++|.+.| +++|+++|++||++||+||+|....+|. .+..+++++.| ||+ |
T Consensus 187 ~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~--~~~~~~~~~~p--Di~--t 260 (423)
T TIGR00713 187 EVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVAL--GGAQEYFGVEP--DLT--T 260 (423)
T ss_pred HHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCc--chhHHHhCCCc--chh--h
Confidence 999754346789999999999998877 7899999999999999999996322221 23345677766 444 8
Q ss_pred CcccccC--CccEEee
Q 019931 320 LSKAAGC--QGGFIAC 333 (334)
Q Consensus 320 lsKa~G~--~GG~i~~ 333 (334)
|||++|. ..|++++
T Consensus 261 ~sK~l~~G~pig~v~~ 276 (423)
T TIGR00713 261 LGKIIGGGLPVGAFGG 276 (423)
T ss_pred hhhhhcCCCceeeeeE
Confidence 9999973 2467665
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=178.23 Aligned_cols=160 Identities=18% Similarity=0.141 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+...+||++||+++|.+.+++++||++|+..++.+++++ ||.|++....+......+.......+
T Consensus 64 ~p~~~~Le~~lA~l~G~~~~~~~~sG~~Ai~~~l~~~l~~--------------Gd~Vl~~~~~y~~~~~~~~~~~~~~G 129 (398)
T PRK07504 64 NPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQVKA--------------GDHVVAARALFGSCRYVVETLLPRYG 129 (398)
T ss_pred CchHHHHHHHHHHHhCCCeeeEecCHHHHHHHHHHHHhCC--------------CCEEEEcCCchhHHHHHHHHHHhhcC
Confidence 3667999999999999999999999999998888777654 77788777666654433322112237
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
++++.++..|++++++++++ ++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+++.. .
T Consensus 130 ~~v~~vd~~d~e~l~~ai~~---~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~---------~ 197 (398)
T PRK07504 130 IESTLVDGLDLDNWEKAVRP---NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQK---------P 197 (398)
T ss_pred eEEEEECCCCHHHHHHhcCc---CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCC---------c
Confidence 88888888899999998864 78999999999999999999999999999999999999999775421 1
Q ss_pred CCCCccEEEecCcccccC----CccEEeeC
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIACR 334 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~~ 334 (334)
+..++|+++.|++|.|++ .||+|+++
T Consensus 198 ~~~gaDivv~S~sK~l~g~g~~~GG~vv~~ 227 (398)
T PRK07504 198 LELGAHIVVYSATKHIDGQGRCLGGVVLSD 227 (398)
T ss_pred hhhCCCEEEeeccccccCCccceEEEEEeC
Confidence 223579999999999975 46788764
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=176.56 Aligned_cols=159 Identities=18% Similarity=0.119 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+...+||++|+++.|.+.+++++||++|+..++.+++++ ||.|++....|......+.......+
T Consensus 60 ~p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all~~--------------Gd~Vl~~~~~y~~t~~~~~~~~~~~g 125 (388)
T PRK07811 60 NPTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVLRP--------------GDHIVIPNDAYGGTFRLIDKVFTRWG 125 (388)
T ss_pred CccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHhCC--------------CCEEEEcCCCchHHHHHHHHhCcCCC
Confidence 3667899999999999999999999999999999998764 77888877777755443332222237
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
.++..++..|+++|++++++ ++++|++++++||+|.+.|+++|.++|+++|++||+|++|+.+..+. .
T Consensus 126 i~~~~~d~~d~e~l~~~i~~---~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~---------p 193 (388)
T PRK07811 126 VEYTPVDLSDLDAVRAAITP---RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQ---------P 193 (388)
T ss_pred eEEEEeCCCCHHHHHHhcCc---CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCC---------c
Confidence 78888888899999998864 78999999999999999999999999999999999999998764421 1
Q ss_pred CCCCccEEEecCcccccCC----ccEEee
Q 019931 309 CERDVDICVGTLSKAAGCQ----GGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~~----GG~i~~ 333 (334)
+..++||++.|++|.+++. ||+|++
T Consensus 194 ~~~gaDivv~S~sK~l~g~~~~~gG~vv~ 222 (388)
T PRK07811 194 LALGADVVVHSTTKYIGGHSDVVGGALVT 222 (388)
T ss_pred hhhCCcEEEecCceeecCCCCcEEEEEEE
Confidence 2235789999999999863 687765
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-19 Score=175.93 Aligned_cols=205 Identities=19% Similarity=0.179 Sum_probs=143.7
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhcC--CCCccccccCchHHHHHHHHHHHhHh--C--C-CcEEEe-c
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHGM--GPRGSALICGYTNYHRLLESCLADLK--K--K-EDCLLC-P 172 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g~--g~~~sr~~~G~~~~~~~LE~~La~~~--g--~-e~alv~-~ 172 (334)
+|.+|++||||.++ ..||. +||+|.+|+++.-. +.... . ...++...+|.++|++.. + . ..++++ +
T Consensus 30 ~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~~-~-~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~ 106 (412)
T TIGR02407 30 WDEDGKEYIDFFAGAGALNYGH-NNPKLKQALIDYLADDGIIHS-L-DMATEAKREFLETFNEIILKPRGLDYKVQFPGP 106 (412)
T ss_pred EeCCCCEEEEcccchhhccCCC-CCHHHHHHHHHHHhhccceec-c-ccCcHHHHHHHHHHHHhccCccCCCceEEEeCC
Confidence 56788999999875 34677 59999998865422 22111 1 112566688999998864 2 2 245565 8
Q ss_pred cHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc-----CC---cEEEEeeC--------
Q 019931 173 TGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT-----KM---VEVFVYKH-------- 236 (334)
Q Consensus 173 sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~-----~g---~~v~~~~~-------- 236 (334)
||++|+.++++.... .+++..+|.....+|+.....+.++... .+ ..+..++.
T Consensus 107 sGseA~e~AlklAr~-----------~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 175 (412)
T TIGR02407 107 TGTNAVESALKLARK-----------VTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDV 175 (412)
T ss_pred CchHHHHHHHHHHhh-----------hcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccch
Confidence 999999999996443 2345567778888999877666554210 01 12233333
Q ss_pred CCHHHHHHHHhcCC---CCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccC
Q 019931 237 CDMSHLKTLLSCCT---MRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFN 308 (334)
Q Consensus 237 ~D~~~Le~~l~~~~---~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~ 308 (334)
++++.+++++.+.. .+..+|++|++.++.|.+.| +++|+++|++||++||+||+++ | +|++|.+++ ++++
T Consensus 176 ~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G-~GRtG~~~a~~~~~ 253 (412)
T TIGR02407 176 DTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQA-G-CGRTGTFFSFEPAG 253 (412)
T ss_pred hHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCccchhHHhcccC
Confidence 34777888886532 25688999999999997543 8999999999999999999998 5 799998764 6678
Q ss_pred CCCCccEEEecCcccccCCc
Q 019931 309 CERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~~G 328 (334)
+.| ||+ +|+|++|+.|
T Consensus 254 v~P--Di~--~~~K~lg~~G 269 (412)
T TIGR02407 254 IEP--DIV--CLSKSISGYG 269 (412)
T ss_pred CCC--CEE--EechhccCCc
Confidence 877 455 7999998633
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-19 Score=176.39 Aligned_cols=211 Identities=18% Similarity=0.198 Sum_probs=146.5
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~A 177 (334)
+|.+|++||||.++ ..||. +||+|.+|+.+. ..+...+.. ...++...+|.++|++..+. +++++++||++|
T Consensus 36 ~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~~~-~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEA 113 (443)
T PRK08360 36 WDIEGNEYIDFLSDAAVQNVGH-NNPRVVKAIKEQTDKLIHYTPI-YGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDA 113 (443)
T ss_pred EECCCCEEEEccccHhhcccCC-CCHHHHHHHHHHHHhccCcccc-ccCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHH
Confidence 56788999999775 45777 489999977543 333222211 22356778999999998764 578888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc----------CCcEEEEeeC-----------
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT----------KMVEVFVYKH----------- 236 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~----------~g~~v~~~~~----------- 236 (334)
+.++++.... .+++..+|.....+|+.....+.++... .+.....|+.
T Consensus 114 ve~AlklAr~-----------~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (443)
T PRK08360 114 NDGAIKFARA-----------YTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPG 182 (443)
T ss_pred HHHHHHHHHH-----------hcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchh
Confidence 9999995432 2345667777888999876655543210 0111122221
Q ss_pred ----CCHHHHHHHHhcC--CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-c
Q 019931 237 ----CDMSHLKTLLSCC--TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-E 305 (334)
Q Consensus 237 ----~D~~~Le~~l~~~--~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~ 305 (334)
++.+.+++++++. ..++++|++|++.+++|.+.| +++|.++|++||++||+||+|+. +|++|.+++ +
T Consensus 183 ~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~gr~G~~~a~~ 260 (443)
T PRK08360 183 SCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSG--LGRTGKWFAIE 260 (443)
T ss_pred hhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC--CCcCccchhhh
Confidence 1244566777532 246899999999999997766 88999999999999999999994 788887653 5
Q ss_pred ccCCCCCccEEEecCcccccC--CccEEee
Q 019931 306 QFNCERDVDICVGTLSKAAGC--QGGFIAC 333 (334)
Q Consensus 306 ~~~~~~~~Div~~SlsKa~G~--~GG~i~~ 333 (334)
++++.| ||+ ||||++|. ..|++++
T Consensus 261 ~~~~~p--Dii--tlsK~l~~G~pigav~~ 286 (443)
T PRK08360 261 HFGVEP--DII--TLGKPLGGGLPISATIG 286 (443)
T ss_pred hcCCCC--CEE--EecccccCCceeEEEEE
Confidence 678776 454 89999984 2366665
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.9e-19 Score=173.58 Aligned_cols=211 Identities=15% Similarity=0.159 Sum_probs=144.9
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC---CcEEEeccHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK---EDCLLCPTGFA 176 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~---e~alv~~sG~~ 176 (334)
+|.+|++||||.++ ..||. +||+|.+|+++. ........ ....++...+|.++|+++.+. +++++++||++
T Consensus 35 ~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~l~~~~~-~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGse 112 (425)
T PRK07495 35 WDKEGRRYIDFAAGIAVVNTGH-RHPRVIAAVKAQLDRFTHTCH-QVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAE 112 (425)
T ss_pred EeCCCCEEEEccccHHhhccCC-CCHHHHHHHHHHHhhccCccc-CccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHH
Confidence 46778999999875 34777 589999987653 22221111 122356668899999998753 57888899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh----cCC-----cEEEEeeCCC---------
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER----TKM-----VEVFVYKHCD--------- 238 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~----~~g-----~~v~~~~~~D--------- 238 (334)
||.++++.... .+++..+|.....+|+.....+.++.. ..+ ..+..++.++
T Consensus 113 A~e~AlklAr~-----------~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 181 (425)
T PRK07495 113 AVENAVKIARA-----------ATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQ 181 (425)
T ss_pred HHHHHHHHHHH-----------hhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHH
Confidence 99999996443 234566777888899987655544321 000 1222333322
Q ss_pred -HHHHHHHHhc--CCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCC
Q 019931 239 -MSHLKTLLSC--CTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCE 310 (334)
Q Consensus 239 -~~~Le~~l~~--~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~ 310 (334)
.+++++++++ .+.+.++|++|++++..|.+.| +++|+++|++||++||+||+|+ | +|++|.++ .+++++.
T Consensus 182 ~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-~gr~G~~~a~~~~gv~ 259 (425)
T PRK07495 182 SLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQT-G-FARTGKLFAMEHHEVA 259 (425)
T ss_pred HHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-c-CCcCCCceeecccCCC
Confidence 4556777753 1246789999999998885543 8899999999999999999998 5 78888764 4567776
Q ss_pred CCccEEEecCcccccC--CccEEee
Q 019931 311 RDVDICVGTLSKAAGC--QGGFIAC 333 (334)
Q Consensus 311 ~~~Div~~SlsKa~G~--~GG~i~~ 333 (334)
| || .||||++|. ..|++++
T Consensus 260 p--Di--~tlsK~l~~G~pigav~~ 280 (425)
T PRK07495 260 A--DL--TTMAKGLAGGFPLAAVTG 280 (425)
T ss_pred C--CE--EeehhhhcCCccceEEEE
Confidence 6 44 599999973 2345554
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-19 Score=177.09 Aligned_cols=218 Identities=18% Similarity=0.176 Sum_probs=146.7
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFA 176 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~ 176 (334)
.+|.+|++||||.+. ..+|.. ||+|.+|+++. ..+...+......++...+|.++|+++.+ .+++++++||++
T Consensus 44 l~D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGse 122 (456)
T PRK07480 44 LWDSEGNKILDGMAGLWCVNVGYG-RKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSE 122 (456)
T ss_pred EEeCCCCEEEEccchHHHhcCCCC-CHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHH
Confidence 356788999999875 346774 89999977543 33222222222346888999999999885 467888899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc-----CC---cEEEEeeCC-----------
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT-----KM---VEVFVYKHC----------- 237 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~-----~g---~~v~~~~~~----------- 237 (334)
|++++++....... ..+ .+++..+|..+..+|+....++.++... .+ ..+..++..
T Consensus 123 A~e~AlklAr~~~~--~~g---~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 197 (456)
T PRK07480 123 ANDTVLRMVRHYWA--LKG---KPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTP 197 (456)
T ss_pred HHHHHHHHHHHHHH--hcC---CCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCCh
Confidence 99999986533100 000 0123456667888999876665543210 00 011111110
Q ss_pred ----C--HHHHHHHHhc-CCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-cc
Q 019931 238 ----D--MSHLKTLLSC-CTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AE 305 (334)
Q Consensus 238 ----D--~~~Le~~l~~-~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~ 305 (334)
| .++|++.+.+ ...+..+|++|++.+..|.+.| |++|++||++||++||+||+++ | +|++|.++ .+
T Consensus 198 ~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~t-G-fGRtG~~~a~~ 275 (456)
T PRK07480 198 EEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVIC-G-FGRTGEWFGSQ 275 (456)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCcCcchhhhh
Confidence 1 2566655532 2346789999999999888766 9999999999999999999998 4 79999876 47
Q ss_pred ccCCCCCccEEEecCcccccC----CccEEe
Q 019931 306 QFNCERDVDICVGTLSKAAGC----QGGFIA 332 (334)
Q Consensus 306 ~~~~~~~~Div~~SlsKa~G~----~GG~i~ 332 (334)
++++.|| |+ +|+|++|. .|++++
T Consensus 276 ~~gv~PD--iv--~~gK~l~gG~~Pi~av~~ 302 (456)
T PRK07480 276 HFGIKPD--LM--TIAKGLTSGYIPMGAVGV 302 (456)
T ss_pred hcCCCCC--ee--eeehhhccCCccceEEEE
Confidence 8898874 54 89999963 455544
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-19 Score=176.71 Aligned_cols=209 Identities=18% Similarity=0.164 Sum_probs=144.4
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~A 177 (334)
++.+|++||||.+. ..||. +||+|.+++++. ......+.... .++...+|.++|+++.+ .+++++++||++|
T Consensus 44 ~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~l~~~~~~~~-~~~~~~~la~~L~~~~p~~~~~v~f~~sGseA 121 (445)
T PRK09221 44 TDADGRKILDGTAGLWCCNAGH-GRPEIVEAVARQAATLDYAPAFQM-GHPLAFELAERLAELAPGGLDHVFFTNSGSES 121 (445)
T ss_pred EeCCCCEEEEccccHhhccCCC-CCHHHHHHHHHHHHhccCcccccc-CCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHH
Confidence 56788999999775 45777 589999877543 22222222222 24666889999999874 4678888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc----------CCcEEEEeeCC----------
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT----------KMVEVFVYKHC---------- 237 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~----------~g~~v~~~~~~---------- 237 (334)
+.++++....- +.... ..++..+|.....+|+.....+.++... .+...+.++.+
T Consensus 122 ve~AlklAr~~----~~~~g-~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (445)
T PRK09221 122 VDTALKIALAY----HRARG-QGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQ 196 (445)
T ss_pred HHHHHHHHHHH----HHhcC-CCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCCh
Confidence 99999864431 00000 0123456777888998766554433100 01111111110
Q ss_pred ------CHHHHHHHHhcCC-CCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-cc
Q 019931 238 ------DMSHLKTLLSCCT-MRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AE 305 (334)
Q Consensus 238 ------D~~~Le~~l~~~~-~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~ 305 (334)
..++|+++++... .+..+|++|+++++.|.+.| |++|+++|++||++||+||+|+ | +|++|.++ .+
T Consensus 197 ~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~t-G-~GRtG~~~~~~ 274 (445)
T PRK09221 197 PEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVIT-G-FGRLGAAFAAE 274 (445)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-C-CCcCchhhHHH
Confidence 1357888886542 46789999999999999988 9999999999999999999998 5 88999886 57
Q ss_pred ccCCCCCccEEEecCccccc
Q 019931 306 QFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 306 ~~~~~~~~Div~~SlsKa~G 325 (334)
++++.| ||+ +|+|+++
T Consensus 275 ~~gv~P--Di~--~~gK~l~ 290 (445)
T PRK09221 275 RFGVTP--DII--TFAKGLT 290 (445)
T ss_pred hcCCCC--CEE--Eeccccc
Confidence 888877 554 8999995
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-19 Score=173.22 Aligned_cols=158 Identities=16% Similarity=0.121 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+...+||++||++.+.+.+++++||++|+..++.+++++ ||.|++....|.....-+.......|
T Consensus 60 npt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~~--------------GD~Vvv~~~~Y~~t~~l~~~~l~~~G 125 (394)
T PRK09028 60 TPTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLKA--------------GDHLLMVDSCYEPTRDLCDKILKGFG 125 (394)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCC--------------CCEEEEECCCcHHHHHHHHHhhhhcc
Confidence 3566899999999999999999999999999999988775 67676655556554432211111237
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
.++..++..|.+.+++++++ ++++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.++. ..+
T Consensus 126 i~v~~v~~~~~e~l~~~l~~---~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~---------~~P 193 (394)
T PRK09028 126 IETTYYDPMIGEGIRELIRP---NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPIN---------SRP 193 (394)
T ss_pred eEEEEECCCCHHHHHHhcCc---CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccccc---------CCc
Confidence 78888887788889888864 799999999999999999999999999999999999999997642 123
Q ss_pred CCCCccEEEecCcccccCC----ccEEe
Q 019931 309 CERDVDICVGTLSKAAGCQ----GGFIA 332 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~~----GG~i~ 332 (334)
+..++||++.|++|.+++. ||+++
T Consensus 194 l~~GaDivv~S~tK~l~Gh~d~~~G~~~ 221 (394)
T PRK09028 194 FEMGVDISIQAATKYIVGHSDVMLGTAT 221 (394)
T ss_pred cccCceEEEEeCCeEecCCCCEEEEEEE
Confidence 3456899999999999875 46554
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-19 Score=176.49 Aligned_cols=158 Identities=19% Similarity=0.200 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+...+||++|+++.|.+.+++++||++|+..++.+++++ ||.|++....|......+.......+
T Consensus 62 ~p~~~~le~~lA~l~g~~~al~~~SG~~Ai~~al~all~p--------------Gd~VIv~~~~y~~t~~~~~~~~~~~G 127 (427)
T PRK05994 62 NPTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQP--------------GDEFIAARKLYGGSINQFGHAFKSFG 127 (427)
T ss_pred CccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCC--------------CCEEEEecCcchhHHHHHHHHHHhcC
Confidence 3567899999999999999999999999999999988765 67777776666654433321111237
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
++++.++..|++++++++++ ++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+... ..
T Consensus 128 ~~v~~vd~~d~~~l~~ai~~---~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~---------~p 195 (427)
T PRK05994 128 WQVRWADADDPASFERAITP---RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLI---------RP 195 (427)
T ss_pred cEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccC---------Cc
Confidence 88888888899999998864 7899999999999999999999999999999999999999876431 12
Q ss_pred CCCCccEEEecCcccccC----CccEEe
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIA 332 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~ 332 (334)
+..++|+++.|++|.+|+ .||+|+
T Consensus 196 l~~gaDivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 196 IEHGADIVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred cccCCcEEEEcCccccCCCCCcEEEEEE
Confidence 334689999999999986 456665
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-19 Score=170.40 Aligned_cols=191 Identities=15% Similarity=0.165 Sum_probs=148.4
Q ss_pred CCCCHHHHHHHHHhcCC--CCccccccCchHHHHHHHHHHHhHhCC-----CcEEEeccHHHHHHHHHHHHhhhhhhccC
Q 019931 122 LSSHPTIAKAAARHGMG--PRGSALICGYTNYHRLLESCLADLKKK-----EDCLLCPTGFAANMAVIVAVGNIASLLAG 194 (334)
Q Consensus 122 l~~~p~v~~a~~~~g~g--~~~sr~~~G~~~~~~~LE~~La~~~g~-----e~alv~~sG~~An~~ai~al~~~~~~~~~ 194 (334)
...+.-|.+++++...+ ...+...+|...+...|.+++++++|. ++++++.++++|+..++.+++++
T Consensus 43 ~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~------ 116 (420)
T KOG0257|consen 43 FPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNP------ 116 (420)
T ss_pred CCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcCC------
Confidence 33344466677665433 234455677788889999999998873 45888899999999999999976
Q ss_pred CCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------------CCHHHHHHHHhcCCCCcEEEEEcCC
Q 019931 195 DEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------------CDMSHLKTLLSCCTMRKKVVVTDSL 261 (334)
Q Consensus 195 ~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------------~D~~~Le~~l~~~~~~~~lVv~e~v 261 (334)
||.|++-++++.+.+..++++ |.+.+.++. .|++.||.++.+ +|++|++++|
T Consensus 117 --------GDeVii~eP~fd~Y~~~~~ma----G~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~---kTk~Ii~ntP 181 (420)
T KOG0257|consen 117 --------GDEVIVFEPFFDCYIPQVVMA----GGTPVFVPLKPKEGNVSSSDWTLDPEELESKITE---KTKAIILNTP 181 (420)
T ss_pred --------CCEEEEecCcchhhhhHHhhc----CCcceeeccccccccccCccccCChHHHHhhccC---CccEEEEeCC
Confidence 788888888888999888888 666665542 389999999986 8999999999
Q ss_pred CCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCC-CcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 262 FSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKN-GGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 262 ~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~-G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
+||+|.+.+ |++|++||++||.++|.||+|...++... ---++...| ..+..|-++|+||+||++| ||++++
T Consensus 182 hNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPg-m~ertitvgS~gKtf~~TGWrlGW~igp 260 (420)
T KOG0257|consen 182 HNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPG-MYERTITVGSFGKTFGVTGWRLGWAIGP 260 (420)
T ss_pred CCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCc-hhheEEEeccccceeeeeeeeeeeeech
Confidence 999999988 88999999999999999999998777532 111221222 2345689999999999999 988763
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-19 Score=173.04 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+....||++||++.|.+.+++++||++|+..++.+++++ ||.|++....|......+.......+
T Consensus 52 npt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all~~--------------Gd~Il~~~~~y~~~~~~~~~~~~~~g 117 (388)
T PRK08861 52 NPNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALLGP--------------DDLIVAPHDCYGGTYRLFNTRANKGD 117 (388)
T ss_pred CchHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCC--------------CCEEEEcCCchHHHHHHHHHHHhcCC
Confidence 3667999999999999999999999999999999988764 78888877777654443322211236
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
.++..++..|++++++++++ ++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|..+++. .+
T Consensus 118 i~v~~vd~~d~e~l~~~i~~---~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~---------~p 185 (388)
T PRK08861 118 FKVQFVDQSDAAALDAALAK---KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQ---------KP 185 (388)
T ss_pred eEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccC---------CC
Confidence 78888887899999988864 7899999999999999999999999999999999999999987532 12
Q ss_pred CCCCccEEEecCcccccC----CccEEee
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+..++|+++.|++|.+++ .||+|++
T Consensus 186 l~~GaDivv~S~tK~l~G~~d~~gG~i~~ 214 (388)
T PRK08861 186 LELGADFVIHSTTKYINGHSDVIGGVLIT 214 (388)
T ss_pred cccCCCEEEeecceeccCCCcceeEEEEe
Confidence 334689999999999975 3688765
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-19 Score=171.27 Aligned_cols=203 Identities=15% Similarity=0.139 Sum_probs=152.5
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC----C-cEEEeccHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK----E-DCLLCPTGFAANMAVI 182 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~----e-~alv~~sG~~An~~ai 182 (334)
..+++|..++ ..+..+|.+.+++++. ..+...+....|...+++++++.+.++++. + .+++++++++|+..++
T Consensus 30 ~~~i~l~~g~-~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~ 108 (386)
T PRK09082 30 HGAINLSQGF-PDFDGPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAI 108 (386)
T ss_pred CCEEEecCCC-CCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHH
Confidence 5678998864 4555678888876553 233334444567778888888888888774 2 4666678899999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEEE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKVV 256 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lV 256 (334)
.+++.+ ||.|++..+.|..+...++.. |.+++.++.+ |++++++++++ ++++|
T Consensus 109 ~~~~~~--------------gd~Vli~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~v 167 (386)
T PRK09082 109 LALVRP--------------GDEVIVFDPSYDSYAPAIELA----GGRAVRVALQPPDFRVDWQRFAAAISP---RTRLI 167 (386)
T ss_pred HHHcCC--------------CCEEEEeCCCchhhHHHHHHc----CCEEEEEecCcccccCCHHHHHHhcCc---cceEE
Confidence 888764 788999999999888888776 7888888753 67888888753 67888
Q ss_pred EEcCCCCCCCCcc---CHHHHHHHHHHcCCEEEEecCcccccccCC-CcccccccCCCCCccEEEecCcccccCCc---c
Q 019931 257 VTDSLFSMDGDFA---PMVELVKLRRKYGFLLVLDDAHGTFVCGKN-GGGVAEQFNCERDVDICVGTLSKAAGCQG---G 329 (334)
Q Consensus 257 v~e~v~n~~G~~~---pL~~L~ela~k~ga~LivDeAh~~Gv~G~~-G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G 329 (334)
++++++||+|.+. ++++|.++|++||+++|+||+|...+++.. +..+....+. .+..|+++||||+||+.| |
T Consensus 168 ~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG 246 (386)
T PRK09082 168 ILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPEL-RERAFVVSSFGKTYHVTGWKVG 246 (386)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCc-cCcEEEEeechhhccchhhhhh
Confidence 8899999999774 588899999999999999999987766432 2222222222 234699999999999888 9
Q ss_pred EEeeC
Q 019931 330 FIACR 334 (334)
Q Consensus 330 ~i~~~ 334 (334)
|++++
T Consensus 247 ~iv~~ 251 (386)
T PRK09082 247 YCVAP 251 (386)
T ss_pred hhhCC
Confidence 98764
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-19 Score=176.30 Aligned_cols=158 Identities=15% Similarity=0.164 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||++++++.|.+++++|+||++|+..++.+++++ ||.|++....+......+.......|
T Consensus 60 nPtv~~lE~~la~leg~~~av~~~SG~aAi~~al~all~~--------------GD~VI~~~~~Y~~T~~~~~~~l~~~G 125 (432)
T PRK06702 60 NPTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNICSS--------------GDHLLCSSTVYGGTFNLFGVSLRKLG 125 (432)
T ss_pred CcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhcCC--------------CCEEEECCCchHHHHHHHHHHHHHCC
Confidence 3777999999999999999999999999999999988764 78888887777655554332212238
Q ss_pred cEEEEeeCC-CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCccccccc
Q 019931 229 VEVFVYKHC-DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 229 ~~v~~~~~~-D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
+++..++.+ |++++++++++ +|++|++|++.||.+.+.|+++|+++|+++|+++|+|++++...+ ..
T Consensus 126 i~v~~vd~~~d~~~l~~~I~~---~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~---------~~ 193 (432)
T PRK06702 126 IDVTFFNPNLTADEIVALAND---KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYL---------CQ 193 (432)
T ss_pred CEEEEECCCCCHHHHHHhCCc---CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchhh---------CC
Confidence 899888875 89999999975 789999999999999999999999999999999999999875432 12
Q ss_pred CCCCCccEEEecCcccccCC----ccEEe
Q 019931 308 NCERDVDICVGTLSKAAGCQ----GGFIA 332 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~~----GG~i~ 332 (334)
++..++||++.|+||.+|+. ||.++
T Consensus 194 pl~~GADIvv~S~TKy~~Ghsd~l~G~v~ 222 (432)
T PRK06702 194 AFEHGANIIVHSTTKYIDGHASSLGGIVI 222 (432)
T ss_pred hhhcCCCEEEEccccccCCCcceeceEEE
Confidence 34567899999999999763 45554
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8e-19 Score=175.32 Aligned_cols=205 Identities=17% Similarity=0.136 Sum_probs=143.3
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFA 176 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~ 176 (334)
.+|.+|++||||.+. ..||. +||+|.+|+.+. ......+.. ...++...+|.++|+++.+. +++++++||++
T Consensus 47 l~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~Ai~~ql~~~~~~~~~-~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsE 124 (457)
T PRK05639 47 IEDVDGNVFIDFLAGAAAASTGY-SHPKLVKAVQEQVALIQHSMIG-YTHSERAIRVAEKLAEISPIENPKVLFGLSGSD 124 (457)
T ss_pred EEeCCCCEEEECCcCHHhhccCC-CCHHHHHHHHHHHHhccccccC-ccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHH
Confidence 356888999999875 45777 589999877543 322211111 11246668899999998753 57888899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh----cCC-----cEEEEeeCC----------
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER----TKM-----VEVFVYKHC---------- 237 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~----~~g-----~~v~~~~~~---------- 237 (334)
||.++++.... .+++..+|.....+|+.....+.++.. ..+ ..+..++.+
T Consensus 125 A~e~AlklAr~-----------~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 193 (457)
T PRK05639 125 AVDMAIKVSKF-----------STRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGIN 193 (457)
T ss_pred HHHHHHHHHHH-----------hcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCcccccccccc
Confidence 99999996442 234566777888899987666654321 000 112233332
Q ss_pred ---CH--------HHHHHHHhc---CCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCC
Q 019931 238 ---DM--------SHLKTLLSC---CTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKN 299 (334)
Q Consensus 238 ---D~--------~~Le~~l~~---~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~ 299 (334)
|. +.|++++.. .+.+...|++|++.+..|.+.| +++|+++|++||++||+||+|+ | +|++
T Consensus 194 ~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G-~Grt 271 (457)
T PRK05639 194 GYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQT-G-IGRT 271 (457)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-c-cCcC
Confidence 22 235554422 1346789999999998887665 8999999999999999999998 6 8999
Q ss_pred Cccc-ccccCCCCCccEEEecCcccccC
Q 019931 300 GGGV-AEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 300 G~g~-~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
|.++ .+++++.| ||+ +|+|++|.
T Consensus 272 G~~~a~~~~gv~P--Div--~~gK~l~g 295 (457)
T PRK05639 272 GKWFASEWFEVKP--DLI--IFGKGVAS 295 (457)
T ss_pred chHHHHHhcCCCC--CEE--EechhhcC
Confidence 9886 47889877 566 59999973
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-19 Score=175.42 Aligned_cols=159 Identities=17% Similarity=0.135 Sum_probs=128.3
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||++++++.|.+.+++++||+.|+..++.+++++ ||.|++....|..............|
T Consensus 64 ~p~~~~le~~lA~l~g~~~~i~~~sG~~Al~~~l~~ll~~--------------Gd~Viv~~~~y~~t~~~~~~~~~~~G 129 (403)
T PRK07503 64 NPTLALLEQRMASLEGGEAAVALASGMGAITATLWTLLRP--------------GDEVIVDQTLYGCTFAFLHHGLGEFG 129 (403)
T ss_pred CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcCC--------------CCEEEEccCccchHHHHHHHHHhhCC
Confidence 3667999999999999999999999999999999887654 78888877777654433321111238
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
+++..++..|++++++++++ ++++|++++++||+|.+.|+++|.++|+++|++||+|++|+.+..+. .
T Consensus 130 ~~v~~vd~~d~~~l~~~i~~---~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~---------~ 197 (403)
T PRK07503 130 VTVRHVDLTDPAALKAAISD---KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQR---------P 197 (403)
T ss_pred EEEEEeCCCCHHHHHHhcCc---cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCC---------c
Confidence 88888888899999998864 78999999999999999999999999999999999999998764321 1
Q ss_pred CCCCccEEEecCcccccCC----ccEEee
Q 019931 309 CERDVDICVGTLSKAAGCQ----GGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~~----GG~i~~ 333 (334)
+..++||++.|++|.+|+. ||++++
T Consensus 198 l~~g~Di~v~S~tK~l~g~gd~~gG~v~~ 226 (403)
T PRK07503 198 LELGADLVVHSATKYLGGHGDITAGLVVG 226 (403)
T ss_pred hhhCCCEEEccccccccCCCceeEEEEEc
Confidence 1235689999999999864 577765
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-19 Score=175.37 Aligned_cols=154 Identities=15% Similarity=0.114 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||+++|++.|.+++++++||++|+..++.+++++ ||.|++....|.+....+.......|
T Consensus 63 ~p~~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~ll~~--------------Gd~Vi~~~~~y~~t~~~~~~~l~~~G 128 (433)
T PRK08134 63 NPTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMGA--------------GSHIVASSALYGGSHNLLHYTLRRFG 128 (433)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCC--------------CCEEEEeCCccHHHHHHHHHHHhhCC
Confidence 4778999999999999999999999999999999888654 77788777777665444432112238
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
++++.++.+|+++|+++|++ +|++|+++++.|++|.+.|+++|.++|+++|+++|+|.+|+.+.+. ..
T Consensus 129 i~v~~vd~~d~~~l~~~i~~---~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~---------~p 196 (433)
T PRK08134 129 IETTFVKPGDIDGWRAAIRP---NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLL---------RP 196 (433)
T ss_pred eEEEEECCCCHHHHHHhcCC---CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccC---------Cc
Confidence 89999988899999999875 7999999999999999999999999999999999999999987541 12
Q ss_pred CCCCccEEEecCcccccCCc
Q 019931 309 CERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~~G 328 (334)
+..++|+++.|.+|.+|+.|
T Consensus 197 l~~GaD~vv~S~tK~l~g~g 216 (433)
T PRK08134 197 FEHGADLVYHSATKFLGGHG 216 (433)
T ss_pred hhcCCCEEEeccccccCCCC
Confidence 34568999999999998754
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-19 Score=176.89 Aligned_cols=159 Identities=23% Similarity=0.247 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+...+||++|+++.|.+.+++++||++|+..++.+++++ ||.|++....+......+.......+
T Consensus 57 ~pt~~~Le~~lA~l~g~~~~l~~ssG~~Ai~~al~al~~~--------------Gd~Vl~~~~~Y~~t~~~~~~~l~~~g 122 (425)
T PRK06084 57 NPTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTIAEA--------------GDNIVSVAKLYGGTYNLLAHTLPRIG 122 (425)
T ss_pred CchHHHHHHHHHHHhCCCceeEehhHHHHHHHHHHHHhCC--------------CCEEEEeCCCcchHHHHHHHhcccce
Confidence 3667899999999999999999999999999999988765 66666665544433333321111126
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
.++..++..|++++++++++ ++++|++++++||+|.+.|+++|.++|+++|++||+|++|+.+.... .
T Consensus 123 i~v~~~d~~d~e~le~ai~~---~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~---------p 190 (425)
T PRK06084 123 IETRFAAHDDIAALEALIDE---RTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCR---------P 190 (425)
T ss_pred eEEEEECCCCHHHHHHHhcc---CCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCC---------h
Confidence 77777888899999999875 68999999999999999999999999999999999999999765321 1
Q ss_pred CCCCccEEEecCcccccC----CccEEee
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+..++||++.|++|.+|+ .||+|++
T Consensus 191 ~~~gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 191 FEHGADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred hhcCCCEEEECchhcccccccceeEEEEe
Confidence 233579999999999975 3677764
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.7e-19 Score=173.15 Aligned_cols=203 Identities=16% Similarity=0.169 Sum_probs=142.0
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC---CCcEEEeccHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK---KEDCLLCPTGFA 176 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g---~e~alv~~sG~~ 176 (334)
+|.+|++||||.+. ..||. +||+|.+|+.+. ...... ......++...+|.++|+++.+ .+++++++||++
T Consensus 35 ~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGse 112 (421)
T PRK06777 35 WDVEGREYIDFAAGIAVLNTGH-RHPKVVAAVRQQLDQFTHT-AYQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAE 112 (421)
T ss_pred EeCCCCEEEEcccCHHhhccCC-CCHHHHHHHHHHHhhcccc-cccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHH
Confidence 46778999999875 45777 489999877543 222211 1111234666889999999875 367888899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc----CC-----cEEEEeeCC----------
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT----KM-----VEVFVYKHC---------- 237 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~----~g-----~~v~~~~~~---------- 237 (334)
|+.++++.... .+++..+|.....+|+.....+.++... .+ ..+..++..
T Consensus 113 A~e~AlklAr~-----------~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 181 (421)
T PRK06777 113 AVENAVKIARA-----------YTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEE 181 (421)
T ss_pred HHHHHHHHHHH-----------hhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHH
Confidence 99999986433 2345667778888999876666543210 00 011111211
Q ss_pred CHHHHHHHHhc--CCCCcEEEEEcCCCCCCCC-ccC---HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCC
Q 019931 238 DMSHLKTLLSC--CTMRKKVVVTDSLFSMDGD-FAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCE 310 (334)
Q Consensus 238 D~~~Le~~l~~--~~~~~~lVv~e~v~n~~G~-~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~ 310 (334)
+++++++++++ .+.+..+|++|+++++.|. +.| +++|+++|++||++||+||+|+ | +|++|.++ .+++++.
T Consensus 182 ~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g-~gr~g~~~~~~~~~~~ 259 (421)
T PRK06777 182 ALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQT-G-FARTGKLFAMEYYDVK 259 (421)
T ss_pred HHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CccCCchhhhhhcCCC
Confidence 26678888863 2346789999999999885 345 8999999999999999999999 5 78888765 3667776
Q ss_pred CCccEEEecCccccc
Q 019931 311 RDVDICVGTLSKAAG 325 (334)
Q Consensus 311 ~~~Div~~SlsKa~G 325 (334)
| ||+ ||||++|
T Consensus 260 p--Div--~~sK~l~ 270 (421)
T PRK06777 260 P--DLI--TMAKSLG 270 (421)
T ss_pred C--CEE--eeehhhc
Confidence 6 454 8999997
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-19 Score=172.19 Aligned_cols=157 Identities=18% Similarity=0.131 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCc
Q 019931 150 NYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMV 229 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~ 229 (334)
+..++||+++++++|.+++++|+||++|+..++. ++++ ||.|++....|.+....+.......|+
T Consensus 47 p~~~~le~~la~l~g~~~~l~~~sG~~al~~~l~-ll~~--------------Gd~Vl~~~~~y~~~~~~~~~~~~~~G~ 111 (378)
T TIGR01329 47 PTRTALESLLAKLDKADRAFAFSSGMAALDVITR-LLNN--------------GDEIIAGDDLYGGTDRLLTQVVPRSGV 111 (378)
T ss_pred hHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhCC--------------CCEEEEcCCCchHHHHHHHHHHHHcCc
Confidence 5679999999999999999999999998877665 5543 777887777776655433321122388
Q ss_pred EEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC
Q 019931 230 EVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC 309 (334)
Q Consensus 230 ~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~ 309 (334)
+++.++..|++++++++++ ++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+.... .+
T Consensus 112 ~v~~vd~~d~~~le~~i~~---~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~---------~l 179 (378)
T TIGR01329 112 VVVHVDTTDLDKVKAALGP---KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCN---------PL 179 (378)
T ss_pred EEEEeCCCCHHHHHHhcCc---CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCC---------hh
Confidence 9999998899999998863 78999999999999999999999999999999999999997664311 12
Q ss_pred CCCccEEEecCcccccC----CccEEee
Q 019931 310 ERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 310 ~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
..++|++++|++|.+++ .||++++
T Consensus 180 ~~g~Di~v~S~tK~l~G~~~~~~G~v~~ 207 (378)
T TIGR01329 180 ELGADIVYHSATKFLAGHSDVMAGVLAV 207 (378)
T ss_pred hcCCcEEEEecceeccCCccceeEEEEe
Confidence 23579999999999965 2687765
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-19 Score=176.14 Aligned_cols=211 Identities=16% Similarity=0.081 Sum_probs=143.9
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFA 176 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~ 176 (334)
.++.+|++||||.+. ..||.+ ||+|.+|+++. ......+....-.++...+|.++|++... .+++++++||++
T Consensus 40 l~D~dG~~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSE 118 (459)
T PRK05965 40 LTDASGHQLLDAFAGLWCVNVGYG-QESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSD 118 (459)
T ss_pred EEECCCCEEEECcccHHhccCCCC-CHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCChhH
Confidence 356788999999774 356774 89999987654 22222222111235666889999999874 467788899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh-----cC-----CcEEEEeeC-------CCH
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER-----TK-----MVEVFVYKH-------CDM 239 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~-----~~-----g~~v~~~~~-------~D~ 239 (334)
|+.++++....... ..+ .+++..+|..+..+|+....++.++.. .. +...+.++. +|.
T Consensus 119 Ave~AlKlAr~~~~--~~g---~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (459)
T PRK05965 119 AVDSAVRFIRHYWN--ATG---RPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDP 193 (459)
T ss_pred HHHHHHHHHHHHHH--hcC---CCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCCh
Confidence 99999996432100 000 012355777888899986555444321 00 111121221 232
Q ss_pred --------HHHHHHHhcCC-CCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-cc
Q 019931 240 --------SHLKTLLSCCT-MRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AE 305 (334)
Q Consensus 240 --------~~Le~~l~~~~-~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~ 305 (334)
+++++++.+.. .+...|++|++.+..|.+.| |++|+++|++||++||+||+++. +|++|.++ .+
T Consensus 194 ~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tG--fGRtG~~~a~~ 271 (459)
T PRK05965 194 QAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITG--FGRTGPLFACE 271 (459)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcc--CccCchhhhHh
Confidence 56788886433 46789999999998887655 89999999999999999999984 89999876 46
Q ss_pred ccCCCCCccEEEecCccccc
Q 019931 306 QFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 306 ~~~~~~~~Div~~SlsKa~G 325 (334)
++++.| ||+ +|+|++|
T Consensus 272 ~~gv~P--Div--~~gKgl~ 287 (459)
T PRK05965 272 AEGVVP--DLM--TVAKGLT 287 (459)
T ss_pred hcCCCC--CeE--Eechhhc
Confidence 889887 455 8999996
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.9e-19 Score=176.04 Aligned_cols=210 Identities=17% Similarity=0.099 Sum_probs=143.9
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~A 177 (334)
+|.+||+||||.+. ..||.+ ||+|.+|+++. ..+...+....-.++...+|.++|+++.+ .+++++++||++|
T Consensus 45 ~D~dG~~ylD~~sg~~~~~lGh~-~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEA 123 (461)
T PRK07482 45 TDAQGRRYIDAFAGLYCVNVGYG-RTEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDA 123 (461)
T ss_pred EECCCCEEEEcccchhhhcCCCC-CHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHH
Confidence 56788999999885 457774 89999987653 33221111111235777899999999874 4678888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc----------CCcEEEEeeC--C--------
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT----------KMVEVFVYKH--C-------- 237 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~----------~g~~v~~~~~--~-------- 237 (334)
+.++++..... +.. +-.+++..+|.....+|+.......++... .+...+.++. +
T Consensus 124 ve~AlKlAr~~----~~~-~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 198 (461)
T PRK07482 124 NETQIKLVWYY----NNV-LGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSE 198 (461)
T ss_pred HHHHHHHHHHH----HHh-cCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCH
Confidence 99999965421 000 001224556777888998765444333100 0111111121 1
Q ss_pred ------CHHHHHHHHhcC-CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-cc
Q 019931 238 ------DMSHLKTLLSCC-TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AE 305 (334)
Q Consensus 238 ------D~~~Le~~l~~~-~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~ 305 (334)
++++|++++.+. +.+...|++|++.+..|.+.| +++|+++|++||++||+||+++. +|++|.++ .+
T Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tG--fGRtG~~~a~~ 276 (461)
T PRK07482 199 EQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTG--FGRLGSMFGSD 276 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccC--CCcCcchhhHH
Confidence 357788888532 346789999999988887755 89999999999999999999984 89999876 47
Q ss_pred ccCCCCCccEEEecCccccc
Q 019931 306 QFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 306 ~~~~~~~~Div~~SlsKa~G 325 (334)
++++.| ||+ +++|++|
T Consensus 277 ~~gv~P--Div--~~gKgl~ 292 (461)
T PRK07482 277 HYGIEP--DLI--TVAKGLT 292 (461)
T ss_pred hcCCCC--CEE--EEccccc
Confidence 889988 455 7999996
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=173.19 Aligned_cols=212 Identities=21% Similarity=0.228 Sum_probs=146.3
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC---CCcEEEeccHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK---KEDCLLCPTGF 175 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g---~e~alv~~sG~ 175 (334)
.++.+|++||||.++ ..||. +||+|.+|+.+. ..+...+.... .++...+|.++|++..+ .+.+++++||+
T Consensus 48 l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~~~~~-~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGs 125 (441)
T PRK05769 48 VEDVDGNVYLDFNAGIAVTNVGH-AHPKVVKAVKEQAEKFLHYSLTDF-YYEPAVELAERLVEIAPGGFEKKVFFTNSGT 125 (441)
T ss_pred EEeCCCCEEEECCCchhhcccCC-CCHHHHHHHHHHHHhccCccCccc-CCHHHHHHHHHHHHhCCCCCCCEEEECCchH
Confidence 457888999999875 34666 489999877553 22221111111 24666889999999875 36788889999
Q ss_pred HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc---------CCcEEEEeeC--------C-
Q 019931 176 AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT---------KMVEVFVYKH--------C- 237 (334)
Q Consensus 176 ~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~---------~g~~v~~~~~--------~- 237 (334)
+||.++++.... .+++..+|.....+|+.....+.++... ....+..++. +
T Consensus 126 EA~e~AlklAr~-----------~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (441)
T PRK05769 126 ESNEAAIKIARY-----------HTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGI 194 (441)
T ss_pred HHHHHHHHHHHH-----------HhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccC
Confidence 999999986443 1345667778888999876665543100 0011222222 1
Q ss_pred -C--------HHHHHH-HHhc--CCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCc
Q 019931 238 -D--------MSHLKT-LLSC--CTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGG 301 (334)
Q Consensus 238 -D--------~~~Le~-~l~~--~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~ 301 (334)
| .+.+|+ ++++ .+.+..+|++|+++++.|.+.| |++|.++|++||+++|+||+|+ | +|++|.
T Consensus 195 ~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~t-G-~gr~G~ 272 (441)
T PRK05769 195 ENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQT-G-MGRTGK 272 (441)
T ss_pred CchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCcccc
Confidence 1 234666 3332 2346789999999999999888 9999999999999999999999 5 889898
Q ss_pred cc-ccccCCCCCccEEEecCcccccC--CccEEee
Q 019931 302 GV-AEQFNCERDVDICVGTLSKAAGC--QGGFIAC 333 (334)
Q Consensus 302 g~-~~~~~~~~~~Div~~SlsKa~G~--~GG~i~~ 333 (334)
++ .+++++.| |++ +|+|++|. ..|++++
T Consensus 273 ~~a~~~~gv~p--Div--t~~K~l~~G~p~gav~~ 303 (441)
T PRK05769 273 MFAIEHFGVEP--DII--TLAKAIAGGLPLGAVIG 303 (441)
T ss_pred eehhhccCCCC--CEE--EEcccccCCcccEEEEE
Confidence 76 46788876 565 79999974 1255554
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=180.30 Aligned_cols=185 Identities=17% Similarity=0.114 Sum_probs=131.3
Q ss_pred CHHHHHHH-----HHhcCCCCccccccCchHHHHHHH----HHHHhHhCCCc-EE-E---eccHHHHHHHHHHHHhhhhh
Q 019931 125 HPTIAKAA-----ARHGMGPRGSALICGYTNYHRLLE----SCLADLKKKED-CL-L---CPTGFAANMAVIVAVGNIAS 190 (334)
Q Consensus 125 ~p~v~~a~-----~~~g~g~~~sr~~~G~~~~~~~LE----~~La~~~g~e~-al-v---~~sG~~An~~ai~al~~~~~ 190 (334)
+|.+++++ .+|+.|.++++...|.... +++| +++++++|++. .+ + ++||++||..++.+++++
T Consensus 47 s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~-~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~-- 123 (452)
T PTZ00094 47 SRAVLECLGSCFTNKYAEGLPGNRYYGGNEVV-DKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQP-- 123 (452)
T ss_pred CHHHHHHhcchhhccccCCCCCccccccchHH-HHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhcCC--
Confidence 45555532 4677788888888886444 6666 48899999753 22 2 268999999999998764
Q ss_pred hccCCCccCCCCCeEEEEcCCCchhhHHHHHH-hhh-----cCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEc
Q 019931 191 LLAGDEKSFKDEKIAIFSDALNHASIIDGIRI-AER-----TKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTD 259 (334)
Q Consensus 191 ~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~l-s~~-----~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e 259 (334)
||.|+++...|++....... ... ....++..|+++ |+++|++++++. ++++|++.
T Consensus 124 ------------gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~--~~~lvi~~ 189 (452)
T PTZ00094 124 ------------HDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAF--RPKLIIAG 189 (452)
T ss_pred ------------CCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHh--CCCEEEEe
Confidence 78999999999885543321 100 001334455554 999999999753 34555542
Q ss_pred CCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc-cCCccEEee
Q 019931 260 SLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQGGFIAC 333 (334)
Q Consensus 260 ~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~-G~~GG~i~~ 333 (334)
.+..|...|+++|.++|+++|+++++|++|++|.++..+.. .++ .++|++++|++|+| |+.||++.+
T Consensus 190 --~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~----~~~-~~~D~l~~S~hK~l~GP~Gg~l~~ 257 (452)
T PTZ00094 190 --ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLP----SPF-PYADVVTTTTHKSLRGPRSGLIFY 257 (452)
T ss_pred --CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCC----CCC-CCCcEEEcCCccCCCCCCceEEEE
Confidence 23467799999999999999999999999999987532211 112 36899999999988 788888875
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.4e-19 Score=174.69 Aligned_cols=202 Identities=14% Similarity=0.161 Sum_probs=140.7
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCC---CcEEEeccHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKK---EDCLLCPTGF 175 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~---e~alv~~sG~ 175 (334)
.+|.+|++||||.+. ..||. +||+|.+|+.+.. ... ........++...+|.++|+++.+. +++++++||+
T Consensus 50 l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~-~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGs 127 (443)
T PRK06058 50 VEDVDGNRLIDLGSGIAVTSVGN-SAPRVVEAVREQVARFT-HTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGA 127 (443)
T ss_pred EEeCCCCEEEEcCcchhhhccCC-CCHHHHHHHHHHHHhcc-CccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcH
Confidence 457889999999874 45777 5899999776542 221 1122223457778999999998752 5688889999
Q ss_pred HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh----cCC-----cEEEE----eeCCCH---
Q 019931 176 AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER----TKM-----VEVFV----YKHCDM--- 239 (334)
Q Consensus 176 ~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~----~~g-----~~v~~----~~~~D~--- 239 (334)
+|+.++++.... .+++..+|..+..+|+.....+.++.. ..+ ..+.. ++.++.
T Consensus 128 eA~e~AlklAr~-----------~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (443)
T PRK06058 128 EAVENAVKIARS-----------YTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGL 196 (443)
T ss_pred HHHHHHHHHHHH-----------hhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCccccccccc
Confidence 999999985432 234566777888899987766654421 000 01111 222221
Q ss_pred ------------HHHHHHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc
Q 019931 240 ------------SHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV 303 (334)
Q Consensus 240 ------------~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~ 303 (334)
+.+++.+. ..+.++|++|++.+..|.+.| |++|+++|++||++||+||+++ | +|++|.++
T Consensus 197 ~~~~~~~~~~~~~~l~~~~~--~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~t-G-fgRtG~~f 272 (443)
T PRK06058 197 ATDGEEAAARAITVIEKQVG--ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQT-G-FARTGAWF 272 (443)
T ss_pred ccchHHHHHHHHHHHHHhhC--CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcChhhh
Confidence 12223222 236789999999998887765 9999999999999999999998 5 78888765
Q ss_pred -ccccCCCCCccEEEecCccccc
Q 019931 304 -AEQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 304 -~~~~~~~~~~Div~~SlsKa~G 325 (334)
.+++++.| ||+ +++|++|
T Consensus 273 a~~~~gv~P--Div--~~gK~l~ 291 (443)
T PRK06058 273 ACEHEGIVP--DLI--TTAKGIA 291 (443)
T ss_pred HHHhcCCCC--CEE--EEccccc
Confidence 46788887 555 7899997
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.3e-19 Score=170.98 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=124.3
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+.+.+||++|+++.|.+.+++++||++|+..++ +++.+ ||.|++....+......+.......|
T Consensus 51 ~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~-~ll~~--------------Gd~Vl~~~~~y~~t~~~~~~~~~~~G 115 (366)
T PRK08247 51 NPTRGVLEQAIADLEGGDQGFACSSGMAAIQLVM-SLFRS--------------GDELIVSSDLYGGTYRLFEEHWKKWN 115 (366)
T ss_pred CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHH-HHhCC--------------CCEEEEecCCcCcHHHHHHHHhhccC
Confidence 4778999999999999999999999999998766 45543 66666665555543332221111238
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
++++.++..|++++++++++ ++++|++++|+||.|.+.++++|.++|+++|+++|+|++|+.+++.. +
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~---~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~---------p 183 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITP---NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQR---------P 183 (366)
T ss_pred ceEEEECCCCHHHHHHhccc---CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccC---------c
Confidence 89999998899999998864 78999999999999999999999999999999999999997665422 1
Q ss_pred CCCCccEEEecCcccccC----CccEEee
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+..++||+++|+||.+++ .||++++
T Consensus 184 ~~~g~di~i~S~sK~~~g~~d~~~G~iv~ 212 (366)
T PRK08247 184 LEEGADIVIHSATKYLGGHNDVLAGLVVA 212 (366)
T ss_pred hhcCCcEEEeecceeccCCCceeeeEEec
Confidence 223578999999999986 4677765
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=171.81 Aligned_cols=204 Identities=12% Similarity=0.119 Sum_probs=143.4
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC---CCcEEEeccHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK---KEDCLLCPTGFA 176 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g---~e~alv~~sG~~ 176 (334)
+|.+|++||||.+. ..||. +||+|.+|+++. ....... .....++...+|.++|+++.+ .+++++++||++
T Consensus 35 ~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~ql~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGse 112 (421)
T PRK09792 35 KDVEGNEYIDFAAGIAVLNTGH-RHPDLVAAVEQQLQQFTHTA-YQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAE 112 (421)
T ss_pred EeCCCCEEEEccCchhhhcCCC-CCHHHHHHHHHHHHhccCcc-cCccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHH
Confidence 46778999999774 45777 499999977543 3222111 111235666889999999864 257888899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh----cC-------CcEEEEeeC--------C
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER----TK-------MVEVFVYKH--------C 237 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~----~~-------g~~v~~~~~--------~ 237 (334)
|+..+++.... .+++..+|.....+|+.....+.++.. .. +...+.++. +
T Consensus 113 A~e~AlklAr~-----------~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~ 181 (421)
T PRK09792 113 AVENAVKIARA-----------HTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQD 181 (421)
T ss_pred HHHHHHHHHHH-----------hcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHH
Confidence 99999996543 234556777888899987666554321 00 111122221 2
Q ss_pred CHHHHHHHHhcC--CCCcEEEEEcCCCCCCCCcc-C---HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCC
Q 019931 238 DMSHLKTLLSCC--TMRKKVVVTDSLFSMDGDFA-P---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCE 310 (334)
Q Consensus 238 D~~~Le~~l~~~--~~~~~lVv~e~v~n~~G~~~-p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~ 310 (334)
+++.+++++++. ..+.++|++|++++++|... | +++|+++|++||++||+||+++. +|++|.+++ +++++.
T Consensus 182 ~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg--~gr~G~~~a~~~~~~~ 259 (421)
T PRK09792 182 SLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSG--FARTGKLFAMDHYADK 259 (421)
T ss_pred HHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--CCCCCchhHHHhcCCC
Confidence 457888888641 24678999999999999654 5 89999999999999999999994 788887654 567766
Q ss_pred CCccEEEecCcccccC
Q 019931 311 RDVDICVGTLSKAAGC 326 (334)
Q Consensus 311 ~~~Div~~SlsKa~G~ 326 (334)
| | +.||||++|.
T Consensus 260 p--D--i~t~gK~l~~ 271 (421)
T PRK09792 260 P--D--LMTMAKSLAG 271 (421)
T ss_pred C--c--EEEeehhhcC
Confidence 6 4 4599999974
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-20 Score=179.46 Aligned_cols=177 Identities=21% Similarity=0.228 Sum_probs=114.2
Q ss_pred HHhcCCCCccccccCchHHHHHHHH----HHHhHhCCC----cEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCC
Q 019931 133 ARHGMGPRGSALICGYTNYHRLLES----CLADLKKKE----DCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEK 203 (334)
Q Consensus 133 ~~~g~g~~~sr~~~G~~~~~~~LE~----~La~~~g~e----~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~g 203 (334)
.+|..|..+.|++.|+ ...+++|+ ++.++|+++ .+-+- .||+.||++++.+|++| |
T Consensus 46 nkyaeg~pg~ryy~G~-~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~p--------------G 110 (399)
T PF00464_consen 46 NKYAEGYPGKRYYGGC-EYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALLKP--------------G 110 (399)
T ss_dssp GS-TTEETTEESSSST-HHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT-T--------------T
T ss_pred eeccccCCCcccccCc-chhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHHhh--------------c
Confidence 4577777777888776 44455544 555689999 88777 79999999999999986 7
Q ss_pred eEEEEcCCCchh-hHHHHHHhh-----hcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEEEE-EcCCCCCCCCccC
Q 019931 204 IAIFSDALNHAS-IIDGIRIAE-----RTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKVVV-TDSLFSMDGDFAP 270 (334)
Q Consensus 204 d~Vl~d~~~H~s-~~~g~~ls~-----~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv-~e~v~n~~G~~~p 270 (334)
|.|+.-.+.|+. +.++..... .....+++.|+.+ |++.+++++++. ++++|+ -.+.|.. ..|
T Consensus 111 D~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~--kPklIi~G~S~y~~---~~d 185 (399)
T PF00464_consen 111 DTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEH--KPKLIICGASSYPR---PID 185 (399)
T ss_dssp -EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH----SEEEEE-SSTSS------
T ss_pred CcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhc--CCCEEEECchhccC---ccC
Confidence 888876654432 112221111 0113456666643 999999999875 456655 4455544 678
Q ss_pred HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc-cCCccEEeeC
Q 019931 271 MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQGGFIACR 334 (334)
Q Consensus 271 L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~-G~~GG~i~~~ 334 (334)
+++++++|++.|++|++|.+|..|++- .|. +.++.+.+||+++|++|+| |+.||+|+++
T Consensus 186 ~~~~reIad~vga~l~~D~sH~~GLIa---~g~--~~~P~~~ADvvt~sThKtl~GPrggiI~~~ 245 (399)
T PF00464_consen 186 FKRFREIADEVGAYLMADISHIAGLIA---GGL--FPNPFPYADVVTGSTHKTLRGPRGGIILTN 245 (399)
T ss_dssp HHHHHHHHHHTT-EEEEE-TTTHHHHH---TTS--S--GCCTSSEEEEESSGGG-SSS-EEEEES
T ss_pred HHHHHHHHHhcCcEEEeccccccccee---hhe--ecCccccceEEEeeccccccccCceEEEEc
Confidence 999999999999999999999999873 233 2344467999999999999 8899999874
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-19 Score=174.27 Aligned_cols=159 Identities=17% Similarity=0.177 Sum_probs=128.5
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+....||++|+++.|.+.+++++||+.|+..++.+++++ ||.|++....|......+.......|
T Consensus 63 ~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~~--------------GD~Vlv~~~~y~~t~~~~~~~~~~~G 128 (431)
T PRK08248 63 NPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASA--------------GDEIVSSSSLYGGTYNLFAHTLPKLG 128 (431)
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCC--------------CCEEEEccCchhhHHHHHHHHHHhCC
Confidence 4667899999999999999999999999999999888764 77777777666554443322112238
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
++++.++..|++++++++++ ++++|+++++.||+|.+.|+++|.++|+++|+++|+|++++.+... .+
T Consensus 129 v~v~~vd~~d~e~l~~ai~~---~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~---------~p 196 (431)
T PRK08248 129 ITVKFVDPSDPENFEAAITD---KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLL---------RP 196 (431)
T ss_pred EEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccC---------Ch
Confidence 89999998899999998864 6899999999999999999999999999999999999998754321 12
Q ss_pred CCCCccEEEecCcccccCC----ccEEee
Q 019931 309 CERDVDICVGTLSKAAGCQ----GGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~~----GG~i~~ 333 (334)
+..++||++.|++|.+|+. ||+|+.
T Consensus 197 l~~gaDivv~S~tK~lgg~g~~~Gg~v~~ 225 (431)
T PRK08248 197 IEHGADIVVHSATKFIGGHGTSIGGVIVD 225 (431)
T ss_pred hHcCCCEEEEcCccccCCCCCceEEEEEe
Confidence 3456899999999999864 566653
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.2e-19 Score=171.92 Aligned_cols=159 Identities=18% Similarity=0.117 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||++++++.|.+++++++||++|+..++.+++++ ||.|++....|......+.......|
T Consensus 64 ~pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~~~--------------GD~Vl~~~~~y~~~~~~~~~~~~~~G 129 (394)
T PRK07050 64 TPTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVKA--------------GDDVLIPDNAYGPNRDHGEWLARDFG 129 (394)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHhCC--------------CCEEEEecCCcccHHHHHHHHHHhcC
Confidence 4667999999999999999999999999999999998764 78888888777765543321112237
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
+++..++..+.+++++++++ ++++|+++++.|+.|.+.|+++|.++|+++|+++++|++|+.+++- .+
T Consensus 130 i~v~~vd~~~~~~l~~~i~~---~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~---------~~ 197 (394)
T PRK07050 130 ITVRFYDPLIGAGIADLIQP---NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAF---------KP 197 (394)
T ss_pred eEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCccccccc---------CH
Confidence 88888887777888888864 7899999999999999999999999999999999999999987541 12
Q ss_pred CCCCccEEEecCcccccC----CccEEee
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+..++||++.|++|.+++ .||++++
T Consensus 198 l~~GaDi~v~S~tK~~~g~~~~~gG~v~~ 226 (394)
T PRK07050 198 FEHGVDISVQALTKYQSGGSDVLMGATIT 226 (394)
T ss_pred HHcCCeEEEEECCceecCCCCeeEEEEEE
Confidence 334579999999999965 3566554
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=169.57 Aligned_cols=159 Identities=25% Similarity=0.209 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.|....||++|+++.|.+.+++|+||+.|+.+++.+++++ ||.|+.....+.....-+.......+
T Consensus 54 nPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~--------------Gd~iv~~~~~Y~~t~~~~~~~l~~~g 119 (386)
T PF01053_consen 54 NPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKP--------------GDHIVASDDLYGGTYRLLEELLPRFG 119 (386)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-T--------------TBEEEEESSSSHHHHHHHHHCHHHTT
T ss_pred cccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhccc--------------CCceEecCCccCcchhhhhhhhcccC
Confidence 5888999999999999999999999999999999998875 55555444434444444442223348
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcC-CEEEEecCcccccccCCCccccccc
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYG-FLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~g-a~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
.++..++..|+++|++++++ ++++|++|++.||...+.|+++|+++|+++| ++++||+..+.+++ ..
T Consensus 120 v~v~~~d~~d~~~l~~~l~~---~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~---------~~ 187 (386)
T PF01053_consen 120 VEVTFVDPTDLEALEAALRP---NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYN---------QN 187 (386)
T ss_dssp SEEEEESTTSHHHHHHHHCT---TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTT---------C-
T ss_pred cEEEEeCchhHHHHHhhccc---cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceee---------ec
Confidence 99999999999999999986 8999999999999999999999999999999 99999999887643 12
Q ss_pred CCCCCccEEEecCcccccC----CccEEee
Q 019931 308 NCERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
++..++||++.|++|.+++ .||+|++
T Consensus 188 pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~ 217 (386)
T PF01053_consen 188 PLELGADIVVHSATKYLSGHSDVMGGAVVV 217 (386)
T ss_dssp GGGGT-SEEEEETTTTTTTSSSE-EEEEEE
T ss_pred cCcCCceEEEeeccccccCCcceeeEEEEE
Confidence 3445689999999999986 3577764
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.3e-19 Score=175.00 Aligned_cols=157 Identities=18% Similarity=0.141 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCc
Q 019931 150 NYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMV 229 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~ 229 (334)
+.+++||++++++.+.+.+++|+||++|+..++ .++++ ||.|++....|......+.......|+
T Consensus 133 pt~~aLE~~lA~leg~e~ai~~~SG~aAi~~il-~ll~~--------------GD~VI~~~~~y~~t~~ll~~~l~~~G~ 197 (464)
T PLN02509 133 PTRDALESLLAKLDKADRAFCFTSGMAALSAVT-HLIKN--------------GEEIVAGDDVYGGSDRLLSQVVPRSGV 197 (464)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHHHHHHHHH-HHhCC--------------CCEEEEcCCchhhHHHHHHHHHHHCCe
Confidence 678999999999999999999999998875544 45553 788888887777654333211112288
Q ss_pred EEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC
Q 019931 230 EVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC 309 (334)
Q Consensus 230 ~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~ 309 (334)
+++.++..|++++++++++ ++++|++++++||+|.+.|+++|+++|++||++||+|++|+.++++. .+
T Consensus 198 ~v~~vd~~d~e~l~~ai~~---~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~---------pl 265 (464)
T PLN02509 198 VVKRVNTTNLDEVAAAIGP---QTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSR---------PL 265 (464)
T ss_pred EEEEeCCCCHHHHHHhCCc---CCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCC---------hh
Confidence 8888998999999988864 78999999999999999999999999999999999999998876532 12
Q ss_pred CCCccEEEecCcccccC----CccEEee
Q 019931 310 ERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 310 ~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
..++||++.|++|.+++ .||++++
T Consensus 266 ~~gaDivv~S~tK~l~G~gdv~gG~v~~ 293 (464)
T PLN02509 266 ELGADIVMHSATKFIAGHSDVMAGVLAV 293 (464)
T ss_pred hcCCcEEEecCcccccCCCccceeEEEe
Confidence 23579999999999976 3677764
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=170.62 Aligned_cols=156 Identities=19% Similarity=0.111 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCch-h---hHHHHHHhh
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHA-S---IIDGIRIAE 224 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~-s---~~~g~~ls~ 224 (334)
.+.+++||++++++.|.+.++++++|++|+..++.+++++ ||.|++....+. + +...++..
T Consensus 44 ~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~al~~~--------------Gd~Vl~~~~~~~~ty~~~~~~~~~~- 108 (376)
T PRK06460 44 NPTVLELTKKIVELENAEMGVAFSSGMGAISTTALALLKP--------------GNSVLVHRDMFGRSYRFFTDYLKNW- 108 (376)
T ss_pred CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCC--------------CCEEEEecCCcCcHHHHHHHHHHhh-
Confidence 5778999999999999999999999999999999888765 677776544332 2 22233333
Q ss_pred hcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccc
Q 019931 225 RTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA 304 (334)
Q Consensus 225 ~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~ 304 (334)
|.++..++.++.+.++++++ +++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.++..
T Consensus 109 ---G~~v~~~~~~~~~~l~~~~~---~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~------- 175 (376)
T PRK06460 109 ---GVNVDASNPGSDNIIEKAKS---KRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQ------- 175 (376)
T ss_pred ---CcEEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCccccC-------
Confidence 78888888877666666543 37899999999999999999999999999999999999999764211
Q ss_pred cccCCCCCccEEEecCcccccC----CccEEeeC
Q 019931 305 EQFNCERDVDICVGTLSKAAGC----QGGFIACR 334 (334)
Q Consensus 305 ~~~~~~~~~Div~~SlsKa~G~----~GG~i~~~ 334 (334)
..+..++||++.|+||+|++ .+|+++++
T Consensus 176 --~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~ 207 (376)
T PRK06460 176 --KPLELGADIVVHSASKFLAGHNDVIAGLAAGY 207 (376)
T ss_pred --ChhhcCCCEEEeecceeccCCCCceEEEEecC
Confidence 11223468999999999975 36888764
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-19 Score=175.35 Aligned_cols=212 Identities=16% Similarity=0.107 Sum_probs=143.1
Q ss_pred hcccceeEEEeecCc---cCCCCCCHHHHHHHHHhcC-CCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGND---YLGLSSHPTIAKAAARHGM-GPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn~---yLgl~~~p~v~~a~~~~g~-g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~A 177 (334)
++.+|++||||+++. +||. +||+|++++.+.-. ...... ..-+++...++.++|+++.+. +.+++++||++|
T Consensus 40 ~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA 117 (427)
T TIGR00508 40 TLDDGRRLIDGMSSWWAAIHGY-NHPRLNAAAQKQIDKMSHVMF-GGFTHKPAIELCQKLVKMTPNALDCVFLADSGSVA 117 (427)
T ss_pred EeCCCCEEEEccchHHHhcCCC-CCHHHHHHHHHHHHhcCCccc-cccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHH
Confidence 456789999999875 8995 68999997765322 111111 011245668899999998753 578888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc-----------CCcEEEEe---------eCC
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT-----------KMVEVFVY---------KHC 237 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~-----------~g~~v~~~---------~~~ 237 (334)
+..+++....... .++ .+++..+|.....+|+.......++... .+.....+ +++
T Consensus 118 ~e~AlklAr~~~~--~~~---~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 192 (427)
T TIGR00508 118 VEVALKMALQYWQ--AKG---EKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEE 192 (427)
T ss_pred HHHHHHHHHHHHH--hhC---CCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHH
Confidence 9999996543200 000 0124567888889998765444433110 00001111 223
Q ss_pred CHHHHHHHHhcCCCCcEEEEEcCCCCCCC-C----ccCHHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCC
Q 019931 238 DMSHLKTLLSCCTMRKKVVVTDSLFSMDG-D----FAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCER 311 (334)
Q Consensus 238 D~~~Le~~l~~~~~~~~lVv~e~v~n~~G-~----~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~ 311 (334)
|++++++++.+...+..+|++|+++.+.| . ..+|++|+++|++||++||+||+| +| +|++|+++ .+++++.|
T Consensus 193 ~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~-tG-~Gr~G~~~~~~~~~v~p 270 (427)
T TIGR00508 193 AITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIA-TG-FGRTGKLFACEHAGVVP 270 (427)
T ss_pred HHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cC-CCcCCccchhhhcCCCC
Confidence 67888888875444678999999866655 3 244999999999999999999999 57 69999885 46788876
Q ss_pred CccEEEecCcccccCCccE
Q 019931 312 DVDICVGTLSKAAGCQGGF 330 (334)
Q Consensus 312 ~~Div~~SlsKa~G~~GG~ 330 (334)
||+ +++|+++ ||+
T Consensus 271 --Di~--~~gK~l~--gG~ 283 (427)
T TIGR00508 271 --DIL--CVGKALT--GGY 283 (427)
T ss_pred --CEE--Eechhhh--cCc
Confidence 566 5899995 454
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=170.45 Aligned_cols=160 Identities=19% Similarity=0.153 Sum_probs=128.1
Q ss_pred chHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC
Q 019931 148 YTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK 227 (334)
Q Consensus 148 ~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~ 227 (334)
..+.+++||+++++++|.+.+++++||++|+..++.+++++ ||.|++....|......+.......
T Consensus 61 ~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~al~al~~~--------------Gd~Vl~~~~~y~~t~~~~~~~~~~~ 126 (389)
T PRK05968 61 DNPTVRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFVEP--------------GDRIVAVRHVYPDAFRLFETILKRM 126 (389)
T ss_pred CChhHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCC--------------CCEEEEeCCCchHHHHHHHHHHHHc
Confidence 35778999999999999999999999999999999887764 7777777666665443332111122
Q ss_pred CcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCccccccc
Q 019931 228 MVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 228 g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
|+++..++..|++++++++. ++++|++|++.|+.+.+.|+++|.++|+++|+++|+|++|+.+++..
T Consensus 127 G~~v~~vd~~d~~~l~~~i~----~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~--------- 193 (389)
T PRK05968 127 GVEVDYVDGRDEEAVAKALP----GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQR--------- 193 (389)
T ss_pred CceEEEeCCCCHHHHHHhcc----cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccC---------
Confidence 88888888889999998872 57899999999999999999999999999999999999998775421
Q ss_pred CCCCCccEEEecCcccccC----CccEEeeC
Q 019931 308 NCERDVDICVGTLSKAAGC----QGGFIACR 334 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~----~GG~i~~~ 334 (334)
++..++|+++.|++|.+++ .||+++++
T Consensus 194 p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~ 224 (389)
T PRK05968 194 PITLGVDLVIHSASKYLGGHSDTVAGVVAGS 224 (389)
T ss_pred chhcCCcEEEeeccccccCCCCeEEEEEEEC
Confidence 1223568999999999986 36888753
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=174.27 Aligned_cols=209 Identities=17% Similarity=0.189 Sum_probs=144.4
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~A 177 (334)
+|.+|++||||.+. ..||. +||+|.+|+.+. ......+.... .++...+|.++|++..+. +++++++||++|
T Consensus 49 ~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~~~~~-~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseA 126 (453)
T PRK06943 49 YDRDGRRYLDAISSWWVNLFGH-ANPRINAALKDQLDTLEHAMLAGC-THEPAIELAERLAALTGGTLGHAFFASDGASA 126 (453)
T ss_pred EeCCCCEEEEcchHHHHhcCCC-CCHHHHHHHHHHHHhcCCcccccc-CCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHH
Confidence 56888999999875 34677 589999977653 22221111111 246668899999998864 478888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc----------CCcEEEEeeC-----------
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT----------KMVEVFVYKH----------- 236 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~----------~g~~v~~~~~----------- 236 (334)
+.++++....... .. -.+++..+|.....+|+.....+.++... .+...+.++.
T Consensus 127 ve~AlKlA~~~~~--~r---g~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 201 (453)
T PRK06943 127 VEIALKMSFHAWR--NR---GRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAA 201 (453)
T ss_pred HHHHHHHHHHHHH--Hh---CCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHH
Confidence 9999997533100 00 01234567778888999876555444210 0111122221
Q ss_pred ----CCHHHHHHHHhcCCCCcEEEEEcC-CCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cc
Q 019931 237 ----CDMSHLKTLLSCCTMRKKVVVTDS-LFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQ 306 (334)
Q Consensus 237 ----~D~~~Le~~l~~~~~~~~lVv~e~-v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~ 306 (334)
++++++++++.+...+...|++|+ +.+..|.+.| |++|+++|++||++||+||+++. +|++|.+++ ++
T Consensus 202 ~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG--~GRtG~~fa~~~ 279 (453)
T PRK06943 202 DVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVG--CGRTGTFFACEQ 279 (453)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhC--CCCCcchhHHHh
Confidence 135778888865445788999999 4888787654 89999999999999999999984 799998775 68
Q ss_pred cCCCCCccEEEecCccccc
Q 019931 307 FNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 307 ~~~~~~~Div~~SlsKa~G 325 (334)
+++.| ||+ +|+|++|
T Consensus 280 ~gv~P--Div--t~gKgl~ 294 (453)
T PRK06943 280 AGVWP--DFL--CLSKGIS 294 (453)
T ss_pred CCCCC--CeE--eeehhhc
Confidence 89887 455 8999997
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=167.79 Aligned_cols=210 Identities=20% Similarity=0.248 Sum_probs=144.5
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHh--CCCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLK--KKEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~--g~e~alv~~sG~~A 177 (334)
++.+|++|+||++. .-||. +||+|.+++++. ..+...+. ....++...+|.++|.+.. +.+++++++||++|
T Consensus 11 ~d~dG~~~lD~~~~~~~~~lGh-~~p~i~~ai~~~~~~~~~~~~-~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseA 88 (339)
T PF00202_consen 11 WDVDGREYLDFMSGYGSVNLGH-NHPEIAEAIAEQANKLNYVSF-SGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEA 88 (339)
T ss_dssp EETTSEEEEESSHHHHTTTT-B-T-HHHHHHHHHHHHHCSSCST-TTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHH
T ss_pred EECCCCEEEECCCCccceecCC-CccccchhHHHHhhhcccccc-cceeccchhhhhhhhhhccccccceeeeccCchHH
Confidence 46788999999774 45676 489999987653 22222211 1223577799999999999 45678888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh--------cCCcEEEEeeCCCHHH--------
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER--------TKMVEVFVYKHCDMSH-------- 241 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~--------~~g~~v~~~~~~D~~~-------- 241 (334)
+..+++....... ....+++..+|.....+|+.....+.++.. .....+..++.++...
T Consensus 89 ve~Alkla~~~~~-----~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 163 (339)
T PF00202_consen 89 VEAALKLARQYHN-----KRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACL 163 (339)
T ss_dssp HHHHHHHHHHHHH-----HTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc-----cccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHH
Confidence 9999997661000 000123566777888999887666554321 0112346677777666
Q ss_pred --HHHHHhcC-CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCc
Q 019931 242 --LKTLLSCC-TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDV 313 (334)
Q Consensus 242 --Le~~l~~~-~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~ 313 (334)
+++++.+. .++...|++|++.+..|...| +++|+++|++||++||+||+++. +|++|..+ .+++++.|
T Consensus 164 ~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG--~gRtG~~~a~~~~gv~P-- 239 (339)
T PF00202_consen 164 NALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTG--FGRTGKFFASEHYGVDP-- 239 (339)
T ss_dssp HHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTT--TTTTSSSSGHHHHTSSS--
T ss_pred HHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceeccccccc--ccccCCccceecccccC--
Confidence 44433322 246789999999998886654 89999999999999999999994 78999876 47889888
Q ss_pred cEEEecCcccccC
Q 019931 314 DICVGTLSKAAGC 326 (334)
Q Consensus 314 Div~~SlsKa~G~ 326 (334)
||+ +++|+++.
T Consensus 240 Div--~~gK~l~g 250 (339)
T PF00202_consen 240 DIV--TFGKGLGG 250 (339)
T ss_dssp SEE--EEEGGGGT
T ss_pred ccc--ccccchhh
Confidence 565 78999964
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-18 Score=171.35 Aligned_cols=198 Identities=19% Similarity=0.141 Sum_probs=144.8
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
+|.+|++||||.++ ..||. +||+|.+|+++. ..+.. ....++...+|.++|++..+.+.+.+++||++|++
T Consensus 70 ~D~DG~~yiD~~~g~g~~~lGh-~~p~i~~Av~~q~~~~~~----~~~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e 144 (453)
T PRK07046 70 TDVDGHRYDDFCLGDTGAMFGH-SPAPVARALAEQARRGLT----TMLPSEDAAWVGEELARRFGLPYWQVATTATDANR 144 (453)
T ss_pred EeCCCCEEEEecccccccccCC-CCHHHHHHHHHHHHhCCC----CCCCCHHHHHHHHHHHHHhCCCEEEEECCHHHHHH
Confidence 57888999999765 34666 589999987653 33322 12235777889999999988888999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHH--hh-----hcC-------CcEEEEeeCCCHHHHHHH
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRI--AE-----RTK-------MVEVFVYKHCDMSHLKTL 245 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~l--s~-----~~~-------g~~v~~~~~~D~~~Le~~ 245 (334)
.+++.... .+++..+|.....+|+..-..+.. .. ... ...+..+++||++.++++
T Consensus 145 ~AlrlAR~-----------~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~ 213 (453)
T PRK07046 145 FVLRWARA-----------VTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFNDLAALEAA 213 (453)
T ss_pred HHHHHHHH-----------hhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCCCHHHHHHH
Confidence 99996433 244566777788899863211111 00 000 113456778999999999
Q ss_pred HhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCc
Q 019931 246 LSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLS 321 (334)
Q Consensus 246 l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sls 321 (334)
+.. .+...|++|++.+..|.+.| |++|+++|++||++||+||+++++ +|.. |..+++++.| ||+ ||+
T Consensus 214 l~~--~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr-~g~G--g~~~~~gv~P--Di~--t~g 284 (453)
T PRK07046 214 LAD--GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTIS-SGPG--GYTRAHGLEP--DFL--VVG 284 (453)
T ss_pred hCC--CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCc-cCCc--chhHHhCCCc--cce--eeh
Confidence 953 46889999999999898877 899999999999999999999843 3432 3456789887 555 799
Q ss_pred ccccC
Q 019931 322 KAAGC 326 (334)
Q Consensus 322 Ka~G~ 326 (334)
|++|.
T Consensus 285 K~lgg 289 (453)
T PRK07046 285 KPIAG 289 (453)
T ss_pred hhhcC
Confidence 99973
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-18 Score=168.89 Aligned_cols=208 Identities=21% Similarity=0.219 Sum_probs=141.9
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC-CCcEEEeccHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK-KEDCLLCPTGFAAN 178 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g-~e~alv~~sG~~An 178 (334)
+|.+|++||||.+. ..||. +||+|.+|+.+. ......+... .++...+|.++|+++.+ .+++++++||++||
T Consensus 35 ~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~~~--~~~~~~~la~~L~~~~~~~~~v~f~~sGseA~ 111 (408)
T PRK04612 35 WDDQGREYLDLAAGIAVCGLGH-NDPDLVAALTEQAGKLWHTSNVF--YSAPPLKLAEELVTASRFAEKVFLCNSGTEAN 111 (408)
T ss_pred EECCCCEEEEcCccHhhccCCC-CCHHHHHHHHHHHHhcccccccc--CCHHHHHHHHHHHhhCCCCCEEEEcCchHHHH
Confidence 56888999999775 34677 499999977543 3222222222 24666789999998774 46788889999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc---C-----CcEEEEeeCCCHHHHHHHHhcCC
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT---K-----MVEVFVYKHCDMSHLKTLLSCCT 250 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~---~-----g~~v~~~~~~D~~~Le~~l~~~~ 250 (334)
..+++....-.. ..+. ..++..+|.....+|+.....+.++... . ...+..++.+|++.++++++.
T Consensus 112 e~AlklAr~~~~--~~g~--~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-- 185 (408)
T PRK04612 112 EAAIKLVRKWAS--SQGR--PADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMAG-- 185 (408)
T ss_pred HHHHHHHHHHHH--hhCC--CCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhCC--
Confidence 999986443100 0000 0012356667888999876665543210 0 112345567899999998853
Q ss_pred CCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCccccc
Q 019931 251 MRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G 325 (334)
.+..+|++|++++..|.+.| +++|+++|++||++||+||+|+ | +|++|..+. .++++.| | +.||||++|
T Consensus 186 ~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g-~gr~G~~~a~~~~~~~p--d--i~t~~K~l~ 259 (408)
T PRK04612 186 GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQC-G-MGRTGTLFAHWQEQVTP--D--IVTLAKALG 259 (408)
T ss_pred CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCCchhhhhhcCCCC--C--EEEEcchhc
Confidence 36789999999887676553 8999999999999999999998 4 788886543 2334433 3 559999998
Q ss_pred C
Q 019931 326 C 326 (334)
Q Consensus 326 ~ 326 (334)
+
T Consensus 260 ~ 260 (408)
T PRK04612 260 G 260 (408)
T ss_pred C
Confidence 3
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=172.78 Aligned_cols=205 Identities=18% Similarity=0.146 Sum_probs=144.1
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCC-----CcEEEe-c
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKK-----EDCLLC-P 172 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~-----e~alv~-~ 172 (334)
.+|.+|++||||.++ ..+|. +||+|.+|+++.- .+...... .-.++...+|.++|++.... +.++++ +
T Consensus 57 l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~~~-~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~ 134 (464)
T PRK06938 57 VEDVEGRQFIDCLAGAGTLALGH-NHPVVIEAIQQVLADELPLHTL-DLTTPVKDQFVQDLFASLPEAFAREAKIQFCGP 134 (464)
T ss_pred EEeCCCCEEEEccCCccccccCC-CCHHHHHHHHHHHHhhhccccc-ccCCHHHHHHHHHHHHhCcccccccceEEEeCC
Confidence 357888999999775 34666 5899999886543 22211111 11257778888999887652 246666 7
Q ss_pred cHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc----------CCcEEEEeeCC-----
Q 019931 173 TGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT----------KMVEVFVYKHC----- 237 (334)
Q Consensus 173 sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~----------~g~~v~~~~~~----- 237 (334)
||++|+.++++.... .+++..+|.....+|+.....+.++... .+...++++.+
T Consensus 135 SGSEAve~AlklAr~-----------~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 203 (464)
T PRK06938 135 TGTDAVEAALKLVKT-----------ATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPF 203 (464)
T ss_pred CcHHHHHHHHHHHHH-----------hhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccc
Confidence 999999999996443 2345677778888999876666554210 01122223322
Q ss_pred ----------CHHHHHHHHhcCC---CCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCC
Q 019931 238 ----------DMSHLKTLLSCCT---MRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNG 300 (334)
Q Consensus 238 ----------D~~~Le~~l~~~~---~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G 300 (334)
+.+.+++++++.. .+...|++|++....|.+.| |++|+++|++||++||+||+++ | +|++|
T Consensus 204 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~t-G-fGRtG 281 (464)
T PRK06938 204 GLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQS-G-FGRTG 281 (464)
T ss_pred cCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCc
Confidence 2567888886432 25789999999988887665 8999999999999999999998 4 79999
Q ss_pred ccc-ccccCCCCCccEEEecCcccccC
Q 019931 301 GGV-AEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 301 ~g~-~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
.++ .+++++.| ||+ +|+|++|.
T Consensus 282 ~~~a~e~~gv~P--Div--~~gKglgg 304 (464)
T PRK06938 282 KMFAFEHAGIIP--DVV--VLSKAIGG 304 (464)
T ss_pred HHHHHHhcCCCC--CEE--EeeccccC
Confidence 876 47899988 455 89999973
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.4e-19 Score=174.64 Aligned_cols=215 Identities=14% Similarity=0.114 Sum_probs=143.2
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh--cCCC-CccccccCchHHHHHHHHHHHh----HhC--CCcEEEe
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH--GMGP-RGSALICGYTNYHRLLESCLAD----LKK--KEDCLLC 171 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~--g~g~-~~sr~~~G~~~~~~~LE~~La~----~~g--~e~alv~ 171 (334)
+|.+|++||||++. ..+|. +||+|.+|+++. .... ..+. . .++...+|.++|++ +.. .++++++
T Consensus 53 ~D~dG~~ylD~~sg~~~~~lGh-~~p~i~~Ai~~q~~~~~l~~~~~--~-~~~~~~~la~~l~~~l~~~~p~~~~~v~f~ 128 (464)
T TIGR00699 53 VDVDGNRLLDLYSQISSIPIGY-NNPALLKAAQSPEMATTLINRPA--L-GNFPSKDWAKILKEGILKVAPKGQDQVWTG 128 (464)
T ss_pred EeCCCCEEEEccCCHhhhcCCC-CCHHHHHHHHHHHHHHhhccccc--C-CcHHHHHHHHHHHHhHHhhCCCCcCEEEEe
Confidence 56888999999884 45676 599999988652 2211 1111 1 23455667777654 443 3678888
Q ss_pred ccHHHHHHHHHHHHhhhhhhccCC--------------CccCCCC--CeEEEEcCCCchhhHHHHHHhhhc----CCc--
Q 019931 172 PTGFAANMAVIVAVGNIASLLAGD--------------EKSFKDE--KIAIFSDALNHASIIDGIRIAERT----KMV-- 229 (334)
Q Consensus 172 ~sG~~An~~ai~al~~~~~~~~~~--------------~~~~~~~--gd~Vl~d~~~H~s~~~g~~ls~~~----~g~-- 229 (334)
+||++||+++++...........+ +...+++ ..+|.....+|+.....+.++... .+.
T Consensus 129 ~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~ 208 (464)
T TIGR00699 129 MSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPA 208 (464)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCC
Confidence 999999999999653210000000 0001222 267778889999887766654211 000
Q ss_pred -EEE--EeeC-----------------CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEE
Q 019931 230 -EVF--VYKH-----------------CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLL 285 (334)
Q Consensus 230 -~v~--~~~~-----------------~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~L 285 (334)
.+. .++. ++++.|++++.+...+..+|++|+++++.|.+.| |++|+++|++||++|
T Consensus 209 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lL 288 (464)
T TIGR00699 209 FDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAF 288 (464)
T ss_pred CCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence 001 1110 2456788888754456889999999999999887 999999999999999
Q ss_pred EEecCcccccccCCCccc-ccccCCCCCccEEEecCcccccC
Q 019931 286 VLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 286 ivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
|+||+|+ | +|++|.++ .+++++....||+ ||+|++|.
T Consensus 289 I~DEV~t-G-fGrtG~~fa~e~~gv~~~PDi~--t~gK~lg~ 326 (464)
T TIGR00699 289 IVDEVQT-G-VGATGKFWAHEHWNLDDPPDMV--TFSKKFQT 326 (464)
T ss_pred EEeeeee-C-CCCCcchhHHHhcCCCCCCCEE--Eehhhhcc
Confidence 9999995 6 69989875 4788987334664 89999964
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=167.29 Aligned_cols=199 Identities=17% Similarity=0.203 Sum_probs=142.7
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNI 188 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~ 188 (334)
.++++|++|... . .+|.+++++.+...+.. ..++.+...+||++++++++.+.++++++|++++..++.+++..
T Consensus 5 ~~~~~~~~~~~~-~-~~~~~~~a~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~~~ 78 (353)
T PLN02721 5 SRVVDLRSDTVT-K-PTDAMRAAMANAEVDDD----VLGYDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHCDV 78 (353)
T ss_pred hhhhhhhccccc-C-CCHHHHHHHHhccCCCc----ccCCCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHccC
Confidence 457799998755 3 57888888865322211 22345667999999999999998999999999998888876641
Q ss_pred hhhccCCCccCCCCCeEEEEcCCCchhhHHH---HHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCC----CCcEEE
Q 019931 189 ASLLAGDEKSFKDEKIAIFSDALNHASIIDG---IRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCT----MRKKVV 256 (334)
Q Consensus 189 ~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g---~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~----~~~~lV 256 (334)
+||.|++..+.|.++... .... |++++.++. .|++++++++++.. +++++|
T Consensus 79 -------------~gd~Vl~~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v 141 (353)
T PLN02721 79 -------------RGSEVILGDNSHIHLYENGGISTLG----GVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLI 141 (353)
T ss_pred -------------CCCeEEEcCccceehhcccchhhhc----CceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEE
Confidence 378889888888776652 2222 777877764 38899999987421 267888
Q ss_pred EEcCCC-CCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC-CccEE
Q 019931 257 VTDSLF-SMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC-QGGFI 331 (334)
Q Consensus 257 v~e~v~-n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~-~GG~i 331 (334)
++++++ |++|.+.| +++|.++|++||++||+|++|.++.....+... .....++|+++.|+||+|++ .|+++
T Consensus 142 ~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~---~~~~~~~d~~~~s~sK~l~~~~G~~~ 218 (353)
T PLN02721 142 CLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPV---HRLVKAADSVSVCLSKGLGAPVGSVI 218 (353)
T ss_pred EEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCH---HHHhhhCCEEEEecccccCCceeeEE
Confidence 887765 56787766 789999999999999999999765321111111 11123578888899999987 45555
Q ss_pred ee
Q 019931 332 AC 333 (334)
Q Consensus 332 ~~ 333 (334)
++
T Consensus 219 ~~ 220 (353)
T PLN02721 219 VG 220 (353)
T ss_pred ec
Confidence 54
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-18 Score=163.85 Aligned_cols=203 Identities=17% Similarity=0.159 Sum_probs=146.8
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAANMAVIV 183 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~An~~ai~ 183 (334)
...++|..|+ ..+..++.+++++.+.. .+...+....|..++.+.+.+.+.+++| .+++++++++++|+..++.
T Consensus 24 ~~~i~l~~g~-~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~ 102 (382)
T PRK06108 24 EGVLPLWFGE-SDLPTPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQ 102 (382)
T ss_pred CCeEEecCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHH
Confidence 4578998886 35767889999876542 2222344445666666777777766666 3567888899999999998
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC--------CHHHHHHHHhcCCCCcEE
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC--------DMSHLKTLLSCCTMRKKV 255 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~--------D~~~Le~~l~~~~~~~~l 255 (334)
+++++ +|.|+++.+.|..+...++.. |++++.++.+ |+++|++.++. ++++
T Consensus 103 ~l~~~--------------gd~vl~~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~~d~~~l~~~~~~---~~~~ 161 (382)
T PRK06108 103 ALVGP--------------GDEVVAVTPLWPNLVAAPKIL----GARVVCVPLDFGGGGWTLDLDRLLAAITP---RTRA 161 (382)
T ss_pred HhcCC--------------CCEEEEeCCCccchHHHHHHC----CCEEEEeeCCCCCCCccCCHHHHHHhcCc---cceE
Confidence 87764 788888888888777666655 7888877652 57788877753 6788
Q ss_pred EEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC--CCccEEEecCcccccCCc--
Q 019931 256 VVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE--RDVDICVGTLSKAAGCQG-- 328 (334)
Q Consensus 256 Vv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~--~~~Div~~SlsKa~G~~G-- 328 (334)
|++++++||+|.+.+ +++|+++|+++|+++|+||+|....+++.+. ......+. .+..|+++||||.||+.|
T Consensus 162 i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R 240 (382)
T PRK06108 162 LFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGR-APSFLDIAEPDDRIIFVNSFSKNWAMTGWR 240 (382)
T ss_pred EEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCC-CCCHhhcCCCcCCEEEEeechhhccCcccc
Confidence 888899999998776 6789999999999999999999876642111 11111121 233588999999998877
Q ss_pred -cEEeeC
Q 019931 329 -GFIACR 334 (334)
Q Consensus 329 -G~i~~~ 334 (334)
||++++
T Consensus 241 iG~~~~~ 247 (382)
T PRK06108 241 LGWLVAP 247 (382)
T ss_pred eeeeeCC
Confidence 888764
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=171.91 Aligned_cols=209 Identities=15% Similarity=0.108 Sum_probs=140.7
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCCC-cEEEeccHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKKE-DCLLCPTGFAAN 178 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e-~alv~~sG~~An 178 (334)
+|.+|++||||.+. ..||. +||+|.+|+.+. ......+. .. .++...+|.++|+++.+.. .+++++||++|+
T Consensus 42 ~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~-~~-~~~~~~~lae~l~~~~~~~~~v~f~~sGseA~ 118 (451)
T PRK07678 42 TDIQGNRYLDGMSGLWCVNVGY-GRKELAEAAYEQLKTLSYFPL-TQ-SHEPAIKLAEKLNEWLGGEYVIFFSNSGSEAN 118 (451)
T ss_pred EeCCCCEEEEccccHHhhcCCC-CCHHHHHHHHHHHHhcCcccc-cc-CCHHHHHHHHHHHHhCCCCCEEEEeCCcHHHH
Confidence 56788999999875 45777 489999977543 33322222 12 2466688999999988654 567779999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc----------CCcEEEEeeC------------
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT----------KMVEVFVYKH------------ 236 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~----------~g~~v~~~~~------------ 236 (334)
+++++....- +.... .+++..+|.....+|+.....+.++... .+...+.++.
T Consensus 119 e~AlklAr~~----t~~~g-~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (451)
T PRK07678 119 ETAFKIARQY----HAQKG-EPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDI 193 (451)
T ss_pred HHHHHHHHHH----HHhcC-CCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHH
Confidence 9999965431 10000 0123566777888999876665443110 0111111110
Q ss_pred CCH---HHHHHHHh-cCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-cccc
Q 019931 237 CDM---SHLKTLLS-CCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQF 307 (334)
Q Consensus 237 ~D~---~~Le~~l~-~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~ 307 (334)
+|. +.++++++ ..+.+...|++|++.+..|.+.| |++|+++|++||++||+||+++. +|++|..+ ++++
T Consensus 194 ~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tG--fGRtG~~~~~~~~ 271 (451)
T PRK07678 194 YDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICG--FGRTGKAFGFMNY 271 (451)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhc--CCcCchhHHHHhc
Confidence 112 23566775 22346889999999998887766 89999999999999999999974 78888654 5778
Q ss_pred CCCCCccEEEecCcccccC
Q 019931 308 NCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~ 326 (334)
++.| ||+ ||+|++|.
T Consensus 272 gv~P--Div--t~gK~lgg 286 (451)
T PRK07678 272 GVKP--DII--TMAKGITS 286 (451)
T ss_pred CCCC--CEE--Eeeccccc
Confidence 9887 455 89999974
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-18 Score=164.62 Aligned_cols=203 Identities=13% Similarity=0.168 Sum_probs=149.6
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC-----CcEEEeccHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK-----EDCLLCPTGFAANMAVI 182 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~-----e~alv~~sG~~An~~ai 182 (334)
..+++|..++ ..+..++.+.+++.+. ..+...+....|...+.+++++.+++++|. +.+++++++++|+..++
T Consensus 29 ~~~i~l~~g~-p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~ 107 (384)
T PRK12414 29 HDALNLSQGA-PNFAPDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAI 107 (384)
T ss_pred CCeEEcCCCC-CCCCCCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHH
Confidence 5678998876 3465688888876542 122233445567778888899988888885 35888899999999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEEE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKVV 256 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lV 256 (334)
.+++.+ ||.|++..+.|......++.. |.+++.++.. |++.|++++++ ++++|
T Consensus 108 ~~l~~~--------------gd~Vlv~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~d~~~l~~~l~~---~~~~v 166 (384)
T PRK12414 108 SALVHP--------------GDEVIYFEPSFDSYAPIVRLQ----GATPVAIKLSPEDFRVNWDEVAAAITP---RTRMI 166 (384)
T ss_pred HHhcCC--------------CCEEEEeCCCccchHHHHHHc----CCEEEEEecCccccccCHHHHHhhcCc---ccEEE
Confidence 888764 788888888887777666665 7777777642 67888887753 68888
Q ss_pred EEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCC-CcccccccCCCCCccEEEecCcccccCCc---c
Q 019931 257 VTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKN-GGGVAEQFNCERDVDICVGTLSKAAGCQG---G 329 (334)
Q Consensus 257 v~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~-G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G 329 (334)
++.+++||+|.+.+ +++|+++|++||+++|+||+|....++.. ...+..+.+. .+..|+++||||+||..| |
T Consensus 167 ~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~-~~~~i~~~SfSK~~~~pGlRiG 245 (384)
T PRK12414 167 IVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHREL-AERSVIVSSFGKSYHVTGWRVG 245 (384)
T ss_pred EEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCc-cCcEEEEecccccccCccceEE
Confidence 88999999998754 78889999999999999999997655321 1122221122 223489999999999877 9
Q ss_pred EEeeC
Q 019931 330 FIACR 334 (334)
Q Consensus 330 ~i~~~ 334 (334)
|++++
T Consensus 246 ~~v~~ 250 (384)
T PRK12414 246 YCLAP 250 (384)
T ss_pred EEecC
Confidence 98764
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-18 Score=170.36 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..+++|++++++.|.+.+++|+||++|+.+++.++.++ ||.|++....|.+....+.......|
T Consensus 68 ~pt~~~le~~la~l~g~~~~v~fsSG~~Ai~~al~~ll~~--------------Gd~VI~~~~~y~~t~~~~~~~l~~~G 133 (437)
T PRK05613 68 NPTVEALENRIASLEGGVHAVAFASGQAAETAAILNLAGA--------------GDHIVTSPRLYGGTETLFLVTLNRLG 133 (437)
T ss_pred ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcCC--------------CCEEEECCCccHHHHHHHHHHHHhcC
Confidence 4778999999999999999999999999999888877654 78888777777766432221112237
Q ss_pred cEEEEee-CCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCccccccc
Q 019931 229 VEVFVYK-HCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 229 ~~v~~~~-~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
+++..++ ..|++++++++++ ++++|+++++.|+.|.+.|+++|.++|+++|+++|+|.+|+.|.. +.
T Consensus 134 i~v~~vd~~~d~e~l~~~l~~---~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~---------~~ 201 (437)
T PRK05613 134 IEVTFVENPDDPESWQAAVQP---NTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAAL---------VR 201 (437)
T ss_pred eEEEEECCCCCHHHHHHhCCc---cCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccc---------cC
Confidence 8888886 5688999988864 688999999999999999999999999999999999999987643 11
Q ss_pred CCCCCccEEEecCcccccCC----ccEEee
Q 019931 308 NCERDVDICVGTLSKAAGCQ----GGFIAC 333 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~~----GG~i~~ 333 (334)
++..++|+++.|++|.+++. ||+++.
T Consensus 202 p~~~GaDivv~S~~K~l~G~gd~~gG~vv~ 231 (437)
T PRK05613 202 PLELGADVVVASLTKFYTGNGSGLGGVLID 231 (437)
T ss_pred hHHhCCCEEEeeccceecCCCcceeEEEEe
Confidence 22346799999999999863 677763
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-18 Score=168.88 Aligned_cols=205 Identities=19% Similarity=0.172 Sum_probs=139.3
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC----CcEEEe-cc
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK----EDCLLC-PT 173 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~----e~alv~-~s 173 (334)
.+|.+|++||||.++ ..||. +||+|.+|+.+. ..+...+... -.++...+|.++|+++.+. ...++| +|
T Consensus 33 l~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~ai~~q~~~~~~~~~~~-~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~s 110 (442)
T TIGR00709 33 VTDVEGKEYLDFLAGAGTLALGH-NHPNMKQKILDYLQSGLPLHTLD-LTTPLKDAFIEALLNIIPKRKMDYKLQFPGPS 110 (442)
T ss_pred EEeCCCCEEEEccccHhhhcCCC-CCHHHHHHHHHHHHhccCccccc-cCcHHHHHHHHHHHHhCCCcCCCccEEEeCCC
Confidence 356788999999875 34677 489999987553 3332222211 1257778899999998753 244555 89
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc---CC-----cEEEEeeCCC-------
Q 019931 174 GFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT---KM-----VEVFVYKHCD------- 238 (334)
Q Consensus 174 G~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~---~g-----~~v~~~~~~D------- 238 (334)
|++||.++++.... .+++..+|.....+|+.....+.++... .+ ..+...+..+
T Consensus 111 GsEA~e~AlklAr~-----------~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (442)
T TIGR00709 111 GADAVEAAIKLAKT-----------YTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFG 179 (442)
T ss_pred HHHHHHHHHHHHHH-----------hcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCcccccccc
Confidence 99999999996443 2345667888889999877666554200 00 1122222211
Q ss_pred ------H----HHHHHHHhc---CCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCc
Q 019931 239 ------M----SHLKTLLSC---CTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGG 301 (334)
Q Consensus 239 ------~----~~Le~~l~~---~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~ 301 (334)
. +.+++.+.. ...+...|++|++.+..|.+.| |++|+++|++||++||+||+++ | +|++|.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~t-G-fGRtG~ 257 (442)
T TIGR00709 180 IGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQA-G-FGRSGT 257 (442)
T ss_pred CCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCCCCc
Confidence 1 223444432 1236789999999998886644 8999999999999999999998 4 788887
Q ss_pred ccc-cccCCCCCccEEEecCcccccC
Q 019931 302 GVA-EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 302 g~~-~~~~~~~~~Div~~SlsKa~G~ 326 (334)
+++ +++++.| ||+ +|+|++|+
T Consensus 258 ~~a~~~~gv~P--Div--~~gK~l~~ 279 (442)
T TIGR00709 258 MFAFEHAGIEP--DFV--VMSKAVGG 279 (442)
T ss_pred hhHHHHcCCCC--cEE--EEcccccC
Confidence 664 6788877 566 59999975
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-18 Score=172.33 Aligned_cols=209 Identities=15% Similarity=0.077 Sum_probs=144.1
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~A 177 (334)
+|.+|++||||.+. ..||. +||+|.+|+.+. ......+.. .-.++...+|.++|+++.. .+.+++++||++|
T Consensus 42 ~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~l~~~~~~-~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEA 119 (466)
T PRK07030 42 EDFEGKRYLDAVSSWWVNVFGH-ANPRINQRIKDQVDQLEHVILA-GFSHEPVIELSERLVKITPPGLSRCFYADNGSSA 119 (466)
T ss_pred EECCCCEEEEcchhHHhhcCCC-CCHHHHHHHHHHHHhcCCcccc-ccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHH
Confidence 46788999999875 34677 489999977543 222222221 1125777889999999874 4678888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC----------CcEEEEeeC-----------
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK----------MVEVFVYKH----------- 236 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~----------g~~v~~~~~----------- 236 (334)
|..+++........ . -.+++..+|.....+|+.....+.++.... +...++++.
T Consensus 120 ve~AlKlAr~~~~~--~---g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~ 194 (466)
T PRK07030 120 IEVALKMSFHYWRN--R---GKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWE 194 (466)
T ss_pred HHHHHHHHHHHHHH--h---CCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHH
Confidence 99999965321000 0 012345677788889998766665542110 011111111
Q ss_pred ----CCHHHHHHHHhcCCCCcEEEEEcC-CCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cc
Q 019931 237 ----CDMSHLKTLLSCCTMRKKVVVTDS-LFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQ 306 (334)
Q Consensus 237 ----~D~~~Le~~l~~~~~~~~lVv~e~-v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~ 306 (334)
++++.+++++.+...+...|++|+ +.+..|.+.| +++|+++|++||++||+||+++. +|++|.+++ ++
T Consensus 195 ~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TG--fGRtG~~~a~~~ 272 (466)
T PRK07030 195 EHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVG--FGRTGTMFACEQ 272 (466)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhC--cCccccchHHHh
Confidence 135667888875445788999999 6877787655 89999999999999999999984 789888764 78
Q ss_pred cCCCCCccEEEecCccccc
Q 019931 307 FNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 307 ~~~~~~~Div~~SlsKa~G 325 (334)
+++.|| |+ +|+|++|
T Consensus 273 ~gv~PD--iv--~~gKgl~ 287 (466)
T PRK07030 273 AGIRPD--FL--CLSKALT 287 (466)
T ss_pred cCCCCC--EE--eeehhcc
Confidence 899874 55 8999996
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-18 Score=167.82 Aligned_cols=203 Identities=14% Similarity=0.161 Sum_probs=140.3
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC---CCcEEEeccHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK---KEDCLLCPTGFA 176 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g---~e~alv~~sG~~ 176 (334)
+|.+|++||||.+. ..||.+ ||+|.+|+++. ....... ......+...+|.++|+++.. .+++++++||++
T Consensus 28 ~D~dG~~ylD~~~g~~~~~lGh~-~p~v~~a~~~ql~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGse 105 (420)
T TIGR00700 28 EDVDGNRLIDFASGIAVLNIGHS-HPRVVDAVRTQVAEFTHTC-FMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAE 105 (420)
T ss_pred EeCCCCEEEECccCHHhccCCCC-CHHHHHHHHHHHHhccCcc-ccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHH
Confidence 56788999999775 346774 89999987543 2222111 111224556789999999874 257888899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh----cCC-----cEEEEeeCC----------
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER----TKM-----VEVFVYKHC---------- 237 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~----~~g-----~~v~~~~~~---------- 237 (334)
|+.++++.... .+++..+|.....+|+.....+.++.. ..+ ..+...+..
T Consensus 106 A~e~AlklAr~-----------~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (420)
T TIGR00700 106 AVENAVKIARS-----------YTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDK 174 (420)
T ss_pred HHHHHHHHHHH-----------hcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccccccccc
Confidence 99999985432 234566777888899987666654321 001 011112111
Q ss_pred ------CHHHHHHHHh--cCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-c
Q 019931 238 ------DMSHLKTLLS--CCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-A 304 (334)
Q Consensus 238 ------D~~~Le~~l~--~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~ 304 (334)
+++.+++++. ..+++..+|++|++.+.+|.+.| +++|+++|++||++||+||+++. +|++|.++ .
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg--~gr~g~~~a~ 252 (420)
T TIGR00700 175 QLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTG--FARTGAMFAC 252 (420)
T ss_pred chhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccC--CcccchhHHH
Confidence 2456777764 22346789999999999998776 89999999999999999999984 67777654 3
Q ss_pred cccCCCCCccEEEecCccccc
Q 019931 305 EQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 305 ~~~~~~~~~Div~~SlsKa~G 325 (334)
+++++.| ||+ ||||+++
T Consensus 253 ~~~~~~p--Di~--~lsK~l~ 269 (420)
T TIGR00700 253 EHEGPEP--DLI--TTAKSLA 269 (420)
T ss_pred hhcCCCC--CEE--Eeecccc
Confidence 5677766 444 7999998
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=172.61 Aligned_cols=209 Identities=15% Similarity=0.113 Sum_probs=144.2
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~A 177 (334)
+|.+|++||||.++ ..||. +||+|.+|+.+. ......+.... .++...+|.++|+++.+. +++++++||++|
T Consensus 51 ~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~l~~~~~~~~-~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA 128 (460)
T PRK06916 51 YDVNGNEYYDGVSSIWLNVHGH-QVPELDEAIREQLNKIAHSTLLGL-ANVPSILLAEKLIEVVPEGLKKVFYSDSGATA 128 (460)
T ss_pred EeCCCCEEEEcchhHHHhhcCC-CCHHHHHHHHHHHHhCCCcccccc-CCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHH
Confidence 56788999999875 34676 589999977543 32222222212 256668999999998753 578888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC----------CcEEEEeeC-----------
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK----------MVEVFVYKH----------- 236 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~----------g~~v~~~~~----------- 236 (334)
|..+++........ .+ .+++..+|.....+|+.....+.++.... +.....++.
T Consensus 129 ve~AlklAr~~~~~--~g---~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~ 203 (460)
T PRK06916 129 VEIAIKMAFQYWQN--KG---KPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKA 203 (460)
T ss_pred HHHHHHHHHHHHHh--cC---CCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChH
Confidence 99999964431000 00 12345677788889998766665542110 111111110
Q ss_pred ----CCHHHHHHHHhcCCCCcEEEEEcC-CCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cc
Q 019931 237 ----CDMSHLKTLLSCCTMRKKVVVTDS-LFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQ 306 (334)
Q Consensus 237 ----~D~~~Le~~l~~~~~~~~lVv~e~-v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~ 306 (334)
.+++.+++++++...+...|++|+ +.+..|.+.| |++|+++|++||++||+||+++ | +|++|.+++ ++
T Consensus 204 ~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~T-G-~GRtG~~~a~~~ 281 (460)
T PRK06916 204 EIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVAT-G-FGRTGKMFACEH 281 (460)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhh-C-CCcCchhhHHHh
Confidence 135667788865445788999999 6888787654 8999999999999999999996 5 799998764 68
Q ss_pred cCCCCCccEEEecCccccc
Q 019931 307 FNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 307 ~~~~~~~Div~~SlsKa~G 325 (334)
+++.|| |+ +|+|++|
T Consensus 282 ~gv~PD--iv--~~gK~l~ 296 (460)
T PRK06916 282 ENVTPD--IM--TAGKGLT 296 (460)
T ss_pred cCCCCC--ee--eeehhhh
Confidence 898874 55 8999996
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-18 Score=167.30 Aligned_cols=158 Identities=15% Similarity=0.113 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+...+||++++++.|.+.+++++||+.|+.+++. ++++ ||.|++....|......+.......+
T Consensus 49 ~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~-~l~p--------------Gd~Vi~~~~~y~~t~~~~~~~~~~~g 113 (380)
T PRK06176 49 NPTRFALEELIADLEGGVKGFAFASGLAGIHAVFS-LFQS--------------GDHVLLGDDVYGGTFRLFDKVLVKNG 113 (380)
T ss_pred ChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHH-HcCC--------------CCEEEEcCCChhHHHHHHHHHHHhcC
Confidence 46679999999999999999999999999886664 5554 67777666555544333321112237
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
.++..++..|++++++++++ ++++|+++++.||+|.+.|+++|.++|+++|+++|+|++++.+.+++ .
T Consensus 114 i~v~~vd~~d~e~l~~ai~~---~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~---------p 181 (380)
T PRK06176 114 LSCTIIDTSDLSQIKKAIKP---NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQN---------P 181 (380)
T ss_pred eEEEEcCCCCHHHHHHhcCc---CceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccCC---------c
Confidence 88888888899999988864 78999999999999999999999999999999999999998764422 1
Q ss_pred CCCCccEEEecCcccccC----CccEEee
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+..++|+++.|++|.+++ .||++++
T Consensus 182 ~~~gaDivv~S~tK~l~g~~d~~gG~vv~ 210 (380)
T PRK06176 182 LLLGADIVVHSGTKYLGGHSDVVAGLVTT 210 (380)
T ss_pred cccCCCEEEecCceeccCCccceeeEEEe
Confidence 234679999999999975 4687765
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-19 Score=165.20 Aligned_cols=209 Identities=18% Similarity=0.149 Sum_probs=155.8
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHH-hcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAAR-HGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAAN 178 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~-~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An 178 (334)
-||..|++|+||-|. -..|. +||.|++++++ +..-.-.||.++ .....++++.+++++|.+.++-+++|.+|+
T Consensus 53 vwD~eGk~ylDflsaysaVnqGh-chpki~~aLqeq~~kLtlssrafY--nd~~~~f~~~vt~lf~~~kvlpmnTGaEa~ 129 (427)
T KOG1402|consen 53 VWDPEGKEYLDFLSAYSAVNQGH-CHPKIIKALQEQADKLTLSSRAFY--NDVLGEFAEYVTKLFGYDKVLPMNTGAEAV 129 (427)
T ss_pred EECCCccchhhhhhhhhhcccCC-CCHHHHHHHHHHHhHhhhhhHHHh--hhhHHHHHHHHHHhcCcceeeecccchhHH
Confidence 478999999999763 23555 59999998865 333344566665 577789999999999999999999999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc-----C----CcEEEEeeCCCHHHHHHHHhcC
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT-----K----MVEVFVYKHCDMSHLKTLLSCC 249 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~-----~----g~~v~~~~~~D~~~Le~~l~~~ 249 (334)
..+++. ++++.... ..+.+++..++.+....|+-+...+.++... . ...+..++.+|.++||..|+.
T Consensus 130 Eta~KL-aR~wgy~~--K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~~- 205 (427)
T KOG1402|consen 130 ETACKL-ARKWGYRK--KNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALKS- 205 (427)
T ss_pred HHHHHH-HHHHHHhh--ccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccCCHHHHHHHhcC-
Confidence 999985 44322110 1111223345556677787666555444210 0 112456678899999999986
Q ss_pred CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccc
Q 019931 250 TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAA 324 (334)
Q Consensus 250 ~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~ 324 (334)
++.+.+++|++....|.+.| |++.++||.+|++++|.||+|+. +|++|+.++ ++..+.|+ |+ -|+|+|
T Consensus 206 -~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTG--l~RTGk~la~d~env~PD--iv--ilgKal 278 (427)
T KOG1402|consen 206 -PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTG--LARTGKLLACDYENVRPD--IV--ILGKAL 278 (427)
T ss_pred -CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhc--ccccCcEEEeehhhcCCC--eE--EEeccc
Confidence 57889999999999998877 99999999999999999999994 899999875 56667674 55 489999
Q ss_pred c
Q 019931 325 G 325 (334)
Q Consensus 325 G 325 (334)
+
T Consensus 279 S 279 (427)
T KOG1402|consen 279 S 279 (427)
T ss_pred c
Confidence 6
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-18 Score=167.96 Aligned_cols=155 Identities=16% Similarity=0.072 Sum_probs=126.0
Q ss_pred chHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC
Q 019931 148 YTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK 227 (334)
Q Consensus 148 ~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~ 227 (334)
..+..+.||++|+.+.+.+.+++++||++|+..++.+++++ ||.|++....+.+....+.......
T Consensus 62 gnPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~--------------GD~Vlv~~~~Y~~~~~l~~~~l~~~ 127 (395)
T PRK05967 62 GTPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSP--------------GDHALIVDSVYYPTRHFCDTMLKRL 127 (395)
T ss_pred CChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCC--------------CCEEEEccCCcHHHHHHHHHHHHhc
Confidence 35888999999999999999999999999999999988875 7777776666666543321111223
Q ss_pred CcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCccccccc
Q 019931 228 MVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 228 g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
|.++..++..+.+.+++++++ +|++|++|++.|+.+.+.|+++|+++|+++|+++++|++++.+++- .
T Consensus 128 Gi~v~~vd~~~~e~l~~al~~---~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~---------~ 195 (395)
T PRK05967 128 GVEVEYYDPEIGAGIAKLMRP---NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYF---------R 195 (395)
T ss_pred CeEEEEeCCCCHHHHHHhcCc---CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCceec---------C
Confidence 788888877777888888864 7999999999999999999999999999999999999999876531 2
Q ss_pred CCCCCccEEEecCcccccCCc
Q 019931 308 NCERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~~G 328 (334)
++..++||++.|++|++++.|
T Consensus 196 pl~~GaDivv~S~tKy~~Gh~ 216 (395)
T PRK05967 196 PLDFGVDISIHAATKYPSGHS 216 (395)
T ss_pred hhHcCCCEEEEecccccCCCC
Confidence 344578999999999998744
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=164.79 Aligned_cols=203 Identities=12% Similarity=0.077 Sum_probs=145.2
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC-CCCccccccCchHHHHHHHHHHHhHhCC----C-cEEEeccHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM-GPRGSALICGYTNYHRLLESCLADLKKK----E-DCLLCPTGFAANMAVI 182 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~-g~~~sr~~~G~~~~~~~LE~~La~~~g~----e-~alv~~sG~~An~~ai 182 (334)
..++||..++ .++..++.+++++.+.-. +...+....|..++.+.+.+.+.+..|. + .+++++++++|+..++
T Consensus 54 ~~~i~l~~G~-P~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~ 132 (413)
T PLN00175 54 HGAINLGQGF-PNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATI 132 (413)
T ss_pred CCeEecCCCC-CCCCCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHH
Confidence 4688998876 466678888887655422 2233334445555555555555554442 3 4667777889999988
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC------CCHHHHHHHHhcCCCCcEEE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH------CDMSHLKTLLSCCTMRKKVV 256 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~------~D~~~Le~~l~~~~~~~~lV 256 (334)
.+++++ ||.|++..+.|......++.. |++++.++. .|++.|++.+.. ++++|
T Consensus 133 ~~l~~~--------------gd~Vlv~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~~~~l~~~~~~---~~k~i 191 (413)
T PLN00175 133 LGLINP--------------GDEVILFAPFYDSYEATLSMA----GAKIKTVTLRPPDFAVPEDELKAAFTS---KTRAI 191 (413)
T ss_pred HHhCCC--------------CCEEEEeCCCchhHHHHHHHc----CCEEEEEECCcccCCCCHHHHHHhcCc---CceEE
Confidence 888764 788888888888777777666 788887764 267888888754 68899
Q ss_pred EEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cE
Q 019931 257 VTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GF 330 (334)
Q Consensus 257 v~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~ 330 (334)
++.+++||+|.+.+ +++|+++|++|++++|+||+|....++.....+....+. .+..|+++||||.||..| ||
T Consensus 192 ~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~-~~~vi~i~SfSK~~~~~G~RiG~ 270 (413)
T PLN00175 192 LINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGM-YERTVTMNSLGKTFSLTGWKIGW 270 (413)
T ss_pred EecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCC-cCcEEEEecchhhccCcchheee
Confidence 99999999999876 777899999999999999999977664322222222222 234589999999999888 99
Q ss_pred EeeC
Q 019931 331 IACR 334 (334)
Q Consensus 331 i~~~ 334 (334)
++++
T Consensus 271 ~v~~ 274 (413)
T PLN00175 271 AIAP 274 (413)
T ss_pred eEeC
Confidence 8874
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=171.09 Aligned_cols=210 Identities=15% Similarity=0.093 Sum_probs=142.9
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCC-------CcEEEe
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKK-------EDCLLC 171 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~-------e~alv~ 171 (334)
.++.+|++||||++. ..||. +||+|.+|+++.. .-...+.... .++...+|.++|+++... ++++++
T Consensus 58 l~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~l~~~~~~~~-~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~ 135 (472)
T PRK08742 58 LVGHDGRRYLDAVSSWWTNLFGH-AEPRIGAAIAAQAGELEQVMLAGF-THEPAVQLAEQLLAIAPRQDGRAPLSKVFYA 135 (472)
T ss_pred EEeCCCCEEEEcCccHHhccCCC-CCHHHHHHHHHHHHhCCCcccccc-CCHHHHHHHHHHHHhCCCcccCCCCCEEEEe
Confidence 457889999999875 34777 4899999875432 1111111111 246678999999998742 578888
Q ss_pred ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC-----C---cEEEEeeCC------
Q 019931 172 PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK-----M---VEVFVYKHC------ 237 (334)
Q Consensus 172 ~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~-----g---~~v~~~~~~------ 237 (334)
+||++||.++++....-.. ..+ .+++..+|.....+|+.....+.++.... . ..+..++..
T Consensus 136 ~sGSEAvE~AlKlAr~~~~--~~g---~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~ 210 (472)
T PRK08742 136 DNGSAGVEVALKMAFHYFH--NRG---EHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAE 210 (472)
T ss_pred CCchHHHHHHHHHHHHHHH--hcC---CCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccc
Confidence 9999999999996543100 000 12345677788889998766655432100 0 011122221
Q ss_pred -----------CHHHHHHHHhcCCCCcEEEEEcC-CCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCc
Q 019931 238 -----------DMSHLKTLLSCCTMRKKVVVTDS-LFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGG 301 (334)
Q Consensus 238 -----------D~~~Le~~l~~~~~~~~lVv~e~-v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~ 301 (334)
+++.+++++.....+...|++|+ +.+..|.+.| |++|+++|++||++||+||+++. +|++|.
T Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TG--fGRtG~ 288 (472)
T PRK08742 211 PGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATG--FGRTGT 288 (472)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhC--CCCCcc
Confidence 24667777764444788999999 5777786554 89999999999999999999984 789998
Q ss_pred cc-ccccCCCCCccEEEecCccccc
Q 019931 302 GV-AEQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 302 g~-~~~~~~~~~~Div~~SlsKa~G 325 (334)
++ .+++++.| ||+ +|+|++|
T Consensus 289 ~~a~e~~gv~P--Div--~~gKgl~ 309 (472)
T PRK08742 289 LFACEQAGVMP--DLL--CLSKGLT 309 (472)
T ss_pred chHHHhcCCCC--CEE--EEccccc
Confidence 77 47889887 455 8999996
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-18 Score=164.82 Aligned_cols=198 Identities=16% Similarity=0.097 Sum_probs=137.7
Q ss_pred ceeEEEeecC-ccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHH
Q 019931 108 FKRLLLFSGN-DYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVA 184 (334)
Q Consensus 108 g~~~l~f~sn-~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~a 184 (334)
+++++||++| +++|. +|.+++++.+.-.....+ +. ....+|+++++++++.+ .+++++++++++..++.+
T Consensus 31 ~~~~i~l~~~~~~~~~--~~~~~~a~~~~~~~~~~y----~~-~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~ 103 (367)
T PRK02731 31 IADIIKLASNENPLGP--SPKAIEAIRAAADELHRY----PD-GSGFELKAALAEKFGVDPERIILGNGSDEILELLARA 103 (367)
T ss_pred CCceEEecCCCCCCCC--CHHHHHHHHHHHHhhcCC----CC-CcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHH
Confidence 4789999998 46664 788888776542211111 11 11368999999999864 344445555566666676
Q ss_pred HhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC----CHHHHHHHHhcCCCCcEEEEEcC
Q 019931 185 VGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC----DMSHLKTLLSCCTMRKKVVVTDS 260 (334)
Q Consensus 185 l~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~----D~~~Le~~l~~~~~~~~lVv~e~ 260 (334)
++++ ||.|+++.+.|.......... |++++.++.+ |++++++++++ ++++|++++
T Consensus 104 l~~~--------------gd~vl~~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~l~~ 162 (367)
T PRK02731 104 YLGP--------------GDEVIYSEHGFAVYPIAAQAV----GAKPVEVPAKDYGHDLDAMLAAVTP---RTRLVFIAN 162 (367)
T ss_pred hcCC--------------CCEEEEecCCHHHHHHHHHHc----CCeEEEecccCCCCCHHHHHHHhCC---CCcEEEEeC
Confidence 6553 788888877776555444443 7888887653 78888888753 678888899
Q ss_pred CCCCCCCccCHHHHHHHHHHc--CCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 261 LFSMDGDFAPMVELVKLRRKY--GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 261 v~n~~G~~~pL~~L~ela~k~--ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
++||+|.+.|+++|.++++.+ |+++|+||+|....++..........+..++ .|+++||||.||..| ||++++
T Consensus 163 p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~g~~G~RiG~l~~~ 240 (367)
T PRK02731 163 PNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPN-VVVTRTFSKAYGLAGLRVGYGIAP 240 (367)
T ss_pred CCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCC-EEEEeeehHhhcCcccceeeeeCC
Confidence 999999999999999999875 8999999999875543211111122222233 488999999998877 898864
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-18 Score=169.73 Aligned_cols=215 Identities=13% Similarity=0.071 Sum_probs=141.3
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFA 176 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~ 176 (334)
.+|.+|++||||.+. ..||. +||+|.+|+.+. ........ ..-.++...+|.++|++..+ .+++++++||++
T Consensus 34 l~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~ai~~q~~~~~~~~~-~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGse 111 (422)
T PRK05630 34 LTLEDGSTVIDAMSSWWSAAHGH-GHPRLKAAAHKQIDTMSHVMF-GGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSV 111 (422)
T ss_pred EEECCCCEEEEcchhHHHhcCCC-CCHHHHHHHHHHHHhCCCccc-CCcCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHH
Confidence 356788999999874 44777 489999977543 22221111 11135667889999999874 467888899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC------C---cEEEEeeCC-----C----
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK------M---VEVFVYKHC-----D---- 238 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~------g---~~v~~~~~~-----D---- 238 (334)
|+.++++....-.. ..+ .+++..+|.....+|+.....+.++.... + ..+..++.. +
T Consensus 112 A~e~AlklAr~~~~--~~g---~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 186 (422)
T PRK05630 112 SVEVAIKMALQYSK--GQG---HPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEI 186 (422)
T ss_pred HHHHHHHHHHHHHH--hcC---CCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHH
Confidence 99999996433100 000 01235677788889987665554432100 0 011111111 1
Q ss_pred ---HHHHHHHHhcCCCCcEEEEEcCC-CCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCC
Q 019931 239 ---MSHLKTLLSCCTMRKKVVVTDSL-FSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNC 309 (334)
Q Consensus 239 ---~~~Le~~l~~~~~~~~lVv~e~v-~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~ 309 (334)
.+.+++++. .+...|++|++ .+..|.+.| +++|+++|++||++||+||+|. | +|++|.+++ +++++
T Consensus 187 ~~~~~~~~~~~~---~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~t-G-~GrtG~~~a~~~~gv 261 (422)
T PRK05630 187 SEYLRSLELLID---ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIAT-G-FGRTGELFATLAAGV 261 (422)
T ss_pred HHHHHHHHHHHh---hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccee-C-CCcCchhhHHHhcCC
Confidence 234455454 26889999996 877776544 8999999999999999999995 6 599998874 67888
Q ss_pred CCCccEEEecCcccccC---CccEEee
Q 019931 310 ERDVDICVGTLSKAAGC---QGGFIAC 333 (334)
Q Consensus 310 ~~~~Div~~SlsKa~G~---~GG~i~~ 333 (334)
.| ||+ ||+|++|. .+|++++
T Consensus 262 ~P--Di~--t~gK~l~gG~~p~~av~~ 284 (422)
T PRK05630 262 TP--DIM--CVGKALTGGFMSFAATLC 284 (422)
T ss_pred CC--Cee--eeechhhcCccccceeec
Confidence 87 455 89999942 3555554
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=162.60 Aligned_cols=173 Identities=20% Similarity=0.199 Sum_probs=138.6
Q ss_pred HHHHhcC---CCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEE
Q 019931 131 AAARHGM---GPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIF 207 (334)
Q Consensus 131 a~~~~g~---g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl 207 (334)
+...|+. |.--+|+. .|..+.||++|+.+.|.-.++.+.||.+|...+|..++++ ||.|+
T Consensus 43 aa~lF~l~~~G~iYsRi~---NPT~~vlE~RiAaLEGG~aa~a~aSG~AA~~~ai~~la~a--------------GD~iV 105 (426)
T COG2873 43 AAALFGLKEPGNIYTRIM---NPTTDVLEERIAALEGGVAALAVASGQAAITYAILNLAGA--------------GDNIV 105 (426)
T ss_pred HHHHhCCCcCCceeeecc---CchHHHHHHHHHHhhcchhhhhhccchHHHHHHHHHhccC--------------CCeeE
Confidence 4444543 33334554 3677889999999999989999999999999999999876 66666
Q ss_pred EcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEE
Q 019931 208 SDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVL 287 (334)
Q Consensus 208 ~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~Liv 287 (334)
+...-++....-+....+..|.++++++.+|++.+++.+++ +||+|++|++-||.+++.|+++|.++|+++|+.|||
T Consensus 106 ss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~---nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliV 182 (426)
T COG2873 106 SSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDE---NTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIV 182 (426)
T ss_pred eeccccCchHHHHHHHHHhcCcEEEEeCCCCHHHHHHHhCc---ccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEE
Confidence 55443344444444444455999999999999999999986 899999999999999999999999999999999999
Q ss_pred ecCcccccccCCCcccccccCCCCCccEEEecCcccccC----CccEEe
Q 019931 288 DDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC----QGGFIA 332 (334)
Q Consensus 288 DeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~----~GG~i~ 332 (334)
|...+.+.+ ..+++.++|||+.|++|.+|+ +||+|+
T Consensus 183 DNT~atpyl---------~rP~~hGADIVvHS~TK~igGhGt~iGG~iV 222 (426)
T COG2873 183 DNTFATPYL---------CRPIEHGADIVVHSATKYIGGHGTAIGGVIV 222 (426)
T ss_pred ecCCCccee---------cchhhcCCCEEEEeecccccCCccccceEEE
Confidence 998887643 124556789999999999987 467775
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-18 Score=165.65 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+...+||++|+++.|.+.+++++||+.|+..++ +++++ ||.|++....|.+....+.......|
T Consensus 49 ~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~-~~l~~--------------Gd~Viv~~~~y~~~~~~~~~~~~~~G 113 (377)
T PRK07671 49 NPTRAALEELIAVLEGGHAGFAFGSGMAAITAVM-MLFSS--------------GDHVILTDDVYGGTYRVMTKVLNRFG 113 (377)
T ss_pred ChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHH-HHhCC--------------CCEEEECCCccchHHHHHHHHHhcCC
Confidence 4777999999999999999999999998877665 45543 77777776666644332221111237
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
++++.++..|++++++++++ ++++|++++++||+|.+.|+++|.++|+++|+++++|++++.+.++. .
T Consensus 114 ~~v~~v~~~d~~~l~~ai~~---~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~---------p 181 (377)
T PRK07671 114 IEHTFVDTSNLEEVEEAIRP---NTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQS---------P 181 (377)
T ss_pred eEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCC---------h
Confidence 88888888899999998864 78999999999999999999999999999999999999998654432 1
Q ss_pred CCCCccEEEecCcccccC----CccEEee
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+..++||++.|++|.+|+ .||++++
T Consensus 182 ~~~g~Divv~S~sK~l~G~~~~~~G~~v~ 210 (377)
T PRK07671 182 ISLGADIVLHSATKYLGGHSDVVAGLVVV 210 (377)
T ss_pred hhhCCeEEEecCcccccCCccceeEEEEe
Confidence 223568999999999985 4676654
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-18 Score=166.96 Aligned_cols=159 Identities=16% Similarity=0.113 Sum_probs=125.2
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||++|+++.|.+.+++++||++|+..++.+++++ ||.|++....|......+.......+
T Consensus 59 ~p~~~~Le~~lA~l~g~~~~v~~~sG~~Ai~~~l~all~p--------------GD~Vvv~~p~Y~~t~~~~~~~~~~~g 124 (405)
T PRK08776 59 NPTRDLLGEALAELEGGAGGVITATGMGAINLVLNALLQP--------------GDTLVVPHDAYGGSWRLFNALAKKGH 124 (405)
T ss_pred ChHHHHHHHHHHHHhCCCceEEEcCHHHHHHHHHHHHhCC--------------CCEEEEccCCchHHHHHHHHHHHhcC
Confidence 4677899999999999999999999999999999888765 77777766666553332222111226
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
.+++.++..|+++|++++++ ++++|++++++||+|.+.|+++|.++|+++|+++|+|++|..+.. +..
T Consensus 125 ~~v~~v~~~d~~~l~~~i~~---~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~---------~~p 192 (405)
T PRK08776 125 FALITADLTDPRSLADALAQ---SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPAL---------QKP 192 (405)
T ss_pred cEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccccc---------CCc
Confidence 77788887899999988864 789999999999999999999999999999999999999986532 112
Q ss_pred CCCCccEEEecCcccccCC----ccEEee
Q 019931 309 CERDVDICVGTLSKAAGCQ----GGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~~----GG~i~~ 333 (334)
+..++||++.|++|.|++. ||++++
T Consensus 193 l~~gaDivv~S~tK~l~g~~~~~~G~vv~ 221 (405)
T PRK08776 193 LEFGADLVLHSTTKYINGHSDVVGGAVVA 221 (405)
T ss_pred ccccCCEEEecCceeecCCCCceEEEEEe
Confidence 2235789999999999753 576654
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.8e-18 Score=168.91 Aligned_cols=211 Identities=14% Similarity=0.090 Sum_probs=142.7
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC---CCcEEEeccHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK---KEDCLLCPTGF 175 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g---~e~alv~~sG~ 175 (334)
.+|.+|++||||.+. ..||. +||+|.+|+++. ..+...+....-.++...+|.++|+++.+ .+++++++||+
T Consensus 36 l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGs 114 (449)
T PRK07481 36 VYDIDGKKLLDGVGGLWNVNVGH-NREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGS 114 (449)
T ss_pred EEeCCCCEEEECchhHHhhcCCC-CCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchH
Confidence 356788999999773 45777 489999987543 33322222212235777899999999873 46788889999
Q ss_pred HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc----------CCcEEEEee------CC--
Q 019931 176 AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT----------KMVEVFVYK------HC-- 237 (334)
Q Consensus 176 ~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~----------~g~~v~~~~------~~-- 237 (334)
+|++++++........ .+ .+++..+|.....+|+.....+.++... .+.....++ .+
T Consensus 115 EAve~AlklAr~~~~~--~g---~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 189 (449)
T PRK07481 115 DSVETALKLARQYWKV--RG---QPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQ 189 (449)
T ss_pred HHHHHHHHHHHHHHHh--cC---CCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCC
Confidence 9999999964431000 00 0134567778888999766555433110 011111111 22
Q ss_pred CHHHH--------HHHHh-cCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-
Q 019931 238 DMSHL--------KTLLS-CCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV- 303 (334)
Q Consensus 238 D~~~L--------e~~l~-~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~- 303 (334)
|.+.+ |+++. ..+.+..+|++|++.+..|.+.| |++|+++|++||++||+||+++ | +|++|.++
T Consensus 190 d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~t-G-fGRtG~~~a 267 (449)
T PRK07481 190 DPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVT-G-FGRTGSWFG 267 (449)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhh-C-cCcCchhhH
Confidence 44443 44443 22346789999999999888765 9999999999999999999998 4 78998876
Q ss_pred ccccCCCCCccEEEecCccccc
Q 019931 304 AEQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 304 ~~~~~~~~~~Div~~SlsKa~G 325 (334)
.+++++.| ||+ +++|++|
T Consensus 268 ~~~~gv~P--Div--~~gKgl~ 285 (449)
T PRK07481 268 SRGWGVKP--DIM--CLAKGIT 285 (449)
T ss_pred hhhcCCCC--CEE--EEeeccc
Confidence 46788887 455 8999996
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-17 Score=161.79 Aligned_cols=204 Identities=16% Similarity=0.129 Sum_probs=139.1
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhcC-C-CCccccccCchHHHHHHHHHHHhHhCC----C-cEEEeccHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHGM-G-PRGSALICGYTNYHRLLESCLADLKKK----E-DCLLCPTGFAANMA 180 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~-g-~~~sr~~~G~~~~~~~LE~~La~~~g~----e-~alv~~sG~~An~~ 180 (334)
|+.+++|.+|+ ..+..++.+++++.+.-. . ...+....|..++.+.+.+.+.+.+|. + .+++++++.+++..
T Consensus 28 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~ 106 (383)
T TIGR03540 28 GVDVISLGIGD-PDLPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAH 106 (383)
T ss_pred CCCeEEeCCCC-CCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHH
Confidence 37889999987 467678888887765322 1 122333344444444444444433343 3 35556777889888
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCCc
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMRK 253 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~~ 253 (334)
++.+++++ ||.|++..+.+......++.. |++++.++.+ |++++++.+.+ ++
T Consensus 107 ~~~~~~~~--------------gd~vlv~~P~y~~~~~~~~~~----G~~v~~v~~~~~~g~~~d~~~l~~~~~~---~~ 165 (383)
T TIGR03540 107 IPLAFVNP--------------GDIVLVPDPGYPVYRIGTLFA----GGEPYEMPLKEENGFLPDFDAIPEDIAK---KA 165 (383)
T ss_pred HHHHhCCC--------------CCEEEEeCCCCcchHHHHHhc----CCEEEEEecCcccCCccCHHHHHhhccc---cc
Confidence 88887764 788888888877766666555 7888877642 56777776643 68
Q ss_pred EEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCC-cccccccCCCCCccEEEecCcccccCCc-
Q 019931 254 KVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNG-GGVAEQFNCERDVDICVGTLSKAAGCQG- 328 (334)
Q Consensus 254 ~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G-~g~~~~~~~~~~~Div~~SlsKa~G~~G- 328 (334)
++|++.+++||+|.+.+ +++|+++|++||++||+||+|....+.... ..+.. +.-..+..|+++||||+||..|
T Consensus 166 ~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~-~~~~~~~~i~~~SfSK~~g~~Gl 244 (383)
T TIGR03540 166 KLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLE-VDGAKDVGIEFHSLSKTYNMTGW 244 (383)
T ss_pred eEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCccc-CCCcccCEEEEEecccccCCccc
Confidence 89888899999999998 678899999999999999999875553211 11111 1111234588999999999888
Q ss_pred --cEEeeC
Q 019931 329 --GFIACR 334 (334)
Q Consensus 329 --G~i~~~ 334 (334)
||++++
T Consensus 245 RiG~~i~~ 252 (383)
T TIGR03540 245 RIGMAVGN 252 (383)
T ss_pred eeeEEeCC
Confidence 898764
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-18 Score=166.43 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=125.7
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||++|+++.|.+.+++++||++|+..++.+++++ ||.|++....|......+.......+
T Consensus 50 ~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~all~~--------------GD~Vl~~~p~y~~~~~~~~~~~~~~~ 115 (382)
T TIGR02080 50 NPTRDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALLGP--------------DDLLVAPHDCYGGTYRLLNALAKKGC 115 (382)
T ss_pred CchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcCC--------------CCEEEEcCCCcHHHHHHHHHHHhhcC
Confidence 3667999999999999999999999999999999988764 78888777777654433322111224
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
.++..++..|++++++++++ ++++|++++++||+|.+.|+++|.++|+++|+++|+|++|..++.. .+
T Consensus 116 ~~v~~~d~~d~~~l~~ai~~---~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~---------~p 183 (382)
T TIGR02080 116 FRVLFVDQGDEQALRAALAQ---KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQ---------NP 183 (382)
T ss_pred eEEEEECCCCHHHHHHhcCc---CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccC---------Cc
Confidence 66766666788999988864 6899999999999999999999999999999999999999876431 12
Q ss_pred CCCCccEEEecCcccccC----CccEEee
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+..++||++.|++|.+++ .+|++++
T Consensus 184 l~~gaDivv~S~sK~l~G~~~~~~G~i~~ 212 (382)
T TIGR02080 184 LALGADLVLHSCTKYLNGHSDVIAGAVIA 212 (382)
T ss_pred hhhCCCEEEeecceeccCCCCceeEEEEe
Confidence 223568999999999975 3677654
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-17 Score=162.43 Aligned_cols=202 Identities=13% Similarity=0.176 Sum_probs=141.7
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhcC--CCCccccccCchHHHHHHHHHHHhHhC----C-CcEEEeccHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHGM--GPRGSALICGYTNYHRLLESCLADLKK----K-EDCLLCPTGFAANMA 180 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~--g~~~sr~~~G~~~~~~~LE~~La~~~g----~-e~alv~~sG~~An~~ 180 (334)
+.+++||+.++ ..+..++.+++++.+.-. ...++. ..|...+.+.+.+.+.+..| . +.+++++++.+|+..
T Consensus 31 ~~~~i~l~~g~-p~~~~~~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~ 108 (399)
T PRK07681 31 GHKMIDLSIGN-PDMPPADFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVH 108 (399)
T ss_pred CCCeEEeCCCC-CCCCCCHHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHH
Confidence 36789999886 456668888887765421 111121 24555555555555544333 2 456777888889888
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCCc
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMRK 253 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~~ 253 (334)
++.+++.+ ||.|+++.+.|......+... |++++.++.+ |++++++.+.. ++
T Consensus 109 ~~~~~~~~--------------Gd~Vlv~~P~y~~~~~~~~~~----G~~~~~v~~~~~~~~~~d~~~l~~~~~~---~~ 167 (399)
T PRK07681 109 LPMVYANP--------------GDIILVPDPGYTAYETGIQMA----GATSYYMPLKKENDFLPDLELIPEEIAD---KA 167 (399)
T ss_pred HHHHhCCC--------------CCEEEECCCCccchHHHHHhc----CCEEEEEecCCCCCCcCCHHHHHHhccc---cc
Confidence 88887764 788888888887777666665 8888888753 56777766643 68
Q ss_pred EEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC--CCCccEEEecCcccccCCc
Q 019931 254 KVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC--ERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 254 ~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~--~~~~Div~~SlsKa~G~~G 328 (334)
++|++.+++||+|.+.+ +++|+++|++||++||+||+|....+... .......+ ..+..|+++||||+||..|
T Consensus 168 k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 245 (399)
T PRK07681 168 KMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGN--KPISFLSVPGAKEVGVEINSLSKSYSLAG 245 (399)
T ss_pred eEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCC--CCCChhhCCCCcccEEEEeecccccCCcc
Confidence 89999999999999988 77788999999999999999997655321 11111111 1234588999999999877
Q ss_pred ---cEEeeC
Q 019931 329 ---GFIACR 334 (334)
Q Consensus 329 ---G~i~~~ 334 (334)
||++++
T Consensus 246 lRiG~~i~~ 254 (399)
T PRK07681 246 SRIGYMIGN 254 (399)
T ss_pred ceeEEEecC
Confidence 998764
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-18 Score=164.88 Aligned_cols=160 Identities=22% Similarity=0.197 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+....||++++++.|.+.++.|+||+.|+.+++.+++++ ||.|+.....++....-+....++.+
T Consensus 62 nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll~~--------------GD~vl~~~~~YG~t~~~~~~~l~~~g 127 (396)
T COG0626 62 NPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKA--------------GDHVLLPDDLYGGTYRLFEKILQKFG 127 (396)
T ss_pred CccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhcCC--------------CCEEEecCCccchHHHHHHHHHHhcC
Confidence 5777999999999999999999999999999999888875 66666554444444333332223358
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
.++..++..|.+.+++.+.+ +++++|++|+|.||+..+.|+++|+++|+++|+++|||+..+.+++ ..+
T Consensus 128 i~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~---------q~P 196 (396)
T COG0626 128 VEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVL---------QRP 196 (396)
T ss_pred eEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccc---------cCh
Confidence 88888888787777777763 3799999999999999999999999999999999999999998865 234
Q ss_pred CCCCccEEEecCcccccC----CccEEee
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+.-++||++.|++|.+|+ .||+|++
T Consensus 197 L~~GaDIVvhSaTKyl~GHsDvl~G~v~~ 225 (396)
T COG0626 197 LELGADIVVHSATKYLGGHSDVLGGVVLT 225 (396)
T ss_pred hhcCCCEEEEeccccccCCcceeeeEEec
Confidence 556799999999999987 4676664
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.4e-18 Score=159.86 Aligned_cols=216 Identities=21% Similarity=0.259 Sum_probs=156.8
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHH-HHhcCCCCccccccCchHHHHHHHHHHHhHh---CCCcEEEeccHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAA-ARHGMGPRGSALICGYTNYHRLLESCLADLK---KKEDCLLCPTGF 175 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~-~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~---g~e~alv~~sG~ 175 (334)
.+|.+|++|+||+|. ..+|.+ +|+|.+++ ++.......+...+ +....++++.|.+.. ..+++.|++||+
T Consensus 50 l~D~~g~EyiD~~ssw~~~~~Gha-npev~ral~~q~~k~~hs~~~~~--t~eav~l~~~l~~~~~~~~~~rvff~nsGT 126 (433)
T KOG1401|consen 50 LFDPDGKEYIDFTSSWAVTILGHA-NPEVARALAEQAKKLGHSSNGYF--TLEAVELEEVLSAVLGKGSAERVFFCNSGT 126 (433)
T ss_pred eecCCcceeeeeccceeccccCCC-CHHHHHHHHHHHhhheeccCccc--cHHHHHHHHHHHhcccCCCccEEEEecCCc
Confidence 467889999999884 567876 89998865 45544433332222 333678999999988 468899999999
Q ss_pred HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhh-hcC-------CcEEEEeeCCCHHHHHHHHh
Q 019931 176 AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE-RTK-------MVEVFVYKHCDMSHLKTLLS 247 (334)
Q Consensus 176 ~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~-~~~-------g~~v~~~~~~D~~~Le~~l~ 247 (334)
+||+.+|+...+.. ...++. ++-.+|.....+|+-....+.... .+. -..++....||+.+|+++++
T Consensus 127 eAne~ALK~Ark~~----~~~~~~-~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~ 201 (433)
T KOG1401|consen 127 EANETALKFARKFT----GKKHPE-KKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFE 201 (433)
T ss_pred HHHHHHHHHHHHhh----cccCCc-cceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHH
Confidence 99999998655431 111111 122477788899988766665431 011 12345566789999999999
Q ss_pred cCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcc
Q 019931 248 CCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSK 322 (334)
Q Consensus 248 ~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsK 322 (334)
.++....+|++|++....|.+++ |..|+++|+++|++||.||+++. +||.|.+.+ +++++.|| | .|++|
T Consensus 202 ~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG--~gR~g~~~a~e~~~~~PD--I--~t~aK 275 (433)
T KOG1401|consen 202 SHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTG--LGRLGYGWAQEYFGVTPD--I--TTVAK 275 (433)
T ss_pred hCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhC--ccccchHHHHHHhCcCCc--c--eeehh
Confidence 87656789999999998786544 77899999999999999999984 788888765 78898885 4 49999
Q ss_pred cccC---CccEEe
Q 019931 323 AAGC---QGGFIA 332 (334)
Q Consensus 323 a~G~---~GG~i~ 332 (334)
.+|. .|++++
T Consensus 276 ~L~gGlPigA~~v 288 (433)
T KOG1401|consen 276 PLGGGLPIGATGV 288 (433)
T ss_pred hccCCceeEEEee
Confidence 9974 455543
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.6e-18 Score=166.90 Aligned_cols=197 Identities=20% Similarity=0.236 Sum_probs=140.4
Q ss_pred eeEEEeecC-ccCCCCCCHHHHHHHH-----HhcCCCCccccccCchHHHHHHHH----HHHhHhCCCcE-EEeccHHHH
Q 019931 109 KRLLLFSGN-DYLGLSSHPTIAKAAA-----RHGMGPRGSALICGYTNYHRLLES----CLADLKKKEDC-LLCPTGFAA 177 (334)
Q Consensus 109 ~~~l~f~sn-~yLgl~~~p~v~~a~~-----~~g~g~~~sr~~~G~~~~~~~LE~----~La~~~g~e~a-lv~~sG~~A 177 (334)
+..+++.+| ++ -+|.|++++. +|+.|.++++...|. +.++++|+ .+++++|.+.+ ++++||++|
T Consensus 25 ~~~~~l~~~~n~----~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt~a 99 (416)
T PRK00011 25 EEHIELIASENF----VSPAVMEAQGSVLTNKYAEGYPGKRYYGGC-EYVDVVEQLAIDRAKELFGAEYANVQPHSGSQA 99 (416)
T ss_pred hcCeeeecccCc----CCHHHHHHHhchhhcccccCCCCccccccc-hHHHHHHHHHHHHHHHHhCCCceeeecCCchHH
Confidence 677887665 55 4899999764 456677777777774 44577777 89999998876 556889999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHH-HHhhhcCCcEEEEeeC------CCHHHHHHHHhcCC
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGI-RIAERTKMVEVFVYKH------CDMSHLKTLLSCCT 250 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~-~ls~~~~g~~v~~~~~------~D~~~Le~~l~~~~ 250 (334)
+..++.+++++ ||.|+++.+.|.+..... .......+++++.++. .|+++|++++++.
T Consensus 100 l~~~l~~l~~~--------------gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~- 164 (416)
T PRK00011 100 NAAVYFALLKP--------------GDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEH- 164 (416)
T ss_pred HHHHHHHhcCC--------------CCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhc-
Confidence 99999888654 788999888887543211 1111111456665543 4899999998642
Q ss_pred CCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc-cCCcc
Q 019931 251 MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQGG 329 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~-G~~GG 329 (334)
++++|++.+ +..|...|+++|.++|++||+++|+|++|..|.++. |.. ...+. .+|++++|++|++ |..||
T Consensus 165 -~~k~v~~~~--~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~---g~~-~~~~~-~~di~~~S~~K~l~g~~gg 236 (416)
T PRK00011 165 -KPKLIIAGA--SAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAA---GVH-PSPVP-HADVVTTTTHKTLRGPRGG 236 (416)
T ss_pred -CCCEEEECC--CcCCCccCHHHHHHHHHHcCCEEEEECcchhccccc---Ccc-CCCCC-CCcEEEecCCcCCCCCCce
Confidence 567777643 234567899999999999999999999999876543 111 11222 5789999999999 56899
Q ss_pred EEee
Q 019931 330 FIAC 333 (334)
Q Consensus 330 ~i~~ 333 (334)
++++
T Consensus 237 ~i~~ 240 (416)
T PRK00011 237 LILT 240 (416)
T ss_pred EEEe
Confidence 9886
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=162.46 Aligned_cols=203 Identities=16% Similarity=0.183 Sum_probs=145.3
Q ss_pred eeEEEeecC-ccCCCC-CCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHh
Q 019931 109 KRLLLFSGN-DYLGLS-SHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 109 ~~~l~f~sn-~yLgl~-~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~ 186 (334)
+.+||-++. -+||.+ .+++++++++++... +.+..+..+++|+++++++|.++++++++|++|+..++.+++
T Consensus 8 ~~~ina~g~~t~~g~s~~~~~v~~a~~~~~~~------~~~~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~ 81 (363)
T TIGR01437 8 KKVINASGKMTILGVSTVSDEVADAQKRGAQN------YFEIKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVI 81 (363)
T ss_pred ceEEECCcEeecCCCCCCCHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHh
Confidence 788996664 467877 578899999887542 234568889999999999999999999999999999999988
Q ss_pred hhhh-hccCCCccCCCCCeEEEEcCCCch----hhHHHHHHhhhcCCcEEEEeeC---CCHHHHHHHHhcCCCCcEEEE-
Q 019931 187 NIAS-LLAGDEKSFKDEKIAIFSDALNHA----SIIDGIRIAERTKMVEVFVYKH---CDMSHLKTLLSCCTMRKKVVV- 257 (334)
Q Consensus 187 ~~~~-~~~~~~~~~~~~gd~Vl~d~~~H~----s~~~g~~ls~~~~g~~v~~~~~---~D~~~Le~~l~~~~~~~~lVv- 257 (334)
.+|+ ++-..-+....+++.|+.....+. +....+.++ |++++.++. .|++++++++++ +|++|+
T Consensus 82 ~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~----g~~~v~v~~~~~~d~~~le~ai~~---~t~ai~~ 154 (363)
T TIGR01437 82 TRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLG----GGKVVEAGYANECSAEQLEAAITE---KTAAILY 154 (363)
T ss_pred cCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhc----CCeEEEEcCCCCCCHHHHHHhcCh---hceEEEE
Confidence 7632 000000011112345666542222 223444555 788877653 489999999875 667554
Q ss_pred EcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc-cCCccEEeeC
Q 019931 258 TDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQGGFIACR 334 (334)
Q Consensus 258 ~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~-G~~GG~i~~~ 334 (334)
+++++|++|.+.|+++|.++|++||+++++|++|+..+ .... ..++|+++.|++|.+ |..+|+++++
T Consensus 155 v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~-----~~~~-----~~g~D~~~~S~~K~l~gp~~G~l~~~ 222 (363)
T TIGR01437 155 IKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL-----QKYY-----RLGADLVIYSGAKAIEGPTSGLVLGK 222 (363)
T ss_pred EecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch-----HHHH-----HcCCCEEEEeCCcccCCCceEEEEEc
Confidence 67778899999999999999999999999999997321 1010 124689999999988 4578888753
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-18 Score=168.48 Aligned_cols=210 Identities=19% Similarity=0.192 Sum_probs=142.4
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFA 176 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~ 176 (334)
.+|.+|++||||.+. ..||. +||+|.+++++.- .....+.... .++...+|.++|+++.. .+++++++||++
T Consensus 24 l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~av~~ql~~~~~~~~~~~-~~~~~~~lae~L~~~~p~~~~~v~f~~sGsE 101 (443)
T PRK07483 24 LIDATGKRYLDASGGAAVSCLGH-SHPRVIAAIHAQIDRLAYAHTSFF-TTEPAEALADRLVAAAPAGLEHVYFVSGGSE 101 (443)
T ss_pred EEeCCCCEEEEcCccHhhhccCC-CCHHHHHHHHHHHHhccCcccccc-CCHHHHHHHHHHHHhCCCCCCEEEEcCCcHH
Confidence 356888999999874 45777 5899999876542 2211111111 25677899999999874 467888899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc-----CC---cEEEEee----CCC------
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT-----KM---VEVFVYK----HCD------ 238 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~-----~g---~~v~~~~----~~D------ 238 (334)
|+.++++....... .. + .+++..+|.....+|+.....+.++... .+ ..+..++ .++
T Consensus 102 Ave~AlklAr~~~~-~~-g---~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 176 (443)
T PRK07483 102 AVEAALKLARQYFV-EI-G---QPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGES 176 (443)
T ss_pred HHHHHHHHHHHHHH-hc-C---CCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCC
Confidence 99999996442100 00 0 0124556777889999877666554210 00 0111111 122
Q ss_pred --------HHHHHHHHhc-CCCCcEEEEEcCCCC-CCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc
Q 019931 239 --------MSHLKTLLSC-CTMRKKVVVTDSLFS-MDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA 304 (334)
Q Consensus 239 --------~~~Le~~l~~-~~~~~~lVv~e~v~n-~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~ 304 (334)
++++++++.. ...+..+|++|++.+ ..|.+.| |++|+++|++||++||+||+++ | +|++|.+++
T Consensus 177 ~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-G-fGRtG~~~a 254 (443)
T PRK07483 177 DEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMC-G-MGRTGTLFA 254 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEeccee-C-cccCcHHHH
Confidence 2567776643 224678999999997 4576655 8999999999999999999998 5 799998774
Q ss_pred -cccCCCCCccEEEecCccccc
Q 019931 305 -EQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 305 -~~~~~~~~~Div~~SlsKa~G 325 (334)
+++++.| ||+ +|+|++|
T Consensus 255 ~~~~gv~P--Div--~~gK~l~ 272 (443)
T PRK07483 255 CEEDGVAP--DLV--TIAKGLG 272 (443)
T ss_pred HhhcCCCC--Cee--eehhhhc
Confidence 6889887 455 8999996
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=162.16 Aligned_cols=198 Identities=14% Similarity=0.173 Sum_probs=142.8
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHh----C----CCcEEEeccHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLK----K----KEDCLLCPTGFAANM 179 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~----g----~e~alv~~sG~~An~ 179 (334)
..++||+.++ ..+..++.+++++++.- .+...+....|. .+|++.+++++ | .+++++++++++|+.
T Consensus 33 ~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~----~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~ 107 (391)
T PRK08361 33 ENVISLGIGE-PDFDTPKNIKEAAKRALDEGWTHYTPNAGI----PELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATY 107 (391)
T ss_pred cCeEEcCCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCc----HHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHH
Confidence 4578998876 45555788888776532 222222223343 45666666654 4 256788888899999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCTMR 252 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~~~ 252 (334)
.++.+++.+ ||.|++..+.|..+...+... |.+++.++. .|++++++.+++ +
T Consensus 108 ~~~~~l~~~--------------g~~Vlv~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~i~~---~ 166 (391)
T PRK08361 108 LAFESLLEE--------------GDEVIIPDPAFVCYVEDAKIA----EAKPIRIPLREENEFQPDPDELLELITK---R 166 (391)
T ss_pred HHHHHhcCC--------------CCEEEEcCCCCcccHHHHHHc----CCEEEEEecCCccCCCCCHHHHHHhccc---c
Confidence 999888764 788888888888887776665 788887764 367888887764 6
Q ss_pred cEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc-
Q 019931 253 KKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG- 328 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G- 328 (334)
+++|++.+++||+|.+.| +++|.++|+++++++|+||+|...++.. ..........++.+|+++||||+||..|
T Consensus 167 ~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~i~~~s~SK~~~~~Gl 244 (391)
T PRK08361 167 TRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEG--AKHYPMIKYAPDNTILANSFSKTFAMTGW 244 (391)
T ss_pred cEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCC--CCCCCHhhcCCCCEEEEecCchhcCCcHh
Confidence 788888899999999999 7889999999999999999998765532 1111111222345789999999999877
Q ss_pred --cEEeeC
Q 019931 329 --GFIACR 334 (334)
Q Consensus 329 --G~i~~~ 334 (334)
||++++
T Consensus 245 RiG~~~~~ 252 (391)
T PRK08361 245 RLGFVIAP 252 (391)
T ss_pred hhhhhccC
Confidence 888764
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-17 Score=160.93 Aligned_cols=205 Identities=14% Similarity=0.113 Sum_probs=144.5
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhc-C-CCCccccccCchHHHHHHHHHHHhHhCC-----CcEEEeccHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHG-M-GPRGSALICGYTNYHRLLESCLADLKKK-----EDCLLCPTGFAANMAV 181 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~-g~~~sr~~~G~~~~~~~LE~~La~~~g~-----e~alv~~sG~~An~~a 181 (334)
++.++|...+.--+..+|.+.+++.+.- . +..++....|..++.+.+.+.+++++|. +++++++++.+++..+
T Consensus 39 ~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~ 118 (405)
T PRK06207 39 GRPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLA 118 (405)
T ss_pred CCceecCCcCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHH
Confidence 6677887654211335677777655432 1 2233444566777777788888877773 5678888889999999
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC----------CCHHHHHHHHhcCCC
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH----------CDMSHLKTLLSCCTM 251 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~----------~D~~~Le~~l~~~~~ 251 (334)
+.+++.+ ||.|++..+.+......+... |++++.++. .|+++|++++++
T Consensus 119 ~~~l~~~--------------Gd~Vlv~~P~y~~~~~~~~~~----g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~--- 177 (405)
T PRK06207 119 VAATVAR--------------GDKVAIVQPDYFANRKLVEFF----EGEMVPVQLDYLSADKRAGLDLDQLEEAFKA--- 177 (405)
T ss_pred HHHhcCC--------------CCEEEEeCCCchhHHHHHHHc----CCEEEEEeccccCcccCCCcCHHHHHHhhhh---
Confidence 9988764 788888888887776666655 777776653 278888888764
Q ss_pred CcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc
Q 019931 252 RKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G 328 (334)
++++|++.+++||+|.+.+ +++|+++|++||++||+||+|...++.....-....+....+.-|+++||||+||..|
T Consensus 178 ~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpG 257 (405)
T PRK06207 178 GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSG 257 (405)
T ss_pred cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcc
Confidence 6788999999999999988 6778899999999999999999765532111011111112233489999999998666
Q ss_pred ---cEEeeC
Q 019931 329 ---GFIACR 334 (334)
Q Consensus 329 ---G~i~~~ 334 (334)
||++++
T Consensus 258 lRiG~ii~~ 266 (405)
T PRK06207 258 YRLGVAFGS 266 (405)
T ss_pred cceEEEEcC
Confidence 888764
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.9e-18 Score=161.91 Aligned_cols=195 Identities=18% Similarity=0.136 Sum_probs=140.3
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHHh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al~ 186 (334)
.++|||+++++ ++..+|.+++++.++...... ++... ..+|++.++++++. +++++++++++++..++.++.
T Consensus 19 ~~~i~l~~~~~-~~~~~~~~~~a~~~~~~~~~~----y~~~~-~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~ 92 (346)
T TIGR01141 19 KEVIKLNSNEN-PFGPPPKAKEALRAEADKLHR----YPDPD-PAELKQALADYYGVDPEQILLGNGSDEIIELLIRAFL 92 (346)
T ss_pred CceEEccCCCC-CCCCCHHHHHHHHHhHHHhhc----CCCCC-HHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhc
Confidence 67999999987 888899999988876422111 12222 27899999999985 346666777788878887776
Q ss_pred hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCC
Q 019931 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSL 261 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v 261 (334)
++ +|.|++..+.+......+... |.+++.++. .|++.+++++. +++++|+++++
T Consensus 93 ~~--------------gd~v~~~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p 151 (346)
T TIGR01141 93 EP--------------GDAVLVPPPTYSMYEISAKIH----GAEVVKVPLDEDGQLDLEDILVAID---DKPKLVFLCSP 151 (346)
T ss_pred CC--------------CCEEEEcCCCHHHHHHHHHHc----CCeEEEeccCCCCCCCHHHHHHhcC---CCCCEEEEeCC
Confidence 53 777888777765544444433 788877764 37788887654 36888988999
Q ss_pred CCCCCCccCHHHHHHHHHHc--CCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 262 FSMDGDFAPMVELVKLRRKY--GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 262 ~n~~G~~~pL~~L~ela~k~--ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
+||+|.+.|++++.++|+.+ ++++|+||+|.. +...+... ......+ .+|+++||||.||+.| ||++++
T Consensus 152 ~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~--~~~~~~~~-~~~~~~~-~~i~~~S~sK~~g~~G~r~G~~~~~ 225 (346)
T TIGR01141 152 NNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGE--FSGEPSTL-PLLAEYP-NLIVLRTLSKAFGLAGLRIGYAIAN 225 (346)
T ss_pred CCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhh--hcCCccHH-HHHhhCC-CEEEEehhhHhhhchhhhceeeecC
Confidence 99999999999999999987 999999999984 22211111 1111122 3588999999998777 888764
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.7e-18 Score=163.64 Aligned_cols=195 Identities=17% Similarity=0.141 Sum_probs=137.9
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHH-hcCCCCccccccCchHHHHHHHHHHHhHhC---CCcEEEeccHHHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAAR-HGMGPRGSALICGYTNYHRLLESCLADLKK---KEDCLLCPTGFAANMAVIVA 184 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~-~g~g~~~sr~~~G~~~~~~~LE~~La~~~g---~e~alv~~sG~~An~~ai~a 184 (334)
..+++++-.+. .+..++.+ +++.+ ...+...+....|. .+|++.++++++ .+++++++++++|+..++.+
T Consensus 26 ~~~~~~~~~e~-~~~~~~~~-~~~~~~~~~~~~~Y~~~~G~----~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~ 99 (373)
T PRK07324 26 SCIDSLTLEEL-LALAGKNP-EAFYQELGQKKLTYGWIEGS----PEFKEAVASLYQNVKPENILQTNGATGANFLVLYA 99 (373)
T ss_pred CCCCCCcHHHH-HhccCcch-HHHHHHHhcCCccCCCCCCC----HHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHH
Confidence 55666666653 44456656 54432 22222223333343 568888888874 35688888899999999998
Q ss_pred HhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCCCCcEEEE
Q 019931 185 VGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCTMRKKVVV 257 (334)
Q Consensus 185 l~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~~~~~lVv 257 (334)
++.+ ||.|++..+.|..+...++.. |++++.++. .|++++++++++ ++++|+
T Consensus 100 l~~~--------------gd~Vl~~~P~y~~~~~~~~~~----g~~v~~v~~~~~~~~~~d~~~l~~~~~~---~~kli~ 158 (373)
T PRK07324 100 LVEP--------------GDHVISVYPTYQQLYDIPESL----GAEVDYWQLKEENGWLPDLDELRRLVRP---NTKLIC 158 (373)
T ss_pred hCCC--------------CCEEEEcCCCchhHHHHHHHc----CCEEEEEecccccCCCCCHHHHHHhCCC---CCcEEE
Confidence 8764 788888888888877666665 788887764 267788777653 788999
Q ss_pred EcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEE
Q 019931 258 TDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFI 331 (334)
Q Consensus 258 ~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i 331 (334)
+++++||+|.+.+ +++|+++|++||+++|+||+|....++ +. ........+ ..|+++||||+||..| ||+
T Consensus 159 i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~--~~-~~s~~~~~~-~~I~~~s~SK~~~~~G~RiG~i 234 (373)
T PRK07324 159 INNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDED--GS-TPSIADLYE-KGISTNSMSKTYSLPGIRVGWI 234 (373)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccC--CC-CCChhhccC-CEEEEecchhhcCCccceeEEE
Confidence 9999999999988 888999999999999999999754333 21 111111222 2488999999999877 898
Q ss_pred eeC
Q 019931 332 ACR 334 (334)
Q Consensus 332 ~~~ 334 (334)
+++
T Consensus 235 ~~~ 237 (373)
T PRK07324 235 AAN 237 (373)
T ss_pred ecC
Confidence 764
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=165.83 Aligned_cols=205 Identities=18% Similarity=0.193 Sum_probs=137.8
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC---CcEEEeccHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK---EDCLLCPTGF 175 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~---e~alv~~sG~ 175 (334)
.+|.+|++||||.+. ..||. +||+|.+|+++. ..+........ .++...+|.++|+++.+. +++++++||+
T Consensus 48 l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~~~~-~~~~~~~la~~L~~~~p~~~~~~v~f~~sGs 125 (451)
T PRK06918 48 VTDVDGNQYIDFAGAIGTINVGH-SHPKVKEALHKQVDQYIHTGFNVM-MYEPYIELAEKLAALAPGSFDKKVLFLNSGA 125 (451)
T ss_pred EEeCCCCEEEEcCCchhhcCCCC-CCHHHHHHHHHHHHhccCcccccc-ccHHHHHHHHHHHHhCCCCCCCEEEEcCCcH
Confidence 357888999999775 34676 599999987543 33221111111 256778999999999863 5788889999
Q ss_pred HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC------C---cEEEEeeCCC--------
Q 019931 176 AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK------M---VEVFVYKHCD-------- 238 (334)
Q Consensus 176 ~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~------g---~~v~~~~~~D-------- 238 (334)
+|++++++.... .+++..+|.....+|+.....+.++.... + ..+...+..+
T Consensus 126 eA~e~AlklAr~-----------~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (451)
T PRK06918 126 EAVENAVKIARK-----------YTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGL 194 (451)
T ss_pred HHHHHHHHHHHH-----------HhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccC
Confidence 999999996433 23456777788889998766655432100 0 0111111110
Q ss_pred ---------HHHHHHHHhc--CCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc
Q 019931 239 ---------MSHLKTLLSC--CTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV 303 (334)
Q Consensus 239 ---------~~~Le~~l~~--~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~ 303 (334)
.+.+++++.. ...+..+|++|++.+..|.+.| +++|+++|++||++||+||+++. +|++|..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg--~gr~g~~~ 272 (451)
T PRK06918 195 TEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTG--FARTGKYF 272 (451)
T ss_pred chHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--cCccCcee
Confidence 1234554431 1236789999999988887554 88999999999999999999984 56777544
Q ss_pred -ccccCCCCCccEEEecCcccccC
Q 019931 304 -AEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 304 -~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
.+++++.| | +.||||+++.
T Consensus 273 a~~~~~v~p--D--i~t~sK~l~~ 292 (451)
T PRK06918 273 AIEHFDVVP--D--LITVSKSLGA 292 (451)
T ss_pred hhHhcCCCC--C--EEeeehhhcC
Confidence 35667666 4 4489999983
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-18 Score=170.21 Aligned_cols=220 Identities=14% Similarity=0.094 Sum_probs=145.0
Q ss_pred hcc-cceeEEEeecC---ccCCCCCCHHHHH--HHHHhcCC-C--CccccccCchHHHHHHHHHHHhHh---CCCcEEEe
Q 019931 104 FAR-QFKRLLLFSGN---DYLGLSSHPTIAK--AAARHGMG-P--RGSALICGYTNYHRLLESCLADLK---KKEDCLLC 171 (334)
Q Consensus 104 ~~~-~g~~~l~f~sn---~yLgl~~~p~v~~--a~~~~g~g-~--~~sr~~~G~~~~~~~LE~~La~~~---g~e~alv~ 171 (334)
+|. +|++||||.+. ..||. +||+|.+ ++++.-.- . ..+. ..-.++...+|.++|+++. +.++++++
T Consensus 39 ~D~~dG~~ylD~~~g~~~~~lGh-~~p~v~~~~ai~~ql~~l~~~~~~~-~~~~~~~~~~la~~l~~~~~p~~~~~v~f~ 116 (443)
T PRK08297 39 VDARTGRRYLDMFTFFASSALGM-NHPALADDPEFRAELGRAALNKPSN-SDVYTVEMARFVDTFARVLGDPELPHLFFV 116 (443)
T ss_pred EECCCCCEeeecccCHhhhcCCC-CChHHhhHHHHHHHHHHhhhhcccc-CCcCCHHHHHHHHHHHhhcCCCCCCEEEEe
Confidence 563 78999999775 45777 5888888 77543210 0 0111 1112466678889999886 24678888
Q ss_pred ccHHHHHHHHHHHHhhhhh-h-ccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC---C-cE------E----EEee
Q 019931 172 PTGFAANMAVIVAVGNIAS-L-LAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK---M-VE------V----FVYK 235 (334)
Q Consensus 172 ~sG~~An~~ai~al~~~~~-~-~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~---g-~~------v----~~~~ 235 (334)
+||++||+++++....... . ...+ .+.+++..+|.....+|+.....+.++.... . .. + ..++
T Consensus 117 ~SGsEAve~AlKlAr~~~~~~~~~~g-~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (443)
T PRK08297 117 DGGALAVENALKVAFDWKSRKNEARG-IDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFP 195 (443)
T ss_pred CchHHHHHHHHHHHHHHhhccccccC-CCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCC
Confidence 9999999999996532100 0 0000 0001234567788889998766665542100 0 00 0 0111
Q ss_pred C-------------CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccC
Q 019931 236 H-------------CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGK 298 (334)
Q Consensus 236 ~-------------~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~ 298 (334)
. ++++++++++.+...+...|++|++.++.|.+.| |++|+++|++||++||+||+++ | +|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t-G-fGR 273 (443)
T PRK08297 196 LPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQT-G-VGL 273 (443)
T ss_pred CcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-c-cCc
Confidence 0 1345566777654457899999999999998754 8999999999999999999998 4 789
Q ss_pred CCccc-ccccCCCCCccEEEecCcccccCCccEEee
Q 019931 299 NGGGV-AEQFNCERDVDICVGTLSKAAGCQGGFIAC 333 (334)
Q Consensus 299 ~G~g~-~~~~~~~~~~Div~~SlsKa~G~~GG~i~~ 333 (334)
+|.++ .+++++.| ||+ +|+|+++ .||++++
T Consensus 274 tG~~~a~~~~gv~P--Div--~~gK~l~-~~a~l~~ 304 (443)
T PRK08297 274 TGTAWAYQQLGVRP--DIV--AFGKKTQ-VCGIMAG 304 (443)
T ss_pred cchHHHHHhcCCCC--CEE--Eeccccc-ccceecc
Confidence 98876 46788877 566 7999996 4666654
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-17 Score=161.35 Aligned_cols=208 Identities=12% Similarity=0.034 Sum_probs=141.7
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhcC-C-CCccccccCchHHHHHHHHHHHhHhCC----C-cEEEeccHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHGM-G-PRGSALICGYTNYHRLLESCLADLKKK----E-DCLLCPTGFAANMA 180 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~-g-~~~sr~~~G~~~~~~~LE~~La~~~g~----e-~alv~~sG~~An~~ 180 (334)
|+.+++|..++ ..+..++.+++++.+.-. . ...+....|..++.+.+.+.+.+.+|. + .+++++++++++..
T Consensus 29 ~~~~i~l~~~~-p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~ 107 (405)
T PRK09148 29 GADIIDLGMGN-PDLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFAN 107 (405)
T ss_pred CCCeEEcCCCC-CCCCCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHH
Confidence 47889998875 345557888887655321 1 122333345444444444444433342 4 57777888999999
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC----CHHHHHHHHhcCCCCcEEE
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC----DMSHLKTLLSCCTMRKKVV 256 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~----D~~~Le~~l~~~~~~~~lV 256 (334)
++.+++.+ ||.|++..+.+......+... |++++.++.. ++++++++++...+++++|
T Consensus 108 ~~~~l~~~--------------gd~Vl~~~P~y~~~~~~~~~~----g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v 169 (405)
T PRK09148 108 MAQAITAP--------------GDVILCPNPSYPIHAFGFIMA----GGVIRSVPAEPDEEFFPALERAVRHSIPKPIAL 169 (405)
T ss_pred HHHHhcCC--------------CCEEEEcCCCCcccHHHHHhc----CCEEEEEeCCCCCCCccCHHHHHhhccccceEE
Confidence 99888764 788888888877766665555 7888887642 4567777776544578899
Q ss_pred EEcCCCCCCCCccCH---HHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cE
Q 019931 257 VTDSLFSMDGDFAPM---VELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GF 330 (334)
Q Consensus 257 v~e~v~n~~G~~~pL---~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~ 330 (334)
++++|+||+|.+.+. ++|.++|++||+++|+||+|....++.........+....+..|+++||||+||..| ||
T Consensus 170 ~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~ 249 (405)
T PRK09148 170 IVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGF 249 (405)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheee
Confidence 999999999999885 678899999999999999998755532111111111111234477999999999877 99
Q ss_pred EeeC
Q 019931 331 IACR 334 (334)
Q Consensus 331 i~~~ 334 (334)
++++
T Consensus 250 ~v~~ 253 (405)
T PRK09148 250 AVGN 253 (405)
T ss_pred eeCC
Confidence 8864
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-17 Score=161.79 Aligned_cols=203 Identities=12% Similarity=0.082 Sum_probs=140.6
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhc-CC-CCccccccCchHHHHHHHHHHHhHhCC-----C-cEEEeccHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHG-MG-PRGSALICGYTNYHRLLESCLADLKKK-----E-DCLLCPTGFAANM 179 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g-~~~sr~~~G~~~~~~~LE~~La~~~g~-----e-~alv~~sG~~An~ 179 (334)
|++++||++++ ..+..+|.+++++.+.. .. ...+. ..|...+.+.+.+.+.+.+|. + .+++++++.+++.
T Consensus 43 ~~~~i~L~~g~-p~~~~~~~~~~~l~~~~~~~~~~~Y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~ 120 (410)
T PRK06290 43 DMELIDMGVGE-PDEMADESVVEVLCEEAKKPENRGYA-DNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALA 120 (410)
T ss_pred CCCeEEcCCCC-CCCCCCHHHHHHHHHHHhCCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHH
Confidence 47789999987 46667888888765432 11 12222 245544444444444443342 3 3566666678888
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMR 252 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~ 252 (334)
.++.+++.+ ||.|++..+.+......++.. |++++.++.. |++++++.+.+ +
T Consensus 121 ~~~~~~~~~--------------gd~Vlv~~P~y~~~~~~~~~~----g~~v~~v~~~~~~~~~~d~~~l~~~~~~---~ 179 (410)
T PRK06290 121 MLPSCFINP--------------GDVTLMTVPGYPVTGTHTKYY----GGEVYNLPLLEENNFLPDLDSIPKDIKE---K 179 (410)
T ss_pred HHHHHhCCC--------------CCEEEEeCCCCccHHHHHHHc----CCEEEEEecCCCcCCcCCHHHHHHhhcc---c
Confidence 888887764 788888888877766666655 7888887742 67777777653 6
Q ss_pred cEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc-
Q 019931 253 KKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG- 328 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G- 328 (334)
+++|++++|+||+|.+.+ +++|.++|++||++||+||+|....++.....+....+ ..+.+|+++||||++|+.|
T Consensus 180 ~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~-~~~~~I~i~SfSK~~g~~Gl 258 (410)
T PRK06290 180 AKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPG-AKEVGVEIHSLSKAYNMTGW 258 (410)
T ss_pred ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCC-ccccEEEEeechhhcCCchh
Confidence 889998899999999998 57788899999999999999997655422222222111 2345799999999999888
Q ss_pred --cEEeeC
Q 019931 329 --GFIACR 334 (334)
Q Consensus 329 --G~i~~~ 334 (334)
||++++
T Consensus 259 RiG~ii~~ 266 (410)
T PRK06290 259 RLAFVVGN 266 (410)
T ss_pred heEeEEeC
Confidence 998864
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-17 Score=159.88 Aligned_cols=200 Identities=15% Similarity=0.113 Sum_probs=142.6
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC-CCCccccccCchHHHHHHHHHHHhHh----CC----CcEEEeccHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM-GPRGSALICGYTNYHRLLESCLADLK----KK----EDCLLCPTGFAANM 179 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~-g~~~sr~~~G~~~~~~~LE~~La~~~----g~----e~alv~~sG~~An~ 179 (334)
.+++||..++ ..+..+|.+++++.+.-. +...+....| ..+|++.|++++ |. +++++++++++|+.
T Consensus 31 ~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g----~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~ 105 (393)
T PRK05764 31 RDVISLGAGE-PDFDTPEHIKEAAIEALDDGKTKYTPAAG----IPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALY 105 (393)
T ss_pred CCEEEeCCCC-CCCCCCHHHHHHHHHHHhcCCCCcCCCCC----hHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHH
Confidence 6788999887 467778988887765422 2111222233 355666666665 32 45777888889999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMR 252 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~ 252 (334)
.++.+++++ +|.|++..+.|..+...++.. |.+++.++.+ |++.+++++++ +
T Consensus 106 ~~~~~~~~~--------------gd~vl~~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~l~~---~ 164 (393)
T PRK05764 106 NAFMALLDP--------------GDEVIIPAPYWVSYPEMVKLA----GGVPVFVPTGEENGFKLTVEQLEAAITP---K 164 (393)
T ss_pred HHHHHhcCC--------------CCEEEecCCCCcchHHHHHHc----CCEEEEEecCcccCCcCCHHHHHHhhCc---c
Confidence 988887764 788888888888877777666 7888888763 56888888753 6
Q ss_pred cEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCC-CcccccccCCCCCccEEEecCcccccCCc
Q 019931 253 KKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKN-GGGVAEQFNCERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~-G~g~~~~~~~~~~~Div~~SlsKa~G~~G 328 (334)
+++|++.+++||+|.+.+ +++|.++|++||+++|+||+|+...++.. .........-..+.+|+++||||.+|..|
T Consensus 165 ~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G 244 (393)
T PRK05764 165 TKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTG 244 (393)
T ss_pred ceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCcc
Confidence 788888899999999876 77899999999999999999987655321 11222110111235799999999999777
Q ss_pred ---cEEeeC
Q 019931 329 ---GFIACR 334 (334)
Q Consensus 329 ---G~i~~~ 334 (334)
||++++
T Consensus 245 ~RiG~i~~~ 253 (393)
T PRK05764 245 WRLGYAAGP 253 (393)
T ss_pred ceeEEEecC
Confidence 888764
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=164.14 Aligned_cols=159 Identities=14% Similarity=0.112 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||++||++.|.+.+++++||++|+..++.+++++ ||.|++....|......+.......+
T Consensus 51 ~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~~~--------------GD~Vl~~~~~y~~~~~~~~~~~~~~g 116 (386)
T PRK08045 51 NPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKP--------------GDLLVAPHDCYGGSYRLFDSLAKRGC 116 (386)
T ss_pred CccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCC--------------CCEEEEcCCCcHHHHHHHHHHHhhCC
Confidence 3667899999999999989999999999999999888765 77788777777654433221111124
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
.++..++..|++++++++++ ++++|++++++||+|.+.|+++|.++|+++|+++|+|++|..+... ..
T Consensus 117 i~v~~vd~~d~e~l~~~l~~---~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~---------~p 184 (386)
T PRK08045 117 YRVLFVDQGDEQALRAALAE---KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQ---------NP 184 (386)
T ss_pred eEEEEeCCCCHHHHHHhccc---CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccC---------Cc
Confidence 56666766788999988864 7899999999999999999999999999999999999999876431 12
Q ss_pred CCCCccEEEecCcccccC----CccEEee
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+..++|+++.|++|.+++ .||++++
T Consensus 185 l~~gaDivv~S~tK~l~G~~d~~~G~vi~ 213 (386)
T PRK08045 185 LALGADLVLHSCTKYLNGHSDVVAGVVIA 213 (386)
T ss_pred hhhCCCEEEeecceeccCCCCceeEEEEe
Confidence 234578999999999975 3466654
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=164.39 Aligned_cols=158 Identities=13% Similarity=0.086 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||++++++.|.+.+++++||+.|+..++. ++++ ||.|++....|.+....+.......|
T Consensus 53 ~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l~~--------------Gd~Vlv~~~~y~~~~~~~~~~~~~~G 117 (390)
T PRK08064 53 NPTREALEDIIAELEGGTKGFAFASGMAAISTAFL-LLSK--------------GDHVLISEDVYGGTYRMITEVLSRFG 117 (390)
T ss_pred ChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-HhCC--------------CCEEEEccCccchHHHHHHHHHHHcC
Confidence 47779999999999999999999999999887775 4543 67777766666654433221111238
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
++++.++..|++++++.+++ ++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+.... .
T Consensus 118 ~~v~~v~~~d~~~l~~~l~~---~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~---------~ 185 (390)
T PRK08064 118 IEHTFVDMTNLEEVAQNIKP---NTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQK---------P 185 (390)
T ss_pred CEEEEECCCCHHHHHHhcCC---CceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccC---------c
Confidence 88888888899999888864 78999999999999999999999999999999999999998653211 1
Q ss_pred CCCCccEEEecCcccccC----CccEEee
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+..++||++.|++|.+++ .+|++++
T Consensus 186 ~~~g~Divv~S~tK~~~G~~~~laG~~v~ 214 (390)
T PRK08064 186 LDLGADVVLHSATKFLAGHSDVLAGLAVV 214 (390)
T ss_pred hhhCCcEEEeecceeccCCccceeEEEEe
Confidence 223579999999999975 3466543
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-18 Score=161.24 Aligned_cols=159 Identities=21% Similarity=0.169 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHhHhCCCcEEE-eccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC
Q 019931 149 TNYHRLLESCLADLKKKEDCLL-CPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK 227 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv-~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~ 227 (334)
...+.++|+++|+++|.+++++ +++++.+|..++.+++++ ||.|+++++.|.++..++.+.
T Consensus 58 ~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~~--------------gd~Vlv~~~~h~s~~~~~~~~---- 119 (294)
T cd00615 58 TGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCGP--------------GDKILIDRNCHKSVINGLVLS---- 119 (294)
T ss_pred ChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCCC--------------CCEEEEeCCchHHHHHHHHHC----
Confidence 3456999999999999988877 566678999999888764 899999999999999998877
Q ss_pred CcEEEEee-----------CCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCccccc-
Q 019931 228 MVEVFVYK-----------HCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFV- 295 (334)
Q Consensus 228 g~~v~~~~-----------~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv- 295 (334)
+++++.++ ..|++++++++++.+ ++++|++.++ +++|.+.|+++|.++|+++|+++++|+||+...
T Consensus 120 g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~-~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~ 197 (294)
T cd00615 120 GAVPVYLKPERNPYYGIAGGIPPETFKKALIEHP-DAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFR 197 (294)
T ss_pred CCEEEEecCccCcccCcCCCCCHHHHHHHHHhCC-CceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhc
Confidence 77766553 247899999997532 5677766666 679999999999999999999999999998642
Q ss_pred ccCCCcccccccCCCCCccEEEecCcccccC--CccEE
Q 019931 296 CGKNGGGVAEQFNCERDVDICVGTLSKAAGC--QGGFI 331 (334)
Q Consensus 296 ~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~--~GG~i 331 (334)
+++... ......++|+++.|++|++++ .||++
T Consensus 198 ~~~~~~----~~~~~~~~div~~S~hK~l~g~~~~~~l 231 (294)
T cd00615 198 FHPILP----SSAAMAGADIVVQSTHKTLPALTQGSMI 231 (294)
T ss_pred cCcccC----cchhhcCCcEEEEchhcccchHhHHHHH
Confidence 111111 111124679999999999975 34554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=166.32 Aligned_cols=211 Identities=17% Similarity=0.128 Sum_probs=140.8
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~A 177 (334)
+|.+|++||||.+. ..+|.+ ||+|.+|+++. ......+....-.++...+|.++|++... .+.+++++||++|
T Consensus 46 ~D~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseA 124 (466)
T PRK07036 46 TDADGRRYLDGIGGMWCVNVGYG-REEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTA 124 (466)
T ss_pred EECCCCEEEECcccHHhhcCCCC-CHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHH
Confidence 46788999999875 457774 89999987543 22222222211235677889999999875 3567888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC---C-----cEEEEeeCCC-----------
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK---M-----VEVFVYKHCD----------- 238 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~---g-----~~v~~~~~~D----------- 238 (334)
++.+++....... ..+ .+++..+|.....+|+.....+.++.... . ..+..++..+
T Consensus 125 ve~AlklAr~~~~--~~g---~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 199 (466)
T PRK07036 125 VDSALRFVHYYFN--VRG---RPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEA 199 (466)
T ss_pred HHHHHHHHHHHHH--hcC---CCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChH
Confidence 9999996432100 000 11245667778889998755444332100 0 0111111111
Q ss_pred ------HHHHHHHHhc-CCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-cc-
Q 019931 239 ------MSHLKTLLSC-CTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AE- 305 (334)
Q Consensus 239 ------~~~Le~~l~~-~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~- 305 (334)
.+.+++.+.. ...+..+|++|++.+..|.+.| +++|+++|++||++||+||+++ | +|++|..+ ++
T Consensus 200 ~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~t-G-fGRtG~~~~~~~ 277 (466)
T PRK07036 200 AFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVT-G-FGRLGHFFASEA 277 (466)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechh-C-CCcCchhhhhhh
Confidence 2345666643 2346789999999999998877 9999999999999999999997 4 78888654 34
Q ss_pred ccCCCCCccEEEecCcccccC
Q 019931 306 QFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 306 ~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++.| ||+ +|+|++|.
T Consensus 278 ~~gv~P--Div--t~gK~l~g 294 (466)
T PRK07036 278 VFGIQP--DII--TFAKGLTS 294 (466)
T ss_pred hcCCCC--CEE--EEcccccc
Confidence 689887 555 89999963
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-17 Score=158.21 Aligned_cols=187 Identities=16% Similarity=0.191 Sum_probs=138.0
Q ss_pred CCHHHHHHHHHhc---CCCCccccc-cC--chHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHhhhhhhccCC
Q 019931 124 SHPTIAKAAARHG---MGPRGSALI-CG--YTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVGNIASLLAGD 195 (334)
Q Consensus 124 ~~p~v~~a~~~~g---~g~~~sr~~-~G--~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~~~~~~~~~~ 195 (334)
.++.+++++.+|- .+..+++.. .+ ....++++++++++++|.+ .+++++++++++..++.++..++.
T Consensus 10 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~----- 84 (353)
T TIGR03235 10 IDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGE----- 84 (353)
T ss_pred CCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcc-----
Confidence 4788888776552 233332221 11 1356789999999999974 455557778899988888764310
Q ss_pred CccCCCCC-eEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCcc
Q 019931 196 EKSFKDEK-IAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFA 269 (334)
Q Consensus 196 ~~~~~~~g-d~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~ 269 (334)
.++ +.|+++...|.++...+..... .|.+++.++. .|+++|++++++ ++++|++++++|++|.+.
T Consensus 85 -----~~g~~~vi~~~~~~~s~~~~~~~~~~-~G~~v~~v~~~~~~~~d~~~l~~~l~~---~~~lv~~~~~~n~tG~~~ 155 (353)
T TIGR03235 85 -----QKGKKHIITSAIEHPAVLEPIRALER-NGFTVTYLPVDESGRIDVDELADAIRP---DTLLVSIMHVNNETGSIQ 155 (353)
T ss_pred -----cCCCCeeeEcccccHHHHHHHHHHHh-cCCEEEEEccCCCCcCCHHHHHHhCCC---CCEEEEEEcccCCceecc
Confidence 123 7899999999998877765432 3778877764 378899988864 689999999999999999
Q ss_pred CHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCc-cEEee
Q 019931 270 PMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQG-GFIAC 333 (334)
Q Consensus 270 pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~G-G~i~~ 333 (334)
|+++|.++|+++|+++++|++|+.|... +++. .++|+++.|++|.+|+.| |++..
T Consensus 156 ~~~~I~~l~~~~~~~~ivD~a~~~g~~~---------~~~~~~~~D~~~~s~~K~~gp~g~g~l~~ 212 (353)
T TIGR03235 156 PIREIAEVLEAHEAFFHVDAAQVVGKIT---------VDLSADRIDLISCSGHKIYGPKGIGALVI 212 (353)
T ss_pred CHHHHHHHHHHcCCEEEEEchhhcCCcc---------ccccccCCCEEEeehhhcCCCCceEEEEE
Confidence 9999999999999999999999987541 2222 468999999999988765 66543
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-17 Score=158.60 Aligned_cols=203 Identities=12% Similarity=0.094 Sum_probs=139.7
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC----C-cEEEeccHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK----E-DCLLCPTGFAANMAVI 182 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~----e-~alv~~sG~~An~~ai 182 (334)
.+++||..+. .....++.+.+++.+. ......+....|...+.+.+.+.+.+.+|. + +++++++|++|+..++
T Consensus 24 ~~~i~l~~g~-p~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~ 102 (387)
T PRK07777 24 TGAVNLGQGF-PDEDGPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAV 102 (387)
T ss_pred CCeEEccCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHH
Confidence 3568988876 4555667777765542 222223333345444444455544444563 2 5778888899999888
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC--------CCHHHHHHHHhcCCCCcE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH--------CDMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~--------~D~~~Le~~l~~~~~~~~ 254 (334)
.+++.+ ||.|++..+.|......+... +.+++.++. .|+++|++++++ +++
T Consensus 103 ~~~~~~--------------gd~vli~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~ 161 (387)
T PRK07777 103 LGLVEP--------------GDEVLLIEPYYDSYAAVIAMA----GAHRVPVPLVPDGRGFALDLDALRAAVTP---RTR 161 (387)
T ss_pred HHhcCC--------------CCEEEEeCCCchhhHHHHHHC----CCEEEEeecCCccCCCcCCHHHHHHhcCc---ccE
Confidence 887654 777888888887777666665 677666653 367788877753 678
Q ss_pred EEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccC-CCcccccccCCCCCccEEEecCcccccCCc--
Q 019931 255 VVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGK-NGGGVAEQFNCERDVDICVGTLSKAAGCQG-- 328 (334)
Q Consensus 255 lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~-~G~g~~~~~~~~~~~Div~~SlsKa~G~~G-- 328 (334)
+|++++++||+|.+.+ +++|+++|++|++++|+||+|....+.. ....+....+ ..+.+|+++||||+||..|
T Consensus 162 ~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~g~~GlR 240 (387)
T PRK07777 162 ALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPG-MRERTVTISSAAKTFNVTGWK 240 (387)
T ss_pred EEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCC-CcCcEEEEeechhhccCcCce
Confidence 8889999999998865 7889999999999999999998665522 1112222111 1345799999999999777
Q ss_pred -cEEeeC
Q 019931 329 -GFIACR 334 (334)
Q Consensus 329 -G~i~~~ 334 (334)
||++++
T Consensus 241 iG~~~~~ 247 (387)
T PRK07777 241 IGWACGP 247 (387)
T ss_pred eEEEecC
Confidence 888764
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-17 Score=157.03 Aligned_cols=202 Identities=16% Similarity=0.141 Sum_probs=141.3
Q ss_pred EEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhC----CC-cEEEeccHHHHHHHHHHHH
Q 019931 111 LLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKK----KE-DCLLCPTGFAANMAVIVAV 185 (334)
Q Consensus 111 ~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e-~alv~~sG~~An~~ai~al 185 (334)
+++|++++ ..+...|.+++++++.......+.-..|...+.+.+.+.+.+..| .+ ++++++++.+|+..++.++
T Consensus 2 ~~~~~~g~-p~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~ 80 (350)
T TIGR03537 2 LFDFGTGD-PKEPTPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVF 80 (350)
T ss_pred eEeccCCC-CCCCCCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHH
Confidence 56888876 457778889998876532222233334443444444444443335 23 5777777788998888888
Q ss_pred hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCCcEEEEE
Q 019931 186 GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMRKKVVVT 258 (334)
Q Consensus 186 ~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~~~lVv~ 258 (334)
++++ +++|.|++..+.+......++.. |++++.++.+ |++++++++++ ++++|++
T Consensus 81 ~~~g-----------~~~d~Vl~~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~~~~---~~~~i~i 142 (350)
T TIGR03537 81 IDPE-----------EDRRRVIFGTPGYPVYERGALFA----GGEPTAVKLKKEDGFLLRLEKVEKSILE---ETKIVWI 142 (350)
T ss_pred cCCC-----------CCCceEEEcCCCCcchHHHHHhc----CCEEEEcccCcccCCccCHHHHHHhhhh---ccEEEEE
Confidence 7651 12478888888888887777766 8888877642 67888888764 6788888
Q ss_pred cCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEe
Q 019931 259 DSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIA 332 (334)
Q Consensus 259 e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~ 332 (334)
.+++||+|.+.| +++|.++|++||+++|+||+|+...++....... ....+..|++.||||++|..| ||++
T Consensus 143 ~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~---~~~~~~~i~~~s~SK~~g~~GlRiG~~~ 219 (350)
T TIGR03537 143 NYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSAL---EVGIENVLAFHSLSKRSGMTGYRSGFVA 219 (350)
T ss_pred eCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchh---hcCcCCEEEEeecccccCCccccceeee
Confidence 899999999988 8889999999999999999998655543221111 112233588999999998776 8887
Q ss_pred eC
Q 019931 333 CR 334 (334)
Q Consensus 333 ~~ 334 (334)
++
T Consensus 220 ~~ 221 (350)
T TIGR03537 220 GD 221 (350)
T ss_pred cC
Confidence 64
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-17 Score=158.54 Aligned_cols=203 Identities=15% Similarity=0.120 Sum_probs=137.4
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhcCC--CCccccccCchHHHHHHHHHHHhHhCC----Cc-EEEeccHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHGMG--PRGSALICGYTNYHRLLESCLADLKKK----ED-CLLCPTGFAANMA 180 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g--~~~sr~~~G~~~~~~~LE~~La~~~g~----e~-alv~~sG~~An~~ 180 (334)
|.++++|++++ ..+..+|.+++++.++-.. ...+....|...+.+.+.+.+.+.+|. ++ +++++++++++..
T Consensus 30 ~~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~ 108 (385)
T PRK09276 30 GVDVISLGIGD-PDLPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAH 108 (385)
T ss_pred CCCEEEecCCC-CCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHH
Confidence 36789999986 3566678888877664321 122333344444444444444433342 33 5555677788888
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCCc
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMRK 253 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~~ 253 (334)
++.+++.+ ||.|++..+.+......++.. |.+++.++.. |++++++.+. .++
T Consensus 109 ~~~~~~~~--------------gd~Vl~~~P~y~~~~~~~~~~----g~~~~~v~~~~~~g~~~d~~~l~~~~~---~~~ 167 (385)
T PRK09276 109 IPLAFVNP--------------GDVVLVPDPGYPVYKIGTIFA----GGEPYFMPLKEENGFLPDLDAIPEDVA---KKA 167 (385)
T ss_pred HHHHhCCC--------------CCEEEEcCCCCcChHHHHHHc----CCEEEEEecCCCCCCcCCHHHHHHhcc---ccc
Confidence 88887764 788888888877776666665 7888877642 4666666554 368
Q ss_pred EEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC--CCCccEEEecCcccccCCc
Q 019931 254 KVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC--ERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 254 ~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~--~~~~Div~~SlsKa~G~~G 328 (334)
++|++++++||+|.+.+ +++|+++|++|++++|+||+|....++ +........+ ..+..|+++||||.||+.|
T Consensus 168 ~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 245 (385)
T PRK09276 168 KLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYD--GYKPPSFLEVPGAKDVGIEFHSLSKTYNMTG 245 (385)
T ss_pred eEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecC--CCCCCChhccCCCcCCEEEEecchhhcCCcc
Confidence 89988899999999988 578889999999999999999876553 2111111111 1234588999999999888
Q ss_pred ---cEEeeC
Q 019931 329 ---GFIACR 334 (334)
Q Consensus 329 ---G~i~~~ 334 (334)
||++++
T Consensus 246 lRiG~~i~~ 254 (385)
T PRK09276 246 WRIGFAVGN 254 (385)
T ss_pred hhheeeeCC
Confidence 998864
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=160.92 Aligned_cols=193 Identities=15% Similarity=0.107 Sum_probs=134.6
Q ss_pred eeEEEeecCc-cCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccH-HHHHHHHHHH
Q 019931 109 KRLLLFSGND-YLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTG-FAANMAVIVA 184 (334)
Q Consensus 109 ~~~l~f~sn~-yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG-~~An~~ai~a 184 (334)
++++||++|+ +++ .+|.+++++.++-.....+ +. +.+.+|+++++++++.+ ..+++++| .+++..++.+
T Consensus 34 ~~~i~l~~~~~~~~--~~~~~~~~~~~~~~~~~~y----~~-~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~ 106 (361)
T PRK00950 34 ESIIKLGSNENPLG--PSPKAVEAIEKELSKIHRY----PE-PDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRT 106 (361)
T ss_pred cceEEccCCCCCCC--CCHHHHHHHHHHHHhhcCC----CC-CCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHH
Confidence 6899999985 555 5788888776543221111 11 22488999999999863 45564556 4566677776
Q ss_pred HhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEc
Q 019931 185 VGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTD 259 (334)
Q Consensus 185 l~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e 259 (334)
++++ ||.|+++.+.+......++.. |.+++.++. .|++++++.++. ++++|+++
T Consensus 107 ~~~~--------------gd~vlv~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~~~ 165 (361)
T PRK00950 107 FIDP--------------GDEVIIPTPTFSYYEISAKAH----GAKPVYAKREEDFSLDVDSVLNAITE---KTKVIFLC 165 (361)
T ss_pred hcCC--------------CCEEEEcCCChHHHHHHHHHc----CCEEEEeecCCCCCcCHHHHHHHhcc---CCCEEEEe
Confidence 6553 777887777666555555544 788877752 267788877753 67888888
Q ss_pred CCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 260 SLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 260 ~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
+++||+|.+.|+++|.++|+++|+++|+||+|... .+.....+.. ..+..++++||||+||..| ||++++
T Consensus 166 ~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~-~~~~~~~~~~----~~~~vi~~~S~SK~~g~~GlRiG~~~~~ 238 (361)
T PRK00950 166 TPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEF-AEYDYTPLAL----EYDNLIIGRTFSKVFGLAGLRIGYGFVP 238 (361)
T ss_pred CCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhh-CccchHHHHH----hcCCEEEEEeehHhhcCchhhcchhcCC
Confidence 99999999999999999999999999999999743 2221111111 1122488899999999877 888764
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-17 Score=159.33 Aligned_cols=204 Identities=18% Similarity=0.110 Sum_probs=136.3
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhcC-C-CCccccccCchHHHHHHHHHHHhHhC----CC-cEEEeccHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHGM-G-PRGSALICGYTNYHRLLESCLADLKK----KE-DCLLCPTGFAANMA 180 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~-g-~~~sr~~~G~~~~~~~LE~~La~~~g----~e-~alv~~sG~~An~~ 180 (334)
|+++++|+.|+ ..+..+|.+++++.+... . ...+....|...+.+++.+.+.+..| .+ .+++++++.+|+..
T Consensus 29 ~~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~ 107 (388)
T PRK07366 29 GKELIDLSLGS-SDLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAH 107 (388)
T ss_pred CCCeEEeCCCC-CCCCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHH
Confidence 47889999886 357678888887765422 1 12222234443443334433333324 23 36666777889998
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCCc
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMRK 253 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~~ 253 (334)
++.+++.+ ||.|++..+.+......++.. |++++.++.. |++++++.+. .++
T Consensus 108 ~~~~l~~~--------------gd~Vlv~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~ 166 (388)
T PRK07366 108 LPLAVLNP--------------GDFALLLDPGYPSHAGGVYLA----GGQIYPMPLRAENDFLPVFADIPTEVL---AQA 166 (388)
T ss_pred HHHHhCCC--------------CCEEEEcCCCCcchHHHHHhc----CCEEEEEECCCccCCCCCHHHHHHhhc---ccc
Confidence 88888765 788888888887777776666 7888887643 3445555443 267
Q ss_pred EEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCC-c-ccccccCCCCCccEEEecCcccccCCc
Q 019931 254 KVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNG-G-GVAEQFNCERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 254 ~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G-~-g~~~~~~~~~~~Div~~SlsKa~G~~G 328 (334)
++|++.+++||+|.+.+ +++|+++|++||++||+||+|...++...- . .+.. .....+..|+++||||+||..|
T Consensus 167 k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~-~~~~~~~vi~~~SfSK~~g~~G 245 (388)
T PRK07366 167 RLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQ-ADPEKSVSIEFFTLSKSYNMGG 245 (388)
T ss_pred eEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhh-CCCCcccEEEEeecccccCCcc
Confidence 88888899999999888 556788999999999999999976553210 1 1111 1111123478899999998776
Q ss_pred ---cEEeeC
Q 019931 329 ---GFIACR 334 (334)
Q Consensus 329 ---G~i~~~ 334 (334)
||++++
T Consensus 246 lRiG~~v~~ 254 (388)
T PRK07366 246 FRIGFAIGN 254 (388)
T ss_pred hhheehcCC
Confidence 888764
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=163.97 Aligned_cols=211 Identities=15% Similarity=0.141 Sum_probs=143.6
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCC---CcEEEeccHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKK---EDCLLCPTGFA 176 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~---e~alv~~sG~~ 176 (334)
++.+|++||||.++ ..||. +||+|.+++.+.. ..........+ ++...+|.++|++..+. +++++++||++
T Consensus 36 ~d~dG~~~lD~~~g~~~~~lGh-~~~~i~~a~~~~~~~~~~~~~~~~~-~~~~~~la~~l~~~~~~~~~~~~~f~~sGse 113 (425)
T PRK08088 36 WDVEGREYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKLSHTCFQVLA-YEPYLELCEKMNQKVPGDFAKKTLLVTTGSE 113 (425)
T ss_pred EeCCCCEEEEcCCchhhcCCCC-CCHHHHHHHHHHHhhCCCccccccC-CHHHHHHHHHHHHhCCCCCCCEEEEeCCcHH
Confidence 45778999999874 34677 4899998775432 22111111122 34456899999998763 56788899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC-----------CcEEEEee--CCC-----
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK-----------MVEVFVYK--HCD----- 238 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~-----------g~~v~~~~--~~D----- 238 (334)
|+..+++.+.. .+++.++|.....+|+.......+..... +.....++ .++
T Consensus 114 a~e~Alklar~-----------~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 182 (425)
T PRK08088 114 AVENAVKIARA-----------ATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDD 182 (425)
T ss_pred HHHHHHHHHHH-----------HhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHH
Confidence 99999987543 12457788888899998766655542100 01111122 121
Q ss_pred -HHHHHHHHhc--CCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCC
Q 019931 239 -MSHLKTLLSC--CTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCE 310 (334)
Q Consensus 239 -~~~Le~~l~~--~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~ 310 (334)
+++|+++++. ...+.++|++|+++++.|.+.| +++|+++|++||++||+||+|+ | +|++|.+. .+++++.
T Consensus 183 ~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~-g-~g~~g~~~~~~~~~~~ 260 (425)
T PRK08088 183 AIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQT-G-AGRTGTLFAMEQMGVA 260 (425)
T ss_pred HHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCcchhHHhhcCCC
Confidence 5678888862 2246789999999999998776 8999999999999999999999 4 67777654 3455554
Q ss_pred CCccEEEecCcccccC--CccEEee
Q 019931 311 RDVDICVGTLSKAAGC--QGGFIAC 333 (334)
Q Consensus 311 ~~~Div~~SlsKa~G~--~GG~i~~ 333 (334)
+ | ++||||+++. .-|++++
T Consensus 261 p--d--i~s~sK~l~~G~rig~v~~ 281 (425)
T PRK08088 261 A--D--LTTFAKSIAGGFPLAGVTG 281 (425)
T ss_pred C--C--EEEEeccccCCCcceeeEe
Confidence 4 4 5799999973 1255665
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.5e-18 Score=161.97 Aligned_cols=198 Identities=17% Similarity=0.104 Sum_probs=140.2
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHHh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al~ 186 (334)
.++++|++|++. +..+|.+++++.+.-... .+ .......+|++.++++++. +++++++++++++..++.+++
T Consensus 29 ~~~i~l~~n~~~-~~~~~~v~~a~~~~~~~~-~~----~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~ 102 (359)
T PRK03158 29 EKIVKLASNENP-YGPSPKVKEAIAAHLDEL-AL----YPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALL 102 (359)
T ss_pred CceEEecCCCCC-CCCCHHHHHHHHHHHHHh-hc----CCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHh
Confidence 478999999754 667899998776532111 00 0112347789999999985 356777777888888887776
Q ss_pred hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC----CHHHHHHHHhcCCCCcEEEEEcCCC
Q 019931 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC----DMSHLKTLLSCCTMRKKVVVTDSLF 262 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~----D~~~Le~~l~~~~~~~~lVv~e~v~ 262 (334)
++ ||.|++..+.+......+... |.+++.++.. |++++++.+++ ++++|++++++
T Consensus 103 ~~--------------gd~v~~~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~d~~~l~~~~~~---~~~~v~i~~p~ 161 (359)
T PRK03158 103 NP--------------GTNTVMAEPTFSQYRHNAIIE----GAEVREVPLKDGGHDLEAMLKAIDE---QTKIVWICNPN 161 (359)
T ss_pred CC--------------CCEEEEcCCCHHHHHHHHHHc----CCeEEEEecCCCCcCHHHHHHhcCC---CCCEEEEeCCC
Confidence 64 788888877776666555554 7788777643 67777776643 67888889999
Q ss_pred CCCCCccCHHHHHHHHHH--cCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 263 SMDGDFAPMVELVKLRRK--YGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 263 n~~G~~~pL~~L~ela~k--~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
||+|.+.|.++|.++++. +|+++|+||+|....++..........+. .+..|+++||||+||..| ||++++
T Consensus 162 NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~g~~GlRiG~~v~~ 237 (359)
T PRK03158 162 NPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEK-YENLIVLRTFSKAYGLAALRVGYGIAS 237 (359)
T ss_pred CCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHh-cCCEEEEEechHhhcCcchhhehhcCC
Confidence 999999999999999887 59999999999875543211111111111 123588999999999877 898764
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-17 Score=158.55 Aligned_cols=203 Identities=14% Similarity=0.085 Sum_probs=144.1
Q ss_pred eEEEeecCccCCCCCCHHHHHHHHHhc-CC-CCccccccCchHHHHHHHHHHHhHhCC----Cc-EEEeccHHHHHHHHH
Q 019931 110 RLLLFSGNDYLGLSSHPTIAKAAARHG-MG-PRGSALICGYTNYHRLLESCLADLKKK----ED-CLLCPTGFAANMAVI 182 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g-~~~sr~~~G~~~~~~~LE~~La~~~g~----e~-alv~~sG~~An~~ai 182 (334)
..+++..++. .+..++.+++|++++- .. ...+....|..+..+.+++.+++++|. ++ +++++++.+++..++
T Consensus 28 ~~~~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~ 106 (389)
T PRK05957 28 GTISLGQGVV-SYPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAI 106 (389)
T ss_pred CeEEccCCCC-CCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHH
Confidence 4577777653 3656788888887652 22 234555677788889999999998884 33 455566677888888
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVV 257 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv 257 (334)
.+++.+ ||.|++..+.+......++.. |.+++.++.+ |+++|++++++ ++++|+
T Consensus 107 ~~~~~~--------------gd~Vlv~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~i~~---~~klv~ 165 (389)
T PRK05957 107 LAITDP--------------GDEIILNTPYYFNHEMAITMA----GCQPILVPTDDNYQLQPEAIEQAITP---KTRAIV 165 (389)
T ss_pred HHhcCC--------------CCEEEEeCCCCcCHHHHHHhc----CCEEEEeecCCCCCcCHHHHHHhcCc---CceEEE
Confidence 777654 777887777766655544444 7887777542 78888888754 688888
Q ss_pred EcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEE
Q 019931 258 TDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFI 331 (334)
Q Consensus 258 ~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i 331 (334)
+.+++||+|.+.| +++|+++|++||++||+||+|....++....-......-.....|++.||||.+|..| ||+
T Consensus 166 ~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~ 245 (389)
T PRK05957 166 TISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYM 245 (389)
T ss_pred EeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEE
Confidence 9999999999888 8889999999999999999998665542111111111011223488999999999888 888
Q ss_pred eeC
Q 019931 332 ACR 334 (334)
Q Consensus 332 ~~~ 334 (334)
+++
T Consensus 246 ~~~ 248 (389)
T PRK05957 246 VIP 248 (389)
T ss_pred ecC
Confidence 763
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-17 Score=158.67 Aligned_cols=203 Identities=12% Similarity=0.105 Sum_probs=140.0
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC----C-cEEEeccHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK----E-DCLLCPTGFAANMAVI 182 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~----e-~alv~~sG~~An~~ai 182 (334)
+..++|..++ ..+..++.+++++.+. ..+...+....|...+.+++.+.+.+.+|. + ++++++++++|+..++
T Consensus 20 ~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~ 98 (378)
T PRK07682 20 EGVISLGVGE-PDFVTPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAM 98 (378)
T ss_pred CCeEEeCCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHH
Confidence 3578888876 3455567777766443 222222222345544544555555444342 3 5777788899999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCCCCcEE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCTMRKKV 255 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~~~~~l 255 (334)
.+++++ ||.|++..+.|..+...+... +.+++.++. .|+++|++++.+ ++++
T Consensus 99 ~~l~~~--------------gd~vl~~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~ 157 (378)
T PRK07682 99 RAIINP--------------GDEVLIVEPSFVSYAPLVTLA----GGVPVPVATTLENEFKVQPAQIEAAITA---KTKA 157 (378)
T ss_pred HHhCCC--------------CCEEEEeCCCchhhHHHHHHc----CCEEEEeecCCccCCCCCHHHHHhhcCc---ccEE
Confidence 888764 788888888887776666655 677777653 267888887754 6788
Q ss_pred EEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---c
Q 019931 256 VVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---G 329 (334)
Q Consensus 256 Vv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G 329 (334)
|++.+++||+|.+.+ +++|+++|++|++++|+||+|...+++.....+....+.. +..|+++||||+||..| |
T Consensus 158 v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~~~~GlR~G 236 (378)
T PRK07682 158 ILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMR-ERTILISGFSKGFAMTGWRLG 236 (378)
T ss_pred EEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhccccc-CCEEEEecCcccccChhhhhh
Confidence 888899999999876 7889999999999999999999766643222222222222 34599999999999878 8
Q ss_pred EEeeC
Q 019931 330 FIACR 334 (334)
Q Consensus 330 ~i~~~ 334 (334)
|++++
T Consensus 237 ~~~~~ 241 (378)
T PRK07682 237 FIAAP 241 (378)
T ss_pred hhhcC
Confidence 88764
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-17 Score=160.93 Aligned_cols=198 Identities=18% Similarity=0.168 Sum_probs=138.3
Q ss_pred eEEEeecCccCCCCCCHHHHHHHHHhcCCCCcccc-----ccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHH-HHHH
Q 019931 110 RLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSAL-----ICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAA-NMAV 181 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~-----~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~A-n~~a 181 (334)
.+++++.++ +|+.+++.+.+++.+. .+...+.. ..|..++++++++++++++|.+ .++++++|+++ +.++
T Consensus 21 ~~~~l~~g~-~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~ 98 (398)
T cd00613 21 SMSFLGSGT-YKHNPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAG 98 (398)
T ss_pred Ccccccccc-cCCcCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHH
Confidence 345666665 6887666555556665 22222222 4667788899999999999976 67777766654 4444
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEE
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVV 256 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lV 256 (334)
+.++..+ +++|.|++...+|++....+.+.....+++++.++++ |+++|++.+.+ ++++|
T Consensus 99 ~~~~~~~------------~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~t~~v 163 (398)
T cd00613 99 LAAIRAY------------HKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSE---EVAAL 163 (398)
T ss_pred HHHHhcc------------cCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCC---CeEEE
Confidence 4444432 1478899999999998888877632334788877764 67888887753 68888
Q ss_pred EEcCCCCCCCCccCH-HHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC------Ccc
Q 019931 257 VTDSLFSMDGDFAPM-VELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC------QGG 329 (334)
Q Consensus 257 v~e~v~n~~G~~~pL-~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~------~GG 329 (334)
++++++ ++|.+.|+ ++|+++|++||++||+|++|+.+. +....+ ..++|++++|++|.+++ .+|
T Consensus 164 iv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~-~~~~~~-------~~~~d~~~~s~~K~~~p~g~Ggp~~g 234 (398)
T cd00613 164 MVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLT-GLKPPG-------EYGADIVVGNLQKTGVPHGGGGPGAG 234 (398)
T ss_pred EEECCC-CCceecchHHHHHHHHHhcCCEEEEEecccccc-CCCChH-------HcCCCEEEeeccccCCCCCCCCCcee
Confidence 888875 78999885 999999999999999999997643 110001 12478999999999832 346
Q ss_pred EEee
Q 019931 330 FIAC 333 (334)
Q Consensus 330 ~i~~ 333 (334)
|++.
T Consensus 235 ~l~~ 238 (398)
T cd00613 235 FFAV 238 (398)
T ss_pred EEEE
Confidence 7654
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-17 Score=164.70 Aligned_cols=204 Identities=18% Similarity=0.163 Sum_probs=139.0
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCCC----cEEEe-ccH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKKE----DCLLC-PTG 174 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~e----~alv~-~sG 174 (334)
+|.+|++||||.++ ..||. +||+|.+|+++.- .+....... -.++...+|.++|++..+.. ..++| +||
T Consensus 53 ~D~dG~~ylD~~~g~~~~~lGH-~~p~v~~Ai~~q~~~~~~~~~~~-~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SG 130 (459)
T PRK06931 53 TDVEGNQYLDCLAGAGTLALGH-NHPDVLQSIQDVLTSGLPLHTLD-LTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSG 130 (459)
T ss_pred EeCCCCEEEEcccchhhccCCC-CCHHHHHHHHHHHhhhccccccc-cCCHHHHHHHHHHHHhCCCccccceEEEeCCCc
Confidence 56788999999886 34676 5899999886543 222111111 13577788999999987532 34455 899
Q ss_pred HHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC--------CcEEEEeeCC---------
Q 019931 175 FAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK--------MVEVFVYKHC--------- 237 (334)
Q Consensus 175 ~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~--------g~~v~~~~~~--------- 237 (334)
++|+.++++.... .+++..+|.....+|+.....+.++.... ...+..++.+
T Consensus 131 sEAve~AlklAr~-----------~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (459)
T PRK06931 131 ADAVEAAIKLAKT-----------YTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGI 199 (459)
T ss_pred HHHHHHHHHHHHH-----------hcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccC
Confidence 9999999996443 23456677788889998766665442100 0112222221
Q ss_pred ----CHHHH----HHHHhc---CCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcc
Q 019931 238 ----DMSHL----KTLLSC---CTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG 302 (334)
Q Consensus 238 ----D~~~L----e~~l~~---~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g 302 (334)
+.+.+ ++.+.+ ...+...|++|++.+..|.+.| |++|+++|++||++||+||+++. +|++|.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tG--fGRtG~~ 277 (459)
T PRK06931 200 GGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAG--FARTGKM 277 (459)
T ss_pred CchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhc--CCcCchH
Confidence 22333 333332 1235789999999998887655 89999999999999999999984 7899987
Q ss_pred c-ccccCCCCCccEEEecCcccccC
Q 019931 303 V-AEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 303 ~-~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
+ .+++++.|| |+ |++|++|.
T Consensus 278 ~a~~~~gv~PD--iv--t~gK~l~g 298 (459)
T PRK06931 278 FAFEHAGIEPD--II--VMSKAVGG 298 (459)
T ss_pred HHhhhcCCCCC--EE--EecccccC
Confidence 6 468898874 55 89999974
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-17 Score=158.16 Aligned_cols=203 Identities=13% Similarity=0.164 Sum_probs=140.2
Q ss_pred eeEEEeecCccCCCCCCHHHHHHH-HHhcCCCCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAA-ARHGMGPRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAANMAVIV 183 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~-~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~An~~ai~ 183 (334)
..++||+.++ ..+..+|.+++++ .........+....|...+.+.+.+.+.+..| .+++++++++++|+..++.
T Consensus 29 ~~~i~l~~g~-p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~ 107 (384)
T PRK06348 29 PDIIDLSLGD-PDLITDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQ 107 (384)
T ss_pred CCcEEcCCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHH
Confidence 3578998876 3566678887744 33333323333344443443444444433223 3567888999999999999
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCCCCcEEE
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCTMRKKVV 256 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~~~~~lV 256 (334)
+++.+ ||.|+++.+.+......+... +++++.++. .|+++|++++++ ++++|
T Consensus 108 ~~~~~--------------gd~vlv~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~v 166 (384)
T PRK06348 108 SILDP--------------GDEVIIHEPYFTPYKDQIEMV----GGKPIILETYEEDGFQINVKKLEALITS---KTKAI 166 (384)
T ss_pred HhcCC--------------CCEEEEeCCCCcchHHHHHHc----CCEEEEecCCcCcCCcCCHHHHHHhhCc---CccEE
Confidence 88764 788888888888887777766 777777652 367888888754 67888
Q ss_pred EEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cE
Q 019931 257 VTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GF 330 (334)
Q Consensus 257 v~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~ 330 (334)
++.+++||+|.+.+ +++|.++|++||++||+||+|...+++.....+....+. ++..|+++||||++|..| ||
T Consensus 167 ~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~SfSK~~~l~GlRiG~ 245 (384)
T PRK06348 167 ILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGM-PERTITFGSFSKDFAMTGWRIGY 245 (384)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCC-cCcEEEEecchhccCCcccccee
Confidence 88899999999887 677888999999999999999976554321121111111 234589999999998766 89
Q ss_pred EeeC
Q 019931 331 IACR 334 (334)
Q Consensus 331 i~~~ 334 (334)
++++
T Consensus 246 ~v~~ 249 (384)
T PRK06348 246 VIAP 249 (384)
T ss_pred eecC
Confidence 8764
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=161.69 Aligned_cols=156 Identities=13% Similarity=0.082 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+...+||++|+++.|.+++++++||++|+..++. ++++ ||.|++....+......+.......+
T Consensus 53 ~p~~~~le~~lA~leg~~~~v~~~sG~aAi~~~l~-~l~~--------------GD~VI~~~~~yg~~~~~~~~~~~~~~ 117 (364)
T PRK07269 53 NPTRAKLEETLAAIESADYALATSSGMSAIVLAFS-VFPV--------------GSKVVAVRDLYGGSFRWFNQQEKEGR 117 (364)
T ss_pred CccHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHH-HhCC--------------CCEEEEecCCcCchHHHHHHHHhcCc
Confidence 36679999999999999999999999999999884 4554 66666555444444333332211112
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
..+. + ..|++++++++++ +|++|++++|.||+|.+.|+++|+++|+++|+++|+|+++..+.++ ..
T Consensus 118 ~~~~-~-~~d~~~l~~~i~~---~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~---------~p 183 (364)
T PRK07269 118 FHFT-Y-ANTEEELIAAIEE---DTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQ---------RP 183 (364)
T ss_pred EEEE-e-cCCHHHHHHhcCc---CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC---------Cc
Confidence 2211 2 3589999998864 7899999999999999999999999999999999999998765432 12
Q ss_pred CCCCccEEEecCcccccC----CccEEee
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+...+||++.|++|.+++ .||+|++
T Consensus 184 l~~gaDivv~S~tK~l~g~~d~~gG~v~~ 212 (364)
T PRK07269 184 IELGADIVLHSATKYLSGHNDVLAGVVVT 212 (364)
T ss_pred hhhCCcEEEecCceeccCCCcccceEEEe
Confidence 334679999999999975 5788775
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-17 Score=159.17 Aligned_cols=187 Identities=18% Similarity=0.155 Sum_probs=135.2
Q ss_pred CCHHHHHHHHHhcC---CCCccccccC--chHHHHHHHHHHHhHhCCC-c-EEEeccHHHHHHHHHHHHhhhhhhccCCC
Q 019931 124 SHPTIAKAAARHGM---GPRGSALICG--YTNYHRLLESCLADLKKKE-D-CLLCPTGFAANMAVIVAVGNIASLLAGDE 196 (334)
Q Consensus 124 ~~p~v~~a~~~~g~---g~~~sr~~~G--~~~~~~~LE~~La~~~g~e-~-alv~~sG~~An~~ai~al~~~~~~~~~~~ 196 (334)
.++.+++++.++.. +..++....| ....++++++.+++++|.+ + +++++++++++..++.++...
T Consensus 12 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~-------- 83 (381)
T PRK02948 12 MSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNA-------- 83 (381)
T ss_pred CCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHh--------
Confidence 46778887755432 1111111111 1356789999999999853 3 445567799999988887642
Q ss_pred ccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCH
Q 019931 197 KSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPM 271 (334)
Q Consensus 197 ~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL 271 (334)
...+++.|+++...|++....++.... .|.+++.++. .|+++|++++++ ++++|++++++|++|.+.|+
T Consensus 84 --~~~~g~~vv~~~~~h~s~~~~~~~~~~-~g~~v~~v~~~~~~~~d~~~l~~~l~~---~~~lv~~~~~~n~tG~~~~~ 157 (381)
T PRK02948 84 --LPQNKKHIITTPMEHASIHSYFQSLES-QGYTVTEIPVDKSGLIRLVDLERAITP---DTVLASIQHANSEIGTIQPI 157 (381)
T ss_pred --ccCCCCEEEECCcccHHHHHHHHHHHh-CCCEEEEEeeCCCCCCCHHHHHHhcCC---CCEEEEEECCcCCcEeehhH
Confidence 001378899999999998777665432 3677776653 478899888864 68899999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc-cEEe
Q 019931 272 VELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG-GFIA 332 (334)
Q Consensus 272 ~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G-G~i~ 332 (334)
++|.++|+++|+++++|++|++|...- .+ . ..++|+++.|++|.+|+.| |++.
T Consensus 158 ~~I~~l~~~~~~~vivD~~~~~g~~~~---~~-~----~~~~d~~~~s~~K~~gp~G~G~l~ 211 (381)
T PRK02948 158 AEIGALLKKYNVLFHSDCVQTFGKLPI---DV-F----EMGIDSLSVSAHKIYGPKGVGAVY 211 (381)
T ss_pred HHHHHHHHHcCCEEEEEChhhcccccc---Cc-c----cCCCCEEEecHHhcCCCCcEEEEE
Confidence 999999999999999999998764321 11 1 1357999999999999776 6654
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.5e-18 Score=164.27 Aligned_cols=210 Identities=18% Similarity=0.125 Sum_probs=146.3
Q ss_pred hhcccceeEEEeec---CccCCCCCCHHHHHHHHH-hcCCCCccccccCchHHHHHHHHHHHhHhC---CCcEEEeccHH
Q 019931 103 TFARQFKRLLLFSG---NDYLGLSSHPTIAKAAAR-HGMGPRGSALICGYTNYHRLLESCLADLKK---KEDCLLCPTGF 175 (334)
Q Consensus 103 ~~~~~g~~~l~f~s---n~yLgl~~~p~v~~a~~~-~g~g~~~sr~~~G~~~~~~~LE~~La~~~g---~e~alv~~sG~ 175 (334)
..+.+||+|||-.| +...|. +||+|.+|+.+ ...-........-+.+ ..+|.++|+++.+ .+++++.+||+
T Consensus 38 l~d~~G~r~lDg~sg~W~~~~Gh-~~~~i~~Ai~~Q~~~l~~~~~~~~t~~P-a~~LA~~L~~~aP~~~l~~vFf~~sGS 115 (449)
T COG0161 38 LTDIDGRRYLDGMSGLWCVNHGH-GRPEIAEAIKKQLDKLPHVMFGGFTHEP-AIELAEKLAELAPEGGLDHVFFTDSGS 115 (449)
T ss_pred EEeCCCCEEEecccHHHHhhcCc-CCHHHHHHHHHHHHhCCchhhcccCCch-HHHHHHHHHHhCCCCCccEEEEeCCch
Confidence 45678899999555 355777 58999997754 3332222222222334 7999999999998 56788889999
Q ss_pred HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC---------cEEEEe--eC--------
Q 019931 176 AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM---------VEVFVY--KH-------- 236 (334)
Q Consensus 176 ~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g---------~~v~~~--~~-------- 236 (334)
+|+..+++....-. ...+ +|. +..+|--...+|++++.++.+...... ..+... ++
T Consensus 116 eAvEtAlKma~qY~--~~~G-~p~--r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~ 190 (449)
T COG0161 116 EAVETALKMALQYW--RARG-QPQ--RKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFG 190 (449)
T ss_pred HHHHHHHHHHHHHH--HhcC-CCc--ceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCC
Confidence 99999999765431 1111 111 233555667899988877665521000 001111 11
Q ss_pred -------CCHHHHHHHHhcCC-CCcEEEEEcCCCCC-CCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc
Q 019931 237 -------CDMSHLKTLLSCCT-MRKKVVVTDSLFSM-DGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV 303 (334)
Q Consensus 237 -------~D~~~Le~~l~~~~-~~~~lVv~e~v~n~-~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~ 303 (334)
...++||+++.+.. .+...+++|++..- .|.+.| |++++++|++||++||+||+-+ | +||+|..+
T Consensus 191 ~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~t-G-FGRTG~~F 268 (449)
T COG0161 191 EGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVAT-G-FGRTGKMF 268 (449)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeeccee-C-CCcCchhh
Confidence 12567888887765 46678999999987 676655 9999999999999999999988 4 89999988
Q ss_pred -ccccCCCCCccEEEecCccccc
Q 019931 304 -AEQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 304 -~~~~~~~~~~Div~~SlsKa~G 325 (334)
++++++.|| |+ |++|++.
T Consensus 269 A~e~~gi~PD--i~--~~aKGLT 287 (449)
T COG0161 269 ACEHAGIVPD--IL--CLAKGLT 287 (449)
T ss_pred hhhhcCCCCC--ee--eeccccc
Confidence 589999885 55 8999995
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.4e-17 Score=157.10 Aligned_cols=203 Identities=14% Similarity=0.113 Sum_probs=141.9
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC----CC-cEEEeccHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK----KE-DCLLCPTGFAANMAVI 182 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e-~alv~~sG~~An~~ai 182 (334)
...+||++++ ..+..+|.+.+++.+. ..+...+....|...+.+.+.+.+.+.+| .+ ++++++++++|+..++
T Consensus 26 ~~~i~l~~g~-p~~~~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~ 104 (387)
T PRK08912 26 HGAINLGQGF-PDDPGPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAAL 104 (387)
T ss_pred CCeEEccCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHH
Confidence 4568998876 3455578887765442 22333344445554554555555544444 23 5777888899998888
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEEE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKVV 256 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lV 256 (334)
.+++.+ ||.|++..+.|......++.. |++++.++.. |+++|++.+.. ++++|
T Consensus 105 ~~~~~~--------------gd~Vlv~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v 163 (387)
T PRK08912 105 LALVEP--------------GDEVVLFQPLYDAYLPLIRRA----GGVPRLVRLEPPHWRLPRAALAAAFSP---RTKAV 163 (387)
T ss_pred HHhcCC--------------CCEEEEeCCCchhhHHHHHHc----CCEEEEEecCcccCcCCHHHHHHHhCc---cceEE
Confidence 887764 788888888888877777665 7887766542 67888887753 67888
Q ss_pred EEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCC-CcccccccCCCCCccEEEecCcccccCCc---c
Q 019931 257 VTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKN-GGGVAEQFNCERDVDICVGTLSKAAGCQG---G 329 (334)
Q Consensus 257 v~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~-G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G 329 (334)
++.+++||+|.+.+ +++|.++|++|++++|+||+|...+++.. ...+....+. .+.+|+++||||.||..| |
T Consensus 164 ~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~g~~GlRiG 242 (387)
T PRK08912 164 LLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGM-RERTVKIGSAGKIFSLTGWKVG 242 (387)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCc-cCceEEEeechhhccCcCceeE
Confidence 88899999999887 66789999999999999999987655421 1122222122 234699999999999877 9
Q ss_pred EEeeC
Q 019931 330 FIACR 334 (334)
Q Consensus 330 ~i~~~ 334 (334)
|++++
T Consensus 243 ~~~~~ 247 (387)
T PRK08912 243 FVCAA 247 (387)
T ss_pred EEecC
Confidence 98764
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.6e-17 Score=165.19 Aligned_cols=200 Identities=13% Similarity=0.131 Sum_probs=143.4
Q ss_pred ccceeEEEeecC--ccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHh------C--CCcEEEeccHH
Q 019931 106 RQFKRLLLFSGN--DYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLK------K--KEDCLLCPTGF 175 (334)
Q Consensus 106 ~~g~~~l~f~sn--~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~------g--~e~alv~~sG~ 175 (334)
..|+.+++|+.. +.+++..++.+++++.+.-.....+....|. .+|++.|++++ + .++++++++++
T Consensus 143 ~~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~----~~lReaia~~~~~~~~~~~~~~~I~it~G~~ 218 (517)
T PRK13355 143 AAGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDTEGYSDSKGL----FSARKAIMQYAQLKGLPNVDVDDIYTGNGVS 218 (517)
T ss_pred HcCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCcCh----HHHHHHHHHHHHhcCCCCCChhHEEEeCcHH
Confidence 356889999884 4568888999999775532222233333443 45566666655 2 24577778888
Q ss_pred HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhc
Q 019931 176 AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSC 248 (334)
Q Consensus 176 ~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~ 248 (334)
+++..++.+++.+ ||.|++..+.+......+.+. |++++.++. .|+++|++++.+
T Consensus 219 eal~~~~~~l~~~--------------Gd~Vli~~P~y~~y~~~~~~~----g~~~v~~~~~~~~~~~~d~~~l~~~~~~ 280 (517)
T PRK13355 219 ELINLSMSALLDD--------------GDEVLIPSPDYPLWTACVNLA----GGTAVHYRCDEQSEWYPDIDDIRSKITS 280 (517)
T ss_pred HHHHHHHHHhCCC--------------CCEEEEcCCCCcCHHHHHHHC----CCEEEEeecCcccCCCCCHHHHHHhcCc
Confidence 9999999888764 788888888888777777666 788877753 277888887754
Q ss_pred CCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCC-cccccccCCCCCc-cEEEecCccc
Q 019931 249 CTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNG-GGVAEQFNCERDV-DICVGTLSKA 323 (334)
Q Consensus 249 ~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G-~g~~~~~~~~~~~-Div~~SlsKa 323 (334)
++++|++.+|+||+|.+.+ +++|+++|++|+++||+||+|...++.... ..+.. +.++. -|.++||||+
T Consensus 281 ---~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~---~~~~~~vi~~~S~SK~ 354 (517)
T PRK13355 281 ---RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIAS---LAPDLFCVTFSGLSKS 354 (517)
T ss_pred ---CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHH---hCCCCeEEEEecchhh
Confidence 7899988999999999988 888999999999999999999865553211 11111 12332 2556999999
Q ss_pred ccCCc---cEEee
Q 019931 324 AGCQG---GFIAC 333 (334)
Q Consensus 324 ~G~~G---G~i~~ 333 (334)
|++.| ||+++
T Consensus 355 ~~~~G~RiG~~i~ 367 (517)
T PRK13355 355 HMIAGYRIGWMIL 367 (517)
T ss_pred ccCcccceEEEEe
Confidence 98877 88873
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.5e-18 Score=160.25 Aligned_cols=196 Identities=15% Similarity=0.170 Sum_probs=134.4
Q ss_pred EEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhh
Q 019931 111 LLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIAS 190 (334)
Q Consensus 111 ~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~ 190 (334)
+|||+||..-+ -+|.+++++.+.-.+. ..+|..+.+.+||++|++++|.+.++++++|++++..++.+++.+
T Consensus 1 ~~~~~~~~~~~--p~~~~~~a~~~~~~~~----~~Y~~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~~~-- 72 (333)
T PRK10534 1 MIDLRSDTVTR--PSRAMLEAMMAAPVGD----DVYGDDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHCER-- 72 (333)
T ss_pred CcccccccCCC--CCHHHHHHHHhccCCC----cccCCCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhcCC--
Confidence 47899998777 5799999887643332 234456788999999999999999999999999999988877654
Q ss_pred hccCCCccCCCCCeEEEEcCCCchhhHHH--HHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCC---CCcEEEEEcC
Q 019931 191 LLAGDEKSFKDEKIAIFSDALNHASIIDG--IRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCT---MRKKVVVTDS 260 (334)
Q Consensus 191 ~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g--~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~---~~~~lVv~e~ 260 (334)
||.|+++.+.|...... ..... +++++.++. .|+++|++++.+.. .++++|++++
T Consensus 73 ------------gd~vi~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~n 137 (333)
T PRK10534 73 ------------GEEYIVGQAAHNYLYEAGGAAVLG---SIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLEN 137 (333)
T ss_pred ------------CCeeEEechhhhhHhcCCchHHhc---CceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEec
Confidence 67777777777543321 22221 355555543 27888888875310 1478888887
Q ss_pred CCCCCCCccCHH---HHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC-CccEEeeC
Q 019931 261 LFSMDGDFAPMV---ELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC-QGGFIACR 334 (334)
Q Consensus 261 v~n~~G~~~pL~---~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~-~GG~i~~~ 334 (334)
++ +|.+.|.+ +|.++|++|+++|++||||.++.....+... ..+....|.++.||||++|+ .|||++++
T Consensus 138 p~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~---~~~~~~~~~~~~s~SK~~~~~~G~~~~~~ 210 (333)
T PRK10534 138 TH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCEL---KEITQYCDSFTICLSKGLGTPVGSLLVGN 210 (333)
T ss_pred CC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCH---HHHHhcCCEEEEEeEcCCCCcccceEEcC
Confidence 65 59998865 4567899999999999998753221111111 11112235566799999997 57778764
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-17 Score=161.47 Aligned_cols=202 Identities=17% Similarity=0.172 Sum_probs=139.2
Q ss_pred eeEEEeecC---ccCCCCC-CHHHHHHHHHhcCCCCc--cccccC-chHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHH
Q 019931 109 KRLLLFSGN---DYLGLSS-HPTIAKAAARHGMGPRG--SALICG-YTNYHRLLESCLADLKKKEDCLLCPTGFAANMAV 181 (334)
Q Consensus 109 ~~~l~f~sn---~yLgl~~-~p~v~~a~~~~g~g~~~--sr~~~G-~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~a 181 (334)
|+++|-... +.+|.+. ++.+++++.++....+. +.+..| ....++.+|+++++++|++.+++|+||++|+..+
T Consensus 74 r~vinatg~v~~tNlg~s~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~gae~alvv~sg~aAi~l~ 153 (454)
T TIGR00474 74 RRVINATGVVLHTNLGRAPLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGAEDALVVNNNAAAVLLA 153 (454)
T ss_pred cceeCCCCcEEeccCCCCCCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHH
Confidence 566664442 3356654 78888877654332211 111111 1345689999999999999999999999999888
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCch------hhHHHHHHhhhcCCcEEEEeeC---CCHHHHHHHHhcCCCC
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHA------SIIDGIRIAERTKMVEVFVYKH---CDMSHLKTLLSCCTMR 252 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~------s~~~g~~ls~~~~g~~v~~~~~---~D~~~Le~~l~~~~~~ 252 (334)
+.++ .+ ||.|++.+..|. ++.+.++.. |++++.+++ .|++++++++++ +
T Consensus 154 l~~l-~~--------------GdeVIvs~~e~v~~ggs~~i~~~~~~~----G~~~~~v~~~~~~~l~dle~aI~~---~ 211 (454)
T TIGR00474 154 LNTL-AK--------------GKEVIVSRGELVEIGGSFRIPDVMEQS----GAKLVEVGTTNRTHLKDYEDAITE---N 211 (454)
T ss_pred HHHh-CC--------------cCEEEECCChhhhhcchhhHHHHHHHc----CCEEEEeCCCCCCCHHHHHHhcCc---C
Confidence 8654 32 566666554432 233333333 899999987 467888888764 7
Q ss_pred cEEEEEcCCCCC--CC--CccCHHHHHHHHHHcCCEEEEecCcccccccCCCc-ccccc----cCCCCCccEEEecCccc
Q 019931 253 KKVVVTDSLFSM--DG--DFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGG-GVAEQ----FNCERDVDICVGTLSKA 323 (334)
Q Consensus 253 ~~lVv~e~v~n~--~G--~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~-g~~~~----~~~~~~~Div~~SlsKa 323 (334)
|++|+.++++|+ +| .+.|+++|+++|++||+++++|. +.|++++.+. |+... .....++|++++|.+|.
T Consensus 212 T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~--~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~ 289 (454)
T TIGR00474 212 TALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDL--GSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKL 289 (454)
T ss_pred CEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEEC--CCcccccchhccCCCCcccccHhHcCCCEEEecCccc
Confidence 899888888875 56 58999999999999999999996 4566655432 22110 11235789999999999
Q ss_pred cc-CCccEEeeC
Q 019931 324 AG-CQGGFIACR 334 (334)
Q Consensus 324 ~G-~~GG~i~~~ 334 (334)
+| ..||+++++
T Consensus 290 LgGp~~G~i~g~ 301 (454)
T TIGR00474 290 LGGPQAGIIVGK 301 (454)
T ss_pred cCCCeEEEEEEC
Confidence 96 468998874
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.6e-17 Score=153.40 Aligned_cols=195 Identities=18% Similarity=0.155 Sum_probs=134.2
Q ss_pred EeecCccCCCCCCHHHHHHHHH--hcCCCCccccccCchHHHHHHHHHHHhHhC--------CCcEEEeccHHHHHHHHH
Q 019931 113 LFSGNDYLGLSSHPTIAKAAAR--HGMGPRGSALICGYTNYHRLLESCLADLKK--------KEDCLLCPTGFAANMAVI 182 (334)
Q Consensus 113 ~f~sn~yLgl~~~p~v~~a~~~--~g~g~~~sr~~~G~~~~~~~LE~~La~~~g--------~e~alv~~sG~~An~~ai 182 (334)
||++++| .+..+|.++.+..+ +......+....|. .++++.++++++ .+.++++++|++|+..++
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~ 76 (350)
T cd00609 2 DLSIGEP-DFPPPPEVLEALAAAALRAGLLGYYPDPGL----PELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLL 76 (350)
T ss_pred CCCCCCC-CCCCCHHHHHHHHHHhhccCCCCCCCCCCc----HHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHH
Confidence 6777775 66677777775554 33333333333444 455555555554 335777889999999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCC-----H--HHHHHHHhcCCCCcEE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCD-----M--SHLKTLLSCCTMRKKV 255 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D-----~--~~Le~~l~~~~~~~~l 255 (334)
.++..+ ++.|+++...|.++...++.. +.+++.++.++ . +.++.+. .+++++
T Consensus 77 ~~~~~~--------------g~~vl~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~ 135 (350)
T cd00609 77 RALLNP--------------GDEVLVPDPTYPGYEAAARLA----GAEVVPVPLDEEGGFLLDLELLEAAK---TPKTKL 135 (350)
T ss_pred HHhCCC--------------CCEEEEcCCCchhHHHHHHHC----CCEEEEEecccccCCccCHHHHHhhc---CccceE
Confidence 887653 788999999999988887766 77777777642 1 3344333 247888
Q ss_pred EEEcCCCCCCCCccCHHHH---HHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---c
Q 019931 256 VVTDSLFSMDGDFAPMVEL---VKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---G 329 (334)
Q Consensus 256 Vv~e~v~n~~G~~~pL~~L---~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G 329 (334)
|++++++|++|.+.|++++ .++|+++|+++|+|++|+.+.++......... ....+.|++++|++|.++..| |
T Consensus 136 v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~K~~~~~g~~~G 214 (350)
T cd00609 136 LYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALAL-LDAYERVIVLRSFSKTFGLPGLRIG 214 (350)
T ss_pred EEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccC-cCccCcEEEEeecccccCCcccceE
Confidence 8888899999999986554 58999999999999999977654333221111 113456899999999997433 7
Q ss_pred EEeeC
Q 019931 330 FIACR 334 (334)
Q Consensus 330 ~i~~~ 334 (334)
+++++
T Consensus 215 ~i~~~ 219 (350)
T cd00609 215 YLIAP 219 (350)
T ss_pred EEecC
Confidence 87753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=162.02 Aligned_cols=194 Identities=20% Similarity=0.218 Sum_probs=135.7
Q ss_pred eeEEE-eecCccCCCCCCHHHHHHHH-----HhcCCCCccccccCchHHHHHHH----HHHHhHhCCCcE-EEeccHHHH
Q 019931 109 KRLLL-FSGNDYLGLSSHPTIAKAAA-----RHGMGPRGSALICGYTNYHRLLE----SCLADLKKKEDC-LLCPTGFAA 177 (334)
Q Consensus 109 ~~~l~-f~sn~yLgl~~~p~v~~a~~-----~~g~g~~~sr~~~G~~~~~~~LE----~~La~~~g~e~a-lv~~sG~~A 177 (334)
++.|| +++++|+ +|.|++++. +|+.|.++++.+.|. +...++| +.+++++|.+.+ ++++||++|
T Consensus 19 ~~~~~~~~~~~~~----~~~v~~a~~~~~~~~~~~g~~~~~~~~~~-~~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a 93 (402)
T cd00378 19 RETLELIASENFT----SPAVMEAMGSDLTNKYAEGYPGKRYYGGC-EYVDEIEDLAIERAKKLFGAEYANVQPHSGSQA 93 (402)
T ss_pred HhCeeeeccCCcC----CHHHHHHhcccccccccCCCCCCcccCCc-hHHHHHHHHHHHHHHHHhCCCceeeecCCcHHH
Confidence 45666 5777886 899999774 456677777777664 3334444 356789998776 445789999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHH-----HHHhhhcCCcEEEE--eeCC------CHHHHHH
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDG-----IRIAERTKMVEVFV--YKHC------DMSHLKT 244 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g-----~~ls~~~~g~~v~~--~~~~------D~~~Le~ 244 (334)
+..++.+++++ ||.|+++.+.|.+.... +... |.++.. ++++ |++++++
T Consensus 94 ~~~~l~~l~~~--------------Gd~Vl~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~id~~~l~~ 155 (402)
T cd00378 94 NLAVYFALLEP--------------GDTIMGLDLSHGGHLTHGSFTKVSAS----GKLFESVPYGVDPETGLIDYDALEK 155 (402)
T ss_pred HHHHHHHhcCC--------------CCEEEEecCccCcccccccccccccc----ceeEEEecCCcCcccCCcCHHHHHH
Confidence 99999998764 78888888887654322 2222 444333 3333 8999999
Q ss_pred HHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc
Q 019931 245 LLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA 324 (334)
Q Consensus 245 ~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~ 324 (334)
++.+ .++++|++.++.+ |...|+++|.++|++||+++|+|++|..|.++. | .. ...+. .+|++++|+||+|
T Consensus 156 ~i~~--~~~~~v~~~~~~~--~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~-g--~~-~~~~~-~~dv~~~s~sK~l 226 (402)
T cd00378 156 MALE--FKPKLIVAGASAY--PRPIDFKRFREIADEVGAYLLVDMAHVAGLVAG-G--VF-PNPLP-GADVVTTTTHKTL 226 (402)
T ss_pred HHHh--CCCCEEEecCccc--CCCcCHHHHHHHHHhcCCEEEEEccchhhhhhc-c--cC-CCccc-CCcEEEeccccCC
Confidence 8864 2567777655543 557799999999999999999999997775532 2 11 11122 4689999999999
Q ss_pred -cCCccEEeeC
Q 019931 325 -GCQGGFIACR 334 (334)
Q Consensus 325 -G~~GG~i~~~ 334 (334)
|..||+++++
T Consensus 227 ~G~~gg~i~~~ 237 (402)
T cd00378 227 RGPRGGLILTR 237 (402)
T ss_pred CCCCceEEEec
Confidence 6688988763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=9e-17 Score=157.09 Aligned_cols=199 Identities=17% Similarity=0.142 Sum_probs=137.8
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC-C-CCccccccCchHHHHHHHHHHHhHh----CC----C-cEEEeccHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM-G-PRGSALICGYTNYHRLLESCLADLK----KK----E-DCLLCPTGFAA 177 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~-g-~~~sr~~~G~~~~~~~LE~~La~~~----g~----e-~alv~~sG~~A 177 (334)
+.+++|+.++. ++..+|.+++++.+.-. . ...+....|. .+|++++++++ |. + ++++++++.++
T Consensus 32 ~~~i~l~~~~p-~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~----~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~ 106 (389)
T PRK08068 32 HDVINLGQGNP-DQPTPEHIVEALQEAAENPANHKYSPFRGY----PFLKEAAADFYKREYGVTLDPETEVAILFGGKAG 106 (389)
T ss_pred CCeEEecCCCC-CCCCCHHHHHHHHHHHhCCCCCCCCCCCCC----HHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHH
Confidence 67899999864 56667888887655321 1 1122223444 44555555554 42 3 46777888888
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCC
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCT 250 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~ 250 (334)
+..++.+++.+ ||.|++..+.+......++.. |++++.++.+ |++++++.+.+
T Consensus 107 l~~~~~~~~~~--------------gd~vlv~~P~y~~~~~~~~~~----g~~~~~i~~~~~~~~~~d~~~l~~~~~~-- 166 (389)
T PRK08068 107 LVELPQCLMNP--------------GDTILVPDPGYPDYLSGVALA----RAQFETMPLIAENNFLPDYTKIPEEVAE-- 166 (389)
T ss_pred HHHHHHHhCCC--------------CCEEEEcCCCCcchHHHHHhc----CCEEEEeecccccCCCCCHHHHHHhccc--
Confidence 88888887764 788898888888877777666 8888887753 45667666643
Q ss_pred CCcEEEEEcCCCCCCCCccCH---HHHHHHHHHcCCEEEEecCcccccccCCC-cccccccCCCCCccEEEecCcccccC
Q 019931 251 MRKKVVVTDSLFSMDGDFAPM---VELVKLRRKYGFLLVLDDAHGTFVCGKNG-GGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~pL---~~L~ela~k~ga~LivDeAh~~Gv~G~~G-~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++|++.+|+||+|.+.+. ++|+++|++|++++|+||+|....+.... ..+....+. .+..|++.||||+||.
T Consensus 167 -~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~-~~~~i~~~S~SK~~g~ 244 (389)
T PRK08068 167 -KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGA-KDVGIELYTLSKTFNM 244 (389)
T ss_pred -cceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCc-cCCEEEEecchhccCC
Confidence 67898888999999999884 67888999999999999999753332111 011111111 2235889999999998
Q ss_pred Cc---cEEeeC
Q 019931 327 QG---GFIACR 334 (334)
Q Consensus 327 ~G---G~i~~~ 334 (334)
.| ||++++
T Consensus 245 ~GlRiG~~~~~ 255 (389)
T PRK08068 245 AGWRVAFAVGN 255 (389)
T ss_pred ccceeEeEecC
Confidence 88 998764
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=156.33 Aligned_cols=200 Identities=17% Similarity=0.140 Sum_probs=140.6
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC-CCCccccccCchHHHHHHHHHHHhHh----CC-----CcEEEeccHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM-GPRGSALICGYTNYHRLLESCLADLK----KK-----EDCLLCPTGFAAN 178 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~-g~~~sr~~~G~~~~~~~LE~~La~~~----g~-----e~alv~~sG~~An 178 (334)
..+|+|+.++ ..+..++.+.+++.+.-. +...+....|. .+|++.+++++ +. +++++++++++|+
T Consensus 30 ~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~----~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al 104 (391)
T PRK07309 30 PGILKLTLGE-PDFTTPDHVKEAAKRAIDANQSHYTGMAGL----LELRQAAADFVKEKYNLDYAPENEILVTIGATEAL 104 (391)
T ss_pred CCeEEcCCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCc----HHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHH
Confidence 4588998876 345667878887765422 22222233444 44555555554 32 3578888889999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC------CCHHHHHHHHhcCCCC
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH------CDMSHLKTLLSCCTMR 252 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~------~D~~~Le~~l~~~~~~ 252 (334)
..++.+++.+ ||.|++..+.|......++.. |.+++.++. .|++.|++++++..++
T Consensus 105 ~~~~~~~~~~--------------gd~vl~~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 166 (391)
T PRK07309 105 SASLTAILEP--------------GDKVLLPAPAYPGYEPIVNLV----GAEIVEIDTTENDFVLTPEMLEKAILEQGDK 166 (391)
T ss_pred HHHHHHhcCC--------------CCEEEEeCCCCcchHHHHHHc----CCEEEEEecCCcCCcCCHHHHHHHhhccCCC
Confidence 9999887754 788888878777776666655 788887764 2678899888654336
Q ss_pred cEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccc-cCCCcccccccCCCCCccEEEecCcccccCCc
Q 019931 253 KKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVC-GKNGGGVAEQFNCERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~-G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G 328 (334)
+++|++.+++||+|.+.+ +++|+++|++|++++|+||+|....+ +........ ..++..|+++||||+||..|
T Consensus 167 ~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~---~~~~~~i~~~S~SK~~g~~G 243 (391)
T PRK07309 167 LKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAE---YLPDQTILINGLSKSHAMTG 243 (391)
T ss_pred eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHH---hccCCEEEEecChhhccCcc
Confidence 788888889999998776 78899999999999999999997655 211112211 12233589999999999877
Q ss_pred ---cEEeeC
Q 019931 329 ---GFIACR 334 (334)
Q Consensus 329 ---G~i~~~ 334 (334)
||++++
T Consensus 244 lRvG~~v~~ 252 (391)
T PRK07309 244 WRIGLIFAP 252 (391)
T ss_pred ceeEEEEeC
Confidence 898864
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=156.42 Aligned_cols=196 Identities=14% Similarity=0.140 Sum_probs=138.6
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC-CCCccccccCchHHHHHHHHHHHhHh----C----CCcEEEeccHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM-GPRGSALICGYTNYHRLLESCLADLK----K----KEDCLLCPTGFAANM 179 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~-g~~~sr~~~G~~~~~~~LE~~La~~~----g----~e~alv~~sG~~An~ 179 (334)
.++++|..++ .++..++.+++++.++-. +...+....|. .+|++.+++++ | .+++++++++++|+.
T Consensus 32 ~~~i~l~~g~-~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~----~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 106 (387)
T PRK08960 32 HDVIHLEIGE-PDFTTAEPIVAAGQAALAAGHTRYTAARGL----PALREAIAGFYAQRYGVDVDPERILVTPGGSGALL 106 (387)
T ss_pred CCeEEeCCCC-CCCCCCHHHHHHHHHHHhcCCCccCCCCCC----HHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHH
Confidence 6788988876 466668889887765422 22222223444 44555566654 3 356778888899999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCTMR 252 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~~~ 252 (334)
.++.+++.+ ||.|++..+.|......+... +.+++.++. .|++++++++++ +
T Consensus 107 ~~~~~~~~~--------------gd~vlv~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~~~~---~ 165 (387)
T PRK08960 107 LASSLLVDP--------------GKHWLLADPGYPCNRHFLRLV----EGAAQLVPVGPDSRYQLTPALVERHWNA---D 165 (387)
T ss_pred HHHHHhcCC--------------CCEEEEcCCCCcchHHHHHhc----CCeEEEEecCcccCCCCCHHHHHHHhCc---c
Confidence 999888764 788998889888877777666 667766653 257788887764 5
Q ss_pred cEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc-
Q 019931 253 KKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG- 328 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G- 328 (334)
+++|++.+++||+|.+.+ +++|+++|++||+++|+||+|....++...... ....++ .|+++||||+||..|
T Consensus 166 ~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~---~~~~~~-vi~~~S~SK~~g~~Gl 241 (387)
T PRK08960 166 TVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASV---LEVDDD-AFVLNSFSKYFGMTGW 241 (387)
T ss_pred ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCh---hhccCC-EEEEeecccccCCccc
Confidence 778888889999999988 456777899999999999999864443211111 222233 488999999999776
Q ss_pred --cEEeeC
Q 019931 329 --GFIACR 334 (334)
Q Consensus 329 --G~i~~~ 334 (334)
||++++
T Consensus 242 RiG~~~~~ 249 (387)
T PRK08960 242 RLGWLVAP 249 (387)
T ss_pred EEEEEEcC
Confidence 888764
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-17 Score=162.20 Aligned_cols=163 Identities=14% Similarity=0.095 Sum_probs=124.4
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+.+..||++||++.|.+.+++++||++|+..++.+++++ ||.|+++...+..+...+.......|
T Consensus 82 ~Pt~~~Le~~lA~leg~~~~iv~~sG~~Ai~~~l~al~~~--------------Gd~Vv~~~p~Y~~~~~~~~~~l~~~G 147 (427)
T PRK07049 82 HPNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFVRP--------------GDVILHSQPLYGGTETLLAKTFRNFG 147 (427)
T ss_pred CcCHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhCC--------------CCEEEEcCCCcccHHHHHHHHHHhcC
Confidence 3566899999999999999999999999999999988875 77788777766655443321111227
Q ss_pred cEEEEee-CCCHHHHHHHHhcC--CCCcEEEEEcCCCCCCCCccCHHHHHHHHHH------cCCEEEEecCcccccccCC
Q 019931 229 VEVFVYK-HCDMSHLKTLLSCC--TMRKKVVVTDSLFSMDGDFAPMVELVKLRRK------YGFLLVLDDAHGTFVCGKN 299 (334)
Q Consensus 229 ~~v~~~~-~~D~~~Le~~l~~~--~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k------~ga~LivDeAh~~Gv~G~~ 299 (334)
.+++.+. ..|++++++.+.+. ++++++|++++++||+|.+.|+++|.+++++ +++++|+||++...+.
T Consensus 148 i~~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~--- 224 (427)
T PRK07049 148 VGAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVF--- 224 (427)
T ss_pred cEEEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcccccc---
Confidence 7766654 45888888877532 2368999999999999999999999999988 8999999999764322
Q ss_pred CcccccccCCCCCccEEEecCcccccC----CccEEeeC
Q 019931 300 GGGVAEQFNCERDVDICVGTLSKAAGC----QGGFIACR 334 (334)
Q Consensus 300 G~g~~~~~~~~~~~Div~~SlsKa~G~----~GG~i~~~ 334 (334)
..++..++||++.||||++|+ .+||++++
T Consensus 225 ------~~pl~~g~divv~S~SK~~gG~~glr~G~vv~~ 257 (427)
T PRK07049 225 ------QKPLEHGADLSVYSLTKYVGGHSDLVAGAVLGR 257 (427)
T ss_pred ------CCccccCCCEEEEcCceeecCCCCcEEEEEECC
Confidence 112233568999999999985 45777753
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.5e-17 Score=158.21 Aligned_cols=187 Identities=19% Similarity=0.184 Sum_probs=138.1
Q ss_pred CCHHHHHHHHHh----cC--CCCccccccCchHHHHHHHHHHHhHhCCC--cEEEe-ccHHHHHHHHHHHHhhhhhhccC
Q 019931 124 SHPTIAKAAARH----GM--GPRGSALICGYTNYHRLLESCLADLKKKE--DCLLC-PTGFAANMAVIVAVGNIASLLAG 194 (334)
Q Consensus 124 ~~p~v~~a~~~~----g~--g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~-~sG~~An~~ai~al~~~~~~~~~ 194 (334)
.+..|.+++.+| .. +.+.+....-.+...++.++++++|+|++ +.++| .+.++|+..+..++... +
T Consensus 34 ~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~---~-- 108 (405)
T COG0520 34 KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRS---L-- 108 (405)
T ss_pred CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhh---h--
Confidence 477788877643 22 22233333323567799999999999976 44555 55567777777766421 0
Q ss_pred CCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCcc
Q 019931 195 DEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFA 269 (334)
Q Consensus 195 ~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~ 269 (334)
.+||.|++....|.+.+-.++......|++++.++.+ |++++++++.+ +|++|.+.+++|.+|.+.
T Consensus 109 ------~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~---~Tklvais~vSn~tG~~~ 179 (405)
T COG0520 109 ------KPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITP---KTKLVALSHVSNVTGTVN 179 (405)
T ss_pred ------cCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCC---CceEEEEECccccccccc
Confidence 1478899889999887766665544448888888743 67888887764 899999999999999999
Q ss_pred CHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcc-cccCCc-cEEee
Q 019931 270 PMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSK-AAGCQG-GFIAC 333 (334)
Q Consensus 270 pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsK-a~G~~G-G~i~~ 333 (334)
|+++|.++||++|++++||.+|+.|.+ ..++. -++|+++.|.+| -+|+.| |++.+
T Consensus 180 pv~~I~~la~~~ga~v~VDaaq~~~h~---------~idv~~l~~Df~afsgHKwl~gP~GiGvLy~ 237 (405)
T COG0520 180 PVKEIAELAHEHGALVLVDAAQAAGHL---------PIDVQELGCDFLAFSGHKWLLGPTGIGVLYV 237 (405)
T ss_pred hHHHHHHHHHHcCCEEEEECccccCcc---------CCCchhcCCCEEEEcccccccCCCceEEEEE
Confidence 999999999999999999999998743 12332 578999999999 667767 77654
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=156.54 Aligned_cols=200 Identities=17% Similarity=0.141 Sum_probs=135.8
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHH-HhcCC-CCccccccCchHHHHHHHHHHHhHh----C----CCc-EEEeccHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAA-RHGMG-PRGSALICGYTNYHRLLESCLADLK----K----KED-CLLCPTGFA 176 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~-~~g~g-~~~sr~~~G~~~~~~~LE~~La~~~----g----~e~-alv~~sG~~ 176 (334)
|+++++|..++. ....++.+.+++. +.... ...+....|. .+|++++++++ | .+. +++++++++
T Consensus 34 g~~~i~l~~g~p-~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~----~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~ 108 (394)
T PRK05942 34 GLDLIDLGMGNP-DGAAPQPVIEAAIAALADPQNHGYPPFEGT----ASFRQAITDWYHRRYGVELDPDSEALPLLGSKE 108 (394)
T ss_pred CCCeEEcCCCCC-CCCCCHHHHHHHHHHHhCCCCccCCCCCCC----HHHHHHHHHHHHHHHCCCcCCCCeEEEccChHH
Confidence 367899988753 4445666666543 33211 1222223343 34555555554 4 233 566777888
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcC
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCC 249 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~ 249 (334)
|+..++.+++.+ ||.|++..+.+......+... |.+++.++. .|++++++.+.+
T Consensus 109 al~~~~~~~~~~--------------gd~Vlv~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~~~~- 169 (394)
T PRK05942 109 GLTHLALAYVNP--------------GDVVLVPSPAYPAHFRGPLIA----GAQIYPIILKPENDWLIDLSSIPEEVAQ- 169 (394)
T ss_pred HHHHHHHHhCCC--------------CCEEEEcCCCCcchHHHHHHc----CCEEEEeecCCccCCccCHHHHHHhccc-
Confidence 998888887764 788888888887776665555 788877754 267788777753
Q ss_pred CCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCC-CcccccccCCCCCccEEEecCccccc
Q 019931 250 TMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKN-GGGVAEQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 250 ~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~-G~g~~~~~~~~~~~Div~~SlsKa~G 325 (334)
++++|++.+++||+|.+.+ +++|.++|++||+++|+||+|....+... ...+....+ .++..|+++||||+||
T Consensus 170 --~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~-~~~~~i~~~SfSK~~~ 246 (394)
T PRK05942 170 --QAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPG-AKDIGVEFHTLSKTYN 246 (394)
T ss_pred --cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCC-ccccEEEEecchhccC
Confidence 7899998899999999988 77889999999999999999987654211 111111111 1334588999999999
Q ss_pred CCc---cEEeeC
Q 019931 326 CQG---GFIACR 334 (334)
Q Consensus 326 ~~G---G~i~~~ 334 (334)
+.| ||++++
T Consensus 247 ~~GlRiG~i~~~ 258 (394)
T PRK05942 247 MAGWRVGFVVGN 258 (394)
T ss_pred ChhhheeeeecC
Confidence 877 898764
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.7e-17 Score=156.08 Aligned_cols=186 Identities=16% Similarity=0.134 Sum_probs=134.9
Q ss_pred CHHHHHHHHHhc----CC--CCccccccCchHHHHHHHHHHHhHhCCC---cEEEeccHHHHHHHHHHHHhhhhhhccCC
Q 019931 125 HPTIAKAAARHG----MG--PRGSALICGYTNYHRLLESCLADLKKKE---DCLLCPTGFAANMAVIVAVGNIASLLAGD 195 (334)
Q Consensus 125 ~p~v~~a~~~~g----~g--~~~sr~~~G~~~~~~~LE~~La~~~g~e---~alv~~sG~~An~~ai~al~~~~~~~~~~ 195 (334)
++.+.++++++- .. ++.++..........++++.+++++|.+ .+++++++++++..++.++...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~------- 84 (373)
T cd06453 12 PQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRA------- 84 (373)
T ss_pred CHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhc-------
Confidence 577777776542 11 1111112223456788999999999976 5677788899999988887651
Q ss_pred CccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC
Q 019931 196 EKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP 270 (334)
Q Consensus 196 ~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p 270 (334)
..+++.|++....|.+............+++++.++.+ |+++|++++.+ ++++|++.+++|++|.+.|
T Consensus 85 ----~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~~~tG~~~~ 157 (373)
T cd06453 85 ----NKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTE---RTKLVAVTHVSNVLGTINP 157 (373)
T ss_pred ----CCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcC---CceEEEEeCcccccCCcCC
Confidence 01377788888899886544332211227788777653 78899998865 6889999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccccCCc-cEEee
Q 019931 271 MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAAGCQG-GFIAC 333 (334)
Q Consensus 271 L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~G~~G-G~i~~ 333 (334)
+++|.++|+++|++|++|++|+.|... +.+ ..++|++++|++|.+++.| |++++
T Consensus 158 ~~~i~~~~~~~~~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~~~~g~g~~~~ 213 (373)
T cd06453 158 VKEIGEIAHEAGVPVLVDGAQSAGHMP---------VDVQDLGCDFLAFSGHKMLGPTGIGVLYG 213 (373)
T ss_pred HHHHHHHHHHcCCEEEEEhhhhcCcee---------eeccccCCCEEEeccccccCCCCcEEEEE
Confidence 999999999999999999999876431 111 2357899999999998765 77765
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-17 Score=158.37 Aligned_cols=188 Identities=16% Similarity=0.118 Sum_probs=133.2
Q ss_pred CCHHHHHHHHHhc----CCCCc-cccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHhhhhhhccCCC
Q 019931 124 SHPTIAKAAARHG----MGPRG-SALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVGNIASLLAGDE 196 (334)
Q Consensus 124 ~~p~v~~a~~~~g----~g~~~-sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~~~~~~~~~~~ 196 (334)
.++.+++++.++- ....+ +....+....++++++.+++++|.+ .+++.+++++++..++.++...
T Consensus 29 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~-------- 100 (397)
T TIGR01976 29 IPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRR-------- 100 (397)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhc--------
Confidence 4678888765532 22211 2222233466789999999999964 3555577777777666665321
Q ss_pred ccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC
Q 019931 197 KSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP 270 (334)
Q Consensus 197 ~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p 270 (334)
.++||.|++....|.+....+.......|++++.++.+ |++++++++++ ++++|++++++|++|.+.|
T Consensus 101 ---~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~---~~~lv~i~~~~n~tG~~~~ 174 (397)
T TIGR01976 101 ---WGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSP---RTRLVAVTAASNTLGSIVD 174 (397)
T ss_pred ---CCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCC---CceEEEEeCCCCCCCccCC
Confidence 02478899999999887655422111227887776542 68888888864 6899999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCccEEeeC
Q 019931 271 MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQGGFIACR 334 (334)
Q Consensus 271 L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~GG~i~~~ 334 (334)
+++|.++|+++|+++++|++|..|.. . ..+. .++|++++|++|.+|...|+++++
T Consensus 175 ~~~i~~~~~~~~~~~ivD~a~~~~~~------~---~~~~~~~~d~~~~s~~K~~g~~~G~l~~~ 230 (397)
T TIGR01976 175 LAAITELVHAAGALVVVDAVHYAPHG------L---IDVQATGADFLTCSAYKFFGPHMGILWGR 230 (397)
T ss_pred HHHHHHHHHHcCCEEEEehhhhcccc------C---CCHHHcCCCEEEEechhhcCCceEEEEEc
Confidence 99999999999999999999975421 1 1121 357899999999999877887753
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=164.53 Aligned_cols=210 Identities=15% Similarity=0.137 Sum_probs=141.7
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFA 176 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~ 176 (334)
.+|.+|++||||.++ ..||. +||+|.+|+++. ......+.... .++...+|.++|++++.. +.+++++||++
T Consensus 25 l~D~dG~~ylD~~~g~~~~~lGh-~hp~v~~Ai~~ql~~~~~~~~~~~-~~~~~~~lae~L~~~~p~~~~~v~f~~sGsE 102 (447)
T PRK06917 25 LYDQNGNKYFDGSSGAVTAGIGH-GVKEIADAIKEQAEEVSFVYRSQF-TSEPAEKLAKKLSDLSPGDLNWSFFVNSGSE 102 (447)
T ss_pred EEeCCCCEEEECchhHHhccCCC-CCHHHHHHHHHHHhhCcCcccccc-CCHHHHHHHHHHHHhCCCCCCEEEEeCChHH
Confidence 356788999999875 34677 489999987543 32221111111 246668899999998853 46777899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC----------CcEEEEeeC----------
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK----------MVEVFVYKH---------- 236 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~----------g~~v~~~~~---------- 236 (334)
|++++++....... .+..+++..+|.....+|+.....+.++.... +.....++.
T Consensus 103 Ave~AlklAr~~~~-----~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 177 (447)
T PRK06917 103 ANETAMKIAIQHFQ-----ERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVY 177 (447)
T ss_pred HHHHHHHHHHHHHH-----hcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCCh
Confidence 99999996532100 00012345667778889988766655442100 001111110
Q ss_pred -----CCHHHHHHHHhcCC-CCcEEEEEcCCCCC-CCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-
Q 019931 237 -----CDMSHLKTLLSCCT-MRKKVVVTDSLFSM-DGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA- 304 (334)
Q Consensus 237 -----~D~~~Le~~l~~~~-~~~~lVv~e~v~n~-~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~- 304 (334)
++.+.+++++++.. .+...|++|++... .|.+.| +++|+++|++||++||+||+++ | +|++|.+++
T Consensus 178 ~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~t-G-fGRtG~~~a~ 255 (447)
T PRK06917 178 PTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMT-G-LGRTGAMFAM 255 (447)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhh-C-cCcccchhhH
Confidence 13467788887543 35789999999874 455544 8999999999999999999998 6 899998874
Q ss_pred cccCCCCCccEEEecCccccc
Q 019931 305 EQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 305 ~~~~~~~~~Div~~SlsKa~G 325 (334)
+++++.|| |+ +|+|++|
T Consensus 256 ~~~gv~PD--i~--~~gK~l~ 272 (447)
T PRK06917 256 EHWGVEPD--IM--TLGKGLG 272 (447)
T ss_pred HhcCCCCC--EE--Eeeehhc
Confidence 68898874 54 8999996
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=178.56 Aligned_cols=203 Identities=18% Similarity=0.146 Sum_probs=143.3
Q ss_pred hhcccceeEEEeecCc-cCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHH
Q 019931 103 TFARQFKRLLLFSGND-YLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAAN 178 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn~-yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An 178 (334)
.+|.+|++||||.++. .||. +||+|.+|+++. ......+++ .++...+|.++|++.... +.+++++||++||
T Consensus 618 l~D~dG~~ylD~~~g~~~lGH-~hp~v~~Ai~~q~~~l~~~~~~---~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~ 693 (1013)
T PRK06148 618 LIDNRGRAYLDCFNNVCHVGH-AHPRVVAAAARQAARLNTNTRY---LHDAIVAYAERLTATLPDGLTVAFFVNSGSEAN 693 (1013)
T ss_pred EEECCCCEEEEcccChhhcCC-CCHHHHHHHHHHHhhcCCcCCc---CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHH
Confidence 5689999999998872 3454 599999987543 332222222 256778899999998753 6688889999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc---C---C--cEEE--------EeeCC--CH-
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT---K---M--VEVF--------VYKHC--DM- 239 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~---~---g--~~v~--------~~~~~--D~- 239 (334)
.++++.... .+++..+|..+..+|+.....+.++... . + ..+. +.+.+ |.
T Consensus 694 e~AlklAr~-----------~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 762 (1013)
T PRK06148 694 SLALRLARA-----------HTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAE 762 (1013)
T ss_pred HHHHHHHHH-----------hcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhh
Confidence 999996443 2456778888999998865544433100 0 0 1111 11122 21
Q ss_pred ------HHHHHHHhc---CCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCc-cc-c
Q 019931 240 ------SHLKTLLSC---CTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGG-GV-A 304 (334)
Q Consensus 240 ------~~Le~~l~~---~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~-g~-~ 304 (334)
+.++++++. ...+...|++|++.+..|.+.| |++|+++|++||+++|+||+++. +|++|. ++ .
T Consensus 763 ~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtG--fGRtG~~~~a~ 840 (1013)
T PRK06148 763 HGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVG--FGRVGSHWWAF 840 (1013)
T ss_pred hHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccC--CCCCCCcchhh
Confidence 456666642 2246789999999999898776 99999999999999999999984 788886 33 5
Q ss_pred cccCCCCCccEEEecCcccccC
Q 019931 305 EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 305 ~~~~~~~~~Div~~SlsKa~G~ 326 (334)
+++++.| ||+ ||+|++|.
T Consensus 841 e~~gv~P--Div--t~gK~lgg 858 (1013)
T PRK06148 841 ETQGVVP--DIV--TMGKPIGN 858 (1013)
T ss_pred hhcCCCc--cee--eecccccC
Confidence 7889987 454 89999973
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=158.52 Aligned_cols=199 Identities=16% Similarity=0.160 Sum_probs=142.2
Q ss_pred ceeEEEeecCcc--C-CCCCCHHHHHHHHHhc-CCC-CccccccCchHHHHHHHHHHHhHhC--------CCcEEEeccH
Q 019931 108 FKRLLLFSGNDY--L-GLSSHPTIAKAAARHG-MGP-RGSALICGYTNYHRLLESCLADLKK--------KEDCLLCPTG 174 (334)
Q Consensus 108 g~~~l~f~sn~y--L-gl~~~p~v~~a~~~~g-~g~-~~sr~~~G~~~~~~~LE~~La~~~g--------~e~alv~~sG 174 (334)
|+++|+++..|. + .+..+|.+++++.+.- .+. ..+....|. .+|++.++++++ .+++++++++
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~----~~lr~aia~~~~~~~~~~~~~~~v~it~G~ 126 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGL----LPARRAIAEYLSRDLPYELSTDDIYLTAGC 126 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccC----HHHHHHHHHHHhhccCCCCChhhEEEeCCH
Confidence 588999988753 2 4777888888776532 221 123333444 455666666553 2568888999
Q ss_pred HHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHh
Q 019931 175 FAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLS 247 (334)
Q Consensus 175 ~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~ 247 (334)
++|+..++.+++.+ ||.|++..+.+..+.....+. +.+++.++. .|+++|+++++
T Consensus 127 ~~al~l~~~~l~~~--------------Gd~Vlv~~P~y~~y~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~~~ 188 (430)
T PLN00145 127 AQAIEIIMSVLAQP--------------GANILLPRPGYPLYEARAVFS----GLEVRHFDLLPERGWEVDLEGVEALAD 188 (430)
T ss_pred HHHHHHHHHHhcCC--------------CCEEEEcCCCCccHHHHHHHc----CCEEEEeeCCcccCCcCCHHHHHHHhC
Confidence 99999999988764 788888888777766555555 777777753 27889988876
Q ss_pred cCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCC-CcccccccCCCCCccEEEecCccc
Q 019931 248 CCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKN-GGGVAEQFNCERDVDICVGTLSKA 323 (334)
Q Consensus 248 ~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~-G~g~~~~~~~~~~~Div~~SlsKa 323 (334)
+ ++++|++.+++||+|.+.| +++|+++|+++|+++|+||+|...+++.. ..... .++-.. .-|+++||||.
T Consensus 189 ~---~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~-~~~~~~-~vi~~~S~SK~ 263 (430)
T PLN00145 189 E---NTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMG-VFGEVA-PVLTLGSISKR 263 (430)
T ss_pred c---CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchh-hhcccC-cEEEEeccccc
Confidence 4 6888999999999999998 78889999999999999999987665421 11111 111111 24899999999
Q ss_pred ccCCc---cEEee
Q 019931 324 AGCQG---GFIAC 333 (334)
Q Consensus 324 ~G~~G---G~i~~ 333 (334)
|++.| ||+++
T Consensus 264 ~~~pG~RlG~iv~ 276 (430)
T PLN00145 264 WVVPGWRLGWIAT 276 (430)
T ss_pred cCCCCeeEEEEEE
Confidence 99888 89874
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=154.77 Aligned_cols=179 Identities=16% Similarity=0.139 Sum_probs=131.0
Q ss_pred CCCCHHHHHHHHHhcC------CCCccccccCchHHHHHHHHHHHhHhCCC---cEEEeccHHHHHHHHHHHHhhhhhhc
Q 019931 122 LSSHPTIAKAAARHGM------GPRGSALICGYTNYHRLLESCLADLKKKE---DCLLCPTGFAANMAVIVAVGNIASLL 192 (334)
Q Consensus 122 l~~~p~v~~a~~~~g~------g~~~sr~~~G~~~~~~~LE~~La~~~g~e---~alv~~sG~~An~~ai~al~~~~~~~ 192 (334)
+..++.+++++.++-. +.+.++...+....+.++++.+++++|.+ .+++++++++++..++.+++++
T Consensus 10 ~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~---- 85 (376)
T TIGR01977 10 YPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLKE---- 85 (376)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccCC----
Confidence 3445778886654321 11122222223467789999999999964 3566688899998888876553
Q ss_pred cCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCC
Q 019931 193 AGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGD 267 (334)
Q Consensus 193 ~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~ 267 (334)
+|.|++....|.+....+.......+.+++.++. .|+++|++++++ ++++|++.+++|++|.
T Consensus 86 ----------gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~---~~~~v~~~~~~n~tG~ 152 (376)
T TIGR01977 86 ----------GDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKT---NTKLIVVSHASNVTGT 152 (376)
T ss_pred ----------CCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCC---CCeEEEEECCCCCccc
Confidence 7889988888988765543322222677777654 378888888854 6889999999999999
Q ss_pred ccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccC
Q 019931 268 FAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGC 326 (334)
Q Consensus 268 ~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~ 326 (334)
+.|+++|.++|+++|+++|+|++|++|... +++. .++|+++.|++|.+++
T Consensus 153 ~~~~~~i~~l~~~~~~~livD~a~~~g~~~---------~~~~~~~~D~~~~s~~K~l~~ 203 (376)
T TIGR01977 153 ILPIEEIGELAQENGIFFILDAAQTAGVIP---------IDMTELAIDMLAFTGHKGLLG 203 (376)
T ss_pred cCCHHHHHHHHHHcCCEEEEEhhhccCccC---------CCchhcCCCEEEecccccccC
Confidence 999999999999999999999999987542 1121 4689999999999854
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-17 Score=159.25 Aligned_cols=197 Identities=17% Similarity=0.195 Sum_probs=140.6
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC-----CCCcccc-ccC--chHHHHHHHHHHHhHhCCCc--EEEeccHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM-----GPRGSAL-ICG--YTNYHRLLESCLADLKKKED--CLLCPTGFAAN 178 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~-----g~~~sr~-~~G--~~~~~~~LE~~La~~~g~e~--alv~~sG~~An 178 (334)
+-|+|.++. + ..++.+++++.+|-. +...++. ..+ ..+..+++|+++++++|.+. ++++++|++|+
T Consensus 4 ~iyld~a~~---~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al 79 (404)
T PRK14012 4 PIYLDYSAT---T-PVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESD 79 (404)
T ss_pred eEEecCcCC---C-CCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHH
Confidence 345555443 2 257888887766532 1111111 111 13567889999999999753 77889999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCc
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRK 253 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~ 253 (334)
..++.++... ..++||.|++....|.+....+..... .|++++.++. .|+++|++++++ ++
T Consensus 80 ~~~l~~l~~~----------~~~~gd~Vi~~~~~~~s~~~~~~~~~~-~g~~~~~v~~~~~g~~d~~~l~~~i~~---~t 145 (404)
T PRK14012 80 NLAIKGAAHF----------YQKKGKHIITSKTEHKAVLDTCRQLER-EGFEVTYLDPQSNGIIDLEKLEAAMRD---DT 145 (404)
T ss_pred HHHHHHHHHh----------hcCCCCEEEEecCccHHHHHHHHHHHh-CCCEEEEEccCCCCcCCHHHHHHhcCC---CC
Confidence 9988876521 002478899999999887766654322 2777777654 288999998864 68
Q ss_pred EEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccccCCc-cEE
Q 019931 254 KVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAAGCQG-GFI 331 (334)
Q Consensus 254 ~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~G~~G-G~i 331 (334)
++|++.+++|++|.+.|+++|.++|+++|+++++|++|++|... ..+ ..++|+++.|++|.+|+.| |++
T Consensus 146 ~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~---------~~~~~~~~D~~~~s~~K~~gp~g~G~l 216 (404)
T PRK14012 146 ILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVP---------IDLSKLKVDLMSFSAHKIYGPKGIGAL 216 (404)
T ss_pred EEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcc---------cCcccCCCCEEEEehhhccCCCceEEE
Confidence 99999999999999999999999999999999999999976431 111 1357899999999888755 554
Q ss_pred e
Q 019931 332 A 332 (334)
Q Consensus 332 ~ 332 (334)
.
T Consensus 217 ~ 217 (404)
T PRK14012 217 Y 217 (404)
T ss_pred E
Confidence 3
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=157.49 Aligned_cols=196 Identities=18% Similarity=0.193 Sum_probs=140.0
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhc---CCCCccccc-cC--chHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHG---MGPRGSALI-CG--YTNYHRLLESCLADLKKKE--DCLLCPTGFAANMA 180 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g---~g~~~sr~~-~G--~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ 180 (334)
+-|+|.++.. ..++.|++++.+|- .+...++.. .+ .....+++++++++++|.+ .+++++++++++..
T Consensus 4 ~~yld~aa~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~ 79 (402)
T TIGR02006 4 PIYLDYAATT----PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNL 79 (402)
T ss_pred cEEeeCCcCC----CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHH
Confidence 4567766543 24788888775542 122111111 11 1345688999999999964 46677888899998
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEE
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKV 255 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~l 255 (334)
++.++... ..+++|.|++....|.++...+..... .|.+++.++.+ |+++|++++++ ++++
T Consensus 80 ~l~~l~~~----------~~~~g~~Vi~~~~~h~s~~~~~~~~~~-~g~~v~~v~~~~~~~~d~~~l~~~l~~---~~~l 145 (402)
T TIGR02006 80 AIKGIAHF----------YKSKGNHIITSKTEHKAVLDTCRYLER-EGFEVTYLPPKSNGLIDLEELKAAIRD---DTIL 145 (402)
T ss_pred HHHHHHHh----------hcCCCCEEEECCCccHHHHHHHHHHHh-cCCEEEEEccCCCCcCCHHHHHHhcCC---CCEE
Confidence 88776431 002478899888999998776654322 27777777642 78888888864 6899
Q ss_pred EEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccccCCc-cEE
Q 019931 256 VVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAAGCQG-GFI 331 (334)
Q Consensus 256 Vv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~G~~G-G~i 331 (334)
|++.+++|++|.+.|+++|.++|+++|+++++|++|++|... .++ ..++|+++.|.+|.+|+.| |++
T Consensus 146 v~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~---------~~~~~~~~D~~~~s~~K~~gp~G~G~l 214 (402)
T TIGR02006 146 VSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIP---------INVNELKVDLMSISGHKIYGPKGIGAL 214 (402)
T ss_pred EEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcc---------cCccccCCCEEEEehhhhcCCCceEEE
Confidence 999999999999999999999999999999999999976432 112 1357999999999988654 443
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.6e-17 Score=156.75 Aligned_cols=198 Identities=16% Similarity=0.099 Sum_probs=135.5
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~ 186 (334)
+.+++|+.|+ .++..+|.+++++.+......+ ++.. ...+|+++||++++.+ .+++++++.+++..++.+++
T Consensus 32 ~~~~~l~~~~-~~~~~~~~~~~a~~~~~~~~~~----Y~~~-~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~ 105 (369)
T PRK08153 32 PFRARIGANE-SGFGPSPSVIAAMREAAAEIWK----YGDP-ENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYV 105 (369)
T ss_pred cceeEecCCC-CCCCCCHHHHHHHHHHHHHhhc----CCCC-ccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc
Confidence 3457999997 6898999999987654221111 1111 2578999999999853 45555555666666777666
Q ss_pred hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-CCHHHHHHHHhcC-CCCcEEEEEcCCCCC
Q 019931 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-CDMSHLKTLLSCC-TMRKKVVVTDSLFSM 264 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-~D~~~Le~~l~~~-~~~~~lVv~e~v~n~ 264 (334)
++ ||.|+++.+.|......+... +.+++.++. +|..+++++++.. ..++++|++.+++||
T Consensus 106 ~~--------------gd~vlv~~p~y~~~~~~~~~~----g~~~~~vp~~~~~~~~~~l~~~~~~~~~~~i~l~~P~NP 167 (369)
T PRK08153 106 EP--------------GDPVVTSLGAYPTFNYHVAGF----GGRLVTVPYRDDREDLDALLDAARRENAPLVYLANPDNP 167 (369)
T ss_pred CC--------------CCEEEECCCcchHHHHHHHHc----CCeEEEeeCCCCCCCHHHHHHHhcccCCcEEEEeCCCCC
Confidence 54 888999998888777666655 778877764 3433444443322 136788888899999
Q ss_pred CCCccCHHHHHHHHHHc--CCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 265 DGDFAPMVELVKLRRKY--GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 265 ~G~~~pL~~L~ela~k~--ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
+|.+.|.+++.++++.+ +++||+||+|... +..+. ...+....+..|++.||||+||+.| ||++++
T Consensus 168 tG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~--~~~~~--~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~ 238 (369)
T PRK08153 168 MGSWHPAADIVAFIEALPETTLLVLDEAYCET--APAGA--APPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGA 238 (369)
T ss_pred CCCCCCHHHHHHHHHhCCCCcEEEEeCchhhh--cCccc--chhhhhcCCCEEEEecchHhccCcchheeeeecC
Confidence 99999988887777654 8999999999853 32221 1111111123488999999999888 999874
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-17 Score=137.56 Aligned_cols=158 Identities=24% Similarity=0.294 Sum_probs=119.6
Q ss_pred HHHHHHHHHhHh--CCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhH-HHHHHhhhcCC
Q 019931 152 HRLLESCLADLK--KKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASII-DGIRIAERTKM 228 (334)
Q Consensus 152 ~~~LE~~La~~~--g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~-~g~~ls~~~~g 228 (334)
++++++.+++++ +.+.++++++|++|+..+++++..+ ++.|+.....|.+.. ..+... +
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~--------------~~~v~~~~~~~~~~~~~~~~~~----g 63 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGP--------------GDEVIVDANGHGSRYWVAAELA----G 63 (170)
T ss_pred HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCCC--------------CCEEEEeecccceehhhHHHhc----C
Confidence 478999999999 8888999999999999999988653 566777666776655 444444 7
Q ss_pred cEEEEeeCCCH-------HHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCc
Q 019931 229 VEVFVYKHCDM-------SHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGG 301 (334)
Q Consensus 229 ~~v~~~~~~D~-------~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~ 301 (334)
.++..++.++- +.+++... ..++++|++++++++.|...|+++|.++|+++|+++|+|++|..+......
T Consensus 64 ~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~- 140 (170)
T cd01494 64 AKPVPVPVDDAGYGGLDVAILEELKA--KPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPG- 140 (170)
T ss_pred CEEEEeccCCCCccchhhhhhhhccc--cCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccc-
Confidence 88888775421 13333222 247899999999999999999999999999999999999999987553211
Q ss_pred ccccccCCCCCccEEEecCcccccCC-ccEEeeC
Q 019931 302 GVAEQFNCERDVDICVGTLSKAAGCQ-GGFIACR 334 (334)
Q Consensus 302 g~~~~~~~~~~~Div~~SlsKa~G~~-GG~i~~~ 334 (334)
......++|+++.|++|.||+. +|+++.+
T Consensus 141 ----~~~~~~~~d~~~~s~~K~~~~~~~G~l~~~ 170 (170)
T cd01494 141 ----VLIPEGGADVVTFSLHKNLGGEGGGVVIVK 170 (170)
T ss_pred ----cccccccCCEEEEEcccccCCCceEEEEeC
Confidence 1122345799999999999874 4887753
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-17 Score=156.94 Aligned_cols=196 Identities=15% Similarity=0.060 Sum_probs=138.9
Q ss_pred eEEEeecCccCCCCCCHHHHHHHHHhcC----CCCccccccCchHHHHHHHHHHHhHh----C----CCcEEEeccHHHH
Q 019931 110 RLLLFSGNDYLGLSSHPTIAKAAARHGM----GPRGSALICGYTNYHRLLESCLADLK----K----KEDCLLCPTGFAA 177 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~v~~a~~~~g~----g~~~sr~~~G~~~~~~~LE~~La~~~----g----~e~alv~~sG~~A 177 (334)
..++++.|+ ..+..+|.+++++.+.-. ....+.. .| ..+|++.+++++ | .+++++++++.++
T Consensus 27 ~~i~l~~~~-~~~~~~~~~~~al~~~l~~~~~~~~~Y~~-~g----~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~ 100 (368)
T PRK03317 27 VPVRLNTNE-NPYPPSPALVADIAEAVAEAAAGLNRYPD-RD----AVALRADLAAYLTAQTGVGLTVENVWAANGSNEI 100 (368)
T ss_pred ceeEecCCC-CCCCCCHHHHHHHHHHHhhhhhhhccCCC-Cc----hHHHHHHHHHHhhhhccCCCChhhEEECCCHHHH
Confidence 458888886 356678999998765421 1122211 12 355777777776 3 2457777888889
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCC
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMR 252 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~ 252 (334)
+..++.+++++ ||.|++..+.+..+...++.. +.+++.++. .|++++++++++ .+
T Consensus 101 l~~~~~~~~~~--------------gd~v~v~~P~y~~~~~~~~~~----g~~~~~~~~~~~~~~d~~~l~~~~~~--~~ 160 (368)
T PRK03317 101 LQQLLQAFGGP--------------GRTALGFVPSYSMHPIIARGT----HTEWVEGPRAADFTLDVDAAVAAIAE--HR 160 (368)
T ss_pred HHHHHHHhcCC--------------CCEEEEeCCChHHHHHHHHhc----CCeeEEcccCCCCCCCHHHHHHHHhc--cC
Confidence 99999988765 787888777777666555544 677776642 278899888864 25
Q ss_pred cEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcc-cccccCCCCCccEEEecCcccccCCc---
Q 019931 253 KKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG-VAEQFNCERDVDICVGTLSKAAGCQG--- 328 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g-~~~~~~~~~~~Div~~SlsKa~G~~G--- 328 (334)
+++|++++++||+|.+.+.+++.+|++.++++||+||+|+. ++..|.. .....+..++ .|+++||||+||+.|
T Consensus 161 ~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~--~~~~~~~~~~~~~~~~~~-~i~~~SfSK~~g~~GlRi 237 (368)
T PRK03317 161 PDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAE--FRRSGTPSALTLLPEYPR-LVVSRTMSKAFAFAGGRL 237 (368)
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchh--hcccCCcCHHHHHHhCCC-EEEEEechhhhccchhhh
Confidence 67888889999999999999999999999999999999985 3333322 2222222232 488899999999888
Q ss_pred cEEeeC
Q 019931 329 GFIACR 334 (334)
Q Consensus 329 G~i~~~ 334 (334)
||++++
T Consensus 238 G~~~~~ 243 (368)
T PRK03317 238 GYLAAA 243 (368)
T ss_pred hhhhCC
Confidence 888764
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-16 Score=154.58 Aligned_cols=208 Identities=15% Similarity=0.113 Sum_probs=143.2
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC-----C-cEEEeccHHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK-----E-DCLLCPTGFAANMAV 181 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~-----e-~alv~~sG~~An~~a 181 (334)
|+++++|+.++ ..+..++.+++++.+.-.+...+....|...+.+.+.+.+.+.+|. + .+++++++.+|+..+
T Consensus 28 ~~~~i~l~~~~-p~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~ 106 (396)
T PRK09147 28 DLPPISLSIGE-PKHPTPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAF 106 (396)
T ss_pred CCCeEecCCCC-CCCCCCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHH
Confidence 48999999886 3455678888877654323333444455555555555555554452 3 466778888999999
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCCCCcE
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~~~~~ 254 (334)
+.++++++ +.+|.|++..+.+......++.. |.+++.++. .|+++|++.+.+ +++
T Consensus 107 ~~~l~~~~-----------~~gd~vlv~~P~y~~~~~~~~~~----g~~~~~vp~~~~~~~~~d~~~l~~~~~~---~~k 168 (396)
T PRK09147 107 AQTVIDRD-----------GPGPLVVCPNPFYQIYEGAALLA----GAEPYFLNCDPANNFAPDFDAVPAEVWA---RTQ 168 (396)
T ss_pred HHHHcCCC-----------CCCCEEEEcCCCccchHHHHHhc----CCEEEEeccCccccCccCHHHHHHHHhh---ccE
Confidence 98887640 12678888888777666666665 788887764 267788776653 678
Q ss_pred EEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCccc--cc---ccCCC-CCccEEEecCccccc
Q 019931 255 VVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV--AE---QFNCE-RDVDICVGTLSKAAG 325 (334)
Q Consensus 255 lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~--~~---~~~~~-~~~Div~~SlsKa~G 325 (334)
+|++.+++||+|.+.+ +++|+++|++|+++||+||+|....+....... .. ..+.. .+..|+++||||.||
T Consensus 169 ~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~ 248 (396)
T PRK09147 169 LLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSN 248 (396)
T ss_pred EEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccC
Confidence 8888999999999887 677888999999999999999976553210111 10 01111 123489999999998
Q ss_pred CCc---cEEeeC
Q 019931 326 CQG---GFIACR 334 (334)
Q Consensus 326 ~~G---G~i~~~ 334 (334)
+.| ||++++
T Consensus 249 ~~GlRiG~~~~~ 260 (396)
T PRK09147 249 VPGLRSGFVAGD 260 (396)
T ss_pred CccceeeeecCC
Confidence 877 998864
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=164.79 Aligned_cols=217 Identities=13% Similarity=0.099 Sum_probs=141.8
Q ss_pred hcc-cceeEEEeecC---ccCCCCCCHHHH--HHHHHh-cCCC--CccccccCchHHHHHHHHHHHhHh---CCCcEEEe
Q 019931 104 FAR-QFKRLLLFSGN---DYLGLSSHPTIA--KAAARH-GMGP--RGSALICGYTNYHRLLESCLADLK---KKEDCLLC 171 (334)
Q Consensus 104 ~~~-~g~~~l~f~sn---~yLgl~~~p~v~--~a~~~~-g~g~--~~sr~~~G~~~~~~~LE~~La~~~---g~e~alv~ 171 (334)
+|. +|++||||.+. ..||. +||+|. +|+.+. .... ..+.. .-.++...++.++|+++. +.++++++
T Consensus 32 ~D~~dG~~ylD~~~g~~~~~lGh-~~p~v~~~~ai~~q~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~v~f~ 109 (431)
T TIGR03251 32 VDARDGRRYLDMFSFFASMALGM-NHPALVDDLAFRARLGAAAVNKPSNS-DVYTVAMARFVDTFARVLGDPALPHLFFI 109 (431)
T ss_pred EECCCCCChhhcccChhhcCCCC-CChhhhHHHHHHHHHHHhhhcccccC-CCCCHHHHHHHHHHHHhcCCCCcCEEEEe
Confidence 464 78999999774 34676 588888 766443 2211 00111 112455577778888875 24678888
Q ss_pred ccHHHHHHHHHHHHhhhhhhccCC-----CccCCCCCeEEEEcCCCchhhHHHHHHhhhc-C--C-cEE-------E---
Q 019931 172 PTGFAANMAVIVAVGNIASLLAGD-----EKSFKDEKIAIFSDALNHASIIDGIRIAERT-K--M-VEV-------F--- 232 (334)
Q Consensus 172 ~sG~~An~~ai~al~~~~~~~~~~-----~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~-~--g-~~v-------~--- 232 (334)
+||++||+++++....- +.. ..+.+++..+|.....+|+.....+.++... . . ... .
T Consensus 110 ~sGsEAve~AlklAr~~----t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~ 185 (431)
T TIGR03251 110 EGGALAVENALKTAFDW----KSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKL 185 (431)
T ss_pred CCcHHHHHHHHHHHHHH----hhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcc
Confidence 99999999999965321 100 0011112456778888999876666554210 0 0 000 0
Q ss_pred EeeC-------------CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCccccc
Q 019931 233 VYKH-------------CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFV 295 (334)
Q Consensus 233 ~~~~-------------~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv 295 (334)
+++. ++++++++.+.....+...|++|++.+..|.+.| |++|+++|++||++||+||+|+ |
T Consensus 186 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G- 263 (431)
T TIGR03251 186 TFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQT-G- 263 (431)
T ss_pred cCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchh-c-
Confidence 0010 1345566666544457889999999999997754 9999999999999999999999 5
Q ss_pred ccCCCccc-ccccCCCCCccEEEecCcccccCCccEEee
Q 019931 296 CGKNGGGV-AEQFNCERDVDICVGTLSKAAGCQGGFIAC 333 (334)
Q Consensus 296 ~G~~G~g~-~~~~~~~~~~Div~~SlsKa~G~~GG~i~~ 333 (334)
+|++|.++ .+++++.| ||+ +++|++ ..||++++
T Consensus 264 ~GrtG~~~a~~~~gv~P--Di~--~~gK~~-~~~g~~~~ 297 (431)
T TIGR03251 264 VGLTGTAWAYQQLGVQP--DIV--AFGKKT-QVCGIMAG 297 (431)
T ss_pred cCccchHHHHHhcCCCC--CEE--EecccC-ccceEEec
Confidence 68888875 46888877 566 799998 45666654
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-16 Score=153.75 Aligned_cols=205 Identities=16% Similarity=0.098 Sum_probs=139.7
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHH-hcC-CCCccccccCchHHHHHHHHHHHhHhCC----C-cEEEeccHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAAR-HGM-GPRGSALICGYTNYHRLLESCLADLKKK----E-DCLLCPTGFAANMAV 181 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~-~g~-g~~~sr~~~G~~~~~~~LE~~La~~~g~----e-~alv~~sG~~An~~a 181 (334)
..+++|+.++ .....++.+.+++.+ ... ....+....|...+.+.+.+.+.+..|. + ++++++++.+|+..+
T Consensus 33 ~~~~~l~~g~-p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~ 111 (403)
T PRK08636 33 EDIIDFSMGN-PDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHL 111 (403)
T ss_pred CCEEEcCCcC-CCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHH
Confidence 6788998875 334345656665543 222 1233444455555555555555554452 4 477778889999999
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHH----HHHHHHhcCC
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMS----HLKTLLSCCT 250 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~----~Le~~l~~~~ 250 (334)
+.+++.+ ||.|+++.+.+..+...+... |++++.++. .|++ .+++++++..
T Consensus 112 ~~~l~~~--------------gd~Vlv~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~ 173 (403)
T PRK08636 112 VQAITNP--------------GDVAIVPDPAYPIHSQAFILA----GGNVHKMPLEYNEDFELDEDQFFENLEKALRESS 173 (403)
T ss_pred HHHhCCC--------------CCEEEEcCCCCcchHHHHHhc----CCEEEEEeccccccCccChhhhhhHHHHHHhhcc
Confidence 9988865 788999888888877777666 788877753 1444 4566665544
Q ss_pred CCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC--CCCccEEEecCccccc
Q 019931 251 MRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC--ERDVDICVGTLSKAAG 325 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~--~~~~Div~~SlsKa~G 325 (334)
.++++|++++++||+|.+.+ +++|+++|++|+++||+||+|....++. ........+ .++..|.++||||+||
T Consensus 174 ~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~~ 251 (403)
T PRK08636 174 PKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDG--YKTPSILEVEGAKDVAVESYTLSKSYN 251 (403)
T ss_pred CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCC--CCCCChhcCCCccccEEEEEecccccC
Confidence 57889999999999999988 5678889999999999999999765532 111111112 1234466899999998
Q ss_pred CCc---cEEeeC
Q 019931 326 CQG---GFIACR 334 (334)
Q Consensus 326 ~~G---G~i~~~ 334 (334)
..| ||++++
T Consensus 252 ~~GlRiG~iv~~ 263 (403)
T PRK08636 252 MAGWRVGFVVGN 263 (403)
T ss_pred CccceeeeeeCC
Confidence 766 888764
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-16 Score=154.97 Aligned_cols=201 Identities=15% Similarity=0.103 Sum_probs=139.1
Q ss_pred cceeEEEeecCcc---CCCCCCHHHHHHHHHhcCC--CCccccccCchHHHHHHHHHHHhHhC--------CCcEEEecc
Q 019931 107 QFKRLLLFSGNDY---LGLSSHPTIAKAAARHGMG--PRGSALICGYTNYHRLLESCLADLKK--------KEDCLLCPT 173 (334)
Q Consensus 107 ~g~~~l~f~sn~y---Lgl~~~p~v~~a~~~~g~g--~~~sr~~~G~~~~~~~LE~~La~~~g--------~e~alv~~s 173 (334)
.|+.+++|+..+. ..+..++.+++++.+.-.. ...+....|. .+|+++++++++ .++++++++
T Consensus 29 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~----~~lr~~ia~~~~~~~g~~~~~~~i~~t~G 104 (409)
T PLN02656 29 NGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGL----PQARRAIAEYLSRDLPYKLSLDDVFITSG 104 (409)
T ss_pred cCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC----HHHHHHHHHHHHHhcCCCCCcccEEEeCC
Confidence 4589999987663 2477788888877653221 1222223344 445555666542 256788888
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHH
Q 019931 174 GFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLL 246 (334)
Q Consensus 174 G~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l 246 (334)
+++|+..++.+++++ ||.|++..+.|.......... +++++.++. .|+++|++++
T Consensus 105 ~~~al~~~~~~l~~~--------------gd~Vlv~~p~y~~~~~~~~~~----g~~~~~i~~~~~~~~~~d~~~l~~~~ 166 (409)
T PLN02656 105 CTQAIDVALSMLARP--------------GANILLPRPGFPIYELCAAFR----HLEVRYVDLLPEKGWEVDLDAVEALA 166 (409)
T ss_pred hHHHHHHHHHHHhCC--------------CCeEEEeCCCCCcHHHHHHHc----CCEEEEEeCCCcCCCCCCHHHHHHHh
Confidence 999999999888764 788888888877665555554 777777763 2678888877
Q ss_pred hcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccc
Q 019931 247 SCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKA 323 (334)
Q Consensus 247 ~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa 323 (334)
++ ++++|++.+++||+|.+.+ +++|+++|++||++||+||+|...++...-.-....+.... .-|+++||||+
T Consensus 167 ~~---~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~vi~~~SfSK~ 242 (409)
T PLN02656 167 DQ---NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIV-PVLTLGSLSKR 242 (409)
T ss_pred cc---CceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccC-cEEEEcccchh
Confidence 54 6788888889999998864 78899999999999999999996555321100001111111 24889999999
Q ss_pred ccCCc---cEEee
Q 019931 324 AGCQG---GFIAC 333 (334)
Q Consensus 324 ~G~~G---G~i~~ 333 (334)
|+..| ||+++
T Consensus 243 f~~pGlRiG~~i~ 255 (409)
T PLN02656 243 WIVPGWRLGWFVT 255 (409)
T ss_pred ccCcceeEEEEEE
Confidence 98877 88876
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-16 Score=152.62 Aligned_cols=199 Identities=13% Similarity=0.118 Sum_probs=140.7
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCC-CCccccccCchHHHHHHHHHHHhHh----C----CC-cEEEeccHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMG-PRGSALICGYTNYHRLLESCLADLK----K----KE-DCLLCPTGFAAN 178 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g-~~~sr~~~G~~~~~~~LE~~La~~~----g----~e-~alv~~sG~~An 178 (334)
..+++|..++ ..+..++.+++++.+.-.. ...+....|. .+|++++++++ | .+ ++++++++++|+
T Consensus 28 ~~~i~l~~~~-p~~~~~~~~~~a~~~~~~~~~~~Y~~~~g~----~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al 102 (387)
T PRK07683 28 DNLISLTIGQ-PDFPTPSHVKEAAKRAITENYTSYTHNAGL----LELRKAACNFVKDKYDLHYSPESEIIVTIGASEAI 102 (387)
T ss_pred CCeEEecCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCC----HHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHH
Confidence 4578888875 3455577888877654221 1122222333 55666666665 3 23 577778889999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCC
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMR 252 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~ 252 (334)
..++.+++.+ ||.|+++.+.+......++.. |++++.++.+ |.+++++.+++ +
T Consensus 103 ~~~~~~l~~~--------------gd~Vl~~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~l~~~~~~---~ 161 (387)
T PRK07683 103 DIAFRTILEP--------------GTEVILPAPIYPGYEPIIRLC----GAKPVFIDTRSTGFRLTAEALENAITE---K 161 (387)
T ss_pred HHHHHHhCCC--------------CCEEEEcCCCccchHHHHHHc----CCEEEEeecCcccCCCCHHHHHHhcCc---C
Confidence 9998887654 788888888776666666655 7888887643 56778887754 6
Q ss_pred cEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc-
Q 019931 253 KKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG- 328 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G- 328 (334)
+++|++.+++||+|.+.+ +++|+++|+++|+++|+||+|....+++....+....+. ++..|+++||||.||..|
T Consensus 162 ~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~s~SK~~~~pGl 240 (387)
T PRK07683 162 TRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEM-REKTIVINGLSKSHSMTGW 240 (387)
T ss_pred ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCC-cCCeEEEeeccccccCccc
Confidence 788899999999999876 788899999999999999999976665433333322121 233588999999999878
Q ss_pred --cEEeeC
Q 019931 329 --GFIACR 334 (334)
Q Consensus 329 --G~i~~~ 334 (334)
||++++
T Consensus 241 RiG~i~~~ 248 (387)
T PRK07683 241 RIGFLFAP 248 (387)
T ss_pred eeEEEEcC
Confidence 998864
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-16 Score=154.94 Aligned_cols=199 Identities=15% Similarity=0.141 Sum_probs=137.4
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC---CCC---ccccccCchHHHHHHHHHHHhHhCCC---cEEEeccHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM---GPR---GSALICGYTNYHRLLESCLADLKKKE---DCLLCPTGFAANM 179 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~---g~~---~sr~~~G~~~~~~~LE~~La~~~g~e---~alv~~sG~~An~ 179 (334)
.-|+|-++. |+ .++.+++++.+|-. +.. .+....-.....+++++.+++++|.+ .+++++++++++.
T Consensus 17 ~iyld~a~~---~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~ 92 (398)
T TIGR03392 17 TVYLDSAAT---AL-KPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESIN 92 (398)
T ss_pred eEEeeCccc---cC-CCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHH
Confidence 456665444 33 46778887766521 111 11110011245678999999999963 3566688889988
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcE
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~ 254 (334)
.++.++.... .++||.|++....|.+....+.......|++++.++.+ |+++|++++++ +++
T Consensus 93 ~~~~~~~~~~----------~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~---~t~ 159 (398)
T TIGR03392 93 LVAQSYARPR----------LQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTP---RTR 159 (398)
T ss_pred HHHHHhhhcc----------CCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhcc---Cce
Confidence 8888764210 02478899888888875433322112237888887642 78888888864 789
Q ss_pred EEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccccCCc-cEEe
Q 019931 255 VVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAAGCQG-GFIA 332 (334)
Q Consensus 255 lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~G~~G-G~i~ 332 (334)
+|++.+++|++|.+.|+++|.++|+++|+++++|++|+.|.+- ..+ ..++|+++.|++|.+|+.| |++.
T Consensus 160 lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~gp~G~G~l~ 230 (398)
T TIGR03392 160 ILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGP---------PDVQALDIDFYAFSGHKLYGPTGIGVLY 230 (398)
T ss_pred EEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCC---------CChhhcCCCEEEEecccccCCCceEEEE
Confidence 9999999999999999999999999999999999999865321 111 1357899999999988876 7765
Q ss_pred e
Q 019931 333 C 333 (334)
Q Consensus 333 ~ 333 (334)
.
T Consensus 231 ~ 231 (398)
T TIGR03392 231 G 231 (398)
T ss_pred E
Confidence 4
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-16 Score=154.00 Aligned_cols=198 Identities=16% Similarity=0.130 Sum_probs=136.1
Q ss_pred eEEEeecCccCCCCCCHHHHHHHHHhcC---CCC--ccccc-cCchHHHHHHHHHHHhHhCCC---cEEEeccHHHHHHH
Q 019931 110 RLLLFSGNDYLGLSSHPTIAKAAARHGM---GPR--GSALI-CGYTNYHRLLESCLADLKKKE---DCLLCPTGFAANMA 180 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~v~~a~~~~g~---g~~--~sr~~-~G~~~~~~~LE~~La~~~g~e---~alv~~sG~~An~~ 180 (334)
-|+|.++. |. .++.+.+++.++-. +.. +.... .-.....+++++.+++++|.+ .+++++++++++..
T Consensus 20 ~yld~~~~---~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~ 95 (403)
T TIGR01979 20 VYLDSAAT---SQ-KPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINL 95 (403)
T ss_pred EEEeCccc---cC-CCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHH
Confidence 45554443 32 46778887765421 111 11111 111245678999999999965 46666777888777
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEE
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKV 255 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~l 255 (334)
++.++... ..+++|.|++....|.+....+.......|.+++.++. .|++++++.+.+ ++++
T Consensus 96 ~~~~~~~~----------~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~---~~~l 162 (403)
T TIGR01979 96 VAYSWGDS----------NLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTE---KTKL 162 (403)
T ss_pred HHHHhhhh----------cCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhcc---CCeE
Confidence 77765321 00247889988888888654433221122777777764 278888888864 7899
Q ss_pred EEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccccCCc-cEEee
Q 019931 256 VVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAAGCQG-GFIAC 333 (334)
Q Consensus 256 Vv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~G~~G-G~i~~ 333 (334)
|++.+++|++|.+.|+++|.++|+++|+++++|++|+.|... ..+ ..++|+++.|++|.+|+.| |++..
T Consensus 163 v~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~~gp~G~g~l~~ 233 (403)
T TIGR01979 163 VAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMP---------VDVQALDCDFYVFSGHKMYGPTGIGVLYG 233 (403)
T ss_pred EEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccc---------cCccccCCCEEEEecccccCCCCceEEEE
Confidence 999999999999999999999999999999999999876321 111 1357899999999999877 77754
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-16 Score=152.26 Aligned_cols=202 Identities=16% Similarity=0.140 Sum_probs=137.8
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhc-CCC-CccccccCchHHHHHHHHHHHhHhCC----CcEEEeccHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHG-MGP-RGSALICGYTNYHRLLESCLADLKKK----EDCLLCPTGFAANMAVI 182 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~-~~sr~~~G~~~~~~~LE~~La~~~g~----e~alv~~sG~~An~~ai 182 (334)
+.+++|.+++ ..+..++.+.+++.+.. ... ..+....|..++.+.+.+.+.+..|. +++++++++++|+..++
T Consensus 29 ~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~ 107 (386)
T PRK07550 29 GPLIDLSQAV-PGYPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAM 107 (386)
T ss_pred CCeEEeCCCC-CCCCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHH
Confidence 6789999887 34555777888766532 211 12223456655556666666555452 45566666688988888
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCCcEE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMRKKV 255 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~~~l 255 (334)
.+++.+ ||.|++..+.+......++.. |.+++.++.+ |.++|++++++ ++++
T Consensus 108 ~~l~~~--------------gd~Vlv~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~~~~~l~~~~~~---~~~~ 166 (386)
T PRK07550 108 VTLAGA--------------GDEVILPLPWYFNHKMWLDML----GIRPVYLPCDEGPGLLPDPAAAEALITP---RTRA 166 (386)
T ss_pred HHhcCC--------------CCEEEEcCCCCcchHHHHHhc----CCEEEEEecCCCcCCCCCHHHHHHHhcc---cCcE
Confidence 887754 788998888877666555555 7888877742 67888888864 5777
Q ss_pred EEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcc--cccccCCCCCccEEEecCcccccCCc--
Q 019931 256 VVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG--VAEQFNCERDVDICVGTLSKAAGCQG-- 328 (334)
Q Consensus 256 Vv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g--~~~~~~~~~~~Div~~SlsKa~G~~G-- 328 (334)
|++.+++||+|.+.+ +++|+++|++||+++|+||+|+....+. +.. .....+ .....|++.||||++|..|
T Consensus 167 v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~-~~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~R 244 (386)
T PRK07550 167 IALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGG-GAPHDLFADPD-WDDTLVHLYSFSKSYALTGHR 244 (386)
T ss_pred EEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCC-CCCcchhhCCC-ccccEEEEecchhhccCcccc
Confidence 777789999998887 7789999999999999999998543221 111 111111 1122478999999998655
Q ss_pred -cEEeeC
Q 019931 329 -GFIACR 334 (334)
Q Consensus 329 -G~i~~~ 334 (334)
||++++
T Consensus 245 iG~i~~~ 251 (386)
T PRK07550 245 VGAVVAS 251 (386)
T ss_pred eEeeecC
Confidence 888764
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-16 Score=154.82 Aligned_cols=205 Identities=15% Similarity=0.122 Sum_probs=141.5
Q ss_pred cceeEEEeecCccC---CCCCCHHHHHHHHHhcC-C-CCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHH
Q 019931 107 QFKRLLLFSGNDYL---GLSSHPTIAKAAARHGM-G-PRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAA 177 (334)
Q Consensus 107 ~g~~~l~f~sn~yL---gl~~~p~v~~a~~~~g~-g-~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~A 177 (334)
.++.+|+|+-.++- .+..+|.+++++.+.-. + ...+....|...+.+.+.+.+.+..| .+++++++++.++
T Consensus 30 ~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~a 109 (409)
T PLN00143 30 DHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHA 109 (409)
T ss_pred CCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHH
Confidence 34889999987753 37788888887765422 1 12233344554444444444433323 3567888888999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCC
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCT 250 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~ 250 (334)
+..++.+++.+ ||.|++..+.+..+...+... +.+++.++. .|+++|++++++
T Consensus 110 l~~~~~~l~~~--------------gd~v~v~~P~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~~~~-- 169 (409)
T PLN00143 110 AEIIIKVLARP--------------EANILLPRPGFPDVETYAIFH----HLEIRHFDLLPEKGWEVDLDAVEAIADE-- 169 (409)
T ss_pred HHHHHHHHcCC--------------CCEEEEcCCCCcCHHHHHHHc----CCEEEEEeccCCCCCcCCHHHHHHhccc--
Confidence 99999988765 788888888877776666665 778777753 278888887754
Q ss_pred CCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCC
Q 019931 251 MRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQ 327 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~ 327 (334)
+++++++.+++||+|.+.+ +++|+++|++|+++||+||+|...+++..-......+.... .-|+++||||.|++.
T Consensus 170 -~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~-~vi~~~SfSK~f~~p 247 (409)
T PLN00143 170 -NTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIV-PVITLGSISKRWMIP 247 (409)
T ss_pred -CCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccC-cEEEEccchhhcCCC
Confidence 5777778889999999988 67788899999999999999997555321001111111111 248899999999887
Q ss_pred c---cEEee
Q 019931 328 G---GFIAC 333 (334)
Q Consensus 328 G---G~i~~ 333 (334)
| ||+++
T Consensus 248 GlRvG~~v~ 256 (409)
T PLN00143 248 GWGLGWLVT 256 (409)
T ss_pred ccceEEEEe
Confidence 7 88876
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-16 Score=153.54 Aligned_cols=205 Identities=16% Similarity=0.120 Sum_probs=140.3
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhC------CC-cEEEeccHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKK------KE-DCLLCPTGFAANMA 180 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g------~e-~alv~~sG~~An~~ 180 (334)
|+++++|..|+ -.+..++.+++++++.......+....|..++.+.+.+.+.+.+| .+ .+++++++.+|+..
T Consensus 27 ~~~~i~l~~~~-p~~~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~ 105 (393)
T TIGR03538 27 SKPPIALSIGE-PKHPTPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFA 105 (393)
T ss_pred CCCeEEecCCC-CCCCCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHH
Confidence 48899999987 356668889998876533333344445554554445544444323 22 35666777889999
Q ss_pred HHHHHhhhhhhccCCCccCCCCCe--EEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCC
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKI--AIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTM 251 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd--~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~ 251 (334)
++.+++++ || .|+++.+.+......++.. |.+++.++.. |++++++++.+
T Consensus 106 ~~~~l~~~--------------gd~~~vlv~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~~~~--- 164 (393)
T TIGR03538 106 FAQAVINP--------------GQAPLVVMPNPFYQIYEGAALLA----GAEPYFLNCTAENGFLPDFDAVPESVWR--- 164 (393)
T ss_pred HHHHHcCC--------------CCcceEEecCCCCcchHHHHHhc----CCeEEEeeccccCCCCCCHHHHHHHHhh---
Confidence 99888765 44 4788887777666555555 7888877642 67788877754
Q ss_pred CcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcc--cccc---cCC-CCCccEEEecCcc
Q 019931 252 RKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG--VAEQ---FNC-ERDVDICVGTLSK 322 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g--~~~~---~~~-~~~~Div~~SlsK 322 (334)
++++|++.+++||+|.+.+ +++|+++|++|+++||+||+|....+...... .... .+. ..+.-|++.||||
T Consensus 165 ~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK 244 (393)
T TIGR03538 165 RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSK 244 (393)
T ss_pred cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchh
Confidence 6788888899999999988 77889999999999999999986544321111 1111 111 1112389999999
Q ss_pred cccCCc---cEEeeC
Q 019931 323 AAGCQG---GFIACR 334 (334)
Q Consensus 323 a~G~~G---G~i~~~ 334 (334)
.|++.| ||++++
T Consensus 245 ~~~~~GlRvG~~i~~ 259 (393)
T TIGR03538 245 RSNLPGLRSGFVAGD 259 (393)
T ss_pred hcCCcccceEEEecC
Confidence 998877 998864
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-17 Score=156.29 Aligned_cols=158 Identities=22% Similarity=0.200 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCc
Q 019931 150 NYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMV 229 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~ 229 (334)
|....||+.++++.|.+++++|+||+.|...++..|+.. .+.+|..+..+... ..-++......+.
T Consensus 77 Pt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~~~-------------g~~iV~~~~~Y~gT-~~~l~~~~~~~gi 142 (409)
T KOG0053|consen 77 PTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLLPA-------------GDHIVATGDVYGGT-LRILRKFLPKFGG 142 (409)
T ss_pred CchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhcCC-------------CCcEEEeCCCcccH-HHHHHHHHHHhCc
Confidence 556889999999999999999999999999999988764 14455555555444 3333322223477
Q ss_pred EEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC
Q 019931 230 EVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC 309 (334)
Q Consensus 230 ~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~ 309 (334)
....++..|++.+++.+++ ++++|++|+|.||...+.|+++|+++|+++|++++||+..+.+++ ..++
T Consensus 143 e~~~vd~~~~~~~~~~i~~---~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~---------~~pL 210 (409)
T KOG0053|consen 143 EGDFVDVDDLKKILKAIKE---NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN---------QDPL 210 (409)
T ss_pred eeeeechhhHHHHHHhhcc---CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc---------cChh
Confidence 7777877788888888875 799999999999999999999999999999999999998876633 1233
Q ss_pred CCCccEEEecCcccccC----CccEEee
Q 019931 310 ERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 310 ~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
.-++||++.|++|.||+ .||.++.
T Consensus 211 ~lGADIV~hSaTKyi~Ghsdvi~G~iv~ 238 (409)
T KOG0053|consen 211 PLGADIVVHSATKYIGGHSDVIGGSVVL 238 (409)
T ss_pred hcCCCEEEEeeeeeecCCcceeeeEEec
Confidence 45689999999999987 4677664
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-16 Score=151.80 Aligned_cols=206 Identities=17% Similarity=0.153 Sum_probs=136.1
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHH-hcCC-CCccccccCchHHHHHHHHHHHhHhCC----C-cEEEeccHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAAR-HGMG-PRGSALICGYTNYHRLLESCLADLKKK----E-DCLLCPTGFAANMA 180 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~-~g~g-~~~sr~~~G~~~~~~~LE~~La~~~g~----e-~alv~~sG~~An~~ 180 (334)
|+++++|+.++. ....+|.+.+++.+ ...+ ...+....|..++.+.+.+.+.+.+|. + .+++++++.+++..
T Consensus 28 ~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~ 106 (395)
T PRK08175 28 GEDIIDFSMGNP-DGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAH 106 (395)
T ss_pred CCCeEEcCCCCC-CCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHH
Confidence 478899988763 33446666665433 2221 122223334434444444444333342 3 35566666678777
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC----CHHHHHHHHhcCCCCcEEE
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC----DMSHLKTLLSCCTMRKKVV 256 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~----D~~~Le~~l~~~~~~~~lV 256 (334)
++.+++.+ ||.|++..+.+......++.. |++++.++.. +.++|+++++...+++++|
T Consensus 107 ~~~~~~~~--------------gd~Vlv~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~v 168 (395)
T PRK08175 107 LMLATLDH--------------GDTVLVPNPSYPIHIYGAVIA----GAQVRSVPLVEGVDFFNELERAIRESYPKPKMM 168 (395)
T ss_pred HHHHhCCC--------------CCEEEEcCCCCcchHHHHHHc----CCeEEEEecccCCCcHHHHHHHHhhccCCceEE
Confidence 77777654 788998888888776666655 7888777643 5788998887543468888
Q ss_pred EEcCCCCCCCCccCH---HHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC--CCccEEEecCcccccCCc---
Q 019931 257 VTDSLFSMDGDFAPM---VELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE--RDVDICVGTLSKAAGCQG--- 328 (334)
Q Consensus 257 v~e~v~n~~G~~~pL---~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~--~~~Div~~SlsKa~G~~G--- 328 (334)
++++++||+|.+.+. ++|.++|++||+++|+||+|....++ +........+. .+..|++.||||.||..|
T Consensus 169 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~--~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRi 246 (395)
T PRK08175 169 ILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYD--GWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRI 246 (395)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccC--CCCCcchhcCCCcccCEEEEeeccccccCcchhh
Confidence 888999999999886 68999999999999999999865553 21111111111 234477899999998766
Q ss_pred cEEeeC
Q 019931 329 GFIACR 334 (334)
Q Consensus 329 G~i~~~ 334 (334)
||++++
T Consensus 247 G~~~~~ 252 (395)
T PRK08175 247 GFMVGN 252 (395)
T ss_pred eeeeCC
Confidence 888764
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-16 Score=153.64 Aligned_cols=199 Identities=16% Similarity=0.107 Sum_probs=137.6
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC---C---CCccccccCchHHHHHHHHHHHhHhCC-C--cEEEeccHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM---G---PRGSALICGYTNYHRLLESCLADLKKK-E--DCLLCPTGFAANM 179 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~---g---~~~sr~~~G~~~~~~~LE~~La~~~g~-e--~alv~~sG~~An~ 179 (334)
.-|+|.++.. . .++.|++++.+|-. + .+.+....-.....+++++++++++|. + .+++++++++++.
T Consensus 24 ~iYld~a~~~---~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~ 99 (406)
T PRK09295 24 LAYLDSAASA---Q-KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGIN 99 (406)
T ss_pred eEEEeCcccc---c-CCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHH
Confidence 4677766654 2 46778887655431 1 111111111235568899999999986 2 4556677788888
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcE
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~ 254 (334)
.++.++... . ..+||.|++....|.+....+.......+++++.++.+ |+++|++++++ +++
T Consensus 100 ~~~~~~~~~--~--------~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~---~t~ 166 (406)
T PRK09295 100 LVANSWGNS--N--------VRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDE---RTR 166 (406)
T ss_pred HHHHHhhhh--c--------CCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCC---CcE
Confidence 877765211 0 02478888888888876544433222237888877643 78888888864 789
Q ss_pred EEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCc-cEEe
Q 019931 255 VVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQG-GFIA 332 (334)
Q Consensus 255 lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~G-G~i~ 332 (334)
+|++.+++|++|.+.|+++|.++|+++|+++++|++|+.|... .++. .++|+++.|++|.+|+.| |++.
T Consensus 167 lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~---------~~~~~~~~D~~~~s~~K~~gp~G~G~l~ 237 (406)
T PRK09295 167 LLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHP---------VDVQALDCDFYVFSGHKLYGPTGIGILY 237 (406)
T ss_pred EEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccc---------cCchhcCCCEEEeehhhccCCCCcEEEE
Confidence 9999999999999999999999999999999999999876321 1222 357999999999888876 6765
Q ss_pred e
Q 019931 333 C 333 (334)
Q Consensus 333 ~ 333 (334)
.
T Consensus 238 ~ 238 (406)
T PRK09295 238 V 238 (406)
T ss_pred E
Confidence 4
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-16 Score=152.05 Aligned_cols=199 Identities=14% Similarity=0.122 Sum_probs=137.8
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCC------CccccccCchHHHHHHHHHHHhHhCC-C--cEEEeccHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGP------RGSALICGYTNYHRLLESCLADLKKK-E--DCLLCPTGFAANM 179 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~------~~sr~~~G~~~~~~~LE~~La~~~g~-e--~alv~~sG~~An~ 179 (334)
.-|+|-++. +. .++.+.+++++|-... +.+..........+++++++++++|. + .+++++++++++.
T Consensus 20 ~~yld~a~~---~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~ 95 (401)
T PRK10874 20 GVYLDSAAT---AL-KPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESIN 95 (401)
T ss_pred eEEEeCCcc---cC-CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHH
Confidence 445554443 33 4677888776553211 11111111235568899999999997 3 3556677888888
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcE
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~ 254 (334)
.++.++.... + .+||.|++....|.+....+.......|++++.++. .|++++++++++ +++
T Consensus 96 ~~~~~~~~~~--~--------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~---~t~ 162 (401)
T PRK10874 96 LVAQSYARPR--L--------QPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITP---RTR 162 (401)
T ss_pred HHHHHhhhcc--C--------CCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCc---CcE
Confidence 8888774210 0 147888888889888544433221223788877764 368888888854 789
Q ss_pred EEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccccCCc-cEEe
Q 019931 255 VVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAAGCQG-GFIA 332 (334)
Q Consensus 255 lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~G~~G-G~i~ 332 (334)
+|++.+++|++|.+.|+++|.++|+++|+++++|++|+.|.+. ..+ ..++|+++.|++|.+|+.| |++.
T Consensus 163 lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~~gp~G~G~l~ 233 (401)
T PRK10874 163 ILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFP---------ADVQALDIDFYAFSGHKLYGPTGIGVLY 233 (401)
T ss_pred EEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCccccccc---------CCchhcCCCEEEEecccccCCCccEEEE
Confidence 9999999999999999999999999999999999999865431 111 1347899999999988876 7765
Q ss_pred e
Q 019931 333 C 333 (334)
Q Consensus 333 ~ 333 (334)
.
T Consensus 234 ~ 234 (401)
T PRK10874 234 G 234 (401)
T ss_pred E
Confidence 4
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-16 Score=149.89 Aligned_cols=204 Identities=20% Similarity=0.158 Sum_probs=141.0
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVA 184 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~a 184 (334)
++.+++|+.+ .+|.+.+++.++. ...+......|....++++++.|++++|.+ ..+++++|++++..++.+
T Consensus 22 ~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~ 95 (373)
T TIGR03812 22 GRILGSMCTN------PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRA 95 (373)
T ss_pred CcEEEEEeCC------chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHH
Confidence 4777788876 5777777666552 111222334566788899999999999975 458889999999988877
Q ss_pred HhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCc-EEEEE
Q 019931 185 VGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRK-KVVVT 258 (334)
Q Consensus 185 l~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~-~lVv~ 258 (334)
+.... . ...++|.|++....|.++...++.. |.+++.+++ .|+++|++++++ ++ +++++
T Consensus 96 ~~~~~---~-----~~~~g~~vl~~~~~h~~~~~~~~~~----G~~~~~v~~~~~~~~d~~~l~~~l~~---~~~~vv~~ 160 (373)
T TIGR03812 96 AKNLA---R-----EEKRTPNIIVPESAHFSFEKAAEML----GLELRYAPLDEDYTVDVKDVEDLIDD---NTIGIVGI 160 (373)
T ss_pred HHHHH---h-----ccCCCcEEEECCcchHHHHHHHHHc----CCeEEEEeeCCCCCcCHHHHHHHHhh---CcEEEEEE
Confidence 65310 0 0013678888889999987777655 788888875 389999998865 34 45555
Q ss_pred cCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCC-CCCccEEEecCcccc-cC--CccEEee
Q 019931 259 DSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNC-ERDVDICVGTLSKAA-GC--QGGFIAC 333 (334)
Q Consensus 259 e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~-~~~~Div~~SlsKa~-G~--~GG~i~~ 333 (334)
. +.|++|.+.|+++|.++|+++|+++++|+||+.++++-...|.. ....+ ...+|.+..|.+|.. ++ .||++++
T Consensus 161 ~-~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~ 239 (373)
T TIGR03812 161 A-GTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFR 239 (373)
T ss_pred C-CCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEe
Confidence 5 57899999999999999999999999999998665321110110 00111 135688888999943 22 4556654
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=154.33 Aligned_cols=197 Identities=16% Similarity=0.135 Sum_probs=134.1
Q ss_pred eEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHhh
Q 019931 110 RLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVGN 187 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~~ 187 (334)
.+++|.+|. ..+..+|.+++++.++-.....+. ..-..+|++.++++++.+ +++++++.++++..++.++++
T Consensus 23 ~~i~l~~~~-~~~~~~~~~~~a~~~~~~~~~~y~-----~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~~ 96 (352)
T PRK03321 23 GAIKLSSNE-TPFGPLPSVRAAIARAAAGVNRYP-----DMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAG 96 (352)
T ss_pred cceeccCCC-CCCCCCHHHHHHHHHHHHhcCcCC-----CCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhcC
Confidence 478888885 346567889888766432211111 123578999999999864 355545455566666666655
Q ss_pred hhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCC
Q 019931 188 IASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLF 262 (334)
Q Consensus 188 ~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~ 262 (334)
+ ||.|+++.+.+......++.. |.+++.++.+ |++++++++++ ++++|++++++
T Consensus 97 ~--------------gd~Vli~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p~ 155 (352)
T PRK03321 97 P--------------GDEVIFAWRSFEAYPILVQVA----GATPVQVPLTPDHTHDLDAMAAAITD---RTRLIFVCNPN 155 (352)
T ss_pred C--------------CCEEEeCCCCHHHHHHHHHHc----CCEEEEccCCCCCCCCHHHHHHhhcc---CCCEEEEeCCC
Confidence 3 788887766554444444444 7788777653 67888887754 67888888999
Q ss_pred CCCCCccCHHHHHHHHHH--cCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 263 SMDGDFAPMVELVKLRRK--YGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 263 n~~G~~~pL~~L~ela~k--~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
||+|.+.|.++|.++|++ +++++|+||+|....++.............++ .|+++||||+||+.| ||++++
T Consensus 156 NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-vi~~~S~SK~~g~~GlRiG~~v~~ 231 (352)
T PRK03321 156 NPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPN-VVVLRTFSKAYGLAGLRVGYAVGH 231 (352)
T ss_pred CCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCC-EEEEecchHHhhhHHHhhhhhcCC
Confidence 999999999999999997 59999999999865443211111111111223 488999999999776 888764
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-16 Score=156.50 Aligned_cols=199 Identities=16% Similarity=0.136 Sum_probs=139.5
Q ss_pred ceeEEEeecCc--cCC-CCCCHHHHHHHHHhc-CCC-CccccccCchHHHHHHHHHHHhHhC--------CCcEEEeccH
Q 019931 108 FKRLLLFSGND--YLG-LSSHPTIAKAAARHG-MGP-RGSALICGYTNYHRLLESCLADLKK--------KEDCLLCPTG 174 (334)
Q Consensus 108 g~~~l~f~sn~--yLg-l~~~p~v~~a~~~~g-~g~-~~sr~~~G~~~~~~~LE~~La~~~g--------~e~alv~~sG 174 (334)
++.+++|...| +.. +..++.+.+++.+.- .+. ..+....| ..+|++.+|++++ .+++++++++
T Consensus 65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G----~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~ 140 (462)
T PLN02187 65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAG----ILPARRAVADYMNRDLPHKLTPEDIFLTAGC 140 (462)
T ss_pred CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCC----hHHHHHHHHHHHHHhcCCCCCcccEEEeCCH
Confidence 47899998874 333 556677888665532 221 11222333 3456666776652 3567888888
Q ss_pred HHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHh
Q 019931 175 FAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLS 247 (334)
Q Consensus 175 ~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~ 247 (334)
++|+..++.+++++ ||.|++..+.+..+...+... |.+++.++. .|+++|+++++
T Consensus 141 ~~al~~~~~~l~~p--------------Gd~Vlv~~P~y~~y~~~~~~~----g~~~~~~~l~~~~~~~~d~~~l~~~~~ 202 (462)
T PLN02187 141 NQGIEIVFESLARP--------------NANILLPRPGFPHYDARAAYS----GLEVRKFDLLPEKEWEIDLEGIEAIAD 202 (462)
T ss_pred HHHHHHHHHHhcCC--------------CCEEEEeCCCCccHHHHHHHc----CCEEEEEeCccccCCccCHHHHHHhcC
Confidence 99999999988765 788888888877766555555 788877753 26888888775
Q ss_pred cCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCc-ccccccCCCCCccEEEecCccc
Q 019931 248 CCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGG-GVAEQFNCERDVDICVGTLSKA 323 (334)
Q Consensus 248 ~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~-g~~~~~~~~~~~Div~~SlsKa 323 (334)
+ ++++|++.+|+||+|.+.+ +++|+++|++||++||+||+|...+++..-. .+.. +.-... -|+++||||+
T Consensus 203 ~---~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~-~~~~~~-vi~l~SfSK~ 277 (462)
T PLN02187 203 E---NTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGK-FASIVP-VLTLAGISKG 277 (462)
T ss_pred C---CcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHH-hccCCc-EEEEecchhh
Confidence 3 6788888899999999988 7789999999999999999999766642111 1111 111112 4889999999
Q ss_pred ccCCc---cEEee
Q 019931 324 AGCQG---GFIAC 333 (334)
Q Consensus 324 ~G~~G---G~i~~ 333 (334)
|+..| ||+++
T Consensus 278 f~~pGlRiG~~v~ 290 (462)
T PLN02187 278 WVVPGWKIGWIAL 290 (462)
T ss_pred cCCccceeEEEEe
Confidence 98877 89875
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.5e-16 Score=150.20 Aligned_cols=198 Identities=14% Similarity=0.104 Sum_probs=133.6
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHh-------CCCcEEEeccHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLK-------KKEDCLLCPTGFAANMAV 181 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~-------g~e~alv~~sG~~An~~a 181 (334)
..+++|..+. ..+..++.+++++.++......+....|. .++++++++++ ..++++++++|++|+..+
T Consensus 30 ~~~i~l~~~~-~~~~~~~~~~~a~~~~~~~~~~Y~~~~g~----~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~ 104 (397)
T PRK07568 30 IKVYHLNIGQ-PDIKTPEVFFEAIKNYDEEVLAYSHSQGI----PELREAFAKYYKKWGIDVEPDEILITNGGSEAILFA 104 (397)
T ss_pred CCEEEecCCC-CCCCCCHHHHHHHHHHhcCCcCcCCCCCC----HHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHH
Confidence 5678888776 34555788888887654322223333343 55666666665 235678888899999998
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC--------CHHHHHHHHhcCCCCc
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC--------DMSHLKTLLSCCTMRK 253 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~--------D~~~Le~~l~~~~~~~ 253 (334)
+.+++.+ ||.|++..+.+......++.. |.+++.++.+ |+++|++++++ ++
T Consensus 105 ~~~l~~~--------------gd~Vl~~~p~y~~~~~~~~~~----g~~~~~v~~~~~~g~~~~~~~~l~~~~~~---~~ 163 (397)
T PRK07568 105 MMAICDP--------------GDEILVPEPFYANYNGFATSA----GVKIVPVTTKIEEGFHLPSKEEIEKLITP---KT 163 (397)
T ss_pred HHHhcCC--------------CCEEEEecCCCccHHHHHHHc----CCEEEEeecCcccCCCCCCHHHHHHhcCc---cc
Confidence 8887654 677777666666555444444 7777777631 35777777753 67
Q ss_pred EEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCC-cccccccCCCCCccEEEecCcccccCCc-
Q 019931 254 KVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNG-GGVAEQFNCERDVDICVGTLSKAAGCQG- 328 (334)
Q Consensus 254 ~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G-~g~~~~~~~~~~~Div~~SlsKa~G~~G- 328 (334)
++|++.+++||+|.+.+ +++|.++|+++|+++|+||++....+.... .......+. .+..|++.||||.||+.|
T Consensus 164 ~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~-~~~~i~~~S~SK~~~~~G~ 242 (397)
T PRK07568 164 KAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGL-EDRVIIIDSVSKRYSACGA 242 (397)
T ss_pred eEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCC-cCCEEEEecchhhccCCCc
Confidence 88888899999998876 788999999999999999999864432111 111111111 223488999999998655
Q ss_pred --cEEee
Q 019931 329 --GFIAC 333 (334)
Q Consensus 329 --G~i~~ 333 (334)
||+++
T Consensus 243 R~G~~~~ 249 (397)
T PRK07568 243 RIGCLIS 249 (397)
T ss_pred ceEEEec
Confidence 88775
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.8e-16 Score=151.97 Aligned_cols=199 Identities=18% Similarity=0.206 Sum_probs=139.7
Q ss_pred ceeEEEeecCccC---CCCCCHHHHHHHHHhcCCC--CccccccCchHHHHHHHHHHHhHhC-------CCcEEEeccHH
Q 019931 108 FKRLLLFSGNDYL---GLSSHPTIAKAAARHGMGP--RGSALICGYTNYHRLLESCLADLKK-------KEDCLLCPTGF 175 (334)
Q Consensus 108 g~~~l~f~sn~yL---gl~~~p~v~~a~~~~g~g~--~~sr~~~G~~~~~~~LE~~La~~~g-------~e~alv~~sG~ 175 (334)
|+.+++|..+++- .+..++.+++++.+.-... .++....|. .+|+++++++++ .++++++++++
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~----~~lr~aia~~~~~~~~~~~~~~i~~t~G~~ 105 (401)
T TIGR01264 30 EKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGA----LSAREAIASYYHNPDGPIEADDVVLCSGCS 105 (401)
T ss_pred CCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCCCCCC----HHHHHHHHHHHhhcCCCCCHHHEEECcChH
Confidence 3788999988753 4667888888776542221 112223333 556677777665 35678888999
Q ss_pred HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhc
Q 019931 176 AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSC 248 (334)
Q Consensus 176 ~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~ 248 (334)
+|+..++.+++.+ ||.|++..+.+......+... |++++.++. .|++.|++.+++
T Consensus 106 ~al~~~~~~l~~~--------------gd~v~i~~P~y~~~~~~~~~~----g~~v~~~~~~~~~~~~~d~~~l~~~~~~ 167 (401)
T TIGR01264 106 HAIEMCIAALANA--------------GQNILVPRPGFPLYETLAESM----GIEVKLYNLLPDKSWEIDLKQLESLIDE 167 (401)
T ss_pred HHHHHHHHHhCCC--------------CCEEEEeCCCChhHHHHHHHc----CCEEEEeecCCccCCCCCHHHHHHHhcc
Confidence 9999999888764 677777777766666555555 777777653 267888887754
Q ss_pred CCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCC-ccEEEecCcccc
Q 019931 249 CTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERD-VDICVGTLSKAA 324 (334)
Q Consensus 249 ~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~-~Div~~SlsKa~ 324 (334)
++++|++.+++||+|.+.+ +++|+++|+++|+++|+||+|....+. +........+.++ .-|+++||||+|
T Consensus 168 ---~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~vi~~~SfSK~~ 242 (401)
T TIGR01264 168 ---KTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFS--GATFEPLASLSSTVPILSCGGLAKRW 242 (401)
T ss_pred ---CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccC--CcccccHHHcCCCCcEEEEccCcccC
Confidence 5788899999999999876 778899999999999999999865443 2111111122222 138899999999
Q ss_pred cCCc---cEEee
Q 019931 325 GCQG---GFIAC 333 (334)
Q Consensus 325 G~~G---G~i~~ 333 (334)
+..| ||+++
T Consensus 243 ~~~GlRiG~iv~ 254 (401)
T TIGR01264 243 LVPGWRLGWIII 254 (401)
T ss_pred CCccceEEEEEe
Confidence 8877 88876
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.5e-16 Score=151.82 Aligned_cols=199 Identities=14% Similarity=0.128 Sum_probs=135.6
Q ss_pred ceeEEEeecCc--cCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHh------C--CCcEEEeccHHHH
Q 019931 108 FKRLLLFSGND--YLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLK------K--KEDCLLCPTGFAA 177 (334)
Q Consensus 108 g~~~l~f~sn~--yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~------g--~e~alv~~sG~~A 177 (334)
|+.+++|...+ ..++..++.+.+++.+.......+....|. .+|++.+++++ + .++++++++++++
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~~~Y~~~~G~----~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~ 107 (404)
T PRK09265 32 GHKILKLNIGNPAPFGFEAPDEILRDVIRNLPTAQGYSDSKGL----FSARKAIMQYYQQKGIPDVDVDDIYIGNGVSEL 107 (404)
T ss_pred CCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCc----HHHHHHHHHHHhccCCCCCCcccEEEeCChHHH
Confidence 47889998743 347778888888766542222222223333 45667777765 3 2445666666777
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCC
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCT 250 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~ 250 (334)
+..++.+++.+ ||.|++..+.|......+... +.+++.++. .|++++++++..
T Consensus 108 l~~~~~~~~~~--------------gd~Vlv~~p~y~~~~~~~~~~----g~~~v~~~~~~~~~~~~d~~~l~~~~~~-- 167 (404)
T PRK09265 108 IVMAMQALLNN--------------GDEVLVPAPDYPLWTAAVSLS----GGKPVHYLCDEEAGWFPDLDDIRSKITP-- 167 (404)
T ss_pred HHHHHHHhCCC--------------CCEEEEeCCCCcChHHHHHHc----CCEEEEEecccccCCCCCHHHHHHhccc--
Confidence 88888887654 788888888888777666655 666665542 267888887753
Q ss_pred CCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCC-ccEEEecCcccccC
Q 019931 251 MRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERD-VDICVGTLSKAAGC 326 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~-~Div~~SlsKa~G~ 326 (334)
++++|++.+++||+|.+.+ +++|+++|+++|+++|+||+|....++....... ..+.++ .-|+++||||+||+
T Consensus 168 -~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~--~~~~~~~~vi~~~S~SK~~~~ 244 (404)
T PRK09265 168 -RTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISI--ASLAPDLLCVTFNGLSKAYRV 244 (404)
T ss_pred -cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCH--HHcCCCceEEEEecchhhccC
Confidence 6788888899999999998 8889999999999999999998654432110111 111122 23678999999987
Q ss_pred Cc---cEEee
Q 019931 327 QG---GFIAC 333 (334)
Q Consensus 327 ~G---G~i~~ 333 (334)
.| ||+++
T Consensus 245 pGlRiG~~v~ 254 (404)
T PRK09265 245 AGFRVGWMVL 254 (404)
T ss_pred cccceEEEEE
Confidence 76 88774
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-16 Score=150.41 Aligned_cols=186 Identities=18% Similarity=0.181 Sum_probs=133.6
Q ss_pred CCHHHHHHHHHhcC---CCCcc---ccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHhhhhhhccCC
Q 019931 124 SHPTIAKAAARHGM---GPRGS---ALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVGNIASLLAGD 195 (334)
Q Consensus 124 ~~p~v~~a~~~~g~---g~~~s---r~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~~~~~~~~~~ 195 (334)
.++.+.+++.+|-. +...+ ..........+++++++++++|.+ .+++++++++++..++.++...
T Consensus 11 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~------- 83 (364)
T PLN02651 11 IDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHF------- 83 (364)
T ss_pred CCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHh-------
Confidence 46788887765432 11111 001111355788999999999964 4566678889988888766431
Q ss_pred CccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC
Q 019931 196 EKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP 270 (334)
Q Consensus 196 ~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p 270 (334)
...++|.|++....|.++...+.... ..+.+++.++. .|+++|++++++ ++++|++.+++|++|.+.|
T Consensus 84 ---~~~~g~~vl~~~~~h~s~~~~~~~~~-~~g~~v~~v~~~~~~~~d~~~l~~~i~~---~t~lv~v~~~~n~tG~~~~ 156 (364)
T PLN02651 84 ---YKDKKKHVITTQTEHKCVLDSCRHLQ-QEGFEVTYLPVKSDGLVDLDELAAAIRP---DTALVSVMAVNNEIGVIQP 156 (364)
T ss_pred ---ccCCCCEEEEcccccHHHHHHHHHHH-hcCCEEEEEccCCCCcCCHHHHHHhcCC---CcEEEEEECCCCCceeccc
Confidence 00247889888899998766654332 23677777654 278889988864 6899999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCc-cEEe
Q 019931 271 MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQG-GFIA 332 (334)
Q Consensus 271 L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~G-G~i~ 332 (334)
+++|.++|+++|+++++|.+|+.|.+. +.+. .++|+++.|.+|.+|+.| |++.
T Consensus 157 l~~I~~~~~~~g~~~~vD~a~~~g~~~---------~~~~~~~~D~~~~s~hK~~gp~G~g~l~ 211 (364)
T PLN02651 157 VEEIGELCREKKVLFHTDAAQAVGKIP---------VDVDDLGVDLMSISGHKIYGPKGVGALY 211 (364)
T ss_pred HHHHHHHHHHcCCEEEEEcchhhCCcc---------cCcccCCCCEEEechhhhCCCCceEEEE
Confidence 999999999999999999999987431 1222 457999999999766655 5543
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8e-16 Score=151.72 Aligned_cols=201 Identities=16% Similarity=0.172 Sum_probs=138.5
Q ss_pred cceeEEEeecCccC---CCCCCHHHHHHHHHhcCC--CCccccccCchHHHHHHHHHHHhHhC--------------CCc
Q 019931 107 QFKRLLLFSGNDYL---GLSSHPTIAKAAARHGMG--PRGSALICGYTNYHRLLESCLADLKK--------------KED 167 (334)
Q Consensus 107 ~g~~~l~f~sn~yL---gl~~~p~v~~a~~~~g~g--~~~sr~~~G~~~~~~~LE~~La~~~g--------------~e~ 167 (334)
.|+.+++|...+.- .+..++.+++++.+.-.. ...+....|. .+|++.++++++ .++
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~----~~Lr~aia~~~~~~~~~~~~~~~~~~~~~ 106 (412)
T PTZ00433 31 SPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGS----PEAREAVATYWRNSFVHKESLKSTIKKDN 106 (412)
T ss_pred CCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc----HHHHHHHHHHHHhhccccccccCCCChhh
Confidence 44889999987631 255678888877653221 1222223344 445566666543 246
Q ss_pred EEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHH
Q 019931 168 CLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMS 240 (334)
Q Consensus 168 alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~ 240 (334)
+++++++++|+..++.+++.+ ||.|++..+.|......++.. |++++.++. .|++
T Consensus 107 i~it~G~~~al~~~~~~~~~~--------------gd~vlv~~P~y~~~~~~~~~~----g~~~~~i~~~~~~~~~~d~~ 168 (412)
T PTZ00433 107 VVLCSGVSHAILMALTALCDE--------------GDNILVPAPGFPHYETVCKAY----GIEMRFYNCRPEKDWEADLD 168 (412)
T ss_pred EEEeCChHHHHHHHHHHhcCC--------------CCEEEEccCCcccHHHHHHHc----CCEEEEEecCccccCcCCHH
Confidence 778888899999999988764 788888888887776666655 777777653 2678
Q ss_pred HHHHHHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEE
Q 019931 241 HLKTLLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICV 317 (334)
Q Consensus 241 ~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~ 317 (334)
+|++++++ ++++|++.+++||+|.+.+ +++|+++|+++|++||+||+|...+++..-......+.-... -|++
T Consensus 169 ~l~~~~~~---~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~i~~ 244 (412)
T PTZ00433 169 EIRRLVDD---RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVP-RVIL 244 (412)
T ss_pred HHHHHhcc---CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCc-eEEE
Confidence 88887764 6788889999999998776 677899999999999999999865553211011111111112 3889
Q ss_pred ecCcccccCCc---cEEee
Q 019931 318 GTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 318 ~SlsKa~G~~G---G~i~~ 333 (334)
+||||.||..| ||+++
T Consensus 245 ~SfSK~~~~pGlRlG~~i~ 263 (412)
T PTZ00433 245 GGTAKNLVVPGWRLGWLLL 263 (412)
T ss_pred ccchhhcCCCCeeEEEEEE
Confidence 99999998877 88874
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-16 Score=152.92 Aligned_cols=199 Identities=17% Similarity=0.147 Sum_probs=136.2
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhc----CCC-CccccccC-chHHHHHHHHHHHhHhCCC---cEEEeccHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHG----MGP-RGSALICG-YTNYHRLLESCLADLKKKE---DCLLCPTGFAANM 179 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g----~g~-~~sr~~~G-~~~~~~~LE~~La~~~g~e---~alv~~sG~~An~ 179 (334)
.-|+|.++. |. .++.|++++.+|- ... .+...... ....++++++++++++|.+ .+++++++++++.
T Consensus 33 ~iyLd~a~~---~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~ 108 (424)
T PLN02855 33 LVYLDNAAT---SQ-KPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAIN 108 (424)
T ss_pred eEEeeCccc---cC-CCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHH
Confidence 355665443 32 4677888776542 111 11111110 1244678999999999973 3566677788887
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcE
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~ 254 (334)
.++.++... ...+||.|++....|.+....++......|.+++.++.+ |++++++.+++ +++
T Consensus 109 ~i~~~~~~~----------~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~---~t~ 175 (424)
T PLN02855 109 LVAYTWGLA----------NLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSE---KTK 175 (424)
T ss_pred HHHHHhhhh----------cCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhcc---Cce
Confidence 777654210 001378888888899886655543222237777777642 78888888864 789
Q ss_pred EEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCc-cEEe
Q 019931 255 VVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQG-GFIA 332 (334)
Q Consensus 255 lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~G-G~i~ 332 (334)
+|++.+++|++|.+.|+++|.++|+++|+++++|++|+.|... .++. .++|++++|++|.+|+.| |++.
T Consensus 176 lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~---------~~~~~~~~d~~~~s~~K~~gp~G~G~l~ 246 (424)
T PLN02855 176 LVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMP---------VDVQTLGADFLVASSHKMCGPTGIGFLW 246 (424)
T ss_pred EEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcC---------CCchhcCCCEEEeecccccCCCccEEEE
Confidence 9999999999999999999999999999999999999865321 1222 346899999999888776 7765
Q ss_pred e
Q 019931 333 C 333 (334)
Q Consensus 333 ~ 333 (334)
.
T Consensus 247 ~ 247 (424)
T PLN02855 247 G 247 (424)
T ss_pred E
Confidence 4
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-16 Score=154.93 Aligned_cols=202 Identities=18% Similarity=0.172 Sum_probs=137.9
Q ss_pred eeEEEeecC---ccCCCC-CCHHHHHHHHHhcCCCCc--cccccC-chHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHH
Q 019931 109 KRLLLFSGN---DYLGLS-SHPTIAKAAARHGMGPRG--SALICG-YTNYHRLLESCLADLKKKEDCLLCPTGFAANMAV 181 (334)
Q Consensus 109 ~~~l~f~sn---~yLgl~-~~p~v~~a~~~~g~g~~~--sr~~~G-~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~a 181 (334)
|+++|-.+. +.+|-+ -++.+++++.++..+... +.+..| ....++.+|+.+++++|++++++|++|++|+..+
T Consensus 79 r~vinatg~v~~tNlg~s~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~ 158 (464)
T PRK04311 79 RPVINATGVVLHTNLGRALLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGAEDALVVNNNAAAVLLA 158 (464)
T ss_pred cceecCCccEEeccCCCCCCCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCCCeEEEECCHHHHHHHH
Confidence 777776553 234444 367888887665433221 111111 1245689999999999999999999999999988
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCch----h--hHHHHHHhhhcCCcEEEEeeCC---CHHHHHHHHhcCCCC
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHA----S--IIDGIRIAERTKMVEVFVYKHC---DMSHLKTLLSCCTMR 252 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~----s--~~~g~~ls~~~~g~~v~~~~~~---D~~~Le~~l~~~~~~ 252 (334)
+.++ .+ ||.|++.+..|. + +.+.++.. |++++.++++ +++++++++++ +
T Consensus 159 l~~l-~~--------------GdeVIvs~~e~~~~ggs~~i~~~~~~~----G~~l~~v~~~~~t~~~dle~aI~~---~ 216 (464)
T PRK04311 159 LNAL-AA--------------GKEVIVSRGELVEIGGAFRIPDVMRQA----GARLVEVGTTNRTHLRDYEQAINE---N 216 (464)
T ss_pred HHHh-CC--------------CCEEEEcchhhhhcCcchhhHHHHHHC----CcEEEEECCCCCCCHHHHHHhcCc---c
Confidence 8764 32 565665544333 1 22333333 8888888763 67788888864 7
Q ss_pred cEEEEEcCCCCC--CC--CccCHHHHHHHHHHcCCEEEEecCcccccccCCC-ccccccc----CCCCCccEEEecCccc
Q 019931 253 KKVVVTDSLFSM--DG--DFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNG-GGVAEQF----NCERDVDICVGTLSKA 323 (334)
Q Consensus 253 ~~lVv~e~v~n~--~G--~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G-~g~~~~~----~~~~~~Div~~SlsKa 323 (334)
|++|++++++|+ +| ...|+++|+++|++||+++|+|.++ |++++.+ .|+.... .+..++|++++|.+|.
T Consensus 217 TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gs--G~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~ 294 (464)
T PRK04311 217 TALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGS--GSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKL 294 (464)
T ss_pred CeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCC--cccccchhccCCCCCchhhHHhcCCcEEEecCccc
Confidence 899999999885 45 6789999999999999999999964 4454322 1111111 1235789999999999
Q ss_pred cc-CCccEEeeC
Q 019931 324 AG-CQGGFIACR 334 (334)
Q Consensus 324 ~G-~~GG~i~~~ 334 (334)
+| ..+|+++++
T Consensus 295 LgGp~~G~i~g~ 306 (464)
T PRK04311 295 LGGPQAGIIVGK 306 (464)
T ss_pred ccCCceEEEEEc
Confidence 96 578998874
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.5e-16 Score=150.24 Aligned_cols=185 Identities=16% Similarity=0.159 Sum_probs=132.9
Q ss_pred CCHHHHHHHHHhcC---CCCcccccc--CchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHhhhhhhccCCC
Q 019931 124 SHPTIAKAAARHGM---GPRGSALIC--GYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVGNIASLLAGDE 196 (334)
Q Consensus 124 ~~p~v~~a~~~~g~---g~~~sr~~~--G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~~~~~~~~~~~ 196 (334)
.++.|++++.+|-. +........ -.....+++++.+++++|.+ .++++++|++++..++.++...
T Consensus 11 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~-------- 82 (379)
T TIGR03402 11 VDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAA-------- 82 (379)
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHh--------
Confidence 36788888766521 221111000 01345678889999999964 4667789999999988876431
Q ss_pred ccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCH
Q 019931 197 KSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPM 271 (334)
Q Consensus 197 ~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL 271 (334)
..+++.|++....|.+....+..... .|.+++.++. .|++++++++++ ++++|++.+++|++|.+.|+
T Consensus 83 ---~~~~~~vv~~~~~~~s~~~~~~~~~~-~G~~v~~v~~~~~g~~~~~~l~~~i~~---~~~lv~i~~~~n~tG~~~~~ 155 (379)
T TIGR03402 83 ---QPEKRHIITTAVEHPAVLSLCQHLEK-QGYKVTYLPVDEEGRLDLEELRAAITD---DTALVSVMWANNETGTIFPI 155 (379)
T ss_pred ---cCCCCeEEEcccccHHHHHHHHHHHH-cCCEEEEEccCCCCcCCHHHHHHhcCC---CcEEEEEEcccCCeeecccH
Confidence 01257888888899887655543322 3778777764 378899988864 78999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCc-cEEe
Q 019931 272 VELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQG-GFIA 332 (334)
Q Consensus 272 ~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~G-G~i~ 332 (334)
++|.++|+++|+++++|++|+.|..- ..+. .++|+++.|.+|.+|+.| |++.
T Consensus 156 ~~I~~l~~~~g~~vivD~~~~~g~~~---------~~~~~~~~D~~~~s~~K~~gp~G~g~l~ 209 (379)
T TIGR03402 156 EEIGEIAKERGALFHTDAVQAVGKIP---------IDLKEMNIDMLSLSGHKLHGPKGVGALY 209 (379)
T ss_pred HHHHHHHHHcCCEEEEECcccccccc---------cCcccCCCCEEEEcHHHcCCCCceEEEE
Confidence 99999999999999999999875321 1222 467999999999777666 5543
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-16 Score=151.41 Aligned_cols=197 Identities=13% Similarity=0.036 Sum_probs=138.5
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHHh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al~ 186 (334)
.++|+|+.|+. .+..+|.+++++.++-..... ..++...-..+|++++++++|. +++++++++++|+..++.+++
T Consensus 28 ~~~i~l~~~~~-~~~~~~~~~~a~~~~~~~~~~--~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~ 104 (380)
T PRK06225 28 KEMIWMGQNTN-HLGPHEEVREAMIRCIEEGEY--CKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRAFL 104 (380)
T ss_pred CCeEEccCCCC-CCCCCHHHHHHHHHHHhcCCC--CCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhc
Confidence 57889998864 455689999988765332111 1122223357899999999885 457888999999999998877
Q ss_pred hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC--------CCHHHHHHHHhcCCCCcEEEEE
Q 019931 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH--------CDMSHLKTLLSCCTMRKKVVVT 258 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~--------~D~~~Le~~l~~~~~~~~lVv~ 258 (334)
.+ ||.|++..+.+......+... |++++.++. .|++++++.+.+ ++++|++
T Consensus 105 ~~--------------gd~vl~~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~~d~~~l~~~~~~---~~~~v~l 163 (380)
T PRK06225 105 SP--------------GDNAVTPDPGYLIIDNFASRF----GAEVIEVPIYSEECNYKLTPELVKENMDE---NTRLIYL 163 (380)
T ss_pred CC--------------CCEEEEcCCCCcchHHHHHHh----CceEEeeccccccCCccCCHHHHHhhcCC---CceEEEE
Confidence 54 676776666665554444444 777777652 267888877754 6788887
Q ss_pred cCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEe
Q 019931 259 DSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIA 332 (334)
Q Consensus 259 e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~ 332 (334)
.+++||+|.+.+ +++|+++|+++|+++|+||++..... +.... ..+.++..|++.||||.||+.| ||++
T Consensus 164 ~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~---~~~~~--~~~~~~~~i~~~s~SK~~g~~G~RiG~i~ 238 (380)
T PRK06225 164 IDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAR---EHTLA--AEYAPEHTVTSYSFSKIFGMAGLRIGAVV 238 (380)
T ss_pred eCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhc---cCCch--hhcCCCCEEEEeechhhcCCccceeEEEe
Confidence 789999998765 88899999999999999999863211 11111 1123345688999999998766 8887
Q ss_pred eC
Q 019931 333 CR 334 (334)
Q Consensus 333 ~~ 334 (334)
++
T Consensus 239 ~~ 240 (380)
T PRK06225 239 AT 240 (380)
T ss_pred cC
Confidence 63
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.8e-16 Score=149.99 Aligned_cols=196 Identities=16% Similarity=0.097 Sum_probs=132.3
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhC-----CCcEEEeccHHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKK-----KEDCLLCPTGFAANMAVIV 183 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g-----~e~alv~~sG~~An~~ai~ 183 (334)
..++||+.++. ....+|.+++++.+... ...+....|...+.+.+.+.+.+..| .+++++++++.+++..++.
T Consensus 27 ~~~i~l~~~~p-~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~ 104 (364)
T PRK07865 27 DGIVDLSVGTP-VDPVPPVIQEALAAAAD-APGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPT 104 (364)
T ss_pred CCEEEcCCCCC-CCCCCHHHHHHHHHHHh-hCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHH
Confidence 56899998863 34457888887765321 12344445655665666666655444 2345666666777777666
Q ss_pred HH-hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCC
Q 019931 184 AV-GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLF 262 (334)
Q Consensus 184 al-~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~ 262 (334)
++ +++ ||.|+++.+.|..+...++.. |++++.++ ++++++. .++++|++++++
T Consensus 105 ~l~~~~--------------gd~Vl~~~p~y~~~~~~~~~~----g~~~~~~~--~~~~l~~------~~~~~v~~~~p~ 158 (364)
T PRK07865 105 LLGLGP--------------GDVVVIPELAYPTYEVGARLA----GATVVRAD--SLTELGP------QRPALIWLNSPS 158 (364)
T ss_pred HHcCCC--------------CCEEEECCCCcccHHHHHHhc----CCEEEecC--ChhhCCc------ccceEEEEcCCC
Confidence 65 443 788999999998888777766 78877764 4333322 367888888999
Q ss_pred CCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCccccccc----CCCCCccEEEecCcccccCCc---cEEe
Q 019931 263 SMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQF----NCERDVDICVGTLSKAAGCQG---GFIA 332 (334)
Q Consensus 263 n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~----~~~~~~Div~~SlsKa~G~~G---G~i~ 332 (334)
||+|.+.+ +++|.++|+++|++||+||+|....+. +....... +...+..|+++||||+||..| ||++
T Consensus 159 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~ 236 (364)
T PRK07865 159 NPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWD--AEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVA 236 (364)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccC--CCCCccccccccCCccceEEEEeechhccCCCceeeEEEe
Confidence 99998877 678889999999999999999864432 22111000 111123599999999998766 9988
Q ss_pred eC
Q 019931 333 CR 334 (334)
Q Consensus 333 ~~ 334 (334)
++
T Consensus 237 ~~ 238 (364)
T PRK07865 237 GD 238 (364)
T ss_pred cC
Confidence 64
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-16 Score=152.34 Aligned_cols=199 Identities=20% Similarity=0.199 Sum_probs=138.6
Q ss_pred ceeEEEeecCcc---CCCCCCHHHHHHHHHhcC-CC-CccccccCchHHHHHHHHHHHhHhCC--------CcEEEeccH
Q 019931 108 FKRLLLFSGNDY---LGLSSHPTIAKAAARHGM-GP-RGSALICGYTNYHRLLESCLADLKKK--------EDCLLCPTG 174 (334)
Q Consensus 108 g~~~l~f~sn~y---Lgl~~~p~v~~a~~~~g~-g~-~~sr~~~G~~~~~~~LE~~La~~~g~--------e~alv~~sG 174 (334)
|.++++|...+. ..+..++.+++++.+.-. .. ..+....| ..++++.++++++. +++++++++
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~ 105 (403)
T TIGR01265 30 EKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVG----ALAAREAVAEYLSSDLPGKLTADDVVLTSGC 105 (403)
T ss_pred CCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCC----CHHHHHHHHHHHHhhcCCCCCHHHEEEecCh
Confidence 478899988764 246667888887765422 11 11212223 35677777777763 457888889
Q ss_pred HHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHh
Q 019931 175 FAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLS 247 (334)
Q Consensus 175 ~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~ 247 (334)
++|+..++.+++.+ ||.|++..+.+......+... +.+++.++. .|++++++++.
T Consensus 106 t~al~~~~~~l~~~--------------gd~Vlv~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~~~ 167 (403)
T TIGR01265 106 SQAIEICIEALANP--------------GANILVPRPGFPLYDTRAAFS----GLEVRLYDLLPEKDWEIDLDGLEALAD 167 (403)
T ss_pred HHHHHHHHHHhCCC--------------CCEEEEeCCCchhHHHHHHHc----CCEEEEecCCcccCCccCHHHHHHHhC
Confidence 99999999988754 777888888776655544444 677776643 26788888775
Q ss_pred cCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCC-ccEEEecCccc
Q 019931 248 CCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERD-VDICVGTLSKA 323 (334)
Q Consensus 248 ~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~-~Div~~SlsKa 323 (334)
+ ++++|++.+++||+|.+.+ +++|+++|+++|+++|+||+|....++. ........+.++ .-|+++||||.
T Consensus 168 ~---~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~vi~~~S~SK~ 242 (403)
T TIGR01265 168 E---KTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGD--APFIPMASFASIVPVLSLGGISKR 242 (403)
T ss_pred c---CccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC--CCccchhhhccCCcEEEEeecccc
Confidence 3 6788888899999999876 7889999999999999999998655432 111111112221 13888999999
Q ss_pred ccCCc---cEEee
Q 019931 324 AGCQG---GFIAC 333 (334)
Q Consensus 324 ~G~~G---G~i~~ 333 (334)
|+..| ||+++
T Consensus 243 ~~~pGlRiG~~v~ 255 (403)
T TIGR01265 243 WVVPGWRLGWIII 255 (403)
T ss_pred cCCCcceEEEEEE
Confidence 98877 88775
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-16 Score=151.21 Aligned_cols=199 Identities=12% Similarity=0.072 Sum_probs=139.2
Q ss_pred ceeEEEeecCccC--CCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHh----C----CCcEEEeccHHH
Q 019931 108 FKRLLLFSGNDYL--GLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLK----K----KEDCLLCPTGFA 176 (334)
Q Consensus 108 g~~~l~f~sn~yL--gl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~----g----~e~alv~~sG~~ 176 (334)
|+.+++|+.++.. ++..++.+++++.+.- .+...+....| ..+|++++++++ | .+++++++++++
T Consensus 29 ~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~~g----~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~ 104 (398)
T PRK08363 29 GIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGHNYYGPSEG----LPELREAIVKREKRKNGVDITPDDVRVTAAVTE 104 (398)
T ss_pred CCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCC----cHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHH
Confidence 4789999988753 7777888888775532 11111222233 356777777765 3 245677788899
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEee-C------CCHHHHHHHHhcC
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYK-H------CDMSHLKTLLSCC 249 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~-~------~D~~~Le~~l~~~ 249 (334)
|+..++.+++++ ||.|++..+.|......+... +.+++.++ . .|++.|++++++
T Consensus 105 al~~~~~~~~~~--------------gd~Vl~~~p~y~~~~~~~~~~----g~~~v~~~~~~~~~~~~d~~~l~~~~~~- 165 (398)
T PRK08363 105 ALQLIFGALLDP--------------GDEILIPGPSYPPYTGLVKFY----GGVPVEYRTIEEEGWQPDIDDIRKKITE- 165 (398)
T ss_pred HHHHHHHHhCCC--------------CCEEEEcCCCCcchHHHHHHc----CCEEEEeccccccCCcCCHHHHHhhCCc-
Confidence 999999888764 788888888888877666655 66666662 1 257777777653
Q ss_pred CCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC
Q 019931 250 TMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 250 ~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++|++.+++||+|.+.+ +++|+++|+++|+++|+||+|....+........ ......+ .|++.||||.|+.
T Consensus 166 --~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~-~~~~~~~-vi~~~SfSK~~~~ 241 (398)
T PRK08363 166 --KTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPG-SLTKDVP-VIVMNGLSKVYFA 241 (398)
T ss_pred --ceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHH-HcCcCCc-EEEEecchhccCC
Confidence 6788888899999998887 8889999999999999999998654422111111 1111112 4778999999988
Q ss_pred Cc---cEEee
Q 019931 327 QG---GFIAC 333 (334)
Q Consensus 327 ~G---G~i~~ 333 (334)
.| ||+++
T Consensus 242 ~GlRiG~~~~ 251 (398)
T PRK08363 242 TGWRLGYIYF 251 (398)
T ss_pred ccceEEEEEE
Confidence 77 88874
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-16 Score=153.37 Aligned_cols=197 Identities=15% Similarity=0.104 Sum_probs=136.2
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHHh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al~ 186 (334)
+.+++|+.|+ -.+..+|.+++++.+.-.....++ . .-..+|++.|+++++. +.+++++++++++..++.+++
T Consensus 29 ~~~i~l~~ne-n~~~~~~~v~~a~~~~~~~~~~Yp-~----~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~ 102 (366)
T PRK01533 29 HSFVKLASNE-NPFGCSPRVLDELQKSWLDHALYP-D----GGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVL 102 (366)
T ss_pred CceEEeCCCC-CCCCCCHHHHHHHHHHHHhcCcCC-C----CCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhc
Confidence 6789999986 467778999997765421111111 1 1236788999999885 456777777889888888887
Q ss_pred hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC----CHHHHHHHHhcCCCCcEEEEEcCCC
Q 019931 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC----DMSHLKTLLSCCTMRKKVVVTDSLF 262 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~----D~~~Le~~l~~~~~~~~lVv~e~v~ 262 (334)
++ ||.|++..+.+..+...+... |.+++.++.+ |+++|++.+++ ++++|++.+++
T Consensus 103 ~~--------------gd~vlv~~P~y~~~~~~~~~~----g~~v~~v~~~~~~~d~~~l~~~~~~---~~~~v~i~~P~ 161 (366)
T PRK01533 103 KA--------------GDNIVTAGATFPQYRHHAIIE----GCEVKEVALNNGVYDLDEISSVVDN---DTKIVWICNPN 161 (366)
T ss_pred CC--------------CCEEEEcCCcHHHHHHHHHHc----CCEEEEeecCCCCcCHHHHHHHhCc---CCcEEEEeCCC
Confidence 64 788888888877777666666 7888877653 78888887754 67888888999
Q ss_pred CCCCCccCHHHHHHHH---HHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 263 SMDGDFAPMVELVKLR---RKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 263 n~~G~~~pL~~L~ela---~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
||+|.+.+.+++.+|+ ++++ ++|+||+|...+............. ..+..|++.||||+||..| ||++++
T Consensus 162 NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~-~~~~vi~~~SfSK~~~l~GlRiG~~i~~ 237 (366)
T PRK01533 162 NPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLE-KHKNILVLRTFSKAYGLASFRVGYAVGH 237 (366)
T ss_pred CCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhc-cCCCEEEEeCchHHhcChHHHHhHHhCC
Confidence 9999999976655555 4555 6788999974332210001111111 1123489999999999877 887653
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.7e-16 Score=149.01 Aligned_cols=195 Identities=16% Similarity=0.091 Sum_probs=137.9
Q ss_pred EEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHHhhh
Q 019931 111 LLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAVGNI 188 (334)
Q Consensus 111 ~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al~~~ 188 (334)
.++|..|+. .+..+|.+++++.++-......++ . .+...+|++++|++++. +++++++++++++..++.+++++
T Consensus 24 ~~~l~~~~~-~~~~p~~~~~a~~~~~~~~~~~~y--~-~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~~~ 99 (351)
T PRK14807 24 KYKMDANET-PFELPEEVIKNIQEIVKSSQVNIY--P-DPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFINK 99 (351)
T ss_pred eeEccCCCC-CCCCCHHHHHHHHHHhhcCcccCC--C-CccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhcCC
Confidence 467887764 677789999988764321111111 1 12247899999999986 34566666677788888877664
Q ss_pred hhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCC
Q 019931 189 ASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFS 263 (334)
Q Consensus 189 ~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n 263 (334)
||.|++..+.+......++.. |++++.++. .|++++++.++. .++++|++.+++|
T Consensus 100 --------------gd~Vlv~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~~~~--~~~k~v~l~~p~N 159 (351)
T PRK14807 100 --------------GDVVIYPHPSFAMYSVYSKIA----GAVEIPVKLKEDYTYDVGSFIKVIEK--YQPKLVFLCNPNN 159 (351)
T ss_pred --------------CCEEEEeCCChHHHHHHHHHc----CCeEEEeecCCCCCCCHHHHHHHhhc--cCCCEEEEeCCCC
Confidence 777887777766555544544 778777754 267888888864 2678888889999
Q ss_pred CCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 264 MDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 264 ~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
|+|.+.+.+++.+++++++.++|+||+|.. .++.. ....... .+..|+++||||+||..| ||++++
T Consensus 160 PtG~~~~~~~l~~l~~~~~~~~ivDe~y~~-~~~~~---~~~~~~~-~~~vi~~~S~SK~~~~~GlRiG~~v~~ 228 (351)
T PRK14807 160 PTGSVIEREDIIKIIEKSRGIVVVDEAYFE-FYGNT---IVDVINE-FENLIVLRTLSKAFGLAGLRVGYAVAN 228 (351)
T ss_pred CCCCCCCHHHHHHHHHhCCCEEEEeCcchh-hcccc---hHHHhhh-CCCEEEEecchHhcccchhceeeeecC
Confidence 999999999999999999999999999974 33321 1111111 123589999999999877 998864
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=148.83 Aligned_cols=196 Identities=14% Similarity=0.117 Sum_probs=135.3
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC-CCCccccccCchHHHHHHHHHHHhHh----CC----CcEEEeccHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM-GPRGSALICGYTNYHRLLESCLADLK----KK----EDCLLCPTGFAANM 179 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~-g~~~sr~~~G~~~~~~~LE~~La~~~----g~----e~alv~~sG~~An~ 179 (334)
..+++|..++ ..+..+|.+.+++.++-. +...+....|. .+|++.+++++ |. +++++++++++|+.
T Consensus 30 ~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~----~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~ 104 (388)
T PRK07337 30 RDIIHMGIGE-PDFTAPEPVVEAAARALRRGVTQYTSALGL----APLREAIAAWYARRFGLDVAPERIVVTAGASAALL 104 (388)
T ss_pred CCEEEeCCcC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCC----HHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHH
Confidence 5678888775 345557888887765432 21222222333 45666666654 42 46778888899998
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMR 252 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~ 252 (334)
.++.+++++ ||.|++..+.|......+... +++++.++.+ |+++|++.+.+ +
T Consensus 105 ~~~~~l~~~--------------gd~Vlv~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~l~~~~~~---~ 163 (388)
T PRK07337 105 LACLALVER--------------GDEVLMPDPSYPCNRHFVAAA----EGRPVLVPSGPAERFQLTAADVEAAWGE---R 163 (388)
T ss_pred HHHHHhcCC--------------CCEEEEeCCCchhhHHHHHHc----CCEEEEeecCCccCCcCCHHHHHhhcCc---c
Confidence 888887754 788888888888877666555 6777777642 56777777653 6
Q ss_pred cEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc-
Q 019931 253 KKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG- 328 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G- 328 (334)
+++|++.+++||+|.+.+ +++|+++|+++++++|+||+|....+. +... ......++ -|++.||||.||..|
T Consensus 164 ~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~--~~~~-~~~~~~~~-vi~~~S~SK~~~~~G~ 239 (388)
T PRK07337 164 TRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYD--AAPV-SALSLGDD-VITINSFSKYFNMTGW 239 (388)
T ss_pred ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccC--CCCc-ChhhccCC-EEEEEechhhcCCchh
Confidence 788888999999999877 678889999999999999999853332 2111 11111122 267899999998766
Q ss_pred --cEEeeC
Q 019931 329 --GFIACR 334 (334)
Q Consensus 329 --G~i~~~ 334 (334)
||++++
T Consensus 240 RiG~~~~~ 247 (388)
T PRK07337 240 RLGWLVVP 247 (388)
T ss_pred heeeeecC
Confidence 888763
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.7e-17 Score=152.10 Aligned_cols=211 Identities=18% Similarity=0.178 Sum_probs=142.8
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFA 176 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~ 176 (334)
..|++||+||||-+. .-+|. +||+|.+++.+.. .-...+-.+. ++...++.++|++.+.. ..++|.+||++
T Consensus 44 lyDe~G~ryLD~f~Gi~tvslGH-chP~v~~a~~kQl~~l~H~t~~~~--~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsE 120 (442)
T KOG1404|consen 44 LYDEEGRRYLDAFGGIVTVSLGH-CHPDVVAAAVKQLKKLYHTTSGYL--NPPIHDLAEALVSKLPGDLKVVFFVNSGSE 120 (442)
T ss_pred EEcCCCceeehhhCCeEEEEcCC-CChHHHHHHHHhhhhhEEeecccc--CCcHHHHHHHHHHhCCCCceEEEEecCCch
Confidence 346888999997664 45777 5999999775432 1111111122 34556777777777653 44667799999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh---cC---Cc--EEE------Eee--C-CC-
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER---TK---MV--EVF------VYK--H-CD- 238 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~---~~---g~--~v~------~~~--~-~D- 238 (334)
||.++++.... .++.-|+|-....+|++....+.+... +. +. .+. +|+ . ++
T Consensus 121 ANelal~mar~-----------Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~ 189 (442)
T KOG1404|consen 121 ANELALKMARL-----------YTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSN 189 (442)
T ss_pred HHHHHHHHHHH-----------hcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCc
Confidence 99999985443 223468888888999987666555421 10 00 000 000 0 01
Q ss_pred --------HHHHHHHHhcCC-CCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-c
Q 019931 239 --------MSHLKTLLSCCT-MRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-A 304 (334)
Q Consensus 239 --------~~~Le~~l~~~~-~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~ 304 (334)
.++|+.++.... .....++.|++.+..|.+.+ |++..++|+++|.++|.||+|+. +||+|..+ +
T Consensus 190 ~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtG--fGRtG~~wgf 267 (442)
T KOG1404|consen 190 EEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTG--FGRTGHMWGF 267 (442)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhc--cccccccccc
Confidence 245666665432 34568899999999998765 99999999999999999999995 89999654 5
Q ss_pred cccCCCCCccEEEecCcccccC---CccEEee
Q 019931 305 EQFNCERDVDICVGTLSKAAGC---QGGFIAC 333 (334)
Q Consensus 305 ~~~~~~~~~Div~~SlsKa~G~---~GG~i~~ 333 (334)
++.++.|| |+ |++|++|. .|++|++
T Consensus 268 e~h~v~PD--Iv--TmAKgiGnG~Pl~AVvtt 295 (442)
T KOG1404|consen 268 ESHGVVPD--IV--TMAKGIGNGFPLGAVVTT 295 (442)
T ss_pred cccCCCcc--HH--HHHhhccCCCcceeeecC
Confidence 77888885 45 99999985 5676654
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.2e-16 Score=151.69 Aligned_cols=198 Identities=14% Similarity=0.085 Sum_probs=134.9
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHH----hcCCCCccccc--cCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAAR----HGMGPRGSALI--CGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMA 180 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~----~g~g~~~sr~~--~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ 180 (334)
+.++.|.+|. +|.. ++.+++++.+ ++.+...+... .+.....+++++ + +++|++ .+++++++++++..
T Consensus 26 ~~~iyld~~a-~g~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~ 101 (406)
T TIGR01814 26 NAVIYLDGNS-LGLM-PKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVGAKEDEVVVMNTLTINLHL 101 (406)
T ss_pred CCcEEecCCC-cCcC-cHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccCCCCCcEEEeCCchHHHHH
Confidence 3456676666 7765 8888886653 44333222211 222345556655 4 788864 46666777888787
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEE----EEee-C----CCHHHHHHHHhcCCC
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEV----FVYK-H----CDMSHLKTLLSCCTM 251 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v----~~~~-~----~D~~~Le~~l~~~~~ 251 (334)
++.++.+++ +++++|+++...|.+....+.......|+++ +.++ . .|++++++.++...+
T Consensus 102 ~~~~~~~~~-----------~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 170 (406)
T TIGR01814 102 LLASFYKPT-----------PKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKNGD 170 (406)
T ss_pred HHHHhcCCc-----------CCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhcCC
Confidence 787765431 1245788888999986655532111225554 2333 2 278899988865445
Q ss_pred CcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccc-cCCcc
Q 019931 252 RKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAA-GCQGG 329 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~-G~~GG 329 (334)
++++|++++++|++|.+.|+++|.++|+++|+++++|++|++|.+. +++ ..++|++++|.+|.+ |+.||
T Consensus 171 ~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~---------id~~~~gvD~~~~s~hK~l~g~pG~ 241 (406)
T TIGR01814 171 DIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVP---------LDLHDWGVDFACWCTYKYLNAGPGA 241 (406)
T ss_pred CeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcc---------cccccCCCCEEEEcCccccCCCCCe
Confidence 7999999999999999999999999999999999999999987541 223 246899999999987 44554
Q ss_pred E
Q 019931 330 F 330 (334)
Q Consensus 330 ~ 330 (334)
+
T Consensus 242 ~ 242 (406)
T TIGR01814 242 G 242 (406)
T ss_pred E
Confidence 3
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.4e-16 Score=148.30 Aligned_cols=199 Identities=14% Similarity=0.063 Sum_probs=133.6
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC-----CcEEEeccHHHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK-----EDCLLCPTGFAANMAVI 182 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~-----e~alv~~sG~~An~~ai 182 (334)
++.++||++++ .....+|.+++++++.. ....+....|...+.+++.+.+.+..|. ++++++++++++...++
T Consensus 20 ~~~~i~l~~~~-p~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~ 97 (357)
T TIGR03539 20 PDGIVDLSVGT-PVDPVPPLIRAALAAAA-DAPGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLP 97 (357)
T ss_pred CCCeEEccCCC-CCCCCCHHHHHHHHHHH-hhCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHH
Confidence 47789999876 33555788888776532 2223344456666666666666655442 45666777788877777
Q ss_pred HHH-hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCC
Q 019931 183 VAV-GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSL 261 (334)
Q Consensus 183 ~al-~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v 261 (334)
.++ .+ +||.|+++.+.|..+...+... |++++.++ |++.++ . .++++|+++++
T Consensus 98 ~~l~~~--------------~gd~Vl~~~p~y~~~~~~~~~~----g~~~~~v~--~~~~l~----~--~~~~~v~~~~p 151 (357)
T TIGR03539 98 TLLGLG--------------PGDTVVIPELAYPTYEVGALLA----GATPVAAD--DPTELD----P--VGPDLIWLNSP 151 (357)
T ss_pred HHHcCC--------------CCCEEEECCCCcHHHHHHHHhc----CCEEeccC--ChhhcC----c--cCccEEEEeCC
Confidence 766 34 3888999999988877776655 78877763 443332 1 36789999999
Q ss_pred CCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccc--cCCCCCccEEEecCcccccCCc---cEEee
Q 019931 262 FSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQ--FNCERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 262 ~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~--~~~~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
+||+|.+.+ +++|.++|+++|+++|+||+|....++......... .+...+..|+++||||.||+.| ||+++
T Consensus 152 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~ 231 (357)
T TIGR03539 152 GNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAG 231 (357)
T ss_pred CCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEec
Confidence 999999887 667899999999999999999753332211111110 0111122489999999997655 88876
Q ss_pred C
Q 019931 334 R 334 (334)
Q Consensus 334 ~ 334 (334)
+
T Consensus 232 ~ 232 (357)
T TIGR03539 232 D 232 (357)
T ss_pred C
Confidence 4
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.1e-16 Score=148.22 Aligned_cols=182 Identities=23% Similarity=0.183 Sum_probs=132.1
Q ss_pred CCHHHHHHHHHhcC-CCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHhhhhhhccCCCccCC
Q 019931 124 SHPTIAKAAARHGM-GPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFK 200 (334)
Q Consensus 124 ~~p~v~~a~~~~g~-g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~ 200 (334)
.+|.+++++.++-. ..+.+....+....++++++++++++|.+ ..+++++|++||..++.++.... .
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~----------~ 101 (371)
T PRK13520 32 PHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLA----------K 101 (371)
T ss_pred chHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhc----------c
Confidence 57888887765432 22233334566677789999999999975 35788999999999988765420 0
Q ss_pred CCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHH
Q 019931 201 DEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELV 275 (334)
Q Consensus 201 ~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ 275 (334)
++++.|++....|.+....++.. |.+++.++. .|+++|++++++ ++++|++..+.|++|.+.|+++|.
T Consensus 102 ~~~~~vl~~~~~h~s~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~vi~~~~~~~tG~~~~l~~I~ 174 (371)
T PRK13520 102 AEKPNIVVPESAHFSFDKAADML----GVELRRAPLDDDYRVDVKAVEDLIDD---NTIGIVGIAGTTELGQVDPIPELS 174 (371)
T ss_pred CCCceEEecCcchHHHHHHHHHc----CceEEEecCCCCCcCCHHHHHHHHhh---CCEEEEEEcCCcCCcccCCHHHHH
Confidence 13678888889999987776655 677777763 389999999975 466666556678899999999999
Q ss_pred HHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccc
Q 019931 276 KLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAA 324 (334)
Q Consensus 276 ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~ 324 (334)
++|+++|+++++|++|+.++++....+. .+.. ..++|.+..|.+|..
T Consensus 175 ~l~~~~g~~livD~a~~~~~~~~~~~~~--~~~~~~~~vd~~~~s~~K~~ 222 (371)
T PRK13520 175 KIALENGIFLHVDAAFGGFVIPFLDDPP--NFDFSLPGVDSITIDPHKMG 222 (371)
T ss_pred HHHHHcCCCEEEEecchhHHHHhhcCCC--CccccCCCCceEEECCcccc
Confidence 9999999999999999976542211111 1122 246788888899964
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.3e-16 Score=148.76 Aligned_cols=177 Identities=20% Similarity=0.125 Sum_probs=130.0
Q ss_pred CCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--c-EEEeccHHHHHHHHHHHHhhhhhhccCCCccCC
Q 019931 124 SHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--D-CLLCPTGFAANMAVIVAVGNIASLLAGDEKSFK 200 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~-alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~ 200 (334)
-++++.+++.++..+ ++.. ......+++++.+++++|.+ . ++++++|++|+..++.+++.+
T Consensus 10 ~~~~v~~a~~~~~~~---~~~~-~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~------------ 73 (356)
T cd06451 10 VPPRVLKAMNRPMLG---HRSP-EFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEP------------ 73 (356)
T ss_pred CCHHHHHHhCCCccC---CCCH-HHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCC------------
Confidence 468888887654332 1211 22456789999999999973 3 456688899999999888754
Q ss_pred CCCeEEEEcCCCchhh--HHHHHHhhhcCCcEEEEee-----CCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHH
Q 019931 201 DEKIAIFSDALNHASI--IDGIRIAERTKMVEVFVYK-----HCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVE 273 (334)
Q Consensus 201 ~~gd~Vl~d~~~H~s~--~~g~~ls~~~~g~~v~~~~-----~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~ 273 (334)
||.|++....|.+. ...++.. |++++.++ +.|.+++++.+++ .++++|++.+++|++|.+.|+++
T Consensus 74 --g~~vl~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~~~l~~~i~~--~~~~~v~i~~~~~~~G~~~~~~~ 145 (356)
T cd06451 74 --GDKVLVGVNGVFGDRWADMAERY----GADVDVVEKPWGEAVSPEEIAEALEQ--HDIKAVTLTHNETSTGVLNPLEG 145 (356)
T ss_pred --CCEEEEecCCchhHHHHHHHHHh----CCCeEEeecCCCCCCCHHHHHHHHhc--cCCCEEEEeccCCCcccccCHHH
Confidence 77788777777652 3333333 67777765 3488999998864 26788888889999999999999
Q ss_pred HHHHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccccC-Cc-cEEee
Q 019931 274 LVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAAGC-QG-GFIAC 333 (334)
Q Consensus 274 L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~G~-~G-G~i~~ 333 (334)
|.++|+++|+++++|++|++|... +.+ ..++|++++|++|.|+. .| |+++.
T Consensus 146 i~~~a~~~~~~li~D~~~~~g~~~---------~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~ 199 (356)
T cd06451 146 IGALAKKHDALLIVDAVSSLGGEP---------FRMDEWGVDVAYTGSQKALGAPPGLGPIAF 199 (356)
T ss_pred HHHHHHhcCCEEEEeeehhccCcc---------ccccccCccEEEecCchhccCCCCcceeEE
Confidence 999999999999999999865321 111 12468999999999986 34 77765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-15 Score=148.46 Aligned_cols=205 Identities=13% Similarity=0.071 Sum_probs=139.7
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCC----CcEEEeccHHHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKK----EDCLLCPTGFAANMAVI 182 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~----e~alv~~sG~~An~~ai 182 (334)
|.++++|..+. ..+..+|.+++++.+.- .+...+....|...+.+.+++.+++.+|. +++++++++++|+..++
T Consensus 32 ~~~~i~l~~g~-p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~ 110 (402)
T PRK06107 32 GRSIVDLTVGE-PDFDTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLAL 110 (402)
T ss_pred cCCEEEcCCCC-CCCCCCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHH
Confidence 36788998876 35556788888765532 22233445567777888888888877664 34666677789999988
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCCCCcEE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCTMRKKV 255 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~~~~~l 255 (334)
.+++.+ ||.|++..+++......+... +..++.++. .|+++|++.+++ ++++
T Consensus 111 ~~~~~~--------------gd~vl~~~p~y~~y~~~~~~~----~~~~~~v~~~~~~~~~~~~~~l~~~~~~---~~~~ 169 (402)
T PRK06107 111 MATLEA--------------GDEVIIPAPYWVSYPDMVLAN----DGTPVIVACPEEQGFKLTPEALEAAITP---RTRW 169 (402)
T ss_pred HHhcCC--------------CCEEEEecCCCcCHHHHHHHc----CCEEEEecCCcccCCCCCHHHHHhhcCc---CceE
Confidence 877654 788888777666655555444 455555542 256788877753 6788
Q ss_pred EEEcCCCCCCCCccC---HHHHHHHHHHc-CCEEEEecCcccccccCCCcc-cccccCCCCCccEEEecCcccccCCc--
Q 019931 256 VVTDSLFSMDGDFAP---MVELVKLRRKY-GFLLVLDDAHGTFVCGKNGGG-VAEQFNCERDVDICVGTLSKAAGCQG-- 328 (334)
Q Consensus 256 Vv~e~v~n~~G~~~p---L~~L~ela~k~-ga~LivDeAh~~Gv~G~~G~g-~~~~~~~~~~~Div~~SlsKa~G~~G-- 328 (334)
|++.+++||+|.+.+ +++|+++|+++ ++++|+||+|....+...... +.....-..+..|+++||||.||..|
T Consensus 170 v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlR 249 (402)
T PRK06107 170 LILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWR 249 (402)
T ss_pred EEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccc
Confidence 888899999998887 56778889998 999999999986444321111 11110101123588999999998777
Q ss_pred -cEEeeC
Q 019931 329 -GFIACR 334 (334)
Q Consensus 329 -G~i~~~ 334 (334)
||++++
T Consensus 250 iG~~~~~ 256 (402)
T PRK06107 250 IGYAAGP 256 (402)
T ss_pred eeeeecC
Confidence 888764
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.9e-16 Score=148.09 Aligned_cols=186 Identities=18% Similarity=0.190 Sum_probs=141.2
Q ss_pred CHHHHHHHHHhc---CCCCccccccCc--hHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHhhhhhhccCCCc
Q 019931 125 HPTIAKAAARHG---MGPRGSALICGY--TNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVGNIASLLAGDEK 197 (334)
Q Consensus 125 ~p~v~~a~~~~g---~g~~~sr~~~G~--~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~~~~~~~~~~~~ 197 (334)
+|+|++++..|- -|.++|-...|. ....++.++.+|++.|++ .++|+++|+++|..+|+.++...
T Consensus 14 ~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~-------- 85 (386)
T COG1104 14 DPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAY-------- 85 (386)
T ss_pred CHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhh--------
Confidence 789999765432 133333333343 356788999999999964 46667888999999998744321
Q ss_pred cCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHH
Q 019931 198 SFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMV 272 (334)
Q Consensus 198 ~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~ 272 (334)
....++..|++....|.++++.++... ..|.++.+.+.+ |+++|+++|++ +|.+|.+-.++|..|.+.|++
T Consensus 86 ~~~~~~~HIIts~iEH~aVl~~~~~Le-~~g~~Vtyl~V~~~G~v~~e~L~~al~~---~T~LVSim~aNnE~G~IQpI~ 161 (386)
T COG1104 86 RNAQKGKHIITSAIEHPAVLNTCRYLE-RQGFEVTYLPVDSNGLVDLEQLEEALRP---DTILVSIMHANNETGTIQPIA 161 (386)
T ss_pred hcccCCCeEEEcccccHHHHHHHHHHH-hcCCeEEEeCCCCCCeEcHHHHHHhcCC---CceEEEEEecccCeeecccHH
Confidence 011246678889999999999998773 337777777754 89999999985 799999999999999999999
Q ss_pred HHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCc-cEE
Q 019931 273 ELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQG-GFI 331 (334)
Q Consensus 273 ~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~G-G~i 331 (334)
+|.++|+++|+++++|.+|++|-+. .++. -.+|++..|-+|-.|+-| |++
T Consensus 162 ei~~i~k~~~i~fHvDAvQa~Gkip---------i~~~~~~vD~ls~SaHK~~GpkGiGaL 213 (386)
T COG1104 162 EIGEICKERGILFHVDAVQAVGKIP---------IDLEELGVDLLSFSAHKFGGPKGIGAL 213 (386)
T ss_pred HHHHHHHHcCCeEEEehhhhcCcee---------ccccccCcceEEeehhhccCCCceEEE
Confidence 9999999999999999999986431 2222 248999999999999866 544
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.8e-16 Score=149.86 Aligned_cols=156 Identities=20% Similarity=0.173 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||+++++++|.++++.++||+.|++.++.++.-+ +||.|++..+...+...++... |
T Consensus 24 g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~~-------------~gdeVi~p~~t~~~~~~ai~~~----G 86 (363)
T PF01041_consen 24 GPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGLG-------------PGDEVIVPAYTFPATASAILWA----G 86 (363)
T ss_dssp SHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTGG-------------TTSEEEEESSS-THHHHHHHHT----T
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCCC-------------cCceEecCCCcchHHHHHHHHh----c
Confidence 5788999999999999999999999999999999986532 4899999999888888888877 8
Q ss_pred cEEEEeeCC------CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcc
Q 019931 229 VEVFVYKHC------DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG 302 (334)
Q Consensus 229 ~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g 302 (334)
++++.++.+ |++++++++++ ++++|++.+.+ |.++|+++|.++|+++|++||.|.||++|..- .|+.
T Consensus 87 ~~pv~~Di~~~~~~id~~~~~~~i~~---~t~ai~~~h~~---G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~-~g~~ 159 (363)
T PF01041_consen 87 AEPVFVDIDPETLNIDPEALEKAITP---KTKAILVVHLF---GNPADMDAIRAIARKHGIPLIEDAAQAFGARY-KGRP 159 (363)
T ss_dssp -EEEEE-BETTTSSB-HHHHHHHHHT---TEEEEEEE-GG---GB---HHHHHHHHHHTT-EEEEE-TTTTT-EE-TTEE
T ss_pred cEEEEEeccCCcCCcCHHHHHHHhcc---CccEEEEecCC---CCcccHHHHHHHHHHcCCcEEEccccccCcee-CCEe
Confidence 999988743 89999999986 78888877655 77899999999999999999999999987531 1221
Q ss_pred cccccCCCCCccEEEecC--ccccc-CCccEEeeC
Q 019931 303 VAEQFNCERDVDICVGTL--SKAAG-CQGGFIACR 334 (334)
Q Consensus 303 ~~~~~~~~~~~Div~~Sl--sKa~G-~~GG~i~~~ 334 (334)
.|-. -|+.+.|| +|.+. +.||+|+++
T Consensus 160 ----~G~~--gd~~~fSf~~~K~i~~geGG~v~~~ 188 (363)
T PF01041_consen 160 ----VGSF--GDIAIFSFHPTKIITTGEGGAVVTN 188 (363)
T ss_dssp ----TTSS--SSEEEEESSTTSSS-SSS-EEEEES
T ss_pred ----ccCC--CCceEecCCCCCCCcCCCCeeEEec
Confidence 1211 27888898 69985 468998864
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=152.39 Aligned_cols=204 Identities=15% Similarity=0.102 Sum_probs=141.0
Q ss_pred ceeEEEeecCcc-CCCCCCH---HHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHH
Q 019931 108 FKRLLLFSGNDY-LGLSSHP---TIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVI 182 (334)
Q Consensus 108 g~~~l~f~sn~y-Lgl~~~p---~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai 182 (334)
|..++++.+.+. .+|.++. .+.+++.+. ..|... ++......+||++++++++.++++++++|++|+..++
T Consensus 35 g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g~~~----Y~~~~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~ 110 (460)
T PRK13238 35 GYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRGDEA----YAGSRSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILF 110 (460)
T ss_pred CCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhCCcc----cCCCCCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHH
Confidence 478899988774 5787755 455544332 233322 2223345889999999999999999999999999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC---------------CCHHHHHHHHh
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH---------------CDMSHLKTLLS 247 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~---------------~D~~~Le~~l~ 247 (334)
.+++++ || |+...+.+.+....+.+. |++++.++. .|+++|+++++
T Consensus 111 ~all~p--------------GD-Vii~~p~~~~~~~~i~~~----G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~ 171 (460)
T PRK13238 111 PVLIKK--------------GD-VVPSNYHFDTTRAHIELN----GATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIE 171 (460)
T ss_pred HHhCCC--------------CC-EEccCCcccchHHHHHHc----CCEEEEEeccccccccccccccCCcCHHHHHHHHh
Confidence 998875 77 555555555555556666 777776542 47899999997
Q ss_pred cCC-CCcEEEEEcCCCCCCC-CccC---HHHHHHHHHHcCCEEEEecCcccc-c-ccC------CCccccccc-CCCCCc
Q 019931 248 CCT-MRKKVVVTDSLFSMDG-DFAP---MVELVKLRRKYGFLLVLDDAHGTF-V-CGK------NGGGVAEQF-NCERDV 313 (334)
Q Consensus 248 ~~~-~~~~lVv~e~v~n~~G-~~~p---L~~L~ela~k~ga~LivDeAh~~G-v-~G~------~G~g~~~~~-~~~~~~ 313 (334)
+.. +++++|++++++|++| .+.+ +++|+++|++||++||+|++|..+ . ++. .+..+.+.. -+....
T Consensus 172 ~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~ 251 (460)
T PRK13238 172 EVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYA 251 (460)
T ss_pred hcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccC
Confidence 542 3689999999999987 6655 678999999999999999998642 2 211 011111000 001235
Q ss_pred cEEEecCcccc-cCCccEEeeC
Q 019931 314 DICVGTLSKAA-GCQGGFIACR 334 (334)
Q Consensus 314 Div~~SlsKa~-G~~GG~i~~~ 334 (334)
|+++.|..|.+ +..||+|+++
T Consensus 252 D~~~~Sg~K~g~~~~GG~i~~~ 273 (460)
T PRK13238 252 DGLTMSAKKDAMVNIGGLLCFR 273 (460)
T ss_pred cEEEEecccCCCCcceeEEEcC
Confidence 78888988864 5579998863
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-15 Score=144.18 Aligned_cols=182 Identities=20% Similarity=0.169 Sum_probs=132.2
Q ss_pred eeEEEeecC-ccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhh
Q 019931 109 KRLLLFSGN-DYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGN 187 (334)
Q Consensus 109 ~~~l~f~sn-~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~ 187 (334)
..+++|+.| +.+ .+|.+++++.+.-.... ++. ....|+++++++++. ++++++++++|+..++..+ .
T Consensus 8 ~~~i~l~~~~np~---~p~~~~~a~~~~~~~~~------~yp-~~~~l~~~ia~~~~~-~I~vt~G~~~al~~~~~~~-~ 75 (311)
T PRK08354 8 EGLIDFSASVNPY---PPEWLDEMFERAKEISG------RYT-YYEWLEEEFSKLFGE-PIVITAGITEALYLIGILA-L 75 (311)
T ss_pred cceeEecCCCCCC---CCHHHHHHHHHHHHHhh------cCC-ChHHHHHHHHHHHCC-CEEECCCHHHHHHHHHHhh-C
Confidence 468899998 443 25788887765322111 111 236789999999984 5777788888887766433 2
Q ss_pred hhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCC
Q 019931 188 IASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGD 267 (334)
Q Consensus 188 ~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~ 267 (334)
+ ||.|++..+.+..+...++.. |.+++.++ .|++.|++.++ ++++|++.+|+||+|.
T Consensus 76 ~--------------gd~vlv~~P~y~~~~~~~~~~----g~~~~~~~-~d~~~l~~~~~----~~~~vi~~~P~NPTG~ 132 (311)
T PRK08354 76 R--------------DRKVIIPRHTYGEYERVARFF----AARIIKGP-NDPEKLEELVE----RNSVVFFCNPNNPDGK 132 (311)
T ss_pred C--------------CCeEEEeCCCcHHHHHHHHHc----CCEEeecC-CCHHHHHHhhc----CCCEEEEecCCCCCCC
Confidence 3 788888889988888877776 78887664 57888888775 3467777888999999
Q ss_pred ccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEee
Q 019931 268 FAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 268 ~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
+.+ +++|+++|+++|+++|+||+|...+++. .. ..++..|+++||||+||..| ||+++
T Consensus 133 ~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~--~~------~~~~~vi~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 133 FYNFKELKPLLDAVEDRNALLILDEAFIDFVKKP--ES------PEGENIIKLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred ccCHHHHHHHHHHhhhcCcEEEEeCcchhccccc--cc------cCCCcEEEEeccHhhcCCccceeeeeee
Confidence 887 5667788899999999999998654432 11 11233589999999999877 88875
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.3e-16 Score=149.00 Aligned_cols=156 Identities=16% Similarity=0.217 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+...++|+++++++|.++++.++||+.|+..++++|.- ++||.|++......+..+.+... |
T Consensus 33 G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~i-------------g~GDeVI~ps~TfvATan~i~~~----G 95 (374)
T COG0399 33 GPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAI-------------GPGDEVIVPSFTFVATANAVLLV----G 95 (374)
T ss_pred ChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcCC-------------CCCCEEEecCCchHHHHHHHHHc----C
Confidence 477799999999999999999999999999999997651 35899999999999999998888 8
Q ss_pred cEEEEeeCC------CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcc
Q 019931 229 VEVFVYKHC------DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG 302 (334)
Q Consensus 229 ~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g 302 (334)
+++++++-+ |++.||+.|++ +||+|+.-+.+ |..+++++|.+||++||++||.|.||++|..- .|+.
T Consensus 96 a~PVFvDid~~T~nid~~~ie~aIt~---~tKAIipVhl~---G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y-~gk~ 168 (374)
T COG0399 96 AKPVFVDIDPDTLNIDPDLIEAAITP---RTKAIIPVHLA---GQPCDMDAIMALAKRHGLPVIEDAAQAHGATY-KGKK 168 (374)
T ss_pred CeEEEEecCCcccCCCHHHHHHHccc---CCeEEEEehhc---cCCCCHHHHHHHHHHcCCeEEEEcchhccCee-cCcc
Confidence 999888743 89999999986 68999877766 66999999999999999999999999988541 1322
Q ss_pred cccccCCCCCccEEEecC--cccccC-CccEEeeC
Q 019931 303 VAEQFNCERDVDICVGTL--SKAAGC-QGGFIACR 334 (334)
Q Consensus 303 ~~~~~~~~~~~Div~~Sl--sKa~G~-~GG~i~~~ 334 (334)
+. .+| |+.+.|| .|-+++ .||+|+++
T Consensus 169 vG-t~G-----d~~~fSF~~~K~ittgEGGav~tn 197 (374)
T COG0399 169 VG-SFG-----DIGAFSFHATKNLTTGEGGAVVTN 197 (374)
T ss_pred cc-ccc-----ceEEEEecCCCCccccCceEEEeC
Confidence 11 122 5777788 899965 69999864
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=8e-16 Score=149.73 Aligned_cols=155 Identities=23% Similarity=0.205 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+...+||++|+++. .+++++++||++|+..++.+++++ ||.|++....|......+.......|
T Consensus 50 ~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~~--------------Gd~Vl~~~~~y~~~~~~~~~~l~~~G 114 (366)
T PRK07582 50 NPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLRP--------------GDTVVVPADGYYQVRALAREYLAPLG 114 (366)
T ss_pred CccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcCC--------------CCEEEEeCCCcHhHHHHHHHHHhcCe
Confidence 366799999999999 678999999999999999888764 77777765555554433322111237
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
++++.++.++... ..+ +++++|++++++||+|.+.|+++|.++|+++|+++++|++|... +|. . .
T Consensus 115 ~~v~~v~~~~~~~--~~~----~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~-~~~---~-----p 179 (366)
T PRK07582 115 VTVREAPTAGMAE--AAL----AGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATP-LGQ---R-----P 179 (366)
T ss_pred EEEEEECCCChHH--Hhc----cCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCc-ccc---C-----c
Confidence 8888888765432 222 37899999999999999999999999999999999999999743 221 1 1
Q ss_pred CCCCccEEEecCcccccC----CccEEee
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+..++||++.|++|++++ .+||+++
T Consensus 180 ~~~g~Divv~S~sK~l~G~~g~~~G~v~~ 208 (366)
T PRK07582 180 LELGADLVVASDTKALTGHSDLLLGYVAG 208 (366)
T ss_pred hhcCCcEEEecccccccCCCCeeEEEEEc
Confidence 123468999999999965 2477765
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=147.94 Aligned_cols=197 Identities=18% Similarity=0.187 Sum_probs=146.9
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHh---cCCCCccc-cccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARH---GMGPRGSA-LICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVI 182 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~---g~g~~~sr-~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai 182 (334)
.-|+|..+.. ..+|+|.+|+++| ..|.+.++ +.....+..++.++.+|++.|++ +++|++++|++|..++
T Consensus 44 ~vyld~~at~----p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl 119 (428)
T KOG1549|consen 44 PVYLDNQATG----PMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVL 119 (428)
T ss_pred cEEEecCcCC----CCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHH
Confidence 4566655544 2589999998775 23444445 22222344788999999999964 4566678899999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVV 257 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv 257 (334)
+.+... +++ +....|++-...|.++..+++..... +.+++.++.+ |.+.+++.|+. +|++|.
T Consensus 120 ~~v~~~-----~~~----~~~k~iitl~~eH~~v~~s~~~l~~~-g~~Vt~lpv~~~~~~d~~~~~~~i~~---~T~lv~ 186 (428)
T KOG1549|consen 120 KGVARF-----FGD----KTKKHIITLQTEHPCVLDSCRALQEE-GLEVTYLPVEDSGLVDISKLREAIRS---KTRLVS 186 (428)
T ss_pred HHhhcc-----ccc----cccceEEEecccCcchhHHHHHHHhc-CeEEEEeccCccccccHHHHHHhcCC---CceEEE
Confidence 887642 100 01227888888999999999876433 6777777643 67777777764 899999
Q ss_pred EcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCc-cEE
Q 019931 258 TDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQG-GFI 331 (334)
Q Consensus 258 ~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~G-G~i 331 (334)
+.+++|+.|.+.|+++|.++|+++|+.+++|.||+.|.. ..++. -++|++..+.+|-||+.| |++
T Consensus 187 I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i---------~vDV~eln~D~~s~s~HK~ygp~~iGaL 253 (428)
T KOG1549|consen 187 IMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKI---------PVDVQELNADFLSISAHKIYGPPGIGAL 253 (428)
T ss_pred EEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCc---------cccHHHcCchheeeecccccCCCcceEE
Confidence 999999999999999999999999999999999998743 12232 567999999999999976 554
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=146.70 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=121.7
Q ss_pred chHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHh-hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc
Q 019931 148 YTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVG-NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT 226 (334)
Q Consensus 148 ~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~-~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~ 226 (334)
..+...++|+++++++|.+.+++++||++|+..++.++. . ++|.|++..+.|.+....+...
T Consensus 16 ~~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~~--------------~gd~vl~~~~~~~~~~~~~~~~--- 78 (352)
T cd00616 16 LGPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGIG--------------PGDEVIVPSFTFVATANAILLL--- 78 (352)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCC--------------CCCEEEeCCcchHHHHHHHHHc---
Confidence 346789999999999999999999999999999998873 3 3788999999999988777665
Q ss_pred CCcEEEEeeC------CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCC
Q 019931 227 KMVEVFVYKH------CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNG 300 (334)
Q Consensus 227 ~g~~v~~~~~------~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G 300 (334)
|.+++.++. .|+++|++++++ ++++|++.+ ++|.+.|+++|.++|+++|++||+|++|++|.... +
T Consensus 79 -g~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~-~ 150 (352)
T cd00616 79 -GATPVFVDIDPDTYNIDPELIEAAITP---RTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYK-G 150 (352)
T ss_pred -CCeEEEEecCCCcCCcCHHHHHHhcCc---CCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeEC-C
Confidence 788877753 278888888753 678887654 57889999999999999999999999999875421 1
Q ss_pred cccccccCCCCCccEEEecCc--ccccC-CccEEee
Q 019931 301 GGVAEQFNCERDVDICVGTLS--KAAGC-QGGFIAC 333 (334)
Q Consensus 301 ~g~~~~~~~~~~~Div~~Sls--Ka~G~-~GG~i~~ 333 (334)
. ..+ ...|+.+.||+ |.++. .||++++
T Consensus 151 ~----~~~--~~~d~~~~S~~~~K~~~~~~gg~~~~ 180 (352)
T cd00616 151 R----KVG--TFGDAGAFSFHPTKNLTTGEGGAVVT 180 (352)
T ss_pred E----Ecc--cCcceeEEcCCCCCCCcccCceEEEE
Confidence 1 111 11367788877 99953 6787765
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=146.30 Aligned_cols=206 Identities=14% Similarity=0.036 Sum_probs=137.0
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAANMAVIV 183 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~An~~ai~ 183 (334)
|+.+++|+.|+ ..+..++.+++++++...-...+....|...+.+.+.+.+++.+| .+++++++++.+|+..++.
T Consensus 23 ~~~~i~l~~~~-p~~~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~ 101 (374)
T PRK05839 23 EYKGLDLTIGE-PQFETPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQ 101 (374)
T ss_pred CCCeEEcCCCC-CCCCCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHH
Confidence 47999999986 446667888888776433223344445655666667666666655 3456777777888877777
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEE
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVT 258 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~ 258 (334)
+++.. +++|.|++..+.+..+...++.. |++++.++.. +++..+..+ .++++|++
T Consensus 102 ~~~~~------------~~gd~vlv~~P~y~~~~~~~~~~----g~~v~~v~~~~~~~~~~d~~~~~~----~~~k~v~i 161 (374)
T PRK05839 102 FVLFD------------KQNPTIAYPNPFYQIYEGAAIAS----RAKVLLMPLTKENDFTPSLNEKEL----QEVDLVIL 161 (374)
T ss_pred HHhcC------------CCCCEEEECCCCchhhHHHHHhc----CCEEEEeecccccCCcCCcchhhh----ccccEEEE
Confidence 66421 13788888888887777776655 8888888753 122222222 25788888
Q ss_pred cCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCccccccc---CC-CCCccEEEecCcccccCCc---
Q 019931 259 DSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQF---NC-ERDVDICVGTLSKAAGCQG--- 328 (334)
Q Consensus 259 e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~---~~-~~~~Div~~SlsKa~G~~G--- 328 (334)
.+++||+|.+.+ +++|+++|+++|++||+||+|..-..+.....+.... +. ..+.-|+++||||+||..|
T Consensus 162 ~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRi 241 (374)
T PRK05839 162 NSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRS 241 (374)
T ss_pred eCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCcccee
Confidence 899999999887 6678888999999999999998632211111111100 00 1122488999999998766
Q ss_pred cEEeeC
Q 019931 329 GFIACR 334 (334)
Q Consensus 329 G~i~~~ 334 (334)
||++++
T Consensus 242 G~ii~~ 247 (374)
T PRK05839 242 GFIAGD 247 (374)
T ss_pred EEEecC
Confidence 898764
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-15 Score=147.24 Aligned_cols=197 Identities=18% Similarity=0.161 Sum_probs=134.0
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC-C---CCccccccCchHHHHHHHHHHHhHhC--------CCcEEEeccHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM-G---PRGSALICGYTNYHRLLESCLADLKK--------KEDCLLCPTGFA 176 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~-g---~~~sr~~~G~~~~~~~LE~~La~~~g--------~e~alv~~sG~~ 176 (334)
..++||+.++ ..+..++.+++++.++-. . ...+....|. .++++.++++++ .+++++++++++
T Consensus 33 ~~~~~l~~g~-p~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~----~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~ 107 (394)
T PRK06836 33 DNVFDFSLGN-PSVPPPAAVKEALRELAEEEDPGLHGYMPNAGY----PEVREAIAESLNRRFGTPLTADHIVMTCGAAG 107 (394)
T ss_pred CCeEEecCcC-CCCCCCHHHHHHHHHHHhcCCcCcccCCCCCCC----HHHHHHHHHHHHHHhCCCCCcCcEEEeCChHH
Confidence 4678997764 455557788887765422 1 1222233444 445555555542 356778888889
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCC
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCT 250 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~ 250 (334)
++..++.+++.+ ||.|++..+.+......+... |.+++.++.+ |+++|++++++
T Consensus 108 al~~~~~~l~~~--------------gd~Vli~~p~~~~~~~~~~~~----g~~v~~v~~~~~~~~~d~~~l~~~~~~-- 167 (394)
T PRK06836 108 ALNVALKAILNP--------------GDEVIVFAPYFVEYRFYVDNH----GGKLVVVPTDTDTFQPDLDALEAAITP-- 167 (394)
T ss_pred HHHHHHHHhcCC--------------CCEEEEcCCCCccHHHHHHHc----CCEEEEEecCCccCcCCHHHHHhhcCc--
Confidence 998888888764 777777777776655554444 7888887642 67888888854
Q ss_pred CCcEEEEEcCCCCCCCCccC---HHHHHHHHHH------cCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCc
Q 019931 251 MRKKVVVTDSLFSMDGDFAP---MVELVKLRRK------YGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLS 321 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k------~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sls 321 (334)
++++|++.+++||+|.+.| +++|+++|++ ||+++|+||+|....++ +......... .+..|+++|||
T Consensus 168 -~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~--~~~~~~~~~~-~~~~i~~~S~S 243 (394)
T PRK06836 168 -KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYD--GAEVPYIFKY-YDNSIVVYSFS 243 (394)
T ss_pred -CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccC--CCCCCChHHc-cCcEEEEecch
Confidence 6888888899999999988 6677888998 89999999999865443 2111111111 12358999999
Q ss_pred ccccCCc---cEEeeC
Q 019931 322 KAAGCQG---GFIACR 334 (334)
Q Consensus 322 Ka~G~~G---G~i~~~ 334 (334)
|.||..| ||++++
T Consensus 244 K~~~~pGlRiG~~~~~ 259 (394)
T PRK06836 244 KSLSLPGERIGYIAVN 259 (394)
T ss_pred hhccCcceeeEEEecC
Confidence 9999766 888763
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=151.35 Aligned_cols=195 Identities=17% Similarity=0.093 Sum_probs=135.6
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhC----C-CcEEEeccHHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKK----K-EDCLLCPTGFAANMAVIV 183 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g----~-e~alv~~sG~~An~~ai~ 183 (334)
...++|++++ ......|.+.+++++.......+....| ..+|.+.++++++ . +++++++++.+|+..++.
T Consensus 85 ~~~i~L~~g~-p~~~~~p~~~~~~~~~~~~~~~Y~~~~g----~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~ 159 (431)
T PRK15481 85 TPLHDLAGGN-PDPQRLPDLSRYFARLSRTPRLYGDAPV----SPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLC 159 (431)
T ss_pred chhhhhhcCC-CChhHhHHHHHHHHHhhhhhhhcCCcCC----CHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHH
Confidence 3466777764 3444456677766653222111222223 3456677777754 2 367777888999999999
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC----CCHHHHHHHHhcCCCCcEEEEEc
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH----CDMSHLKTLLSCCTMRKKVVVTD 259 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~----~D~~~Le~~l~~~~~~~~lVv~e 259 (334)
+++.+ ||.|++..+.+......++.. |++++.++. .|+++|+++++. ++++|++.
T Consensus 160 ~l~~p--------------gd~Vlv~~P~y~~~~~~~~~~----g~~~~~v~~~~~g~~~~~l~~~~~~---~~k~i~~~ 218 (431)
T PRK15481 160 AHLLP--------------GDSVAVEDPCFLSSINMLRYA----GFSASPVSVDAEGMQPEKLERALAQ---GARAVILT 218 (431)
T ss_pred HhCCC--------------CCEEEEeCCCcHHHHHHHHHc----CCeEEeeccCCCCCCHHHHHHHHhc---CCCEEEEC
Confidence 88875 788998888888887777766 888888764 368888888864 56776665
Q ss_pred -CCCCCCCCccCHH---HHHHHHHHc-CCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEE
Q 019931 260 -SLFSMDGDFAPMV---ELVKLRRKY-GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFI 331 (334)
Q Consensus 260 -~v~n~~G~~~pL~---~L~ela~k~-ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i 331 (334)
+++||+|.+.+.+ +|.++|+++ +++||+||+|....+.+ .... .....+..|+++||||+|| .| ||+
T Consensus 219 p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~-~~~~---~~~~~~~vi~~~SfSK~~~-~GlRiG~~ 293 (431)
T PRK15481 219 PRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSP-YHSV---IPQTTQRWALIRSVSKALG-PDLRLAFV 293 (431)
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCC-CCCC---CcCCCCCEEEEeeeccccC-CCceeEEE
Confidence 9999999999865 899999999 99999999998643221 0111 1112223489999999999 66 888
Q ss_pred eeC
Q 019931 332 ACR 334 (334)
Q Consensus 332 ~~~ 334 (334)
+++
T Consensus 294 i~~ 296 (431)
T PRK15481 294 ASD 296 (431)
T ss_pred eCC
Confidence 764
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=146.06 Aligned_cols=190 Identities=13% Similarity=0.051 Sum_probs=135.6
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCC-CCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMG-PRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAV 185 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g-~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al 185 (334)
+.+++|+.|+. .+..+|.+++++.++-.. ...+ ... -..+|++++|++++. +++++++++++++..++.++
T Consensus 24 ~~~i~l~~~~~-~~~~~~~~~~a~~~~~~~~~~~y----~~~-~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l 97 (353)
T PRK05387 24 AKLIKLNTNEN-PYPPSPKVLEAIRAALGDDLRLY----PDP-NADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAF 97 (353)
T ss_pred cceeeccCCCC-CCCCCHHHHHHHHHHhhhhhhcC----CCC-cHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh
Confidence 67899999863 465678888887654321 1111 111 236899999999985 45788888899999999988
Q ss_pred hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcC
Q 019931 186 GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDS 260 (334)
Q Consensus 186 ~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~ 260 (334)
+.+ ||.|++..+.|.......... |.+++.++.. |+++++ + ++++|++.+
T Consensus 98 ~~~--------------gd~vlv~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~---~----~~~~v~~~~ 152 (353)
T PRK05387 98 FNH--------------DRPLLFPDITYSFYPVYAGLY----GIPYEEIPLDDDFSIDVEDYL---R----PNGGIIFPN 152 (353)
T ss_pred cCC--------------CCEEEEeCCCHHHHHHHHHHc----CCEEEEeecCCCCCCCHHHHH---h----cCCEEEEeC
Confidence 765 788888888876665555555 7787777643 455554 2 346788889
Q ss_pred CCCCCCCccCHHHHHHHHHHc-CCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 261 LFSMDGDFAPMVELVKLRRKY-GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 261 v~n~~G~~~pL~~L~ela~k~-ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
++||+|.+.|.+++.++++++ ++++|+||+|.. ++. ..........+ ..|+++||||.||..| ||++++
T Consensus 153 P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~--~~~--~~~~~~~~~~~-~~i~~~S~SK~~~~~GlR~G~~~~~ 225 (353)
T PRK05387 153 PNAPTGIALPLAEIERILAANPDSVVVIDEAYVD--FGG--ESAIPLIDRYP-NLLVVQTFSKSRSLAGLRVGFAIGH 225 (353)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccc--cCC--cchHHHHhhCC-CEEEEEehhHhhcchhhhceeeecC
Confidence 999999999999999999886 999999999963 432 11111111112 3599999999999877 998764
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-15 Score=148.25 Aligned_cols=205 Identities=13% Similarity=0.079 Sum_probs=133.8
Q ss_pred ceeEEEeecCc--cCCCCCCHHHHHHHHHhcC--CCCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHHHH
Q 019931 108 FKRLLLFSGND--YLGLSSHPTIAKAAARHGM--GPRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAANM 179 (334)
Q Consensus 108 g~~~l~f~sn~--yLgl~~~p~v~~a~~~~g~--g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~An~ 179 (334)
|++++++...+ +.++..++.+++++.+... ...++....|...+.+.+.+.+.+..| .+++++++++.+|+.
T Consensus 31 g~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~ 110 (433)
T PRK06855 31 GVKITWENIGDPIAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIA 110 (433)
T ss_pred cccccccccCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHH
Confidence 36777775544 3478888888887766432 222344445555555555555544434 246778888888888
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCTMR 252 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~~~ 252 (334)
.++. ++.+ ||.|++..+.+.......... .+.+++.++. .|+++|+++++.. ++
T Consensus 111 ~~~~-l~~~--------------Gd~Vlv~~P~Y~~~~~~~~~~---~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~-~~ 171 (433)
T PRK06855 111 KIYG-LLRR--------------EARVIGPSPAYSTHSSAEAAH---AGYPPVTYRLDPENNWYPDLDDLENKVKYN-PS 171 (433)
T ss_pred HHHH-hcCC--------------CCeEEEeCCCCchHHHHHHHh---cCCeEEEEecccccCCCCCHHHHHHHHhcC-CC
Confidence 7774 5554 788888877776543221211 1566665542 2789999988642 25
Q ss_pred cEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCC-ccEEEecCcccccCCc
Q 019931 253 KKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERD-VDICVGTLSKAAGCQG 328 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~-~Div~~SlsKa~G~~G 328 (334)
++++++.+++||+|.+.+ +++|+++|++||++||.||+|....+.. ........+.++ ..|+++||||+|++.|
T Consensus 172 ~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~--~~~~sl~~~~~~~~~I~~~S~SK~~~~pG 249 (433)
T PRK06855 172 IAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNG--KKTVPLSEVIGDVPGIALKGISKELPWPG 249 (433)
T ss_pred ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC--CCCCCHHHHcCcCCeEEEecCccccCCCc
Confidence 677777799999999988 6678889999999999999998765532 111111112122 2389999999998766
Q ss_pred ---cEEee
Q 019931 329 ---GFIAC 333 (334)
Q Consensus 329 ---G~i~~ 333 (334)
||+++
T Consensus 250 lRiG~ii~ 257 (433)
T PRK06855 250 SRCGWIEV 257 (433)
T ss_pred ceEEEEEE
Confidence 88875
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-16 Score=147.53 Aligned_cols=200 Identities=18% Similarity=0.137 Sum_probs=144.6
Q ss_pred EEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhh
Q 019931 112 LLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASL 191 (334)
Q Consensus 112 l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~ 191 (334)
++|.|.++-|- +|++++++.+...+ ..-.+|..+...++|+++++++|++.++|++|||+||+.+|.+.+++
T Consensus 2 ~~f~SDn~~g~--~~~m~eam~~a~~~---~~~~YG~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~~--- 73 (342)
T COG2008 2 IDFRSDNVAGP--TPEMREALAAANAV---GDDVYGEDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQP--- 73 (342)
T ss_pred CccccCccCCC--CHHHHHHHHhcccc---CCCCCCCCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcCC---
Confidence 57888876654 89999988776522 12378999999999999999999988999999999999999999875
Q ss_pred ccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC----CCHHHHHHHHhcCC---CCcEEEEEcCCCCC
Q 019931 192 LAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH----CDMSHLKTLLSCCT---MRKKVVVTDSLFSM 264 (334)
Q Consensus 192 ~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~----~D~~~Le~~l~~~~---~~~~lVv~e~v~n~ 264 (334)
++.|++....|......-.......+.++...+- .++++++..++... ..+.+++.++..+.
T Consensus 74 -----------~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te 142 (342)
T COG2008 74 -----------GESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATE 142 (342)
T ss_pred -----------CCeEEEeccccceecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCC
Confidence 7889999988876543222222122344444442 38999999887521 35667777777767
Q ss_pred CCCccCH---HHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCcc-EEee
Q 019931 265 DGDFAPM---VELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGG-FIAC 333 (334)
Q Consensus 265 ~G~~~pL---~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~GG-~i~~ 333 (334)
.|.+.|+ ++|.++||++|+.|++|.|.-+..+-.-| .. .......+|++..++||..+..+| +|++
T Consensus 143 ~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg--~~-~~~~~~~~D~v~~~~tK~g~~~~gAiv~g 212 (342)
T COG2008 143 GGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALG--VA-LKTIKSYVDSVSFCLTKGGGAPVGAIVFG 212 (342)
T ss_pred CceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC--CC-HHHHHhhCCEEEEecccCCcceeeeEEEc
Confidence 8999995 56788999999999999987543321111 11 112236789999999999987654 4444
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-15 Score=147.21 Aligned_cols=195 Identities=19% Similarity=0.162 Sum_probs=136.3
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAV 185 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al 185 (334)
+.++|+|..|. -.+..+|.+++++.+... . ++ +.. +...+|+++++++++.+ .+++++++++++..++.++
T Consensus 51 ~~~~i~l~~n~-~p~~~~~~v~~a~~~~~~-~--~~--Yp~-~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~ 123 (380)
T PLN03026 51 PEDIVKLDANE-NPYGPPPEVLEALGNMKF-P--YV--YPD-PESRRLRAALAEDSGLESENILVGCGADELIDLLMRCV 123 (380)
T ss_pred ccceEEccCCC-CCCCCCHHHHHHHHhhHh-h--cc--CCC-CCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHh
Confidence 36889999985 235567888887764211 0 11 111 22478999999999854 4566666677888888777
Q ss_pred hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcC
Q 019931 186 GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDS 260 (334)
Q Consensus 186 ~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~ 260 (334)
+.+ ||.|++..+.+......++.. |++++.++.+ |+++|+++++. +++++|++++
T Consensus 124 ~~~--------------gd~Vlv~~P~y~~y~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~~~~--~~~~~v~l~~ 183 (380)
T PLN03026 124 LDP--------------GDKIIDCPPTFGMYVFDAAVN----GAEVIKVPRTPDFSLDVPRIVEAVET--HKPKLLFLTS 183 (380)
T ss_pred cCC--------------CCEEEEcCCChHHHHHHHHHc----CCEEEEeecCCCCCcCHHHHHHHHhc--cCCcEEEEeC
Confidence 654 777887777766555444444 7888877642 67888887732 3688999999
Q ss_pred CCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 261 LFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 261 v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
++||+|.+.|.+++.++++.. +++|+||+|..... .+... .... ..+..|++.||||+||..| ||++++
T Consensus 184 P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~--~~~~~-~~~~-~~~~viv~~SfSK~~glaGlRiGy~~~~ 255 (380)
T PLN03026 184 PNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFST--QESRM-KWVK-KYDNLIVLRTFSKRAGLAGLRVGYGAFP 255 (380)
T ss_pred CCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcC--CcchH-HHHH-hCCCEEEEecchHhhcCccccceeeecC
Confidence 999999999999999999865 89999999975322 12111 1111 1123589999999999888 998864
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=147.34 Aligned_cols=194 Identities=15% Similarity=0.122 Sum_probs=137.8
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHHh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al~ 186 (334)
+.+++|..|. -.+..+|.+++++.+.-.... + ++... ..+|++.+++++|. +++++++++++++..++.+++
T Consensus 43 ~~~i~l~~~~-~~~~~~~~~~~a~~~~~~~~~--~--Y~~~~-~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~ 116 (370)
T PRK09105 43 EGAVFLNANE-CPLGPSPAARDAAARSAALSG--R--YDLEL-EDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFT 116 (370)
T ss_pred CCcEEecCCC-CCCCCCHHHHHHHHHHHHHhc--C--CCCch-HHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHc
Confidence 5677888876 356678999997765421111 1 22223 57899999999884 567888888999999998887
Q ss_pred hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCC
Q 019931 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSL 261 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v 261 (334)
++ ||.|++..+.|......++.. |.+++.++.. |++.+++. .+++++|++.++
T Consensus 117 ~~--------------gd~Vli~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~----~~~~~~v~l~nP 174 (370)
T PRK09105 117 SP--------------TAGLVTADPTYEAGWRAADAQ----GAPVAKVPLRADGAHDVKAMLAA----DPNAGLIYICNP 174 (370)
T ss_pred CC--------------CCEEEEeCCChHHHHHHHHHc----CCeEEEecCCCCCCCCHHHHHhc----CCCCCEEEEeCC
Confidence 64 788888888888877776666 7888877642 55555543 136788888999
Q ss_pred CCCCCCccCHHHHHHHHHH--cCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 262 FSMDGDFAPMVELVKLRRK--YGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 262 ~n~~G~~~pL~~L~ela~k--~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
+||+|.+.+.++|.++++. ++++||+||+|.. ++. +......... .+.-|++.||||+||..| ||++++
T Consensus 175 ~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~--f~~-~~s~~~~~~~-~~~vi~~~SfSK~~g~~GlRiG~~v~~ 248 (370)
T PRK09105 175 NNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIH--FSD-APSVVDLVAQ-RKDLIVLRTFSKLYGMAGMRLGLAAAR 248 (370)
T ss_pred CCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHH--hcc-CcchHHHHhh-CCCEEEEecccHhhcCCccceeeeecC
Confidence 9999999998888887764 4899999999964 322 1111111111 122378899999999988 998864
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=147.05 Aligned_cols=198 Identities=16% Similarity=0.088 Sum_probs=135.0
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~ 186 (334)
..+++|+.|.. .+..+|.+++++.+....... ++.... .+|++.++++++.+ ++++++++++++..++.+++
T Consensus 36 ~~~i~l~~~~~-~~~~~~~~~~al~~~~~~~~~----Y~~~~g-~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~ 109 (371)
T PRK05166 36 PRIAKLGSNEN-PLGPSPAVRRAFADIAELLRL----YPDPQG-RALREAIAARTGVPADRIILGNGSEDLIAVICRAVL 109 (371)
T ss_pred cceEEcCCCCC-CCCCCHHHHHHHHHHHHHhhc----CCCCcH-HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhc
Confidence 57899998853 245678888877653211111 111122 37999999999853 46666777778877877776
Q ss_pred hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCC
Q 019931 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSL 261 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v 261 (334)
++ ||.|++..+.+......++.. |.+++.++.. |++++++.+++ ++++|++.++
T Consensus 110 ~~--------------gd~vli~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~~~l~~~~~~---~~~~v~l~~p 168 (371)
T PRK05166 110 RP--------------GDRVVTLYPSFPLHEDYPTMM----GARVERVTVTPDLGFDLDALCAAVAR---APRMLMFSNP 168 (371)
T ss_pred CC--------------CCEEEEcCCChHHHHHHHHHc----CCeEEEeecCCCCCCCHHHHHHhhhc---CCCEEEEeCC
Confidence 54 788888888777666555555 7888777653 68888888764 5788889999
Q ss_pred CCCCCCccCHHHHHHHHHH--cCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEee
Q 019931 262 FSMDGDFAPMVELVKLRRK--YGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 262 ~n~~G~~~pL~~L~ela~k--~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
+||+|.+.|.+++.++++. .++++|+||+|.....+...........-..+..|+++||||.||..| ||+++
T Consensus 169 ~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~ 245 (371)
T PRK05166 169 SNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLV 245 (371)
T ss_pred CCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeec
Confidence 9999999998777776664 478999999998654332111111111111112488999999999877 89653
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=149.26 Aligned_cols=156 Identities=12% Similarity=0.066 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||++++++.|.+.+++|+||+.|+.+++.++.++ ||.|++....++.............|
T Consensus 63 ~P~~~~lE~~la~leg~~~av~~sSG~aAi~~al~all~~--------------GD~Vl~~~~~yg~t~~~~~~~~~~~G 128 (384)
T PRK06434 63 NPTVQAFEEKYAVLENAEHALSFSSGMGAITSAILSLIKK--------------GKRILSISDLYGQTFYFFNKVLKTLG 128 (384)
T ss_pred ChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCC--------------CCEEEEecCccchHHHHHHHHHHhcC
Confidence 4778999999999999999999999999999999988764 77777654433333322211111237
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
++++.++.++.+.++ +.. .++++|++|++.|+++.++|+++|.++|++++ +++|.+++.+..++ .
T Consensus 129 i~v~fvd~~~~~~~~--l~~--~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~---------p 193 (384)
T PRK06434 129 IHVDYIDTDRLNSLD--FDP--SNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQN---------P 193 (384)
T ss_pred cEEEEECCCChhhee--ecC--CCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcccCC---------c
Confidence 888888876555554 322 36899999999999999999999999999998 56799987654322 2
Q ss_pred CCCCccEEEecCcccccC----CccEEee
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+..++|+++.|.+|.+++ .||+|++
T Consensus 194 l~~gaDivv~S~tK~i~G~~d~~gG~vv~ 222 (384)
T PRK06434 194 LDLGADVVIHSATKYISGHSDVVMGVAGT 222 (384)
T ss_pred hhcCCCEEEeecccccCCCCCceEEEEec
Confidence 234679999999999964 3788765
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.1e-16 Score=147.07 Aligned_cols=192 Identities=20% Similarity=0.210 Sum_probs=137.9
Q ss_pred EeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhc
Q 019931 113 LFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLL 192 (334)
Q Consensus 113 ~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~ 192 (334)
||.|.+ .+|++.+++.+...|.- .+|..+...+||+++++++|.|.+++++||++||..++++++++
T Consensus 1 Df~SD~-----~~~~m~~a~~~a~~gd~----~Yg~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~~---- 67 (290)
T PF01212_consen 1 DFRSDT-----PTPAMLEAMAAANVGDD----AYGEDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLRP---- 67 (290)
T ss_dssp EES-SS-----S-HHEEHHHHHTTSB-C----CTTSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHHT----
T ss_pred CCCccC-----CCHHHHHHHHccccCCc----ccCCChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHhc----
Confidence 455655 68999998876665542 47888999999999999999999999999999999999999865
Q ss_pred cCCCccCCCCCeEEEEcCCCchhhH--HHH-HHhhhcCCcEEEEeeC-----CCHHHHHHHHhcC---CCCcEEEEEcCC
Q 019931 193 AGDEKSFKDEKIAIFSDALNHASII--DGI-RIAERTKMVEVFVYKH-----CDMSHLKTLLSCC---TMRKKVVVTDSL 261 (334)
Q Consensus 193 ~~~~~~~~~~gd~Vl~d~~~H~s~~--~g~-~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~---~~~~~lVv~e~v 261 (334)
++.|++....|.... .+. .++ |.+++.++. .|+++|++.+++. ..++++|.++.+
T Consensus 68 ----------~~~vi~~~~aHi~~~E~ga~~~~~----G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t 133 (290)
T PF01212_consen 68 ----------GESVICADTAHIHFDETGAIEELS----GAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENT 133 (290)
T ss_dssp ----------TEEEEEETTEHHHHSSTTHHHHHT----TCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESS
T ss_pred ----------CCceeccccceeeeeccchhhHhc----CcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEec
Confidence 677888877776532 222 234 788887753 3799999999873 246789999988
Q ss_pred CCC-CCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC-CccEEeeC
Q 019931 262 FSM-DGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC-QGGFIACR 334 (334)
Q Consensus 262 ~n~-~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~-~GG~i~~~ 334 (334)
.+. .|.+.+ |++|.++|++||+.|++|.|.-+-..-..+..+.+.. ..+|++..|++|.+|+ .|++++++
T Consensus 134 ~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~---~~~D~v~~~~tK~~g~~~Gavl~~~ 208 (290)
T PF01212_consen 134 TELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIA---AGADSVSFGGTKNGGAPGGAVLAGN 208 (290)
T ss_dssp BTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHH---TTSSEEEEETTSTT-SSSEEEEEES
T ss_pred CcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHh---hhCCEEEEEEEcccccccceEEEec
Confidence 886 477766 6678889999999999999865332211112222222 5689999999999988 56777654
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-15 Score=144.31 Aligned_cols=195 Identities=22% Similarity=0.163 Sum_probs=130.7
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAV 185 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al 185 (334)
+.++++|+.|+ ..+..+|.+++++.+.......+. ..| ..+|++.++++++. +++++++++.+++..++.++
T Consensus 29 ~~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~~Y~-~~~----~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~ 102 (357)
T PRK14809 29 PDDLVKLSSNE-NPHGPSPAAVEAIREAAERVHSYP-KAS----HADLTAALADRWDVSPEQVWLANGGDGALDYLARAM 102 (357)
T ss_pred ccceeEecCCC-CCCCCCHHHHHHHHHHHhhhhcCC-CCC----HHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHh
Confidence 36799999986 245567888887765432212221 122 36788999999874 45677788888998888888
Q ss_pred hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCCcEEEEE
Q 019931 186 GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMRKKVVVT 258 (334)
Q Consensus 186 ~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~~~lVv~ 258 (334)
+++ ||.|++..+.+.......... +.+++.++.. |.+++++.. .++++|++
T Consensus 103 ~~~--------------gd~V~v~~P~y~~~~~~~~~~----g~~~~~~~l~~~~~~~~~~~~~~~~~----~~~k~i~l 160 (357)
T PRK14809 103 LDP--------------GDTVLVPDPGFAYYGMSARYH----HGEVREYPVSKADDFEQTADTVLDAY----DGERIVYL 160 (357)
T ss_pred cCC--------------CCEEEEeCCChHHHHHHHHHc----CCeEEEEecccCcCCCcCHHHHHHhh----cCCcEEEE
Confidence 765 788888777665444434443 6666666531 333443332 25678888
Q ss_pred cCCCCCCCCccCHHHHHHHHHHc--CCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEee
Q 019931 259 DSLFSMDGDFAPMVELVKLRRKY--GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 259 e~v~n~~G~~~pL~~L~ela~k~--ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
++++||+|.+.+.+++.++++.. ++++|+||+|..... .+... ..... .+.-|+++||||.||+.| ||+++
T Consensus 161 ~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~--~~~~~-~~~~~-~~~vi~~~SfSK~~~~~GlRiG~~~~ 236 (357)
T PRK14809 161 TSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAE--RPSAV-ALVEE-RDDVAVLRTFSKAYGLAGLRLGYAVV 236 (357)
T ss_pred eCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccC--CchhH-HHHhh-CCCEEEEecchhHhcCcchhheeeec
Confidence 89999999999988877777654 789999999986432 12111 11111 122488999999999888 99886
Q ss_pred C
Q 019931 334 R 334 (334)
Q Consensus 334 ~ 334 (334)
+
T Consensus 237 ~ 237 (357)
T PRK14809 237 P 237 (357)
T ss_pred C
Confidence 4
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=147.18 Aligned_cols=159 Identities=16% Similarity=0.137 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHH-hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAV-GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK 227 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al-~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~ 227 (334)
.+...+||+++++++|.+++++++||++|+..++.++ .+ +||.|++..+.|.+....+...
T Consensus 28 g~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~--------------~Gd~Viv~~~~~~~~~~~~~~~---- 89 (380)
T TIGR03588 28 GPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVG--------------PGDRVWTTPITFVATANCALYC---- 89 (380)
T ss_pred ChhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCC--------------CCCEEEeCCcchHHHHHHHHHc----
Confidence 3567899999999999999999999999999999887 44 3888999888888877766655
Q ss_pred CcEEEEeeC------CCHHHHHHHHhcCC-CCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCC
Q 019931 228 MVEVFVYKH------CDMSHLKTLLSCCT-MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNG 300 (334)
Q Consensus 228 g~~v~~~~~------~D~~~Le~~l~~~~-~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G 300 (334)
|++++.++. .|++++++++++.+ +++++|+.. ++.|...|+++|.++|++||++||+|++|++|.. -.|
T Consensus 90 G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~---~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~-~~~ 165 (380)
T TIGR03588 90 GAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPV---DFAGKSVDMQAIAALAKKHGLKIIEDASHALGAE-YGG 165 (380)
T ss_pred CCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEEe---CCCCccCCHHHHHHHHHHcCCEEEEECCCcccCc-cCC
Confidence 888888764 38899999987321 257777754 3568899999999999999999999999998743 112
Q ss_pred cccccccCCCCCccEEEecCc--ccccC-CccEEee
Q 019931 301 GGVAEQFNCERDVDICVGTLS--KAAGC-QGGFIAC 333 (334)
Q Consensus 301 ~g~~~~~~~~~~~Div~~Sls--Ka~G~-~GG~i~~ 333 (334)
. ..+.....|+.+.||+ |.++. .||+++.
T Consensus 166 ~----~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~ 197 (380)
T TIGR03588 166 K----PVGNCRYADATVFSFHPVKIITTAEGGAVTT 197 (380)
T ss_pred E----eCCCccccceEEEecCCCCcccccCceEEEE
Confidence 1 1121113489999987 88854 7888765
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-15 Score=145.54 Aligned_cols=158 Identities=16% Similarity=0.215 Sum_probs=120.7
Q ss_pred ccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHH-hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHh
Q 019931 145 ICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAV-GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIA 223 (334)
Q Consensus 145 ~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al-~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls 223 (334)
.+|..+..+++|+.+++++|.+++++++||++|+..++.++ .+ +||.|++..+.|.+....+...
T Consensus 26 ~~~~g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~~~--------------pGd~Viv~~~t~~~~~~~~~~~ 91 (376)
T TIGR02379 26 LSGDGPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLDIQ--------------PGDEVIMPSYTFVSTANAFVLR 91 (376)
T ss_pred ccCCcHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCC--------------CcCEEEECCCCcHHHHHHHHHc
Confidence 34456788999999999999999999999999998888776 33 3889999999998887777666
Q ss_pred hhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCccccccc
Q 019931 224 ERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCG 297 (334)
Q Consensus 224 ~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G 297 (334)
|++++.++.+ |++++++++++ ++++|+. .+++|...|+++|.++|++||++||+|++|+.|..
T Consensus 92 ----G~~~v~vd~d~~~~~~d~~~le~~i~~---~tk~Iip---~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~- 160 (376)
T TIGR02379 92 ----GAKIVFVDIRPDTMNIDETLIESAITH---RTKAIVP---VHYAGVACDMDTIMALANKHQLFVIEDAAQGVMST- 160 (376)
T ss_pred ----CCEEEEEecCCCcCCCCHHHHHHhcCc---CceEEEE---eCCCCCccCHHHHHHHHHHCCCEEEEECccccCCc-
Confidence 8888887642 67888888764 6888874 45679999999999999999999999999998741
Q ss_pred CCCcccccccCCCCCccEEEecCc--ccc--cCCccEEee
Q 019931 298 KNGGGVAEQFNCERDVDICVGTLS--KAA--GCQGGFIAC 333 (334)
Q Consensus 298 ~~G~g~~~~~~~~~~~Div~~Sls--Ka~--G~~GG~i~~ 333 (334)
..|.. .+. -.|+.+.||+ |.+ |..||+|++
T Consensus 161 ~~~~~----~g~--~~~~~~fSf~~~K~l~~g~~gG~v~~ 194 (376)
T TIGR02379 161 YKGRA----LGS--IGHLGTFSFHETKNYTSGGEGGALLI 194 (376)
T ss_pred cCCcc----cCC--CCCEEEEeCCCCCcCcccCCceEEEE
Confidence 11221 111 1255555663 655 347898765
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-15 Score=144.19 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHhHhCCC----cEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhh-HHHHHHh
Q 019931 149 TNYHRLLESCLADLKKKE----DCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASI-IDGIRIA 223 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e----~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~-~~g~~ls 223 (334)
....+++++.+++++|++ .+++++||+.++..++.++..+ ++++|+....+|... ...++..
T Consensus 34 ~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~-------------~~~vlv~~~~~~~~~~~~~a~~~ 100 (363)
T TIGR02326 34 NIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPK-------------DGKLLVVINGAYGARIVQIAEYL 100 (363)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCC-------------CCeEEEEeCChhhHHHHHHHHHc
Confidence 456788999999999975 2556689999999999887654 255666565565553 2222222
Q ss_pred hhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccC
Q 019931 224 ERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGK 298 (334)
Q Consensus 224 ~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~ 298 (334)
|.+++.++. .|++++++++++.+ ++++|.+.++.|++|.+.|+++|.++|++||+++++|++|++|...
T Consensus 101 ----g~~~~~v~~~~~~~~d~~~l~~~l~~~~-~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~- 174 (363)
T TIGR02326 101 ----GIPHHVVDTGEVEPPDVVEVEAILAADP-AITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIP- 174 (363)
T ss_pred ----CCceEEEeCCCCCCCCHHHHHHHHhhCC-CccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcc-
Confidence 666666653 38899999987532 4567888888999999999999999999999999999999865321
Q ss_pred CCcccccccCCC-CCccEEEecCcccc-cCCc-cEEeeC
Q 019931 299 NGGGVAEQFNCE-RDVDICVGTLSKAA-GCQG-GFIACR 334 (334)
Q Consensus 299 ~G~g~~~~~~~~-~~~Div~~SlsKa~-G~~G-G~i~~~ 334 (334)
.++. .++|++++|++|++ |+.| |++.++
T Consensus 175 --------~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~ 205 (363)
T TIGR02326 175 --------IDIAELHIDYLISSANKCIQGVPGFGFVIAR 205 (363)
T ss_pred --------cchhhcCccEEEecCccccccCCcceEEEEC
Confidence 1222 35789999999998 5567 887653
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-15 Score=142.06 Aligned_cols=181 Identities=18% Similarity=0.017 Sum_probs=127.4
Q ss_pred eeEEEeecC-ccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhh
Q 019931 109 KRLLLFSGN-DYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGN 187 (334)
Q Consensus 109 ~~~l~f~sn-~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~ 187 (334)
.++++|++| +.++.+..+...+++..|-. +. .+|+++|+++++.+++++++++.+|+..++. +.
T Consensus 20 ~~~i~l~~ne~p~~~~~~~~~~~~~~~yp~---------~~----~~Lr~~ia~~~~~~~I~it~Gs~~al~~~~~--~~ 84 (330)
T PRK05664 20 ADWLDLSTGIAPWPWPVPAIPADAWARLPE---------TD----DGLEAAARAYYGAPQLLPVAGSQAAIQALPR--LR 84 (330)
T ss_pred HHheeecCCcCCCCCCCcccCHHHHHhCCC---------Ch----HHHHHHHHHHhCCCCEEECcCHHHHHHHHHH--cc
Confidence 357899999 66777644322223333321 11 5789999999999988888888888776642 33
Q ss_pred hhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCC
Q 019931 188 IASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGD 267 (334)
Q Consensus 188 ~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~ 267 (334)
+||.|++..+.+......++.. |++++.++. ++++++++ +++++++.+|+||+|.
T Consensus 85 --------------~gd~v~v~~P~y~~~~~~~~~~----g~~~~~v~~---~~~~~~~~----~~~~v~l~nP~NPTG~ 139 (330)
T PRK05664 85 --------------APGRVGVLSPCYAEHAHAWRRA----GHQVRELDE---AEVEAALD----SLDVLVVVNPNNPTGR 139 (330)
T ss_pred --------------CCCEEEEcCCChHHHHHHHHHc----CCeEEEech---hhHhhhhc----CCCEEEEeCCcCCCCC
Confidence 3788888888888887777766 888888864 35566553 4567777789999999
Q ss_pred ccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 268 FAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 268 ~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
+.+ +++|+++|+++|+++|+||+|.... + ...+. .+...++ -|+++||||+||..| ||++++
T Consensus 140 ~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~--~-~~s~~-~~~~~~~-vi~~~SfSK~~gl~GlRiG~~v~~ 207 (330)
T PRK05664 140 RFDPARLLAWHARLAARGGWLVVDEAFMDNT--P-QHSLA-ACAHRPG-LIVLRSFGKFFGLAGARLGFVLAE 207 (330)
T ss_pred ccCHHHHHHHHHHHHhcCCEEEEECCcccCC--C-ccccc-ccccCCC-EEEEeeccccccCCCcceEEEEeC
Confidence 988 4556667789999999999996431 1 11111 1111122 388999999999888 999874
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-15 Score=148.16 Aligned_cols=191 Identities=13% Similarity=0.121 Sum_probs=128.1
Q ss_pred CHHHHHHHHHh----cCCCCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHHHHHHHHHHh-hhhhhccCC
Q 019931 125 HPTIAKAAARH----GMGPRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAANMAVIVAVG-NIASLLAGD 195 (334)
Q Consensus 125 ~p~v~~a~~~~----g~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~An~~ai~al~-~~~~~~~~~ 195 (334)
+..+++++.++ +.+...+....|...+.+.+.+.+.+..| .+++++++++++|+..++.+++ .+
T Consensus 90 P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~------- 162 (481)
T PTZ00377 90 PADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDP------- 162 (481)
T ss_pred CHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCC-------
Confidence 34566655432 21223344445554444444444444333 3567888888999999999887 44
Q ss_pred CccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCC---CCcEEEEEcCCCCCC
Q 019931 196 EKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCT---MRKKVVVTDSLFSMD 265 (334)
Q Consensus 196 ~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~---~~~~lVv~e~v~n~~ 265 (334)
||.|++..+.+..+...+++. |++++.++. .|+++|++.+++.. .++++|++.+++||+
T Consensus 163 -------gD~Vlv~~P~y~~y~~~~~~~----g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPT 231 (481)
T PTZ00377 163 -------SDGVMIPIPQYPLYSAAITLL----GGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPT 231 (481)
T ss_pred -------CCEEEECCCCchhHHHHHHHc----CCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCC
Confidence 888999999988888777776 777777753 26799999886421 257877777999999
Q ss_pred CCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCc--ccccc-cCCCCC-----ccEEEecCcccc-cCCc---cE
Q 019931 266 GDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGG--GVAEQ-FNCERD-----VDICVGTLSKAA-GCQG---GF 330 (334)
Q Consensus 266 G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~--g~~~~-~~~~~~-----~Div~~SlsKa~-G~~G---G~ 330 (334)
|.+.+ +++|+++|++|++++|+||+|...++..... .+... .++.++ .-|+++||||++ |+.| ||
T Consensus 232 G~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~ 311 (481)
T PTZ00377 232 GQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGY 311 (481)
T ss_pred CcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEE
Confidence 99988 7889999999999999999998766621111 11110 011111 137889999984 6544 88
Q ss_pred Eee
Q 019931 331 IAC 333 (334)
Q Consensus 331 i~~ 333 (334)
+++
T Consensus 312 ~~~ 314 (481)
T PTZ00377 312 FEL 314 (481)
T ss_pred EEE
Confidence 874
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-15 Score=141.16 Aligned_cols=169 Identities=20% Similarity=0.144 Sum_probs=119.7
Q ss_pred hHHHHHHHHHHHhHhCCC----cEEEeccHHHHHHHHHHHHhhhhhhccCCCc--cCCCCCeEEEEcCCCchhhHHHHHH
Q 019931 149 TNYHRLLESCLADLKKKE----DCLLCPTGFAANMAVIVAVGNIASLLAGDEK--SFKDEKIAIFSDALNHASIIDGIRI 222 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e----~alv~~sG~~An~~ai~al~~~~~~~~~~~~--~~~~~gd~Vl~d~~~H~s~~~g~~l 222 (334)
..+.+++.+.+++++|.+ .++++++|++||..++.++..+. .+.... ...+++++|+++...|.++...+..
T Consensus 37 ~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~ 114 (345)
T cd06450 37 TEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRA--RKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAY 114 (345)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHh--hhhhhcccccccCCeEEEEcCcchhHHHHHHHH
Confidence 344444555566677864 57888999999999998876420 000000 0011256889999999998888776
Q ss_pred hhhcCCcEEEEeeC-----CCHHHHHHHHhcC---CCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccc
Q 019931 223 AERTKMVEVFVYKH-----CDMSHLKTLLSCC---TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTF 294 (334)
Q Consensus 223 s~~~~g~~v~~~~~-----~D~~~Le~~l~~~---~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~G 294 (334)
. +.+++.++. .|+++|++++++. ..++++|++..++|++|.+.|+++|.++|+++|++|++|+||+.+
T Consensus 115 ~----g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~ 190 (345)
T cd06450 115 L----DVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGF 190 (345)
T ss_pred H----hcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHH
Confidence 6 677777652 4899999998752 125678888888999999999999999999999999999999987
Q ss_pred cccC-CCcccccccCCCCCccEEEecCcccccC
Q 019931 295 VCGK-NGGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 295 v~G~-~G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++.- ...+. ..-.+++|+++.|++|.+++
T Consensus 191 ~~~~~~~~~~---~~~~~~~d~~~~s~~K~l~~ 220 (345)
T cd06450 191 LLPFPEPRHL---DFGIERVDSISVDPHKYGLV 220 (345)
T ss_pred HhhChhhHHH---hcCccccCEEEEchhHhhCC
Confidence 6521 11111 11124688999999998854
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.1e-15 Score=141.71 Aligned_cols=179 Identities=17% Similarity=0.136 Sum_probs=127.1
Q ss_pred CCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC----cEEEeccHHHHHHHHHHHHhhhhhhccCCCccC
Q 019931 124 SHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE----DCLLCPTGFAANMAVIVAVGNIASLLAGDEKSF 199 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e----~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~ 199 (334)
.+|.+++++.+.-. . + ...+....+++++.+++++|.+ .++++++|++++..++.++..+
T Consensus 10 ~~~~~~~~~~~~~~-~---~-~~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~----------- 73 (355)
T TIGR03301 10 TSATVRDAMLVDWC-H---W-DSEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPR----------- 73 (355)
T ss_pred CCHHHHHHhhhhcc-C---C-CHHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCC-----------
Confidence 36778887765211 1 1 1112467799999999999975 2446789999999999887654
Q ss_pred CCCCeEEEEcCCCchh-hHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHH
Q 019931 200 KDEKIAIFSDALNHAS-IIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVE 273 (334)
Q Consensus 200 ~~~gd~Vl~d~~~H~s-~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~ 273 (334)
++++|+.+..++.. +...++.. |.+++.++. .|++++++.+++. ++.++|+..++.+++|.+.|+++
T Consensus 74 --~~~vi~~~~~~~~~~~~~~a~~~----g~~~~~i~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~~G~~~~~~~ 146 (355)
T TIGR03301 74 --DGKLLVLINGAYGERLAKICEYL----GIPHTDLNFSEYEPPDLNRIEEALAAD-PDITHVATVHHETTTGILNPLEA 146 (355)
T ss_pred --CCeEEEECCCchhhHHHHHHHHc----CCceEEEecCCCCCCCHHHHHHHHHhC-CCceEEEEEecCCcccchhHHHH
Confidence 24556666666554 22223322 667776653 3789999998753 25667777788889999999999
Q ss_pred HHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccc-cCCc-cEEeeC
Q 019931 274 LVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAA-GCQG-GFIACR 334 (334)
Q Consensus 274 L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~-G~~G-G~i~~~ 334 (334)
|.++|++||+++|+|++|++|... +.+. .++|++++|++|++ |+.| |+++++
T Consensus 147 i~~l~~~~~~~livD~~~s~g~~~---------~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~ 201 (355)
T TIGR03301 147 IAKVARSHGAVLIVDAMSSFGAIP---------IDIEELDVDALIASANKCLEGVPGFGFVIAR 201 (355)
T ss_pred HHHHHHHcCCEEEEEeccccCCcc---------cchhhcCccEEEecCCcccccCCceeEEEEC
Confidence 999999999999999999876321 1111 35789999999998 5556 777653
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-15 Score=144.70 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=121.2
Q ss_pred ccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhh
Q 019931 145 ICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224 (334)
Q Consensus 145 ~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~ 224 (334)
.+|..+..+++|+.+++++|.+++++++||++|+..++.++.- ++||.|+++.+.|.++...+...
T Consensus 26 ~~g~~~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~-------------~~Gd~Viv~~~t~~~~~~~~~~~- 91 (375)
T PRK11706 26 LCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDI-------------QPGDEVIMPSYTFVSTANAFVLR- 91 (375)
T ss_pred ccCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCC-------------CCCCEEEECCCCcHHHHHHHHHc-
Confidence 4455688899999999999999999999999998887766531 14899999999999998888777
Q ss_pred hcCCcEEEEeeC------CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccC
Q 019931 225 RTKMVEVFVYKH------CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGK 298 (334)
Q Consensus 225 ~~~g~~v~~~~~------~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~ 298 (334)
|++++.++. .|++++++++++ ++++|++. +++|...++++|.++|+++|++||+|++|+.|..-
T Consensus 92 ---G~~~v~~d~d~~~~~~d~~~le~~i~~---~tk~i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~- 161 (375)
T PRK11706 92 ---GAKIVFVDIRPDTMNIDETLIEAAITP---KTRAIVPV---HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTY- 161 (375)
T ss_pred ---CCEEEEEecCCCcCCcCHHHHHHhcCC---CCeEEEEe---CCCCCccCHHHHHHHHHHcCCEEEEECcccccccc-
Confidence 888888863 378899988864 67877754 45798999999999999999999999999987521
Q ss_pred CCcccccccCCCCCccEEEecCc--ccccC-CccEEe
Q 019931 299 NGGGVAEQFNCERDVDICVGTLS--KAAGC-QGGFIA 332 (334)
Q Consensus 299 ~G~g~~~~~~~~~~~Div~~Sls--Ka~G~-~GG~i~ 332 (334)
.|... +- -.|+.+.||+ |.+++ .||+++
T Consensus 162 ~~~~~----g~--~~~~~~~Sf~~~K~l~~g~gG~~~ 192 (375)
T PRK11706 162 KGRAL----GT--IGHIGCFSFHETKNYTAGEGGALL 192 (375)
T ss_pred CCeee----ec--CcCEEEEeCCCCccccccCCeEEE
Confidence 12211 11 1256666665 99964 455544
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-15 Score=147.14 Aligned_cols=201 Identities=13% Similarity=0.086 Sum_probs=131.0
Q ss_pred eeEEEeecCccCCCCCCHHHHH----HHHHhcC-C-CCccccccCchHHHHHHHHHHHhHhC--------CCcEE--Eec
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAK----AAARHGM-G-PRGSALICGYTNYHRLLESCLADLKK--------KEDCL--LCP 172 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~----a~~~~g~-g-~~~sr~~~G~~~~~~~LE~~La~~~g--------~e~al--v~~ 172 (334)
+..+||+...+-.+..++.+.+ ++++... + ...+....|.. +|++.+++++. .++++ .++
T Consensus 29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~----~lR~aia~~~~~~~~~~~~~~~v~~~~t~ 104 (404)
T PTZ00376 29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQ----SFIEAAQKLLFGEASYALAEKRIATVQAL 104 (404)
T ss_pred cccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCH----HHHHHHHHHhcCCCccccccCeEEEeecc
Confidence 4668988886544444433333 4332221 1 13344445554 45555555431 23444 366
Q ss_pred cHHHHHHHHHH---HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC---C----CHHHH
Q 019931 173 TGFAANMAVIV---AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH---C----DMSHL 242 (334)
Q Consensus 173 sG~~An~~ai~---al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~---~----D~~~L 242 (334)
+|..|...++. ++++ +||.|++..+.+..+...++.. |++++.++. + |++.+
T Consensus 105 G~~~al~~~~~~l~~~~~--------------~Gd~Vlv~~P~y~~~~~~~~~~----G~~~~~v~l~~~~~~~~d~~~l 166 (404)
T PTZ00376 105 SGTGALRLGFEFLKRFLP--------------AGTTVYVSNPTWPNHVNIFKSA----GLNVKEYRYYDPKTKGLDFDGM 166 (404)
T ss_pred CcchHHHHHHHHHHHhcC--------------CCCEEEEcCCCchhHHHHHHHc----CCceeeccccCcccCCcCHHHH
Confidence 77777777665 3343 3889999999988888887777 888888875 2 78899
Q ss_pred HHHHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCC-cc-cccccCCCCCccEEE
Q 019931 243 KTLLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNG-GG-VAEQFNCERDVDICV 317 (334)
Q Consensus 243 e~~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G-~g-~~~~~~~~~~~Div~ 317 (334)
++++++..++++++++.+++||+|.+.+ +++|+++|++|++++|+||+|....++... .. ....+....+.-|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i 246 (404)
T PTZ00376 167 LEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVA 246 (404)
T ss_pred HHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 9988754335688889999999999877 667888999999999999999865442100 00 011111112224899
Q ss_pred ecCcccccCCc---cEE
Q 019931 318 GTLSKAAGCQG---GFI 331 (334)
Q Consensus 318 ~SlsKa~G~~G---G~i 331 (334)
+||||+||+.| ||+
T Consensus 247 ~SfSK~~~~~GlRvG~~ 263 (404)
T PTZ00376 247 QSFSKNMGLYGERIGAL 263 (404)
T ss_pred EeCCCcccccccccceE
Confidence 99999999876 886
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-15 Score=145.71 Aligned_cols=199 Identities=14% Similarity=0.156 Sum_probs=125.8
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC------CCCccccccCchHHHHHHHHHHHhHh----C----CCcEEEeccH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM------GPRGSALICGYTNYHRLLESCLADLK----K----KEDCLLCPTG 174 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~------g~~~sr~~~G~~~~~~~LE~~La~~~----g----~e~alv~~sG 174 (334)
..+++|+.++ ..+..+|.+.+++.+.-. ...++....|. .+|++++++++ | .+++++++++
T Consensus 34 ~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~----~~LR~aia~~~~~~~g~~~~~~~I~it~Ga 108 (409)
T PRK07590 34 AKIIRLGIGD-VTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGY----DFLREKIAENDYQARGCDISADEIFISDGA 108 (409)
T ss_pred CceEEecCcC-CCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCC----HHHHHHHHHHHHHhcCCcCChhhEEECCCH
Confidence 6789999987 456678888886655321 11222233444 44555566543 3 2456777777
Q ss_pred HHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcE-----------EEEeeCCCHHHHH
Q 019931 175 FAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVE-----------VFVYKHCDMSHLK 243 (334)
Q Consensus 175 ~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~-----------v~~~~~~D~~~Le 243 (334)
.+++..++ .++.+ ||.|++..+.+......++.. |.+ ++.++.+.-+.++
T Consensus 109 ~~al~~l~-~~~~~--------------gd~V~v~~P~Y~~~~~~~~~~----g~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (409)
T PRK07590 109 KCDTGNIL-DIFGP--------------DNTIAVTDPVYPVYVDTNVMA----GRTGEANEDGRYSGIVYLPCTAENNFV 169 (409)
T ss_pred HHHHHHHH-HhcCC--------------CCEEEEeCCCCcchHHHHHHc----CCcccccccccccceeEeecccccCCc
Confidence 77776643 44443 788888888887777776666 554 6666642111111
Q ss_pred HHHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCC-cccccccCCCCCccEEEec
Q 019931 244 TLLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNG-GGVAEQFNCERDVDICVGT 319 (334)
Q Consensus 244 ~~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G-~g~~~~~~~~~~~Div~~S 319 (334)
..+.+ +++++|++.+++||+|.+.+ +++|+++|++|+++||+||+|...++...- ..+.. +.-..+..|+++|
T Consensus 170 ~d~~~--~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~-~~~~~~~vi~~~S 246 (409)
T PRK07590 170 PELPE--EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYE-IEGARECAIEFRS 246 (409)
T ss_pred ccCcc--cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhh-CCCcccceEEEec
Confidence 11111 36788888899999999988 567888899999999999999864432210 11111 1111223478999
Q ss_pred CcccccCCc---cEEeeC
Q 019931 320 LSKAAGCQG---GFIACR 334 (334)
Q Consensus 320 lsKa~G~~G---G~i~~~ 334 (334)
|||+||..| ||++++
T Consensus 247 fSK~~~~pGlRiG~~i~~ 264 (409)
T PRK07590 247 FSKTAGFTGTRCAYTVVP 264 (409)
T ss_pred CccccCCcCceeEEEEcC
Confidence 999999877 898764
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=147.98 Aligned_cols=158 Identities=19% Similarity=0.199 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHhHhCCCcEEEeccH-HHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 150 NYHRLLESCLADLKKKEDCLLCPTG-FAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~e~alv~~sG-~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
....+.|+.+|+++|++++++..+| +.+|.+++.+++++ ||.|++++.+|.|++.++.++ +
T Consensus 66 G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~~--------------gd~VLv~RN~HkSv~~alil~----g 127 (417)
T PF01276_consen 66 GIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCRP--------------GDKVLVDRNCHKSVYNALILS----G 127 (417)
T ss_dssp THHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTTT--------------TCEEEEETT--HHHHHHHHHH----T
T ss_pred cHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcCC--------------CCEEEEcCCcHHHHHHHHHHc----C
Confidence 4558999999999999999877655 67999999999875 899999999999999999999 8
Q ss_pred cEEEEeeCC----------CH-----HHHHHHHhcCCCCcE---EEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecC
Q 019931 229 VEVFVYKHC----------DM-----SHLKTLLSCCTMRKK---VVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDA 290 (334)
Q Consensus 229 ~~v~~~~~~----------D~-----~~Le~~l~~~~~~~~---lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeA 290 (334)
+.+++++.. ++ +.++++|++.+..+. +|++.+.| +|.+.|+++|.++|++++..|+||||
T Consensus 128 a~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY--~Gv~~di~~I~~~~h~~~~~llvDEA 205 (417)
T PF01276_consen 128 AIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY--YGVCYDIKEIAEICHKHGIPLLVDEA 205 (417)
T ss_dssp EEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T--TSEEE-HHHHHHHHCCTECEEEEE-T
T ss_pred CeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC--CeEEECHHHHHHHhcccCCEEEEEcc
Confidence 887765431 44 889999988654334 56666655 89999999999999999999999999
Q ss_pred cccccccCCCcccccccCCCCCcc-------EEEecCcccccC--CccEE
Q 019931 291 HGTFVCGKNGGGVAEQFNCERDVD-------ICVGTLSKAAGC--QGGFI 331 (334)
Q Consensus 291 h~~Gv~G~~G~g~~~~~~~~~~~D-------iv~~SlsKa~G~--~GG~i 331 (334)
|+.- ++-. .+.. ..+.-++| +++.|++|++++ +++++
T Consensus 206 hGah-~~F~--~lp~-~a~~~gad~~~~~~~~vvqS~HKtL~altQts~l 251 (417)
T PF01276_consen 206 HGAH-FGFH--PLPR-SALALGADRPNDPGIIVVQSTHKTLPALTQTSML 251 (417)
T ss_dssp T-TT-GGCS--GGGT-TCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEE
T ss_pred cccc-ccCC--CCcc-chhhccCccccccceeeeechhhcccccccceEE
Confidence 9853 3322 1111 11224567 999999999987 45554
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.7e-15 Score=145.07 Aligned_cols=204 Identities=19% Similarity=0.164 Sum_probs=135.6
Q ss_pred ceeEEEeecCc-cCCCCCCH---HHHHHHH-HhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHH
Q 019931 108 FKRLLLFSGND-YLGLSSHP---TIAKAAA-RHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVI 182 (334)
Q Consensus 108 g~~~l~f~sn~-yLgl~~~p---~v~~a~~-~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai 182 (334)
|...+++.+.+ |++|-++. .+.++.. ....|...+ +.++-..+||+++++++|.++++++++|++|+..++
T Consensus 10 g~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~gd~~Y----~~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~ 85 (431)
T cd00617 10 GYNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMMLGDEAY----AGSKSFYDLEDAVQDLFGFKHIIPTHQGRGAENILF 85 (431)
T ss_pred CCCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHhCCCcc----CCCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHH
Confidence 46677777775 56777653 3332211 112333222 223334789999999999999999999999999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC---------------CCHHHHHHHHh
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH---------------CDMSHLKTLLS 247 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~---------------~D~~~Le~~l~ 247 (334)
.+++++ ||+|+. .+...+....+.+. |++++.++. .|+++|+++++
T Consensus 86 ~al~~p--------------GD~V~~-~~~f~~~~~~i~~~----Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~ 146 (431)
T cd00617 86 SILLKP--------------GRTVPS-NMHFDTTRGHIEAN----GAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLID 146 (431)
T ss_pred HHhCCC--------------CCEEcc-CCcccchHHHHHhC----CCEeEEEecccccccccccCCCCCcCHHHHHHHhC
Confidence 988765 787753 33333444555555 666665432 37899999997
Q ss_pred cC-CCCcEEEEEcCCCCCC-CCccC---HHHHHHHHHHcCCEEEEecCcccc-cc-------cCCCcccccc-cCCCCCc
Q 019931 248 CC-TMRKKVVVTDSLFSMD-GDFAP---MVELVKLRRKYGFLLVLDDAHGTF-VC-------GKNGGGVAEQ-FNCERDV 313 (334)
Q Consensus 248 ~~-~~~~~lVv~e~v~n~~-G~~~p---L~~L~ela~k~ga~LivDeAh~~G-v~-------G~~G~g~~~~-~~~~~~~ 313 (334)
+. ..++++|+++.++|+. |.+.+ +++|.++|++||++||.|+||..+ .+ |..+..+.+. ..+....
T Consensus 147 ~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~s 226 (431)
T cd00617 147 EVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYA 226 (431)
T ss_pred cccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccC
Confidence 53 2347889999999986 88876 567899999999999999998753 11 1112222110 0011234
Q ss_pred cEEEecCcccccC-CccEEeeC
Q 019931 314 DICVGTLSKAAGC-QGGFIACR 334 (334)
Q Consensus 314 Div~~SlsKa~G~-~GG~i~~~ 334 (334)
|....|+.|.++. .||+|+++
T Consensus 227 d~~~mS~~K~~~~~~GG~i~~~ 248 (431)
T cd00617 227 DGCTMSAKKDGLVNIGGFLALR 248 (431)
T ss_pred CEEEEEeecCCCCccceEEEeC
Confidence 6778888887754 69999874
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.7e-15 Score=144.75 Aligned_cols=174 Identities=13% Similarity=0.106 Sum_probs=121.8
Q ss_pred ccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHHHHHHHHHHh-hhhhhccCCCccCCCCCeEEEEcCCCchh
Q 019931 141 GSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAANMAVIVAVG-NIASLLAGDEKSFKDEKIAIFSDALNHAS 215 (334)
Q Consensus 141 ~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~An~~ai~al~-~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s 215 (334)
.+....|...+.+.+.+.+.+..| .+++++++++.+++..++.+++ .+ ||.|++..+.+..
T Consensus 102 ~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~p--------------Gd~Vli~~P~Y~~ 167 (407)
T PLN02368 102 AYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGE--------------KDGVLVPVPQYPL 167 (407)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCC--------------CCEEEEeCCCCcc
Confidence 344444554555555555544435 2467777888889999998876 44 7888888888888
Q ss_pred hHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCC---CCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcC
Q 019931 216 IIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCT---MRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYG 282 (334)
Q Consensus 216 ~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~---~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~g 282 (334)
+...+.+. |.+++.++. .|++.|++.+++.+ .++++|++.+++||+|.+.+ +++|+++|++||
T Consensus 168 y~~~~~~~----g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~ 243 (407)
T PLN02368 168 YSATISLL----GGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQER 243 (407)
T ss_pred HHHHHHHc----CCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcC
Confidence 88777776 778877753 37899999886421 25788888899999999988 667888999999
Q ss_pred CEEEEecCcccccccCCCc--cccccc-CC----C-CCccEEEecCcccc-cCCc---cEEe
Q 019931 283 FLLVLDDAHGTFVCGKNGG--GVAEQF-NC----E-RDVDICVGTLSKAA-GCQG---GFIA 332 (334)
Q Consensus 283 a~LivDeAh~~Gv~G~~G~--g~~~~~-~~----~-~~~Div~~SlsKa~-G~~G---G~i~ 332 (334)
+++|+||+|...+++.... .+.... .+ . ...-|++.||||+| |+.| ||++
T Consensus 244 ~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i 305 (407)
T PLN02368 244 LVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFE 305 (407)
T ss_pred CEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEE
Confidence 9999999999876643111 111110 11 1 11248899999998 6766 8886
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=140.89 Aligned_cols=186 Identities=17% Similarity=0.148 Sum_probs=125.7
Q ss_pred CCHHHHHHHHHhcC---CCCccccccCchHHHHHHHHHHHh---HhCC---CcEEEeccHHHHHHHHHHHHhhhhhhccC
Q 019931 124 SHPTIAKAAARHGM---GPRGSALICGYTNYHRLLESCLAD---LKKK---EDCLLCPTGFAANMAVIVAVGNIASLLAG 194 (334)
Q Consensus 124 ~~p~v~~a~~~~g~---g~~~sr~~~G~~~~~~~LE~~La~---~~g~---e~alv~~sG~~An~~ai~al~~~~~~~~~ 194 (334)
.++.|++++.+|-. +...+...++. .....+++.+++ +++. +.+++++++++++..++.++.... +..
T Consensus 11 ~~~~v~~~~~~~~~~~~~n~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~~~~-~~~- 87 (382)
T TIGR03403 11 LDPKVKELMDPFFCDIYGNPNSLHQFGT-ATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDE-ILK- 87 (382)
T ss_pred CCHHHHHHHHHHHHhcCcCCccccHHHH-HHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHHHhh-ccc-
Confidence 46788887765432 22222222221 223344444444 4443 456677888889998888763200 000
Q ss_pred CCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCcc
Q 019931 195 DEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFA 269 (334)
Q Consensus 195 ~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~ 269 (334)
.+++.|++....|.+....+.... ..|.+++.++.+ |+++|++++++ ++++|++.+++|++|.+.
T Consensus 88 ------~~~~~vi~~~~e~ps~~~~~~~~~-~~G~~v~~v~~~~~g~~d~~~l~~~i~~---~t~lv~~~~~~n~tG~~~ 157 (382)
T TIGR03403 88 ------GGKNHIITTEVEHPAVRATCAFLE-SLGVEVTYLPINEQGTITAEQVREAITE---KTALVSVMWANNETGMIF 157 (382)
T ss_pred ------CCCCEEEEcCCccHHHHHHHHHHH-HCCCEEEEEecCCCCCCCHHHHHHhccc---CCeEEEEEcccCCCcccc
Confidence 125678888888988776655432 237888877653 78888888864 689999999999999999
Q ss_pred CHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccccCCc-cEE
Q 019931 270 PMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAAGCQG-GFI 331 (334)
Q Consensus 270 pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~G~~G-G~i 331 (334)
|+++|.++|+++|+++++|++|+.|.+- ..+ ..++|+++.|++|.+|+.| |++
T Consensus 158 ~~~~I~~la~~~g~~~ivD~a~~~g~~~---------~~~~~~~~D~~~~s~~K~~gp~G~g~l 212 (382)
T TIGR03403 158 PIKEIGEICKERGVLFHTDAVQAIGKIP---------VDVQKAGVDFLSFSAHKFHGPKGVGGL 212 (382)
T ss_pred CHHHHHHHHHHcCCEEEEechhhcCCCc---------cCccccCCCEEEEcchhhCCCCceEEE
Confidence 9999999999999999999999865321 122 2457999999999888765 544
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.1e-15 Score=143.70 Aligned_cols=206 Identities=17% Similarity=0.118 Sum_probs=135.6
Q ss_pred eEEEeecCcc--CCCCC--CHHHHHHHHHhcC-C-CCccccccCchHHHHHHHHHHHhHhC----CCcE--EEeccHHHH
Q 019931 110 RLLLFSGNDY--LGLSS--HPTIAKAAARHGM-G-PRGSALICGYTNYHRLLESCLADLKK----KEDC--LLCPTGFAA 177 (334)
Q Consensus 110 ~~l~f~sn~y--Lgl~~--~p~v~~a~~~~g~-g-~~~sr~~~G~~~~~~~LE~~La~~~g----~e~a--lv~~sG~~A 177 (334)
..+||+.+.+ -+... .+.+++++.+... + ...+....|..++.+.+.+.+.+..+ .++. ++++++.+|
T Consensus 27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~a 106 (396)
T PRK09257 27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGA 106 (396)
T ss_pred CcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHH
Confidence 4688888743 12222 3677777766532 2 12344455654444444444433222 2344 667777889
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCC
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCT 250 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~ 250 (334)
+..++.++... ++||.|++..+.+......++.. |++++.++. .|++.|++.+++..
T Consensus 107 l~~~~~~l~~~------------~pGd~Vlv~~P~y~~~~~~~~~~----g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~ 170 (396)
T PRK09257 107 LRVGADFLKRA------------FPDAKVWVSDPTWPNHRAIFEAA----GLEVKTYPYYDAATKGLDFDAMLADLSQAP 170 (396)
T ss_pred HHHHHHHHHHh------------CCCCeEEECCCCcccHHHHHHHc----CCcEEEEeccccccCccCHHHHHHHHHhCC
Confidence 88888766421 13889999999888888777776 888887763 27889998887543
Q ss_pred CCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCC--CcccccccCCCCCccEEEecCccccc
Q 019931 251 MRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKN--GGGVAEQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~--G~g~~~~~~~~~~~Div~~SlsKa~G 325 (334)
.+++++++.+++||+|.+.+ +++|+++|++|++++|.||+|....++.. -..+....+..++ -|+++||||+|+
T Consensus 171 ~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~-vi~i~SfSK~~~ 249 (396)
T PRK09257 171 AGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLE-LLVASSFSKNFG 249 (396)
T ss_pred CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCc-EEEEEEcCCcCc
Confidence 35678888999999999887 67789999999999999999986433200 0011111111123 488999999999
Q ss_pred CCc---cEEe
Q 019931 326 CQG---GFIA 332 (334)
Q Consensus 326 ~~G---G~i~ 332 (334)
+.| ||++
T Consensus 250 ~~GlRiG~~~ 259 (396)
T PRK09257 250 LYGERVGALS 259 (396)
T ss_pred cccccceeEE
Confidence 866 8875
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.7e-15 Score=143.79 Aligned_cols=155 Identities=15% Similarity=0.200 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHH-hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAV-GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK 227 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al-~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~ 227 (334)
.+...+||+++++++|.+++++++||++|+..++.++ ..+ ||.|++..+.|.+....+...
T Consensus 32 g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~~~~--------------Gd~Viv~~~~~~~~~~~~~~~---- 93 (379)
T PRK11658 32 GPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALGIGP--------------GDEVITPSLTWVSTLNMIVLL---- 93 (379)
T ss_pred CHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCC--------------CCEEEECCCcHHHHHHHHHHc----
Confidence 4667999999999999999999999999999999887 443 788999888988887776665
Q ss_pred CcEEEEeeC------CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCc
Q 019931 228 MVEVFVYKH------CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGG 301 (334)
Q Consensus 228 g~~v~~~~~------~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~ 301 (334)
|++++.++. .|++++++++.+ ++++|+.. ++.|.+.|+++|.++|+++|+++|+|++|++|..- .|.
T Consensus 94 G~~~v~vd~~~~~~~~d~~~l~~~i~~---~tkav~~~---~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~-~~~ 166 (379)
T PRK11658 94 GATPVMVDVDRDTLMVTPEAIEAAITP---RTKAIIPV---HYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYY-KGR 166 (379)
T ss_pred CCEEEEEecCCCcCCcCHHHHHHhccc---CCeEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeE-CCe
Confidence 888888763 278899988864 67888733 45788999999999999999999999999987532 121
Q ss_pred ccccccCCCCCccEEEecCccccc-CCccEEee
Q 019931 302 GVAEQFNCERDVDICVGTLSKAAG-CQGGFIAC 333 (334)
Q Consensus 302 g~~~~~~~~~~~Div~~SlsKa~G-~~GG~i~~ 333 (334)
.+ +- .++++...+-+|.+. +.||++++
T Consensus 167 ~~----g~-~g~~~~Sf~~~K~l~~g~GG~v~~ 194 (379)
T PRK11658 167 HI----GA-RGTAIFSFHAIKNITCAEGGLVVT 194 (379)
T ss_pred ec----CC-CCCEEEeCCCCCcCcccCceEEEE
Confidence 11 11 122444333457663 46888875
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.4e-15 Score=155.96 Aligned_cols=214 Identities=12% Similarity=0.003 Sum_probs=140.0
Q ss_pred hcccce----eEEEeecC-ccCCCC--CCHHHHHHHHH-hcCCCCccccccCchHHHHHHHHHHHhHhC---CCcEEEec
Q 019931 104 FARQFK----RLLLFSGN-DYLGLS--SHPTIAKAAAR-HGMGPRGSALICGYTNYHRLLESCLADLKK---KEDCLLCP 172 (334)
Q Consensus 104 ~~~~g~----~~l~f~sn-~yLgl~--~~p~v~~a~~~-~g~g~~~sr~~~G~~~~~~~LE~~La~~~g---~e~alv~~ 172 (334)
.+.+|+ +|+|+++. .+.++. .||+|.+|+.+ .+....... ..-.++...+|.++|++..+ .+++++++
T Consensus 356 ~d~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~hv~~-~~~~hepa~~LAe~L~~~~~~~~l~rVffs~ 434 (817)
T PLN02974 356 PKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAVAYAAGRYGHVMF-PENVHEPALRAAELLLGGPGKGWASRVFFSD 434 (817)
T ss_pred ECCCCCcccceEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCCcccc-CccCCHHHHHHHHHHHhccCCCCCCEEEECC
Confidence 345666 99998774 345554 59999997754 332221111 11135677889999999765 35788889
Q ss_pred cHHHHHHHHHHHHhhhhhhccCCCccC---------CCCCeEEEEcCCCchhhHHHHHHhhhc-C--C--cE-----EEE
Q 019931 173 TGFAANMAVIVAVGNIASLLAGDEKSF---------KDEKIAIFSDALNHASIIDGIRIAERT-K--M--VE-----VFV 233 (334)
Q Consensus 173 sG~~An~~ai~al~~~~~~~~~~~~~~---------~~~gd~Vl~d~~~H~s~~~g~~ls~~~-~--g--~~-----v~~ 233 (334)
||++|+..+|+...+.-... .+.... .++..+|-....+|+.+..++.++... . . .. ...
T Consensus 435 sGSeAvE~AlKmA~r~y~~~-~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~ 513 (817)
T PLN02974 435 NGSTAIEVALKMAFRKFIVD-HGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLF 513 (817)
T ss_pred chHHHHHHHHHHHHHHHHHh-cCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcc
Confidence 99999999999654320000 010000 023457778899999888777665210 0 0 00 000
Q ss_pred e----------------eCC--C-----------------------------HHHHHHHHhc-----CCCCcEEEEEcCC
Q 019931 234 Y----------------KHC--D-----------------------------MSHLKTLLSC-----CTMRKKVVVTDSL 261 (334)
Q Consensus 234 ~----------------~~~--D-----------------------------~~~Le~~l~~-----~~~~~~lVv~e~v 261 (334)
+ +.. + .+.+++.|++ ...+...|++|++
T Consensus 514 ~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPv 593 (817)
T PLN02974 514 LDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPV 593 (817)
T ss_pred cCCCccccccccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEecc
Confidence 0 000 0 1456777753 1236789999996
Q ss_pred -CCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEecCccccc
Q 019931 262 -FSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 262 -~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~SlsKa~G 325 (334)
.+..|.+.| +++|+++|++||++||+||+++. +|++|..+ ++++++.|| |+ +++|+++
T Consensus 594 iqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TG--fGRtG~~fa~e~~gv~PD--Ii--~~gKgLt 657 (817)
T PLN02974 594 LHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTG--LWRLGVESAWELLGCKPD--IA--CYAKLLT 657 (817)
T ss_pred ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccC--CCcccchhhHHhcCCCCC--EE--eeccccc
Confidence 677787655 89999999999999999999994 89999887 478898884 55 8999996
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-14 Score=135.94 Aligned_cols=195 Identities=15% Similarity=0.161 Sum_probs=140.5
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCC---CcEEEe-ccHHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKK---EDCLLC-PTGFAANMAVIV 183 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~---e~alv~-~sG~~An~~ai~ 183 (334)
.++|-+.--| +.+..+|.|++|++++- .|--|+. .+...+.+.+.....+.++. +..++| ++-.-++..+|+
T Consensus 25 ~DvlPmWVAD-MDf~~pp~i~~Al~~rvdhGvfGY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~ 101 (388)
T COG1168 25 EDVLPMWVAD-MDFPTPPEIIEALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIR 101 (388)
T ss_pred CCcceeeeec-ccCCCCHHHHHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHH
Confidence 4566666666 78999999999998764 3434444 23344555555555555442 334555 666778888999
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC--------CCHHHHHHHHhcCCCCcEE
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH--------CDMSHLKTLLSCCTMRKKV 255 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~--------~D~~~Le~~l~~~~~~~~l 255 (334)
++.++ ||-|+...+.+......+... +.+++..+. .|+++||+.+.+ .+.++
T Consensus 102 ~~T~~--------------gd~Vvi~tPvY~PF~~~i~~n----~R~~i~~pL~~~~~~y~iD~~~LE~~~~~--~~vkl 161 (388)
T COG1168 102 ALTKP--------------GDGVVIQTPVYPPFYNAIKLN----GRKVIENPLVEDDGRYEIDFDALEKAFVD--ERVKL 161 (388)
T ss_pred HhCcC--------------CCeeEecCCCchHHHHHHhhc----CcEEEeccccccCCcEEecHHHHHHHHhc--CCccE
Confidence 88765 788888888888888888877 666665542 399999999986 35689
Q ss_pred EEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC---CCccEEEecCcccccCCc
Q 019931 256 VVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE---RDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 256 Vv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~---~~~Div~~SlsKa~G~~G 328 (334)
++.++|+||+|.+-. |.+|.+||++||+++|.||+|+-.+++.+ +.+. ...+. .+..|.+.|-||+|+..|
T Consensus 162 ~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~-~h~~-~a~ls~~~a~~~it~~saSKtFNlaG 238 (388)
T COG1168 162 FILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGH-KHIP-FASLSERFADNSITLTSASKTFNLAG 238 (388)
T ss_pred EEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCC-Cccc-hhhcChhhhcceEEEeeccccccchh
Confidence 999999999998754 88999999999999999999999887532 2111 11222 233477888899998765
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-14 Score=139.49 Aligned_cols=186 Identities=22% Similarity=0.194 Sum_probs=134.2
Q ss_pred CCHHHHHHHHHh-----cCC-CCccccccCchHHHHHHHHHHHhHhCCCc---EEEeccHHHHHHHHHHHHhhhhhhccC
Q 019931 124 SHPTIAKAAARH-----GMG-PRGSALICGYTNYHRLLESCLADLKKKED---CLLCPTGFAANMAVIVAVGNIASLLAG 194 (334)
Q Consensus 124 ~~p~v~~a~~~~-----g~g-~~~sr~~~G~~~~~~~LE~~La~~~g~e~---alv~~sG~~An~~ai~al~~~~~~~~~ 194 (334)
.++.|.+++.++ +.+ ++.+....-.....+++++.+++++|++. ++++++++.++..++.++..+ +
T Consensus 11 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~---~-- 85 (371)
T PF00266_consen 11 MPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNP---L-- 85 (371)
T ss_dssp -BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHH---G--
T ss_pred CCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccc---c--
Confidence 467788876554 222 11121121124677899999999999765 566688888999999888321 0
Q ss_pred CCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCcc
Q 019931 195 DEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFA 269 (334)
Q Consensus 195 ~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~ 269 (334)
.+++.|++....|.+....+.......+.++..++. .|++++++.|.+ ++++|++..+.+.+|...
T Consensus 86 ------~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~---~~~lv~~~~~~~~tG~~~ 156 (371)
T PF00266_consen 86 ------KPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNP---DTRLVSISHVENSTGVRN 156 (371)
T ss_dssp ------TTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHT---TESEEEEESBETTTTBBS
T ss_pred ------ccccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhcc---ccceEEeecccccccEEe
Confidence 137888888889998775555443334788777653 388999999974 899999999999999999
Q ss_pred CHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCc-cEEe
Q 019931 270 PMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQG-GFIA 332 (334)
Q Consensus 270 pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~G-G~i~ 332 (334)
|+++|.++|+++|+++++|.+|+.|... ..+. .++|++++|..|-+|+.| |++.
T Consensus 157 pi~~I~~~~~~~~~~~~vD~~~~~g~~~---------id~~~~~~D~~~~s~~Kl~gp~G~g~l~ 212 (371)
T PF00266_consen 157 PIEEIAKLAHEYGALLVVDAAQSAGCVP---------IDLDELGADFLVFSSHKLGGPPGLGFLY 212 (371)
T ss_dssp SHHHHHHHHHHTTSEEEEE-TTTTTTSS-----------TTTTTESEEEEESTSTTSSSTEEEEE
T ss_pred eeceehhhhhccCCceeEechhcccccc---------ccccccccceeeecccccCCCCchhhhe
Confidence 9999999999999999999999987541 2222 468999999999335566 5544
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-14 Score=140.31 Aligned_cols=198 Identities=15% Similarity=0.054 Sum_probs=133.6
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHHh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al~ 186 (334)
.+.++|+.|.. .+..+|.+++++.+.-.....+ +... ..+|++.||++++. +.+++++++.+++..++.++.
T Consensus 22 ~~~i~l~~~~n-~~~~~~~~~~a~~~~~~~~~~Y----~~~~-~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~ 95 (360)
T PRK07392 22 DAILDFSASIN-PLGPPESVIAAIQSALSALRHY----PDPD-YRELRLALAQHHQLPPEWILPGNGAAELLTWAGRELA 95 (360)
T ss_pred ccEEEeCCcCC-CCCCCHHHHHHHHHHHHHhhcC----CCcC-HHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhC
Confidence 46789998742 3556788888776532221111 1112 35789999999874 457777888888888887654
Q ss_pred hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCCcEEEEEc
Q 019931 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMRKKVVVTD 259 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~~~lVv~e 259 (334)
+ +|.|++..+.+..+...++.. |.+++.++.. +..+++++.+.. .+++++++.
T Consensus 96 -~--------------g~~vlv~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 155 (360)
T PRK07392 96 -Q--------------LRAVYLITPAFGDYRRALRAF----GATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLN 155 (360)
T ss_pred -C--------------CCeEEEECCCcHHHHHHHHHc----CCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEe
Confidence 2 456777778777777777666 7888877643 123455554432 267888888
Q ss_pred CCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 260 SLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 260 ~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
+++||+|.+.+.++|.++++++++ +|+||+|...++..............+. -|+++||||+||..| ||++++
T Consensus 156 nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~-vi~i~S~SK~~~l~GlRiG~~v~~ 231 (360)
T PRK07392 156 NPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPN-LIILRSLTKFYSLPGLRLGYAIAH 231 (360)
T ss_pred CCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCC-EEEEEechhhhcCCchheeeeeCC
Confidence 999999999999999999999985 6779999864432211111111111122 488999999999777 888764
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.8e-16 Score=145.64 Aligned_cols=220 Identities=20% Similarity=0.179 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHccccccccccccCCCCccccccCCCCCCCCcchhcccccccccceeeeechhhhhhhhcccCCCCCCc
Q 019931 9 KWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQISISDSTFQRWLHDVPSSGDEN 88 (334)
Q Consensus 9 ~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 88 (334)
...|+++.++.+++--||.+-|++++++
T Consensus 22 ~~~DPev~~ii~~Ek~RQ~~gieLIaSE---------------------------------------------------- 49 (477)
T KOG2467|consen 22 EEVDPEVHDIIEKEKERQKRGIELIASE---------------------------------------------------- 49 (477)
T ss_pred hhcChHHHHHHHHHHHhhhcceeEeecc----------------------------------------------------
Confidence 3568899999999999999999999887
Q ss_pred ceeecCCCCCcccchhcccceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHH----hHhC
Q 019931 89 EIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLA----DLKK 164 (334)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La----~~~g 164 (334)
||+|...+..-.+. ..++|..|..|.|++.|+ ++.+++|.... +.|+
T Consensus 50 ------------------------NFts~aVmeAlGS~----ltNKYSEGyPG~RYYGGn-e~ID~iE~LCq~RALeaF~ 100 (477)
T KOG2467|consen 50 ------------------------NFTSRAVMEALGSC----LTNKYSEGYPGARYYGGN-EYIDQIELLCQKRALEAFG 100 (477)
T ss_pred ------------------------cchHHHHHHHHhHH----hhcccccCCCcccccCcc-hHHHHHHHHHHHHHHHHhC
Confidence 67665432222222 457899999999999887 55577665433 3456
Q ss_pred CCc----EEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCch-hhHHHHHHhhhcCCcEEE-----E
Q 019931 165 KED----CLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHA-SIIDGIRIAERTKMVEVF-----V 233 (334)
Q Consensus 165 ~e~----alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~-s~~~g~~ls~~~~g~~v~-----~ 233 (334)
.+. +.+. -||+-||+++..+++.| ++-|+--.+-|+ -+.+|.....++-.+.-+ +
T Consensus 101 ldp~kWGVNVQp~SGSPANfavYtall~P--------------h~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmP 166 (477)
T KOG2467|consen 101 LDPEKWGVNVQPYSGSPANFAVYTALLKP--------------HERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMP 166 (477)
T ss_pred CCHHHCceeeccCCCCchhhHHHhhhcCC--------------CCeeeeccCCCCCccccccccCCceeeeeeeecccCc
Confidence 542 4555 69999999999999986 566663332222 233443322111011111 2
Q ss_pred eeC------CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCccccccc
Q 019931 234 YKH------CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 234 ~~~------~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
|.. .|++.||+.....+ ++.+|...+.|+. ..|.++++++|++.|++|++|.||..|++. .|+. .
T Consensus 167 Ykv~~~TG~IDYD~Le~~A~~fr-Pk~iiaG~SaY~R---~~DYaR~R~Iad~~gA~Lm~DMAHISgLVA---A~vi--p 237 (477)
T KOG2467|consen 167 YKVDPSTGYIDYDKLEKTATLFR-PKLIIAGTSAYSR---LIDYARFRKIADKVGAYLMADMAHISGLVA---AGVI--P 237 (477)
T ss_pred eeeCCCCCceehHHHHHHHHhcC-CcEEEeccccchh---hccHHHHHHHHHhcCceeehhhhhHHHHHh---cccC--C
Confidence 222 29999999877653 3345566677766 678899999999999999999999998763 3332 2
Q ss_pred CCCCCccEEEecCcccc-cCCccEEe
Q 019931 308 NCERDVDICVGTLSKAA-GCQGGFIA 332 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~-G~~GG~i~ 332 (334)
++...+|||+.|.+|++ |+.||+|+
T Consensus 238 sPFey~DiVTTTTHKsLRGPRg~mIF 263 (477)
T KOG2467|consen 238 SPFEYCDIVTTTTHKSLRGPRGAMIF 263 (477)
T ss_pred CcccccceeeccccccccCCcceeEE
Confidence 33457899999999999 88999986
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.6e-15 Score=148.83 Aligned_cols=204 Identities=15% Similarity=0.092 Sum_probs=138.7
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHh-Hh-C---C---CcEEEeccHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLAD-LK-K---K---EDCLLCPTGFAANMA 180 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~-~~-g---~---e~alv~~sG~~An~~ 180 (334)
++++|++-++ .++..++.|.++++.. .|. .+....|..++.+++.+.+.+ .. + . +++++++++++|+..
T Consensus 100 ~~~i~l~~g~-p~~~~~~~v~e~~~~~-~~~-~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~ 176 (527)
T PRK09275 100 RDAVSYVRDQ-LGFDADEFVYELVDGI-IGD-NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCY 176 (527)
T ss_pred HHHHhhcCCC-CCCCCCHHHHHHHHHH-hcC-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHH
Confidence 5677887775 7998888888866544 332 355566666666666653332 21 2 1 257788888999999
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCCCCc
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCTMRK 253 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~~~~ 253 (334)
++.+++... ++ ++||.|++..+.+..+...+.+.. .+.+++.++. .|.++|++++. +++
T Consensus 177 ~~~aL~~~~-ll--------~pGD~Vlv~~P~y~~Y~~~~~l~g--~~~~~v~v~~~~~~~f~~d~~~l~~~~~---~~t 242 (527)
T PRK09275 177 IFDSLKENG-LL--------KAGDKIALMTPIFTPYLEIPELPR--YDLEVVHINADEENEWQYPDSELEKLRD---PSI 242 (527)
T ss_pred HHHHHhhhh-cC--------CCCCEEEEeCCChHHHHHHHHHcC--CCeEEEEeecCcccCCCCCHHHHHhhcC---CCC
Confidence 888742100 00 138888888888877777666651 1345555542 26788888765 378
Q ss_pred EEEEEcCCCCCCCCccC---HHHHHHHHHH--cCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc
Q 019931 254 KVVVTDSLFSMDGDFAP---MVELVKLRRK--YGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 254 ~lVv~e~v~n~~G~~~p---L~~L~ela~k--~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G 328 (334)
++|++.+|+||+|.+.+ +++|+++|++ ++++||+||+|...+. ....+. ...++..|++.||||+||+.|
T Consensus 243 kai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~s~~---~~~~~~~I~v~SfSK~f~mtG 317 (527)
T PRK09275 243 KALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD--DFRSLF---AVLPYNTILVYSFSKYFGATG 317 (527)
T ss_pred CEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc--cccCHH---HhCCCCEEEEeehhhhccCcH
Confidence 99998899999999988 7778888964 5999999999986432 111111 122444699999999999988
Q ss_pred ---cEEeeC
Q 019931 329 ---GFIACR 334 (334)
Q Consensus 329 ---G~i~~~ 334 (334)
||++++
T Consensus 318 ~RlG~i~~~ 326 (527)
T PRK09275 318 WRLGVIALH 326 (527)
T ss_pred hHHhhhhcC
Confidence 888764
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-14 Score=138.85 Aligned_cols=190 Identities=15% Similarity=0.090 Sum_probs=128.7
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC--CCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM--GPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVA 184 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~--g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~a 184 (334)
..+++|..|. ..+..+|.+++++.+.-. ....+. ..| ..+|+++++++++. +++++++++++++..++.+
T Consensus 18 ~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~g----~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~ 91 (337)
T PRK03967 18 NYRIWLDKNE-NPFDLPEELKEEIFEELKRVPFNRYP-HIT----SDPLREAIAEFYGLDAENIAVGNGSDELISYLVKL 91 (337)
T ss_pred CceEEecCCC-CCCCCCHHHHHHHHHHhhcCccccCC-CCC----HHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHH
Confidence 5678998886 245667888887765432 122222 112 36788999999984 4566667777777666554
Q ss_pred HhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEc
Q 019931 185 VGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTD 259 (334)
Q Consensus 185 l~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e 259 (334)
+ + +|.|++..+.|.......+.. |.+++.++. .|++.+++.+. ++++|++.
T Consensus 92 ~--~--------------gd~V~v~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~~~----~~~~v~~~ 147 (337)
T PRK03967 92 F--E--------------GKHIVITPPTFGMYSFYAKLN----GIPVIDVPLKEDFTIDGERIAEKAK----NASAVFIC 147 (337)
T ss_pred h--C--------------CCeEEEeCCChHHHHHHHHHc----CCeEEEeecCCCCCcCHHHHHHhcc----CCCEEEEe
Confidence 3 2 677887777776554444444 778777764 25677776542 56777788
Q ss_pred CCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 260 SLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 260 ~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
+++||+|.+.+.++|.++++ +++++|+||+|... .+. .........++ -|+++||||+||..| ||++++
T Consensus 148 ~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~-~~~---~~~~~~~~~~~-vi~l~S~SK~~~l~GlRiG~iv~~ 219 (337)
T PRK03967 148 SPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEF-SGK---SLIGLIDEYPN-LILLRTFSKAFGLAGIRAGYAIAN 219 (337)
T ss_pred CCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhh-ccc---chHHHHhhCCC-EEEEecchHhhcchhhhheeeecC
Confidence 99999999999999999995 79999999999852 221 11111111123 488999999999766 898764
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=140.25 Aligned_cols=203 Identities=20% Similarity=0.221 Sum_probs=146.5
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNI 188 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~ 188 (334)
...+||-|.- +-- ...+.++++.+...|.. ++|..+...+||++.|+++|+|+++|++||++.|+.+|+.-+..
T Consensus 21 ~~~vDLRSDT-vT~-PTdeMr~am~eA~vgDd----VyGeD~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~~ 94 (384)
T KOG1368|consen 21 HRSVDLRSDT-VTV-PTDEMRRAMAEASVGDD----VYGEDPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQ 94 (384)
T ss_pred eecccccccc-ccC-ChHHHHHHHhhcccCcc----cccCCccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhcC
Confidence 3445555543 222 23456777777777754 78888989999999999999999999999999999999998874
Q ss_pred hhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCC-----CCcEEEEE
Q 019931 189 ASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCT-----MRKKVVVT 258 (334)
Q Consensus 189 ~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~-----~~~~lVv~ 258 (334)
++..|+++..+|.-.+..--++... ++.+..+.. .|++++|+.++..+ +.|++|.+
T Consensus 95 -------------rg~eii~gd~~HI~~~E~gg~s~l~-gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIcl 160 (384)
T KOG1368|consen 95 -------------RGSEIIVGDRAHIHRYEQGGISQLA-GVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICL 160 (384)
T ss_pred -------------CCceEEeccchheeehhccChhhhc-cceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEe
Confidence 4788999999987655433333211 565655542 27999999998432 47899999
Q ss_pred cCCCCCCC-CccCHH---HHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC-CccEEee
Q 019931 259 DSLFSMDG-DFAPMV---ELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC-QGGFIAC 333 (334)
Q Consensus 259 e~v~n~~G-~~~pL~---~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~-~GG~i~~ 333 (334)
|..++..| .+.||+ ++.++|+++|+.|..|.|..+..--..|-++-+. -..+|-+-.+|||++|. .|.+|+|
T Consensus 161 ENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i---~~~fDSVsiCLSKglgAPVGSViVG 237 (384)
T KOG1368|consen 161 ENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKI---CSAFDSVSICLSKGLGAPVGSVIVG 237 (384)
T ss_pred eccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHH---HHhhhhhhhhhhccCCCCcccEEEc
Confidence 99998766 888865 5788999999999999987754321112222111 13346666789999986 7888887
Q ss_pred C
Q 019931 334 R 334 (334)
Q Consensus 334 ~ 334 (334)
|
T Consensus 238 ~ 238 (384)
T KOG1368|consen 238 S 238 (384)
T ss_pred c
Confidence 5
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=139.60 Aligned_cols=194 Identities=12% Similarity=0.059 Sum_probs=137.0
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC-CC-CccccccCchHHHHHHHHHHHhHhCCC---cEEEeccHHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM-GP-RGSALICGYTNYHRLLESCLADLKKKE---DCLLCPTGFAANMAVIV 183 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~-g~-~~sr~~~G~~~~~~~LE~~La~~~g~e---~alv~~sG~~An~~ai~ 183 (334)
+.+++|+.|+. .+..+|.+++++.+.-. +. ..+.. . ...+|++.++++++.+ .+++++++.+++..++.
T Consensus 26 ~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Y~~-~----~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~ 99 (356)
T PRK04870 26 TGMVKLDAMEN-PYRLPAELRAELGERLAEVALNRYPD-P----RAAALKAALRAAMGVPAGADVLLGNGSDELIQLLAL 99 (356)
T ss_pred CCceeCcCCCC-CCCCCHHHHHHHHHHhhccccccCCC-C----CHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHH
Confidence 57889988763 67778999998876432 11 11211 1 2377999999999853 35555555677777777
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEE
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVT 258 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~ 258 (334)
+++.+ ||.|++..+.+......++.. |++++.++.+ |+++|+++++. .++++|++
T Consensus 100 ~~~~~--------------gd~vlv~~P~y~~~~~~~~~~----g~~~~~i~~~~~~~~d~~~l~~~~~~--~~~~~v~l 159 (356)
T PRK04870 100 ACAKP--------------GATVLAPEPGFVMYRMSAKLA----GLEFVGVPLTADFTLDLPAMLAAIAE--HRPALVFL 159 (356)
T ss_pred HhcCC--------------CCEEEECCCCHHHHHHHHHHc----CCEEEEecCCCCCCCCHHHHHHHhhc--CCCCEEEE
Confidence 77654 788888888887776666655 8888887643 78889888864 26788888
Q ss_pred cCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 259 DSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 259 e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
.+++||+|.+.+.+++.++++..++++|+||+|.. +... .......-.+ ..|++.|||| +|+.| ||++++
T Consensus 160 ~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~--~~~~--~~~~~~~~~~-~vi~~~S~SK-~~~~GlRiG~~i~~ 232 (356)
T PRK04870 160 AYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQP--FAGD--SWLPRLARFP-NLLVMRTVSK-LGLAGLRLGYLAGH 232 (356)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchh--hcCc--chHHHHhhCC-CEEEEecchh-hhhHHHhhhhhhCC
Confidence 89999999999998888888877899999999974 2211 1111111112 2489999999 88766 887653
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=142.87 Aligned_cols=181 Identities=19% Similarity=0.142 Sum_probs=130.9
Q ss_pred CCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--c-EEEeccHHHHHHHHHHHHhhhhhhccCCCccCC
Q 019931 124 SHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--D-CLLCPTGFAANMAVIVAVGNIASLLAGDEKSFK 200 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~-alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~ 200 (334)
-+++|++++.++-.+.. + .+.....+++++.+++++|.+ . +++.++|+.++..++..+.++
T Consensus 20 ~~~~V~~a~~~~~~~~~-~---~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~~------------ 83 (401)
T PLN02409 20 IPERVLRAMNRPNEDHR-S---PAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLSP------------ 83 (401)
T ss_pred CCHHHHHHhcCCCCCCC-C---HHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCCC------------
Confidence 47888888766443321 1 123467789999999999864 2 466688899998888776654
Q ss_pred CCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCC-CCcEEEEEcCCCCCCCCccCHHHH
Q 019931 201 DEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCT-MRKKVVVTDSLFSMDGDFAPMVEL 274 (334)
Q Consensus 201 ~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~-~~~~lVv~e~v~n~~G~~~pL~~L 274 (334)
||.|++..+.|.+..- ..... ..|.+++.++.+ |++++++++++.+ +++++|++.++.|++|.+.|+++|
T Consensus 84 --Gd~Vlv~~~~~~~~~~-~~~~~-~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i 159 (401)
T PLN02409 84 --GDKVVSFRIGQFSLLW-IDQMQ-RLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGV 159 (401)
T ss_pred --CCEEEEeCCCchhHHH-HHHHH-HcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHH
Confidence 6777777777766431 12222 126777777642 7899999987531 268899999999999999999999
Q ss_pred HHH--HHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccC-Cc-cEEee
Q 019931 275 VKL--RRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGC-QG-GFIAC 333 (334)
Q Consensus 275 ~el--a~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~-~G-G~i~~ 333 (334)
.++ |+++|+++++|++|+.|.+ ...+. .++|+++.|.+|.|++ .| |++..
T Consensus 160 ~~l~~~~~~g~~~vvD~v~s~g~~---------~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~ 214 (401)
T PLN02409 160 RKLLDCAQHPALLLVDGVSSIGAL---------DFRMDEWGVDVALTGSQKALSLPTGLGIVCA 214 (401)
T ss_pred HHHHhhhccCcEEEEEcccccCCc---------cccccccCccEEEEcCccccCcCCCcceeEE
Confidence 999 9999999999999986532 12222 3679999999999954 55 67654
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-14 Score=137.89 Aligned_cols=195 Identities=13% Similarity=0.083 Sum_probs=127.2
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHHh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al~ 186 (334)
.+++||+.|. ..+..+|.+++++.+....... +.. +...+|+++++++++. +++++++++.+++..++.++
T Consensus 19 ~~~~~l~~~~-~~~~~p~~~~~a~~~~~~~~~~----Y~~-~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~- 91 (354)
T PRK06358 19 NMILDFSANI-NPLGVPESLKQAITENLDKLVE----YPD-PDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVT- 91 (354)
T ss_pred cceEEecCCC-CCCCCCHHHHHHHHHHHHhhhc----CCC-ccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh-
Confidence 4578998874 2334478888877654211111 111 2246899999999875 45777788888888888764
Q ss_pred hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCC-----H-HHHHHHHhcCCCCcEEEEEcC
Q 019931 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCD-----M-SHLKTLLSCCTMRKKVVVTDS 260 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D-----~-~~Le~~l~~~~~~~~lVv~e~ 260 (334)
.+ +. |++..+.+......++.. |++++.++.+. + +++.+.+. .++++|++.+
T Consensus 92 ~~--------------~~-v~i~~P~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~v~~~~ 149 (354)
T PRK06358 92 KP--------------KK-VLILAPTFAEYERALKAF----DAEIEYAELTEETNFAANEIVLEEIK---EEIDLVFLCN 149 (354)
T ss_pred CC--------------Cc-EEEecCChHHHHHHHHHc----CCeeEEEeCccccCCCccHHHHHhhc---cCCCEEEEeC
Confidence 21 33 555666666665555544 77877776421 2 23333333 2578887788
Q ss_pred CCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEee
Q 019931 261 LFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 261 v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
++||+|.+.+ +++|.++|++|++++|+||+|...+++.............++ -|+++||||.||..| ||+++
T Consensus 150 P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~-vi~~~S~SK~~gl~G~RiG~lv~ 227 (354)
T PRK06358 150 PNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKN-LIIIRAFTKFFAIPGLRLGYGLT 227 (354)
T ss_pred CCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCC-EEEEEechhhccCcchhheeeec
Confidence 9999999887 778888999999999999999865443211111111121123 388999999999766 88875
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-14 Score=138.61 Aligned_cols=194 Identities=16% Similarity=0.107 Sum_probs=130.2
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAV 185 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al 185 (334)
++++++|+.|.. .+..+|.+++++.+.-.....+ .. ....+|++.++++++. +++++++++.+++..++.++
T Consensus 19 ~~~~i~l~~~~~-~~~~p~~~~~a~~~~~~~~~~y----~~-~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l 92 (356)
T PRK08056 19 PDQLLDFSANIN-PLGMPVSLKRAIIDNLDCAERY----PD-VEYRHLHQALARHHQVPASWILAGNGETESIFAVVSGL 92 (356)
T ss_pred hhhEEEeccccC-CCCCCHHHHHHHHHHHHhcccC----cC-ccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh
Confidence 477899998853 3556888888776532211111 11 1257899999999985 45677777788887777765
Q ss_pred hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CH-HHHHHHHhcCCCCcEEEEEc
Q 019931 186 GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DM-SHLKTLLSCCTMRKKVVVTD 259 (334)
Q Consensus 186 ~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~-~~Le~~l~~~~~~~~lVv~e 259 (334)
.+ +++|+.+ +.+......++.. |.+++.++.. ++ +++++.+. +++++|++.
T Consensus 93 -~~--------------g~viv~~-P~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~~~~~~~~~~---~~~k~v~l~ 149 (356)
T PRK08056 93 -KP--------------RRAMIVT-PGFAEYRRALQQV----GCEIRRYSLREADGWQLTDAILEALT---PDLDCLFLC 149 (356)
T ss_pred -CC--------------CCEEEeC-CCcHHHHHHHHHc----CCeEEEEecccccCCCccHHHHHhcc---CCCCEEEEe
Confidence 32 5666654 3444444455554 7888887642 22 23334443 478899999
Q ss_pred CCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEee
Q 019931 260 SLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 260 ~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
+++||+|.+.+ +++|+++|+++++++|+||+|...++. +......... .+.+|++.||||+||..| ||+++
T Consensus 150 ~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~--~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~RiG~~v~ 226 (356)
T PRK08056 150 TPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPD--ETGFIPQLAD-NPHLWVLRSLTKFYAIPGLRLGYLVN 226 (356)
T ss_pred CCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCc--chHHHHHhcc-CCCEEEEEechhhccCcchhheeeec
Confidence 99999999988 788999999999999999999754332 2221111111 224689999999999877 88875
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-14 Score=141.62 Aligned_cols=202 Identities=18% Similarity=0.105 Sum_probs=129.1
Q ss_pred eeEEEeecCccCCCCCCHHHHH----HHHHh-cCCCC-ccccccCchHHHHHHHHHHHhHhCC--------CcE----EE
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAK----AAARH-GMGPR-GSALICGYTNYHRLLESCLADLKKK--------EDC----LL 170 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~----a~~~~-g~g~~-~sr~~~G~~~~~~~LE~~La~~~g~--------e~a----lv 170 (334)
...||++..+|.....+|.+.+ +.++. ..+.. .+....|.. +|++++++++.. +.+ ++
T Consensus 48 ~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~----~LR~aia~~~~~~~~~~~~~~~i~~~~i~ 123 (423)
T PLN02397 48 PVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLA----EFNKLSAKLAYGADSPAIKENRVATVQCL 123 (423)
T ss_pred cceEecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCH----HHHHHHHHHHcCCCCchhhcCeeEeeecc
Confidence 4568888888777666664444 43332 22221 344455554 455555554421 122 12
Q ss_pred eccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHH
Q 019931 171 CPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLK 243 (334)
Q Consensus 171 ~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le 243 (334)
.++|..++...+.+++.+ ||.|++..+.+......++.. |++++.++. .|++.++
T Consensus 124 ~g~Ga~~l~~~~~~~~~p--------------Gd~Vlv~~P~y~~y~~~~~~~----g~~~~~v~l~~~~~~~~d~~~l~ 185 (423)
T PLN02397 124 SGTGSLRLGAEFLARFYP--------------GSTIYIPNPTWGNHHNIFRDA----GVPVRTYRYYDPKTRGLDFDGLL 185 (423)
T ss_pred cchHHHHHHHHHHHHhCC--------------CCEEEEeCCCchhHHHHHHHc----CCeEEEeecccCcCCccCHHHHH
Confidence 233444444444444333 788998888888888888777 888887753 2788888
Q ss_pred HHHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcc--cccccCCCCCccEEEe
Q 019931 244 TLLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG--VAEQFNCERDVDICVG 318 (334)
Q Consensus 244 ~~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g--~~~~~~~~~~~Div~~ 318 (334)
+.+++..+++++|+..+++||+|.+.+ +++|+++|++||+++|+||+|...+++..... ....+....+.-|+++
T Consensus 186 ~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~ 265 (423)
T PLN02397 186 EDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQ 265 (423)
T ss_pred HHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEE
Confidence 877643346789999999999999887 66788899999999999999997655321011 1111111112248899
Q ss_pred cCcccccCCc---cEEe
Q 019931 319 TLSKAAGCQG---GFIA 332 (334)
Q Consensus 319 SlsKa~G~~G---G~i~ 332 (334)
||||+|++.| ||++
T Consensus 266 SfSK~~~~~G~RvG~~v 282 (423)
T PLN02397 266 SYAKNMGLYGERVGALS 282 (423)
T ss_pred ECcccCCCccccceEEE
Confidence 9999999877 8863
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-14 Score=136.61 Aligned_cols=178 Identities=16% Similarity=0.164 Sum_probs=125.0
Q ss_pred CHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC---c-EEEeccHHHHHHHHHHHHhhhhhhccCCCccCC
Q 019931 125 HPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE---D-CLLCPTGFAANMAVIVAVGNIASLLAGDEKSFK 200 (334)
Q Consensus 125 ~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e---~-alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~ 200 (334)
.|.+++++.+.- +... ..+....+++++++++++|.+ . ++++++|+.++..++.++..+
T Consensus 17 ~~~~~~a~~~~~-~~~~----~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~------------ 79 (368)
T PRK13479 17 SRTVREAMLRDW-GSWD----DDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPR------------ 79 (368)
T ss_pred CHHHHHHhCCCC-CCCC----hHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCC------------
Confidence 677777765432 2211 112357799999999999974 2 456689999999999988754
Q ss_pred CCCeEEEEcCCCchhh-HHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHH
Q 019931 201 DEKIAIFSDALNHASI-IDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVEL 274 (334)
Q Consensus 201 ~~gd~Vl~d~~~H~s~-~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L 274 (334)
++++|+.+..++... ...++.. |.+++.++. .|++++++.+++. .++++|++.++.|++|.+.|+++|
T Consensus 80 -~~~vlv~~~~~~~~~~~~~~~~~----g~~~~~i~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~~~~~i 153 (368)
T PRK13479 80 -DGKVLVPDNGAYGARIAQIAEYL----GIAHVVLDTGEDEPPDAAEVEAALAAD-PRITHVALVHCETTTGILNPLDEI 153 (368)
T ss_pred -CCeEEEEeCCchHHHHHHHHHHc----CCcEEEEECCCCCCCCHHHHHHHHHhC-CCCcEEEEEcccCccccccCHHHH
Confidence 245555554333332 2222322 677776653 3789999988753 256788888999999999999999
Q ss_pred HHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccc-cCCc-cEEeeC
Q 019931 275 VKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAA-GCQG-GFIACR 334 (334)
Q Consensus 275 ~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~-G~~G-G~i~~~ 334 (334)
.++|+++|+++++|++|++|.. . ..+. .++|++++|++|.+ |+.| ||+.++
T Consensus 154 ~~l~~~~~~~livDa~~~~g~~---~------~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~ 207 (368)
T PRK13479 154 AAVAKRHGKRLIVDAMSSFGAI---P------IDIAELGIDALISSANKCIEGVPGFGFVIAR 207 (368)
T ss_pred HHHHHHcCCEEEEEcccccCCc---c------ccccccCceEEEecCccccccCCCceEEEEC
Confidence 9999999999999999876532 1 1222 35789999999987 6667 887653
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.2e-14 Score=138.96 Aligned_cols=201 Identities=15% Similarity=0.146 Sum_probs=126.2
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhcCC------CCccccccCchHHHHHHHHHHHhHh---C--CCcEEEeccHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHGMG------PRGSALICGYTNYHRLLESCLADLK---K--KEDCLLCPTGFA 176 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g------~~~sr~~~G~~~~~~~LE~~La~~~---g--~e~alv~~sG~~ 176 (334)
++.+++|+.++ ..+...|.+++++.+.-.. ...+....|. .+|++++|+++ + .+++++++++.+
T Consensus 32 ~~~~i~l~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~----~~lr~aia~~~~~~~~~~d~I~it~Ga~~ 106 (402)
T TIGR03542 32 SADIIRLGIGD-TTQPLPASVIEAFHNAVDELASEETFRGYGPEQGY----PFLREAIAENDYRGRIDPEEIFISDGAKC 106 (402)
T ss_pred CCCeEEcCCCC-CCCCCCHHHHHHHHHHHhcccccccccCCCCCCCC----HHHHHHHHHHHHhcCCCHHHEEECCCcHH
Confidence 36789999886 3555678888866543211 0111122333 55667777654 2 345666677777
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCc-----------EEEEeeCCCHHHHHHH
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMV-----------EVFVYKHCDMSHLKTL 245 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~-----------~v~~~~~~D~~~Le~~ 245 (334)
++..+ ..+..+ ||.|++..+.+......++.. |+ +++.++....+.+..-
T Consensus 107 al~~l-~~l~~~--------------gd~Vlv~~P~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 167 (402)
T TIGR03542 107 DVFRL-QSLFGS--------------DNTVAVQDPVYPAYVDSNVMA----GRAGVLDDDGRYSKITYLPCTKENNFIPD 167 (402)
T ss_pred HHHHH-HHhcCC--------------CCEEEEeCCCCcchHHHHHHc----CCccccccccccceEEEeecchhhCCCCC
Confidence 77664 444443 677887777777776666655 66 7776664311111111
Q ss_pred HhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCC-cccccccCCCCCccEEEecCc
Q 019931 246 LSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNG-GGVAEQFNCERDVDICVGTLS 321 (334)
Q Consensus 246 l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G-~g~~~~~~~~~~~Div~~Sls 321 (334)
+.. ..++++|++.+++||+|.+.+ +++|+++|++|+++||+||+|...+++..- ..+....+ ..+..|+++|||
T Consensus 168 ~~~-~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~-~~~~vi~~~SfS 245 (402)
T TIGR03542 168 LPE-EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPG-AKECAIEFRSFS 245 (402)
T ss_pred ccc-cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCC-CcccEEEEecCc
Confidence 111 136788888899999999988 778999999999999999999865443210 11111111 112347799999
Q ss_pred ccccCCc---cEEeeC
Q 019931 322 KAAGCQG---GFIACR 334 (334)
Q Consensus 322 Ka~G~~G---G~i~~~ 334 (334)
|.||..| ||++++
T Consensus 246 K~~g~pGlRiG~~i~~ 261 (402)
T TIGR03542 246 KTAGFTGVRLGWTVVP 261 (402)
T ss_pred cccCCCCcceEEEEec
Confidence 9999877 898764
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-14 Score=149.96 Aligned_cols=204 Identities=13% Similarity=0.097 Sum_probs=142.0
Q ss_pred ccceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC-----cEEEeccHHHHHHH
Q 019931 106 RQFKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE-----DCLLCPTGFAANMA 180 (334)
Q Consensus 106 ~~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e-----~alv~~sG~~An~~ 180 (334)
.+|..+|++..|+ ..+..+|.+++++.+.-... ....|+.++...+.+.+++.+|.+ .+++.++..+++..
T Consensus 694 ~~g~~vI~LsinE-~d~ppPp~V~eAi~eal~~~---~~s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~l 769 (1082)
T PLN02672 694 SQESSLIHMDVDE-SFLPVPSAVKASIFESFVRQ---NISESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNK 769 (1082)
T ss_pred cCCCCEEEEeCCC-CCCCCCHHHHHHHHHHHhhc---CCCCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHH
Confidence 3457899999987 46778899999876532111 113355677788999999987742 34444555556667
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCCc
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMRK 253 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~~ 253 (334)
++.+++++ ||.|++..+.+..+...++.. |++++.++.. |++.|++++++. ++
T Consensus 770 ll~aLl~p--------------GD~VLVp~PtY~~Y~~~a~~~----Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~--~~ 829 (1082)
T PLN02672 770 LVLCCVQE--------------GGTLCFPAGSNGTYVSAAKFL----KANFRRIPTKSSDGFKLTAKTLASTLETV--KK 829 (1082)
T ss_pred HHHHHcCC--------------CCEEEEeCCChHHHHHHHHHc----CCEEEEEecccccCCCCCHHHHHHHhccC--CC
Confidence 77877764 788888888888888777777 8888888742 567888888541 23
Q ss_pred EEEEEcCCC-CCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcc---c---ccccCCC-C-CccEEEecCc
Q 019931 254 KVVVTDSLF-SMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG---V---AEQFNCE-R-DVDICVGTLS 321 (334)
Q Consensus 254 ~lVv~e~v~-n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g---~---~~~~~~~-~-~~Div~~Sls 321 (334)
++|++.+++ ||+|.+.+ +++|+++|++||++||+||+|+...+...... + ...+... + ..-|+++|||
T Consensus 830 ~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfS 909 (1082)
T PLN02672 830 PWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLS 909 (1082)
T ss_pred CEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcH
Confidence 456666665 99999877 67788899999999999999986555321110 1 0011100 1 1237889999
Q ss_pred ccccCCc---cEEee
Q 019931 322 KAAGCQG---GFIAC 333 (334)
Q Consensus 322 Ka~G~~G---G~i~~ 333 (334)
|.|++.| ||+++
T Consensus 910 Kkf~lpGLRIGylIa 924 (1082)
T PLN02672 910 TELLSGGHEFGFLAL 924 (1082)
T ss_pred HhhccHHHHheeEEe
Confidence 9999877 99886
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.4e-14 Score=136.41 Aligned_cols=198 Identities=16% Similarity=0.092 Sum_probs=133.2
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHh-cCCC--CccccccCchHHHHHHHHHHHhHhCC----------CcEEEeccHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARH-GMGP--RGSALICGYTNYHRLLESCLADLKKK----------EDCLLCPTGF 175 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~-g~g~--~~sr~~~G~~~~~~~LE~~La~~~g~----------e~alv~~sG~ 175 (334)
..+++|.+|+ ..+..+|.+++++.+. ..+. ..+. ..| ..+|+++|+++++. +.+++++++.
T Consensus 28 ~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~G----~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~ 101 (374)
T PRK02610 28 IQLDRLDTNE-FPYDLPPDLKQKLAWLYQQGIESNRYP-DGG----HEALKQAIAEYVNESAAGSSQITPANISVGNGSD 101 (374)
T ss_pred cceeEecCCC-CCCCCCHHHHHHHHHHHhhcccccCCC-CCc----hHHHHHHHHHHhCccccccCCCCHHHEEEcCChH
Confidence 3588999987 4677889999987653 2221 1221 123 35677777777652 3467777778
Q ss_pred HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC------CCHHHHHHHHhcC
Q 019931 176 AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH------CDMSHLKTLLSCC 249 (334)
Q Consensus 176 ~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~------~D~~~Le~~l~~~ 249 (334)
+++..++.+++.+ +++.|++..+.+..+...++.. |.+++.++. .|+++|++++++.
T Consensus 102 ~al~~~~~~~~~~-------------g~~~Vlv~~P~y~~~~~~~~~~----g~~~~~~~~~~~~~~~d~~~l~~~~~~~ 164 (374)
T PRK02610 102 ELIRSLLIATCLG-------------GEGSILVAEPTFSMYGILAQTL----GIPVVRVGRDPETFEIDLAAAQSAIEQT 164 (374)
T ss_pred HHHHHHHHHHcCC-------------CCCeEEEcCCChHHHHHHHHHc----CCEEEEecCCcccCCCCHHHHHHHHHhh
Confidence 8887777766653 1236777778777777666666 788888763 2688898888642
Q ss_pred -CCCcEEEEEcCCCCCCCCccCHHHHHHHHHH-cCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCC
Q 019931 250 -TMRKKVVVTDSLFSMDGDFAPMVELVKLRRK-YGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQ 327 (334)
Q Consensus 250 -~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k-~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~ 327 (334)
.+++++|++.+++||+|.+.+.+++.++.+- +++++|+||+|.... + ..........++ -|+++||||+||+.
T Consensus 165 ~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~-~---~~~~~~~~~~~~-~ivi~SfSK~~g~~ 239 (374)
T PRK02610 165 QNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFS-Q---TTLVGELAQHPN-WVILRTFSKAFRLA 239 (374)
T ss_pred cCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccC-c---cchHHHHhcCCC-EEEEEecchhccCc
Confidence 1367888888999999999987666655432 489999999997532 1 111111111122 38899999999987
Q ss_pred c---cEEeeC
Q 019931 328 G---GFIACR 334 (334)
Q Consensus 328 G---G~i~~~ 334 (334)
| ||++++
T Consensus 240 GlRiG~~v~~ 249 (374)
T PRK02610 240 AHRVGYAIGH 249 (374)
T ss_pred ccceeeeecC
Confidence 7 898864
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-14 Score=136.98 Aligned_cols=154 Identities=21% Similarity=0.180 Sum_probs=107.6
Q ss_pred HHHHHHHHHhHhCCC-cEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcE
Q 019931 152 HRLLESCLADLKKKE-DCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVE 230 (334)
Q Consensus 152 ~~~LE~~La~~~g~e-~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~ 230 (334)
..+|++.+++++|.+ ..+++++|+++...++..++.+ ++ |++..+.|..+...+... |.+
T Consensus 49 ~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l~~--------------g~-vl~~~p~y~~~~~~~~~~----g~~ 109 (330)
T TIGR01140 49 YDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLLAP--------------GR-VLVLAPTYSEYARAWRAA----GHE 109 (330)
T ss_pred HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhCC--------------Ce-EEEeCCCcHHHHHHHHHc----CCE
Confidence 378999999999964 4455555554444444333432 55 444456666666665544 788
Q ss_pred EEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCccccccc
Q 019931 231 VFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 231 v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
++.++ |++.++++++ ++++|++++++||+|.+.+ +++|+++|+++|+++|+||+|...... ..+....
T Consensus 110 ~~~~~--d~~~l~~~~~----~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~---~~~~~~~ 180 (330)
T TIGR01140 110 VVELP--DLDRLPAALE----ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD---ASLAPQA 180 (330)
T ss_pred EEEeC--CHHHHHhhcc----cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc---cchhhHh
Confidence 88887 8999988874 4568888889999999999 666788889999999999999854332 1221111
Q ss_pred CCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 308 NCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
+ ..+.+|+++||||+||..| ||++++
T Consensus 181 ~-~~~~~i~~~S~SK~~g~~G~R~G~i~~~ 209 (330)
T TIGR01140 181 A-RFPGLVVLRSLTKFFGLAGLRLGFVVAH 209 (330)
T ss_pred c-cCCCEEEEEecchhhcCchhhhhheeCC
Confidence 1 1234699999999999777 888764
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.5e-14 Score=142.62 Aligned_cols=171 Identities=16% Similarity=0.179 Sum_probs=118.0
Q ss_pred ccCchHHHHHHHHHHHhHhC------CCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHH
Q 019931 145 ICGYTNYHRLLESCLADLKK------KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIID 218 (334)
Q Consensus 145 ~~G~~~~~~~LE~~La~~~g------~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~ 218 (334)
..|...+.+++.+.+.+..| .+++++++++++|+..++.+++.+ ||.|++..+.+.....
T Consensus 93 ~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~p--------------GD~Vlv~~P~Y~~~~~ 158 (496)
T PLN02376 93 YHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADP--------------GDVFLIPSPYYAAFDR 158 (496)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCC--------------CCEEEECCCCccchHH
Confidence 34444444444444444333 246777788899999999998875 8889999888887766
Q ss_pred HHHH-hhhcCCcEEEEeeCC-------CHHHHHHHHhcC---CCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCE
Q 019931 219 GIRI-AERTKMVEVFVYKHC-------DMSHLKTLLSCC---TMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFL 284 (334)
Q Consensus 219 g~~l-s~~~~g~~v~~~~~~-------D~~~Le~~l~~~---~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~ 284 (334)
.+.. . |++++.++.. |++++++.+++. ..++++|++.+++||+|.+.+ +++|+++|++|+++
T Consensus 159 ~~~~~~----G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~ 234 (496)
T PLN02376 159 DLRWRT----GVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIH 234 (496)
T ss_pred HHHhhC----CCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 5553 3 7888888751 578887664321 236788888899999999988 66788899999999
Q ss_pred EEEecCcccccccCCC-cccccc---cCC---CCCccEEEecCcccccCCc---cEEee
Q 019931 285 LVLDDAHGTFVCGKNG-GGVAEQ---FNC---ERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 285 LivDeAh~~Gv~G~~G-~g~~~~---~~~---~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
||+||+|+..++.... ..+.+. ++. .++.-+++.||||.||..| ||+++
T Consensus 235 lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~ 293 (496)
T PLN02376 235 LVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYS 293 (496)
T ss_pred EEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEE
Confidence 9999999976553211 111111 011 1122256799999999777 88876
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6e-14 Score=139.64 Aligned_cols=163 Identities=17% Similarity=0.170 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCc
Q 019931 150 NYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMV 229 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~ 229 (334)
+...+||+++++++|.+++++++||++|+..++.+++.+- ++ ....++||.|++..+.|.+....+... |+
T Consensus 63 ~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~--~~---~~~~~pGd~VIv~~~t~~a~~~~v~~~----G~ 133 (438)
T PRK15407 63 RFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPK--LG---DRALKPGDEVITVAAGFPTTVNPIIQN----GL 133 (438)
T ss_pred hhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhcc--cc---ccCCCCCCEEEECCCCcHHHHHHHHHc----CC
Confidence 5578999999999999999999999999999998874210 00 000124889999999999888887766 78
Q ss_pred EEEEeeC------CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCccc
Q 019931 230 EVFVYKH------CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV 303 (334)
Q Consensus 230 ~v~~~~~------~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~ 303 (334)
+++.++. .|++++++++.+ ++++|++.++ .|.+.++++|.++|+++|++||+|++|+.|..- .|+..
T Consensus 134 ~pv~vdvd~~~~~id~~~le~~i~~---~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~-~g~~~ 206 (438)
T PRK15407 134 VPVFVDVELPTYNIDASLLEAAVSP---KTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTY-DGRMT 206 (438)
T ss_pred EEEEEecCCCcCCcCHHHHHHHcCc---CCeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhc-CCeee
Confidence 7777653 278888888864 7888888765 466889999999999999999999999987532 12211
Q ss_pred ccccCCCCCccEEEecC--ccccc-CCccEEeeC
Q 019931 304 AEQFNCERDVDICVGTL--SKAAG-CQGGFIACR 334 (334)
Q Consensus 304 ~~~~~~~~~~Div~~Sl--sKa~G-~~GG~i~~~ 334 (334)
. .+| |+.+.|| +|.+. +.||+|+++
T Consensus 207 G-~~g-----d~~~fSf~~~k~~~~geGG~l~t~ 234 (438)
T PRK15407 207 G-TFG-----DIATLSFYPAHHITMGEGGAVFTN 234 (438)
T ss_pred e-ccC-----ceEEEeCCCCCCccccCceEEEEC
Confidence 1 122 6777788 46664 368998863
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.5e-14 Score=141.75 Aligned_cols=151 Identities=18% Similarity=0.111 Sum_probs=109.5
Q ss_pred CcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHH-hhhcCCcEEEEeeCC-------
Q 019931 166 EDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRI-AERTKMVEVFVYKHC------- 237 (334)
Q Consensus 166 e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~l-s~~~~g~~v~~~~~~------- 237 (334)
+++++++++.+++..++.+++.+ ||.|++..+.+......+.. . |++++.++..
T Consensus 112 ~~Iiit~Ga~~al~~l~~~l~~p--------------Gd~Vlv~~P~Y~~~~~~~~~~~----g~~~v~v~~~~~~~~~~ 173 (468)
T PLN02450 112 NKLVLTAGATSANETLMFCLAEP--------------GDAFLLPTPYYPGFDRDLKWRT----GVEIVPIHCSSSNGFQI 173 (468)
T ss_pred HHeEEccChHHHHHHHHHHhCCC--------------CCEEEECCCCCCchHHHHhhcC----CcEEEEEecCCccCCcC
Confidence 45777788888999999888765 88899888888777665553 4 7888887642
Q ss_pred CHHHHHHHHhcC---CCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCC-Cccccccc---
Q 019931 238 DMSHLKTLLSCC---TMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKN-GGGVAEQF--- 307 (334)
Q Consensus 238 D~~~Le~~l~~~---~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~-G~g~~~~~--- 307 (334)
|++.+++.+++. ..++++|++.+++||+|.+.+ +++|.++|++|+++||+||+|+..++... -.......
T Consensus 174 ~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~ 253 (468)
T PLN02450 174 TESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDR 253 (468)
T ss_pred CHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhc
Confidence 568888877642 236788888899999999988 66788899999999999999986555321 11111111
Q ss_pred ---CC-CCCccEEEecCcccccCCc---cEEeeC
Q 019931 308 ---NC-ERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 308 ---~~-~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
+. ..+.-+++.||||.||..| ||++++
T Consensus 254 ~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~ 287 (468)
T PLN02450 254 KLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSN 287 (468)
T ss_pred ccccCCCCCcEEEEEeccccCCCCCccEEEEEEC
Confidence 11 1223488999999998777 898864
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-14 Score=135.70 Aligned_cols=159 Identities=16% Similarity=0.078 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 151 YHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 151 ~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
...+|+++|++++|. +.+++++++.+++..++. +..+ +++|+. .+.+......++.. |
T Consensus 41 ~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~-~~~~--------------~~vv~~-~P~y~~y~~~~~~~----G 100 (332)
T PRK06425 41 SYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLS-YINV--------------GNIIIV-EPNFNEYKGYAFTH----G 100 (332)
T ss_pred CHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH-HhCC--------------CcEEEe-CCChHHHHHHHHHc----C
Confidence 358899999999985 346677777888887775 4443 566776 56666777777666 8
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCc-ccc
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGG-GVA 304 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~-g~~ 304 (334)
++++.++.++.+...+.+++ .++++|++++++||+|.+.+ +++|+++|+++++++|+||++....++ +. ...
T Consensus 101 ~~v~~vp~~~~~~~~~~l~~--~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~--~~~~~~ 176 (332)
T PRK06425 101 IRISALPFNLINNNPEILNN--YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPN--RAEEDV 176 (332)
T ss_pred CeEEEEeCCcccCcHHHHhh--cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccc--cchhHH
Confidence 88888876422111233432 26788888899999999888 566778889999999999999864332 21 111
Q ss_pred cccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 305 EQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 305 ~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
....-.+ .-|+++||||+||..| ||++++
T Consensus 177 ~~~~~~~-~vi~~~SfSK~~~l~GlRiGy~v~~ 208 (332)
T PRK06425 177 LLNRSYG-NVIIGRSLTKILGIPSLRIGYIATD 208 (332)
T ss_pred HHhccCC-CEEEEeecHHhcCCchhhheeeecC
Confidence 1111112 2488999999999888 998864
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.2e-14 Score=140.77 Aligned_cols=204 Identities=16% Similarity=0.100 Sum_probs=130.4
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHH-HHHHhHhC----C-C--cEEEeccHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLE-SCLADLKK----K-E--DCLLCPTGFAANMA 180 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE-~~La~~~g----~-e--~alv~~sG~~An~~ 180 (334)
++.++++-++ +++..++.+.++++.. .|. .+....|..+..+++- +.+.+..+ . + ++++++++++|+..
T Consensus 94 ~~~i~l~~g~-p~~~~~~~~~~~~~~~-~~~-~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~ 170 (521)
T TIGR03801 94 RDIISYVIDQ-LGFDPDAFLYEMCDGI-IGD-NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCY 170 (521)
T ss_pred HHHHhhcCCC-CCCCCCHHHHHHHHHh-hcC-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHH
Confidence 5667777775 6887555444444432 232 2333344445544443 33333322 1 2 57788889999998
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC------------CCHHHHHHHHhc
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH------------CDMSHLKTLLSC 248 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~------------~D~~~Le~~l~~ 248 (334)
++.+++... ++ .+||.|++..+.+..+...+.+.. .+.+++.++. .|.++|++++.
T Consensus 171 ~~~~l~~~~-ll--------~pGD~Vlv~~P~y~~y~~~~~l~~--~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~- 238 (521)
T TIGR03801 171 IFDSLKANE-LL--------KKGDKIALMTPIFTPYLEIPELPR--YDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD- 238 (521)
T ss_pred HHHHHhHhh-cC--------CCCCEEEEeCCCcHHHHHHHHHhc--CCcEEEEeecccccccccccCCCCHHHHHHhcC-
Confidence 887732100 00 138888888888777776665541 1456655542 15577777654
Q ss_pred CCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHc--CCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccc
Q 019931 249 CTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKY--GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKA 323 (334)
Q Consensus 249 ~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~--ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa 323 (334)
+++++|++.+|+||+|.+.+ +++|+++|++| ++++|+||+|+..+. ....+.. ..++..|++.||||+
T Consensus 239 --~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~sl~~---~~~~~vI~v~SfSK~ 311 (521)
T TIGR03801 239 --PSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD--DFRSLFA---ELPYNTIGVYSFSKY 311 (521)
T ss_pred --CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc--cccchhh---hCCCCEEEEEcchhh
Confidence 37899998899999999988 77788889987 999999999986432 1111211 223345899999999
Q ss_pred ccCCc---cEEeeC
Q 019931 324 AGCQG---GFIACR 334 (334)
Q Consensus 324 ~G~~G---G~i~~~ 334 (334)
||+.| ||++++
T Consensus 312 fg~~G~RlG~i~~~ 325 (521)
T TIGR03801 312 FGATGWRLGTIALH 325 (521)
T ss_pred ccCchhhhhhhhcC
Confidence 99988 888753
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-13 Score=132.31 Aligned_cols=167 Identities=13% Similarity=0.144 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHHhHhCCC--cE--EEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhh
Q 019931 149 TNYHRLLESCLADLKKKE--DC--LLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e--~a--lv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~ 224 (334)
....+++.+.+++++|.+ .+ +++++|++||..++.+.... .++.+|++....|.|+...+++.
T Consensus 65 ~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~------------~~~~~vi~s~~~H~Sv~kaa~~l- 131 (374)
T PLN03032 65 RQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREV------------FPDGILYASRESHYSVFKAARMY- 131 (374)
T ss_pred HHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHh------------CCCcEEEeCCCceeHHHHHHHHc-
Confidence 456677888888889864 33 78899999999888764321 02357888999999999888876
Q ss_pred hcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcC-----CEEEEecCcccc
Q 019931 225 RTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYG-----FLLVLDDAHGTF 294 (334)
Q Consensus 225 ~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~g-----a~LivDeAh~~G 294 (334)
+..+..++. -|+++|++++++...++.+|++...++++|.+.|+++|.++|+++| +|+++|.|++.+
T Consensus 132 ---g~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~ 208 (374)
T PLN03032 132 ---RMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGL 208 (374)
T ss_pred ---CCCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhh
Confidence 444444432 3899999999864335778888888899999999999999999997 599999999876
Q ss_pred cccCCCcccccccCCCCCccEEEecCccccc-CCc-cEEee
Q 019931 295 VCGKNGGGVAEQFNCERDVDICVGTLSKAAG-CQG-GFIAC 333 (334)
Q Consensus 295 v~G~~G~g~~~~~~~~~~~Div~~SlsKa~G-~~G-G~i~~ 333 (334)
.+--... ...+.....+|.++.|.+|.+| +.| |++..
T Consensus 209 ~~p~~~~--~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~ 247 (374)
T PLN03032 209 MMPFVSR--APEVTFRKPIGSVSVSGHKFLGCPMPCGVALT 247 (374)
T ss_pred hhhccCC--CcccCCCcCCcEEEECcccccCCCcCeEEEEE
Confidence 4421000 0112223358999999999998 555 55543
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.2e-14 Score=134.28 Aligned_cols=192 Identities=10% Similarity=0.012 Sum_probs=131.8
Q ss_pred cceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhC-----CCcEEEeccHHHHHHHH
Q 019931 107 QFKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKK-----KEDCLLCPTGFAANMAV 181 (334)
Q Consensus 107 ~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g-----~e~alv~~sG~~An~~a 181 (334)
.++..++|+.|+ -.+..+|.+++++.+.-.....++ +. .+...+|+++++++++ .+++++++++.+++..+
T Consensus 17 ~~~~~i~l~~~~-~~~~~p~~~~~~~~~~~~~~~~~~-Y~--~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~ 92 (335)
T PRK14808 17 EKRDRTYLALNE-NPFPFPEDLVDEVFRRLNSDTLRI-YY--DSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVM 92 (335)
T ss_pred CCCceeEecCCC-CCCCCCHHHHHHHHHHhhhhhhhc-CC--CCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHH
Confidence 447889999887 467778999997765322111111 11 1234778899999887 34567777788888888
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCC-HHHHHHHHhcCCCCcEEEEEcC
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCD-MSHLKTLLSCCTMRKKVVVTDS 260 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D-~~~Le~~l~~~~~~~~lVv~e~ 260 (334)
+.++ |.|++..+.+..+...++.. |.+++.++..+ ....+..+ .++++|++.+
T Consensus 93 ~~~~------------------d~v~v~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~~~~----~~~~~i~i~n 146 (335)
T PRK14808 93 MLMF------------------DRSVFFPPTYSCYRIFAKAV----GAKFLEVPLTKDLRIPEVNV----GEGDVVFIPN 146 (335)
T ss_pred HHHh------------------CcEEECCCCHHHHHHHHHHc----CCeEEEecCCCcCCCChhHc----cCCCEEEEeC
Confidence 7754 12666778888888777777 88888887531 10001112 1468999999
Q ss_pred CCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 261 LFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 261 v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
++||+|.+.+.+++.+|+ +++++||+||+|... .+. .........+. -|+++||||+||..| ||++++
T Consensus 147 P~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f-~~~---~~~~~~~~~~~-vi~~~S~SK~~~l~GlRvG~~v~~ 217 (335)
T PRK14808 147 PNNPTGHVFEREEIERIL-KTGAFVALDEAYYEF-HGE---SYVDLLKKYEN-LAVIRTFSKAFSLAAQRIGYVVSS 217 (335)
T ss_pred CCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhh-cCC---chHHHHHhCCC-EEEEEechhhccCcccceEEEEeC
Confidence 999999999999999998 589999999999852 221 11111111122 488999999999888 999874
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=133.15 Aligned_cols=192 Identities=19% Similarity=0.128 Sum_probs=136.7
Q ss_pred eEEEeecCc-cCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhC-CC--cEEEeccHHHHHHHHHHHH
Q 019931 110 RLLLFSGND-YLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKK-KE--DCLLCPTGFAANMAVIVAV 185 (334)
Q Consensus 110 ~~l~f~sn~-yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g-~e--~alv~~sG~~An~~ai~al 185 (334)
..++|++|. .+|. +|.+++++++..... .|+-- +...+|+++++++++ .+ .+++.++..+.+..+++++
T Consensus 23 ~~i~LssNenP~gp--~~~~~~~~~~~~~~~--~rYPd---~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~ 95 (356)
T COG0079 23 GIIKLSSNENPYGP--PPKVIEAIRAALDKL--NRYPD---PDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAF 95 (356)
T ss_pred cceeecCCCCCCCC--CHHHHHHHHHHHHhh--ccCCC---CcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHh
Confidence 588999994 4554 588888776543211 12211 235889999999998 43 4555677778888888877
Q ss_pred hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC----CCHHHHHHHHhcCCCCcEEEEEcCC
Q 019931 186 GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH----CDMSHLKTLLSCCTMRKKVVVTDSL 261 (334)
Q Consensus 186 ~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~----~D~~~Le~~l~~~~~~~~lVv~e~v 261 (334)
+.+ ||.|+...+.+......++.. |++++.++. .|++.+...+.+ ++++|++++|
T Consensus 96 ~~~--------------gd~vl~~~Ptf~~Y~~~a~~~----g~~~~~v~~~~~~~d~~~~~~~~~~---~~~lv~i~nP 154 (356)
T COG0079 96 VEP--------------GDTVLIPEPTFSMYEIAAQLA----GAEVVKVPLKEFRLDLDAILAAIRD---KTKLVFLCNP 154 (356)
T ss_pred hcC--------------CCEEEEcCCChHHHHHHHHhc----CCeEEEecccccccCHHHHHHhhhc---CCCEEEEeCC
Confidence 764 677887777777666666666 888888876 466777666654 6899999999
Q ss_pred CCCCCCccCHHHHHHHHHHc--CCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 262 FSMDGDFAPMVELVKLRRKY--GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 262 ~n~~G~~~pL~~L~ela~k~--ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
+||+|...+.++|.++++.. +.+||+|||+.- |.+ ........ .++.-|++-||||+||..| ||++++
T Consensus 155 NNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~e--F~~--~~~~~l~~-~~~nlivlRTfSKa~gLAGlRlGy~ia~ 227 (356)
T COG0079 155 NNPTGTLLPREELRALLEALPEGGLVVIDEAYIE--FSP--ESSLELLK-YPPNLIVLRTFSKAFGLAGLRVGYAIAN 227 (356)
T ss_pred CCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhh--cCC--chhhhhcc-CCCCEEEEEecHHhhhcchhceeeccCC
Confidence 99999999988888888765 789999999986 332 11111111 2222388999999999988 887653
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.5e-14 Score=146.74 Aligned_cols=160 Identities=18% Similarity=0.121 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhHhCCCcEEEeccH-HHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 150 NYHRLLESCLADLKKKEDCLLCPTG-FAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~e~alv~~sG-~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
-...+.|+.+|+++|++++.+..+| +.+|.+++.+++++ ||.|++++.+|.|+.+++.++ +
T Consensus 205 G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~~--------------gd~Vlv~RN~HKSv~~al~L~----g 266 (755)
T PRK15029 205 GAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTD--------------NDVVVVDRNCHKSIEQGLILT----G 266 (755)
T ss_pred cHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcCC--------------CCEEEeecccHHHHHHHHHHc----C
Confidence 3458999999999999998776544 67899999988865 899999999999999999999 8
Q ss_pred cEEEEeeC----------CC-----HHHHHHHHhcCCCC-------c-EEEEEcCCCCCCCCccCHHHHHHHHHHcCCEE
Q 019931 229 VEVFVYKH----------CD-----MSHLKTLLSCCTMR-------K-KVVVTDSLFSMDGDFAPMVELVKLRRKYGFLL 285 (334)
Q Consensus 229 ~~v~~~~~----------~D-----~~~Le~~l~~~~~~-------~-~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~L 285 (334)
++++++.. .+ ++.+++.|++.+.. + .+|++.+.| +|.+.++++|+++|+++|+.|
T Consensus 267 a~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY--~Gv~~di~~I~~~~h~~~~~l 344 (755)
T PRK15029 267 AKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY--DGVCYNAKEAQDLLEKTSDRL 344 (755)
T ss_pred CeEEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC--cceeeCHHHHHHHHHhcCCeE
Confidence 88777642 13 88999999775421 1 355555544 899999999999999999999
Q ss_pred EEecCcccccccCCCcccccccCC-----C-CCcc-EEEecCcccccC--CccEE
Q 019931 286 VLDDAHGTFVCGKNGGGVAEQFNC-----E-RDVD-ICVGTLSKAAGC--QGGFI 331 (334)
Q Consensus 286 ivDeAh~~Gv~G~~G~g~~~~~~~-----~-~~~D-iv~~SlsKa~G~--~GG~i 331 (334)
+|||||+.- ++-. ..+..+..+ . .++| +++-|.+|++++ +|+++
T Consensus 345 lvDEAhGah-~~F~-~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~L 397 (755)
T PRK15029 345 HFDEAWYGY-ARFN-PIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYI 397 (755)
T ss_pred EEECccccc-cccC-ccccccccccccccccCCCceEEEEchhhcccchhhhhhh
Confidence 999999853 2211 111111223 2 4577 999999999986 34443
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.9e-14 Score=148.78 Aligned_cols=161 Identities=14% Similarity=0.086 Sum_probs=128.7
Q ss_pred ccCchHHHHHHHHHHHhHhCCCcEEEeccHH----HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHH
Q 019931 145 ICGYTNYHRLLESCLADLKKKEDCLLCPTGF----AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGI 220 (334)
Q Consensus 145 ~~G~~~~~~~LE~~La~~~g~e~alv~~sG~----~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~ 220 (334)
..|+.....++++.|++++|.+.+.+.++++ .|+..+++++.++ +++ +..++|++....|++....+
T Consensus 563 ~~g~~~~~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~-----~Gd----~~r~~vli~~~aH~sn~a~a 633 (993)
T PLN02414 563 AQGYQEMFEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLS-----RGD----HHRNVCIIPVSAHGTNPASA 633 (993)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhc-----cCC----CCCCEEEeCCCcCccCHHHH
Confidence 4567788899999999999998888886555 6888888887653 000 01238888899999988777
Q ss_pred HHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCccccc
Q 019931 221 RIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFV 295 (334)
Q Consensus 221 ~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv 295 (334)
... |.+++.++.+ |+++|++++++.++++++|++..++|..|...|+++|.++|+++|+++++|.||..+.
T Consensus 634 ~~~----G~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~ 709 (993)
T PLN02414 634 AMC----GMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQ 709 (993)
T ss_pred HHC----CCEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhc
Confidence 765 8888888753 8999999998654478999999999999999999999999999999999999998765
Q ss_pred ccCCCcccccccCCCCCccEEEecCccccc
Q 019931 296 CGKNGGGVAEQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 296 ~G~~G~g~~~~~~~~~~~Div~~SlsKa~G 325 (334)
.+..- .-.-++||+++|.+|+|+
T Consensus 710 ~~l~~-------p~~~GaD~~~~s~HK~f~ 732 (993)
T PLN02414 710 VGLTS-------PGFIGADVCHLNLHKTFC 732 (993)
T ss_pred cCcCC-------ccccCCCEEEecCCccCC
Confidence 43211 112468999999999886
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-13 Score=132.86 Aligned_cols=166 Identities=14% Similarity=0.160 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHHhHhCCC--c--EEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhh
Q 019931 149 TNYHRLLESCLADLKKKE--D--CLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e--~--alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~ 224 (334)
....+++.+.+++++|.+ . ..++++|+++|..++.+.... .+++.|++....|.|+...++..
T Consensus 64 ~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~------------~~~~~ii~s~~~H~Sv~ka~~~l- 130 (380)
T PRK02769 64 FDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLAREL------------FPDGTLYYSKDTHYSVSKIARLL- 130 (380)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHh------------CCCcEEEeCCCceehHHHHHHHc-
Confidence 455567778889999864 3 367788899998776543321 13578888899999998888766
Q ss_pred hcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcC---CEEEEecCcccccc
Q 019931 225 RTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYG---FLLVLDDAHGTFVC 296 (334)
Q Consensus 225 ~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~g---a~LivDeAh~~Gv~ 296 (334)
+.+...++. .|+++|++++++.+.++++|++...++++|.+.|+++|.++|++|| +++++|.||+.+++
T Consensus 131 ---g~~~~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~ 207 (380)
T PRK02769 131 ---RIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMIL 207 (380)
T ss_pred ---CCCCceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceee
Confidence 333333332 3899999999875445889999999999999999999999999998 69999999997754
Q ss_pred cCCCcccccccCCCCCccEEEecCccccc-CCc-cEEe
Q 019931 297 GKNGGGVAEQFNCERDVDICVGTLSKAAG-CQG-GFIA 332 (334)
Q Consensus 297 G~~G~g~~~~~~~~~~~Div~~SlsKa~G-~~G-G~i~ 332 (334)
... .. ...+....++|.++.|.+|.+| +.| |++.
T Consensus 208 p~~-~~-~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~ 243 (380)
T PRK02769 208 PFV-NN-PPPFSFADGIDSIAISGHKFIGSPMPCGIVL 243 (380)
T ss_pred ccc-Cc-cccCCccCCCCEEEECCcccCCCCCCcEEEE
Confidence 210 00 0013333478999999999987 444 5543
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-13 Score=136.76 Aligned_cols=193 Identities=16% Similarity=0.150 Sum_probs=130.9
Q ss_pred EeecCccCCCCCCHHHHHHHHHhc--CCCCcc---ccccCchHHHHHHHHHHHhHhCCCcEEEe-ccHHHHHHHHHHHHh
Q 019931 113 LFSGNDYLGLSSHPTIAKAAARHG--MGPRGS---ALICGYTNYHRLLESCLADLKKKEDCLLC-PTGFAANMAVIVAVG 186 (334)
Q Consensus 113 ~f~sn~yLgl~~~p~v~~a~~~~g--~g~~~s---r~~~G~~~~~~~LE~~La~~~g~e~alv~-~sG~~An~~ai~al~ 186 (334)
+|.+-.|-.+..+|.+++++.+.. .+.+.+ ....|....+.++++.+++++|.+.+.++ ++|+.+....+.++.
T Consensus 71 ~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r 150 (481)
T PRK04366 71 GFYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIR 150 (481)
T ss_pred ceecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHH
Confidence 343433444556788888664421 233333 35667778889999999999998876666 567666554333211
Q ss_pred hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCC
Q 019931 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSL 261 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v 261 (334)
.. +..+++ .+++.|++....|.+....+... |.+++.++. .|+++|++++.+ ++++|++.++
T Consensus 151 ~~--~~~~Gd----~~~~~Vlv~~~~hp~~~~~~~~~----G~~vv~v~~~~~~~~D~e~L~~~i~~---~t~~V~v~~P 217 (481)
T PRK04366 151 AY--HEARGD----TKRTEVIVPDSAHGTNPASAAMA----GFKVVEIPSNEDGLVDLEALKAAVGE---DTAALMLTNP 217 (481)
T ss_pred HH--hhccCc----CCCCEEEEcCCccHhHHHHHHHc----CCEEEEeecCCCCCcCHHHHHhhccc---CCeEEEEeCC
Confidence 10 000110 01346777778999988777665 788887764 378888888864 6788888777
Q ss_pred CCCCCCc-cCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC
Q 019931 262 FSMDGDF-APMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 262 ~n~~G~~-~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
+ ++|.+ .|+++|.++|+++|+++++|.||..+.+|.... + ..++|+++++.+|.||.
T Consensus 218 n-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~------~-~~GaD~~~~~~hK~l~~ 275 (481)
T PRK04366 218 N-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARP------G-DMGFDVVHLNLHKTFST 275 (481)
T ss_pred C-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCc------c-ccCCCEEEEechhhcCC
Confidence 6 78977 589999999999999999999998665543111 1 23579999999999874
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-13 Score=121.88 Aligned_cols=196 Identities=18% Similarity=0.137 Sum_probs=146.0
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccc-cC-----c-hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALI-CG-----Y-TNYHRLLESCLADLKKKEDCLLCPTGFAANMAV 181 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~-~G-----~-~~~~~~LE~~La~~~g~e~alv~~sG~~An~~a 181 (334)
+.+||.-.-.-=|+ -.++.++|+.+||.|.+-.-+. .| . .++++-+|+ |++|+|.+.+-++++.-+|-+++
T Consensus 15 r~~iNv~PiQrGGi-Lt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~d-laeFlg~D~~R~t~GARe~Kfav 92 (382)
T COG1103 15 RGFINVNPIQRGGI-LTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLED-LAEFLGMDEVRVTAGAREAKFAV 92 (382)
T ss_pred cCccccChhhccCc-CCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHH-HHHHhCCceeeecccchhhHHHH
Confidence 44555433222233 3678888999999986432222 12 1 344444554 99999999999999999999999
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhc----CC
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSC----CT 250 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~----~~ 250 (334)
+.+++.+ ||.|+.|.+.|.+..-+...+ |.++..+++. +++...+.|++ ..
T Consensus 93 Mhal~~~--------------gd~vV~D~~aHYttyvAAEra----gl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g 154 (382)
T COG1103 93 MHALCKE--------------GDWVVVDSLAHYTTYVAAERA----GLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGG 154 (382)
T ss_pred HHHhccC--------------CCEEEEcCcchHHHHHHHHhc----CCeEEecCCCCCCceEecHHHHHHHHHHHHhccC
Confidence 9999975 899999999999987777766 7888888754 45554444443 22
Q ss_pred CCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc--
Q 019931 251 MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG-- 328 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G-- 328 (334)
..+.+.++.++-+..|+++|.++++++|+++|+.|++..|++.|.+.- .+.+.++|++++|-+|++++.|
T Consensus 155 ~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpv--------s~ke~g~DFiVgSGHKsmAAs~Pi 226 (382)
T COG1103 155 DPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPV--------SGKEIGADFIVGSGHKSMAASAPI 226 (382)
T ss_pred CCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccc--------cccccCCCEEEecCccchhccCCe
Confidence 457888888898889999999999999999999999999999875421 2334678999999999998766
Q ss_pred cEEe
Q 019931 329 GFIA 332 (334)
Q Consensus 329 G~i~ 332 (334)
|+++
T Consensus 227 Gvl~ 230 (382)
T COG1103 227 GVLA 230 (382)
T ss_pred eEEe
Confidence 5554
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-13 Score=136.08 Aligned_cols=151 Identities=17% Similarity=0.116 Sum_probs=110.3
Q ss_pred CcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CC
Q 019931 166 EDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CD 238 (334)
Q Consensus 166 e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D 238 (334)
+++++++++++|+..++.+++.+ ||.|++..+++......+... .+++++.++. .|
T Consensus 121 ~~Ivit~G~t~al~~l~~~l~~p--------------GD~Vlv~~P~Y~~f~~~~~~~---~g~~vv~v~~~~~~~f~~~ 183 (447)
T PLN02607 121 DRIVLTAGATAANELLTFILADP--------------GDALLVPTPYYPGFDRDLRWR---TGVKIVPIHCDSSNNFQVT 183 (447)
T ss_pred HHeEEcCChHHHHHHHHHHhCCC--------------CCEEEEcCCCCcchHHHHHhc---CCcEEEEEeCCCCCCCcCC
Confidence 35677788889999988888765 788888888887766555432 1677777753 26
Q ss_pred HHHHHHHHhcC---CCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCC-cccccc---cC
Q 019931 239 MSHLKTLLSCC---TMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNG-GGVAEQ---FN 308 (334)
Q Consensus 239 ~~~Le~~l~~~---~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G-~g~~~~---~~ 308 (334)
++.+|+++++. ..++++|++.+|+||+|.+.+ +++|+++|++|+++||+||+|+..+++... ..+.+. .+
T Consensus 184 ~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~ 263 (447)
T PLN02607 184 PQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARG 263 (447)
T ss_pred HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcC
Confidence 78898888642 236788888999999999888 778899999999999999999977775321 111111 11
Q ss_pred C-C-CCccEEEecCcccccCCc---cEEee
Q 019931 309 C-E-RDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 309 ~-~-~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
. . ++.-+++.||||.||..| |++++
T Consensus 264 ~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs 293 (447)
T PLN02607 264 YKGVAERVHIVYSLSKDLGLPGFRVGTIYS 293 (447)
T ss_pred CCCCcCcEEEEEcchhcCCCCcceEEEEEE
Confidence 1 1 222378899999999877 88875
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.6e-13 Score=136.35 Aligned_cols=176 Identities=15% Similarity=0.155 Sum_probs=122.2
Q ss_pred ccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhh
Q 019931 141 GSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASI 216 (334)
Q Consensus 141 ~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~ 216 (334)
++....|...+.+.+.+.+.+..| .+++++++++++|+..++.+++.. +||.|++..+.+...
T Consensus 163 ~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~-------------~gd~Vli~~P~Y~~y 229 (534)
T PLN02231 163 AYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS-------------EKDGILCPIPQYPLY 229 (534)
T ss_pred CcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccC-------------CCCEEEEeCCCChhH
Confidence 344455655555555555544434 356788888899999999988742 378888888888877
Q ss_pred HHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCC---CCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCC
Q 019931 217 IDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCT---MRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGF 283 (334)
Q Consensus 217 ~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~---~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga 283 (334)
...+... +++++.|+.+ |+++|++.+++.. .++++|++.+++||+|.+.+ +++|+++|++||+
T Consensus 230 ~~~~~~~----g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l 305 (534)
T PLN02231 230 SASIALH----GGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGL 305 (534)
T ss_pred HHHHHHc----CCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 7777766 7788877532 7899999886531 15788888899999999887 6788999999999
Q ss_pred EEEEecCcccccccCCCc--ccccc---cCCC-CC-ccEEEecCcccc-cC---CccEEee
Q 019931 284 LLVLDDAHGTFVCGKNGG--GVAEQ---FNCE-RD-VDICVGTLSKAA-GC---QGGFIAC 333 (334)
Q Consensus 284 ~LivDeAh~~Gv~G~~G~--g~~~~---~~~~-~~-~Div~~SlsKa~-G~---~GG~i~~ 333 (334)
+||+||+|...++..... .+... .+.. .+ .-|+++||||+| |. .+||+++
T Consensus 306 ~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~ 366 (534)
T PLN02231 306 VLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 366 (534)
T ss_pred EEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEE
Confidence 999999999876632111 11111 1111 11 137789999986 43 5599864
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-13 Score=131.89 Aligned_cols=159 Identities=18% Similarity=0.065 Sum_probs=112.0
Q ss_pred HHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCC-eEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 152 HRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEK-IAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 152 ~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~g-d~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
..+|++.++++++. +++++++++++++..++.+++.+ + +.|++..+.+..+....+.. |
T Consensus 61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~~--------------g~~~vlv~~p~y~~~~~~~~~~----g 122 (364)
T PRK04781 61 PPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCVP--------------GRDAVLVTPPVFGMYAVCARLQ----N 122 (364)
T ss_pred HHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcCC--------------CCCeEEEcCCChHHHHHHHHHc----C
Confidence 37899999999985 34667777788988888887764 4 67777777766554444444 7
Q ss_pred cEEEEeeCC--------CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHH--cCCEEEEecCcccccccC
Q 019931 229 VEVFVYKHC--------DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRK--YGFLLVLDDAHGTFVCGK 298 (334)
Q Consensus 229 ~~v~~~~~~--------D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k--~ga~LivDeAh~~Gv~G~ 298 (334)
.+++.++.. |++++++.+.. +++++|++.+++||+|.+.|.+++.++++. +++++|+||+|......+
T Consensus 123 ~~~~~v~~~~~~~~~~~d~~~l~~~~~~--~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~ 200 (364)
T PRK04781 123 APLVEVPLVDGADGFHADVPAIVAAALA--SNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVP 200 (364)
T ss_pred CEEEEEecCCCccCCCcCHHHHHHHHhc--cCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCc
Confidence 888887742 34555443322 368888888999999999998888887765 478999999998543211
Q ss_pred CCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 299 NGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 299 ~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
.........++ -|+++||||+||..| ||++++
T Consensus 201 ---~~~~~~~~~~~-vi~~~SfSK~~gl~GlRvGy~v~~ 235 (364)
T PRK04781 201 ---SAVGLLARYDN-LAVLRTLSKAHALAAARIGSLIAN 235 (364)
T ss_pred ---chHHHHhhCCC-EEEEecChhhcccccceeeeeeCC
Confidence 11111121233 388999999999777 898864
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.1e-13 Score=128.70 Aligned_cols=192 Identities=17% Similarity=0.081 Sum_probs=124.0
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAV 185 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al 185 (334)
++.++||+.|.. .+..++.+++++.+.-.....+.... -..+|++.++++++. ++.++++++++++..++.
T Consensus 21 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~Y~~~~----g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~-- 93 (349)
T PRK07908 21 GPGLLDFAVNVR-HDTPPEWLRERLAARLGDLAAYPSTE----DERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR-- 93 (349)
T ss_pred CCCeEEecCCCC-CCCCCHHHHHHHHHHhhHhhcCCCcc----chHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh--
Confidence 478999999863 45568888887765422212222222 246788899998874 456677777888777665
Q ss_pred hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCC-H-HHHHHHHhcCCCCcEEEEEcCCCC
Q 019931 186 GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCD-M-SHLKTLLSCCTMRKKVVVTDSLFS 263 (334)
Q Consensus 186 ~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D-~-~~Le~~l~~~~~~~~lVv~e~v~n 263 (334)
+.+ +++++. .+.+......++.. |.+++.++..+ . -+++ .++ .++++|++.+++|
T Consensus 94 l~~--------------~~viv~-~P~y~~~~~~~~~~----G~~i~~v~~~~~~~~d~~-~l~---~~~~~i~l~np~N 150 (349)
T PRK07908 94 LRP--------------RRAAVV-HPSFTEPEAALRAA----GIPVHRVVLDPPFRLDPA-AVP---DDADLVVIGNPTN 150 (349)
T ss_pred cCC--------------CeEEEe-CCCChHHHHHHHHc----CCEEEeeccCcccCcChh-Hhc---cCCCEEEEcCCCC
Confidence 332 566554 34444444444444 78888776531 1 0122 232 2578898999999
Q ss_pred CCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 264 MDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 264 ~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
|+|.+.|.++|.++|++ +.++|+||+|..-+.+. -..+. ....+..|+++||||.||+.| ||++++
T Consensus 151 PTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~-~~~l~---~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~ 219 (349)
T PRK07908 151 PTSVLHPAEQLLALRRP-GRILVVDEAFADAVPGE-PESLA---GDDLPGVLVLRSLTKTWSLAGLRVGYALGA 219 (349)
T ss_pred CCCCCcCHHHHHHHHhc-CCEEEEECcchhhccCC-ccccc---cccCCCEEEEeecccccCCccceeeeeecC
Confidence 99999999999999975 78899999998533221 11111 112222488899999999766 898764
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.1e-13 Score=132.59 Aligned_cols=166 Identities=14% Similarity=0.109 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHhHhCCC---cEEEeccHH-HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh
Q 019931 150 NYHRLLESCLADLKKKE---DCLLCPTGF-AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER 225 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~e---~alv~~sG~-~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~ 225 (334)
.+..+||+.+++++|.+ .++++++|+ +++..++.++... .-+++.|+..+..|.++..++.+.
T Consensus 105 ~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~-----------~~~gd~VI~p~~th~S~~kAi~~~-- 171 (444)
T TIGR03531 105 KLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHK-----------RPKAKYVIWPRIDQKSCIKAISTA-- 171 (444)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCc-----------CCCCCEEEEECcChHHHHHHHHHc--
Confidence 56689999999999987 789999999 7888777664321 003678888888999999999988
Q ss_pred cCCcEEEEeeC--------CCHHHHHHHHhcCCCCcEEE-EEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccc
Q 019931 226 TKMVEVFVYKH--------CDMSHLKTLLSCCTMRKKVV-VTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVC 296 (334)
Q Consensus 226 ~~g~~v~~~~~--------~D~~~Le~~l~~~~~~~~lV-v~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~ 296 (334)
|++++.++. .|+++|+++|++...+++++ +..+.+...|.+.|+++|.++|++||++||+|+||+.+..
T Consensus 172 --G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~ 249 (444)
T TIGR03531 172 --GFEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSN 249 (444)
T ss_pred --CCeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcCh
Confidence 888887772 28999999998543234444 4444344456889999999999999999999999986421
Q ss_pred cCCCcccccccCCC-CCccEEEecCcccccCC--ccEEee
Q 019931 297 GKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQ--GGFIAC 333 (334)
Q Consensus 297 G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~--GG~i~~ 333 (334)
. -.... ..+.. ..+|+++.|++|.+.+. ||+|++
T Consensus 250 -~-~~~~~-~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~ 286 (444)
T TIGR03531 250 -K-YMELI-NKAIKVGRVDAVVSSTDKNFMVPVGGAIIYS 286 (444)
T ss_pred -h-hhhhh-hccccccCCCeEEEeCccCCCCCCCEEEEEE
Confidence 0 00000 01122 24689999999999863 455544
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-13 Score=129.23 Aligned_cols=180 Identities=17% Similarity=0.120 Sum_probs=116.9
Q ss_pred eeEEEeecC-ccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC---CcEEEeccHHHHHHHHHHH
Q 019931 109 KRLLLFSGN-DYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK---EDCLLCPTGFAANMAVIVA 184 (334)
Q Consensus 109 ~~~l~f~sn-~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~---e~alv~~sG~~An~~ai~a 184 (334)
.++++|++| +.+|.+..+....++.+|- .+. .+|.++|++++|. +++++++++.+++..+. .
T Consensus 24 ~~~i~ls~Nenp~~~~~~~~~~~~~~~Yp------------~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~-~ 89 (339)
T PRK06959 24 DAWLDLSTGINPHGYPVPPVPADAWRRLP------------EDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALP-A 89 (339)
T ss_pred hhhceeccCCCCCCCCCCCCCHHHHHhCC------------Cch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHH-H
Confidence 467899998 4566653332222333321 123 7899999999986 34566666677766443 3
Q ss_pred HhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCC
Q 019931 185 VGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSM 264 (334)
Q Consensus 185 l~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~ 264 (334)
++.+ ++ |++..+.+..+...++.. |++++.++.++ +. +.+ .++++++.+|+||
T Consensus 90 ~~~~--------------g~-v~v~~P~y~~y~~~~~~~----g~~~~~v~~~~-~~----~~~---~~~~v~l~nPnNP 142 (339)
T PRK06959 90 LLPR--------------GR-VGIAPLAYSEYAPAFARH----GHRVVPLDEAA-DT----LPA---ALTHLIVVNPNNP 142 (339)
T ss_pred hcCC--------------Ce-EEEcCCCcHHHHHHHHHC----CCEEEeecccc-hh----ccc---cCCEEEEeCCCCC
Confidence 4432 66 445666777777777766 88888876543 22 211 3567888889999
Q ss_pred CCCccCHHHHHHH---HHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 265 DGDFAPMVELVKL---RRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 265 ~G~~~pL~~L~el---a~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
+|.+.+.+++.++ |++++.++|+||+|...... ..+..... .++ -|+++||||+||..| ||++++
T Consensus 143 TG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~---~s~~~~~~-~~~-vi~l~SfSK~~gl~GlRiGy~v~~ 213 (339)
T PRK06959 143 TAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA---ASLAAHTD-RPG-LVVLRSVGKFFGLAGVRAGFVLAA 213 (339)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc---ccchhccC-CCC-EEEEecChhhcCCcchheEEEecC
Confidence 9999886665554 56789999999999864221 11111111 133 389999999999888 998874
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.9e-13 Score=131.73 Aligned_cols=204 Identities=16% Similarity=0.151 Sum_probs=138.2
Q ss_pred eeEEEeecCccC-CCCCCHHHHHHHHH----hcCC-CCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHHH
Q 019931 109 KRLLLFSGNDYL-GLSSHPTIAKAAAR----HGMG-PRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAAN 178 (334)
Q Consensus 109 ~~~l~f~sn~yL-gl~~~p~v~~a~~~----~g~g-~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~An 178 (334)
...++|+.+... .+-....+++++.+ +... ...+....|..++.+.+.+.+....| .++++++++...|+
T Consensus 89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al 168 (459)
T COG1167 89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQAL 168 (459)
T ss_pred CceecCCCCCCCcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHH
Confidence 567788776411 22223344443322 2222 12223335555666666666654444 24677778888899
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC----CHHHHHHHHhcCCCCcE
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC----DMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~----D~~~Le~~l~~~~~~~~ 254 (334)
..+++.++.+ ||.|+++.+.|......++.. |.+++.++.+ |+++||++++.. +.|
T Consensus 169 ~l~~~~l~~p--------------Gd~v~vE~PtY~~~~~~~~~~----g~~~~~vp~d~~G~~~e~le~~~~~~--~~k 228 (459)
T COG1167 169 DLLLRLLLDP--------------GDTVLVEDPTYPGALQALEAL----GARVIPVPVDEDGIDPEALEEALAQW--KPK 228 (459)
T ss_pred HHHHHHhCCC--------------CCEEEEcCCCcHHHHHHHHHc----CCcEEecCCCCCCCCHHHHHHHHhhc--CCc
Confidence 9888888765 899999999988888777766 8888888754 899999999864 455
Q ss_pred E-EEEcCCCCCCCCccCHH---HHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccC--C
Q 019931 255 V-VVTDSLFSMDGDFAPMV---ELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGC--Q 327 (334)
Q Consensus 255 l-Vv~e~v~n~~G~~~pL~---~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~--~ 327 (334)
+ +++-+-+||+|.+.+++ +|.++|++|++++|.||.++...+.. ........+. ++.-|.++||||++.+ .
T Consensus 229 ~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~--~p~~~l~~ld~~~rViy~gSFSK~l~PglR 306 (459)
T COG1167 229 AVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDG--PPPPPLKALDAPGRVIYLGSFSKTLAPGLR 306 (459)
T ss_pred EEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCC--CCCCChHhhCCCCCEEEEeeehhhcccccc
Confidence 4 55666778999998864 69999999999999999998755532 2211111111 3445999999999964 5
Q ss_pred ccEEeeC
Q 019931 328 GGFIACR 334 (334)
Q Consensus 328 GG~i~~~ 334 (334)
-|||+++
T Consensus 307 lG~vv~p 313 (459)
T COG1167 307 LGYVVAP 313 (459)
T ss_pred eeeeeCC
Confidence 6998875
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-13 Score=131.87 Aligned_cols=158 Identities=20% Similarity=0.088 Sum_probs=113.6
Q ss_pred HHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCc
Q 019931 152 HRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMV 229 (334)
Q Consensus 152 ~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~ 229 (334)
..+|.+.+++++|. +++++++++++++..++.+++.+ ++|.|+...+.|..+...++.. |+
T Consensus 59 ~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~~-------------g~~~vli~~P~y~~y~~~~~~~----G~ 121 (351)
T PRK01688 59 PKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCEP-------------GKDAILYCPPTYGMYSVSAETI----GV 121 (351)
T ss_pred hHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCC-------------CCCEEEEcCCCHHHHHHHHHHc----CC
Confidence 36899999999985 45777788889999998887654 1377887777877666666655 78
Q ss_pred EEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHc--CCEEEEecCcccccccCCCcc
Q 019931 230 EVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKY--GFLLVLDDAHGTFVCGKNGGG 302 (334)
Q Consensus 230 ~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~--ga~LivDeAh~~Gv~G~~G~g 302 (334)
+++.++.+ |++++++.+. ++++|++.+++||+|.+.+.++|.++++.. +.++|+||+|....... .
T Consensus 122 ~~~~v~~~~~~~~d~~~l~~~~~----~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~---s 194 (351)
T PRK01688 122 EIRTVPTLDNWQLDLPAIADNLD----GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQA---S 194 (351)
T ss_pred EEEEeecCCCCCCCHHHHHHhcc----CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCC---C
Confidence 88877642 6777777652 678999999999999999977777766542 68999999997532111 1
Q ss_pred cccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 303 VAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 303 ~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
........++ -|++.||||+||..| ||++++
T Consensus 195 ~~~~~~~~~n-~iv~rSfSK~~glaGlRiGy~i~~ 228 (351)
T PRK01688 195 LAGWLAEYPH-LVILRTLSKAFALAGLRCGFTLAN 228 (351)
T ss_pred hHHHHhhCCC-EEEEecchHhhcCHHHHHhHHhCC
Confidence 1111111233 389999999999877 887653
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-13 Score=130.40 Aligned_cols=157 Identities=18% Similarity=0.092 Sum_probs=112.9
Q ss_pred HHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCc
Q 019931 152 HRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMV 229 (334)
Q Consensus 152 ~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~ 229 (334)
..+|++++|+++|. +.+++++++++++..++.+++.+ ++|.|++..+.+......++.. |+
T Consensus 62 ~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~~-------------g~d~vlv~~P~y~~y~~~~~~~----g~ 124 (354)
T PRK04635 62 PPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCEP-------------GQDSIACFGPTYGMYAISAETF----NV 124 (354)
T ss_pred HHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcCC-------------CCCeEEEcCCChHHHHHHHHHc----CC
Confidence 37799999999985 45777788889999999888764 1377888777776655444444 78
Q ss_pred EEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHc-CCEEEEecCcccccccCCCccc
Q 019931 230 EVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKY-GFLLVLDDAHGTFVCGKNGGGV 303 (334)
Q Consensus 230 ~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~-ga~LivDeAh~~Gv~G~~G~g~ 303 (334)
+++.++.+ |++.+++ + +++++|++++++||+|.+.|.+++.++++.. +++||+||+|.... .. ...
T Consensus 125 ~v~~v~~~~~~~~~~~~l~~-~----~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~--~~-~s~ 196 (354)
T PRK04635 125 GVKALPLTADYQLPLDYIEQ-L----DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFC--PE-YSV 196 (354)
T ss_pred EEEEEecCCCCCCCHHHHHh-c----cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhc--cC-cch
Confidence 88887753 4555552 2 2688999999999999999999999998874 79999999997532 11 111
Q ss_pred ccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 304 AEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 304 ~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
.......+++ |++.||||+||..| ||++++
T Consensus 197 ~~~~~~~~~~-iv~~S~SK~~~l~GlRlG~~i~~ 229 (354)
T PRK04635 197 ADLLASYPNL-VVLRTLSKAFALAGARCGFTLAN 229 (354)
T ss_pred HHHHhhCCCE-EEEechHHHhhhhHHHHhhhhCC
Confidence 1111112333 78999999999877 887653
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-12 Score=121.71 Aligned_cols=200 Identities=20% Similarity=0.205 Sum_probs=140.3
Q ss_pred eeEEEeecCc---cCCCCCCHHHHHHHHH---hcCCCCccccccCchHHHHHHHHHHHhHh----CCCcEEEeccHHHHH
Q 019931 109 KRLLLFSGND---YLGLSSHPTIAKAAAR---HGMGPRGSALICGYTNYHRLLESCLADLK----KKEDCLLCPTGFAAN 178 (334)
Q Consensus 109 ~~~l~f~sn~---yLgl~~~p~v~~a~~~---~g~g~~~sr~~~G~~~~~~~LE~~La~~~----g~e~alv~~sG~~An 178 (334)
|.+|-....| |-.|.+.+...+|+.+ .|.+. +|....|.....+++.+.+-+-. ..+++++++++.+|+
T Consensus 61 k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N-~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAI 139 (447)
T KOG0259|consen 61 KPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGN-GYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAI 139 (447)
T ss_pred ceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCC-CcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHH
Confidence 5777777754 5667778887777643 23332 33444454444444444432211 246788889999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCC
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTM 251 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~ 251 (334)
..++.+|++| +.-|+..++.+.-...-+... +.+++.|+.. |++.+|.++.+
T Consensus 140 e~~i~~LA~p--------------~aNILlPrPGfp~Y~~~a~~~----~lEVR~ydlLPe~~weIDL~~veal~DE--- 198 (447)
T KOG0259|consen 140 ELAISSLANP--------------GANILLPRPGFPLYDTRAIYS----GLEVRYYDLLPEKDWEIDLDGVEALADE--- 198 (447)
T ss_pred HHHHHHhcCC--------------CCceecCCCCCchHHHhhhhc----CceeEeecccCcccceechHHHHHhhcc---
Confidence 9999999986 555888877654433333333 7888888742 89999999986
Q ss_pred CcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC-CCCCccEEEecCcccccCC
Q 019931 252 RKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN-CERDVDICVGTLSKAAGCQ 327 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~-~~~~~Div~~SlsKa~G~~ 327 (334)
+|.++++..++||.|.+.. |++|+++|+|+|+++|.||+|..-+||..-.-....|. ..| -|.+|++||.+=..
T Consensus 199 NT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVP--VitlggisKrW~VP 276 (447)
T KOG0259|consen 199 NTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVP--VITLGGISKRWIVP 276 (447)
T ss_pred CeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCc--eEeecccccccccC
Confidence 8999999999999998876 99999999999999999999999888743211111222 123 26789999998665
Q ss_pred c---cEEe
Q 019931 328 G---GFIA 332 (334)
Q Consensus 328 G---G~i~ 332 (334)
| |+++
T Consensus 277 GWRlGWi~ 284 (447)
T KOG0259|consen 277 GWRLGWIA 284 (447)
T ss_pred CceeeeEE
Confidence 5 7765
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=130.70 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=109.6
Q ss_pred ccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHH
Q 019931 145 ICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRI 222 (334)
Q Consensus 145 ~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~l 222 (334)
..|......++++.+++++|.+ .++++++|++++.+++.++... ++|.|++....|.+....+..
T Consensus 107 ~~g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~-------------~g~~Vlv~~~~~~~~~~~~~~ 173 (447)
T PRK00451 107 SQGTLQAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVRIT-------------KRKKVLVSGAVHPEYREVLKT 173 (447)
T ss_pred chHHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhc-------------CCCEEEEeCccCHHHHHHHHH
Confidence 3444455667778899999975 3567788888887877776421 267788888899887777654
Q ss_pred hhhcCCcEEEEeeCC----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEe-cCccccccc
Q 019931 223 AERTKMVEVFVYKHC----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLD-DAHGTFVCG 297 (334)
Q Consensus 223 s~~~~g~~v~~~~~~----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivD-eAh~~Gv~G 297 (334)
.....|.+++.++.+ |+++|++++++ ++++|++.++ |++|.+.|+++|.++|+++|++++++ +..+.|.+.
T Consensus 174 ~~~~~G~~~~~v~~~~~~~d~~~l~~~i~~---~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~~~g~~~ 249 (447)
T PRK00451 174 YLKGQGIEVVEVPYEDGVTDLEALEAAVDD---DTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPVSLGLLK 249 (447)
T ss_pred HHHhCCcEEEEecCCCCCCCHHHHHHhcCC---CeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChHHhccCC
Confidence 222237888888764 78888888864 7888888888 78999999999999999999999982 223333221
Q ss_pred CCCcccccccCCCCCccEEEe---cCccccc
Q 019931 298 KNGGGVAEQFNCERDVDICVG---TLSKAAG 325 (334)
Q Consensus 298 ~~G~g~~~~~~~~~~~Div~~---SlsKa~G 325 (334)
.. -..++|++++ +|||.+.
T Consensus 250 --------~~-~~~~~D~~~~s~~k~~~~~~ 271 (447)
T PRK00451 250 --------PP-GEYGADIVVGEGQPLGIPLS 271 (447)
T ss_pred --------Cc-ccCCCCEEEECCCcCCCCCC
Confidence 11 1245789888 5666643
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-12 Score=125.63 Aligned_cols=192 Identities=13% Similarity=0.023 Sum_probs=122.2
Q ss_pred CCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC-C-----CcEEEeccHHHHHHHHHHHHhhhhhhccCCC
Q 019931 124 SHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK-K-----EDCLLCPTGFAANMAVIVAVGNIASLLAGDE 196 (334)
Q Consensus 124 ~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g-~-----e~alv~~sG~~An~~ai~al~~~~~~~~~~~ 196 (334)
..+.+++++++.. ....++....|...+.+.+.+.+.+..+ . +++++++++.+++..++.+++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~-------- 92 (388)
T PRK08637 21 YLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQ-------- 92 (388)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCC--------
Confidence 3455555555532 2223344456655555555555544322 1 34577788888998888888764
Q ss_pred ccCCCCCeEEEEcCCCchhhHHHHH-HhhhcCCcEEEEeeC--C----CHHHHHHHHhc-CCCCcEEEEEcCCCCCCCCc
Q 019931 197 KSFKDEKIAIFSDALNHASIIDGIR-IAERTKMVEVFVYKH--C----DMSHLKTLLSC-CTMRKKVVVTDSLFSMDGDF 268 (334)
Q Consensus 197 ~~~~~~gd~Vl~d~~~H~s~~~g~~-ls~~~~g~~v~~~~~--~----D~~~Le~~l~~-~~~~~~lVv~e~v~n~~G~~ 268 (334)
||.|++..+.+......+. .. |.+++.++. . |++++++.++. ..+.++++++.+++||+|.+
T Consensus 93 ------gd~Vlv~~P~y~~~~~~~~~~~----g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~ 162 (388)
T PRK08637 93 ------GDTVLLPDHNWGNYKLTFNTRR----GAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYT 162 (388)
T ss_pred ------CCEEEEcCCCCccHHHHHHHhc----CCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCC
Confidence 7888888888777665433 34 778877764 2 68888888762 11356788899999999988
Q ss_pred cC---HHHHHHHHHH-----cCCEEEEecCcccccccCCCc-ccccc-cCCCCCc-cEEEecCcccccCCc---cEEee
Q 019931 269 AP---MVELVKLRRK-----YGFLLVLDDAHGTFVCGKNGG-GVAEQ-FNCERDV-DICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 269 ~p---L~~L~ela~k-----~ga~LivDeAh~~Gv~G~~G~-g~~~~-~~~~~~~-Div~~SlsKa~G~~G---G~i~~ 333 (334)
.+ +++|+++|++ |+++||+||+|...++..... .+... .+..+++ -|.++||||.|++.| ||++.
T Consensus 163 ~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~ 241 (388)
T PRK08637 163 PTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITF 241 (388)
T ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEE
Confidence 77 5667777765 999999999998655532111 11111 1222233 134469999998877 88763
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-12 Score=125.87 Aligned_cols=192 Identities=16% Similarity=0.033 Sum_probs=131.8
Q ss_pred CCHHHHHHHHHhcC---CCCccccccCchHHHHHHHHHHHhHhCCC----cEEE--eccHHHHHHHHHHHHhhhh--hhc
Q 019931 124 SHPTIAKAAARHGM---GPRGSALICGYTNYHRLLESCLADLKKKE----DCLL--CPTGFAANMAVIVAVGNIA--SLL 192 (334)
Q Consensus 124 ~~p~v~~a~~~~g~---g~~~sr~~~G~~~~~~~LE~~La~~~g~e----~alv--~~sG~~An~~ai~al~~~~--~~~ 192 (334)
.+|.+.+++.++-. +...+ ........+++.+.+++++|.+ .+.+ +++|++||..++.+..... ...
T Consensus 53 ~~p~~~~~~~~~l~~~~~np~s--~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~ 130 (431)
T TIGR01788 53 MEPEARKLMDETINKNMIDKDE--YPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRME 130 (431)
T ss_pred CCHHHHHHHHHHHhcCCCCccc--CccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHH
Confidence 36778776654321 22111 1222356677778888899865 3433 5899999999987654220 000
Q ss_pred cCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC---C---CHHHHHHHHhcCCCCcEEEEEcCCCCCCC
Q 019931 193 AGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH---C---DMSHLKTLLSCCTMRKKVVVTDSLFSMDG 266 (334)
Q Consensus 193 ~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~---~---D~~~Le~~l~~~~~~~~lVv~e~v~n~~G 266 (334)
..+ .. .....|++....|.|+...++.. +.+++.++. . |+++|+++|++ ++.+|++..+++.+|
T Consensus 131 ~~g-~~--~~~~~ii~s~~~H~sv~ka~~~l----g~~v~~i~~d~~~~~vd~~~L~~~i~~---~t~lV~~t~g~t~tG 200 (431)
T TIGR01788 131 AAG-KP--TDKPNLVMGSNVQVCWEKFARYF----DVELREVPMDPGRYVIDPEQVVEAVDE---NTIGVVCILGTTYTG 200 (431)
T ss_pred hcC-CC--CCCcEEEEcCcchHHHHHHHHHc----CceeEEEecCCCceeeCHHHHHHHHhh---CCeEEEEEeCCCCCc
Confidence 000 00 01246888899999998888766 666665553 1 78899999875 688999999999999
Q ss_pred CccCHHHHHHHHHHc------CCEEEEecCccccc----ccCCCcccccccCCCCCccEEEecCcccc-cCCc-cEEe
Q 019931 267 DFAPMVELVKLRRKY------GFLLVLDDAHGTFV----CGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQG-GFIA 332 (334)
Q Consensus 267 ~~~pL~~L~ela~k~------ga~LivDeAh~~Gv----~G~~G~g~~~~~~~~~~~Div~~SlsKa~-G~~G-G~i~ 332 (334)
.+.|+++|.++|+++ |+++++|.||+.+. +++.. ..+. .+++|.+..|.+|-+ |+.| |++.
T Consensus 201 ~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~----~~~~-~~~~DSis~s~HK~~~~P~g~G~l~ 273 (431)
T TIGR01788 201 EYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLE----WDFR-LPRVKSINVSGHKYGLVYPGVGWVI 273 (431)
T ss_pred ccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCch----hhcC-CCCceEEEECchhccCCCCCcEEEE
Confidence 999999999999999 99999999999654 22211 1222 357899999999966 8876 6654
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-12 Score=127.57 Aligned_cols=166 Identities=14% Similarity=0.070 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHH-HHHhhhcC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDG-IRIAERTK 227 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g-~~ls~~~~ 227 (334)
++...+||+++++++|.++++.++||++|+..++...++ +||+| ....|.....+ +...
T Consensus 77 d~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v~--------------pGd~V--p~n~~f~Tt~ahI~~~---- 136 (460)
T PRK13237 77 SRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAIK--------------PGQYV--PGNMYFTTTRYHQELN---- 136 (460)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCC--------------CcCEE--CCccchHhhHHHHHhC----
Confidence 455689999999999999999999999999986543333 37765 44455555444 4333
Q ss_pred CcEEEEe--------------eC-CCHHHHHHHHhcCC-CCcEEEEEcCCCCCC-CCcc---CHHHHHHHHHHcCCEEEE
Q 019931 228 MVEVFVY--------------KH-CDMSHLKTLLSCCT-MRKKVVVTDSLFSMD-GDFA---PMVELVKLRRKYGFLLVL 287 (334)
Q Consensus 228 g~~v~~~--------------~~-~D~~~Le~~l~~~~-~~~~lVv~e~v~n~~-G~~~---pL~~L~ela~k~ga~Liv 287 (334)
|+.++-. .. .|++.|+++|++.. +++.+|..+-+.|.. |.+. ++++|.++|++||+.||.
T Consensus 137 Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~ 216 (460)
T PRK13237 137 GGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFF 216 (460)
T ss_pred CcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEE
Confidence 5543322 11 28999999998632 234444444444554 6554 589999999999999999
Q ss_pred ecCcccc---cc-----cCCCcccccc-cCCCCCccEEEecCcccccC-CccEEeeC
Q 019931 288 DDAHGTF---VC-----GKNGGGVAEQ-FNCERDVDICVGTLSKAAGC-QGGFIACR 334 (334)
Q Consensus 288 DeAh~~G---v~-----G~~G~g~~~~-~~~~~~~Div~~SlsKa~G~-~GG~i~~~ 334 (334)
|.||.+| ++ |..+....+. ..+....|+++.|++|.++. .||+|+.+
T Consensus 217 DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~GG~i~t~ 273 (460)
T PRK13237 217 DATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIGGFLAMN 273 (460)
T ss_pred ECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCceEEEEC
Confidence 9999987 22 1112211100 00113468999999999976 59999863
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-12 Score=125.66 Aligned_cols=166 Identities=14% Similarity=0.046 Sum_probs=113.4
Q ss_pred chHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHH-HHHhhhc
Q 019931 148 YTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDG-IRIAERT 226 (334)
Q Consensus 148 ~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g-~~ls~~~ 226 (334)
.++...+||+++++++|.++++.++||++|...+..+.++ +||+| ..+.|.....+ +...
T Consensus 69 g~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~l~--------------pGDeV--psn~~f~Tt~ahIe~~--- 129 (450)
T TIGR02618 69 GSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIAIK--------------PGDYV--PGNMYFTTTRYHQEKN--- 129 (450)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhCCC--------------CcCEE--CCceeHHHHHHHHHhC---
Confidence 3455689999999999999999999999996655444443 37877 34566555444 4444
Q ss_pred CCcEEEEeeC---------------CCHHHHHHHHhcCC-CCcEEEEEcCCCCCC-CCc---cCHHHHHHHHHHcCCEEE
Q 019931 227 KMVEVFVYKH---------------CDMSHLKTLLSCCT-MRKKVVVTDSLFSMD-GDF---APMVELVKLRRKYGFLLV 286 (334)
Q Consensus 227 ~g~~v~~~~~---------------~D~~~Le~~l~~~~-~~~~lVv~e~v~n~~-G~~---~pL~~L~ela~k~ga~Li 286 (334)
|+.++-+.. .|+++||++|++.. .++++|.++.+.|.. |.+ .++++|.++|++||+.|+
T Consensus 130 -Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi 208 (450)
T TIGR02618 130 -GATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVF 208 (450)
T ss_pred -CeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEE
Confidence 554444411 28999999998532 244566666566654 777 447999999999999999
Q ss_pred EecCccccc--c------cCCCcccccc-cCCCCCccEEEecCcccccC-CccEEee
Q 019931 287 LDDAHGTFV--C------GKNGGGVAEQ-FNCERDVDICVGTLSKAAGC-QGGFIAC 333 (334)
Q Consensus 287 vDeAh~~Gv--~------G~~G~g~~~~-~~~~~~~Div~~SlsKa~G~-~GG~i~~ 333 (334)
.|.||.++- + |..+....+. -.+...+|.++.|+.|.++. .||+|+.
T Consensus 209 ~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~GG~l~~ 265 (450)
T TIGR02618 209 YDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIGGFLCM 265 (450)
T ss_pred EEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCceEEEe
Confidence 999999841 1 1112222110 00123578999999999976 6999983
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-12 Score=132.55 Aligned_cols=155 Identities=14% Similarity=0.073 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHH-HHHhhhc
Q 019931 149 TNYHRLLESCLADLKKKEDCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDG-IRIAERT 226 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g-~~ls~~~ 226 (334)
.-...+.|+.+|+.+|+++..+. ++.+.+|.+++.+++.+ ||.|++++.+|.|+.++ +.++
T Consensus 173 eG~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~~--------------Gd~VLvdRN~HKSv~hgaLiLs--- 235 (720)
T PRK13578 173 EGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTP--------------GDLVLFDRNNHKSNHHGALIQA--- 235 (720)
T ss_pred ChHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcCC--------------CCEEEeecccHHHHHHHHHHHc---
Confidence 34568999999999999998766 55567999999998875 89999999999999997 8888
Q ss_pred CCcEEEEeeCC----------C-----HHHHHHHHhcCCC-------CcE-EEEEcCCCCCCCCccCHHHHHHH-HHHcC
Q 019931 227 KMVEVFVYKHC----------D-----MSHLKTLLSCCTM-------RKK-VVVTDSLFSMDGDFAPMVELVKL-RRKYG 282 (334)
Q Consensus 227 ~g~~v~~~~~~----------D-----~~~Le~~l~~~~~-------~~~-lVv~e~v~n~~G~~~pL~~L~el-a~k~g 282 (334)
|+.++++... + .+.++++|++.++ +.+ +|++.+.| +|.+.++++|+++ +++++
T Consensus 236 -Ga~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY--dG~~ydi~~I~~~~~h~~~ 312 (720)
T PRK13578 236 -GATPVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY--DGTIYNARQVVDKIGHLCD 312 (720)
T ss_pred -CCeEEEeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC--cceeecHHHHHHHhhccCC
Confidence 8887775321 3 4558988887521 134 45555555 8999999999998 78888
Q ss_pred CEEEEecCcccccccCCC--cccccccCCCCCcc----EEEecCcccccC
Q 019931 283 FLLVLDDAHGTFVCGKNG--GGVAEQFNCERDVD----ICVGTLSKAAGC 326 (334)
Q Consensus 283 a~LivDeAh~~Gv~G~~G--~g~~~~~~~~~~~D----iv~~SlsKa~G~ 326 (334)
.|++||||+.- +.-.. +++.. ..+..++| +++-|.+|.+++
T Consensus 313 -~llvDEAhgah-~~F~p~~~~~p~-~al~~GaD~p~i~v~QStHKtL~a 359 (720)
T PRK13578 313 -YILFDSAWVGY-EQFIPMMADCSP-LLLELNENDPGIFVTQSVHKQQAG 359 (720)
T ss_pred -cEEEeCcchhh-hccCcccccCCh-hhhhcCCCCCCeEEEEChhhcchh
Confidence 99999999853 22111 11111 11334566 999999999976
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-12 Score=131.25 Aligned_cols=153 Identities=13% Similarity=0.092 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhHhCCCcEEEeccH-HHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 150 NYHRLLESCLADLKKKEDCLLCPTG-FAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~e~alv~~sG-~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
-...+.|+.+|+.+|++++.+..+| +.+|.+++.+++.+ ||.|++|+.+|.|+.+++.++ |
T Consensus 195 G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~~--------------Gd~VLvdRN~HKSv~haLils----g 256 (714)
T PRK15400 195 GPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPA--------------GSTVLIDRNCHKSLTHLMMMS----D 256 (714)
T ss_pred hHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcCC--------------CCEEEeecccHHHHHHHHHHc----C
Confidence 4568999999999999998777555 77999999988865 899999999999999999998 8
Q ss_pred cEEEEeeCC---------------CHHHHHHHHhcCCCCc---EEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecC
Q 019931 229 VEVFVYKHC---------------DMSHLKTLLSCCTMRK---KVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDA 290 (334)
Q Consensus 229 ~~v~~~~~~---------------D~~~Le~~l~~~~~~~---~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeA 290 (334)
+.++++... +.+.+++.+++.+..+ .+|++.+.| +|.+.++++|+++|+.++ |++|||
T Consensus 257 a~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY--dG~~yd~~~I~~~~~~~~--ilvDEA 332 (714)
T PRK15400 257 VTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY--DGLLYNTDFIKKTLDVKS--IHFDSA 332 (714)
T ss_pred CeEEEecccccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCC--ccEecCHHHHHHHhCCCC--EEEEcc
Confidence 888776421 3789999998764212 466776655 899999999999999887 689999
Q ss_pred cccccccCCCcccccccCCCCCc---c--EEEecCcccccC
Q 019931 291 HGTFVCGKNGGGVAEQFNCERDV---D--ICVGTLSKAAGC 326 (334)
Q Consensus 291 h~~Gv~G~~G~g~~~~~~~~~~~---D--iv~~SlsKa~G~ 326 (334)
|+.- +.-.. .+....++..++ | +++-|.+|.+++
T Consensus 333 wgah-~~F~p-~~~~~sam~~ga~~~~~i~vtQStHKtL~a 371 (714)
T PRK15400 333 WVPY-TNFSP-IYEGKCGMSGGRVEGKVIYETQSTHKLLAA 371 (714)
T ss_pred chhh-hccCc-ccCCcChhhcCCCCCCceEEEEchhhcccc
Confidence 9853 21111 111122222222 4 999999999976
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-11 Score=120.69 Aligned_cols=208 Identities=14% Similarity=0.086 Sum_probs=117.2
Q ss_pred eeEEEeecCccCCCCCC-HHHHHHHHHhcC-CC-----CccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHH
Q 019931 109 KRLLLFSGNDYLGLSSH-PTIAKAAARHGM-GP-----RGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAA 177 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~-p~v~~a~~~~g~-g~-----~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~A 177 (334)
...+||+.++..-+..+ +.+++++++... .. ..+....|...+.+.+.+.+.+..| .+++++++++.+|
T Consensus 30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~a 109 (416)
T PRK09440 30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSA 109 (416)
T ss_pred CCceeccCCCCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHH
Confidence 34689987764322222 244555554321 11 1233334544444455554444434 2467777888889
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEE-cCCCchhhHHHHHHhh--hcCCcEEEEeeC------CCHHHHHHHHhc
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFS-DALNHASIIDGIRIAE--RTKMVEVFVYKH------CDMSHLKTLLSC 248 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~-d~~~H~s~~~g~~ls~--~~~g~~v~~~~~------~D~~~Le~~l~~ 248 (334)
+..++.+++.++ ..++||.|++ ..+.+......+.... ...+..+..++. .|++.|+ +.
T Consensus 110 l~~~~~~l~~~~---------~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~- 177 (416)
T PRK09440 110 FFYLFNLFAGRR---------ADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--ID- 177 (416)
T ss_pred HHHHHHHHhccc---------cCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cC-
Confidence 988888877531 0013666776 5666555443222110 000122222221 2566665 22
Q ss_pred CCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc
Q 019931 249 CTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 249 ~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G 325 (334)
.++++|++.+++||+|.+.+ +++|+++|++|++++|+||+|....-......... ...++ -|+++||||. +
T Consensus 178 --~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~--~~~~~-vI~~~SfSK~-~ 251 (416)
T PRK09440 178 --EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATP--LWNPN-IILCMSLSKL-G 251 (416)
T ss_pred --CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCc--cccCC-eEEEeccccc-C
Confidence 36789999999999999988 66788899999999999999974211100000000 01122 4889999996 6
Q ss_pred CCc---cEEeeC
Q 019931 326 CQG---GFIACR 334 (334)
Q Consensus 326 ~~G---G~i~~~ 334 (334)
+.| ||++++
T Consensus 252 ~pGlRiG~~i~~ 263 (416)
T PRK09440 252 LPGVRCGIVIAD 263 (416)
T ss_pred CCcceEEEEeCC
Confidence 666 888764
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-11 Score=129.49 Aligned_cols=164 Identities=17% Similarity=0.171 Sum_probs=122.3
Q ss_pred ccCchHHHHHHHHHHHhHhCCCcEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHh
Q 019931 145 ICGYTNYHRLLESCLADLKKKEDCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIA 223 (334)
Q Consensus 145 ~~G~~~~~~~LE~~La~~~g~e~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls 223 (334)
..|+.....++++.|++++|.+.+-++ ++|++++.+.+.++...-. ..++ .+.++|++....|++....+...
T Consensus 525 sqG~lq~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~--~rge----~~R~~vlip~saHgtnPasa~~~ 598 (939)
T TIGR00461 525 VEGYQELIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHE--SRGE----NHRNICLIPVSAHGTNPASAAMA 598 (939)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHH--hcCC----CCCCEEEEEccccCcCHHHHHHC
Confidence 456778889999999999999876555 7778888876766543100 0000 12467888888998877776666
Q ss_pred hhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC-HHHHHHHHHHcCCEEEEecCccccccc
Q 019931 224 ERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP-MVELVKLRRKYGFLLVLDDAHGTFVCG 297 (334)
Q Consensus 224 ~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p-L~~L~ela~k~ga~LivDeAh~~Gv~G 297 (334)
|.+++.++.+ |+++|++++++.+.++++|++..+++ .|.+.| +++|.++|+++|+++++|.|+..+..+
T Consensus 599 ----G~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~ 673 (939)
T TIGR00461 599 ----GMQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVG 673 (939)
T ss_pred ----CCEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCC
Confidence 7888888753 89999999986445788998888888 688877 999999999999999999999754332
Q ss_pred CCCcccccccCCCCCccEEEecCcccccC
Q 019931 298 KNGGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 298 ~~G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
.. .. -.-++||+++|.+|+|+.
T Consensus 674 l~------~P-g~~GaDi~~~s~HKtf~~ 695 (939)
T TIGR00461 674 LT------SP-GDLGADVCHLNLHKTFCI 695 (939)
T ss_pred CC------Cc-cccCCCEEEecCCccCCC
Confidence 11 11 124689999999998863
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-11 Score=128.84 Aligned_cols=165 Identities=15% Similarity=0.123 Sum_probs=123.4
Q ss_pred ccCchHHHHHHHHHHHhHhCCCcEEEec-cHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHh
Q 019931 145 ICGYTNYHRLLESCLADLKKKEDCLLCP-TGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIA 223 (334)
Q Consensus 145 ~~G~~~~~~~LE~~La~~~g~e~alv~~-sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls 223 (334)
..|+.....+||+.+++++|.+.+-+.+ +|+++++++++++..- .-.+|+ ...++|++....|.+....+...
T Consensus 538 sQG~lq~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~y--h~~~Ge----~~r~~vLIp~saHgtNpasa~~~ 611 (954)
T PRK12566 538 AEGYRAMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRY--HRSRGQ----SQRDICLIPSSAHGTNPASAQMA 611 (954)
T ss_pred hcCHHHHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHH--HHhcCC----CCCCEEEecccccccCHHHHHHC
Confidence 5677788899999999999999987774 9999998888876531 000110 12467888888887765444444
Q ss_pred hhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccC
Q 019931 224 ERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGK 298 (334)
Q Consensus 224 ~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~ 298 (334)
|.+++.++.+ |+++|++++++.+.++++|++..+++..+...|+++|+++|+++|+++++|.||..+..+-
T Consensus 612 ----GieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l 687 (954)
T PRK12566 612 ----GMRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGL 687 (954)
T ss_pred ----CCEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCC
Confidence 7888888763 8999999998555577888888877766556679999999999999999999998653321
Q ss_pred CCcccccccCCCCCccEEEecCcccccC
Q 019931 299 NGGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 299 ~G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
... -.-++||++++++|+|+.
T Consensus 688 ------~~P-g~~GADi~~~s~HKtf~~ 708 (954)
T PRK12566 688 ------ARP-ADIGADVSHMNLHKTFCI 708 (954)
T ss_pred ------CCh-hhcCCCEEEecCCcccCc
Confidence 001 124689999999999964
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-11 Score=126.22 Aligned_cols=157 Identities=15% Similarity=0.076 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHhHhCCCcEEEeccH-HHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 150 NYHRLLESCLADLKKKEDCLLCPTG-FAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~e~alv~~sG-~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
-...+.|+.+|+.+|++++.+..+| +.+|.+++.+++.+ ||.|++|+.+|.|+.+++.++ |
T Consensus 195 G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~~--------------Gd~VLvdRN~HKSv~~aLils----g 256 (713)
T PRK15399 195 GPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPA--------------GSTLLIDRNCHKSLAHLLMMS----D 256 (713)
T ss_pred hHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcCC--------------CCEEEeecccHHHHHHHHHHc----C
Confidence 4568899999999999998777555 77999999998875 899999999999999999998 8
Q ss_pred cEEEEeeCC----------C-----HHHHHHHHhcCCC--C-cEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEE-EEec
Q 019931 229 VEVFVYKHC----------D-----MSHLKTLLSCCTM--R-KKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLL-VLDD 289 (334)
Q Consensus 229 ~~v~~~~~~----------D-----~~~Le~~l~~~~~--~-~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~L-ivDe 289 (334)
+.++++... + .+.+++++++.+. + ..+|++.+.| +|.+.++++|.++| |+.+ ++||
T Consensus 257 a~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY--dGi~yd~~~I~~~~---g~~~ilvDE 331 (713)
T PRK15399 257 VVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTY--DGLLYNTDWIKQTL---DVPSIHFDS 331 (713)
T ss_pred CeeEEecccccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCC--CceeeCHHHHHHHh---CCCEEEEec
Confidence 888775421 3 3889999987642 1 3456666644 89999999999998 6666 6999
Q ss_pred CcccccccCCCcccccccCCC--CCccEE---EecCcccccC--CccEE
Q 019931 290 AHGTFVCGKNGGGVAEQFNCE--RDVDIC---VGTLSKAAGC--QGGFI 331 (334)
Q Consensus 290 Ah~~Gv~G~~G~g~~~~~~~~--~~~Div---~~SlsKa~G~--~GG~i 331 (334)
||+.- +.-.. .+.....+. +.+|.+ +-|.+|.+++ ++++|
T Consensus 332 Ahgah-~~F~p-~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~i 378 (713)
T PRK15399 332 AWVPY-THFHP-IYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLI 378 (713)
T ss_pred cchhh-hhcCc-ccCCcChhhCCCCCCeeeeeeeehhccccccchheee
Confidence 99843 21111 011112221 234655 9999999986 34544
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=123.30 Aligned_cols=154 Identities=19% Similarity=0.163 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHhHhCCCcEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 150 NYHRLLESCLADLKKKEDCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~e~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
-.+.+.|+..|+.+|+++..|. ++-+.||..++.+++.+ ||.|++|+.+|.|+.+++.++ |
T Consensus 70 G~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~~--------------GD~VLvdRN~HKSi~~glila----G 131 (557)
T COG1982 70 GPIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTP--------------GDKVLVDRNCHKSIHHGLILA----G 131 (557)
T ss_pred ccHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcCC--------------CCEEEecCCccHHHHHHHHHc----C
Confidence 3458899999999999987666 55578999999998875 899999999999999999888 7
Q ss_pred cEEEEeeC-----------CCHHHHHHHHhcCCCC-cEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccc
Q 019931 229 VEVFVYKH-----------CDMSHLKTLLSCCTMR-KKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVC 296 (334)
Q Consensus 229 ~~v~~~~~-----------~D~~~Le~~l~~~~~~-~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~ 296 (334)
+..++... -+.+.+++.+.+.+.. +.+|++.+.| +|.+.++++|++.++++++|+.+|++|..- +
T Consensus 132 a~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY--dGv~~n~~~i~~~~~~~~a~v~~deah~~~-~ 208 (557)
T COG1982 132 ATPVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTY--DGVCYNLRKIVELLHHYGAWVLYDEAHPAH-F 208 (557)
T ss_pred CceEEecCCCCccccccCCCCHHHHHHHHHhChhhheeEEEecCcc--ceEeecHHHHHHHHhhcCceEEhhhcCccc-c
Confidence 87776542 2678888877765434 5567777766 899999999999999999999999999864 3
Q ss_pred cCCCcccccccCCCCCccEEEecCcccccC
Q 019931 297 GKNGGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 297 G~~G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
+..+.. . ...+...+|+++-|.+|.+++
T Consensus 209 ~~~~~l-~-~~~~~~~~~~~tqS~HK~l~a 236 (557)
T COG1982 209 DFSPML-P-ESALNGGADFVTQSTHKLLAA 236 (557)
T ss_pred cccccC-c-chhhhcCceEEEechhhhhhh
Confidence 322211 1 123335678999999999976
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.8e-11 Score=119.99 Aligned_cols=159 Identities=18% Similarity=0.189 Sum_probs=102.9
Q ss_pred EEEeccHHHHHHHHHHHHhhhhhhccCCC---cc-----------CCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEE
Q 019931 168 CLLCPTGFAANMAVIVAVGNIASLLAGDE---KS-----------FKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFV 233 (334)
Q Consensus 168 alv~~sG~~An~~ai~al~~~~~~~~~~~---~~-----------~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~ 233 (334)
.+++++|++||+.++.+.... .+++.. .. ...++.+|++....|.|+...+++...+ ..+++.
T Consensus 162 G~~tsGGS~ANl~Al~~AR~~--~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg-~~~v~~ 238 (522)
T TIGR03799 162 GAFCSGGTVANITALWVARNR--LLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIG-RDNLIA 238 (522)
T ss_pred eEEcCchHHHHHHHHHHHHHH--hccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCC-cccEEE
Confidence 577899999999998764432 111100 00 0013568899999999998887776211 115555
Q ss_pred eeCC-----CHHHHHHHHhcCC-CCcEE--EEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccc-cCCCcccc
Q 019931 234 YKHC-----DMSHLKTLLSCCT-MRKKV--VVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVC-GKNGGGVA 304 (334)
Q Consensus 234 ~~~~-----D~~~Le~~l~~~~-~~~~l--Vv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~-G~~G~g~~ 304 (334)
++.+ |+++|++++++.. .+++. |+...-.+.+|.+.|+++|.++|+++|+|++||.||+.+.+ .+..+..
T Consensus 239 vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~- 317 (522)
T TIGR03799 239 IKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHL- 317 (522)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHH-
Confidence 5532 8999999987431 23333 33334445789999999999999999999999999985432 1100100
Q ss_pred cccCCCCCccEEEecCcccc-cCCc-cEEe
Q 019931 305 EQFNCERDVDICVGTLSKAA-GCQG-GFIA 332 (334)
Q Consensus 305 ~~~~~~~~~Div~~SlsKa~-G~~G-G~i~ 332 (334)
..++ .++|.++.+.+|.+ ++.| |++.
T Consensus 318 -l~gl-e~aDSit~d~HK~l~~P~g~G~ll 345 (522)
T TIGR03799 318 -LKGI-ERADSVTIDAHKQLYVPMGAGMVL 345 (522)
T ss_pred -hcCc-hhCCEEEEChhhcCCcCcccEEEE
Confidence 0121 35799999999955 5665 5553
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-10 Score=111.23 Aligned_cols=178 Identities=20% Similarity=0.185 Sum_probs=125.7
Q ss_pred CCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEE-EeccHHHHHHHHHHHHhhhhhhccCCCccCC
Q 019931 124 SHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCL-LCPTGFAANMAVIVAVGNIASLLAGDEKSFK 200 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~al-v~~sG~~An~~ai~al~~~~~~~~~~~~~~~ 200 (334)
.+|+|++|+.+--.|. -+.-+ ...+.++.+.|...++.+ .++ +..||+.+.++++..+..|
T Consensus 16 v~~~V~~am~~~~~~h-~s~~F---~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~p------------ 79 (383)
T COG0075 16 VPPRVLLAMARPMVGH-RSPDF---VGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEP------------ 79 (383)
T ss_pred CCHHHHHHhcCCCCCC-CCHHH---HHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCC------------
Confidence 4788888876544431 12222 356788888999999976 454 4489999999999998876
Q ss_pred CCCeEEE-EcCCCchh-hHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHH
Q 019931 201 DEKIAIF-SDALNHAS-IIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVE 273 (334)
Q Consensus 201 ~~gd~Vl-~d~~~H~s-~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~ 273 (334)
||.|+ +....++- ..+.+... ++++..+.. -|++++++.|++.+ +.++|.+.+.=..+|...|+++
T Consensus 80 --gdkVLv~~nG~FG~R~~~ia~~~----g~~v~~~~~~wg~~v~p~~v~~~L~~~~-~~~~V~~vH~ETSTGvlnpl~~ 152 (383)
T COG0075 80 --GDKVLVVVNGKFGERFAEIAERY----GAEVVVLEVEWGEAVDPEEVEEALDKDP-DIKAVAVVHNETSTGVLNPLKE 152 (383)
T ss_pred --CCeEEEEeCChHHHHHHHHHHHh----CCceEEEeCCCCCCCCHHHHHHHHhcCC-CccEEEEEeccCcccccCcHHH
Confidence 44444 44333333 33333333 677777654 39999999998543 5667766666667899999999
Q ss_pred HHHHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccccC-Cc-cEEee
Q 019931 274 LVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAAGC-QG-GFIAC 333 (334)
Q Consensus 274 L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~G~-~G-G~i~~ 333 (334)
|.++|++||+++|||.+-++|-. . +.+ ..++|++++.--|++++ .| |+|+.
T Consensus 153 I~~~~k~~g~l~iVDaVsS~Gg~-----~----~~vd~wgiDv~itgSQK~l~~PPGla~v~~ 206 (383)
T COG0075 153 IAKAAKEHGALLIVDAVSSLGGE-----P----LKVDEWGIDVAITGSQKALGAPPGLAFVAV 206 (383)
T ss_pred HHHHHHHcCCEEEEEecccCCCc-----c----cchhhcCccEEEecCchhccCCCccceeEE
Confidence 99999999999999999887622 1 222 25689999999999976 45 55543
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=123.86 Aligned_cols=161 Identities=14% Similarity=0.051 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHhHhCCC--c-EEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhh
Q 019931 149 TNYHRLLESCLADLKKKE--D-CLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e--~-alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~ 224 (334)
....++.++++++++|++ . .++| +++++|+..++..+.- .+||.|++....|.++.....++.
T Consensus 77 ~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~-------------~~gd~Iv~t~~eH~svl~~~~~a~ 143 (805)
T PLN02724 77 SDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPW-------------SSESHFCYTLENHNSVLGIREYAL 143 (805)
T ss_pred HHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCC-------------CCCCeEEEeeccccchHHHHHHHH
Confidence 456789999999999963 3 3455 5667777766655421 136778888889999886655543
Q ss_pred hcCCcEEEEeeCC---------------CHHHHHHHHh----cC---CCCcEEEEEcCCCCCCCCccCHHHHHHHHHHc-
Q 019931 225 RTKMVEVFVYKHC---------------DMSHLKTLLS----CC---TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKY- 281 (334)
Q Consensus 225 ~~~g~~v~~~~~~---------------D~~~Le~~l~----~~---~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~- 281 (334)
+ .|++++.++.+ +.++|++.++ .. .+++++|++.+++|.+|.+.|++.|.++++..
T Consensus 144 ~-~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~ 222 (805)
T PLN02724 144 E-KGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQH 222 (805)
T ss_pred H-cCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcc
Confidence 2 37777776543 1144655532 10 13568999999999999999999776555532
Q ss_pred -------CCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCccccc-CCc-cEEe
Q 019931 282 -------GFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAG-CQG-GFIA 332 (334)
Q Consensus 282 -------ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G-~~G-G~i~ 332 (334)
++++++|.||+.|..- .++. .++|+++.|++|-|| +.| |++.
T Consensus 223 ~~~~~~g~~~v~vDaaQ~~g~~p---------iDv~~~~~Dfl~~S~HK~~GgP~G~G~L~ 274 (805)
T PLN02724 223 SNFSKSGRWMVLLDAAKGCGTSP---------PDLSRYPADFVVVSFYKIFGYPTGLGALL 274 (805)
T ss_pred cccccCcceEEEeehhhhcCCCC---------CChhhcCCCEEEEecceeccCCCCceEEE
Confidence 3579999999987431 2232 367999999999998 555 5543
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.9e-10 Score=110.21 Aligned_cols=155 Identities=15% Similarity=0.169 Sum_probs=110.9
Q ss_pred HHHHHHHhHhCCC--c--EEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCc
Q 019931 154 LLESCLADLKKKE--D--CLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMV 229 (334)
Q Consensus 154 ~LE~~La~~~g~e--~--alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~ 229 (334)
++-+.+++++|.+ . ..++++|+++|+.++.+.... + ++.+|++....|.|+..++++. |.
T Consensus 137 ~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~---~---------~~~vvy~S~~aH~Sv~KAa~ll----gi 200 (470)
T PLN02263 137 GVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREV---F---------PDGILYASRESHYSVFKAARMY----RM 200 (470)
T ss_pred HHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhh---c---------CCcEEEEcCCccHHHHHHHHhc----CC
Confidence 3444455556653 2 588899999999999765432 0 1347888889999999999988 67
Q ss_pred EEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCC-----EEEEecCcccccccCC
Q 019931 230 EVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF-----LLVLDDAHGTFVCGKN 299 (334)
Q Consensus 230 ~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga-----~LivDeAh~~Gv~G~~ 299 (334)
+++.++.+ |+++|++.|.+...++.+|+...-.-+.|.+-|+++|.++|+++|+ ||.||.|++..++ +-
T Consensus 201 ~~~~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~l-Pf 279 (470)
T PLN02263 201 ECVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMM-PF 279 (470)
T ss_pred cceEeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHh-hh
Confidence 77777643 8999999997643335555545445578999999999999999997 9999999985544 11
Q ss_pred CcccccccCCCCCccEEEecCcccccC
Q 019931 300 GGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 300 G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
-+. .+.+.....+|-+..+.+|.+++
T Consensus 280 ~~~-~~~~df~~~vDSIsvD~HK~l~~ 305 (470)
T PLN02263 280 VKR-APKVTFKKPIGSVSVSGHKFVGC 305 (470)
T ss_pred ccc-ccccCCCcCccEEEECCccccCC
Confidence 111 11122233488899999999976
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=125.03 Aligned_cols=164 Identities=16% Similarity=0.134 Sum_probs=118.0
Q ss_pred ccCchHHHHHHHHHHHhHhCCCcEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHh
Q 019931 145 ICGYTNYHRLLESCLADLKKKEDCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIA 223 (334)
Q Consensus 145 ~~G~~~~~~~LE~~La~~~g~e~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls 223 (334)
..|+.....++++.|++++|.+.+-+. ++|++++.+.+.++... ...+++ .+.++|++....|.+....+...
T Consensus 537 ~qG~l~~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~--~~~~G~----~~r~~vlis~~aH~snp~sa~~~ 610 (954)
T PRK05367 537 AAGYRELIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAY--HESRGE----GHRDVCLIPSSAHGTNPASAVMA 610 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHH--hhccCC----CCCCEEEEEchhhhhhHHHHHHC
Confidence 345667788999999999999887666 56778886766544321 001111 11356888889999988777766
Q ss_pred hhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCC-ccCHHHHHHHHHHcCCEEEEecCccccccc
Q 019931 224 ERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGD-FAPMVELVKLRRKYGFLLVLDDAHGTFVCG 297 (334)
Q Consensus 224 ~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~-~~pL~~L~ela~k~ga~LivDeAh~~Gv~G 297 (334)
|.+++.++.+ |+++|++++++.+.++.+|++..+... |. ..|+++|+++|+++|+++++|.||..+.++
T Consensus 611 ----G~~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~-G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~ 685 (954)
T PRK05367 611 ----GMKVVVVACDENGNIDLDDLRAKAEEHADNLAAIMITYPSTH-GVFEETIREICEIVHEHGGQVYLDGANMNAQVG 685 (954)
T ss_pred ----CCEEEEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCC-eeecCCHHHHHHHHHHcCCEEEEECcChhhccC
Confidence 8888887753 889999999764335667777666655 54 478999999999999999999999866443
Q ss_pred CCCcccccccCCCCCccEEEecCcccccC
Q 019931 298 KNGGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 298 ~~G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
-. . ...-++|+++++++|.|+.
T Consensus 686 l~------~-pg~~GADi~~~s~HK~f~~ 707 (954)
T PRK05367 686 LA------R-PGDIGADVSHLNLHKTFCI 707 (954)
T ss_pred CC------C-hhhcCCCEEEecCcccCCC
Confidence 21 1 1124589999999999864
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.3e-12 Score=117.15 Aligned_cols=205 Identities=17% Similarity=0.196 Sum_probs=139.6
Q ss_pred hhcccceeEEEeecCccCCCCCCHHHHHHH-HHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHH
Q 019931 103 TFARQFKRLLLFSGNDYLGLSSHPTIAKAA-ARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAV 181 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn~yLgl~~~p~v~~a~-~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~a 181 (334)
+.+++|.+|||..+|--.+=-.||+|.+|. ++...-++.+|+.. ..+.+-.++.++.+-+..-++|++||++||..+
T Consensus 41 mfDE~g~~yLDCInNVaHvghchp~VV~A~~kQmat~~tN~RFlh--d~lv~cA~~l~stlPeLsvc~F~NSGSEANDLA 118 (452)
T KOG1403|consen 41 MFDEEGTRYLDCINNVAHVGHCHPEVVRAGAKQMATISTNNRFLH--DELVQCARTLTSTLPELSVCFFVNSGSEANDLA 118 (452)
T ss_pred eeccCcccHHHHhhhhhhcccCCHHHHHHHHHHHhHhcccchhhH--HHHHHHHHHHhhcCCCceEEEEecCCchhhHHH
Confidence 567889999997777544434689888854 66677777778775 445444444444454555678889999999999
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc--CC-----cEEEEe-e------------C---CC
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT--KM-----VEVFVY-K------------H---CD 238 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~--~g-----~~v~~~-~------------~---~D 238 (334)
++...+ .++..|+|..|..+|+-+..-+.++..+ .+ .+.+.+ | + .|
T Consensus 119 LRLAR~-----------ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~ 187 (452)
T KOG1403|consen 119 LRLARN-----------FTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDAD 187 (452)
T ss_pred HHHHHh-----------hcccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCccc
Confidence 985332 3446899999999998766555555211 01 111111 1 1 12
Q ss_pred -----HHHHHHHHhcC---CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc--
Q 019931 239 -----MSHLKTLLSCC---TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-- 304 (334)
Q Consensus 239 -----~~~Le~~l~~~---~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-- 304 (334)
.+.++++++.. ..+..+++.|+..|-.|.+.| ++++++..+.+|-+.|.||+|.. +|+-|+.++
T Consensus 188 ~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvG--FGRvG~hyWaf 265 (452)
T KOG1403|consen 188 MGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVG--FGRVGSHYWAF 265 (452)
T ss_pred chhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhc--ccccchhhhhh
Confidence 23455555432 234567889999999998877 77888899999999999999984 788887654
Q ss_pred cccCCCCCccEEEecCcccccC
Q 019931 305 EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 305 ~~~~~~~~~Div~~SlsKa~G~ 326 (334)
+.++..| ||+ |++|.+|-
T Consensus 266 q~y~fiP--DIV--tmgKpmGN 283 (452)
T KOG1403|consen 266 QTYNFIP--DIV--TMGKPMGN 283 (452)
T ss_pred hhhcccc--chh--eecccCCC
Confidence 4566667 455 89999974
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.8e-11 Score=115.00 Aligned_cols=201 Identities=12% Similarity=0.062 Sum_probs=130.3
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNI 188 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~ 188 (334)
.-+||+-|...-+.. .++.++|+.. |.- .+|.++...+||+.+++++|.|+++.+++|..|+..+++.++++
T Consensus 41 dV~IDLrSDTgT~ap-S~~m~aAM~~-GDD------~Y~gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~~ 112 (467)
T TIGR02617 41 DVFIDLLTDSGTGAV-TQSMQAAMMR-GDE------AYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKK 112 (467)
T ss_pred CeEEECccCCCCCCC-CHHHHHHHHc-CCc------ccccCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhccc
Confidence 467898888755443 5666666654 321 34445667899999999999999999999999999999988873
Q ss_pred hhhccCCCccCCCCCeEEEEcCC----Cchh---hH-HHHHHhhhcCCcEEEEe--------------e-CCCHHHHHHH
Q 019931 189 ASLLAGDEKSFKDEKIAIFSDAL----NHAS---II-DGIRIAERTKMVEVFVY--------------K-HCDMSHLKTL 245 (334)
Q Consensus 189 ~~~~~~~~~~~~~~gd~Vl~d~~----~H~s---~~-~g~~ls~~~~g~~v~~~--------------~-~~D~~~Le~~ 245 (334)
+|+.+.++.. .|.. .. ....++ |+.++.. + ..|+++|+++
T Consensus 113 -------------~g~e~g~~~~~~~v~hn~~fett~g~a~l~----G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~ 175 (467)
T TIGR02617 113 -------------REQEKGLDRSKMVAFSNYFFDTTQGHSQIN----GCTARNVYTKEAFDTGVRYDFKGNFDLEGLERG 175 (467)
T ss_pred -------------ccccccccccccccceEEEEecchHHHHHc----CceeecccchhhcccccCCCCCCCcCHHHHHHH
Confidence 2444443332 2222 11 223344 5544432 1 1389999999
Q ss_pred HhcCC-CCcEEEEEcCCCCC-CCCccC---HHHHHHHHHHcCCEEEEecCcccc-cc-------cCCCccccccc-CCCC
Q 019931 246 LSCCT-MRKKVVVTDSLFSM-DGDFAP---MVELVKLRRKYGFLLVLDDAHGTF-VC-------GKNGGGVAEQF-NCER 311 (334)
Q Consensus 246 l~~~~-~~~~lVv~e~v~n~-~G~~~p---L~~L~ela~k~ga~LivDeAh~~G-v~-------G~~G~g~~~~~-~~~~ 311 (334)
|++.. .+...+.+.-.+|. .|.+.| +.++.++|++||+.+++|.|.-+- .+ +..+....+.. .+..
T Consensus 176 I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~ 255 (467)
T TIGR02617 176 IEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYK 255 (467)
T ss_pred HhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhc
Confidence 98642 12333333333444 566666 667889999999999999987542 22 22233322210 1124
Q ss_pred CccEEEecCcccccC-CccEEeeC
Q 019931 312 DVDICVGTLSKAAGC-QGGFIACR 334 (334)
Q Consensus 312 ~~Div~~SlsKa~G~-~GG~i~~~ 334 (334)
.+|.++.|++|.+|+ .||+++++
T Consensus 256 ~aDsvt~slsKglgApvGg~Lag~ 279 (467)
T TIGR02617 256 YADMLAMSAKKDAMVPMGGLLCFK 279 (467)
T ss_pred cCCEEEEEcCCCCCCcccceEEec
Confidence 578999999999987 69999875
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-09 Score=104.81 Aligned_cols=162 Identities=17% Similarity=0.165 Sum_probs=118.1
Q ss_pred HHHHHHHHhHhC----------CCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHH
Q 019931 153 RLLESCLADLKK----------KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRI 222 (334)
Q Consensus 153 ~~LE~~La~~~g----------~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~l 222 (334)
..+.+++|+|.. .++.++.++++.||.+....|+.| ||..++..++++..-..++.
T Consensus 124 ~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadp--------------gdafLvPtPyY~gfdrdl~~ 189 (471)
T KOG0256|consen 124 PSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADP--------------GDAFLVPTPYYPGFDRDLRW 189 (471)
T ss_pred hHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCC--------------CceeeecCCCCCccccccee
Confidence 456666666542 356888899999999999888876 88888888888776544432
Q ss_pred hhhcCCcEEEEeeCC-------CHHHHHHHHhcC---CCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEec
Q 019931 223 AERTKMVEVFVYKHC-------DMSHLKTLLSCC---TMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDD 289 (334)
Q Consensus 223 s~~~~g~~v~~~~~~-------D~~~Le~~l~~~---~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDe 289 (334)
..|++++++... +.++||+++++. ..+.+-|++.+|+||.|++.+ |..|.++|.++++.||+||
T Consensus 190 ---rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DE 266 (471)
T KOG0256|consen 190 ---RTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDE 266 (471)
T ss_pred ---ccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeeh
Confidence 238888887642 688999888754 235678888899999999887 6678888999999999999
Q ss_pred CcccccccCCCc-ccccccC-C--CCCccEEEecCcccccCCc---cEE
Q 019931 290 AHGTFVCGKNGG-GVAEQFN-C--ERDVDICVGTLSKAAGCQG---GFI 331 (334)
Q Consensus 290 Ah~~Gv~G~~G~-g~~~~~~-~--~~~~Div~~SlsKa~G~~G---G~i 331 (334)
+++.-|++..+. .+++... . .++..=++-|+||=||..| |+|
T Consensus 267 Iya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGvi 315 (471)
T KOG0256|consen 267 IYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVI 315 (471)
T ss_pred hhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEE
Confidence 999988876432 2222111 1 2222245679999999887 555
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.13 E-value=3e-09 Score=107.45 Aligned_cols=173 Identities=15% Similarity=0.101 Sum_probs=109.3
Q ss_pred HHHHHHHHhHhCCCc---------EEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHh
Q 019931 153 RLLESCLADLKKKED---------CLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIA 223 (334)
Q Consensus 153 ~~LE~~La~~~g~e~---------alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls 223 (334)
.++-+.+++++|.+. .+++++|++||+.++.+..... +-..+.. ..+.-+|++....|.|+..++++.
T Consensus 125 ~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~-~~~~g~~--~~~~~vv~~S~~aH~Sv~Kaa~~l 201 (490)
T PLN02880 125 MIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRV-LRKVGKN--ALEKLVVYASDQTHSALQKACQIA 201 (490)
T ss_pred HHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHH-HHHhccc--ccCCeEEEEcCCchHHHHHHHHHc
Confidence 344445555666543 5788999999999987644321 0000000 002346777788899999999887
Q ss_pred hhcCCcEEEEeeC-------CCHHHHHHHHhcCC---CCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCccc
Q 019931 224 ERTKMVEVFVYKH-------CDMSHLKTLLSCCT---MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGT 293 (334)
Q Consensus 224 ~~~~g~~v~~~~~-------~D~~~Le~~l~~~~---~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~ 293 (334)
..+ ...++.++. .|+++|++.|++.. ..+.+|+...-.-.+|.+-|+++|.++|++||+|++||.||+.
T Consensus 202 Glg-~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg 280 (490)
T PLN02880 202 GIH-PENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAG 280 (490)
T ss_pred CCC-HHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHH
Confidence 211 012333332 38999999997531 1244555444445679999999999999999999999999997
Q ss_pred cccc-CCCcccccccCCCCCccEEEecCcccccC-Cc-cEEe
Q 019931 294 FVCG-KNGGGVAEQFNCERDVDICVGTLSKAAGC-QG-GFIA 332 (334)
Q Consensus 294 Gv~G-~~G~g~~~~~~~~~~~Div~~SlsKa~G~-~G-G~i~ 332 (334)
+++- +..+.. ..++ ..+|.++..++|-++. .| |++.
T Consensus 281 ~~~~~~~~~~~--l~gi-e~aDSit~d~HKwl~~P~~~g~ll 319 (490)
T PLN02880 281 SACICPEYRHY--IDGV-EEADSFNMNAHKWFLTNFDCSLLW 319 (490)
T ss_pred HHHhCHHHHHH--hcCc-hhcCEEEECchhhcCCCccEEEEE
Confidence 6441 110000 1122 3579999999999965 33 4443
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-09 Score=104.34 Aligned_cols=169 Identities=20% Similarity=0.147 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHh----HhCCC---------cEEEeccHHHHHHHHHHHHhhhhh--hccCCCccCCCCCeEEEEcCCCc
Q 019931 149 TNYHRLLESCLAD----LKKKE---------DCLLCPTGFAANMAVIVAVGNIAS--LLAGDEKSFKDEKIAIFSDALNH 213 (334)
Q Consensus 149 ~~~~~~LE~~La~----~~g~e---------~alv~~sG~~An~~ai~al~~~~~--~~~~~~~~~~~~gd~Vl~d~~~H 213 (334)
.+...++|+++.+ ++|.+ ..+++++|++||+.++.+...... ....+.. ..+.-+|++....|
T Consensus 74 ~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~--~~~~~~i~~s~~aH 151 (373)
T PF00282_consen 74 SPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVE--EIPKPVIYVSEQAH 151 (373)
T ss_dssp SHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTT--HCSSEEEEEETTS-
T ss_pred ccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccc--cccccccccccccc
Confidence 3555666665555 55655 258889999999999976543210 0000000 01234677888899
Q ss_pred hhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCC--CCcE-EEEEcCCCCCCCCccCHHHHHHHHHHcCCEE
Q 019931 214 ASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCT--MRKK-VVVTDSLFSMDGDFAPMVELVKLRRKYGFLL 285 (334)
Q Consensus 214 ~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~--~~~~-lVv~e~v~n~~G~~~pL~~L~ela~k~ga~L 285 (334)
.|+..++.+. |..++.++.+ |+++|+++|++.. ..+. +|+...-...+|.+-|+++|+++|+++++||
T Consensus 152 ~S~~Kaa~~l----Glg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wl 227 (373)
T PF00282_consen 152 YSIEKAARIL----GLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWL 227 (373)
T ss_dssp THHHHHHHHT----TSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EE
T ss_pred cHHHHhccee----eeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceee
Confidence 9999999988 6667777643 8899999987642 1222 4544444556899999999999999999999
Q ss_pred EEecCccccc-ccCCCcccccccCCCCCccEEEecCcccccC
Q 019931 286 VLDDAHGTFV-CGKNGGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 286 ivDeAh~~Gv-~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
.||.|++..+ +-+.-+.. ..++ +.+|-+..+++|.++.
T Consensus 228 HVDaA~gg~~~~~~~~~~~--~~gi-~~adSit~d~HK~l~~ 266 (373)
T PF00282_consen 228 HVDAAYGGSALLSPEYRHL--LFGI-ERADSITIDPHKWLGV 266 (373)
T ss_dssp EEEETTGGGGGGHCTTGGG--GTTG-GGESEEEEETTTTTS-
T ss_pred eeccccccccccccccccc--cccc-ccccccccchhhhhcC
Confidence 9999998533 22322222 1233 5678889999999986
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.1e-10 Score=107.66 Aligned_cols=175 Identities=13% Similarity=0.089 Sum_probs=115.7
Q ss_pred CCHH-HHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC---cEEEec-cHHHHHHHHHHHHhhhhhhccCCCcc
Q 019931 124 SHPT-IAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE---DCLLCP-TGFAANMAVIVAVGNIASLLAGDEKS 198 (334)
Q Consensus 124 ~~p~-v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e---~alv~~-sG~~An~~ai~al~~~~~~~~~~~~~ 198 (334)
-+|+ |++++.+.-.+.. +|-. -.....++.++.|+++++.+ .+++++ ||+.++..++..+..+
T Consensus 23 ~~~~~v~~a~~~~~~~~~-hr~~-~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~---------- 90 (378)
T PRK03080 23 KRPGWQLEALADALLGRS-HRQK-PVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGA---------- 90 (378)
T ss_pred CChHHHHHHHHhhhcccC-cCCH-HHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCC----------
Confidence 3677 8888876543311 1111 12466789999999999963 466665 8999999999887642
Q ss_pred CCCCCeEEEEcCCCchhhHHHHHHhhhcCCc-EEEEeeCC--CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHH
Q 019931 199 FKDEKIAIFSDALNHASIIDGIRIAERTKMV-EVFVYKHC--DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELV 275 (334)
Q Consensus 199 ~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~-~v~~~~~~--D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ 275 (334)
+++.|+.. ..|.+-+... +.+ ..+. +++.++.. ..-++++ ++ .+++|.+.++.+.+|.+.|+++|.
T Consensus 91 ---~~~~vi~~-g~f~~~~~~~-~~~-~~g~~~v~~~~~~~g~~~d~~~-i~----~~~~V~~~h~~t~tG~~~pi~~I~ 159 (378)
T PRK03080 91 ---RRVDHLAW-ESFGSKWATD-VVK-QLKLEDPRVLEADYGSLPDLSA-VD----FDRDVVFTWNGTTTGVRVPVARWI 159 (378)
T ss_pred ---CcceEEEe-CHHHHHHHHH-HHh-hcCCCCceEeccCCCCCCCHhh-cC----CCCCEEEEecCCccceeccchhhc
Confidence 24556654 5666633221 111 1255 66655532 1112333 32 245688889999999999999999
Q ss_pred HHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC-Cc-cEEee
Q 019931 276 KLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC-QG-GFIAC 333 (334)
Q Consensus 276 ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~-~G-G~i~~ 333 (334)
+ +++|+++++|.+|++|.. .+.+. ++|++++|.+|.|++ .| |++..
T Consensus 160 ~--~~~g~~~vVDa~qs~G~~---------pidv~-~iD~~~~s~~K~l~~P~G~g~l~v 207 (378)
T PRK03080 160 G--ADREGLTICDATSAAFAL---------PLDWS-KLDVYTFSWQKVLGGEGGHGMAIL 207 (378)
T ss_pred c--ccCCCeEEEecccccccC---------CCCHH-HCcEEEEehhhhCCCCCceEEEEE
Confidence 9 889999999999998753 12333 379999999999965 66 66543
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.9e-10 Score=108.03 Aligned_cols=176 Identities=14% Similarity=0.048 Sum_probs=111.3
Q ss_pred CCHHHHHHHHHhc-----CCCCcccccc---CchHHHHHHHHHHHhHhCC--C-cEEEecc-HHHHHHHHHHHHhhhhhh
Q 019931 124 SHPTIAKAAARHG-----MGPRGSALIC---GYTNYHRLLESCLADLKKK--E-DCLLCPT-GFAANMAVIVAVGNIASL 191 (334)
Q Consensus 124 ~~p~v~~a~~~~g-----~g~~~sr~~~---G~~~~~~~LE~~La~~~g~--e-~alv~~s-G~~An~~ai~al~~~~~~ 191 (334)
.++.|++|+.++- .|.+.+.... -.....++.+++++++++. + .++++++ |++|+..++..+..++
T Consensus 10 ~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~-- 87 (355)
T cd00611 10 LPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDK-- 87 (355)
T ss_pred CCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCC--
Confidence 4788999886542 2222222221 1126678999999999995 2 3566644 9999999998876421
Q ss_pred ccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHH-HHHhcCCCCcEEEEEcCCCCC
Q 019931 192 LAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLK-TLLSCCTMRKKVVVTDSLFSM 264 (334)
Q Consensus 192 ~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le-~~l~~~~~~~~lVv~e~v~n~ 264 (334)
+++++|+.....|.+ ..++++ .+.+++.++.. ++.+++ ..+ .+++++|.+.+..+.
T Consensus 88 ---------~~~~~i~~g~~~~~~----~~~a~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~lV~~~h~~t~ 150 (355)
T cd00611 88 ---------GTADYVVTGAWSAKA----AKEAKR-YGGVVVIVAAKEEGKYTKIPDVETWDL---APDAAYVHYCSNETI 150 (355)
T ss_pred ---------CeEEEEECCHHHHHH----HHHHHh-cCCCcEEEecccccCCCCCCCHhhcCC---CCCCCEEEEeCCccc
Confidence 247777764444433 223222 25666666542 322222 222 247899999999999
Q ss_pred CCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc-cEEee
Q 019931 265 DGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG-GFIAC 333 (334)
Q Consensus 265 ~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G-G~i~~ 333 (334)
+|...+ ++++.||++++||.+|++|.. ..++. ..|+.+.|-.|.||+.| |++..
T Consensus 151 tG~~~~-----~i~~~~g~~~~VDa~qs~g~~---------~idv~-~~~~~~ss~~K~lGP~G~g~l~~ 205 (355)
T cd00611 151 HGVEFD-----EVPDTGGVPLVADMSSNILSR---------PIDVS-KFGVIYAGAQKNLGPAGVTVVIV 205 (355)
T ss_pred ccEEcc-----eecccCCCeEEEEccccccCC---------CCCHH-HhCEEEeecccccCCCceEEEEE
Confidence 998732 455669999999999998743 12222 23566666899999987 66654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.1e-09 Score=103.32 Aligned_cols=172 Identities=23% Similarity=0.219 Sum_probs=111.6
Q ss_pred HHHHHHHH----HhHhCC-Cc--EEEeccHHHHHHHHHHHHhhhhhh--ccCCCccCCCCCeEEEEcCCCchhhHHHHHH
Q 019931 152 HRLLESCL----ADLKKK-ED--CLLCPTGFAANMAVIVAVGNIASL--LAGDEKSFKDEKIAIFSDALNHASIIDGIRI 222 (334)
Q Consensus 152 ~~~LE~~L----a~~~g~-e~--alv~~sG~~An~~ai~al~~~~~~--~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~l 222 (334)
..++|+++ +++++. +. ..++++|++||+.++.+......- ......+. +.-.|++....|.|....+++
T Consensus 99 a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~--~~P~ii~s~~aH~s~~Kaa~~ 176 (460)
T COG0076 99 AAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPG--GKPNIVCSETAHFSFEKAARY 176 (460)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccC--CCCeEEecCcchhHHHHHHHH
Confidence 34455554 455665 33 478899999999999876554210 00000000 012688888999999999988
Q ss_pred hhhcCCcEEEEee----C--CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccc
Q 019931 223 AERTKMVEVFVYK----H--CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVC 296 (334)
Q Consensus 223 s~~~~g~~v~~~~----~--~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~ 296 (334)
. |..+..++ + -|+++|++++.+..-.. +|+...-+-++|.+-|+++|.++|++|+++|+||.|.+..++
T Consensus 177 l----G~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g-~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~ 251 (460)
T COG0076 177 L----GLGLRRVPTVPTDYRIDVDALEEAIDENTIGG-VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLL 251 (460)
T ss_pred h----CCCceeEEeccCccccCHHHHHHHHHhhccCc-eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceee
Confidence 7 44333322 2 38999999998743111 255555555789999999999999999999999999986544
Q ss_pred c-CCCcccccccCCCCCccEEEecCcccccC-Cc-cEEe
Q 019931 297 G-KNGGGVAEQFNCERDVDICVGTLSKAAGC-QG-GFIA 332 (334)
Q Consensus 297 G-~~G~g~~~~~~~~~~~Div~~SlsKa~G~-~G-G~i~ 332 (334)
- ....+. ..+++ +.+|-++.+++|.+.. .| |+++
T Consensus 252 pf~~~~~~-~~f~l-~~vdSIt~d~HK~g~aP~~~G~il 288 (460)
T COG0076 252 PFLEPDGR-WDFGL-EGVDSITVDGHKYGLAPIGCGVVL 288 (460)
T ss_pred cccCccch-hhcCC-CCceEEEECcccccCCCCCceEEE
Confidence 1 111111 01333 5688999999999854 33 5543
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-08 Score=102.86 Aligned_cols=170 Identities=18% Similarity=0.129 Sum_probs=108.8
Q ss_pred HHHHHHHH----HHHhHhCCCc---------EEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhh
Q 019931 150 NYHRLLES----CLADLKKKED---------CLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASI 216 (334)
Q Consensus 150 ~~~~~LE~----~La~~~g~e~---------alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~ 216 (334)
+...++|+ .|++++|.+. .+++++|++||+.++.+..... +..... ...+.-+|++....|.|+
T Consensus 166 Pa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~--~~~~g~-~~~~~~vvy~S~~aH~Sv 242 (539)
T PLN02590 166 PAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRI--LKKVGK-TLLPQLVVYGSDQTHSSF 242 (539)
T ss_pred chhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHH--Hhhhcc-cCCCCEEEEecCCchHHH
Confidence 34444555 4555566442 5788999999999887643321 100000 001234677888899999
Q ss_pred HHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCC---CCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEE
Q 019931 217 IDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCT---MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLV 286 (334)
Q Consensus 217 ~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~---~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~Li 286 (334)
..++++.... ..+++.++. .|+++|++.|++.. ..+.+|+...-.-.+|.+-||++|.++|++||+||+
T Consensus 243 ~KAa~ilGlg-~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlH 321 (539)
T PLN02590 243 RKACLIGGIH-EENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLH 321 (539)
T ss_pred HHHHHHcCCC-cccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEE
Confidence 9999887321 113444442 38999999997532 123444444333457999999999999999999999
Q ss_pred EecCcccccc-cCCCcccccccCCCCCccEEEecCcccccC
Q 019931 287 LDDAHGTFVC-GKNGGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 287 vDeAh~~Gv~-G~~G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
||.|++..++ -+..+.. ..|+ +.+|-+...++|.+..
T Consensus 322 VDaA~GG~al~~~~~r~~--~~Gi-e~ADSit~D~HK~l~~ 359 (539)
T PLN02590 322 VDAAYAGNACICPEYRKF--IDGI-ENADSFNMNAHKWLFA 359 (539)
T ss_pred EecchhhhhhcChhhHHH--hcCC-ccCCEEEECchhhcCc
Confidence 9999986542 2221111 1233 4578889999999965
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-08 Score=97.33 Aligned_cols=185 Identities=22% Similarity=0.221 Sum_probs=106.4
Q ss_pred CHHHHHHHHHhcCCCCc--cccccCch-HHHHHHHHHHHhHhCCCcEEEe---ccHHHHHHHHHHHHhhhhhhccCCCcc
Q 019931 125 HPTIAKAAARHGMGPRG--SALICGYT-NYHRLLESCLADLKKKEDCLLC---PTGFAANMAVIVAVGNIASLLAGDEKS 198 (334)
Q Consensus 125 ~p~v~~a~~~~g~g~~~--sr~~~G~~-~~~~~LE~~La~~~g~e~alv~---~sG~~An~~ai~al~~~~~~~~~~~~~ 198 (334)
+.+|.+|+++...+... ...-+|+. .-.+.||+-.|+.+|+|++++= .||++|+..++.++++|
T Consensus 26 q~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~Lrp---------- 95 (403)
T PF06838_consen 26 QLKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLRP---------- 95 (403)
T ss_dssp HHHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--T----------
T ss_pred HHHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCCC----------
Confidence 34566677665443211 11223443 4568899999999999999985 79999999999999987
Q ss_pred CCCCCeEEEEc-CCCchhhHHHHHHhh------hcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCC--
Q 019931 199 FKDEKIAIFSD-ALNHASIIDGIRIAE------RTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSM-- 264 (334)
Q Consensus 199 ~~~~gd~Vl~d-~~~H~s~~~g~~ls~------~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~-- 264 (334)
||.+++- ..-+-.+...+-+.. ...|.+...++. .|.+.+++.+++ ++|+|.+.=--.-
T Consensus 96 ----GD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~---~tk~v~IQRSrGYs~ 168 (403)
T PF06838_consen 96 ----GDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALKP---NTKMVLIQRSRGYSW 168 (403)
T ss_dssp ----T-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHHT---TEEEEEEE-S-TTSS
T ss_pred ----CCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhcc---CceEEEEecCCCCCC
Confidence 6666642 222223333332221 112455555543 289999999984 7888886521111
Q ss_pred --CCCccCHHHHHHHHHH--cCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC----CccEEeeC
Q 019931 265 --DGDFAPMVELVKLRRK--YGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC----QGGFIACR 334 (334)
Q Consensus 265 --~G~~~pL~~L~ela~k--~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~----~GG~i~~~ 334 (334)
.-.+..++++.++.|+ -+++++||+.|+-.+- + ..+..-++|++.|||=|..|+ .||||+|+
T Consensus 169 R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE--~------~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr 238 (403)
T PF06838_consen 169 RPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVE--T------QEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGR 238 (403)
T ss_dssp S----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTS--S------S-GGGGT-SEEEEETTSGGGTTT-SS-EEEEES
T ss_pred CCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceecc--c------cCccccchhheeccceeCCCCCccCcCCEEech
Confidence 1123446666666665 4799999999875321 1 122334689999999999975 79999984
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.03 E-value=5e-10 Score=108.90 Aligned_cols=174 Identities=13% Similarity=0.033 Sum_probs=108.5
Q ss_pred CCHHHHHHHHHhcCCC--CccccccCchHHHHHHHHHHHhHhCCC---cEEEe-ccHHHHHHHHHHHHhhhhhhccCCCc
Q 019931 124 SHPTIAKAAARHGMGP--RGSALICGYTNYHRLLESCLADLKKKE---DCLLC-PTGFAANMAVIVAVGNIASLLAGDEK 197 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~--~~sr~~~G~~~~~~~LE~~La~~~g~e---~alv~-~sG~~An~~ai~al~~~~~~~~~~~~ 197 (334)
-+|+|.+++.+-+.+. .++|-.. .....++.++.++++++.+ .++++ .||+.++..++..+...
T Consensus 14 ~~~~v~~a~~~~~~~~~~~~hr~~~-f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~--------- 83 (361)
T TIGR01366 14 VRLEQLQALTTTAASLFGTSHRQAP-VKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEK--------- 83 (361)
T ss_pred CCHHHHHHHHhcCccccccCcCChH-HHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcccc---------
Confidence 3788888765432111 1122111 1366789999999999972 35554 66999999999877532
Q ss_pred cCCCCCeEEEEcCCCchhhH-HHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHH
Q 019931 198 SFKDEKIAIFSDALNHASII-DGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVK 276 (334)
Q Consensus 198 ~~~~~gd~Vl~d~~~H~s~~-~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~e 276 (334)
+.++|. . ..|.+-+ +......+ ..++..++...-+.++..+. +++++|++.+..|.+|.+.|+++|
T Consensus 84 ----~~l~i~-~-G~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~lV~~~h~et~tG~~~pi~~I-- 150 (361)
T TIGR01366 84 ----KSLHLS-F-GEFSSKFAKAVKLAPW--LGEPIIVTADPGSAPEPQAD---PGVDVIAWAHNETSTGVAVPVRRP-- 150 (361)
T ss_pred ----cccEEe-c-CHHHHHHHHHHHhhhc--cCCceEEecCCCCCCCCccC---CCCCEEEEcccCCccceecccccc--
Confidence 233342 2 2333211 11111111 11333333221223333232 478999999999999999999887
Q ss_pred HHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCccEE
Q 019931 277 LRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFI 331 (334)
Q Consensus 277 la~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~GG~i 331 (334)
++++|+++++|.++++|.. ...+. ++|+++.|-.|.+|+.||+.
T Consensus 151 -~~~~g~~~iVDavqs~g~~---------~idv~-~~D~~~~s~~K~lg~~~Gl~ 194 (361)
T TIGR01366 151 -EGSDDALVVIDATSGAGGL---------PVDIA-ETDVYYFAPQKNFASDGGLW 194 (361)
T ss_pred -cccCCCeEEEEcCccccCC---------CCCHH-HCCEEEEEchhhcCCCCceE
Confidence 5899999999999998632 12333 37999999999999987653
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.4e-10 Score=104.12 Aligned_cols=219 Identities=17% Similarity=0.184 Sum_probs=134.6
Q ss_pred hhcccceeEEEeec---CccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHh-Hh-----CCCcEEEec
Q 019931 103 TFARQFKRLLLFSG---NDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLAD-LK-----KKEDCLLCP 172 (334)
Q Consensus 103 ~~~~~g~~~l~f~s---n~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~-~~-----g~e~alv~~ 172 (334)
..|.+|+.+||.-+ .-.||. +||++.+++++-. ...--+|...|+.+. .++.+.|.+ ++ |..++...-
T Consensus 70 lvDvDGN~lLDvYsQIsSvplGY-n~P~LvK~a~~p~~~~~lvnRPALg~fP~-kd~~~~l~~~ll~~APKG~~~v~tm~ 147 (484)
T KOG1405|consen 70 LVDVDGNRLLDVYSQISSVPLGY-NNPALVKAAQQPQNATMLVNRPALGNFPP-KDFAEKLRQSLLSIAPKGQKQVITML 147 (484)
T ss_pred EEecCCCeeehhhhhhcccccCC-CCHHHHHHhcChHHHHHHhccccccCCCh-hhHHHHHHHHHHhhCcchHHHHHHHh
Confidence 35788999999644 345777 5899888775421 112234556666555 344444444 22 345566778
Q ss_pred cHHHHHHHHHHHHhh------hh----------hhccCCCccCCCCCeEEE-EcCCCchhhHHHHHHhhhcC----C---
Q 019931 173 TGFAANMAVIVAVGN------IA----------SLLAGDEKSFKDEKIAIF-SDALNHASIIDGIRIAERTK----M--- 228 (334)
Q Consensus 173 sG~~An~~ai~al~~------~~----------~~~~~~~~~~~~~gd~Vl-~d~~~H~s~~~g~~ls~~~~----g--- 228 (334)
+|+.||..++++..- +| +.+- ++.|. -++-.|+ .....|+.+...+.....+. +
T Consensus 148 cGs~aNEnA~K~afiwy~~k~rg~~~~s~~e~eScm~-n~aPg-~P~lsvlsF~gaFHGR~~g~lstT~SKpIHKldiPa 225 (484)
T KOG1405|consen 148 CGSCANENAYKTAFIWYRAKERGQAGFSAEELESCMI-NQAPG-APDLSVLSFKGAFHGRTFGSLSTTHSKPIHKLDIPA 225 (484)
T ss_pred ccccccHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHh-cCCCC-CCceeeeeeccccccccccccccccCccccccCCCC
Confidence 999999999987521 00 0000 00010 0223344 34556765543332221110 0
Q ss_pred -----cEE--EEeeC------C------CHHHHHHHHhcCC---CCcEEEEEcCCCCCCCCcc----CHHHHHHHHHHcC
Q 019931 229 -----VEV--FVYKH------C------DMSHLKTLLSCCT---MRKKVVVTDSLFSMDGDFA----PMVELVKLRRKYG 282 (334)
Q Consensus 229 -----~~v--~~~~~------~------D~~~Le~~l~~~~---~~~~lVv~e~v~n~~G~~~----pL~~L~ela~k~g 282 (334)
+.+ ..||. | .++++|++|.+.. .....|++|++.+..|+-- -+.+|+++++|||
T Consensus 226 FdWPiA~fP~ykYPLdenv~~N~ked~~Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~ 305 (484)
T KOG1405|consen 226 FDWPIAPFPRYKYPLDENVAENKKEDQGCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHG 305 (484)
T ss_pred CCCCCCCCccccCChhhhhhhhhhhhhhHHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcC
Confidence 011 11221 1 3678888887653 2456899999999988742 2889999999999
Q ss_pred CEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccccCCccE
Q 019931 283 FLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAGCQGGF 330 (334)
Q Consensus 283 a~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G~~GG~ 330 (334)
+.+||||+|..| |.+|.-.+ +|+++.+..|++ ||||-|=. |||
T Consensus 306 v~fivDEVQTGg--GaTGk~WaHehw~l~~PpD~v--TFSKK~q~-gGf 349 (484)
T KOG1405|consen 306 VAFIVDEVQTGG--GATGKFWAHEHWNLDSPPDVV--TFSKKFQT-GGF 349 (484)
T ss_pred eEEEeeeeecCC--CccCceeeehhcCCCCCccce--ehhhhhhc-Ccc
Confidence 999999999963 77887655 789998777866 99999853 444
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.8e-08 Score=92.39 Aligned_cols=200 Identities=20% Similarity=0.182 Sum_probs=133.7
Q ss_pred eeEEEeec---CccCCCC-CCHHHHHHHHHhcCCCCc---cccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHH
Q 019931 109 KRLLLFSG---NDYLGLS-SHPTIAKAAARHGMGPRG---SALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAV 181 (334)
Q Consensus 109 ~~~l~f~s---n~yLgl~-~~p~v~~a~~~~g~g~~~---sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~a 181 (334)
++++|.++ +-.||-+ -+|++++++.+.....-. ++-......-...+.+.++...+++.+++++..+.|...+
T Consensus 20 ~~viN~~G~v~~t~lG~s~~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~~aea~~ivnnn~aAVll~ 99 (395)
T COG1921 20 RRVINAIGTVLMTNLGRSLYSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLTGAEAAAIVNNNAAAVLLT 99 (395)
T ss_pred hhhhhhhhhheeccCCCccCCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhcccchhheeeECCcHHHHHHH
Confidence 66777766 2356766 478888865432221110 1111111222246777888888899999999999999988
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcC----CCchhhHHHHHHhhhcCCcEEEEeeCC---CHHHHHHHHhcCCCCcE
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDA----LNHASIIDGIRIAERTKMVEVFVYKHC---DMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~----~~H~s~~~g~~ls~~~~g~~v~~~~~~---D~~~Le~~l~~~~~~~~ 254 (334)
+.++..+ +.+|++-. ..|+++.+.++++ |++++.+... ...+++..+.+ +++
T Consensus 100 ~~al~~~--------------~EvVis~g~lV~gg~~~v~d~~~~a----G~~l~EvG~tn~t~~~d~~~AIne---~ta 158 (395)
T COG1921 100 LNALAEG--------------KEVVVSRGELVEGGAFRVPDIIRLA----GAKLVEVGTTNRTHLKDYELAINE---NTA 158 (395)
T ss_pred HhhhccC--------------CeEEEEccccccCCCCChhHHHHHc----CCEEEEecccCcCCHHHHHHHhcc---CCe
Confidence 8877653 45555421 4788899999999 8998887643 67788888876 555
Q ss_pred EE--EEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc-CCccEE
Q 019931 255 VV--VTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG-CQGGFI 331 (334)
Q Consensus 255 lV--v~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G-~~GG~i 331 (334)
++ +..+-|.+++ ..++++++++|+++|+.+++|.+-+.-+= + -...- .-+..++|+|+.|-.|.|| +++|+|
T Consensus 159 ~llkV~s~~~~f~~-~l~~~~l~~ia~~~~lpvivD~aSg~~v~-~-e~~l~--~~la~GaDLV~~SgdKllgGPqaGii 233 (395)
T COG1921 159 LLLKVHSSNYGFTG-MLSEEELVEIAHEKGLPVIVDLASGALVD-K-EPDLR--EALALGADLVSFSGDKLLGGPQAGII 233 (395)
T ss_pred eEEEEeeccccccc-cccHHHHHHHHHHcCCCEEEecCCccccc-c-ccchh--HHHhcCCCEEEEecchhcCCCccceE
Confidence 44 3333333334 44788899999999999999998765321 1 11111 1123568999999999995 589999
Q ss_pred eeC
Q 019931 332 ACR 334 (334)
Q Consensus 332 ~~~ 334 (334)
+|+
T Consensus 234 ~Gk 236 (395)
T COG1921 234 VGK 236 (395)
T ss_pred ech
Confidence 984
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.3e-08 Score=96.17 Aligned_cols=175 Identities=14% Similarity=0.049 Sum_probs=109.9
Q ss_pred CCHHHHHHHHHh-----cCCCCccccccCc---hHHHHHHHHHHHhHhCC-C--cEEEe-ccHHHHHHHHHHHHhhhhhh
Q 019931 124 SHPTIAKAAARH-----GMGPRGSALICGY---TNYHRLLESCLADLKKK-E--DCLLC-PTGFAANMAVIVAVGNIASL 191 (334)
Q Consensus 124 ~~p~v~~a~~~~-----g~g~~~sr~~~G~---~~~~~~LE~~La~~~g~-e--~alv~-~sG~~An~~ai~al~~~~~~ 191 (334)
.+++|++|+.++ ..|.+......-. ....+++.++|+++++. + .++++ +||+.|+.+++..+..++
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~~g-- 91 (360)
T PRK05355 14 LPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLGGG-- 91 (360)
T ss_pred CCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCCCC--
Confidence 478899987654 1222211111111 26778999999999995 2 35555 788999999998887642
Q ss_pred ccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcE-EEEee--C--CCHHHHHH-HHhcCCCCcEEEEEcCCCCCC
Q 019931 192 LAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVE-VFVYK--H--CDMSHLKT-LLSCCTMRKKVVVTDSLFSMD 265 (334)
Q Consensus 192 ~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~-v~~~~--~--~D~~~Le~-~l~~~~~~~~lVv~e~v~n~~ 265 (334)
++.++|......|.. ...+++. |.. +...+ . .+..++++ .+++ ++++|.+.+.-+.+
T Consensus 92 ---------~~~l~i~~G~fg~r~----~~~a~~~-g~~~~~~~~~~~g~~~~~~~~~~~l~~---~~~~V~~th~eTst 154 (360)
T PRK05355 92 ---------KKADYVDTGSWSKKA----IKEAKKY-GEVNVAASSEDDGFTYIPPLDEWQLSD---DAAYVHYTSNETID 154 (360)
T ss_pred ---------CeEEEEECCHHHHHH----HHHHHHh-CCceEEecccccCCCCCCChhhccCCC---CCCEEEEccCCCcc
Confidence 124455444444433 2233221 333 22222 1 23344444 5543 67888888888889
Q ss_pred CCcc-CHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc-cEEee
Q 019931 266 GDFA-PMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG-GFIAC 333 (334)
Q Consensus 266 G~~~-pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G-G~i~~ 333 (334)
|... |+++| +|++++||.++++|.. ...+. +.|+++.|-.|.||+.| |++..
T Consensus 155 Gv~~~~i~~i------~g~l~vVDavss~g~~---------~idv~-~~d~~~~ssqK~lgP~Glg~l~~ 208 (360)
T PRK05355 155 GTEFHELPDT------GDVPLVADMSSDILSR---------PIDVS-KFGLIYAGAQKNIGPAGLTIVIV 208 (360)
T ss_pred eEecCccccc------CCCcEEEEcCccccCc---------cCCHH-HccEEEEeccccccCCceEEEEE
Confidence 9997 67766 8999999999998632 12222 34799999999999887 66654
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.7e-08 Score=94.74 Aligned_cols=150 Identities=15% Similarity=0.029 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhHhCCC---cEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh
Q 019931 150 NYHRLLESCLADLKKKE---DCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER 225 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~e---~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~ 225 (334)
..++++++.|+++++.+ .++++ .||+.|+.+++..+..++ ++.++|......|.. ...+++
T Consensus 37 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~-----------~~~l~i~~G~fg~r~----~~~a~~ 101 (349)
T TIGR01364 37 AVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEG-----------KVADYIVTGAWSKKA----AKEAKK 101 (349)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCC-----------CeEEEEECCHHHHHH----HHHHHH
Confidence 56788999999999952 36666 559999999999887541 112333333333322 223322
Q ss_pred cCCcEEEEee------CCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCC
Q 019931 226 TKMVEVFVYK------HCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKN 299 (334)
Q Consensus 226 ~~g~~v~~~~------~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~ 299 (334)
.|. +..+. ..+..+++..... +++++|.+.+.-+.+|...| ++++.++++++||.++++|..
T Consensus 102 -~g~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~--- 169 (349)
T TIGR01364 102 -YGV-VNVVASGKEGNYTKIPDPSTWEIS--EDAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILSR--- 169 (349)
T ss_pred -hCC-cEEEeccccCCCCCCCCHHhcCCC--CCCCEEEEcCCCCcccEecc-----eecccCCCeEEEEccccccCc---
Confidence 145 33333 3344445533222 36788888888888998766 677788999999999998632
Q ss_pred CcccccccCCCCCccEEEecCcccccCCc-cEEee
Q 019931 300 GGGVAEQFNCERDVDICVGTLSKAAGCQG-GFIAC 333 (334)
Q Consensus 300 G~g~~~~~~~~~~~Div~~SlsKa~G~~G-G~i~~ 333 (334)
...+ .+.|+++.|..|+||+.| |++..
T Consensus 170 ------~id~-~~~d~~~~ssqK~lgP~Glg~l~~ 197 (349)
T TIGR01364 170 ------PIDV-SKFGLIYAGAQKNIGPAGLTVVIV 197 (349)
T ss_pred ------cCCH-HHccEEEEecccccCCCceEEEEE
Confidence 1222 235799999999999887 66654
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-07 Score=95.29 Aligned_cols=181 Identities=18% Similarity=0.123 Sum_probs=107.7
Q ss_pred EEeecC-ccCCCCCCHHHHHH------HHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCc--EEEeccHHHHHHHHH
Q 019931 112 LLFSGN-DYLGLSSHPTIAKA------AARHGMGPRGSALICGYTNYHRLLESCLADLKKKED--CLLCPTGFAANMAVI 182 (334)
Q Consensus 112 l~f~sn-~yLgl~~~p~v~~a------~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~--alv~~sG~~An~~ai 182 (334)
+.|.+. .|+|....|-..-+ +.-|...........+.+.+-+++-+.|++++|.+. ..++++|++||..++
T Consensus 78 v~~~~P~ry~ghm~~~~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL 157 (608)
T TIGR03811 78 VPWHSAGRYWGHMNSETLMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGL 157 (608)
T ss_pred CCCCCccceEEECcCCCCHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHH
Confidence 355665 78887754332221 222333222222222233444556666777778653 578899999999988
Q ss_pred HHHhhhhhh---ccCCC---------------------------------------cc--CCCCCeEEEEcCCCchhhHH
Q 019931 183 VAVGNIASL---LAGDE---------------------------------------KS--FKDEKIAIFSDALNHASIID 218 (334)
Q Consensus 183 ~al~~~~~~---~~~~~---------------------------------------~~--~~~~gd~Vl~d~~~H~s~~~ 218 (334)
-+....-.+ +.... .+ ...+--.|++....|.|+..
T Consensus 158 ~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~K 237 (608)
T TIGR03811 158 WYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLK 237 (608)
T ss_pred HHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHH
Confidence 764431000 00000 00 00001158888889999999
Q ss_pred HHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCC--C-CcEEEEEcCCCCCCCCccCHHHHHHHH---HHcCC--EE
Q 019931 219 GIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCT--M-RKKVVVTDSLFSMDGDFAPMVELVKLR---RKYGF--LL 285 (334)
Q Consensus 219 g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~--~-~~~lVv~e~v~n~~G~~~pL~~L~ela---~k~ga--~L 285 (334)
++.+...+ ...++.++. .|+++|++.|+++. . .+.+||...-.-..|.+-||++|.++| +++|+ ||
T Consensus 238 Aa~ilGlG-~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~l 316 (608)
T TIGR03811 238 AADIIGIG-LDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYL 316 (608)
T ss_pred HHHHcCCC-cccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeE
Confidence 99887321 114566653 38999999997541 1 233343333333579999999999999 67897 69
Q ss_pred EEecCccc
Q 019931 286 VLDDAHGT 293 (334)
Q Consensus 286 ivDeAh~~ 293 (334)
+||.|++.
T Consensus 317 HVDAAyGG 324 (608)
T TIGR03811 317 HVDAAYGG 324 (608)
T ss_pred eeeccccc
Confidence 99999995
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3e-07 Score=86.36 Aligned_cols=194 Identities=18% Similarity=0.147 Sum_probs=121.0
Q ss_pred eEEEeecCccCCCCCCHHHHH----HHHHhcCCCCcccc--ccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHH
Q 019931 110 RLLLFSGNDYLGLSSHPTIAK----AAARHGMGPRGSAL--ICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAV 181 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~v~~----a~~~~g~g~~~sr~--~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~a 181 (334)
.+|-+++|. ||...+....+ ++.+|+.+.-.+-. -..-..+-+.|-.+|+-+.|+. +++++.|-+.-+.-+
T Consensus 31 ~viyLdgnS-LGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~dtts~nl~k~ 109 (407)
T COG3844 31 GVIYLDGNS-LGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTDTTSINLFKV 109 (407)
T ss_pred CeEEeeccc-cccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeCCcchHHHHH
Confidence 445566776 88854322222 55677765322111 1111244567888999999963 355554444333334
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHH-HHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcC
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGI-RIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDS 260 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~-~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~ 260 (334)
+.+..++ +.+..+|+++..+.++-.... -++... +......-...+.++++++.. .+.+|++.+
T Consensus 110 L~aalr~-----------~~~r~vIv~E~~~fpTdly~a~g~~~~~-~~~~~~~~~~~P~~~~~~~~d---d~AvV~L~~ 174 (407)
T COG3844 110 LAAALRP-----------QEGRRVIVSEGDNFPTDLYIAEGLADLL-GIGYDLEGVIAPRALEEAITD---DVAVVLLSH 174 (407)
T ss_pred HHHHhcc-----------CCCceEEeecCCCCCcchhhhcchhhhh-cccccceeeeChHHHHHhhcc---ceEEEEecc
Confidence 5444443 113456777776666521111 111100 111111122467788888875 789999999
Q ss_pred CCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCccccc-CCc
Q 019931 261 LFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAAG-CQG 328 (334)
Q Consensus 261 v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~G-~~G 328 (334)
|.--+|..-++.+|.++++++|++++.|=||+.|.+.- .+ ..++|+-++|-.|.++ +.|
T Consensus 175 V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~---------~Lh~~gaDfaigcsyKYLNgGPG 235 (407)
T COG3844 175 VNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPV---------DLHAAGADFAIGCSYKYLNGGPG 235 (407)
T ss_pred ccccccceeeHHHHHHHHHhcCceEEeehhcccCCcce---------eecccCCCeeeeeeceeccCCCC
Confidence 99999999999999999999999999999999987521 11 2568999999999994 345
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.1e-09 Score=101.09 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=36.2
Q ss_pred HHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcC-CC----chhhHHHHHHhhhcC
Q 019931 153 RLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDA-LN----HASIIDGIRIAERTK 227 (334)
Q Consensus 153 ~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~-~~----H~s~~~g~~ls~~~~ 227 (334)
..+++.++++.|+|++++.++..+|.+.++.+++.. .++|++.. +. ...+.+-++.+
T Consensus 50 ~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la~~--------------~EvIvsRGelVeiGgsFRip~vm~~s---- 111 (367)
T PF03841_consen 50 AHVEELLCELTGAEAALVVNNNAAAVLLALNTLAKG--------------KEVIVSRGELVEIGGSFRIPDVMRQS---- 111 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccc--------------cccccccccccccccccccccccccc----
Confidence 458889999999999999999999999999887652 33444321 11 11244555555
Q ss_pred CcEEEEeeCC---CHHHHHHHHhcCCCCcEEEEEcC--CCCCCC--CccCHHHHHHHHHHcCCEEEEecCccccc----c
Q 019931 228 MVEVFVYKHC---DMSHLKTLLSCCTMRKKVVVTDS--LFSMDG--DFAPMVELVKLRRKYGFLLVLDDAHGTFV----C 296 (334)
Q Consensus 228 g~~v~~~~~~---D~~~Le~~l~~~~~~~~lVv~e~--v~n~~G--~~~pL~~L~ela~k~ga~LivDeAh~~Gv----~ 296 (334)
|++++.+... .+.+.|+.+.+ +|.+|+--+ -|.+.| ...+++++++++++|++.+|+|-.-+..+ +
T Consensus 112 Ga~lvEVGttN~t~~~Dye~AI~e---~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~ 188 (367)
T PF03841_consen 112 GARLVEVGTTNRTHLSDYEKAITE---NTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPY 188 (367)
T ss_dssp ----------------------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT
T ss_pred cccccccccccccccccccccccc---cccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccc
Confidence 7887777654 45667777765 777765443 333444 34679999999999999999998653211 1
Q ss_pred cCCCcccccccCCCCCccEEEecCcccccC-CccEEeeC
Q 019931 297 GKNGGGVAEQFNCERDVDICVGTLSKAAGC-QGGFIACR 334 (334)
Q Consensus 297 G~~G~g~~~~~~~~~~~Div~~SlsKa~G~-~GG~i~~~ 334 (334)
|-....... .-+..++|++++|-.|.+|+ +.|+|+|+
T Consensus 189 gl~~Ep~v~-~~~~~GaDlV~fSGdKlLGGPQaGiI~Gk 226 (367)
T PF03841_consen 189 GLPDEPTVQ-EYLAAGADLVTFSGDKLLGGPQAGIIVGK 226 (367)
T ss_dssp -----------CCCCT-SEEEEETTSSSSS-S-EEEEEE
T ss_pred cCccccHHH-HHhhcCCCEEEEECCCcCCCCCeEEEEeC
Confidence 111111111 11346789999999999965 78999874
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-07 Score=99.52 Aligned_cols=195 Identities=19% Similarity=0.158 Sum_probs=124.1
Q ss_pred EEEeecCccCCCCCCHHHHHHHHH---hcCCC--CccccccCchHHHHHHHHHHHhHhCCCc--EEEeccHHHHHHHHHH
Q 019931 111 LLLFSGNDYLGLSSHPTIAKAAAR---HGMGP--RGSALICGYTNYHRLLESCLADLKKKED--CLLCPTGFAANMAVIV 183 (334)
Q Consensus 111 ~l~f~sn~yLgl~~~p~v~~a~~~---~g~g~--~~sr~~~G~~~~~~~LE~~La~~~g~e~--alv~~sG~~An~~ai~ 183 (334)
+.+|.+..|.+.-.++.|.+.+.+ |=+.. -..-...|..+...++.+.++++.|.+. +-++.+++++..+++.
T Consensus 77 ~~~~ig~G~y~~~~P~vi~~~i~~~~~~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~ 156 (954)
T PRK05367 77 FRSYIGQGYYGTHTPPVILRNILENPAWYTAYTPYQPEISQGRLEALLNFQTMVADLTGLEIANASLLDEATAAAEAMAL 156 (954)
T ss_pred CCcccCCCCCCCcCcHHHHHHHHhCcchhhccCCCChHHHHHHHHHHHHHHHHHHHHHCCChhhccccccHHHHHHHHHH
Confidence 345666666666444444343322 11111 1111245666777889999999999874 4666777777777776
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCC
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFS 263 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n 263 (334)
++.-. .++++.|+++...|++....++......|.+++.++..+ +++ . .++..+++.. .|
T Consensus 157 a~~~~-----------~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~--d~~----~--~~~~~vlvq~-p~ 216 (954)
T PRK05367 157 AKRVS-----------KSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK--ALD----H--DDVFGVLLQY-PG 216 (954)
T ss_pred hhhhc-----------cCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc--CCC----c--ccEEEEEEec-CC
Confidence 55321 012478988899999987766543233488888887643 111 1 2454555444 46
Q ss_pred CCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccc-----ccCCc-cEEee
Q 019931 264 MDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKA-----AGCQG-GFIAC 333 (334)
Q Consensus 264 ~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa-----~G~~G-G~i~~ 333 (334)
.+|.+.|+++|.++|+++|+++++|..+..+.+... .-.-++||++++..|- ||+.| ||+++
T Consensus 217 ~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~--------pge~GaDi~vgs~qkfg~P~g~GGP~aGflav 284 (954)
T PRK05367 217 TSGEVRDYTALIAAAHARGALVAVAADLLALTLLTP--------PGEMGADIAVGSAQRFGVPMGFGGPHAAYFAV 284 (954)
T ss_pred CCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCC--------hhhcCCCEEEeeCcccCCCCCCCCCCEEEEEE
Confidence 689999999999999999999999987743322211 1124689999999996 55443 77765
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.9e-07 Score=96.96 Aligned_cols=198 Identities=20% Similarity=0.164 Sum_probs=127.8
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhc---CCCCcc--ccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHG---MGPRGS--ALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAV 181 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g---~g~~~s--r~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~a 181 (334)
+.+.||.+..|.++-.++.|.+++.+.. ...+.+ -...|......++...++++.|.+ .+-++.+++++..++
T Consensus 102 ~~~~~fiG~G~y~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~ 181 (993)
T PLN02414 102 KVFKSYIGMGYYNTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAM 181 (993)
T ss_pred CccccccCCCCCCccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHH
Confidence 4466777777777766666656554321 111111 222555666788999999999975 466777777777777
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCC
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSL 261 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v 261 (334)
+.++.-. .++++.|+++...|++....++-.....|.+++.++..+.+ ... .....+++ +.
T Consensus 182 ~~a~~~~-----------~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~~----~~~---~~v~~vlv-q~ 242 (993)
T PLN02414 182 AMCNNIL-----------KGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDFD----YSS---GDVCGVLV-QY 242 (993)
T ss_pred HHHHhcc-----------cCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhhc----ccc---CceEEEEE-ec
Confidence 6654311 12357788888899987777654323347888888754322 111 12333443 34
Q ss_pred CCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc------cEEee
Q 019931 262 FSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG------GFIAC 333 (334)
Q Consensus 262 ~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G------G~i~~ 333 (334)
.|.+|.+.|+++|.++|+++|+++++ .++..+..+- .. .-.-++||++++..|-.++.| ||+++
T Consensus 243 P~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l------~~-pge~GADi~vgsgqKwg~P~G~GGP~aGflav 312 (993)
T PLN02414 243 PATDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTML------KP-PGEWGADIVVGSAQRFGVPMGYGGPHAAFLAT 312 (993)
T ss_pred CCCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCC------CC-HhhccCcEEEECCCccccCCCCCCCCeeEEEE
Confidence 45689999999999999999999999 7777653321 00 112468999999999875555 77765
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.7e-07 Score=83.15 Aligned_cols=173 Identities=17% Similarity=0.109 Sum_probs=113.5
Q ss_pred CHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCC
Q 019931 125 HPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKD 201 (334)
Q Consensus 125 ~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~ 201 (334)
+++|++|+..-..|...... ..+.+++.+-+...|... ..+++ .||..+..+++.-++.|
T Consensus 29 ~~~V~~A~~~~~lgh~sPe~----~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~leP------------- 91 (385)
T KOG2862|consen 29 SGRVQEAMSRPSLGHMSPEF----VQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLEP------------- 91 (385)
T ss_pred CHHHHHhhcCCccccCCHHH----HHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcCC-------------
Confidence 46666666544444322111 134456666666666643 33444 78888988888877765
Q ss_pred CCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC-HHHHH
Q 019931 202 EKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP-MVELV 275 (334)
Q Consensus 202 ~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p-L~~L~ 275 (334)
||.|++-...-.+.. ++... +..|+++..++. -.++.+++.|.++ ++++|++.+.-+.+|...| ++.+-
T Consensus 92 -gd~vLv~~~G~wg~r-a~D~~-~r~ga~V~~v~~~~G~~~~le~i~~~lsqh--~p~~vfv~hgdsSTgV~q~~~~~~g 166 (385)
T KOG2862|consen 92 -GDNVLVVSTGTWGQR-AADCA-RRYGAEVDVVEADIGQAVPLEEITEKLSQH--KPKAVFVTHGDSSTGVLQDLLAISG 166 (385)
T ss_pred -CCeEEEEEechHHHH-HHHHH-HhhCceeeEEecCcccCccHHHHHHHHHhc--CCceEEEEecCccccccchHHHHHH
Confidence 666665433322211 11122 223788877753 3789999999874 6788888888888999999 67788
Q ss_pred HHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCC
Q 019931 276 KLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQ 327 (334)
Q Consensus 276 ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~ 327 (334)
++|++|+++|+||.+-+.| |.-+. + -+.++|+...---|++|..
T Consensus 167 ~lc~k~~~lllVD~VaSlg-----gt~F~--m-DewgVDvaytgSQKaL~aP 210 (385)
T KOG2862|consen 167 ELCHKHEALLLVDTVASLG-----GTEFE--M-DEWGVDVAYTGSQKALGAP 210 (385)
T ss_pred HHhhcCCeEEEEechhhcC-----Cccce--e-hhhcccEEEecchhhcCCC
Confidence 9999999999999998865 22221 1 1356788887788999864
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=8e-07 Score=86.20 Aligned_cols=150 Identities=18% Similarity=0.179 Sum_probs=107.8
Q ss_pred cEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC----CHHHH
Q 019931 167 DCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC----DMSHL 242 (334)
Q Consensus 167 ~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~----D~~~L 242 (334)
+.+++++.+.+..-+++.+++. +|.|+++...+.+.+..++.. |+++++++.+ +++.|
T Consensus 126 diiit~G~t~~l~~~l~~~~N~--------------gd~vlie~~ty~~AL~s~~a~----gv~~ipv~md~~Gi~pE~l 187 (472)
T KOG0634|consen 126 DIIITNGNTDGLFKVLRTLINR--------------GDHVLIEEYTYPSALQSMEAL----GVKIIPVKMDQDGIDPESL 187 (472)
T ss_pred eEEEecCCchHHHHHHHHhhcC--------------CCceEEecccchHHHHhcccc----CceEEeccccCCCCCHHHH
Confidence 3566666688999999998875 899999999888887777766 8888888754 89999
Q ss_pred HHHHhcCC------CCcEEE-EEcCCCCCCCCccCH---HHHHHHHHHcCCEEEEecCcccccccC-CCc----------
Q 019931 243 KTLLSCCT------MRKKVV-VTDSLFSMDGDFAPM---VELVKLRRKYGFLLVLDDAHGTFVCGK-NGG---------- 301 (334)
Q Consensus 243 e~~l~~~~------~~~~lV-v~e~v~n~~G~~~pL---~~L~ela~k~ga~LivDeAh~~Gv~G~-~G~---------- 301 (334)
++.+..-+ ++++++ -+-+-.||+|...++ ++|.+||+||++++|.||.|.+.-++. ++.
T Consensus 188 ~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~ 267 (472)
T KOG0634|consen 188 EEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSS 267 (472)
T ss_pred HHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccH
Confidence 99987532 235554 456667899988875 479999999999999999998764441 000
Q ss_pred -ccc-----cccCCC-CCccEEEecCcccccC--CccEEeeC
Q 019931 302 -GVA-----EQFNCE-RDVDICVGTLSKAAGC--QGGFIACR 334 (334)
Q Consensus 302 -g~~-----~~~~~~-~~~Div~~SlsKa~G~--~GG~i~~~ 334 (334)
-+. ...++. .+..|-+.||||-+++ .=||+.++
T Consensus 268 ~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~ 309 (472)
T KOG0634|consen 268 SMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGN 309 (472)
T ss_pred HHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecC
Confidence 000 001111 2223788999999964 34888764
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-06 Score=85.16 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=117.6
Q ss_pred cccCchHHHHHHHHHHHhHhCCCcEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHH
Q 019931 144 LICGYTNYHRLLESCLADLKKKEDCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRI 222 (334)
Q Consensus 144 ~~~G~~~~~~~LE~~La~~~g~e~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~l 222 (334)
.+.|+..+..+|++.|++..|.+.+-+. ++|++.=.+-+.++..- .-..++ +..++|++....|+.-.....+
T Consensus 103 ~vqG~l~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~Y--He~rG~----~~R~~~LIP~SAHGTNPASAam 176 (496)
T COG1003 103 QVQGYLELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAY--HESRGE----GHRNICLIPDSAHGTNPASAAM 176 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHH--HHHcCC----CcCcEEEeeccccCCChhhHhh
Confidence 3567788889999999999999988777 67766444333332210 000111 1357888899999988777777
Q ss_pred hhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCc-cCHHHHHHHHHHcCCEEEEecCcccccc
Q 019931 223 AERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDF-APMVELVKLRRKYGFLLVLDDAHGTFVC 296 (334)
Q Consensus 223 s~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~-~pL~~L~ela~k~ga~LivDeAh~~Gv~ 296 (334)
. |.+++.++.+ |+++|++++.+ ++..+.+..++ -.|.. .++.+|+++.+++|..|+.|.|.-=.++
T Consensus 177 ~----G~~VV~V~~~~~G~VDlddLk~k~~~---~~AalMiTnPs-T~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~v 248 (496)
T COG1003 177 A----GFKVVVVKCDENGNVDLDDLRAKAED---NLAALMITNPS-TLGVFEEDIREICEIVHEAGGQVYYDGANLNAIV 248 (496)
T ss_pred c----CceEEEEecCCCCCccHHHHHHHhcc---ceeEEEeccCc-ccccchhhHHHHHHHHHHcCCEEEecCcchhhhh
Confidence 7 8899998865 89999999985 77777766665 34655 4599999999999999999999876666
Q ss_pred cCCCcccccccCCCCCccEEEecCcccccC
Q 019931 297 GKNGGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 297 G~~G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
|..-.| .-+.||+-.-|+|+|..
T Consensus 249 G~~rPG-------d~G~DV~HlNLHKTF~i 271 (496)
T COG1003 249 GLARPG-------DMGFDVVHLNLHKTFCI 271 (496)
T ss_pred cccccc-------ccccceEEeeccccccc
Confidence 643222 12468888899999964
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.3e-06 Score=79.94 Aligned_cols=167 Identities=13% Similarity=0.074 Sum_probs=107.3
Q ss_pred HHHHHHHhHhCC---CcEEEeccHHHHHHHHHHHHhhhhhhccCCCc--cCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 154 LLESCLADLKKK---EDCLLCPTGFAANMAVIVAVGNIASLLAGDEK--SFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 154 ~LE~~La~~~g~---e~alv~~sG~~An~~ai~al~~~~~~~~~~~~--~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
++-.++.+..|- .+-++.++|+.+|+-++.+...+ .++.... -..-+.-++++.+-.|.|+..+......+ .
T Consensus 145 ~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk--~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~g-t 221 (510)
T KOG0629|consen 145 EVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYK--NFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLG-T 221 (510)
T ss_pred HHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhh--cCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccC-C
Confidence 444555555553 35799999999999988764332 1111000 00012456677888999999888776221 2
Q ss_pred cEEEEeeCC-----CHHHHHHHHhcCCCC---cEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCccccccc-CC
Q 019931 229 VEVFVYKHC-----DMSHLKTLLSCCTMR---KKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCG-KN 299 (334)
Q Consensus 229 ~~v~~~~~~-----D~~~Le~~l~~~~~~---~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G-~~ 299 (334)
..++.++.+ ++++||++|.+++.+ +.+|-...=.-..|.+-||+.|+++|++|++|+.||.|.+.|++- +.
T Consensus 222 d~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k 301 (510)
T KOG0629|consen 222 DHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRK 301 (510)
T ss_pred ceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChh
Confidence 455666654 899999999876432 344433333334688999999999999999999999999987653 22
Q ss_pred CcccccccCCCCCccEEEecCcccccC
Q 019931 300 GGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 300 G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
-+.. .-|++ .++-+.-+-+|.+|+
T Consensus 302 ~R~k--l~Gie-ra~SvtwnpHK~~ga 325 (510)
T KOG0629|consen 302 HRHK--LTGIE-RANSVTWNPHKLMGA 325 (510)
T ss_pred hHhh--ccCcc-ccCceeecHHHhhcC
Confidence 2211 12333 356677778888875
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-06 Score=80.18 Aligned_cols=151 Identities=19% Similarity=0.166 Sum_probs=96.4
Q ss_pred HHHHHHhHhC--CCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEE
Q 019931 155 LESCLADLKK--KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVF 232 (334)
Q Consensus 155 LE~~La~~~g--~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~ 232 (334)
+.-.++.-.+ .+..++-.+.-+.+..++++.+.|| .+.|+..++.+..+.-..... ++.++
T Consensus 74 ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c~PG-------------keKIl~cPPtysMY~v~A~iN----d~eVv 136 (375)
T KOG0633|consen 74 LSDALAQDKPLTSDNICVGVGSDELIDLIIRCVCDPG-------------KEKILDCPPTYSMYVVDAAIN----DAEVV 136 (375)
T ss_pred hhhhcccCCCCCccceEEecCcHHHHHHHHhheecCC-------------ccceeecCCcceeEEEEeecC----CceEE
Confidence 4444444344 2344444555677888888888762 355665555443322122233 67787
Q ss_pred EeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHc-CCEEEEecCcccccccCCCc-cccc
Q 019931 233 VYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKY-GFLLVLDDAHGTFVCGKNGG-GVAE 305 (334)
Q Consensus 233 ~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~-ga~LivDeAh~~Gv~G~~G~-g~~~ 305 (334)
.++.+ |.+++...++..+ ..|++++.++.||+|.+.-.+.|.++.+-. +.++++||||... .|..-+ .+..
T Consensus 137 kvpl~pdF~lnvdai~evl~~ds-~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidF-sg~~S~~~lV~ 214 (375)
T KOG0633|consen 137 KVPLNPDFSLNVDAIAEVLELDS-KIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDF-SGVESRMKLVK 214 (375)
T ss_pred EecCCCCccccHHHHHHHHhccc-cceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEee-ccccccchHhH
Confidence 77754 7788888887533 689999999999999998888777777653 6899999999752 221000 1111
Q ss_pred ccCCCCCccEEEecCcccccCCc
Q 019931 306 QFNCERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 306 ~~~~~~~~Div~~SlsKa~G~~G 328 (334)
.+ |+ =+++-||||+||..|
T Consensus 215 kY---pN-LivlqTlSKsfGLAG 233 (375)
T KOG0633|consen 215 KY---PN-LIVLQTLSKSFGLAG 233 (375)
T ss_pred hC---Cc-eeehhhhhhhcCcce
Confidence 11 23 277899999999877
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-05 Score=74.79 Aligned_cols=164 Identities=20% Similarity=0.245 Sum_probs=104.7
Q ss_pred cCchH-HHHHHHHHHHhHhCCCcEEEe---ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEE-EcCCCchhhHHHH
Q 019931 146 CGYTN-YHRLLESCLADLKKKEDCLLC---PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIF-SDALNHASIIDGI 220 (334)
Q Consensus 146 ~G~~~-~~~~LE~~La~~~g~e~alv~---~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl-~d~~~H~s~~~g~ 220 (334)
+|+.+ -.+.||+-.|+.+|+|.+++- -||+.|+..++..+++| ||..+ ....-+-.+.+-+
T Consensus 60 YGydD~GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LRp--------------gDell~i~G~PYDTLeevI 125 (416)
T COG4100 60 YGYDDLGRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILRP--------------GDELLYITGSPYDTLEEVI 125 (416)
T ss_pred CCccccchhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccCC--------------CCeEEEecCCcchhHHHHh
Confidence 34444 357799999999999998764 79999999999999887 45444 2222222232222
Q ss_pred HHhhh------cCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCC----CCCCccCHHHHHHHHHHc--CC
Q 019931 221 RIAER------TKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFS----MDGDFAPMVELVKLRRKY--GF 283 (334)
Q Consensus 221 ~ls~~------~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n----~~G~~~pL~~L~ela~k~--ga 283 (334)
-+... ..+.+..-++. -|.+.++..+++ +||+|.+.--.. |.-.++.++++.++.|+. ++
T Consensus 126 G~rg~~~gSL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~~---~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ 202 (416)
T COG4100 126 GLRGEGQGSLKDFGIKYKAVPLTADGKIDIQAVKTAISD---RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNV 202 (416)
T ss_pred ccCCCCcccHHHhCcceeecccccCCcccHHHHHHhcCc---cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCE
Confidence 11110 01233333332 288888888875 788887653211 112345577777777764 68
Q ss_pred EEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC----CccEEeeC
Q 019931 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC----QGGFIACR 334 (334)
Q Consensus 284 ~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~----~GG~i~~~ 334 (334)
+++||+.++-.+- +..+..-++|++.|||=|.-|+ .||||+|.
T Consensus 203 ivFVDNCYGEFvE--------~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk 249 (416)
T COG4100 203 IVFVDNCYGEFVE--------EKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGK 249 (416)
T ss_pred EEEEeccchhhhh--------ccCccccchhhhccceeeCCCCceeeccceeech
Confidence 9999999875321 1122334679999999999875 69999874
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-05 Score=78.88 Aligned_cols=163 Identities=20% Similarity=0.189 Sum_probs=100.9
Q ss_pred ccCchHHHHHHHHHHHhHhCCCcE--EEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHH
Q 019931 145 ICGYTNYHRLLESCLADLKKKEDC--LLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRI 222 (334)
Q Consensus 145 ~~G~~~~~~~LE~~La~~~g~e~a--lv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~l 222 (334)
..|.....-+++..++++.|.+-+ =++..++++-.+++++.... +++.+.|+.+...|+.....++-
T Consensus 105 sQG~Lq~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~-----------~~~~~~vlv~~~~hP~~~~v~~t 173 (429)
T PF02347_consen 105 SQGRLQALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRAT-----------KRKRNKVLVPESLHPQTRAVLRT 173 (429)
T ss_dssp BHHHHHHHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHH-----------TT---EEEEETTS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhc-----------ccCCcEEEEcCCcChhhHHHHHH
Confidence 567777888999999999999864 45566666666666554322 11245788888888887776654
Q ss_pred hhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcc
Q 019931 223 AERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG 302 (334)
Q Consensus 223 s~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g 302 (334)
.....+.+++.++..+..... ..++..|++..|+. .|.+.++++|.++++++|+++++ .+--.- + +
T Consensus 174 ~a~~~g~~iv~~~~~~~~~~d------~~~~a~v~vq~Pn~-~G~~ed~~~i~~~~h~~gal~~~-~ad~~a-L-----~ 239 (429)
T PF02347_consen 174 YAAPLGIEIVEVPLDEDGTTD------DDDTAAVMVQNPNT-FGVFEDIKEIADIAHAAGALVIV-GADPNA-L-----G 239 (429)
T ss_dssp HCCHCCEEEEEE-BBTTCSB-------STTEEEEEEESS-T-TSB--THHHHHHHHHHTT-EEEE-CGGCCG-C-----C
T ss_pred hhhhCCeEEEEecccccCCcc------ccCeEEEEeecCCC-CceEeeHHHHHHHHHHcCCEEEE-ecCHHH-H-----h
Confidence 323347888888754221111 24788898888874 69999999999999999999987 444322 1 1
Q ss_pred cccccCCCCCccEEEecCcccccC---Cc----cEEeeC
Q 019931 303 VAEQFNCERDVDICVGTLSKAAGC---QG----GFIACR 334 (334)
Q Consensus 303 ~~~~~~~~~~~Div~~SlsKa~G~---~G----G~i~~~ 334 (334)
.....+ .-++||+++. +|.||. .| |+++++
T Consensus 240 ~l~~Pg-e~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~ 276 (429)
T PF02347_consen 240 GLKSPG-EYGADIVVGE-HQTFGIPMGFGGPGAGFFAVR 276 (429)
T ss_dssp TC--GG-GGT-SEEEEC-CTTTT---CCC-S--EEEEE-
T ss_pred CcCChh-hcCccEEeeC-CCCCcccCCCCCCCeeeEEEh
Confidence 111111 2357999887 999986 23 677763
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-05 Score=77.56 Aligned_cols=154 Identities=16% Similarity=0.187 Sum_probs=94.8
Q ss_pred hHhCC---CcEEEeccHH-HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC
Q 019931 161 DLKKK---EDCLLCPTGF-AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH 236 (334)
Q Consensus 161 ~~~g~---e~alv~~sG~-~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~ 236 (334)
+..|. ..|++.+-.+ +++...+.++..+ .+.+.|+.++..|.|-...+..+ |.+++.++.
T Consensus 67 ~~~G~~~~~~~~~vP~atgm~l~l~l~~l~~r------------~~a~~Viw~ridqkSc~kai~~A----Gl~~~vV~~ 130 (389)
T PF05889_consen 67 RLAGLRSVKSCFVVPMATGMSLTLCLLALRMR------------PKAKYVIWPRIDQKSCFKAIERA----GLEPVVVEN 130 (389)
T ss_dssp HHTTHTTHCEEEEESS-HHHHHHHHHHHHHHH------------CT--EEEEEEEETHHHHHHHHHT----T-EEEEE-E
T ss_pred HHcCCccccceEEEecccccHHHHHHHHHhcc------------cCCceEEEeeccccchHHHHHhc----CCeEEEeec
Confidence 34563 4577774332 3455556666432 13688998999999988888777 777776653
Q ss_pred --------CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC-HHHHHHHHHHcCCEEEEecCcccccccCCCccccccc
Q 019931 237 --------CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP-MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 237 --------~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p-L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
.|.+.+|+++++......+.+..++....+..+| +++|.++|++||+..++-.||+.-.- ..-.-+-+.+
T Consensus 131 ~~~~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~-~~~~~i~~a~ 209 (389)
T PF05889_consen 131 VLEGDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSS-KCMHLIQQAW 209 (389)
T ss_dssp EEETTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-H-HHHHHHHHHH
T ss_pred cCCCCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHH-HHHHHHHHHH
Confidence 2788999999876556677777777777788888 99999999999999999999986210 0000000000
Q ss_pred CCCCCccEEEecCcccc-cCCccEEe
Q 019931 308 NCERDVDICVGTLSKAA-GCQGGFIA 332 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~-G~~GG~i~ 332 (334)
. ...+|+.+-|+.|-| =+.||-++
T Consensus 210 ~-~GRvda~vqS~dkNF~VPvGgai~ 234 (389)
T PF05889_consen 210 R-VGRVDAFVQSTDKNFMVPVGGAIM 234 (389)
T ss_dssp H-HSTCSEEEEEHHHHHCEESSHEEE
T ss_pred h-cCCcceeeeecCCCEEecCCCcEE
Confidence 0 124677888888888 33554443
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.4e-05 Score=74.23 Aligned_cols=175 Identities=13% Similarity=0.104 Sum_probs=108.1
Q ss_pred CccccccCchHHHHHHHHHHHhHhCC----CcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchh
Q 019931 140 RGSALICGYTNYHRLLESCLADLKKK----EDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHAS 215 (334)
Q Consensus 140 ~~sr~~~G~~~~~~~LE~~La~~~g~----e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s 215 (334)
+++.-..|..-+.+.+.+-|.+.-|. +++.++++.+.|...+++.+++. +.+=|++.-+-+..
T Consensus 107 GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~-------------~~~GvliPiPQYPL 173 (475)
T KOG0258|consen 107 GAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAG-------------KKTGVLIPIPQYPL 173 (475)
T ss_pred cccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcC-------------CCCceEeecCCCch
Confidence 33334444444445555555555552 34556666678888888877652 34556666555554
Q ss_pred hHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCC--CCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCC
Q 019931 216 IIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCT--MRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGF 283 (334)
Q Consensus 216 ~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~--~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga 283 (334)
+...+.+. +...+.|-. .|.++|++.+.+.. .+++++++=++-||+|.+.- +++|..+|.++|+
T Consensus 174 YsAti~l~----~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l 249 (475)
T KOG0258|consen 174 YSATISLL----GGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGL 249 (475)
T ss_pred hHHHHHHh----CCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCe
Confidence 44444444 455554432 38999999887653 24566666678899997654 8899999999999
Q ss_pred EEEEecCcccccccCCCcc-----cccccCC-CC-Ccc-EEEecCccccc----CCccEE
Q 019931 284 LLVLDDAHGTFVCGKNGGG-----VAEQFNC-ER-DVD-ICVGTLSKAAG----CQGGFI 331 (334)
Q Consensus 284 ~LivDeAh~~Gv~G~~G~g-----~~~~~~~-~~-~~D-iv~~SlsKa~G----~~GG~i 331 (334)
+|+.||+|.-.++-..-+. ++.+.+- .+ .+- +...|.||++- ..|||.
T Consensus 250 ~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYm 309 (475)
T KOG0258|consen 250 VLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYM 309 (475)
T ss_pred EEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCee
Confidence 9999999998887542111 1112221 12 221 34567799983 367874
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00017 Score=69.48 Aligned_cols=135 Identities=18% Similarity=0.188 Sum_probs=89.0
Q ss_pred EEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCC---CchhhHHHHHHhhhcCCcEEEEeeCC-------C
Q 019931 169 LLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDAL---NHASIIDGIRIAERTKMVEVFVYKHC-------D 238 (334)
Q Consensus 169 lv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~---~H~s~~~g~~ls~~~~g~~v~~~~~~-------D 238 (334)
+=+.+|+-|+-.+-.-+.+. .++..|....+ +|..+.. .+ |.++..|+.- |
T Consensus 98 ~Qt~GGTGAL~~~A~fl~~~------------~~~~~vwis~PtW~NH~~If~---~a----Gl~v~~Y~Yyd~~~~~~d 158 (396)
T COG1448 98 VQTLGGTGALRVAADFLARF------------FPDATVWISDPTWPNHKAIFE---AA----GLEVETYPYYDAETKGLD 158 (396)
T ss_pred eecCCcchHHHHHHHHHHHh------------CCCceEEeCCCCcHhHHHHHH---hc----CCceeeeecccccccccc
Confidence 34478888877776655543 12344554444 4544432 23 7788777742 6
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCC-----
Q 019931 239 MSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNC----- 309 (334)
Q Consensus 239 ~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~----- 309 (334)
.+.+-..|++.+.+..+++=.+.+||+|.-.. +++|.++.++.|.+-++|-||-. |+ .|+- +.+++
T Consensus 159 f~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQG--F~---~GleeDa~~lR~~a~ 233 (396)
T COG1448 159 FDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQG--FA---DGLEEDAYALRLFAE 233 (396)
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhh--hc---cchHHHHHHHHHHHH
Confidence 77777777766556677778889999995544 77899999999999999999873 43 2221 11111
Q ss_pred -CCCccEEEecCcccccCCc
Q 019931 310 -ERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 310 -~~~~Div~~SlsKa~G~~G 328 (334)
.+. -++..||||.||..|
T Consensus 234 ~~~~-~lva~S~SKnfgLYg 252 (396)
T COG1448 234 VGPE-LLVASSFSKNFGLYG 252 (396)
T ss_pred hCCc-EEEEehhhhhhhhhh
Confidence 233 388999999999843
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0001 Score=69.00 Aligned_cols=172 Identities=18% Similarity=0.093 Sum_probs=96.8
Q ss_pred CCccccccCchHHHHHHHHHHHhHhCC---CcEE-EeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEc-CCCc
Q 019931 139 PRGSALICGYTNYHRLLESCLADLKKK---EDCL-LCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSD-ALNH 213 (334)
Q Consensus 139 ~~~sr~~~G~~~~~~~LE~~La~~~g~---e~al-v~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d-~~~H 213 (334)
-+.+-.-.|...+.+.|.+-+.+-+|- ++-+ ++++..+|.+-++..+..+ ...|....|+.. .+.+
T Consensus 67 ~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~---------~sdG~~k~illPLaPeY 137 (417)
T COG3977 67 LCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGR---------RSDGTEKKILLPLAPEY 137 (417)
T ss_pred HhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCc---------cCCCcceeEeeccChhh
Confidence 344445667778888888888887772 3444 4444445555555443332 011122233332 2222
Q ss_pred hhhHHHHHHhhhcCCcEEEEee-------------CCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHH
Q 019931 214 ASIIDGIRIAERTKMVEVFVYK-------------HCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKL 277 (334)
Q Consensus 214 ~s~~~g~~ls~~~~g~~v~~~~-------------~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~el 277 (334)
-.+.+.. +. +.-++.++ |-|.++|+-. ..+.+|++.-+.||+|.+.- +.+|.+|
T Consensus 138 iGY~d~~-l~----~d~fVs~kP~iel~~~g~FKY~vDF~~l~i~-----e~~g~ic~SRPtNPTGNVlTdeE~~kldal 207 (417)
T COG3977 138 IGYADAG-LE----EDLFVSAKPNIELLPAGQFKYHVDFEHLHIG-----ESTGAICVSRPTNPTGNVLTDEELAKLDAL 207 (417)
T ss_pred ccccccc-cC----ccceeeccCCcccccccceeeccCHHHcccc-----cccceEEecCCCCCCCCcccHHHHHHHHHH
Confidence 2221111 11 11111121 3477766522 36889999999999998865 7778889
Q ss_pred HHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEee
Q 019931 278 RRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 278 a~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
|++||+.|++|.||+...= +-=+.+.-.+-.+.-|++.||||. |..| |.+++
T Consensus 208 A~~~giPliIDnAYg~PFP---~iifsd~~~~w~~NiilC~SLSK~-GLPG~R~GIiIa 262 (417)
T COG3977 208 ARQHGIPLIIDNAYGVPFP---GIIFSDATPLWNENIILCMSLSKL-GLPGSRCGIIIA 262 (417)
T ss_pred hhhcCCcEEEecccCCCCC---ceecccccccCCCCEEEEeehhhc-CCCCcceeEEEc
Confidence 9999999999999986521 111111111112234889999996 4444 66654
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00015 Score=78.02 Aligned_cols=194 Identities=17% Similarity=0.144 Sum_probs=121.6
Q ss_pred EEEeecCccCCCCCCHHHHHHHHH---hcCCCC--ccccccCchHHHHHHHHHHHhHhCCCc--EEEeccHHHHHHHHHH
Q 019931 111 LLLFSGNDYLGLSSHPTIAKAAAR---HGMGPR--GSALICGYTNYHRLLESCLADLKKKED--CLLCPTGFAANMAVIV 183 (334)
Q Consensus 111 ~l~f~sn~yLgl~~~p~v~~a~~~---~g~g~~--~sr~~~G~~~~~~~LE~~La~~~g~e~--alv~~sG~~An~~ai~ 183 (334)
+.+|.+..|.+.-.+|.|.+.+.+ |=+..+ ..-...|.....-++...++++.|.+- +-++..++++..++++
T Consensus 65 ~~~fig~G~y~~~~p~~i~r~v~~~p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~ 144 (939)
T TIGR00461 65 FKSYIGMGYYGTILPPVIQRNLLENPGWYTAYTPYQPEISQGRLEALLNFQTVVSDLTGLPVANASLLDEGTAAAEAMAL 144 (939)
T ss_pred ccccCCCCcCCCcCChHHHHHHHhCchhhhcCCCCChhhhhHHHHHHHHHHHHHHHHHCCChhhhhccchhhHHHHHHHH
Confidence 446767767776667777753322 112111 122345666777889999999999874 4677777777776666
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCC
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFS 263 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n 263 (334)
+.... +++.+.|+++...|+.....++-.....|.+++.+ |+++|++.+ ++..|++..++
T Consensus 145 a~~~~-----------~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~---~~~~l~~~~-----~~~~v~~q~Pn- 204 (939)
T TIGR00461 145 SFNVS-----------KKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVV---DCSDIKKAV-----DVFGCLLQYPA- 204 (939)
T ss_pred HHHhh-----------cCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEE---cHHHHhhcC-----CEEEEEEECCC-
Confidence 53211 11246788888899887766652212237777776 455555544 35666666554
Q ss_pred CCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC-------CccEEee
Q 019931 264 MDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC-------QGGFIAC 333 (334)
Q Consensus 264 ~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~-------~GG~i~~ 333 (334)
..|.+.|+++|.++++++|++++++.-...+.+ ... +-+-++||+++ .+|.||. ..||+++
T Consensus 205 ~~G~ied~~~i~~~~h~~gal~~~~ad~~al~l-------l~~-Pge~GaDi~vg-~~q~fg~p~g~GGP~aG~~a~ 272 (939)
T TIGR00461 205 TDGSILDYKQLIDALHSHKSLVSVAADLMALTL-------LTP-PGHYGADIVLG-SSQRFGVPMGYGGPHAAFFAV 272 (939)
T ss_pred CCeEEecHHHHHHHHHHcCCEEEEEechHHhCC-------cCC-HHHcCCcEEee-CCCccCCCCCCCCCceeeeee
Confidence 469999999999999999999999654332211 111 11235799965 6676664 2267765
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00019 Score=69.95 Aligned_cols=189 Identities=17% Similarity=0.136 Sum_probs=127.1
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHH---hcCCCC--ccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAAR---HGMGPR--GSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAV 181 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~---~g~g~~--~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~a 181 (334)
+.+.+|.+..|.+.-.+|.|.+-+.+ |=+..+ ..-...|..+..-++...++++.|.+ .+=++-.++++-.++
T Consensus 74 ~~~~sfiG~GyY~~~~P~vI~rnile~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAaAEAm 153 (450)
T COG0403 74 KVFTSFIGAGYYDTYTPPVILRNILENPEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVANASMLDEATAAAEAM 153 (450)
T ss_pred chhhhhccCcccCCcCcHHHHHHhhcCccccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHHHHHH
Confidence 57778999999998877766644432 211111 11122343445567788899999976 345566777777776
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCC
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSL 261 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v 261 (334)
+++..-. +++...++++...|....+-++---+..|.++..++.+|.++|++. .. ..+..|+++.|
T Consensus 154 ~ma~r~~-----------k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l~~~-~~--~~~~gv~vQyP 219 (450)
T COG0403 154 LMAKRVT-----------KKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDDLESA-DD--GDVFGVLVQYP 219 (450)
T ss_pred HHHHHhh-----------cCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccchhhhhhhc-cc--cCeEEEEEecC
Confidence 6653321 1235789999999999888877543445788999999999999987 43 36788999988
Q ss_pred CCCCC-CccCHHHHHHHHHHcCCEEEEe-cCcccccccCCCcccccccCCCCCccEEEecCc
Q 019931 262 FSMDG-DFAPMVELVKLRRKYGFLLVLD-DAHGTFVCGKNGGGVAEQFNCERDVDICVGTLS 321 (334)
Q Consensus 262 ~n~~G-~~~pL~~L~ela~k~ga~LivD-eAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sls 321 (334)
.. +| ...++.+|.+.+|++|+++++= |--+.+++-+- -+-++||++|+..
T Consensus 220 ~~-~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pP---------Ge~GADIvvG~~Q 271 (450)
T COG0403 220 NT-FGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPP---------GEFGADIVVGSAQ 271 (450)
T ss_pred CC-CCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCc---------cccCCceEEecCc
Confidence 74 56 6777999999999999988752 23333433221 1345789998764
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00037 Score=67.45 Aligned_cols=173 Identities=16% Similarity=0.123 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhHhCC--CcEEEeccHHHHHH-HHHH-HHhhhhhhccCCCccCCCCC-eEEEEcCCC---chhhHHHHH
Q 019931 150 NYHRLLESCLADLKKK--EDCLLCPTGFAANM-AVIV-AVGNIASLLAGDEKSFKDEK-IAIFSDALN---HASIIDGIR 221 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~--e~alv~~sG~~An~-~ai~-al~~~~~~~~~~~~~~~~~g-d~Vl~d~~~---H~s~~~g~~ 221 (334)
.-.-++++..++++|. +++++..+.+--+| -++. ++.. | +.++.+|+...+ -..++.-+. |..+. .
T Consensus 69 ~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~-G--~~~~~~PW~~~~~vKfLCPvPGYDRHFai~---E 142 (425)
T PF12897_consen 69 DGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLH-G--VPGSETPWCKEEKVKFLCPVPGYDRHFAIT---E 142 (425)
T ss_dssp S--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH-----TT-SS-GGGSS--EEEEEES--HHHHHHH---H
T ss_pred CChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhc-C--CCCCCCCchhccCceEEecCCCchHHHHHH---H
Confidence 3346788888999996 45666644333222 2222 2221 1 122345665443 344555443 33333 2
Q ss_pred HhhhcCCcEEEEeeCC----CHHHHHHHHhcCCCCcEEEEEcCCC-CCCCCccCHHHHHHHH----HHcCCEEEEecCcc
Q 019931 222 IAERTKMVEVFVYKHC----DMSHLKTLLSCCTMRKKVVVTDSLF-SMDGDFAPMVELVKLR----RKYGFLLVLDDAHG 292 (334)
Q Consensus 222 ls~~~~g~~v~~~~~~----D~~~Le~~l~~~~~~~~lVv~e~v~-n~~G~~~pL~~L~ela----~k~ga~LivDeAh~ 292 (334)
. .|.+.+.++.+ |++.+|+++.+.+ ..|.|.+-+.| ||+|.+..=+-+.+|| ...++.++.|+||+
T Consensus 143 ~----~Giemi~VpM~~dGPDmD~Ve~LV~~D~-svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~ 217 (425)
T PF12897_consen 143 H----FGIEMIPVPMTEDGPDMDMVEELVAEDP-SVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYA 217 (425)
T ss_dssp H----CT-EEEEEEEETTEE-HHHHHHHTHTST-TEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTT
T ss_pred h----hCcEEEecCCCCCCCCHHHHHHHHhcCC-ccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCce
Confidence 2 28888888864 9999999997533 56766655555 6899887744444444 36799999999999
Q ss_pred cccc-cCCCcc-------cccccCCCCCccEEEecCcc-cccCCc-cEEeeC
Q 019931 293 TFVC-GKNGGG-------VAEQFNCERDVDICVGTLSK-AAGCQG-GFIACR 334 (334)
Q Consensus 293 ~Gv~-G~~G~g-------~~~~~~~~~~~Div~~SlsK-a~G~~G-G~i~~~ 334 (334)
+--+ +..-.- .++..| .|+.-++..|+|| +|.+.| +|+++|
T Consensus 218 vHhL~~~~~~~~~~nil~~~~~AG-npdrv~~F~STSKITf~GaGva~~aaS 268 (425)
T PF12897_consen 218 VHHLYDEEPRDALLNILDACAKAG-NPDRVYVFASTSKITFPGAGVAFFAAS 268 (425)
T ss_dssp T-BSSSSSS------HHHHHHHTT--TTSEEEEEESTTTS-TTSS-EEEEE-
T ss_pred EeeccccccchhhhHHHHHHHHcC-CCCeEEEEecccccccCCcceeeeecC
Confidence 7655 332211 112222 2555588999999 455555 677764
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00016 Score=70.92 Aligned_cols=144 Identities=12% Similarity=0.082 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHhHhCCC--c-EE-EeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchh-hH-HHHHH
Q 019931 149 TNYHRLLESCLADLKKKE--D-CL-LCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHAS-II-DGIRI 222 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e--~-al-v~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s-~~-~g~~l 222 (334)
..+..++++.|.++++.+ + ++ +..||+.+..+++..++.+ +++.|+... ..+. .. +.++.
T Consensus 38 ~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~-------------~g~~vLv~g-~FG~r~~~eia~~ 103 (374)
T TIGR01365 38 KEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGC-------------RGVDVLAWE-SFGKGWVTDVTKQ 103 (374)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCC-------------CCCeEEEEC-HHHHHHHHHHHHh
Confidence 367788999999999853 3 44 4589999999999988742 255566543 1111 12 22222
Q ss_pred hhhcCCc-EEEEe--eCC---CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccc
Q 019931 223 AERTKMV-EVFVY--KHC---DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVC 296 (334)
Q Consensus 223 s~~~~g~-~v~~~--~~~---D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~ 296 (334)
. +. ++..+ +.. |+++++. +..+.++ +.=-.+|...|++++...+ +++++|||.+-++|..
T Consensus 104 ~----g~~~v~~l~~~~g~~~~~~~ve~-------~~~v~~v-hnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~ 169 (374)
T TIGR01365 104 L----KLPDVRVLEAEYGKLPDLKKVDF-------KNDVVFT-WNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQ 169 (374)
T ss_pred c----CCCCcEEEcCCCCCCCCHHHcCC-------CCCEEEe-cCCCchheecccccccccc--CCCcEEEEccchhcCC
Confidence 2 44 23333 332 6666652 1123332 2223468899987655322 5899999999887522
Q ss_pred cCCCcccccccCCCCCccEEEecCcccccCCccE
Q 019931 297 GKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGF 330 (334)
Q Consensus 297 G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~GG~ 330 (334)
.+.+. ++|+++.+--|+||+.+|.
T Consensus 170 ---------~l~~d-~iDv~~tgsQK~L~~ppGl 193 (374)
T TIGR01365 170 ---------DLDYH-KLDVVTFSWQKVLGGEGAH 193 (374)
T ss_pred ---------CCChh-HCcEEEEechhccCCCCce
Confidence 22333 4899999999999987765
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00059 Score=66.65 Aligned_cols=184 Identities=14% Similarity=0.071 Sum_probs=102.7
Q ss_pred eEEEeecCccCCCCCCHHHHHHHHHh-----cCCC----CccccccCchHHHHHHHHHHHhHhCCC---cEEEe-ccHHH
Q 019931 110 RLLLFSGNDYLGLSSHPTIAKAAARH-----GMGP----RGSALICGYTNYHRLLESCLADLKKKE---DCLLC-PTGFA 176 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~v~~a~~~~-----g~g~----~~sr~~~G~~~~~~~LE~~La~~~g~e---~alv~-~sG~~ 176 (334)
+.+||+..- .- -+++|++++++- +.|. .++|-- -...+++++++.|.++++.+ .++++ .||+.
T Consensus 7 ~~~~f~pGP-~~--lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~-~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~ 82 (365)
T PLN02452 7 RVFNFSAGP-AT--LPANVLAKAQAELYNWEGSGMSVMEMSHRGK-EFLSIIQKAEADLRELLDIPDNYEVLFLQGGAST 82 (365)
T ss_pred ceEeeeCCC-CC--CCHHHHHHHHHHHhcccccCccccccCCCch-HHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHH
Confidence 355776543 22 378898876542 2221 112211 11367789999999999964 35555 78899
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCe-EEEEcCCCchh-hHHHHHHhhhcCCcEEEEe--eCCC---HHHHHHHHhcC
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKI-AIFSDALNHAS-IIDGIRIAERTKMVEVFVY--KHCD---MSHLKTLLSCC 249 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd-~Vl~d~~~H~s-~~~g~~ls~~~~g~~v~~~--~~~D---~~~Le~~l~~~ 249 (334)
+..+++..+..+ ++ +.+........ ..+-++.. +...+.. +..+ +.++++ ++.
T Consensus 83 ~~ea~~~nl~~~--------------~~~~l~~~~G~fg~r~~~~a~~~----g~~~~~~~~~~~~~~~~~~~~~-~~~- 142 (365)
T PLN02452 83 QFAAIPLNLCKP--------------GDKADFVVTGSWSKKAAKEAKKY----CKTNVIASGKDEKYTKIPSVSE-WEL- 142 (365)
T ss_pred HHHHHHHhcCCC--------------CCeEEEEECCHHHHHHHHHHHHh----CCCcEEEecCCCCCCCCCChHH-cCC-
Confidence 999998887754 33 33333222211 22222221 3322222 1221 333443 222
Q ss_pred CCCcEEEEEcCCCCCCCC-ccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc
Q 019931 250 TMRKKVVVTDSLFSMDGD-FAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 250 ~~~~~lVv~e~v~n~~G~-~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G 328 (334)
.++.+.|.+.+.--.+|. +.|++++. ++++++|.++++|.. ..++. +.++...|..|.+|+.|
T Consensus 143 ~~~~~~v~~~hnETstGv~~~~~~~i~------~~~lvVDa~Ss~g~~---------pidv~-~~~v~~~saqK~lGP~G 206 (365)
T PLN02452 143 TPDAKFVHICANETIHGVEFKDYPDVG------NVPLVADMSSNFLSK---------PVDVS-KYGVIYAGAQKNVGPSG 206 (365)
T ss_pred CCCCcEEEECCCCCCCcEecCcccccC------CCeEEEECCccccCc---------ccCHH-HcCEEEEecccccCCCC
Confidence 224566665555555787 47787764 389999999997632 12222 23455679999999887
Q ss_pred -cEEee
Q 019931 329 -GFIAC 333 (334)
Q Consensus 329 -G~i~~ 333 (334)
|+++.
T Consensus 207 l~~v~v 212 (365)
T PLN02452 207 VTIVII 212 (365)
T ss_pred eEEEEE
Confidence 66554
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.001 Score=65.44 Aligned_cols=163 Identities=17% Similarity=0.130 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC---------------CcEEEeccHHHHHHHHHHHHhhhh-
Q 019931 126 PTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK---------------EDCLLCPTGFAANMAVIVAVGNIA- 189 (334)
Q Consensus 126 p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~---------------e~alv~~sG~~An~~ai~al~~~~- 189 (334)
|.+..-+..-+-|.-|-.+.+ +|...+||.-+.+|++. .-.+++.|.+++++.++.+....-
T Consensus 87 ~siladmLs~~i~~vGFtW~s--sPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i 164 (511)
T KOG0628|consen 87 PSILADMLSGGIGCVGFTWAS--SPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKI 164 (511)
T ss_pred HHHHHHHHhcccccccceeec--CcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHH
Confidence 433333333344444444554 57788999877777641 235888999999988887643210
Q ss_pred hhccC----CCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCC-CC-cEEEEE
Q 019931 190 SLLAG----DEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCT-MR-KKVVVT 258 (334)
Q Consensus 190 ~~~~~----~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~-~~-~~lVv~ 258 (334)
.-+.. .+.+.....-++++....|.|+-.++.++ +.+++.++.+ +.+.|++++++.. .+ .-++++
T Consensus 165 ~~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka~~i~----~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~ 240 (511)
T KOG0628|consen 165 EEIKSRPPELHESSVLARLVAYCSDQAHSSVEKACLIA----GVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVC 240 (511)
T ss_pred HHhhcCCCcccchhhhhhheEEecCcccchHHHhHhhc----ceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 00110 11111223456778888999999998887 7777776643 6788888887632 12 122222
Q ss_pred cCCCCCCCC--ccCHHHHHHHHHHcCCEEEEecCccccc
Q 019931 259 DSLFSMDGD--FAPMVELVKLRRKYGFLLVLDDAHGTFV 295 (334)
Q Consensus 259 e~v~n~~G~--~~pL~~L~ela~k~ga~LivDeAh~~Gv 295 (334)
. .++.+|. .-+|.+|..+|+++|+||.||.||+...
T Consensus 241 a-t~GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa 278 (511)
T KOG0628|consen 241 A-TLGTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSA 278 (511)
T ss_pred E-eecCccccccccHHHhcchhhhcCEEEEeehhhcccc
Confidence 2 2233343 4469999999999999999999999543
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0012 Score=67.39 Aligned_cols=161 Identities=18% Similarity=0.159 Sum_probs=111.3
Q ss_pred ccCchHHHHHHHHHHHhHhCCCcEEEe-ccHHHH---HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHH
Q 019931 145 ICGYTNYHRLLESCLADLKKKEDCLLC-PTGFAA---NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGI 220 (334)
Q Consensus 145 ~~G~~~~~~~LE~~La~~~g~e~alv~-~sG~~A---n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~ 220 (334)
..|+..+..+||+.|+++.|.+..-+. +||... -..+|++.... .++ +-..+.+..-..|+.-....
T Consensus 577 aqGY~~lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~-----kge----~hRnvClIPvSAHGTNPASA 647 (1001)
T KOG2040|consen 577 AQGYQQLFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLES-----KGE----GHRNVCLIPVSAHGTNPASA 647 (1001)
T ss_pred HhhHHHHHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHh-----ccC----CcceeEEEeecccCCChhhH
Confidence 457788889999999999999987666 788663 44455553321 111 11346667778898877776
Q ss_pred HHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC-HHHHHHHHHHcCCEEEEecCcccc
Q 019931 221 RIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP-MVELVKLRRKYGFLLVLDDAHGTF 294 (334)
Q Consensus 221 ~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p-L~~L~ela~k~ga~LivDeAh~~G 294 (334)
..+ |-+++++... |+.+|+.+.++++.+-..+.+.-++- .|...+ ++++.++.++||--++.|.|..--
T Consensus 648 ~Ma----gmkvvpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGANMNA 722 (1001)
T KOG2040|consen 648 AMA----GMKVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGANMNA 722 (1001)
T ss_pred Hhc----CCEEEEeeccCCCCccHHHHHHHHHHhhhhhheeEEecccc-cccccccHHHHHHHHHhcCCEEEecCCCccc
Confidence 777 7888877642 89999999988766666776665554 366654 999999999999999999876422
Q ss_pred cccCCCcccccccCCCCCccEEEecCcccccC
Q 019931 295 VCGKNGGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 295 v~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
-+| ++. .| .-+.|+.---|+|+|..
T Consensus 723 qVG-----lc~-pG-d~GaDV~HLNLHKTFcI 747 (1001)
T KOG2040|consen 723 QVG-----LCR-PG-DIGADVCHLNLHKTFCI 747 (1001)
T ss_pred eec-----ccC-Cc-cccccceeecccceeee
Confidence 122 221 11 12356776788999964
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0035 Score=67.55 Aligned_cols=194 Identities=16% Similarity=0.139 Sum_probs=115.1
Q ss_pred eeEEEeecCccCCCCCCHHHHHHH-HH--hcCCCC--ccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAA-AR--HGMGPR--GSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAV 181 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~-~~--~g~g~~--~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~a 181 (334)
+.+.+|.+..|.+.-.++.|.+.+ .. |=+..+ ..-...|.....-++...++++.|.+ .+=++-.++++-.++
T Consensus 78 ~~~~~fiG~G~y~~~~P~vi~~~i~~~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~ 157 (954)
T PRK12566 78 QVWTSLIGMGYHGTVTPTVILRNVLENPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLANASLLDEATAAAEAM 157 (954)
T ss_pred CCccccccccccCCcCcHHHHHHHHhCchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhhhhhhccchhHHHHHH
Confidence 345567776666665555553433 21 212211 11223555667788999999999987 445666777766666
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCC
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSL 261 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v 261 (334)
+++.... +++...|+++...|+..+.-++--....|.+++. +++++++.+ ++..|++..|
T Consensus 158 ~ma~~~~-----------~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~------~~~~~~~~~---~~~~v~vq~P 217 (954)
T PRK12566 158 ALAKRVA-----------KSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV------DAVDNLAAH---AVFGALLQYP 217 (954)
T ss_pred HHHHHHh-----------hcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE------cchhhcCCC---CEEEEEEECC
Confidence 6544211 0123568888888987766554322223566654 344554432 5777877766
Q ss_pred CCCCCCccCHHHHHHHHHHcCCEEEEe-cCcccccccCCCcccccccCCCCCccEEEecCcccccC---C----ccEEee
Q 019931 262 FSMDGDFAPMVELVKLRRKYGFLLVLD-DAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC---Q----GGFIAC 333 (334)
Q Consensus 262 ~n~~G~~~pL~~L~ela~k~ga~LivD-eAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~---~----GG~i~~ 333 (334)
. ..|.+.++++|.+++++.|+++++- |--+.+++- .. -+-++||++| -++.||. . .||+++
T Consensus 218 ~-~~G~i~d~~~i~~~~h~~gal~~~~~d~laL~ll~--------~P-ge~GADI~vG-~~Q~fGvp~~~GGP~ag~~a~ 286 (954)
T PRK12566 218 D-THGEIRDLRPLIDQLHGQQALACVAADLLSLLVLT--------PP-GELGADVVLG-STQRFGVPMGYGGPHAAYFAC 286 (954)
T ss_pred C-CceEEccHHHHHHHHHHcCCEEEEEeCHHHHhCCC--------Ch-hhcCCcEEee-CCCcCCCCCCCCCCCeeeeee
Confidence 5 4699999999999999999986632 112222221 11 1346799977 4565553 2 267765
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.025 Score=55.99 Aligned_cols=134 Identities=16% Similarity=0.113 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhHhCCCcE---EEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc
Q 019931 150 NYHRLLESCLADLKKKEDC---LLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT 226 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~e~a---lv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~ 226 (334)
..-.+.=+-++.+++.+.. ..+++|+++..++.+.-...- .. .++.+ ...|++....|.++-...+.-
T Consensus 120 ~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r---~~-~k~I~--~p~iv~~~~v~~a~eK~a~yf--- 190 (491)
T KOG1383|consen 120 KLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRR---KA-QKGID--KPNIVTPQNVHAAFEKAARYF--- 190 (491)
T ss_pred HHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHH---Hh-ccCCC--CccccchHHHHHHHHHHHhhE---
Confidence 3334444556667775432 455677888555554422210 00 01111 233666667777776665544
Q ss_pred CCcEEEEeeCC------CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHH-cCCEEEEecCcccccc
Q 019931 227 KMVEVFVYKHC------DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRK-YGFLLVLDDAHGTFVC 296 (334)
Q Consensus 227 ~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k-~ga~LivDeAh~~Gv~ 296 (334)
+.++..++.. |+..+.+.+.+ +|+.|+.+.++-|.|.+-|+++|.++.-+ +++.+.+|.+-+..+.
T Consensus 191 -~v~l~~V~~~~~~~~~D~~k~~~~i~e---Nti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~ 263 (491)
T KOG1383|consen 191 -EVELREVPLDEGDYRVDPGKVVRMIDE---NTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFIN 263 (491)
T ss_pred -EEEEEeeeccccceEecHHHHHHHhcc---ceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccc
Confidence 4555555532 77777777765 89999999999999999999999999998 9999999998875444
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.021 Score=55.81 Aligned_cols=147 Identities=16% Similarity=0.062 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHhHhCCC---cEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCe-EE-EEcCCCchhhHHHHHH
Q 019931 149 TNYHRLLESCLADLKKKE---DCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKI-AI-FSDALNHASIIDGIRI 222 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e---~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd-~V-l~d~~~H~s~~~g~~l 222 (334)
..++.++++.|.++++.+ +++++ .||+.+..++..-++.+ ++ ++ +... .+.+- .....
T Consensus 48 ~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll~~--------------g~~~~~~~~t-G~fg~-r~~~e 111 (364)
T PRK12462 48 SSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFSRP--------------GAAAPEYVTT-GYWSR-KAIGE 111 (364)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcCCC--------------CCcEEEEEeC-CHHHH-HHHHH
Confidence 367789999999999963 25555 55788888888877754 44 33 2322 22221 11222
Q ss_pred hhhcCCcEEEEee-CCCHHH---HHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccC
Q 019931 223 AERTKMVEVFVYK-HCDMSH---LKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGK 298 (334)
Q Consensus 223 s~~~~g~~v~~~~-~~D~~~---Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~ 298 (334)
+++-...++.... ..++.. .++ ++. .++.+.|.+.+.--.+|...| ++.+.+++++|+|.+-+++. +
T Consensus 112 a~~~g~v~~~~~~~~~~~~~~p~~~~-~~~-~~d~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s--~ 182 (364)
T PRK12462 112 ASRVAAMRVVWDGAASGYRTLPSLAE-LDW-DARAPFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMS--R 182 (364)
T ss_pred HHhcCCceEecCcCCCCCCcCCCHHH-hcc-CCCCcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhC--C
Confidence 2211122222110 111111 122 222 124555655544445687765 33334799999999887642 1
Q ss_pred CCcccccccCCCCCccEEEecCcccccCCc
Q 019931 299 NGGGVAEQFNCERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 299 ~G~g~~~~~~~~~~~Div~~SlsKa~G~~G 328 (334)
.+.+. +.|+++.+.-|++|+.|
T Consensus 183 -------pid~~-~~dvi~agsQKnlgP~G 204 (364)
T PRK12462 183 -------PFDVE-AYGMVYAHAQKNLGPAG 204 (364)
T ss_pred -------CCChH-HccEEEeeccccCCCCc
Confidence 12332 34899999999999877
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.046 Score=51.76 Aligned_cols=175 Identities=17% Similarity=0.188 Sum_probs=97.8
Q ss_pred ccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCc
Q 019931 118 DYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEK 197 (334)
Q Consensus 118 ~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~ 197 (334)
+||.+.++|.+.+++.+.-.|... + .-.|++. + .+=.-||+-|+..+-.-+..- +
T Consensus 69 EYLpi~Gl~~F~~~A~el~lg~~s--------~--a~kE~Rv---~----~vQslsGTGAl~~~A~Fl~~~---~----- 123 (410)
T KOG1412|consen 69 EYLPILGLPTFTKAATELLLGADS--------P--AIKEDRV---F----GVQSLSGTGALRIAADFLATF---Y----- 123 (410)
T ss_pred hhccccCchhhhhhhHHHhcCCCc--------h--hhhhccc---c----ceeeccccchhhhhHHHHHHh---c-----
Confidence 799999999888877665444321 1 1122221 1 123357776766655444331 1
Q ss_pred cCCCCCeEEEEcCC---CchhhHHHHHHhhhcCC-cEEEEeeC-------CCHHHHHHHHhcCCCCcEEEEEcCCCCCCC
Q 019931 198 SFKDEKIAIFSDAL---NHASIIDGIRIAERTKM-VEVFVYKH-------CDMSHLKTLLSCCTMRKKVVVTDSLFSMDG 266 (334)
Q Consensus 198 ~~~~~gd~Vl~d~~---~H~s~~~g~~ls~~~~g-~~v~~~~~-------~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G 266 (334)
....|+...+ +|..+. .-+ | .++..|+. -|++-+-..|+..+.+..+|+-...+||+|
T Consensus 124 ----~~~~VY~SnPTW~nH~~if---~~a----Gf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaCAhNPTG 192 (410)
T KOG1412|consen 124 ----NKNTVYVSNPTWENHHAIF---EKA----GFTTVATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACAHNPTG 192 (410)
T ss_pred ----ccceeEecCCchhHHHHHH---HHc----CCceeeeeeeecCCCceecHHHHHHHHhhCCCCcEEeeeccccCCCC
Confidence 1334554444 333222 111 3 23444432 266666666665443444555556699999
Q ss_pred CccC---HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCc-cEEEecCcccccCCc
Q 019931 267 DFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDV-DICVGTLSKAAGCQG 328 (334)
Q Consensus 267 ~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~-Div~~SlsKa~G~~G 328 (334)
.-+- ...|+++-++.+.+.+.|-|+....-|.-.+-. +-.+.+..+. =+++-||+|-||..+
T Consensus 193 mDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYn 259 (410)
T KOG1412|consen 193 MDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYN 259 (410)
T ss_pred CCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhccccc
Confidence 3322 667888888999999999998854334322221 1123333333 278899999999854
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.031 Score=53.93 Aligned_cols=128 Identities=16% Similarity=0.104 Sum_probs=83.4
Q ss_pred HHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEE
Q 019931 153 RLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVF 232 (334)
Q Consensus 153 ~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~ 232 (334)
..|+..+.+.+|.+..+-+.-|-.|-...+..+.+++.. .+|...+.....|.-+..+-.... |+.++
T Consensus 82 ~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~ik~~~~---------~pg~~~~~~sN~~FdTTr~h~~~n---g~~~~ 149 (471)
T COG3033 82 YALADAVKDIFGFQYTIPTHQGRGAENILIPILIKKGEQ---------EPGSKMVAFSNYHFDTTRGHIQIN---GATPR 149 (471)
T ss_pred HHHHHHHHHhcCceeeeeccCCccHHHHHHHHHhhhccc---------cCCccccccccceecchhHHHHhc---CCccc
Confidence 568888899999999999988887777777766665321 123333333445655554443321 33322
Q ss_pred Ee------------eC---CCHHHHHHHHhcCCCC-cE-EEEEcCCCCCCCCc---cCHHHHHHHHHHcCCEEEEecCcc
Q 019931 233 VY------------KH---CDMSHLKTLLSCCTMR-KK-VVVTDSLFSMDGDF---APMVELVKLRRKYGFLLVLDDAHG 292 (334)
Q Consensus 233 ~~------------~~---~D~~~Le~~l~~~~~~-~~-lVv~e~v~n~~G~~---~pL~~L~ela~k~ga~LivDeAh~ 292 (334)
-+ +. -|++.|+++|.+.... .. ++.+-+.++..|.. ..+++..+||++|++.++.|.+.-
T Consensus 150 n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~Rf 229 (471)
T COG3033 150 NVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARF 229 (471)
T ss_pred cccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhh
Confidence 11 11 2899999999886432 33 44455566677754 457889999999999999998753
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.12 Score=49.67 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=64.1
Q ss_pred CcEEEEeeCC-------CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCcc---CHHHHHHHHHHcCCEEEEecCccccccc
Q 019931 228 MVEVFVYKHC-------DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFA---PMVELVKLRRKYGFLLVLDDAHGTFVCG 297 (334)
Q Consensus 228 g~~v~~~~~~-------D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~---pL~~L~ela~k~ga~LivDeAh~~Gv~G 297 (334)
+..+..|+.- |++-+-+.+.+.+.+-.+++=...+||+|.-+ .+++|.++-++.+.+-++|.|+....-|
T Consensus 167 g~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG 246 (427)
T KOG1411|consen 167 GLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASG 246 (427)
T ss_pred CcceeeeeeccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccC
Confidence 5555555532 66655555555555667777888999999432 3778999999999999999999854333
Q ss_pred CCCccc--ccccCCCCCcc-EEEecCcccccCCc
Q 019931 298 KNGGGV--AEQFNCERDVD-ICVGTLSKAAGCQG 328 (334)
Q Consensus 298 ~~G~g~--~~~~~~~~~~D-iv~~SlsKa~G~~G 328 (334)
.--+-. ..+| +..+.. ++.-|++|-+|..|
T Consensus 247 ~~d~DA~avR~F-~~~g~~~~laQSyAKNMGLYg 279 (427)
T KOG1411|consen 247 DLDKDAQAVRLF-VEDGHEILLAQSYAKNMGLYG 279 (427)
T ss_pred CchhhHHHHHHH-HHcCCceEeehhhhhhcchhh
Confidence 211110 1111 122222 67789999999865
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.33 Score=41.55 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=41.6
Q ss_pred ccCchHHHHHHHHHHHhHhC------CCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCch
Q 019931 145 ICGYTNYHRLLESCLADLKK------KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHA 214 (334)
Q Consensus 145 ~~G~~~~~~~LE~~La~~~g------~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~ 214 (334)
..|...+.+++.+.+.+.+| .++++++++++.|+..++.+++.+ ||.|++..+++.
T Consensus 91 ~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dp--------------GD~VlVp~P~Y~ 152 (153)
T PLN02994 91 YHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADP--------------GDAFLVPTPYYA 152 (153)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCC--------------CCEEEEeCCCCC
Confidence 45666666777777766655 246788888899999999998875 788888777653
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.66 Score=44.15 Aligned_cols=192 Identities=13% Similarity=0.106 Sum_probs=112.6
Q ss_pred eeEEEeecCccCCCCCCHHHHHH----HHHh------cCCCCccccccCchHHHHHHHHHHHhHhCCC-cEEEeccHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKA----AARH------GMGPRGSALICGYTNYHRLLESCLADLKKKE-DCLLCPTGFAA 177 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a----~~~~------g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e-~alv~~sG~~A 177 (334)
+..+-||+|. |||. +...++. +.+| |--.+--+++++..+. -..++.+.|+. ..+...+.-++
T Consensus 66 ~~~iYlcGNS-LGLm-PK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~i----l~l~~~iVGA~e~EvavmNsLTv 139 (465)
T KOG3846|consen 66 KPVIYLCGNS-LGLM-PKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPI----LPLLAPIVGAQENEVAVMNSLTV 139 (465)
T ss_pred CCeEEEeccc-cccC-chhhHhHHHHHHHHHHhhhhhcccccccceeecchhh----hhhhhhhccCCchhhhhHhhhhh
Confidence 6788899998 8996 3333332 2333 2223445666665333 34566777853 33444444556
Q ss_pred HHHHHHH-HhhhhhhccCCCccCCCCCeEEEEcC----CCchhhHHHHHHhhhcCCcEEEEeeC------CCHHHHHHHH
Q 019931 178 NMAVIVA-VGNIASLLAGDEKSFKDEKIAIFSDA----LNHASIIDGIRIAERTKMVEVFVYKH------CDMSHLKTLL 246 (334)
Q Consensus 178 n~~ai~a-l~~~~~~~~~~~~~~~~~gd~Vl~d~----~~H~s~~~g~~ls~~~~g~~v~~~~~------~D~~~Le~~l 246 (334)
|..++.. +.+| +.+.-.|+... ..|..+...+++-.....-..+-+.. .-.+++-..|
T Consensus 140 Nlh~Ll~sFyKP-----------TekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~I 208 (465)
T KOG3846|consen 140 NLHSLLISFYKP-----------TEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTI 208 (465)
T ss_pred HHHHHHHHhcCC-----------cchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHH
Confidence 6665543 3332 11233455443 35555666666542110001111111 1345555566
Q ss_pred hcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc
Q 019931 247 SCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 247 ~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G 325 (334)
+......++|++.++.--+|..-++.+|...-+..|.++=.|=||++|-+- + +. -..++|+.+=+--|.+.
T Consensus 209 EkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVp-----L--~L-HdWgVDFACWCSYKYln 279 (465)
T KOG3846|consen 209 EKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVP-----L--QL-HDWGVDFACWCSYKYLN 279 (465)
T ss_pred HhcCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCc-----e--EE-eecCCceEEEeeecccc
Confidence 655556788999999999999999999997777789999999999976321 1 00 12567888877788873
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.25 Score=47.59 Aligned_cols=147 Identities=18% Similarity=0.115 Sum_probs=70.3
Q ss_pred HHHHHHHHhHh---C----CCcEEEeccH-HHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhh
Q 019931 153 RLLESCLADLK---K----KEDCLLCPTG-FAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224 (334)
Q Consensus 153 ~~LE~~La~~~---g----~e~alv~~sG-~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~ 224 (334)
.+||+.|.++. | ..+-++|.+| ++-.++++-||.... .+. .+--.|++..+++.+......+..
T Consensus 46 ~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~---~~~-----~~p~~VVa~aPYY~~Y~~qt~~f~ 117 (363)
T PF04864_consen 46 PELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNA---SPS-----SSPASVVAAAPYYSSYPEQTDFFD 117 (363)
T ss_dssp HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT----TT-----SSSEEEEE-SS--CHHHHHCCCT-
T ss_pred HHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCC---CCC-----CCCceeEecCCCccchHHHHHhcc
Confidence 56777777764 3 2456777665 566777777765420 011 123457777788776654433221
Q ss_pred hcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccc
Q 019931 225 RTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA 304 (334)
Q Consensus 225 ~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~ 304 (334)
.....+. .|..... ......+-+=++.+|+||||.+- + .+.+.-+..+|.|-||-..-+- .+.
T Consensus 118 ----s~~y~w~-Gda~~~~---~~~~~~~~IElVTSPNNPDG~lr--~---~V~~g~~~k~I~D~AYYWPhyT----pI~ 180 (363)
T PF04864_consen 118 ----SRLYKWA-GDASNFK---NSDNPSPYIELVTSPNNPDGQLR--E---AVLNGSSGKVIHDLAYYWPHYT----PIT 180 (363)
T ss_dssp ----BTTEEEE-EECCCGT---T-S-CCGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTTS-------
T ss_pred ----ccCcccc-ccHHhhc---cCCCCCCeEEEEeCCCCCccccc--c---hhcCCCCcceeeeeeeeccccc----ccC
Confidence 1111221 1211111 11112345558889999999651 1 1235556778999998754321 111
Q ss_pred cccCCCCCccEEEecCcccccCCc
Q 019931 305 EQFNCERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 305 ~~~~~~~~~Div~~SlsKa~G~~G 328 (334)
. ..+-||.+.|+||.=|-.|
T Consensus 181 ---~-~aD~DiMLFT~SK~TGHAG 200 (363)
T PF04864_consen 181 ---A-PADHDIMLFTLSKLTGHAG 200 (363)
T ss_dssp ---S--B--SEEEEEHHHHCS-GG
T ss_pred ---C-CCCCceEEEEEecccCccc
Confidence 1 1234899999999987665
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.70 E-value=2.5 Score=39.56 Aligned_cols=161 Identities=14% Similarity=0.129 Sum_probs=89.8
Q ss_pred HHHHHHHHhHhC---CCcEEEe--ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC
Q 019931 153 RLLESCLADLKK---KEDCLLC--PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK 227 (334)
Q Consensus 153 ~~LE~~La~~~g---~e~alv~--~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~ 227 (334)
.++...+..+.| ...|++. .+|++-. ..+.++..+. .+-..|+-.+....|-...+.-+
T Consensus 60 ne~a~~~i~l~glhav~nc~vvpl~tgmsls-lc~~s~r~kr-----------pkakyiiw~ridqks~~ksi~~a---- 123 (432)
T KOG3843|consen 60 NEFAKDAIHLAGLHAVANCFVVPLATGMSLS-LCFLSLRHKR-----------PKAKYIIWLRIDQKSCFKSIIHA---- 123 (432)
T ss_pred HHHHHHHHHHhhhhhhhceeEEeccccccHH-HHHHHHhhcC-----------CcccEEEEEecchHHHHHHHHhc----
Confidence 455555555666 3556666 5665433 3333344320 12344555555556655555444
Q ss_pred CcEEEEeeC--------CCHHHHHHHHhcCCCCcEEEE--EcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCccccccc
Q 019931 228 MVEVFVYKH--------CDMSHLKTLLSCCTMRKKVVV--TDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCG 297 (334)
Q Consensus 228 g~~v~~~~~--------~D~~~Le~~l~~~~~~~~lVv--~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G 297 (334)
|.+.+.+.. .|++.+++.+++..+...+.+ +.+.|.| -....+++|..+|..|++.-+|..||+...-
T Consensus 124 gfepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~sttscfap-r~pd~leaiaaica~~diphivnnayglqse- 201 (432)
T KOG3843|consen 124 GFEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAP-RSPDNLEAIAAICAAHDIPHIVNNAYGLQSE- 201 (432)
T ss_pred CCCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCC-CCCchHHHHHHHHHccCchhhhccccccchH-
Confidence 555555442 388999999988654434333 3333433 1122399999999999999999999875310
Q ss_pred CCCcccccccCCCCCccEEEecCccccc-CCccEEe
Q 019931 298 KNGGGVAEQFNCERDVDICVGTLSKAAG-CQGGFIA 332 (334)
Q Consensus 298 ~~G~g~~~~~~~~~~~Div~~SlsKa~G-~~GG~i~ 332 (334)
+.-+-..... --.++|-++-||-|.|- +.||.|.
T Consensus 202 e~i~~iaa~~-~~grida~vqsldknf~vpvggaii 236 (432)
T KOG3843|consen 202 ECIHKIAAAA-ECGRIDAFVQSLDKNFMVPVGGAII 236 (432)
T ss_pred HHHHHHHHHh-hhccHHHHHHHhhhcceeecchhHh
Confidence 0000011000 01356777789999984 3666543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 334 | ||||
| 2bwo_B | 401 | 5-Aminolevulinate Synthase From Rhodobacter Capsula | 4e-31 | ||
| 2bwn_A | 401 | 5-Aminolevulinate Synthase From Rhodobacter Capsula | 2e-30 | ||
| 3a2b_A | 398 | Crystal Structure Of Serine Palmitoyltransferase Fr | 1e-27 | ||
| 1fc4_A | 401 | 2-Amino-3-Ketobutyrate Coa Ligase Length = 401 | 6e-26 | ||
| 3tqx_A | 399 | Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A | 5e-25 | ||
| 1bs0_A | 384 | Plp-dependent Acyl-coa Synthase Length = 384 | 2e-23 | ||
| 1dj9_A | 384 | Crystal Structure Of 8-Amino-7-Oxonanoate Synthase | 2e-23 | ||
| 2x8u_A | 412 | Sphingomonas Wittichii Serine Palmitoyltransferase | 6e-23 | ||
| 2jgt_A | 422 | Low Resolution Structure Of Spt Length = 422 | 4e-22 | ||
| 2w8j_A | 427 | Spt With Plp-Ser Length = 427 | 4e-22 | ||
| 2w8w_A | 427 | N100y Spt With Plp-Ser Length = 427 | 5e-22 | ||
| 2jg2_A | 422 | High Resolution Structure Of Spt With Plp Internal | 2e-21 | ||
| 2w8u_A | 427 | Spt With Plp, N100y Length = 427 | 2e-21 | ||
| 2w8v_A | 427 | Spt With Plp, N100w Length = 427 | 3e-21 | ||
| 2w8t_A | 427 | Spt With Plp, N100c Length = 427 | 8e-21 | ||
| 4iw7_A | 399 | Crystal Structure Of 8-amino-7-oxononanoate Synthas | 5e-19 | ||
| 2wk8_A | 389 | Structure Of Holo Form Of Vibrio Cholerae Cqsa Leng | 2e-17 | ||
| 2wk7_A | 393 | Structure Of Apo Form Of Vibrio Cholerae Cqsa Lengt | 2e-17 | ||
| 3hqt_A | 409 | Plp-Dependent Acyl-Coa Transferase Cqsa Length = 40 | 2e-17 |
| >pdb|2BWO|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In Complex With Succinyl-Coa Length = 401 | Back alignment and structure |
|
| >pdb|2BWN|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus Length = 401 | Back alignment and structure |
|
| >pdb|3A2B|A Chain A, Crystal Structure Of Serine Palmitoyltransferase From Sphingobacterium Multivorum With Substrate L-Serine Length = 398 | Back alignment and structure |
|
| >pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase Length = 401 | Back alignment and structure |
|
| >pdb|3TQX|A Chain A, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase (Kbl) From Coxiella Burnetii Length = 399 | Back alignment and structure |
|
| >pdb|1BS0|A Chain A, Plp-dependent Acyl-coa Synthase Length = 384 | Back alignment and structure |
|
| >pdb|1DJ9|A Chain A, Crystal Structure Of 8-Amino-7-Oxonanoate Synthase (Or 7-Keto- 8aminipelargonate Or Kapa Synthase) Complexed With Plp And The Product 8(S)-Amino-7-Oxonanonoate (Or Kapa). The Enzyme Of Biotin Biosynthetic Pathway. Length = 384 | Back alignment and structure |
|
| >pdb|2X8U|A Chain A, Sphingomonas Wittichii Serine Palmitoyltransferase Length = 412 | Back alignment and structure |
|
| >pdb|2JGT|A Chain A, Low Resolution Structure Of Spt Length = 422 | Back alignment and structure |
|
| >pdb|2W8J|A Chain A, Spt With Plp-Ser Length = 427 | Back alignment and structure |
|
| >pdb|2W8W|A Chain A, N100y Spt With Plp-Ser Length = 427 | Back alignment and structure |
|
| >pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal Aldimine Length = 422 | Back alignment and structure |
|
| >pdb|2W8U|A Chain A, Spt With Plp, N100y Length = 427 | Back alignment and structure |
|
| >pdb|2W8V|A Chain A, Spt With Plp, N100w Length = 427 | Back alignment and structure |
|
| >pdb|2W8T|A Chain A, Spt With Plp, N100c Length = 427 | Back alignment and structure |
|
| >pdb|4IW7|A Chain A, Crystal Structure Of 8-amino-7-oxononanoate Synthase (biof) From Francisella Tularensis Length = 399 | Back alignment and structure |
|
| >pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa Length = 389 | Back alignment and structure |
|
| >pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa Length = 393 | Back alignment and structure |
|
| >pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa Length = 409 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* Length = 384 | Back alignment and structure |
|---|
Score = 274 bits (702), Expect = 3e-90
Identities = 79/230 (34%), Positives = 122/230 (53%), Gaps = 24/230 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
++ L FS NDYLGLS HP I +A + G+G GS + GY+ H+ LE LA+
Sbjct: 39 RQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG 98
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
LL +GFAAN AVI A + E D I +D L+HAS+++ ++
Sbjct: 99 YSRALLFISGFAANQAVIAA-------MMAKE----D---RIAADRLSHASLLEAASLSP 144
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFL 284
++ + H D++HL LL+ +++VVT+ +FSMDGD AP+ E+ ++ +++
Sbjct: 145 ----SQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGW 200
Query: 285 LVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334
L++DDAHGT V G+ G G + ++ V T K G G + C
Sbjct: 201 LMVDDAHGTGVIGEQGRGSCWLQKVK--PELLVVTFGKGFGVSGAAVLCS 248
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A Length = 409 | Back alignment and structure |
|---|
Score = 267 bits (685), Expect = 2e-87
Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 24/233 (10%)
Query: 106 RQFKRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLAD 161
+ ++ NDYL L++HP I A SA ++E LA
Sbjct: 56 QASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAK 115
Query: 162 LKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIR 221
++CLL +G+ AN+ ++ + ++ D H S+ +G R
Sbjct: 116 FTGFDECLLSQSGWNANVGLLQTICQ-----PNT---------NVYIDFFAHMSLWEGAR 161
Query: 222 IAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKY 281
A + + H + HL+ L+ ++V DS++S G AP+ ELV + +++
Sbjct: 162 YAN----AQAHPFMHNNCDHLRMLIQRH--GPGIIVVDSIYSTLGTIAPLAELVNISKEF 215
Query: 282 GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334
G L++D++H G NG G+ + R+V +L+K + G I C
Sbjct: 216 GCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRAGAIWCN 268
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} Length = 398 | Back alignment and structure |
|---|
Score = 264 bits (677), Expect = 2e-86
Identities = 79/231 (34%), Positives = 114/231 (49%), Gaps = 23/231 (9%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
+R+L+F N YLGL++ I KAA ++G G GS + G + H LE L+
Sbjct: 43 RRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG 102
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
KE +L TGF +N+ + L G D I D +HASIIDG R++
Sbjct: 103 KEAAILFSTGFQSNLGPLSC-------LMGRN----D---YILLDERDHASIIDGSRLS- 147
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCT-MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
+V Y H +M L+ LS K++ TD +FSM+GD + EL + ++
Sbjct: 148 ---FSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDA 204
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334
+++DDAH V G G G A F DVD+ +GT SK+ GGF+A
Sbjct: 205 AVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLGGFVAGD 255
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 Length = 401 | Back alignment and structure |
|---|
Score = 263 bits (674), Expect = 7e-86
Identities = 85/234 (36%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
++ F N+YLGL++HP + AA HG G ICG + H+ LE LA
Sbjct: 45 SHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLG 104
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
ED +L + F AN + L G E D AI SDALNHASIIDG+R+ +
Sbjct: 105 MEDAILYSSCFDANGGLFET-------LLGAE----D---AIISDALNHASIIDGVRLCK 150
Query: 225 RTKMVEVFVYKHCDMSHLKTLL---SCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKY 281
+ + Y + DM L+ L R ++ TD +FSMDG A + + L KY
Sbjct: 151 ----AKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKY 206
Query: 282 GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKA-AGCQGGFIACR 334
L+++DD+H G+NG G E + VDI GTL KA G GG+ A R
Sbjct: 207 DALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAAR 260
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* Length = 427 | Back alignment and structure |
|---|
Score = 262 bits (673), Expect = 2e-85
Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 23/231 (9%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K +L +Y+G++ P + A + G G GS ++ G + H +E L D
Sbjct: 64 KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYG 123
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
++ TG+ AN+ +I + G+ + DA +HASI DG +
Sbjct: 124 TTGAIVFSTGYMANLGIISTLAG-----KGE---------YVILDADSHASIYDGCQQGN 169
Query: 225 RTKMVEVFVYKHCDMSHLKTLLS-CCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
E+ ++H + L L K+VV + ++SM GD AP+ E+V + +K+G
Sbjct: 170 ----AEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGA 225
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334
++++D+AH G NG GV E E +D VGT SK+ G GGF+
Sbjct: 226 MVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVGGFVVSN 276
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} Length = 399 | Back alignment and structure |
|---|
Score = 261 bits (670), Expect = 3e-85
Identities = 80/234 (34%), Positives = 113/234 (48%), Gaps = 26/234 (11%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
K +L F N+YLGL+ HP + K A ++G G ICG H+ LE +++
Sbjct: 43 KEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLG 102
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
+D +L + F AN + + L D AI SD LNHASIIDGIR+ +
Sbjct: 103 TDDTILYSSCFDANGGLFETL-----LGPED---------AIISDELNHASIIDGIRLCK 148
Query: 225 RTKMVEVFVYKHCDMSHLKTLL---SCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKY 281
+ + YK+ M L+ L R K++ TD +FSMDG A + + L KY
Sbjct: 149 ----AQRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKY 204
Query: 282 GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKA-AGCQGGFIACR 334
L+++DD+H G+NG G E VDI GTL KA G GG+ +
Sbjct: 205 NALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASGGYTSGH 258
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* Length = 401 | Back alignment and structure |
|---|
Score = 249 bits (639), Expect = 1e-80
Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 21/231 (9%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
+ + ++ GNDYLG+ HP + A G G G+ I G T YHR LE+ +A L +
Sbjct: 46 QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ 105
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
KE L+ + + AN A + + L G I+SD+LNHAS+I+GI+
Sbjct: 106 KEAALVFSSAYNANDATLST---LRVLFPGL---------IIYSDSLNHASMIEGIKRNA 153
Query: 225 RTKMVEVFVYKHCDMSHLKTLL-SCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGF 283
K +++H D++HL+ L+ + K++ +S++SMDGDF P+ E+ + ++G
Sbjct: 154 GPK----RIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGA 209
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334
L +D+ H + G G GVAE+ +DI GTL+KA G GG+IA
Sbjct: 210 LTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFGGYIAAS 260
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 2e-07
Identities = 46/280 (16%), Positives = 84/280 (30%), Gaps = 67/280 (23%)
Query: 12 EEALSK-LEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQISIS 70
E+A + V + I LS + H + + V +F + VQ +
Sbjct: 26 EDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 71 DSTFQ--RWLHDV-------PSSGDENEIICGDGLANDKTITFARQFKRLLLFSG--NDY 119
+ ++L PS I D L ND + RL +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 120 LGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179
L L + G+ G G ++ +A + C F
Sbjct: 145 LELRPAKNVLI----DGVL--G----SG--------KTWVALDVCLSYKVQCKMDFK--- 183
Query: 180 AVI--VAVGN----------IASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK 227
I + + N + LL + ++ + L SI +R ++K
Sbjct: 184 --IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 228 MVEVFVYKHC-----DMSHLKTL----LSCCTMRKKVVVT 258
Y++C ++ + K LSC K+++T
Sbjct: 242 P-----YENCLLVLLNVQNAKAWNAFNLSC-----KILLT 271
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 2e-06
Identities = 50/368 (13%), Positives = 102/368 (27%), Gaps = 116/368 (31%)
Query: 10 WV--------EEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDY--EVFDEMQH 59
W+ E L L+ L L + P + S +D ++ H + + +
Sbjct: 186 WLNLKNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 60 ----------WDRNAV-------QISISDSTFQRWLHDVPSSGDENEIICGD---GLAND 99
+ A +I ++ T + + D S+ I L D
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLT--TRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 100 KTITFARQFKRLLLFSGNDYLGLSSH--PTIAKAAARHGMGPRGSALI--------CGYT 149
+ + L YL P PR ++I +
Sbjct: 302 EVKS---------LLL--KYLDCRPQDLPREVL-----TTNPRRLSIIAESIRDGLATWD 345
Query: 150 NY--------HRLLESCLADLKKKE------DCLLCPTGFAANMAVIVA---------VG 186
N+ ++ES L L+ E + P ++ V
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 187 NIA------SLLAGDEKSFK--------DEKIAIFSDALNHASIIDGIRIAER------- 225
+ SL+ K + K+ + ++ H SI+D I +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 226 TKMVEVFVYKH-------CDMSHLKTLLSCCT-----MRKKVVVTDSLFSMDGDFAPMVE 273
++ + Y H + TL + +K+ + ++ G ++
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 274 LVKLRRKY 281
+K + Y
Sbjct: 526 QLKFYKPY 533
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 2e-05
Identities = 43/273 (15%), Positives = 78/273 (28%), Gaps = 73/273 (26%)
Query: 2 ENSSLWDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWD 61
+ + WD W KL + + SL L P + + VF
Sbjct: 339 DGLATWDNWKHVNCDKLTTI-IESSLN--VLEPAEYRKMF-------DRLSVFPP----S 384
Query: 62 RNAVQISISDSTFQR-WLHDVPSSGDENEIICGDGLANDKTITFARQFKRLLLFSGNDYL 120
+ I W + S D ++ + L + +Q K + + YL
Sbjct: 385 AH-----IPTILLSLIWFDVIKS--DVMVVV--NKLHKYSLV--EKQPKESTISIPSIYL 433
Query: 121 GLSSHP--------------TIAKAAARHGMGP-RGSALICGYTNYH----------RLL 155
L I K + P + +H L
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 156 ESCLAD---LKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKD---EKIAIFSD 209
D L++K + A N A G+I + L K +K + +
Sbjct: 494 RMVFLDFRFLEQK----IRHDSTAWN-----ASGSILNTL-QQLKFYKPYICDNDPKYER 543
Query: 210 ALNHASIIDGIRIAERTKMVEVFVYKHCDMSHL 242
+N +I+D + E ++ K+ D+ +
Sbjct: 544 LVN--AILDFLPKIE-ENLIC---SKYTDLLRI 570
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 6e-04
Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 30/170 (17%)
Query: 166 EDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER 225
+ C+ F + I+A I +L I + H SI
Sbjct: 77 DKCVG----FNRTSSAILAT--ILALKPKKV-------IHYLPELPGHPSIERS------ 117
Query: 226 TKMVEVFVYKHCDMSHLKTLLSCCTMRKKVV--VTDSLFSMDGDFAPMVELVKLRRKYGF 283
K+V K+ + + +L+ V+ + + +++ +
Sbjct: 118 CKIVNA---KYFESDKVGEILNKIDKDTLVIITGSTMDLKVIE-LENFKKVINTAKNKEA 173
Query: 284 LLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKA-AGCQGGFIA 332
++ +DDA G V + + D+ V + K G +GG +A
Sbjct: 174 IVFVDDASGARVRLLFN----QPPALKLGADLVVTSTDKLMEGPRGGLLA 219
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 334 | |||
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.98 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.97 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.97 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.94 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.93 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.93 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.92 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.92 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.91 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.91 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.91 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.91 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.91 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.91 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.91 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.91 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.91 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.91 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.9 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.9 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.9 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.9 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.9 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.9 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.9 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.9 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.9 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.9 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.89 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.89 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.89 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.82 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.89 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.89 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.89 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.89 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.89 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.89 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.89 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.89 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.89 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.88 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.88 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.88 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.88 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.88 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.88 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.88 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.88 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.88 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.88 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.88 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.88 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.88 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.88 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.87 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.87 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.87 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.87 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.87 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.87 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.87 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.87 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.87 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.87 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.87 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.87 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.87 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.87 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.87 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.87 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.87 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.87 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.87 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.87 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.87 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.87 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.87 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.87 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.87 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.86 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.86 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.86 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.86 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.86 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.86 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.86 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.86 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.86 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.86 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.86 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.86 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.86 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.86 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.86 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.85 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.85 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.85 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.85 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.85 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.85 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.85 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.85 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.85 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.85 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.85 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.85 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.85 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.85 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.84 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.84 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.84 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.84 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.84 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.84 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.84 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.84 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.83 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.83 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.83 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.83 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.83 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.83 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.83 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.83 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.83 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.82 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.82 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.82 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.82 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.82 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.82 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.82 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.82 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.82 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.82 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.82 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.82 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.82 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.81 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.81 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.81 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.81 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.7 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.81 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.81 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.81 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.81 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.8 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.8 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.8 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.8 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.8 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.8 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.8 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.8 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.79 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.79 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.79 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.79 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.79 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.79 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.78 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.78 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.78 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.78 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.78 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.78 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.78 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.78 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.77 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.77 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.77 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.77 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.77 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.77 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.77 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.76 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.76 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.76 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.76 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.76 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.76 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.76 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.75 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.75 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.75 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.75 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.75 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.75 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.74 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.74 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.74 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.74 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.74 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.73 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.73 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.73 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.73 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.72 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.71 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.71 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.71 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.71 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.71 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.7 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.7 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.69 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.69 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.68 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.68 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.67 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.67 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.66 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.66 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.64 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.64 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.63 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.62 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.62 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.61 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.59 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.55 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.52 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.43 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.41 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.4 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.37 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.3 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.17 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.05 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 98.9 |
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=289.24 Aligned_cols=210 Identities=31% Similarity=0.513 Sum_probs=190.3
Q ss_pred cceeEEEeecCccCCCCCCHHHHHHHH----HhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHH
Q 019931 107 QFKRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVI 182 (334)
Q Consensus 107 ~g~~~l~f~sn~yLgl~~~p~v~~a~~----~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai 182 (334)
+|+++|||++|+|||+..||.+++++. +++.+.++++...|..+.+.+|+++|++++|.+.+++++||++||..++
T Consensus 62 ~g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al 141 (427)
T 2w8t_A 62 RGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGII 141 (427)
T ss_dssp TTEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHH
T ss_pred CCceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHH
Confidence 459999999999999989999999653 4677777889999988999999999999999999999999999999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCC-CcEEEEEcCC
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTM-RKKVVVTDSL 261 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~-~~~lVv~e~v 261 (334)
.++.++ +|.|+++.++|.++..++++. +++++.++++|+++|++++++... ++++|+++++
T Consensus 142 ~~l~~~--------------gd~vl~~~~~h~~~~~~~~~~----g~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~ 203 (427)
T 2w8t_A 142 STLAGK--------------GEYVILDADSHASIYDGCQQG----NAEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGV 203 (427)
T ss_dssp HHHSCT--------------TCEEEEETTCCHHHHHHHHHS----CSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESE
T ss_pred HHhcCC--------------CCEEEECCcccHHHHHHHHHc----CCeeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCC
Confidence 987654 889999999999999999887 899999999999999999986433 6899999999
Q ss_pred CCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCccEEeeC
Q 019931 262 FSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334 (334)
Q Consensus 262 ~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~GG~i~~~ 334 (334)
+||+|.+.|+++|+++|++||++||+||+|+.|+++++|.++.+++++.+++||+++||||+||+.|||++++
T Consensus 204 ~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g~~gG~v~~~ 276 (427)
T 2w8t_A 204 YSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVGGFVVSN 276 (427)
T ss_dssp ETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSCCEEEEEC
T ss_pred CCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhccCCCEEEeC
Confidence 9999999999999999999999999999999999988888887778887888999999999999999999874
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=267.94 Aligned_cols=247 Identities=34% Similarity=0.500 Sum_probs=212.2
Q ss_pred hhhHHHHHHHHHHHHHHccccccccccccCCCCccccccCCCCCCCCcchhcccccccccceeeeechhhhhhhhcccCC
Q 019931 4 SSLWDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQISISDSTFQRWLHDVPS 83 (334)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (334)
|..+.+++..+++++++++++|...++....+. |+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----------------------------------------~v~~--- 40 (399)
T 3tqx_A 4 MQEILSQLNKEIEGLKKAGLYKSERIITSPQNA----------------------------------------EIKV--- 40 (399)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCCCCCCBCSCSSS----------------------------------------EEEE---
T ss_pred hHhHHHHHHHHHHHHHHcCCccccccccCCCCc----------------------------------------eEee---
Confidence 445778899999999999999988776543332 2222
Q ss_pred CCCCcceeecCCCCCcccchhcccceeEEEeecCccCCCCCCHHHHHHH----HHhcCCCCccccccCchHHHHHHHHHH
Q 019931 84 SGDENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAKAA----ARHGMGPRGSALICGYTNYHRLLESCL 159 (334)
Q Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~g~~~l~f~sn~yLgl~~~p~v~~a~----~~~g~g~~~sr~~~G~~~~~~~LE~~L 159 (334)
+|++||||++|+|+|+..+|.+++++ .+++.+.+.+++..|..+.+.++++++
T Consensus 41 -----------------------~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l 97 (399)
T 3tqx_A 41 -----------------------GEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDI 97 (399)
T ss_dssp -----------------------TTEEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHH
T ss_pred -----------------------CCeeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHH
Confidence 34999999999999998899998854 456777777888889899999999999
Q ss_pred HhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCH
Q 019931 160 ADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDM 239 (334)
Q Consensus 160 a~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~ 239 (334)
++++|.+..+++++|++|+..++.+++++ +|.|+++.+.|.++..+++.. +.+++.+++.|+
T Consensus 98 a~~~~~~~~i~~~sGt~a~~~~l~~~~~~--------------gd~v~~~~~~~~~~~~~~~~~----g~~~~~~~~~d~ 159 (399)
T 3tqx_A 98 SEFLGTDDTILYSSCFDANGGLFETLLGP--------------EDAIISDELNHASIIDGIRLC----KAQRYRYKNNAM 159 (399)
T ss_dssp HHHHTCSEEEEESCHHHHHHTTHHHHCCT--------------TCEEEEETTCCHHHHHHHHSC----CSEEEEECTTCT
T ss_pred HHHHCCCcEEEECchHHHHHHHHHHhcCC--------------CCEEEECCcccHHHHHHHHHc----CCceeEeCCCCH
Confidence 99999999999999999999999887764 889999999999999888877 889999999999
Q ss_pred HHHHHHHhcCCC---CcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEE
Q 019931 240 SHLKTLLSCCTM---RKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDIC 316 (334)
Q Consensus 240 ~~Le~~l~~~~~---~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div 316 (334)
++|++++++... ++++|++++++||+|.+.|+++|.++|++||++||+||+|+.|++++++.+..+.+++.++.||+
T Consensus 160 ~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~ 239 (399)
T 3tqx_A 160 GDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDIL 239 (399)
T ss_dssp THHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEE
T ss_pred HHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEE
Confidence 999999986432 68999999999999999999999999999999999999999888888777776677765667899
Q ss_pred EecCccccc-CCccEEeeC
Q 019931 317 VGTLSKAAG-CQGGFIACR 334 (334)
Q Consensus 317 ~~SlsKa~G-~~GG~i~~~ 334 (334)
++||||+|| ..|||++++
T Consensus 240 ~~s~sK~~~g~~gG~~~~~ 258 (399)
T 3tqx_A 240 TGTLGKALGGASGGYTSGH 258 (399)
T ss_dssp EEESSSSSCSSCCEEEEEC
T ss_pred EecchHhcccCceEEEEcC
Confidence 999999998 889999874
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=274.21 Aligned_cols=209 Identities=26% Similarity=0.469 Sum_probs=188.5
Q ss_pred ccceeEEEeecCccCCCCCCHHHHHHHH----HhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHH
Q 019931 106 RQFKRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAV 181 (334)
Q Consensus 106 ~~g~~~l~f~sn~yLgl~~~p~v~~a~~----~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~a 181 (334)
.+|++|+||+||+|||+..||.+++++. +|+.+.++++...|+.+.++++++++++++|.+.++++++|++||..+
T Consensus 56 ~~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~ 135 (409)
T 3kki_A 56 QASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGL 135 (409)
T ss_dssp CCCTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEESCHHHHHHHH
T ss_pred CCCCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEecchHHHHHHH
Confidence 4679999999999999999999999654 456677778889998888899999999999999999999999999999
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCC
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSL 261 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v 261 (334)
++++.++ +|.|+++.++|.++..++++. +++++.++++|+++|++++++. ++++|+++++
T Consensus 136 l~~~~~~--------------gd~Vl~~~~~~~~~~~~~~~~----g~~~~~~~~~d~~~le~~l~~~--~~~~vi~~~~ 195 (409)
T 3kki_A 136 LQTICQP--------------NTNVYIDFFAHMSLWEGARYA----NAQAHPFMHNNCDHLRMLIQRH--GPGIIVVDSI 195 (409)
T ss_dssp HHHHCCT--------------TCEEEEETTSCHHHHHHHHHT----TCEEEEECTTCHHHHHHHHHHH--CSCEEEEESB
T ss_pred HHHhcCC--------------CCEEEECCCcCHHHHHHHHHc----CCeEEEecCCCHHHHHHHHHhc--CCeEEEECCC
Confidence 9988764 899999999999999998887 8999999999999999999862 4689999999
Q ss_pred CCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCccEEeeC
Q 019931 262 FSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334 (334)
Q Consensus 262 ~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~GG~i~~~ 334 (334)
+|++|.+.|+++|+++|++||++||+||+|+.|++|++|.++...+++.+++||+++||||+||+.||+++++
T Consensus 196 ~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~gg~v~~~ 268 (409)
T 3kki_A 196 YSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRAGAIWCN 268 (409)
T ss_dssp CTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSCEEEEES
T ss_pred CCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCCceEEEEC
Confidence 9999999999999999999999999999999999998888877777776678999999999999889998874
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=263.00 Aligned_cols=212 Identities=36% Similarity=0.621 Sum_probs=181.4
Q ss_pred cceeEEEeecCccCCCCCCHHHHHHHHH----hcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHH
Q 019931 107 QFKRLLLFSGNDYLGLSSHPTIAKAAAR----HGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVI 182 (334)
Q Consensus 107 ~g~~~l~f~sn~yLgl~~~p~v~~a~~~----~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai 182 (334)
+|+++++|++|+|+|++.+|++++++.+ ++.+.++++..++..+.+.+++++|++++|.+..+++++|+++|..++
T Consensus 44 ~g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~ 123 (401)
T 2bwn_A 44 GKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATL 123 (401)
T ss_dssp CEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHH
T ss_pred CCCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHH
Confidence 3589999999999999889999986643 455555667777788889999999999999988999999999999988
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCC-CCcEEEEEcCC
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCT-MRKKVVVTDSL 261 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~-~~~~lVv~e~v 261 (334)
.++... .+||.|+++.++|.++..+++.. +++++.++++|+++||+++++.. +++++|+++++
T Consensus 124 ~~l~~~------------~~gd~Vl~~~~~~~~~~~~~~~~----g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~~ 187 (401)
T 2bwn_A 124 STLRVL------------FPGLIIYSDSLNHASMIEGIKRN----AGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESV 187 (401)
T ss_dssp HHHHHH------------STTCEEEEETTCCHHHHHHHHHS----CCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESB
T ss_pred HHHhcC------------CCCCEEEECchhhHHHHHHHHHc----CCeEEEEcCCCHHHHHHHHHhhccCCceEEEEecC
Confidence 876531 13788999999999999888776 88999999999999999998543 36899999999
Q ss_pred CCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCccEEeeC
Q 019931 262 FSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334 (334)
Q Consensus 262 ~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~GG~i~~~ 334 (334)
+||+|.+.|+++|.++|++||+++|+||+|+.|.+|++|.++...+++.++.|++++||||+||+.|||++++
T Consensus 188 ~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~GG~~~~~ 260 (401)
T 2bwn_A 188 YSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFGGYIAAS 260 (401)
T ss_dssp CTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCCEEEEEC
T ss_pred cCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCCCEEecC
Confidence 9999999999999999999999999999999998888888776555654456899999999999999998864
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=250.02 Aligned_cols=207 Identities=37% Similarity=0.555 Sum_probs=176.7
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHH----hcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAAR----HGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIV 183 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~----~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~ 183 (334)
|++|+||++++++|+..+|.+++++.+ ++.+.+.+++..|..+...+|+++|++++|.++.+++++|++|+..++.
T Consensus 38 g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~~ 117 (384)
T 1bs0_A 38 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIA 117 (384)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHH
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHH
Confidence 489999999998998889999996643 4555555666667788899999999999999889999999999999998
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCC
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFS 263 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n 263 (334)
++.++ +|.|+++..+|.++...++.. |.+++.+++.|+++|++++++.++++++|++++++|
T Consensus 118 ~~~~~--------------gd~v~~~~~~~~~~~~~~~~~----g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~n 179 (384)
T 1bs0_A 118 AMMAK--------------EDRIAADRLSHASLLEAASLS----PSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFS 179 (384)
T ss_dssp HHCCT--------------TCEEEEETTCCHHHHHHHHTS----SSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCT
T ss_pred HhCCC--------------CcEEEEcccccHHHHHHHHHc----CCCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 87654 788999999999988888776 899999999999999999986433478999999999
Q ss_pred CCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCccEEeeC
Q 019931 264 MDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334 (334)
Q Consensus 264 ~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~GG~i~~~ 334 (334)
|+|.+.|+++|.++|++||++||+||+|+.|+++++|.++...++. +.||+++||||++|+.|||++++
T Consensus 180 ptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~~~GG~~~~~ 248 (384)
T 1bs0_A 180 MDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV--KPELLVVTFGKGFGVSGAAVLCS 248 (384)
T ss_dssp TTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC--CCSEEEEESSSTTSSCCEEEEEC
T ss_pred CCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCC--CCcEEEeeccchhhccCcEEEeC
Confidence 9999999999999999999999999999988777666655444443 45799999999999999998864
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=249.05 Aligned_cols=210 Identities=39% Similarity=0.599 Sum_probs=178.0
Q ss_pred cceeEEEeecCccCCCCCCHHHHHHHH----HhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHH
Q 019931 107 QFKRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVI 182 (334)
Q Consensus 107 ~g~~~l~f~sn~yLgl~~~p~v~~a~~----~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai 182 (334)
+|++||||++++++|+..+|.+++++. +|+.+.+++++..|..+...+|+++|++++|.++.+++++|++|+..++
T Consensus 43 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~ 122 (401)
T 1fc4_A 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLF 122 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTH
T ss_pred CCccEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHH
Confidence 458999999999999877999998664 4566555556666667888999999999999988899999999999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCC---CcEEEEEc
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTM---RKKVVVTD 259 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~---~~~lVv~e 259 (334)
.++..+ +|.|+++.+.|.++..+++.. +.+++.+++.|+++|++++++... ++++|+++
T Consensus 123 ~~~~~~--------------gd~v~~~~~~~~~~~~~~~~~----g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~ 184 (401)
T 1fc4_A 123 ETLLGA--------------EDAIISDALNHASIIDGVRLC----KAKRYRYANNDMQELEARLKEAREAGARHVLIATD 184 (401)
T ss_dssp HHHCCT--------------TCEEEEETTCCHHHHHHHHTS----CSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEE
T ss_pred HHHcCC--------------CCEEEEcchhHHHHHHHHHHc----CCceEEECCCCHHHHHHHHHHhhccCCCceEEEEe
Confidence 887654 788999999999888877665 899999999999999999975321 57899999
Q ss_pred CCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc-cCCccEEeeC
Q 019931 260 SLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQGGFIACR 334 (334)
Q Consensus 260 ~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~-G~~GG~i~~~ 334 (334)
+++||+|.+.|+++|.++|++||++||+||+|+.|+.+++|.++...+++.+++||++.||||+| |+.|||++++
T Consensus 185 ~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~gG~~~~~ 260 (401)
T 1fc4_A 185 GVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAAR 260 (401)
T ss_dssp SEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEEC
T ss_pred CCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCCEEEEcC
Confidence 99999999999999999999999999999999877766667665555666667899999999999 7789998864
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=243.07 Aligned_cols=209 Identities=36% Similarity=0.578 Sum_probs=179.4
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHH----HhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIV 183 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~----~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~ 183 (334)
|++++||++++++|+..+|.+++++. ++..+..+++...|..+..+++++.+++++|.++++++++|++|+..++.
T Consensus 42 g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~ 121 (398)
T 3a2b_A 42 GRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLS 121 (398)
T ss_dssp TEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHH
T ss_pred CceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH
Confidence 38999999999889888999998654 34445555667778889999999999999999999999999999999999
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCC-CcEEEEEcCCC
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTM-RKKVVVTDSLF 262 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~-~~~lVv~e~v~ 262 (334)
++..+ +|.|+++.+.|.++...++.. |.+++.+++.|+++|++++++... ++++|++++++
T Consensus 122 ~~~~~--------------gd~V~~~~p~~~~~~~~~~~~----g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~ 183 (398)
T 3a2b_A 122 CLMGR--------------NDYILLDERDHASIIDGSRLS----FSKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIF 183 (398)
T ss_dssp HSSCT--------------TCEEEEETTCCHHHHHHHHHS----SSEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBC
T ss_pred HHhCC--------------CCEEEECCccCHHHHHHHHHc----CCceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCC
Confidence 87654 889999999999998888776 899999999999999999986432 68899999999
Q ss_pred CCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCccEEeeC
Q 019931 263 SMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334 (334)
Q Consensus 263 n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~GG~i~~~ 334 (334)
||+|.+.|+++|.++|++||++||+||+|+.+++++++..+.+.+++.+++||+++||||+||+.|||++++
T Consensus 184 nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~GG~~~~~ 255 (398)
T 3a2b_A 184 SMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLGGFVAGD 255 (398)
T ss_dssp TTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSCEEEEEC
T ss_pred CCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCCcEEEeC
Confidence 999999999999999999999999999999887776565555555554456899999999999888998864
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=219.61 Aligned_cols=204 Identities=13% Similarity=0.066 Sum_probs=164.6
Q ss_pred eEEEeecCccCCCCCCHHHHHHHHHhcC--CCCccccccCchHHHHHHHHHHHhHhCC-----CcEEEeccHHHHHHHHH
Q 019931 110 RLLLFSGNDYLGLSSHPTIAKAAARHGM--GPRGSALICGYTNYHRLLESCLADLKKK-----EDCLLCPTGFAANMAVI 182 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~v~~a~~~~g~--g~~~sr~~~G~~~~~~~LE~~La~~~g~-----e~alv~~sG~~An~~ai 182 (334)
++|||++++|.++..+|.|++++.+.-. +..++....|..++++++++.+++++|. +.++++++|++|+..++
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~ 119 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAV 119 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHH
Confidence 5999999999999999999997765321 1122334557788999999999999986 67899999999999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----------CHHHHHHHHhcCCC
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----------DMSHLKTLLSCCTM 251 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----------D~~~Le~~l~~~~~ 251 (334)
.+++.+ +|.|+++.+.|.++...++.. +++++.++++ |+++|++++++
T Consensus 120 ~~l~~~--------------gd~vl~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--- 178 (407)
T 3nra_A 120 AATVAR--------------GDKVAIVQPDYFANRKLVEFF----EGEMVPVQLDYVSADETRAGLDLTGLEEAFKA--- 178 (407)
T ss_dssp HTTCCT--------------TCEEEEEESCCTHHHHHHHHT----TCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT---
T ss_pred HHhCCC--------------CCEEEEcCCcccchHHHHHHc----CCEEEEeecccccccCcCCCcCHHHHHHHHhh---
Confidence 887654 788999999999988888877 8888888872 89999999975
Q ss_pred CcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC-CCCCccEEEecCcccccCC
Q 019931 252 RKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN-CERDVDICVGTLSKAAGCQ 327 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~-~~~~~Div~~SlsKa~G~~ 327 (334)
++++|++++++||+|.+.| +++|+++|++||++||+||+|+.++++..+......++ ...+.+++++||||+||+.
T Consensus 179 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 258 (407)
T 3nra_A 179 GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLS 258 (407)
T ss_dssp TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCG
T ss_pred CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCC
Confidence 6788888899999999999 99999999999999999999998766533333222232 2345679999999999976
Q ss_pred c---cEEeeC
Q 019931 328 G---GFIACR 334 (334)
Q Consensus 328 G---G~i~~~ 334 (334)
| ||++++
T Consensus 259 G~r~G~~~~~ 268 (407)
T 3nra_A 259 GYRLGVAFGS 268 (407)
T ss_dssp GGCCEEEEEC
T ss_pred eeeEEEEEcC
Confidence 6 888764
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.9e-25 Score=214.99 Aligned_cols=219 Identities=16% Similarity=0.122 Sum_probs=162.3
Q ss_pred hhcccceeEEEeec-CccCCCC-CCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 103 TFARQFKRLLLFSG-NDYLGLS-SHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 103 ~~~~~g~~~l~f~s-n~yLgl~-~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
.++.+|++||||++ ++++.+. .||+|++++.+.- .+...++.+ ..+.+.+|+++|++++|.+.+++++||++||.
T Consensus 70 ~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~ 147 (439)
T 2oat_A 70 LWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAF--YNNVLGEYEEYITKLFNYHKVLPMNTGVEAGE 147 (439)
T ss_dssp EEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTTS--EESSHHHHHHHHHHHHTCSEEEEESSHHHHHH
T ss_pred EEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccCcc--CCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHH
Confidence 34678899999988 5688888 8999999886542 222222322 35677999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh--------cCCcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER--------TKMVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~--------~~g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
.+++++..-..- .++. ..+++++|+.+..+|+++...+.++.. .....++.++++|+++||++++. +
T Consensus 148 ~al~~~~~~~~~-~~g~--~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~--~ 222 (439)
T 2oat_A 148 TACKLARKWGYT-VKGI--QKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQD--P 222 (439)
T ss_dssp HHHHHHHHHHHH-TTCC--CTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSSCHHHHHHHTTS--T
T ss_pred HHHHHHHHHhhh-ccCC--CCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCCCHHHHHHHhCC--C
Confidence 999976520000 0000 002356777888899987766655410 00146778889999999999952 3
Q ss_pred CcEEEEEcCCCCCCCCcc----CHHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccccC
Q 019931 252 RKKVVVTDSLFSMDGDFA----PMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~----pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++|+++++++++|.+. ++++|+++|++||++||+||+|. | +|++|.+++ +++++.+ |++ ||||++|+
T Consensus 223 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g-~g~~g~~~~~~~~~~~~--Di~--t~sK~l~~ 296 (439)
T 2oat_A 223 NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT-G-LARTGRWLAVDYENVRP--DIV--LLGKALSG 296 (439)
T ss_dssp TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSGGGGGTCCC--SEE--EECGGGGT
T ss_pred CEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CccCCcchhHHHhCCCC--cEE--EecccccC
Confidence 689999999999999876 69999999999999999999995 6 788887664 6677655 555 99999975
Q ss_pred C---ccEEeeC
Q 019931 327 Q---GGFIACR 334 (334)
Q Consensus 327 ~---GG~i~~~ 334 (334)
- +|+++++
T Consensus 297 G~~~~G~v~~~ 307 (439)
T 2oat_A 297 GLYPVSAVLCD 307 (439)
T ss_dssp TSSCCEEEEEC
T ss_pred CCCCeEEEEEC
Confidence 2 6787764
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.7e-25 Score=214.12 Aligned_cols=212 Identities=17% Similarity=0.162 Sum_probs=157.0
Q ss_pred hcccceeEEEeecCcc---CCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHh--CC-CcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGNDY---LGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLK--KK-EDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn~y---Lgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~--g~-e~alv~~sG~~A 177 (334)
++.+|++||||+++.+ ||+ .||+|++++.+.-.....+....|..+.+.+|+++|++++ +. +++++++||++|
T Consensus 38 ~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea 116 (439)
T 3dxv_A 38 IEENGRELIDLSGAWGAASLGY-GHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDA 116 (439)
T ss_dssp EETTSCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHH
T ss_pred EeCCCCEEEECCCchhhccCCC-CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHH
Confidence 3466799999999988 887 7999999776532211223345567889999999999998 45 688999999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC----------CcEEEEeeCC----------
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK----------MVEVFVYKHC---------- 237 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~----------g~~v~~~~~~---------- 237 (334)
|..+++++... .+++++|+.+..+|+.+..++.+..... ...+..++++
T Consensus 117 ~~~al~~~~~~-----------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (439)
T 3dxv_A 117 NEAAYRAIVKA-----------TGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDA 185 (439)
T ss_dssp HHHHHHHHHHH-----------HSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHH
T ss_pred HHHHHHHHHHH-----------hCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHH
Confidence 99999975321 0247888899999998877665542100 0012334444
Q ss_pred CHHHHHHHHh-cCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCC
Q 019931 238 DMSHLKTLLS-CCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCER 311 (334)
Q Consensus 238 D~~~Le~~l~-~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~ 311 (334)
|+++||++++ ..++++++|++++++|++|.+.| +++|+++|++||++||+||+|+ | +|++|... .+++++.+
T Consensus 186 d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-g-~g~~g~~~~~~~~~~~~ 263 (439)
T 3dxv_A 186 ILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV-G-LARSGRLHCFEHEGFVP 263 (439)
T ss_dssp HHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-C-TTTTSSSSGGGGTTCCC
T ss_pred HHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCchhhHHHhcCCCC
Confidence 6899999994 22346899999999999999998 9999999999999999999998 4 67777643 45666654
Q ss_pred CccEEEecCcccccC--CccEEee
Q 019931 312 DVDICVGTLSKAAGC--QGGFIAC 333 (334)
Q Consensus 312 ~~Div~~SlsKa~G~--~GG~i~~ 333 (334)
|++ ||||+||+ ..|++++
T Consensus 264 --di~--s~sK~~~~G~riG~~~~ 283 (439)
T 3dxv_A 264 --DIL--VLGKGLGGGLPLSAVIA 283 (439)
T ss_dssp --SEE--EECGGGGTTSCCEEEEE
T ss_pred --CEE--EEcchhcCCcceEEEEE
Confidence 555 99999985 2277765
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=210.90 Aligned_cols=218 Identities=15% Similarity=0.126 Sum_probs=150.9
Q ss_pred hcccceeEEEeec-CccCCCC-CCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHH
Q 019931 104 FARQFKRLLLFSG-NDYLGLS-SHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMA 180 (334)
Q Consensus 104 ~~~~g~~~l~f~s-n~yLgl~-~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ 180 (334)
++.+|++||||++ ++++.+. .||+|++|+.+.- .+...++.+ ..+...+|+++|++++|.+++++++||++||..
T Consensus 60 ~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~ 137 (433)
T 1z7d_A 60 YDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAF--FSVPLGICERYLTNLLGYDKVLMMNTGAEANET 137 (433)
T ss_dssp EETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTS--EEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH
T ss_pred EECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCCc--CCHHHHHHHHHHHhhcCCCeEEEeCCHHHHHHH
Confidence 4567899999988 5678888 8999999886542 222222222 467889999999999999999999999999999
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc--------CCcEEEEeeCCCHHHHHHHHhcCCCC
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT--------KMVEVFVYKHCDMSHLKTLLSCCTMR 252 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~--------~g~~v~~~~~~D~~~Le~~l~~~~~~ 252 (334)
+++++..-.. -..+ ...+++.+|+.+..+|+++...+.+.... ....+..++++|+++|+++++. ++
T Consensus 138 al~~a~~~~~-~~~g--~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~--~~ 212 (433)
T 1z7d_A 138 AYKLCRKWGY-EVKK--IPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKD--PN 212 (433)
T ss_dssp HHHHHHHHHH-HTSC--CCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTS--TT
T ss_pred HHHHHHHHhh-hccC--CCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCCCHHHHHHHhCC--CC
Confidence 9987542000 0000 00023566777888898776655544200 0135677888999999999952 36
Q ss_pred cEEEEEcCCCCCCCCcc----CHHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccccCC
Q 019931 253 KKVVVTDSLFSMDGDFA----PMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAGCQ 327 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~----pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G~~ 327 (334)
+++|+++++++++|.+. ++++|+++|++||++||+||+|+ | +|++|.+++ +++++.+ |++ ||||++|+-
T Consensus 213 ~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g-~g~~g~~~~~~~~~~~~--di~--t~sK~l~~G 286 (433)
T 1z7d_A 213 VCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-G-LGRTGKLLCVHHYNVKP--DVI--LLGKALSGG 286 (433)
T ss_dssp EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSGGGGGTCCC--SEE--EECGGGGTT
T ss_pred EEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-C-CCcCCcchhhHhcCCCC--CEE--EECccccCC
Confidence 89999999999999876 69999999999999999999997 6 788887654 5667655 555 899999742
Q ss_pred ---ccEEeeC
Q 019931 328 ---GGFIACR 334 (334)
Q Consensus 328 ---GG~i~~~ 334 (334)
+|+++++
T Consensus 287 ~~~~G~v~~~ 296 (433)
T 1z7d_A 287 HYPISAVLAN 296 (433)
T ss_dssp SSCCEEEEEC
T ss_pred CCCeEEEEEC
Confidence 5777764
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=205.99 Aligned_cols=213 Identities=19% Similarity=0.165 Sum_probs=158.2
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
++.+|++||||++| ++||+ .||+|++++.+.- .+..++. .+..+.+++|++++++++|.+++++++||++||.
T Consensus 31 ~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~ 107 (395)
T 3nx3_A 31 FDDKAKKYLDFSSGIGVCALGY-NHAKFNAKIKAQVDKLLHTSN--LYYNENIAAAAKNLAKASALERVFFTNSGTESIE 107 (395)
T ss_dssp EETTCCEEEESSHHHHTCTTCB-SCHHHHHHHHHHHTTCSCCCT--TSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHH
T ss_pred EECCCCEEEECCCcHHhccCCC-CCHHHHHHHHHHHHhcccccc--ccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHH
Confidence 35677999999998 56777 6899999876542 2222222 2346888999999999999899999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhh--------hcCCcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE--------RTKMVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~--------~~~g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
.+++++...... . ..+++.+|+.+..+|+.......+.. .....++..++++|+++|++++++
T Consensus 108 ~al~~~~~~~~~--~----g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--- 178 (395)
T 3nx3_A 108 GAMKTARKYAFN--K----GVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVNE--- 178 (395)
T ss_dssp HHHHHHHHHHHH--T----TCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHHHHHTTCCT---
T ss_pred HHHHHHHHHhhc--c----CCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHHHHHHhccC---
Confidence 999876542100 0 01236677788889988766554431 011356778889999999998863
Q ss_pred CcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEecCcccccC
Q 019931 252 RKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++|++++++|++|.+.| +++|+++|++||++||+||+|+. +|++|... .+++++.+ |++ ||||++|+
T Consensus 179 ~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~--~g~~g~~~~~~~~~~~~--d~~--t~sK~~~~ 252 (395)
T 3nx3_A 179 KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCG--MGRSGKFFAYEHAQILP--DIM--TSAKALGC 252 (395)
T ss_dssp TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSSSGGGGGTCCC--SEE--EECGGGTT
T ss_pred CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccC--CCcCCcchhHHhcCCCC--CEE--EecccccC
Confidence 7899999999999999988 99999999999999999999983 56666543 35566544 444 89999975
Q ss_pred --CccEEeeC
Q 019931 327 --QGGFIACR 334 (334)
Q Consensus 327 --~GG~i~~~ 334 (334)
..|+++++
T Consensus 253 G~~~G~~~~~ 262 (395)
T 3nx3_A 253 GLSVGAFVIN 262 (395)
T ss_dssp TSCCEEEEEC
T ss_pred CCceEEEEEc
Confidence 23777653
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-24 Score=211.52 Aligned_cols=218 Identities=16% Similarity=0.128 Sum_probs=156.5
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~A 177 (334)
++.+|++||||+++ ++||++ ||+|++|+.+. ..+...+....+..+...+|+++|+++++ .+++++++||++|
T Consensus 50 ~d~~G~~ylD~~s~~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA 128 (472)
T 3hmu_A 50 NDSEGEEILDAMAGLWCVNIGYG-RDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEA 128 (472)
T ss_dssp EETTCCEEECTTHHHHTCTTCBC-CHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHH
T ss_pred EECCCCEEEECCCchhhccCCCC-CHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHH
Confidence 46778999999986 568885 99999977543 22221223334457888999999999985 4678999999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc---------CCcEEEEee----CCC------
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT---------KMVEVFVYK----HCD------ 238 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~---------~g~~v~~~~----~~D------ 238 (334)
|..+++++...... .+ .+++..+|+.+..+|+.......+.... .+...+.++ ++|
T Consensus 129 ~~~aik~a~~~~~~--~g---~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~ 203 (472)
T 3hmu_A 129 NDTNIRMVRTYWQN--KG---QPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEE 203 (472)
T ss_dssp HHHHHHHHHHHHHH--TT---CTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHH
T ss_pred HHHHHHHHHHHHHh--cC---CCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcccCHHH
Confidence 99999987652100 00 0124677888999999887666554100 012222222 233
Q ss_pred -----HHHHHHHHhcCC-CCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-cccc
Q 019931 239 -----MSHLKTLLSCCT-MRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQF 307 (334)
Q Consensus 239 -----~~~Le~~l~~~~-~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~ 307 (334)
+++||+++++.. .++++|++|++++++|.+.| |++|+++|++||++||+||+|+. +|++|..+ .+++
T Consensus 204 ~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~g--fgr~G~~~a~~~~ 281 (472)
T 3hmu_A 204 FGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICG--FGRTGNWFGTQTM 281 (472)
T ss_dssp HHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTT--TTTTSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccC--CcccCccchhHHh
Confidence 788999887432 36789999999999999887 99999999999999999999984 67777543 5677
Q ss_pred CCCCCccEEEecCcccccCCc---cEEee
Q 019931 308 NCERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
++.| ||+ ||||++|.-| |++++
T Consensus 282 ~v~p--di~--t~sK~l~gg~~plG~v~~ 306 (472)
T 3hmu_A 282 GIRP--HIM--TIAKGLSSGYAPIGGSIV 306 (472)
T ss_dssp TCCC--SEE--EECGGGTTTSSCCEEEEE
T ss_pred CCCC--cee--eechhhhcCCcceEEEEE
Confidence 8766 455 7999997643 66665
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.5e-24 Score=206.09 Aligned_cols=213 Identities=20% Similarity=0.170 Sum_probs=155.7
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
++.+|++||||+++ +++|+ .||++++++.+.- .....++. ...+...+|+++|++++|.+++++++||++||.
T Consensus 52 ~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~ai~~~~~~~~~~~~~--~~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~ 128 (420)
T 2pb2_A 52 WDQQGKEYIDFAGGIAVTALGH-CHPALVEALKSQGETLWHTSNV--FTNEPALRLGRKLIDATFAERVLFMNSGTEANE 128 (420)
T ss_dssp EETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCCCCCTT--SCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHH
T ss_pred EECCCCEEEEccccccccccCC-CCHHHHHHHHHHHHhcccccCc--cCCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHH
Confidence 45678999999987 88999 7999999876542 22222222 246888999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc--------CCcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT--------KMVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~--------~g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
.+++++..... ..+ ..+++.+|+.+..+|+.+...+.+.... ....+..++++|+++|++++++
T Consensus 129 ~al~~~~~~~~--~~~---~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~le~~i~~--- 200 (420)
T 2pb2_A 129 TAFKLARHYAC--VRH---SPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMDD--- 200 (420)
T ss_dssp HHHHHHHHHHH--HHT---CTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCHHHHHHHCCT---
T ss_pred HHHHHHHHHhh--hcc---CCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCHHHHHHHhcc---
Confidence 99998754100 000 0023467778888998877666554100 0113677788899999999864
Q ss_pred CcEEEEEcCCCCCCCC----ccCHHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEecCcccccC
Q 019931 252 RKKVVVTDSLFSMDGD----FAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~----~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++|++++++|++|. ..++++|+++|++||++||+||+|+ | +|++|..+ .+.+++.+ |++ ||||++|+
T Consensus 201 ~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~-g-~~~~g~~~~~~~~~~~~--dii--t~sK~l~~ 274 (420)
T 2pb2_A 201 HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQC-G-MGRTGDLFAYMHYGVTP--DIL--TSAKALGG 274 (420)
T ss_dssp TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSHHHHHTCCC--SEE--EECGGGGT
T ss_pred CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCc-C-cccCCcHHHHHhcCCCC--CeE--EecccccC
Confidence 7899999999998886 2458999999999999999999995 5 67777665 35566554 555 89999984
Q ss_pred --CccEEee
Q 019931 327 --QGGFIAC 333 (334)
Q Consensus 327 --~GG~i~~ 333 (334)
..|++++
T Consensus 275 G~~iG~~~~ 283 (420)
T 2pb2_A 275 GFPVSAMLT 283 (420)
T ss_dssp TSCCEEEEE
T ss_pred CCceEEEEE
Confidence 1256554
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=206.89 Aligned_cols=214 Identities=14% Similarity=0.080 Sum_probs=142.7
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~A 177 (334)
++.+|++||||+++ .+||+. ||+|++|+.+.- .+.. +....+..+...+|+++|+++++ .+++++++||++|
T Consensus 39 ~d~~g~~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 116 (448)
T 3dod_A 39 KDINGKEYYDGFSSVWLNVHGHR-KKELDDAIKKQLGKIAH-STLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEA 116 (448)
T ss_dssp EETTSCEEEETTHHHHTCSSCBS-CHHHHHHHHHHHTTCSC-CCCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHH
T ss_pred EECCCCEEEECCcchhhccCCCC-CHHHHHHHHHHHHhccC-ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHH
Confidence 45678999999984 678985 999999876542 2221 12234557888999999999984 5678999999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCC---CCeEEEEcCCCchhhHHHHHHhhhcC--------CcEEEEeeCC---------
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKD---EKIAIFSDALNHASIIDGIRIAERTK--------MVEVFVYKHC--------- 237 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~---~gd~Vl~d~~~H~s~~~g~~ls~~~~--------g~~v~~~~~~--------- 237 (334)
|..+++++..... .++ ++.+|+.+..+|+.....+.+..... ...+..++.+
T Consensus 117 ~~~al~~~~~~~~--------~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (448)
T 3dod_A 117 MEIALKMAFQYWK--------NIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGD 188 (448)
T ss_dssp HHHHHHHHHHHHH--------HTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCC
T ss_pred HHHHHHHHHHHHH--------hhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccc
Confidence 9999998765200 012 35667778888887765554432100 0112222322
Q ss_pred -------CHHHHHHHHhcCCCCcEEEEEcCCC-CCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-c
Q 019931 238 -------DMSHLKTLLSCCTMRKKVVVTDSLF-SMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-A 304 (334)
Q Consensus 238 -------D~~~Le~~l~~~~~~~~lVv~e~v~-n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~ 304 (334)
|+++||+++++...++++|++|+++ |++|.+.| +++|+++|++||++||+||+|+. +|++|..+ .
T Consensus 189 ~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g--~g~~g~~~a~ 266 (448)
T 3dod_A 189 PDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATG--FGRTGKMFAC 266 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTT--TTTTSSSSGG
T ss_pred hhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccC--CCcccchhhh
Confidence 4899999997332367899999999 99998877 99999999999999999999983 66777654 4
Q ss_pred cccCCCCCccEEEecCcccccC---CccEEee
Q 019931 305 EQFNCERDVDICVGTLSKAAGC---QGGFIAC 333 (334)
Q Consensus 305 ~~~~~~~~~Div~~SlsKa~G~---~GG~i~~ 333 (334)
+++++.+ |++ ||||++|+ .-|++++
T Consensus 267 ~~~~~~~--di~--t~sK~l~~G~~~ig~v~~ 294 (448)
T 3dod_A 267 EHENVQP--DLM--AAGKGITGGYLPIAVTFA 294 (448)
T ss_dssp GGGTCCC--SEE--EECGGGGTTSSCCEEEEE
T ss_pred hhcCCCC--CEE--EecccccCCcCceEEEEE
Confidence 6777766 444 89999974 2256664
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=208.77 Aligned_cols=217 Identities=17% Similarity=0.139 Sum_probs=156.7
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~A 177 (334)
++.+|++||||+++ ++||+ .||+|++|+.+. .....++.. .+.++.+.+|+++|+++++ .+++++++||++|
T Consensus 49 ~d~~G~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~l~~~~~~~~~-~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA 126 (476)
T 3i5t_A 49 HTEDGRRLIDGPAGMWCAQVGY-GRREIVDAMAHQAMVLPYASPW-YMATSPAARLAEKIATLTPGDLNRIFFTTGGSTA 126 (476)
T ss_dssp EETTCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHCCCCCTT-TCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHH
T ss_pred EECCCCEEEECCCchhhccCCC-CCHHHHHHHHHHHHhccCcccC-ccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHH
Confidence 45778999999987 45888 499999977543 222222222 4567889999999999984 6789999999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc----------CCcEEEEeeC-----C-C---
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT----------KMVEVFVYKH-----C-D--- 238 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~----------~g~~v~~~~~-----~-D--- 238 (334)
|..+++++..... .++ .+++..+|+.+..+|+....++.+.... .+...+.+++ + |
T Consensus 127 ~~~Aik~a~~~~~--~~g---~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 201 (476)
T 3i5t_A 127 VDSALRFSEFYNN--VLG---RPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEA 201 (476)
T ss_dssp HHHHHHHHHHHHH--HTT---CTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHH
T ss_pred HHHHHHHHHHHHH--hcC---CCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHH
Confidence 9999998765210 000 0134678888999999887766544210 0222333333 2 1
Q ss_pred -----HHHHHHHHhcCC-CCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-cc-c
Q 019931 239 -----MSHLKTLLSCCT-MRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AE-Q 306 (334)
Q Consensus 239 -----~~~Le~~l~~~~-~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~-~ 306 (334)
+++||+++++.. .++++|++|++++++|.+.| |++|+++|++||++||+||+|+. +|++|..+ ++ +
T Consensus 202 ~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g--~gr~G~~~~~~~~ 279 (476)
T 3i5t_A 202 FLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTG--FGRCGEWFASEKV 279 (476)
T ss_dssp HHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTT--TTTTSSSCHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccC--CccccCceeeecc
Confidence 789999987432 36789999999999998766 99999999999999999999984 67877653 45 7
Q ss_pred cCCCCCccEEEecCcccccCCc----cEEeeC
Q 019931 307 FNCERDVDICVGTLSKAAGCQG----GFIACR 334 (334)
Q Consensus 307 ~~~~~~~Div~~SlsKa~G~~G----G~i~~~ 334 (334)
+++.| ||+ ||||++|+ | |+++++
T Consensus 280 ~~v~p--di~--t~sK~l~~-G~~plg~v~~~ 306 (476)
T 3i5t_A 280 FGVVP--DII--TFAKGVTS-GYVPLGGLAIS 306 (476)
T ss_dssp TCCCC--SEE--EECGGGGT-TSSCCEEEEEC
T ss_pred cCCCc--chh--hhhhhhcC-CCcCeEEEEEC
Confidence 78776 455 79999985 4 666653
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-24 Score=212.19 Aligned_cols=200 Identities=17% Similarity=0.164 Sum_probs=152.5
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC-CCcEEEeccHHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK-KEDCLLCPTGFAA 177 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g-~e~alv~~sG~~A 177 (334)
.+|.+|++||||+++ ..||. +||+|++|+.+. ..+.. +.+.+....+|+++|+++++ .+.+++++||++|
T Consensus 81 l~D~dG~~ylD~~~g~~~~~lGH-~hp~v~~Av~~q~~~~~~----~~~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA 155 (454)
T 4ao9_A 81 LWDADGHRYADFIAEYTAGVYGH-SAPEIRDAVIEAMQGGIN----LTGHNLLEGRLARLICERFPQIEQLRFTNSGTEA 155 (454)
T ss_dssp EEETTCCEEEESSGGGGTTTTCS-CCHHHHHHHHHHHHTCSC----CCSEESSHHHHHHHHHHHSTTCSEEEEESSHHHH
T ss_pred EEECCCCEEEEccccHHhhcccC-CCHHHHHHHHHHHhcCCC----ccCCcHHHHHHHHHHHHhCCCCCEEEEeCchHHH
Confidence 357888999999774 44666 599999987543 23321 23345667889999999885 5778888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHh-hhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEE
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIA-ERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVV 256 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls-~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lV 256 (334)
|+.+|+..... +++..+|..+..+|+......... .......+..+++||++.+++++++..++..+|
T Consensus 156 ~e~AiklAr~~-----------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~~~l~~~l~~~~~~iAav 224 (454)
T 4ao9_A 156 NLMALTAALHF-----------TGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDAQTARAQIERHGPEIAVV 224 (454)
T ss_dssp HHHHHHHHHHH-----------HTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCHHHHHHHHHHTGGGEEEE
T ss_pred HHHHHHHHHhc-----------ccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCchHHHHHHHHhhcCCceEEE
Confidence 99999975542 345778888888998643221111 111134677889999999999998766678899
Q ss_pred EEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEecCcccccC
Q 019931 257 VTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 257 v~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++|+++++.|.+.| |++|+++|++||++||+||+|+ |++|.++ .+++++.|| |+ ||+|++|.
T Consensus 225 IvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t----GR~G~~~a~e~~gv~PD--i~--t~gK~lgg 291 (454)
T 4ao9_A 225 LVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT----SRLAPHGLANKLGIRSD--LT--TLGKYIGG 291 (454)
T ss_dssp EECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG----GGGSTTCHHHHHTCCCS--EE--EEEGGGGT
T ss_pred EeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc----CCCccccchhccCCCCc--EE--EeccccCC
Confidence 99999999999888 9999999999999999999997 4566665 478999884 55 89999964
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.5e-24 Score=208.76 Aligned_cols=218 Identities=15% Similarity=0.106 Sum_probs=154.6
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~A 177 (334)
++.+|++||||+++ ++||+ .||+|++|+.+. ..+...+....+..+.+.+|+++|+++++ .+++++++||++|
T Consensus 46 ~d~~G~~~lD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA 124 (460)
T 3gju_A 46 WDNNGRKSIDAFAGLYCVNVGY-GRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDA 124 (460)
T ss_dssp EETTCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHH
T ss_pred EECCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHH
Confidence 45678999999987 66887 489999976542 22222234455567888999999999984 5678999999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc----------CCcEEEE----eeCCC-----
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT----------KMVEVFV----YKHCD----- 238 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~----------~g~~v~~----~~~~D----- 238 (334)
|..+++++...... .+ ..+++.+|+.+..+|+.......+.... .+...+. |+++|
T Consensus 125 ~~~al~~~~~~~~~--~g---~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 199 (460)
T 3gju_A 125 NETNIKLIWYYNNV--LG---RPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSE 199 (460)
T ss_dssp HHHHHHHHHHHHHH--TT---CTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCH
T ss_pred HHHHHHHHHHHHHh--cC---CCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccCh
Confidence 99999987652000 00 0124667778899999887776654210 0122222 22344
Q ss_pred -------HHHHHHHHhcCC-CCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-cc
Q 019931 239 -------MSHLKTLLSCCT-MRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AE 305 (334)
Q Consensus 239 -------~~~Le~~l~~~~-~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~ 305 (334)
+++||+++++.. +++++|++|+++|++|.+.| |++|+++|++||++||+||+|+. +|++|..+ .+
T Consensus 200 ~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g--~gr~g~~~~~~ 277 (460)
T 3gju_A 200 EQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTG--FGRLGTMFGSD 277 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTT--TTTTSSSCHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--CCcccccchHh
Confidence 689999887422 36789999999999998777 99999999999999999999983 56766433 56
Q ss_pred ccCCCCCccEEEecCcccccCC---ccEEee
Q 019931 306 QFNCERDVDICVGTLSKAAGCQ---GGFIAC 333 (334)
Q Consensus 306 ~~~~~~~~Div~~SlsKa~G~~---GG~i~~ 333 (334)
++++.+ |++ ||||++++- -|++++
T Consensus 278 ~~~~~p--di~--t~sK~l~gG~~~lg~v~~ 304 (460)
T 3gju_A 278 HYGIKP--DLI--TIAKGLTSAYAPLSGVIV 304 (460)
T ss_dssp HHTCCC--SEE--EECGGGTTTSSCCEEEEE
T ss_pred hcCCCC--Cee--eeehhhcCCCCCeEEEEE
Confidence 777766 444 799999752 266665
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-23 Score=195.17 Aligned_cols=209 Identities=12% Similarity=0.071 Sum_probs=157.8
Q ss_pred hhcccceeEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHH
Q 019931 103 TFARQFKRLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAA 177 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~A 177 (334)
.++.+|+++|||..++ ..+..+|.|++++.+.- .+..++... ..++.+++++.+++.+| .+.++++++|++|
T Consensus 21 ~~d~~g~~~i~~~~~~-~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a 97 (391)
T 3dzz_A 21 KWGVLKEKELPMWIAE-MDFKIAPEIMASMEEKLKVAAFGYESV--PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPA 97 (391)
T ss_dssp TTTTCCTTCEECCSSC-CSSCCCHHHHHHHHHHHTTCCCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHH
T ss_pred ceeccCCCceeccccC-CCCCCCHHHHHHHHHHHhcCcCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHH
Confidence 3567779999999886 67778999999886643 222222111 35666777777777776 3568888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC--------CCHHHHHHHHhcC
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH--------CDMSHLKTLLSCC 249 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~--------~D~~~Le~~l~~~ 249 (334)
+..++.++.++ +|.|++..+.|.++...++.. +.+++.++. .|+++|++++++
T Consensus 98 ~~~~~~~l~~~--------------gd~vl~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~d~~~l~~~l~~- 158 (391)
T 3dzz_A 98 ISAMVRQFTSP--------------GDQILVQEPVYNMFYSVIEGN----GRRVISSDLIYENSKYSVNWADLEEKLAT- 158 (391)
T ss_dssp HHHHHHHHSCT--------------TCEEEECSSCCHHHHHHHHHT----TCEEEECCCEEETTEEECCHHHHHHHHTS-
T ss_pred HHHHHHHhCCC--------------CCeEEECCCCcHHHHHHHHHc----CCEEEEeeeeecCCceeecHHHHHHHHhc-
Confidence 99999988754 788999999999988888766 888888876 589999999974
Q ss_pred CCCcEEEEEcCCCCCCCCc---cCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCccccc
Q 019931 250 TMRKKVVVTDSLFSMDGDF---APMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAG 325 (334)
Q Consensus 250 ~~~~~lVv~e~v~n~~G~~---~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G 325 (334)
+++++|++++++|++|.+ .++++|+++|++||++||+||+|+.+.++.........+... ++..|++.||||++|
T Consensus 159 -~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g 237 (391)
T 3dzz_A 159 -PSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFN 237 (391)
T ss_dssp -TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHT
T ss_pred -cCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhcc
Confidence 378999999999999998 568999999999999999999999765432111111122211 233499999999998
Q ss_pred CCc---cEEeeC
Q 019931 326 CQG---GFIACR 334 (334)
Q Consensus 326 ~~G---G~i~~~ 334 (334)
+.| |+++++
T Consensus 238 ~~G~r~G~~~~~ 249 (391)
T 3dzz_A 238 LAALHAACAIIP 249 (391)
T ss_dssp CTTTCCEEEECC
T ss_pred ccchhheEEEEC
Confidence 766 888763
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=205.22 Aligned_cols=208 Identities=13% Similarity=0.085 Sum_probs=152.2
Q ss_pred hcccceeEEEeecCc---cCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHh-CCCcEEEeccHHHHH
Q 019931 104 FARQFKRLLLFSGND---YLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLK-KKEDCLLCPTGFAAN 178 (334)
Q Consensus 104 ~~~~g~~~l~f~sn~---yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~-g~e~alv~~sG~~An 178 (334)
++.+|++||||+++. +||+ .||+|++|+.+.- .+.. .....+...+|+++|++++ +.+++++++||++||
T Consensus 48 ~d~~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~ 122 (429)
T 3k28_A 48 YDIDGNEYIDYVLSWGPLIHGH-ANDRVVEALKAVAERGTS----FGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEAT 122 (429)
T ss_dssp EETTCCEEEESCGGGTTCTTCB-SCHHHHHHHHHHHHHCSC----CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHH
T ss_pred EECCCCEEEECCCChhhcccCC-CCHHHHHHHHHHHhhCcC----cCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHH
Confidence 456789999999974 5676 6999999876532 2211 1233577899999999998 567889999999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh---------cC------CcEEEEeeCCCHHHHH
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER---------TK------MVEVFVYKHCDMSHLK 243 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~---------~~------g~~v~~~~~~D~~~Le 243 (334)
..+++++.... +++.+|+.+..+|+.....+..... .. ...++.++++|+++||
T Consensus 123 ~~ai~~a~~~~-----------~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 191 (429)
T 3k28_A 123 MSALRLARGYT-----------GRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVK 191 (429)
T ss_dssp HHHHHHHHHHH-----------TCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHH
T ss_pred HHHHHHHHHhh-----------CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHH
Confidence 99998765421 2356677788888765332211100 00 1256778889999999
Q ss_pred HHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEe
Q 019931 244 TLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVG 318 (334)
Q Consensus 244 ~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~ 318 (334)
+++++.+.++++|+++++++++|.+.| +++|+++|++||++||+||+|. |+ ++|... .+++++.+ |+ .
T Consensus 192 ~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~--~~g~~~~~~~~~~~~--di--~ 264 (429)
T 3k28_A 192 YAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMT-GF--RVAYNCGQGYYGVTP--DL--T 264 (429)
T ss_dssp HHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TT--TSSTTHHHHHHTCCC--SE--E
T ss_pred HHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-cc--ccCcchHHHHhCCCC--ce--e
Confidence 999754346789999999999999988 9999999999999999999996 53 556543 45677655 44 4
Q ss_pred cCcccccC--CccEEeeC
Q 019931 319 TLSKAAGC--QGGFIACR 334 (334)
Q Consensus 319 SlsKa~G~--~GG~i~~~ 334 (334)
||||+||+ ..|+++++
T Consensus 265 t~sK~~~~G~~iG~~~~~ 282 (429)
T 3k28_A 265 CLGKVIGGGLPVGAYGGK 282 (429)
T ss_dssp EECGGGGTTSCCEEEEEC
T ss_pred hhhhhhcCCCCeEEEEEc
Confidence 89999975 34777653
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=201.31 Aligned_cols=207 Identities=19% Similarity=0.187 Sum_probs=153.0
Q ss_pred cccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHH
Q 019931 105 ARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMA 180 (334)
Q Consensus 105 ~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ 180 (334)
+.+|++|+||+++ +++|+ .+|++++++.++- .....++.+ ..+...+++++|++++|.+++++++||++|+..
T Consensus 36 d~~g~~~ld~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~ 112 (397)
T 2ord_A 36 DEKGNAYLDFTSGIAVNVLGH-SHPRLVEAIKDQAEKLIHCSNLF--WNRPQMELAELLSKNTFGGKVFFANTGTEANEA 112 (397)
T ss_dssp ETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCSCCCTTS--EEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHH
T ss_pred ECCCCEEEECCccccccccCC-CCHHHHHHHHHHHHhcccCcccc--CCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHH
Confidence 4567999999998 89999 7999999775432 111111211 357889999999999999889999999999999
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcE------------EEEeeCCCHHHHHHHHhc
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVE------------VFVYKHCDMSHLKTLLSC 248 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~------------v~~~~~~D~~~Le~~l~~ 248 (334)
+++++...... . ..+++++|+.+..+|+++...+.+. +.+ ++.++++|+++|++++++
T Consensus 113 al~~~~~~~~~-~-----~~~~~~vi~~~~~yh~~~~~~~~~~----g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~ 182 (397)
T 2ord_A 113 AIKIARKYGKK-K-----SEKKYRILSAHNSFHGRTLGSLTAT----GQPKYQKPFEPLVPGFEYFEFNNVEDLRRKMSE 182 (397)
T ss_dssp HHHHHHHHHHH-H-----CTTCCEEEEEBTCCCCSSHHHHHHS----BCHHHHGGGCSCCTTEEEECTTCHHHHHHHCCT
T ss_pred HHHHHHHHhhc-C-----CCCCceEEEEcCCcCCCchhhhhcc----CChhhccccCCCCCCeeEecCCCHHHHHHHhhc
Confidence 99887531000 0 0013567778888998877666665 333 777888999999999864
Q ss_pred CCCCcEEEEEcCCCCCCCC-c---cCHHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCccc
Q 019931 249 CTMRKKVVVTDSLFSMDGD-F---APMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKA 323 (334)
Q Consensus 249 ~~~~~~lVv~e~v~n~~G~-~---~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa 323 (334)
++++|++++++|++|. + .++++|+++|++||++||+||+|+ | +++.|..+. ..++.. .|++ ||||+
T Consensus 183 ---~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~~~~~~~--~d~~--s~sK~ 253 (397)
T 2ord_A 183 ---DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQC-G-MGRTGKLFAYQKYGVV--PDVL--TTAKG 253 (397)
T ss_dssp ---TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSHHHHHTCC--CSEE--EECGG
T ss_pred ---CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CccCccchhhhhhCCC--CCee--eeccc
Confidence 7899999999999998 3 568999999999999999999997 5 565555432 344543 4655 88999
Q ss_pred ccC--CccEEee
Q 019931 324 AGC--QGGFIAC 333 (334)
Q Consensus 324 ~G~--~GG~i~~ 333 (334)
||+ ..|++++
T Consensus 254 ~~~G~r~G~~~~ 265 (397)
T 2ord_A 254 LGGGVPIGAVIV 265 (397)
T ss_dssp GGTTSCCEEEEE
T ss_pred cCCCcCeEEEEE
Confidence 984 1255554
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-23 Score=198.09 Aligned_cols=214 Identities=19% Similarity=0.152 Sum_probs=150.0
Q ss_pred cccceeEEEeecCc---cCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHH
Q 019931 105 ARQFKRLLLFSGND---YLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMA 180 (334)
Q Consensus 105 ~~~g~~~l~f~sn~---yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ 180 (334)
+.+|++|+||++|. .||+ .||+|++++.+.- ....+++. +..+.+.+++++|++++|.+.+++++||++||..
T Consensus 32 d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~~ 108 (392)
T 3ruy_A 32 DPEGNRYMDLLSAYSAVNQGH-RHPKIINALIDQANRVTLTSRA--FHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVET 108 (392)
T ss_dssp CTTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCSCCCTT--SEETTHHHHHHHHHHHHTCSEEEEESSHHHHHHH
T ss_pred eCCCCEEEEcCCChhhhccCC-CCHHHHHHHHHHHHhccccccc--cCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHH
Confidence 45679999999871 2455 5899999886542 22222222 3467789999999999999999999999999999
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcC-CCchhhHHHHHHhhhc--------CCcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDA-LNHASIIDGIRIAERT--------KMVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~-~~H~s~~~g~~ls~~~--------~g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
+++++..++.. ..+ ...+++.|++.. .+|........+.... ....+..++++|+++|++++++
T Consensus 109 al~~~~~~~~~-~~~---~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--- 181 (392)
T 3ruy_A 109 AIKTARRWAYD-VKK---VEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAITP--- 181 (392)
T ss_dssp HHHHHHHHHHH-TSC---CCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTCHHHHHHHCCT---
T ss_pred HHHHHHHhhhh-ccC---CCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcccHHHHHHHhcc---
Confidence 99976543000 000 001245566544 4555554444432100 0123677888999999999873
Q ss_pred CcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccccC
Q 019931 252 RKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++|++++++|++|.+.| +++|+++|++||++||+||+|+ + +|++|..+. ..+++.+ |++ ||||++++
T Consensus 182 ~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~-~~~~g~~~~~~~~~~~~--d~~--~~SK~l~g 255 (392)
T 3ruy_A 182 NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQT-G-LGRTGKVFACDWDNVTP--DMY--ILGKALGG 255 (392)
T ss_dssp TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTT-T-TTTTSSSSGGGGGTCCC--SEE--EECGGGGT
T ss_pred CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechh-C-CCccccchhhhccCCCC--CEE--EEchhhhC
Confidence 7899999999999999998 9999999999999999999996 3 555565543 3445433 555 88999965
Q ss_pred ---CccEEeeC
Q 019931 327 ---QGGFIACR 334 (334)
Q Consensus 327 ---~GG~i~~~ 334 (334)
.+|+++++
T Consensus 256 G~~~~G~~~~~ 266 (392)
T 3ruy_A 256 GVFPISCAAAN 266 (392)
T ss_dssp TTSCCEEEEEC
T ss_pred ChhhhEEEEEC
Confidence 35787764
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.5e-24 Score=209.72 Aligned_cols=217 Identities=13% Similarity=0.079 Sum_probs=154.9
Q ss_pred hcc-cce--eEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccH
Q 019931 104 FAR-QFK--RLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTG 174 (334)
Q Consensus 104 ~~~-~g~--~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG 174 (334)
++. +|+ +||||+|+ ++||+ +||+|++|+.+.- .....+ +..+..+...+|+++|+++++ .+++++++||
T Consensus 67 ~d~~dG~~~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~~~~~~~~~-~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sG 144 (457)
T 3tfu_A 67 TLIRDGQPIEVLDAMSSWWTAIHGH-GHPALDQALTTQLRVMNHVM-FGGLTHEPAARLAKLLVDITPAGLDTVFFSDSG 144 (457)
T ss_dssp EEEETTEEEEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCSCCC-SSSEECHHHHHHHHHHHHHSSTTEEEEEEESSH
T ss_pred EEccCCCeeEEEECCCcHhhhccCC-CCHHHHHHHHHHHHhccCcc-ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcH
Confidence 467 899 99999996 67898 7999999775432 211111 122346788999999999995 5678999999
Q ss_pred HHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh-----------cCCcEEEEee-----CCC
Q 019931 175 FAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER-----------TKMVEVFVYK-----HCD 238 (334)
Q Consensus 175 ~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~-----------~~g~~v~~~~-----~~D 238 (334)
++||..+++++...... .+ ..++..+|..+..+|+.....+.+... ..+...+.++ ++|
T Consensus 145 seA~~~Alk~a~~~~~~--~g---~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d 219 (457)
T 3tfu_A 145 SVSVEVAAKMALQYWRG--RG---LPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAY 219 (457)
T ss_dssp HHHHHHHHHHHHHHHHH--TT---CTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHh--cC---CCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHH
Confidence 99999999987652000 00 012456777899999987766554210 0012222221 158
Q ss_pred HHHHHHHHhcCCCCcEEEEEcC-CCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCC
Q 019931 239 MSHLKTLLSCCTMRKKVVVTDS-LFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERD 312 (334)
Q Consensus 239 ~~~Le~~l~~~~~~~~lVv~e~-v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~ 312 (334)
+++||+++++...++++|++|+ ++|++|.+.| |++|+++|++||++||+||+|+. +|++|.++ .+++++.+
T Consensus 220 ~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g--~gr~G~~~a~~~~~~~p- 296 (457)
T 3tfu_A 220 SAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATG--FGRTGALFAADHAGVSP- 296 (457)
T ss_dssp HHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSSSTHHHHTCCC-
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccC--CccccchhHhHhcCCCc-
Confidence 8999999975333689999999 9999998876 99999999999999999999984 67777765 36777766
Q ss_pred ccEEEecCcccccC---CccEEee
Q 019931 313 VDICVGTLSKAAGC---QGGFIAC 333 (334)
Q Consensus 313 ~Div~~SlsKa~G~---~GG~i~~ 333 (334)
|++ ||||++++ ..|++++
T Consensus 297 -dii--t~sK~l~gG~~~lG~v~~ 317 (457)
T 3tfu_A 297 -DIM--CVGKALTGGYLSLAATLC 317 (457)
T ss_dssp -SEE--EECGGGGTTSSCCEEEEE
T ss_pred -eEE--EEChhhhCCCcceEEEEE
Confidence 455 99999965 2356654
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.9e-23 Score=201.35 Aligned_cols=214 Identities=14% Similarity=0.077 Sum_probs=152.8
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCCC-cEEEeccHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKKE-DCLLCPTGFAAN 178 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e-~alv~~sG~~An 178 (334)
++.+|++||||+++ ++||+ .||+|++|+.+. ..+.. ....+..+...+|+++|+++++.+ .+++++||++||
T Consensus 44 ~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~ 120 (452)
T 3n5m_A 44 EDIQGKRYLDGMSGLWCVNSGY-GRKELAEAAYKQLQTLSY--FPMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEAN 120 (452)
T ss_dssp EETTCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHTTCCC--CCTTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHH
T ss_pred EECCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhcCC--cccccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHH
Confidence 35677999999998 88998 499999987654 22222 123455788899999999998743 377889999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc--------CCcEEEEe--------eCCC----
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT--------KMVEVFVY--------KHCD---- 238 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~--------~g~~v~~~--------~~~D---- 238 (334)
..+++++...... + + ..+++.+|+.+..+|+.......+.... ....+... +++|
T Consensus 121 ~~al~~~~~~~~~-~-g---~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (452)
T 3n5m_A 121 ETAFKIARQYYAQ-K-G---EPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENI 195 (452)
T ss_dssp HHHHHHHHHHHHT-T-T---CTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCG
T ss_pred HHHHHHHHHHHHh-c-C---CCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhh
Confidence 9999987632000 0 0 0023567778888998876665543110 00112222 2355
Q ss_pred -----HHHHHHHHh-cCCCCcEEEEEcCC-CCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccc
Q 019931 239 -----MSHLKTLLS-CCTMRKKVVVTDSL-FSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQ 306 (334)
Q Consensus 239 -----~~~Le~~l~-~~~~~~~lVv~e~v-~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~ 306 (334)
+++||++++ ..+.++++|++|++ +| +|.+.| +++|+++|++||++||+||+|+. +|++|..+ .++
T Consensus 196 ~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g--~g~~g~~~~~~~ 272 (452)
T 3n5m_A 196 YDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICG--FGRTGKAFGFMN 272 (452)
T ss_dssp GGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSSSGGGG
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhC--CCcccccchhhh
Confidence 899999997 22236789999999 89 998887 99999999999999999999984 56777654 466
Q ss_pred cCCCCCccEEEecCcccccCCc----cEEee
Q 019931 307 FNCERDVDICVGTLSKAAGCQG----GFIAC 333 (334)
Q Consensus 307 ~~~~~~~Div~~SlsKa~G~~G----G~i~~ 333 (334)
+++.+ |++ ||||++++ | |++++
T Consensus 273 ~~~~~--di~--t~sK~l~~-G~~~ig~~~~ 298 (452)
T 3n5m_A 273 YDVKP--DII--TMAKGITS-AYLPLSATAV 298 (452)
T ss_dssp TTCCC--SEE--EECGGGGT-TSSCCEEEEE
T ss_pred cCCCC--CEE--eecccccC-CCcceEEEEE
Confidence 77665 454 79999986 6 77775
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=191.79 Aligned_cols=204 Identities=17% Similarity=0.117 Sum_probs=158.8
Q ss_pred ccceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHH
Q 019931 106 RQFKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIV 183 (334)
Q Consensus 106 ~~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~ 183 (334)
.+|++++||++|+ ..+..+|.+++++.+.-.....+ ..+...+|+++++++++. +.++++++|++|+..++.
T Consensus 13 ~~~~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~y-----~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~ 86 (354)
T 3ly1_A 13 PSTDNPIRINFNE-NPLGMSPKAQAAARDAVVKANRY-----AKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIE 86 (354)
T ss_dssp CCSSSCEECSSCC-CSSCCCHHHHHHHHHTGGGTTSC-----CHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCCCceEEccCCC-CCCCCCHHHHHHHHHHHhhCcCC-----CCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHH
Confidence 4568999999987 56778999999887654322111 135668999999999995 568888999999999999
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEE
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVT 258 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~ 258 (334)
++.++ ||.|++..+.|.+....++.. |.+++.++.+ |+++|++++++. +++++|++
T Consensus 87 ~l~~~--------------gd~vl~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~d~~~l~~~l~~~-~~~~~v~l 147 (354)
T 3ly1_A 87 AYASL--------------EAQLVIPELTYGDGEHFAKIA----GMKVTKVKMLDNWAFDIEGLKAAVAAY-SGPSIVYL 147 (354)
T ss_dssp HHCCT--------------TCEEEEESSSCTHHHHHHHHT----TCEEEEECCCTTSCCCHHHHHHHHHTC-SSCEEEEE
T ss_pred HHhCC--------------CCeEEECCCCchHHHHHHHHc----CCEEEEecCCCCCCCCHHHHHHHhccC-CCCCEEEE
Confidence 88764 788888889998888887766 8899999877 999999999742 26899998
Q ss_pred cCCCCCCCCccCHHHHHHHHHH--cCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEee
Q 019931 259 DSLFSMDGDFAPMVELVKLRRK--YGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 259 e~v~n~~G~~~pL~~L~ela~k--~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
++++||+|.+.|+++|.++++. +|+++|+||+|+.+.++..........+...+.+++++||||++|..| ||+++
T Consensus 148 ~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 227 (354)
T 3ly1_A 148 VNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVA 227 (354)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEEC
T ss_pred eCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeec
Confidence 9999999999998888888887 999999999999655433222322222212145699999999998666 88876
Q ss_pred C
Q 019931 334 R 334 (334)
Q Consensus 334 ~ 334 (334)
+
T Consensus 228 ~ 228 (354)
T 3ly1_A 228 H 228 (354)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.6e-23 Score=201.15 Aligned_cols=219 Identities=17% Similarity=0.142 Sum_probs=155.5
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~A 177 (334)
++.+|++||||+++ ++||++ ||+|++|+.+. ..+...+....+..+...+|+++|+++++ .+++++++||++|
T Consensus 45 ~d~~g~~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA 123 (459)
T 4a6r_A 45 WDSEGNKIIDGMAGLWCVNVGYG-RKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSES 123 (459)
T ss_dssp EETTCCEEEETTHHHHTCTTCBC-CHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHH
T ss_pred EECCCCEEEECCCchhcccCCCC-CHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHH
Confidence 45778999999986 568884 89999977543 22221233344567888999999999985 5778999999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC----------CcEEEEeeC----C---C--
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK----------MVEVFVYKH----C---D-- 238 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~----------g~~v~~~~~----~---D-- 238 (334)
|..+++++...... .+ ..+++.+|+.+..+|+.......+..... +...+.++. + |
T Consensus 124 ~~~al~~~~~~~~~--~g---~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~ 198 (459)
T 4a6r_A 124 VDTMIRMVRRYWDV--QG---KPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPD 198 (459)
T ss_dssp HHHHHHHHHHHHHH--TT---CTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHH
T ss_pred HHHHHHHHHHHHHh--cC---CCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHH
Confidence 99999987752100 00 00235677788899988766665532110 122222222 3 2
Q ss_pred ------HHHHHHHHhcCC-CCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccc
Q 019931 239 ------MSHLKTLLSCCT-MRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQ 306 (334)
Q Consensus 239 ------~~~Le~~l~~~~-~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~ 306 (334)
+++||+++++.. .++++|++|++++++|.+.| |++|+++|++||++||+||+|+. +|++|..+ .++
T Consensus 199 ~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g--~gr~G~~~~~~~ 276 (459)
T 4a6r_A 199 EFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICG--FGRTGEWFGHQH 276 (459)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTT--TTTTSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC--CCcccccchHhh
Confidence 788999887432 36789999999999999887 99999999999999999999984 67777543 467
Q ss_pred cCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 307 FNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 307 ~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
+++.+ ||+ ||||++++-| |+++++
T Consensus 277 ~~~~p--di~--t~sK~l~gg~~~lg~v~~~ 303 (459)
T 4a6r_A 277 FGFQP--DLF--TAAKGLSSGYLPIGAVFVG 303 (459)
T ss_dssp HTCCC--SEE--EECGGGGTTSSCCEEEEEC
T ss_pred cCCCC--Cee--ehhhhhcCCCCCccceeeC
Confidence 77766 454 7999997643 777654
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-24 Score=204.13 Aligned_cols=200 Identities=16% Similarity=0.080 Sum_probs=150.7
Q ss_pred eeEEE-eecCccCCCCCCHHHHHHHHHhcC--CCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHH
Q 019931 109 KRLLL-FSGNDYLGLSSHPTIAKAAARHGM--GPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAV 185 (334)
Q Consensus 109 ~~~l~-f~sn~yLgl~~~p~v~~a~~~~g~--g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al 185 (334)
|+++| |++|+|||+++||.+.+++++... +...++..+|..+.+.+||++|++++|.+..+++++|++|+..++.++
T Consensus 3 ~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~ 82 (357)
T 3lws_A 3 NRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIW 82 (357)
T ss_dssp CHHHHHHHTCSEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH
T ss_pred chhhhHHHhhcccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHH
Confidence 56677 899999999999998886654321 123345566767788999999999999998999999999999999988
Q ss_pred hhhhhhccCCCccCCCCCe--EEEEcCCCchhhHHH---HHHhhhcCCcEEEEeeC----CCHHHHHHHHhcCCCCcEEE
Q 019931 186 GNIASLLAGDEKSFKDEKI--AIFSDALNHASIIDG---IRIAERTKMVEVFVYKH----CDMSHLKTLLSCCTMRKKVV 256 (334)
Q Consensus 186 ~~~~~~~~~~~~~~~~~gd--~Vl~d~~~H~s~~~g---~~ls~~~~g~~v~~~~~----~D~~~Le~~l~~~~~~~~lV 256 (334)
..+ +| +|+++..+|.+.... ..+. +++++.++. .|+++|+++. ++++|
T Consensus 83 ~~~--------------gd~~~vi~~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~d~~~l~~~~-----~~~~v 139 (357)
T 3lws_A 83 SDE--------------TDNRTVAYHPLCHLEIHEQDGLKELH----PIETILVGAADRLMTLDEIKALP-----DIACL 139 (357)
T ss_dssp HHH--------------HTCCEEEECTTCHHHHSSTTHHHHHS----SCEEEECSCTTSCCCHHHHHTCC-----SCSEE
T ss_pred hhc--------------CCCcEEEecccceeeeeccchhhhcc----CcEEEEecCCCCCcCHHHHhcCc-----CcceE
Confidence 876 34 888888888775442 2233 788887764 2777777651 37899
Q ss_pred EEcCCCCCC-CCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc-cCCccEE
Q 019931 257 VTDSLFSMD-GDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQGGFI 331 (334)
Q Consensus 257 v~e~v~n~~-G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~-G~~GG~i 331 (334)
++++++|++ |.+.| +++|+++|++||++||+|++|..+..+..|...... . ...|+++.|+||+| |+.||++
T Consensus 140 ~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~-~--~~~d~~~~s~sK~~~~~~gg~~ 216 (357)
T 3lws_A 140 LLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEI-A--GLFDSIYISFYKGLGGIAGAIL 216 (357)
T ss_dssp EEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHH-H--TTSSEEEEESSSTTCCSSCEEE
T ss_pred EEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHH-H--hcCCEEEEeccccCCCCceEEE
Confidence 999999987 88776 889999999999999999999743322112222111 1 34578899999999 6788888
Q ss_pred eeC
Q 019931 332 ACR 334 (334)
Q Consensus 332 ~~~ 334 (334)
+++
T Consensus 217 ~~~ 219 (357)
T 3lws_A 217 AGP 219 (357)
T ss_dssp EEC
T ss_pred EcC
Confidence 764
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-23 Score=202.18 Aligned_cols=207 Identities=15% Similarity=0.123 Sum_probs=149.9
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHh-CCCcEEEeccHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLK-KKEDCLLCPTGFAAN 178 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~-g~e~alv~~sG~~An 178 (334)
++.+|++||||+++ ++||+ .||+|++|+.+. ..+.. ..+..+...+|+++|++++ +.+++++++||++|+
T Consensus 50 ~d~~g~~ylD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~ 124 (434)
T 3l44_A 50 WDVDGNKYIDYLAAYGPIITGH-AHPHITKAITTAAENGVL----YGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAV 124 (434)
T ss_dssp EETTCCEEEECCGGGTTCSSCB-TCHHHHHHHHHHHHHCSC----CSSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHH
T ss_pred EECCCCEEEECCCchhccccCC-CCHHHHHHHHHHHHhCcC----CCCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHH
Confidence 45678999999987 45777 699999987653 22211 1234677899999999998 467788999999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh---------cC------CcEEEEeeCCCHHHHH
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER---------TK------MVEVFVYKHCDMSHLK 243 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~---------~~------g~~v~~~~~~D~~~Le 243 (334)
..+++++... ++++.+|+.+..+|+.....+..... .. ...++.++++|+++|+
T Consensus 125 ~~ai~~a~~~-----------~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 193 (434)
T 3l44_A 125 MTTIRVARAY-----------TGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLK 193 (434)
T ss_dssp HHHHHHHHHH-----------HCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHH
T ss_pred HHHHHHHHHh-----------hCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHH
Confidence 9999876542 02356677788888764322211100 00 1256778889999999
Q ss_pred HHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEe
Q 019931 244 TLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVG 318 (334)
Q Consensus 244 ~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~ 318 (334)
+++++.++++++|+++++++++|.+.| +++|+++|++||++||+||+|+ | + ++|... .+++++.+ |+ .
T Consensus 194 ~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~-g-~-~~g~~~~~~~~~~~~--di--~ 266 (434)
T 3l44_A 194 EALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVIT-A-F-RFMYGGAQDLLGVTP--DL--T 266 (434)
T ss_dssp HHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTT-T-T-TSSSSCHHHHHTCCC--SE--E
T ss_pred HHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-c-e-eccccHHHHHcCCCC--Ce--e
Confidence 999754336889999999999999988 9999999999999999999997 4 3 556544 45677765 44 4
Q ss_pred cCcccccC--CccEEee
Q 019931 319 TLSKAAGC--QGGFIAC 333 (334)
Q Consensus 319 SlsKa~G~--~GG~i~~ 333 (334)
||||+||+ .-|++++
T Consensus 267 t~sK~~~~G~~iG~~~~ 283 (434)
T 3l44_A 267 ALGKVIGGGLPIGAYGG 283 (434)
T ss_dssp EEEGGGGTTSSCEEEEE
T ss_pred ehhhhhcCCcCeeeEEE
Confidence 89999974 1256655
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-23 Score=202.91 Aligned_cols=208 Identities=21% Similarity=0.184 Sum_probs=152.3
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHh-CCCcEEEeccHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLK-KKEDCLLCPTGFAAN 178 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~-g~e~alv~~sG~~An 178 (334)
++.+|++||||+++ +++|+ .||+|++++.+. ..+. . ..+..+...+++++|++++ +.+++++++||++||
T Consensus 51 ~d~~g~~~lD~~~~~~~~~lG~-~~~~v~~a~~~~~~~~~-~---~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~ 125 (434)
T 2epj_A 51 YTVDGARIVDLVLAYGPLILGH-KHPRVLEAVEEALARGW-L---YGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEAT 125 (434)
T ss_dssp EETTCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHHTCS-C---CSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHH
T ss_pred EECCCCEEEEcccchhcccCCC-CCHHHHHHHHHHHHhCC-C---CCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHH
Confidence 35677999999987 68899 799999987654 2332 1 1234678899999999999 788899999999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhh---------hcCC------cEEEEeeCCCHHHHH
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE---------RTKM------VEVFVYKHCDMSHLK 243 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~---------~~~g------~~v~~~~~~D~~~Le 243 (334)
..++++...- ++++++|+.+..+|+.....+.+.. ...+ .+++.++++|+++|+
T Consensus 126 ~~al~~ar~~-----------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le 194 (434)
T 2epj_A 126 MTAIRLARGY-----------TGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALE 194 (434)
T ss_dssp HHHHHHHHHH-----------HCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHHHH
T ss_pred HHHHHHHHHh-----------hCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHHHH
Confidence 9999863110 1246788888888874321110000 0012 246778889999999
Q ss_pred HHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcc-cccccCCCCCccEEEe
Q 019931 244 TLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG-VAEQFNCERDVDICVG 318 (334)
Q Consensus 244 ~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g-~~~~~~~~~~~Div~~ 318 (334)
+++++...++++|+++++++++|.+.| +++|+++|++||++||+||+|+ |+ +.|.. ..+++++.+ |+ .
T Consensus 195 ~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~--~~g~~~~~~~~~~~~--di--~ 267 (434)
T 2epj_A 195 RVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GF--RLGLEGAQGYFNIEG--DI--I 267 (434)
T ss_dssp HHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TT--TSSTTHHHHHHTCCC--SE--E
T ss_pred HHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ce--eCCcchhhHHhCCCC--Ce--e
Confidence 999753236789999999999999888 9999999999999999999999 53 33433 345666655 55 4
Q ss_pred cCcccccC--CccEEeeC
Q 019931 319 TLSKAAGC--QGGFIACR 334 (334)
Q Consensus 319 SlsKa~G~--~GG~i~~~ 334 (334)
||||++|+ .+|+++++
T Consensus 268 s~sK~l~~G~~~G~v~~~ 285 (434)
T 2epj_A 268 VLGKIIGGGFPVGAVAGS 285 (434)
T ss_dssp EEEGGGGTTSSCEEEEEC
T ss_pred eecchhcCCcceeeeeec
Confidence 99999986 55888764
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=195.88 Aligned_cols=213 Identities=18% Similarity=0.172 Sum_probs=153.6
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
++.+|++|+||+++ +++|+ .||++++++.+.- .....+... ..+.+.+++++|+++++.+++++++||++|+.
T Consensus 34 ~~~~g~~~lD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~ 110 (406)
T 4adb_A 34 WDQQGKEYIDFAGGIAVNALGH-AHPELREALNEQASKFWHTGNGY--TNEPVLRLAKKLIDATFADRVFFCNSGAEANE 110 (406)
T ss_dssp EETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCSCCCTTS--CCHHHHHHHHHHHHHSSCSEEEEESSHHHHHH
T ss_pred EeCCCCEEEECCCchhhcccCC-CCHHHHHHHHHHHHhcccccCCc--CCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHH
Confidence 35677999999998 89999 7999999886643 222111111 35778999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh--------cCCcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER--------TKMVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~--------~~g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
.+++++....... + ..+++.+|+.+..+|........+... .....+..++++|+++|++++++
T Consensus 111 ~al~~~~~~~~~~--~---~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--- 182 (406)
T 4adb_A 111 AALKLARKFAHDR--Y---GSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALIDD--- 182 (406)
T ss_dssp HHHHHHHHHHHHH--T---CTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTCST---
T ss_pred HHHHHHHHHHHhc--C---CCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHHHhcC---
Confidence 9999875410000 0 002356777888888887666655421 01246778888999999998863
Q ss_pred CcEEEEEcCCCCCCCCc-----cCHHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCccccc
Q 019931 252 RKKVVVTDSLFSMDGDF-----APMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~-----~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G 325 (334)
++++|+++ +.|++|.+ .++++|.++|++||++||+||+|+ + ++++|..+. ..+++.+ |++ ||||+||
T Consensus 183 ~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~~~~~~~~--d~~--t~sK~~~ 255 (406)
T 4adb_A 183 STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT-G-VGRTGELYAYMHYGVTP--DLL--TTAKALG 255 (406)
T ss_dssp TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSHHHHHTCCC--SEE--EECGGGG
T ss_pred CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCccchhHHHHhcCCCC--CEE--Eechhhc
Confidence 78999999 55666643 459999999999999999999998 4 566665542 4455544 555 7899998
Q ss_pred C--CccEEeeC
Q 019931 326 C--QGGFIACR 334 (334)
Q Consensus 326 ~--~GG~i~~~ 334 (334)
+ .+|+++++
T Consensus 256 ~G~r~G~~~~~ 266 (406)
T 4adb_A 256 GGFPVGALLAT 266 (406)
T ss_dssp TTSCCEEEEEC
T ss_pred CCCCeEEEEEc
Confidence 4 24787754
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-22 Score=196.15 Aligned_cols=208 Identities=16% Similarity=0.165 Sum_probs=149.9
Q ss_pred hcccceeEEEeecCc---cCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC-CCcEEEeccHHHHH
Q 019931 104 FARQFKRLLLFSGND---YLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK-KEDCLLCPTGFAAN 178 (334)
Q Consensus 104 ~~~~g~~~l~f~sn~---yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g-~e~alv~~sG~~An 178 (334)
++.+|++||||+++. .||+ .||+|++|+.+.- .+.. .....+...+|+++|+++++ .+++++++||++||
T Consensus 48 ~d~~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~----~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~ 122 (429)
T 4e77_A 48 FDVDGKAYIDYVGSWGPMILGH-NHPAIRQAVIEAVERGLS----FGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEAT 122 (429)
T ss_dssp EETTCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHTTCSC----CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHH
T ss_pred EECCCCEEEECCCchhccccCC-CCHHHHHHHHHHHHhCcc----cCCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHH
Confidence 456789999999874 4666 5999999886543 3221 12245788999999999984 67789999999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhh--------h-------cCCcEEEEeeCCCHHHHH
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE--------R-------TKMVEVFVYKHCDMSHLK 243 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~--------~-------~~g~~v~~~~~~D~~~Le 243 (334)
..+++.+... ++++.+|..+..+|+.....+.... . .....+..++++|+++|+
T Consensus 123 ~~al~~a~~~-----------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 191 (429)
T 4e77_A 123 MSAIRLARGY-----------TGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVR 191 (429)
T ss_dssp HHHHHHHHHH-----------HCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHH
T ss_pred HHHHHHHHHh-----------hCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHH
Confidence 9999864431 1246778888888887653221110 0 001245677889999999
Q ss_pred HHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEe
Q 019931 244 TLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVG 318 (334)
Q Consensus 244 ~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~ 318 (334)
+++++.++++++|+++++++++|.+.| +++|+++|++||++||+||+|+ |+ ++|... .+++++.+ |+ .
T Consensus 192 ~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~--r~g~~~~~~~~~~~p--di--~ 264 (429)
T 4e77_A 192 QAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMT-GF--RVALAGAQDYYHVIP--DL--T 264 (429)
T ss_dssp HHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTT-BT--TTBTTCHHHHTTCCC--SE--E
T ss_pred HHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Cc--ccCcchHHHhcCCCC--Ce--e
Confidence 999865457889999999999999888 9999999999999999999999 43 445433 46677665 44 4
Q ss_pred cCcccccC--CccEEeeC
Q 019931 319 TLSKAAGC--QGGFIACR 334 (334)
Q Consensus 319 SlsKa~G~--~GG~i~~~ 334 (334)
||||+||+ ..|+++++
T Consensus 265 t~sK~~~~G~~~G~~~~~ 282 (429)
T 4e77_A 265 CLGKIIGGGMPVGAFGGR 282 (429)
T ss_dssp EEEGGGGTTSCCEEEEEC
T ss_pred eecccccCCCCeEEEEEC
Confidence 99999974 34777653
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=197.52 Aligned_cols=208 Identities=19% Similarity=0.187 Sum_probs=152.5
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC-CCcEEEeccHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK-KEDCLLCPTGFAAN 178 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g-~e~alv~~sG~~An 178 (334)
++.+|++||||+++ +.||+ .||+|++|+.+.- .+.. .....+...+|+++|+++++ .+++++++||++|+
T Consensus 47 ~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~----~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~ 121 (427)
T 3fq8_A 47 WDVDGNRYIDYVGTWGPAICGH-AHPEVIEALKVAMEKGTS----FGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEAC 121 (427)
T ss_dssp EETTSCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHTTCSC----CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHH
T ss_pred EECCCCEEEECCCchhhhccCC-CCHHHHHHHHHHHHhCCC----cCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHH
Confidence 45678999999987 56777 6999999886543 2221 12256888999999999984 67788899999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHh---------hhcC------CcEEEEeeCCCHHHHH
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIA---------ERTK------MVEVFVYKHCDMSHLK 243 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls---------~~~~------g~~v~~~~~~D~~~Le 243 (334)
..+++.+... ++++++|+.+..+|+......... .... ...++.++++|+++||
T Consensus 122 ~~al~~a~~~-----------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 190 (427)
T 3fq8_A 122 MAVLRIMRAY-----------TGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVK 190 (427)
T ss_dssp HHHHHHHHHH-----------HCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHH
T ss_pred HHHHHHHHHh-----------hCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHH
Confidence 9999754321 124677888888887543211110 0000 1236778899999999
Q ss_pred HHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcc-cccccCCCCCccEEEe
Q 019931 244 TLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG-VAEQFNCERDVDICVG 318 (334)
Q Consensus 244 ~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g-~~~~~~~~~~~Div~~ 318 (334)
+++++.+.++++|+++++++++|.+.| +++|+++|++||++||+||+|+ |+ +.|.. ..+++++.+ |+ .
T Consensus 191 ~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~--~~g~~~~~~~~~~~~--di--~ 263 (427)
T 3fq8_A 191 ALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVIT-GF--RIAYGGVQEKFGVTP--DL--T 263 (427)
T ss_dssp HHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BT--TTBTTHHHHHTTCCC--SE--E
T ss_pred HHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-cc--ccCcchhhHhcCCCC--Ch--h
Confidence 999875557899999999999999999 9999999999999999999998 53 44543 345667655 44 5
Q ss_pred cCcccccC--CccEEeeC
Q 019931 319 TLSKAAGC--QGGFIACR 334 (334)
Q Consensus 319 SlsKa~G~--~GG~i~~~ 334 (334)
||||+||+ ..|+++++
T Consensus 264 t~sK~~~~G~~~G~~~~~ 281 (427)
T 3fq8_A 264 TLGKIIGGGLPVGAYGGK 281 (427)
T ss_dssp EECGGGGTTSSCEEEEEC
T ss_pred hhhhhhhCCcceEEEEEc
Confidence 89999974 34777653
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=198.15 Aligned_cols=212 Identities=13% Similarity=0.093 Sum_probs=150.4
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhC---CCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKK---KEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g---~e~alv~~sG~~A 177 (334)
++.+|++||||+++ ..||+ +||+|++|+.+.-.....+....+..+...+|+++|+++++ .+++++++||++|
T Consensus 56 ~d~~g~~ylD~~~~~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA 134 (451)
T 3oks_A 56 EDVDGNRLIDLGSGIAVTTVGN-SAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEA 134 (451)
T ss_dssp EETTSCEEEESSHHHHTCTTCT-TCHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHH
T ss_pred EECCCCEEEEcCCCccccccCC-CCHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHH
Confidence 56788999999986 45776 49999998765432112222334567888999999999986 3578999999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc---------CCcEEEEeeCC-----------
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT---------KMVEVFVYKHC----------- 237 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~---------~g~~v~~~~~~----------- 237 (334)
|..+++++... ++++.+|..+..+|+.......+.... ....+..++.+
T Consensus 135 ~~~Alk~a~~~-----------~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 203 (451)
T 3oks_A 135 VENAVKIARSH-----------THKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKE 203 (451)
T ss_dssp HHHHHHHHHHH-----------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTT
T ss_pred HHHHHHHHHHh-----------cCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccc
Confidence 99999876541 124567778889998877666553210 01134444443
Q ss_pred -------CHHHHHHHHhcC--CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-
Q 019931 238 -------DMSHLKTLLSCC--TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV- 303 (334)
Q Consensus 238 -------D~~~Le~~l~~~--~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~- 303 (334)
+++.+++.+++. +.++++|++|+++++.|.+.| +++|+++|++||++||+||+|+ | +|++|..+
T Consensus 204 ~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g-~g~~g~~~~ 281 (451)
T 3oks_A 204 LATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQT-G-FARTGAMFA 281 (451)
T ss_dssp TTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSG
T ss_pred cchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CCccccchh
Confidence 234444555421 236789999999999998877 9999999999999999999998 3 56767654
Q ss_pred ccccCCCCCccEEEecCcccccC--CccEEee
Q 019931 304 AEQFNCERDVDICVGTLSKAAGC--QGGFIAC 333 (334)
Q Consensus 304 ~~~~~~~~~~Div~~SlsKa~G~--~GG~i~~ 333 (334)
.+++++.+ |++ ||||++|+ .-|++++
T Consensus 282 ~~~~~~~p--di~--t~sK~l~~G~~iG~v~~ 309 (451)
T 3oks_A 282 CEHEGIDP--DLI--VTAKGIAGGLPLSAVTG 309 (451)
T ss_dssp GGGGTCCC--SEE--EECGGGGTTSSCEEEEE
T ss_pred hhhcCCCC--Cee--eehhhhhCCcceEEEEE
Confidence 46677765 455 89999976 2266654
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=198.30 Aligned_cols=217 Identities=13% Similarity=0.101 Sum_probs=143.8
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~A 177 (334)
++.+|++||||+++ ++||+. ||+|++++.+.- .... +....+..+.+.+|+++|+++++ .+++++++||++|
T Consensus 24 ~d~~g~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea 101 (430)
T 3i4j_A 24 YDDAGRRYLDGSSGALVANIGHG-RAEVGERMAAQAARLPF-VHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEA 101 (430)
T ss_dssp EETTSCEEEETTHHHHTCTTCBC-CHHHHHHHHHHHHHCCC-CCTTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHH
T ss_pred EECCCCEEEECCCchhccccCCC-CHHHHHHHHHHHHhccc-ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHH
Confidence 35677999999985 789985 999999775432 1111 11124557888999999999996 4678899999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC--------Cc--EEEEeeCC--------CH
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK--------MV--EVFVYKHC--------DM 239 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~--------g~--~v~~~~~~--------D~ 239 (334)
|..+++++...... .+ ..+++.+|+.+..+|+.......+..... .. .+..++++ |+
T Consensus 102 ~~~al~~~~~~~~~--~g---~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
T 3i4j_A 102 TESAVKLARQYHVE--RG---EPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDA 176 (430)
T ss_dssp HHHHHHHHHHHHHH--TT---CTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHH
T ss_pred HHHHHHHHHHHHHh--cC---CCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHH
Confidence 99999987642100 00 01235667778888876654443331000 00 22334443 45
Q ss_pred HHHHHHHhcCC-CCcEEEEEcCCCC-CCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-cccc-CCCC
Q 019931 240 SHLKTLLSCCT-MRKKVVVTDSLFS-MDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQF-NCER 311 (334)
Q Consensus 240 ~~Le~~l~~~~-~~~~lVv~e~v~n-~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~-~~~~ 311 (334)
++||+++++.. .++++|+++++++ ++|.+.+ +++|+++|++||++||+||+|+. +|++|... .+++ ++.+
T Consensus 177 ~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~--~~~~g~~~~~~~~~~~~~ 254 (430)
T 3i4j_A 177 EGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSG--MGRCGSPLALSRWSGVTP 254 (430)
T ss_dssp THHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSSSGGGGTTTCCC
T ss_pred HHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhC--CCcccchhhhhhhcCCCC
Confidence 89999997432 3678999999999 9998887 99999999999999999999983 55666543 4556 6655
Q ss_pred CccEEEecCcccccCCc----cEEeeC
Q 019931 312 DVDICVGTLSKAAGCQG----GFIACR 334 (334)
Q Consensus 312 ~~Div~~SlsKa~G~~G----G~i~~~ 334 (334)
|++ ||||++++ | |+++++
T Consensus 255 --di~--t~sK~l~~-G~~r~G~~~~~ 276 (430)
T 3i4j_A 255 --DIA--VLGKGLAA-GYAPLAGLLAA 276 (430)
T ss_dssp --SEE--EECGGGTT-TSSCCEEEEEC
T ss_pred --cEE--EEcccccC-CccccEEEEEC
Confidence 444 79999985 6 787764
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=194.16 Aligned_cols=208 Identities=17% Similarity=0.156 Sum_probs=149.0
Q ss_pred cccceeEEEeecCc---cCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHh-C-C-CcEEEeccHHHHH
Q 019931 105 ARQFKRLLLFSGND---YLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLK-K-K-EDCLLCPTGFAAN 178 (334)
Q Consensus 105 ~~~g~~~l~f~sn~---yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~-g-~-e~alv~~sG~~An 178 (334)
+.+|++|+||+++. ++|+ .+|.+++++.+.-.........++..+...+|+++|++++ + . +.++++++|++|+
T Consensus 37 d~~g~~~id~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~ 115 (426)
T 1sff_A 37 DVEGREYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAV 115 (426)
T ss_dssp ETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHH
T ss_pred eCCCCEEEEcccChhhcccCC-CCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHH
Confidence 45669999999876 7888 7999999887653221111112344677899999999999 5 4 5678889999999
Q ss_pred HHHHH---HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc------CC-----cEEEEeeC---C----
Q 019931 179 MAVIV---AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT------KM-----VEVFVYKH---C---- 237 (334)
Q Consensus 179 ~~ai~---al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~------~g-----~~v~~~~~---~---- 237 (334)
..+++ ++.. ++++|+.+..+|......+.+.... .+ ...+.+++ +
T Consensus 116 ~~~~~~a~~~~~--------------~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~ 181 (426)
T 1sff_A 116 ENAVKIARAATK--------------RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISED 181 (426)
T ss_dssp HHHHHHHHHHHT--------------CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHH
T ss_pred HHHHHHHHHhhC--------------CCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchH
Confidence 99988 4433 3677778888998877676665210 00 22233333 3
Q ss_pred -CHHHHHHHHhcC--CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCC
Q 019931 238 -DMSHLKTLLSCC--TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNC 309 (334)
Q Consensus 238 -D~~~Le~~l~~~--~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~ 309 (334)
|+++|++++++. .+++++|+++++++++|.+.| +++|.++|++||++||+||+|+ + ++++|... .+.++.
T Consensus 182 ~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~~~~~~ 259 (426)
T 1sff_A 182 DAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-G-AGRTGTLFAMEQMGV 259 (426)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSGGGGTTS
T ss_pred HHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-c-cCcccchhhhhhcCC
Confidence 788999988741 126789999887767997877 9999999999999999999999 5 56666543 234444
Q ss_pred CCCccEEEecCcccccCCc---cEEeeC
Q 019931 310 ERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 310 ~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
. +|++ ||||+||+ | ||++++
T Consensus 260 ~--~di~--s~sK~~~~-GlriG~~~~~ 282 (426)
T 1sff_A 260 A--PDLT--TFAKSIAG-GFPLAGVTGR 282 (426)
T ss_dssp C--CSEE--EECGGGGT-SSCCEEEEEE
T ss_pred C--CCEE--EEcccccC-CCceEEEEEc
Confidence 3 4554 99999997 7 888763
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-25 Score=220.17 Aligned_cols=205 Identities=19% Similarity=0.207 Sum_probs=153.5
Q ss_pred hhcccceeEEEeecCcc---CCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHh-CCCcEEEeccHHHH
Q 019931 103 TFARQFKRLLLFSGNDY---LGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLK-KKEDCLLCPTGFAA 177 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn~y---Lgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~-g~e~alv~~sG~~A 177 (334)
.+|.+|++||||+++.+ ||. +||+|++|+.+. ..+.. ....++...+|+++|++++ +.+.+++++||++|
T Consensus 94 l~D~dG~~yiD~~~~~~~~~lGh-~~p~V~~Av~~q~~~~~~----~~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA 168 (465)
T 2yky_A 94 FQDVDGHAYVNFLGEYTAGLFGH-SHPVIRAAVERALAVGLN----LSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEA 168 (465)
Confidence 35788999999999876 665 689999987653 23211 1234677899999999999 67889999999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhh-hcCCc--EEEEeeCCCHHHHHHHHhcCCCCcE
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE-RTKMV--EVFVYKHCDMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~-~~~g~--~v~~~~~~D~~~Le~~l~~~~~~~~ 254 (334)
|+++++++.. .++++++|..+..+|+.....+ +. ...+. .++.++++|+++|++++++.+++++
T Consensus 169 ~~~Aik~ar~-----------~tgr~~ii~~~~~yHG~~~~~~--sg~~~~g~~~~~~~~~~~d~~~l~~~l~~~~~~~a 235 (465)
T 2yky_A 169 NLMALATATA-----------ITGRKTVLAFDGGYHGGLLNFA--SGHAPTNAPYHVVLGVYNDVEGTADLLKRHGHDCA 235 (465)
Confidence 9999986432 1234677888999998765443 10 01133 5667888999999999975434788
Q ss_pred EEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcc-cccccCCCCCccEEEecCcccccC--C
Q 019931 255 VVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG-VAEQFNCERDVDICVGTLSKAAGC--Q 327 (334)
Q Consensus 255 lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g-~~~~~~~~~~~Div~~SlsKa~G~--~ 327 (334)
+|++|++++++|.+.| +++|+++|++||++||+||+|+ +.. |.+ ..+++++.+ ||+ ||||++|+ .
T Consensus 236 avi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~---g~~~a~~~~gv~p--Di~--t~sK~lg~G~p 307 (465)
T 2yky_A 236 AILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRL---SGGGAQEMLGISA--DLT--TLGKYIGGGMS 307 (465)
Confidence 9999999999998777 9999999999999999999999 533 433 345667655 444 89999986 1
Q ss_pred ccEEee
Q 019931 328 GGFIAC 333 (334)
Q Consensus 328 GG~i~~ 333 (334)
.|++++
T Consensus 308 iG~v~~ 313 (465)
T 2yky_A 308 FGAFGG 313 (465)
Confidence 256654
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-22 Score=191.36 Aligned_cols=212 Identities=17% Similarity=0.127 Sum_probs=156.2
Q ss_pred ccceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhC-----CC-cEEEeccHHHHHH
Q 019931 106 RQFKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKK-----KE-DCLLCPTGFAANM 179 (334)
Q Consensus 106 ~~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g-----~e-~alv~~sG~~An~ 179 (334)
.+|+++|||++++ ..+..+|.+++++.+.-.+...+....|..++.+++.+.+.+.+| .+ .++++++|++|+.
T Consensus 27 ~~g~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~ 105 (396)
T 3jtx_A 27 PEGMEAVPLHIGE-PKHPTPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALF 105 (396)
T ss_dssp CTTCCCEECSCCS-CCSCCCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHH
T ss_pred ccCCCeEEeCCcC-CCCCCCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHH
Confidence 4469999999997 678889999998877543333344455666777777777777666 34 7888899999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCc
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRK 253 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~ 253 (334)
.++.+++.++. .+.+|.|++..+.|..+...++.. |.+++.++.+ |+++|++++++ ++
T Consensus 106 ~~~~~~~~~g~---------~~~~d~vl~~~p~~~~~~~~~~~~----g~~~~~v~~~~~g~~~d~~~l~~~~~~---~~ 169 (396)
T 3jtx_A 106 SFVQTVLNPVS---------DGIKPAIVSPNPFYQIYEGATLLG----GGEIHFANCPAPSFNPDWRSISEEVWK---RT 169 (396)
T ss_dssp HHHHHHCCC------------CCCCEEEEEESCCHHHHHHHHHT----TCEEEEEECCTTTCCCCGGGSCHHHHH---TE
T ss_pred HHHHHHhCCCC---------ccCCCEEEEcCCCcHhHHHHHHHc----CCEEEEeecCCCCCccCHHHHHHhhcc---Cc
Confidence 99998876410 000168888888888887777766 8888888752 78899998875 68
Q ss_pred EEEEEcCCCCCCCCccCHH---HHHHHHHHcCCEEEEecCcccccccC-CCcccccc---cCCCCCccEEEecCcccccC
Q 019931 254 KVVVTDSLFSMDGDFAPMV---ELVKLRRKYGFLLVLDDAHGTFVCGK-NGGGVAEQ---FNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 254 ~lVv~e~v~n~~G~~~pL~---~L~ela~k~ga~LivDeAh~~Gv~G~-~G~g~~~~---~~~~~~~Div~~SlsKa~G~ 326 (334)
++|++++++||+|.+.|.+ +|+++|++||++||+||+|+...++. ...+.... ++...+.++++.||||+||+
T Consensus 170 ~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 249 (396)
T 3jtx_A 170 KLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNV 249 (396)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSC
T ss_pred EEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCC
Confidence 8988889999999998855 59999999999999999999755432 11111110 11124567999999999987
Q ss_pred Cc---cEEeeC
Q 019931 327 QG---GFIACR 334 (334)
Q Consensus 327 ~G---G~i~~~ 334 (334)
.| ||++++
T Consensus 250 ~G~r~G~~~~~ 260 (396)
T 3jtx_A 250 PGLRSGFVAGD 260 (396)
T ss_dssp GGGCCEEEEEC
T ss_pred cccceEEEEeC
Confidence 66 888764
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=199.50 Aligned_cols=208 Identities=15% Similarity=0.195 Sum_probs=148.5
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC---CCcEEEeccHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK---KEDCLLCPTGFA 176 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g---~e~alv~~sG~~ 176 (334)
++.+|++||||++| ++||+. ||+|++|+.+. ..+. .+....+..+...+|+++|+++++ .+++++++||++
T Consensus 59 ~d~~G~~ylD~~~~~~~~~lGh~-~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGse 136 (453)
T 4ffc_A 59 VDADGNSFIDLGAGIAVTTVGAS-HPAVAAAIADQATHFT-HTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAE 136 (453)
T ss_dssp EETTSCEEEESSHHHHTCTTCTT-CHHHHHHHHHHHHHCS-CCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHH
T ss_pred EeCCCCEEEEcCCCcccCcCCCC-CHHHHHHHHHHHHhcc-ccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHH
Confidence 56788999999986 568874 99999977543 2221 122234567888999999999986 357889999999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc---------CCcEEEEeeCC----C-----
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT---------KMVEVFVYKHC----D----- 238 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~---------~g~~v~~~~~~----D----- 238 (334)
||..+++++... ++++.+|..+..+|+.......+.... ....+..++.+ |
T Consensus 137 A~~~alk~a~~~-----------~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 205 (453)
T 4ffc_A 137 AVENAIKVARLA-----------TGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLT 205 (453)
T ss_dssp HHHHHHHHHHHH-----------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCC
T ss_pred HHHHHHHHHHHh-----------cCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccc
Confidence 999999865531 124677778999999887766654210 00133444433 3
Q ss_pred --------HHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-cc
Q 019931 239 --------MSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AE 305 (334)
Q Consensus 239 --------~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~ 305 (334)
.+.|++.+.. .++++|++|+++++.|.+.| +++|+++|++||++||+||+|+. +|++|..+ .+
T Consensus 206 ~~~~~~~~~~~l~~~i~~--~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g--~g~~g~~~a~~ 281 (453)
T 4ffc_A 206 GEEAARRAISRIETQIGA--QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTG--FARTGAWFASE 281 (453)
T ss_dssp HHHHHHHHHHHHHHHTCG--GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSSSTHH
T ss_pred hHHHHHHHHHHHHHhcCC--CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccC--CCcccccchhh
Confidence 2344444422 35789999999999998877 99999999999999999999973 56666654 46
Q ss_pred ccCCCCCccEEEecCcccccCCc---cEEee
Q 019931 306 QFNCERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 306 ~~~~~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
++++.+ |++ ||||++|+ | |++++
T Consensus 282 ~~~~~p--di~--t~sK~~~~-G~~~G~~~~ 307 (453)
T 4ffc_A 282 HEGIVP--DIV--TMAKGIAG-GMPLSAVTG 307 (453)
T ss_dssp HHTCCC--SEE--EECGGGGT-TSSCEEEEE
T ss_pred hcCCCc--chH--hhhhhhcC-CcCeEEEEE
Confidence 677765 444 89999976 4 67665
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=198.11 Aligned_cols=207 Identities=16% Similarity=0.144 Sum_probs=150.7
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHh-CCCcEEEeccHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLK-KKEDCLLCPTGFAAN 178 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~-g~e~alv~~sG~~An 178 (334)
++.+|++||||+++ +++|+ .||+|++++.+.- .+.. ..+..+...+|+++|++++ +.+++++++||++|+
T Consensus 47 ~d~~g~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~ 121 (424)
T 2e7u_A 47 WDADGNRYLDYVMSWGPLILGH-AHPKVLARVRETLERGLT----FGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEAT 121 (424)
T ss_dssp EETTCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHHTCSC----CSSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHH
T ss_pred EeCCCCEEEEccccccccccCC-CCHHHHHHHHHHHHhCCC----CCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHH
Confidence 35667999999987 68999 8999999876542 2221 1235678899999999999 678889999999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhh---------hcCC------cEEEEeeCCCHHHHH
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE---------RTKM------VEVFVYKHCDMSHLK 243 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~---------~~~g------~~v~~~~~~D~~~Le 243 (334)
..++++...- ++++++|+.+..+|+.....+.+.. ...+ .+++.++++|+++||
T Consensus 122 ~~al~~ar~~-----------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le 190 (424)
T 2e7u_A 122 MSALRLARGY-----------TGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLR 190 (424)
T ss_dssp HHHHHHHHHH-----------HCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHH
T ss_pred HHHHHHHHHh-----------hCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHH
Confidence 9999852110 1247788888888874322111100 0002 246778889999999
Q ss_pred HHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcc-cccccCCCCCccEEEe
Q 019931 244 TLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG-VAEQFNCERDVDICVG 318 (334)
Q Consensus 244 ~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g-~~~~~~~~~~~Div~~ 318 (334)
+++++..+++++|+++++++++|.+.| +++|+++ ++||++||+||+|+ |+ +.|.. ..+++++.+ |++
T Consensus 191 ~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~--~~g~~~~~~~~~~~~--di~-- 262 (424)
T 2e7u_A 191 EVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GF--RLAFGGATELLGLKP--DLV-- 262 (424)
T ss_dssp HHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TT--TSSTTHHHHHHTCCC--SEE--
T ss_pred HHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-cc--ccchhHHHHHhCCCc--chh--
Confidence 999743236789999999998998887 9999999 99999999999999 53 33433 345667655 554
Q ss_pred cCcccccC--CccEEeeC
Q 019931 319 TLSKAAGC--QGGFIACR 334 (334)
Q Consensus 319 SlsKa~G~--~GG~i~~~ 334 (334)
||||+||+ ..|+++++
T Consensus 263 s~sK~l~~G~~~G~~~~~ 280 (424)
T 2e7u_A 263 TLGKILGGGLPAAAYAGR 280 (424)
T ss_dssp EECGGGGTTSSCEEEEEC
T ss_pred hhhhhhhCCcceEEEEEc
Confidence 99999986 45787764
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=185.79 Aligned_cols=198 Identities=12% Similarity=0.101 Sum_probs=149.8
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC--------CCcEEEeccHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK--------KEDCLLCPTGFAAN 178 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g--------~e~alv~~sG~~An 178 (334)
|++++||.++++ .+..+|.+++++.+.- .+...+....| ..+++++++++++ .+.++++++|++|+
T Consensus 28 g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y~~~~~----~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~ 102 (370)
T 2z61_A 28 GKKVIHLEIGEP-DFNTPKPIVDEGIKSLKEGKTHYTDSRG----ILELREKISELYKDKYKADIIPDNIIITGGSSLGL 102 (370)
T ss_dssp TCCCEECCCCSC-SSCCCHHHHHHHHHHHHTTCCSCCCTTC----CHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHH
T ss_pred CCCEEEccCCCC-CCCCCHHHHHHHHHHHHcCccCCCCCCC----CHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHH
Confidence 588999999875 6666899999776542 22222222223 3556667776653 25788999999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEE
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVT 258 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~ 258 (334)
..++.+++++ ||.|++..+.|.++...++.. |.+++.++ .|+++|++++++ ++++|++
T Consensus 103 ~~~~~~~~~~--------------gd~vl~~~p~~~~~~~~~~~~----g~~~~~v~-~d~~~l~~~l~~---~~~~v~~ 160 (370)
T 2z61_A 103 FFALSSIIDD--------------GDEVLIQNPCYPCYKNFIRFL----GAKPVFCD-FTVESLEEALSD---KTKAIII 160 (370)
T ss_dssp HHHHHHHCCT--------------TCEEEEESSCCTHHHHHHHHT----TCEEEEEC-SSHHHHHHHCCS---SEEEEEE
T ss_pred HHHHHHhcCC--------------CCEEEEeCCCchhHHHHHHHc----CCEEEEeC-CCHHHHHHhccc---CceEEEE
Confidence 9999988654 788888888888888887766 88888888 899999998864 6788888
Q ss_pred cCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 259 DSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 259 e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
++++||+|.+.|++ |.++|++||++||+||+|+.+.++.....+.. +.-..+.|++++||||++|+.| ||++++
T Consensus 161 ~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~-~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 237 (370)
T 2z61_A 161 NSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIE-FDENLEKTILINGFSKLYAMTGWRIGYVISN 237 (370)
T ss_dssp ESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGG-TCTTCSSEEEEEESTTTTTCGGGCCEEEECC
T ss_pred cCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHH-ccCCCCcEEEEecChhccCCccceEEEEEEC
Confidence 99999999999999 99999999999999999997655321111211 1112456899999999998666 888764
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.3e-22 Score=188.54 Aligned_cols=203 Identities=16% Similarity=0.092 Sum_probs=152.1
Q ss_pred cceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHh----CC----C-cEEEeccHHHH
Q 019931 107 QFKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLK----KK----E-DCLLCPTGFAA 177 (334)
Q Consensus 107 ~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~----g~----e-~alv~~sG~~A 177 (334)
.|++++||+++++ .+..+|.+++++.+.-... ....++......+|++++++++ |. + .++++++|++|
T Consensus 23 ~g~~~idl~~~~~-~~~~~~~v~~a~~~~~~~~--~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a 99 (376)
T 2dou_A 23 RGVGLIDLSIGST-DLPPPEAPLKALAEALNDP--TTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEG 99 (376)
T ss_dssp TTCCCEECSSCCC-CCCCCHHHHHHHHHHTTCG--GGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHH
T ss_pred cCCCEEeccCCCC-CCCCCHHHHHHHHHHHhCC--CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHH
Confidence 3588999999875 6667999999887654221 1112233345678888888887 75 3 67888899999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCC
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMR 252 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~ 252 (334)
+..++.++.++ ||.|++..+.|......++.. |.+++.++. .|+++|++++++ +
T Consensus 100 ~~~~~~~l~~~--------------gd~vl~~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~d~~~l~~~l~~---~ 158 (376)
T 2dou_A 100 LAHLLLALTEP--------------EDLLLLPEVAYPSYFGAARVA----SLRTFLIPLREDGLADLKAVPEGVWR---E 158 (376)
T ss_dssp HHHHHHHHCCT--------------TCEEEEESSCCHHHHHHHHHT----TCEEEEECBCTTSSBCGGGSCHHHHH---H
T ss_pred HHHHHHHhcCC--------------CCEEEECCCCcHhHHHHHHHc----CCEEEEeeCCCCCCCCHHHHHHhhcc---C
Confidence 99999988654 788888888888887777766 788888875 378899988864 6
Q ss_pred cEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc-
Q 019931 253 KKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG- 328 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G- 328 (334)
+++|++++++||+|.+.| +++|+++|++||++||+||+|+.+.++..........+. .+.+++++||||+||+.|
T Consensus 159 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~ 237 (376)
T 2dou_A 159 AKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGA-KERVVELFSLSKSYNLAGF 237 (376)
T ss_dssp EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTG-GGTEEEEEEHHHHHTCGGG
T ss_pred ceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCC-CCcEEEEecchhhcCChhh
Confidence 788888899999999887 678999999999999999999976553212222222221 235689999999998666
Q ss_pred --cEEeeC
Q 019931 329 --GFIACR 334 (334)
Q Consensus 329 --G~i~~~ 334 (334)
||++++
T Consensus 238 r~G~~~~~ 245 (376)
T 2dou_A 238 RLGFALGS 245 (376)
T ss_dssp CCEEEEEC
T ss_pred eeEEEecC
Confidence 888764
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.4e-22 Score=191.56 Aligned_cols=209 Identities=24% Similarity=0.226 Sum_probs=148.6
Q ss_pred cccceeEEEeecCc---cCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCC---CcEEEeccHHHH
Q 019931 105 ARQFKRLLLFSGND---YLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKK---EDCLLCPTGFAA 177 (334)
Q Consensus 105 ~~~g~~~l~f~sn~---yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~---e~alv~~sG~~A 177 (334)
+.+|++|+||+++. ++|+..||+|++++.+.- .+.. +....+..+...+++++|++++|. +++++++||++|
T Consensus 38 d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea 116 (419)
T 2eo5_A 38 DVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAH-AAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEA 116 (419)
T ss_dssp ETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCC-CSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHH
T ss_pred ECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCcc-ccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHH
Confidence 45669999999875 788877999999886542 2211 111123457789999999999985 467888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh------c---CCcEEEEeeCC-----------
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER------T---KMVEVFVYKHC----------- 237 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~------~---~g~~v~~~~~~----------- 237 (334)
|..+++++... + ++.+|+.+..+|+.....+.+... . ....++.++++
T Consensus 117 ~~~ai~~~~~~-----------~-~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~ 184 (419)
T 2eo5_A 117 IEASIKVVKNT-----------G-RKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHING 184 (419)
T ss_dssp HHHHHHHHHTT-----------S-CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCT
T ss_pred HHHHHHHHHHh-----------h-CCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccc
Confidence 99999876431 0 256777888899887766655311 0 01235555543
Q ss_pred ----------CHHHHH-HHHhcCC--CCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCC
Q 019931 238 ----------DMSHLK-TLLSCCT--MRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNG 300 (334)
Q Consensus 238 ----------D~~~Le-~~l~~~~--~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G 300 (334)
|+++|+ +++++.. +++++|++++++|++|.+.| +++|+++|++||++||+||+|+. +|++|
T Consensus 185 ~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~--~g~~g 262 (419)
T 2eo5_A 185 YENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMG--LGRTG 262 (419)
T ss_dssp TTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTT--TTTTS
T ss_pred cccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--CccCc
Confidence 367888 8876421 25789999999889998777 99999999999999999999983 45555
Q ss_pred ccc-ccccCCCCCccEEEecCcccccCCc----cEEee
Q 019931 301 GGV-AEQFNCERDVDICVGTLSKAAGCQG----GFIAC 333 (334)
Q Consensus 301 ~g~-~~~~~~~~~~Div~~SlsKa~G~~G----G~i~~ 333 (334)
... .+++++.+ |++ ||||+||+ | |++++
T Consensus 263 ~~~~~~~~~~~~--d~~--t~sK~~~~-G~~riG~~~~ 295 (419)
T 2eo5_A 263 KLFAIENFNTVP--DVI--TLAKALGG-GIMPIGATIF 295 (419)
T ss_dssp SSSGGGGGTCCC--SEE--EECGGGGT-TTSCCEEEEE
T ss_pred chhhHHhcCCCC--CEE--EecccccC-CccceEEEEE
Confidence 432 34555544 554 89999985 6 77765
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=193.78 Aligned_cols=204 Identities=18% Similarity=0.153 Sum_probs=148.5
Q ss_pred cccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHHH
Q 019931 105 ARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAAN 178 (334)
Q Consensus 105 ~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~An 178 (334)
+.+|+.|+||+++ +++|+ .+|.+++++.++- .....++.+ ..+...+++++++++++ .+.+++++||++|+
T Consensus 41 d~~g~~~ld~~~~~~~~~~g~-~~~~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~ 117 (395)
T 1vef_A 41 DAEGNEYIDCVGGYGVANLGH-GNPEVVEAVKRQAETLMAMPQTL--PTPMRGEFYRTLTAILPPELNRVFPVNSGTEAN 117 (395)
T ss_dssp ETTSCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCCTTS--CCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHH
T ss_pred eCCCCEEEEccCccccccCCC-CCHHHHHHHHHHHHhCCCCcccc--CCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHH
Confidence 4556999999887 57887 7899999775432 111112222 35788999999999994 56788889999999
Q ss_pred HHHHHHHh--hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc--------CCcEEEEeeCCCHHHHHHHHhc
Q 019931 179 MAVIVAVG--NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT--------KMVEVFVYKHCDMSHLKTLLSC 248 (334)
Q Consensus 179 ~~ai~al~--~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~--------~g~~v~~~~~~D~~~Le~~l~~ 248 (334)
..+++++. .+ ++++|+.+..+|.++...+.+.... ....+..++++|+++|++++++
T Consensus 118 ~~al~~~~~~~~-------------~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~ 184 (395)
T 1vef_A 118 EAALKFARAHTG-------------RKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDE 184 (395)
T ss_dssp HHHHHHHHHHHS-------------CCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCT
T ss_pred HHHHHHHHHHhC-------------CCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhcc
Confidence 99998764 22 3567777777888776666554100 0112566777899999999864
Q ss_pred CCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEecCccc
Q 019931 249 CTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVGTLSKA 323 (334)
Q Consensus 249 ~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~SlsKa 323 (334)
++++|++++++|++|.+.| +++|.++|++||++||+||+|+ | +++.|..+ ....++. .|++ ||||+
T Consensus 185 ---~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~-~-~~~~g~~~~~~~~~~~--~d~~--s~sK~ 255 (395)
T 1vef_A 185 ---ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT-G-MGRTGKRFAFEHFGIV--PDIL--TLAKA 255 (395)
T ss_dssp ---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSTHHHHTCC--CSEE--EECGG
T ss_pred ---CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CccCCchhHhhhcCCC--CCEE--EEccc
Confidence 6899999999999999888 9999999999999999999999 5 55555543 2334443 4655 89999
Q ss_pred ccC--CccEEee
Q 019931 324 AGC--QGGFIAC 333 (334)
Q Consensus 324 ~G~--~GG~i~~ 333 (334)
|++ ..|++++
T Consensus 256 ~~~g~~~G~~~~ 267 (395)
T 1vef_A 256 LGGGVPLGVAVM 267 (395)
T ss_dssp GGTTSSCEEEEE
T ss_pred ccCCCceEEEEe
Confidence 986 1266554
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=198.05 Aligned_cols=208 Identities=15% Similarity=0.154 Sum_probs=143.7
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHh-CCCcEEEeccHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLK-KKEDCLLCPTGFAAN 178 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~-g~e~alv~~sG~~An 178 (334)
++.+|++||||+++ +++|+ .||+|++++.+.- .+. . ..+..+...++.+.+++++ +.+++++++||++|+
T Consensus 52 ~d~~g~~~iD~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~-~---~~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~ 126 (453)
T 2cy8_A 52 TDVDGNVYLDFFGGHGALVLGH-GHPRVNAAIAEALSHGV-Q---YAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETT 126 (453)
T ss_dssp EETTCCEEEESCTTTTSCTTCB-TCHHHHHHHHHHHTTTC-S---SCSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHH
T ss_pred EECCCCEEEECcccHhhcccCC-CCHHHHHHHHHHHHhCC-C---CCCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHH
Confidence 34567999999988 78999 7999999886643 322 1 1234577778888888877 567889999999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh------cCC------cEEEEeeCCCHHHHHHHH
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER------TKM------VEVFVYKHCDMSHLKTLL 246 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~------~~g------~~v~~~~~~D~~~Le~~l 246 (334)
..++++...- ++++++|+.+..+|+.....+..... ..+ ..++.++++|+++||+++
T Consensus 127 ~~al~~ar~~-----------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l 195 (453)
T 2cy8_A 127 LLALRVARAF-----------TGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVF 195 (453)
T ss_dssp HHHHHHHHHH-----------HCCCEEEEECC----------------------------CGGGEEEECTTCHHHHHHHH
T ss_pred HHHHHHHHHh-----------hCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCCCHHHHHHHH
Confidence 9999872110 02367888887788543322111100 002 235677789999999999
Q ss_pred hcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcc-cccccCCCCCccEEEecCc
Q 019931 247 SCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG-VAEQFNCERDVDICVGTLS 321 (334)
Q Consensus 247 ~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g-~~~~~~~~~~~Div~~Sls 321 (334)
++..+++++|+++++++++|.+.| +++|+++|++||++||+||+|+ |+ +.|.. ..+++++.+ |++ |||
T Consensus 196 ~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~--~~g~~~~~~~~~~~~--di~--s~s 268 (453)
T 2cy8_A 196 ANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GF--RVGNHGMQALLDVQP--DLT--CLA 268 (453)
T ss_dssp HHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TT--TTCTTHHHHHHTCCC--SEE--EEE
T ss_pred HhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-cc--ccCchhhhHHhCCCC--cEE--EEC
Confidence 753236789999999998998887 9999999999999999999998 54 33433 344566655 554 899
Q ss_pred ccccC--CccEEeeC
Q 019931 322 KAAGC--QGGFIACR 334 (334)
Q Consensus 322 Ka~G~--~GG~i~~~ 334 (334)
|+||+ .+|+++++
T Consensus 269 K~l~~G~~~G~v~~~ 283 (453)
T 2cy8_A 269 KASAGGLPGGILGGR 283 (453)
T ss_dssp GGGGTTSSCEEEEEC
T ss_pred hhhhCCcceEEEech
Confidence 99975 45888764
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-22 Score=192.41 Aligned_cols=205 Identities=17% Similarity=0.152 Sum_probs=152.9
Q ss_pred hccc--ceeEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHH
Q 019931 104 FARQ--FKRLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFA 176 (334)
Q Consensus 104 ~~~~--g~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~ 176 (334)
++.. |++||||..++ ..+..+|.|++++.+.- .+..++.. ...++.+++.+.+++.++ .+.++++++|++
T Consensus 54 ~d~~~~g~~~i~~~~~~-~~~~~~~~v~~a~~~~~~~~~~~y~~--~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~e 130 (421)
T 3l8a_A 54 WKTSENNPELLQMWVAD-MDFLPVPEIKEAIINYGREHIFGYNY--FNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVP 130 (421)
T ss_dssp TGGGTTCTTCEECCSSC-CCSCCCHHHHHHHHHHHHHCCSSCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHH
T ss_pred ccccCCCCCeeecccCC-CCCCCCHHHHHHHHHHHhcCCcCCCC--CCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHH
Confidence 4555 79999998876 67778999999886542 22222211 125667778888887777 345788899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC--------CCHHHHHHHHhc
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH--------CDMSHLKTLLSC 248 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~--------~D~~~Le~~l~~ 248 (334)
|+..+++++.++ +|.|++..+.|......+... +.+++.++. .|+++|++++++
T Consensus 131 a~~~a~~~~~~~--------------gd~Vi~~~~~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~~d~~~le~~i~~ 192 (421)
T 3l8a_A 131 AISIALQAFSEK--------------GDAVLINSPVYYPFARTIRLN----DHRLVENSLQIINGRFEIDFEQLEKDIID 192 (421)
T ss_dssp HHHHHHHHHSCT--------------EEEEEEEESCCHHHHHHHHHT----TEEEEEEECEEETTEEECCHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--------------CCEEEECCCCcHHHHHHHHHC----CCEEEeccccccCCCeeeCHHHHHHHhhc
Confidence 999999988654 788888888888877777766 777777764 399999999974
Q ss_pred CCCCcEEEEEcCCCCCCCCc---cCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC---CCccEEEecCcc
Q 019931 249 CTMRKKVVVTDSLFSMDGDF---APMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE---RDVDICVGTLSK 322 (334)
Q Consensus 249 ~~~~~~lVv~e~v~n~~G~~---~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~---~~~Div~~SlsK 322 (334)
+++++|++++++|++|.+ .++++|+++|++||++||+||+|+...+ +|........+. .+.++++.|+||
T Consensus 193 --~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~~i~~~s~sK 268 (421)
T 3l8a_A 193 --NNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLAL--FGNTHHSLNTLDASYKDFTIILSSATK 268 (421)
T ss_dssp --TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC--TTCCCCCGGGSCTTGGGTEEEEECSHH
T ss_pred --cCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccccccc--CCCCCccHHHcCchhcCcEEEEEeChh
Confidence 378999999999999988 4689999999999999999999986443 343322222222 234588999999
Q ss_pred cccCCc---cEEee
Q 019931 323 AAGCQG---GFIAC 333 (334)
Q Consensus 323 a~G~~G---G~i~~ 333 (334)
+||..| |++++
T Consensus 269 ~~g~~G~~~G~~~~ 282 (421)
T 3l8a_A 269 TFNIAGTKNSFAII 282 (421)
T ss_dssp HHTCGGGCCEEEEC
T ss_pred hccCchhheEeEEc
Confidence 998655 78765
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-23 Score=203.40 Aligned_cols=224 Identities=15% Similarity=0.167 Sum_probs=148.8
Q ss_pred hhcccceeEEEeecCcc---CCCCCCHHHHHHHHHhc----CCCCccccccCchHHHHHHHHHHHhHh--CCCcEEEecc
Q 019931 103 TFARQFKRLLLFSGNDY---LGLSSHPTIAKAAARHG----MGPRGSALICGYTNYHRLLESCLADLK--KKEDCLLCPT 173 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn~y---Lgl~~~p~v~~a~~~~g----~g~~~sr~~~G~~~~~~~LE~~La~~~--g~e~alv~~s 173 (334)
.++.+|++||||+++.+ ||+ +||+|++|+.+.- .+.+.........++.++|+++|+++. +.+++++++|
T Consensus 57 l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~s 135 (472)
T 1ohv_A 57 LVDVDGNRMLDLYSQISSIPIGY-SHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMAC 135 (472)
T ss_dssp EEBTTSCEEEESSHHHHTCSSCB-TCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESS
T ss_pred EEeCCCCEEEECCCCHhhcccCC-CCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCC
Confidence 35688999999999755 666 6999999886531 111110000113456666777777776 4678999999
Q ss_pred HHHHHHHHHHHHhhh------hh-hcc--------CCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc----CCc-----
Q 019931 174 GFAANMAVIVAVGNI------AS-LLA--------GDEKSFKDEKIAIFSDALNHASIIDGIRIAERT----KMV----- 229 (334)
Q Consensus 174 G~~An~~ai~al~~~------~~-~~~--------~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~----~g~----- 229 (334)
|++||.++++++... +. -++ ....|.+.++.+|..+..+|+....++.++... .+.
T Consensus 136 GseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~ 215 (472)
T 1ohv_A 136 GSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDW 215 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCC
T ss_pred chhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCC
Confidence 999999999976421 00 000 000000013678888999999988777665210 011
Q ss_pred EEEEe-----e------CC------CHHHHHHHHhcCCC---CcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEE
Q 019931 230 EVFVY-----K------HC------DMSHLKTLLSCCTM---RKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLL 285 (334)
Q Consensus 230 ~v~~~-----~------~~------D~~~Le~~l~~~~~---~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~L 285 (334)
..+.+ + ++ |+++|+++|++... ++++|++|+++|++|.+.| |++|+++|++||++|
T Consensus 216 ~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~ll 295 (472)
T 1ohv_A 216 PIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAF 295 (472)
T ss_dssp CEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEE
T ss_pred cccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 01122 1 22 67889998875211 6899999999999999887 999999999999999
Q ss_pred EEecCcccccccCCCcc-cccccCCCCCccEEEecCcccccCCccEEe
Q 019931 286 VLDDAHGTFVCGKNGGG-VAEQFNCERDVDICVGTLSKAAGCQGGFIA 332 (334)
Q Consensus 286 ivDeAh~~Gv~G~~G~g-~~~~~~~~~~~Div~~SlsKa~G~~GG~i~ 332 (334)
|+||+|+ | +|++|.+ ..+++++...+|++ ||||++ ..|||++
T Consensus 296 i~DEv~~-g-~g~~g~~~~~~~~gv~~~~Di~--t~sK~~-l~GG~~~ 338 (472)
T 1ohv_A 296 LVDEVQT-G-GGSTGKFWAHEHWGLDDPADVM--TFSKKM-MTGGFFH 338 (472)
T ss_dssp EEECTTT-T-TTTTSSSSGGGGGCCSSCCSEE--EECGGG-SSEEEEE
T ss_pred EEeCccc-C-CCCCCCchhccccCCCCCCCEE--EEcccc-ccCCccC
Confidence 9999997 4 6777764 34566764224655 899995 2268765
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=187.01 Aligned_cols=201 Identities=17% Similarity=0.167 Sum_probs=148.6
Q ss_pred cceeEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHh----CC----CcEEEeccHHHH
Q 019931 107 QFKRLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLK----KK----EDCLLCPTGFAA 177 (334)
Q Consensus 107 ~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~----g~----e~alv~~sG~~A 177 (334)
.|++++||+++++ .+..+|.+++++.+.- .+...+....| ..+|++++++++ |. +.++++++|++|
T Consensus 39 ~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y~~~~g----~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~a 113 (389)
T 1o4s_A 39 KGEDVINLTAGEP-DFPTPEPVVEEAVRFLQKGEVKYTDPRG----IYELREGIAKRIGERYKKDISPDQVVVTNGAKQA 113 (389)
T ss_dssp TTCCCEECCCSSC-SSCCCHHHHHHHHHHHTTCCCCCCCTTC----CHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHH
T ss_pred cCCCEEEccCCCC-CCCCCHHHHHHHHHHHhcCCCCCCCCCC----CHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHH
Confidence 3588999999875 5566899999876543 22212221223 355666666665 53 468888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCC
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCT 250 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~ 250 (334)
+..++.+++.+ ||.|++..+.|.++...++.. |.+++.++.+ |+++|++++++
T Consensus 114 l~~~~~~l~~~--------------gd~Vl~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~l~~-- 173 (389)
T 1o4s_A 114 LFNAFMALLDP--------------GDEVIVFSPVWVSYIPQIILA----GGTVNVVETFMSKNFQPSLEEVEGLLVG-- 173 (389)
T ss_dssp HHHHHHHHCCT--------------TCEEEEEESCCTTHHHHHHHT----TCEEEEEECCGGGTTCCCHHHHHHTCCT--
T ss_pred HHHHHHHhCCC--------------CCEEEEcCCCchhHHHHHHHc----CCEEEEEecCCccCCCCCHHHHHHhccc--
Confidence 99999988654 788888888888888877766 7888888753 77888887754
Q ss_pred CCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCC
Q 019931 251 MRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQ 327 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~ 327 (334)
++++|++++++||+|.+.| +++|+++|++||++||+||+|+.+.++.....+.. +.-..+.|++++||||+||+.
T Consensus 174 -~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~-~~~~~~~~i~~~s~sK~~~~~ 251 (389)
T 1o4s_A 174 -KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILD-VSEGFDRIVYINGFSKSHSMT 251 (389)
T ss_dssp -TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHH-HCSSSTTEEEEEESTTTTTCG
T ss_pred -CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhh-cCCCCCcEEEEeechhhcCCc
Confidence 6888999999999999877 89999999999999999999997655321111221 211245789999999999866
Q ss_pred c---cEEeeC
Q 019931 328 G---GFIACR 334 (334)
Q Consensus 328 G---G~i~~~ 334 (334)
| ||++++
T Consensus 252 G~r~G~l~~~ 261 (389)
T 1o4s_A 252 GWRVGYLISS 261 (389)
T ss_dssp GGCCEEEECC
T ss_pred ccceEEEEeC
Confidence 6 888764
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=187.06 Aligned_cols=206 Identities=12% Similarity=0.113 Sum_probs=148.1
Q ss_pred cceeEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHHHHHH
Q 019931 107 QFKRLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAANMAV 181 (334)
Q Consensus 107 ~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~An~~a 181 (334)
+|++++||+++++ .+..+|.+++++.+.- .+...+....|...+.+++.+.+.+.+| .+.++++++|++|+..+
T Consensus 28 ~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~ 106 (388)
T 1j32_A 28 EGIDVCSFSAGEP-DFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNL 106 (388)
T ss_dssp TTCCCEECCCSSC-SSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHH
T ss_pred cCCCEEECCCCCC-CCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHH
Confidence 4588999999875 5667899999776542 2222232333444444444444444444 25678888999999999
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCCcE
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~~~ 254 (334)
+.++.++ ||.|++..+.|.++...++.. |.+++.++.+ |+++|++++++ +++
T Consensus 107 ~~~~~~~--------------gd~vl~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~ 165 (388)
T 1j32_A 107 MLAMIEP--------------GDEVIIPAPFWVSYPEMVKLA----EGTPVILPTTVETQFKVSPEQIRQAITP---KTK 165 (388)
T ss_dssp HHHHCCT--------------TCEEEEESSCCTHHHHHHHHT----TCEEEEECCCGGGTTCCCHHHHHHHCCT---TEE
T ss_pred HHHhcCC--------------CCEEEEcCCCChhHHHHHHHc----CCEEEEecCCcccCCCCCHHHHHHhcCc---Cce
Confidence 9988654 788888888888888777766 7888888753 78888888864 688
Q ss_pred EEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccccCCc--
Q 019931 255 VVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAAGCQG-- 328 (334)
Q Consensus 255 lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~G~~G-- 328 (334)
+|++++++||+|.+.| +++|+++|++||+++|+||+|+.+.++.........+.. ..+.|+++.|+||+||+.|
T Consensus 166 ~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r 245 (388)
T 1j32_A 166 LLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWR 245 (388)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTC
T ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccc
Confidence 9999999999999865 899999999999999999999976553211111111111 0235899999999998666
Q ss_pred -cEEeeC
Q 019931 329 -GFIACR 334 (334)
Q Consensus 329 -G~i~~~ 334 (334)
|+++++
T Consensus 246 ~G~~~~~ 252 (388)
T 1j32_A 246 VGFLAGP 252 (388)
T ss_dssp CEEEECC
T ss_pred eEEEEeC
Confidence 888764
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-22 Score=189.68 Aligned_cols=198 Identities=12% Similarity=0.094 Sum_probs=153.1
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAANMAVIV 183 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~An~~ai~ 183 (334)
+.++||++++ .++..+|.|++++.+.- .+..+ +..+..++.+++++.+++++| .+.++++++|++|+..++.
T Consensus 32 ~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~~--y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~ 108 (391)
T 4dq6_A 32 NDLLPMWVAD-MDFKAAPCIIDSLKNRLEQEIYG--YTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLIN 108 (391)
T ss_dssp SCSEECCSSS-CSSCCCHHHHHHHHHHHTTCCCC--CBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHH
T ss_pred CCceeccccC-CCCCCCHHHHHHHHHHHhCCCCC--CCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHH
Confidence 5669999987 77888999999886643 22222 223457888899999999887 3578899999999999999
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC---------CHHHHHHHHhcCCCCcE
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC---------DMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~---------D~~~Le~~l~~~~~~~~ 254 (334)
+++++ +|.|++..+.|.+....++.. +.+++.++.+ |+++|++++++ ++
T Consensus 109 ~~~~~--------------gd~vl~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~ 166 (391)
T 4dq6_A 109 ELTKA--------------NDKIMIQEPVYSPFNSVVKNN----NRELIISPLQKLENGNYIMDYEDIENKIKD----VK 166 (391)
T ss_dssp HHSCT--------------TCEEEECSSCCTHHHHHHHHT----TCEEEECCCEECTTSCEECCHHHHHHHCTT----EE
T ss_pred HhCCC--------------CCEEEEcCCCCHHHHHHHHHc----CCeEEeeeeeecCCCceEeeHHHHHHHhhc----CC
Confidence 88754 788999999998888887766 8888887765 88999988863 78
Q ss_pred EEEEcCCCCCCCCc---cCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCC---CccEEEecCcccccCCc
Q 019931 255 VVVTDSLFSMDGDF---APMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCER---DVDICVGTLSKAAGCQG 328 (334)
Q Consensus 255 lVv~e~v~n~~G~~---~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~---~~Div~~SlsKa~G~~G 328 (334)
+|++++++||+|.+ .++++|+++|++||++||+||+|+.+.++ |........+.+ +..+++.||||++|..|
T Consensus 167 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 244 (391)
T 4dq6_A 167 LFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILK--KHKHIPMASISKEFEKNTITCMAPTKTFNIAG 244 (391)
T ss_dssp EEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCT--TCCCCCGGGSCHHHHHTEEEEECSHHHHTCGG
T ss_pred EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccC--CCCccCHHHcCccccCcEEEEEechhhccCcc
Confidence 89999999999998 45888999999999999999999875543 322211112211 23488999999998655
Q ss_pred ---cEEee
Q 019931 329 ---GFIAC 333 (334)
Q Consensus 329 ---G~i~~ 333 (334)
|++++
T Consensus 245 ~r~G~~~~ 252 (391)
T 4dq6_A 245 LQSSYVVL 252 (391)
T ss_dssp GCCEEEEC
T ss_pred cceEEEEe
Confidence 88765
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-22 Score=192.29 Aligned_cols=216 Identities=15% Similarity=0.066 Sum_probs=146.6
Q ss_pred cccceeEEEeecC---ccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHHH
Q 019931 105 ARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAAN 178 (334)
Q Consensus 105 ~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~An 178 (334)
+.+|++|+||+++ +++|+ .||+|++++.++- .+...+ ......+...+++++|+++++ .+++++++||++||
T Consensus 39 d~~g~~ylD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~ 116 (429)
T 1s0a_A 39 LSDGRRLVDGMSSWWAAIHGY-NHPQLNAAMKSQIDAMSHVM-FGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAV 116 (429)
T ss_dssp ETTSCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHHHCSCCC-CSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHH
T ss_pred eCCCCEEEEcCccHhhccCCC-CCHHHHHHHHHHHHhccccc-ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHH
Confidence 4567999999887 47887 5999999776532 111111 111124667899999999995 56788899999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh-----------cCCcEEEEee---------CCC
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER-----------TKMVEVFVYK---------HCD 238 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~-----------~~g~~v~~~~---------~~D 238 (334)
..+++++..... ..+ ..++.+|+.+..+|.+....+.+... ..+...+.++ +.|
T Consensus 117 ~~ai~~~~~~~~--~~g----~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 190 (429)
T 1s0a_A 117 EVAMKMALQYWQ--AKG----EARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERD 190 (429)
T ss_dssp HHHHHHHHHHHH--HHT----CCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGG
T ss_pred HHHHHHHHHHhc--ccC----CCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHH
Confidence 999986542100 000 00245666777889876655543210 0023444443 358
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCC-CCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCC
Q 019931 239 MSHLKTLLSCCTMRKKVVVTDSL-FSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERD 312 (334)
Q Consensus 239 ~~~Le~~l~~~~~~~~lVv~e~v-~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~ 312 (334)
+++|++++++..+++++|+++++ +|++|.+.| +++|+++|++||++||+||+|+. +|+.|... .+++++.+
T Consensus 191 ~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~--~g~~g~~~~~~~~~~~~- 267 (429)
T 1s0a_A 191 MVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATG--FGRTGKLFACEHAEIAP- 267 (429)
T ss_dssp GHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSSSGGGGGTCCC-
T ss_pred HHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhC--CcccchHHHhhhcCCCC-
Confidence 89999998753336789999999 899998887 99999999999999999999973 45555432 34455544
Q ss_pred ccEEEecCcccccC---CccEEeeC
Q 019931 313 VDICVGTLSKAAGC---QGGFIACR 334 (334)
Q Consensus 313 ~Div~~SlsKa~G~---~GG~i~~~ 334 (334)
|++ ||||+|++ ..|+++++
T Consensus 268 -d~~--t~sK~l~~G~~~iG~~~~~ 289 (429)
T 1s0a_A 268 -DIL--CLGKALTGGTMTLSATLTT 289 (429)
T ss_dssp -SEE--EECGGGGTSSSCCEEEEEC
T ss_pred -CEE--EecccccCCCccceEEEeC
Confidence 555 89999975 12777653
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-22 Score=188.16 Aligned_cols=205 Identities=15% Similarity=0.125 Sum_probs=149.1
Q ss_pred hhcccceeEEEeecCccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHH
Q 019931 103 TFARQFKRLLLFSGNDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAA 177 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~A 177 (334)
.++.+|+++|||++++ ..+..+|.|++++.+. ..+...+.. .| ..+.+++.+.+.+.+| .+.++++++|++|
T Consensus 17 ~~d~~g~~~idl~~~~-~~~~~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a 93 (377)
T 3fdb_A 17 KWTRYGQGVLPLWVAE-SDFSTCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRG 93 (377)
T ss_dssp HHHSSCTTSEECCSSC-CCSCCCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHH
T ss_pred eeeccCCCeeeecccC-CCCCCCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHH
Confidence 3556679999999986 6777899999987654 233323322 33 3333444444443332 4578899999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC---CHHHHHHHHhcCCCCcE
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC---DMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~---D~~~Le~~l~~~~~~~~ 254 (334)
+..++.++.++ ||.|++..+.|.+....++.. |.+++.++.+ |+++|++++++ +++
T Consensus 94 ~~~~~~~~~~~--------------gd~vl~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~d~~~l~~~l~~---~~~ 152 (377)
T 3fdb_A 94 LYIAIDHFTPA--------------QSKVIVPTPAYPPFFHLLSAT----QREGIFIDATGGINLHDVEKGFQA---GAR 152 (377)
T ss_dssp HHHHHHHHSCT--------------TCCEEEEESCCTHHHHHHHHH----TCCEEEEECTTSCCHHHHHHHHHT---TCC
T ss_pred HHHHHHHhcCC--------------CCEEEEcCCCcHhHHHHHHHc----CCEEEEccCCCCCCHHHHHHHhcc---CCC
Confidence 99999988764 677888888888888887776 8888888886 99999999986 578
Q ss_pred EEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCC-cccccccCCC-CCccEEEecCcccccCCc-
Q 019931 255 VVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNG-GGVAEQFNCE-RDVDICVGTLSKAAGCQG- 328 (334)
Q Consensus 255 lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G-~g~~~~~~~~-~~~Div~~SlsKa~G~~G- 328 (334)
+|++++++|++|.+.| +++|+++|++||++||+||+|+...++ | ........+. .+.++++.||||++|+.|
T Consensus 153 ~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 230 (377)
T 3fdb_A 153 SILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFD--GQHTVAAGVSDTAASVCITITAPSKAWNIAGL 230 (377)
T ss_dssp EEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSS--SCCCCGGGSCHHHHHHEEEEECSTTTTTCGGG
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcC--CCCCcccHHHccCCCcEEEEEeChHhccCcch
Confidence 8888899999999886 667788899999999999999975443 3 2211111111 234588999999998766
Q ss_pred --cEEee
Q 019931 329 --GFIAC 333 (334)
Q Consensus 329 --G~i~~ 333 (334)
||+++
T Consensus 231 r~G~~~~ 237 (377)
T 3fdb_A 231 KCAQIIF 237 (377)
T ss_dssp CCEEEEC
T ss_pred hheEEEe
Confidence 76553
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=198.44 Aligned_cols=191 Identities=16% Similarity=0.119 Sum_probs=144.4
Q ss_pred CHHHHHHHHHhcC-------CCCccccccCchHHH--HHHHHHHHhHhC----------CCcEEEeccHHHHHHHHHHHH
Q 019931 125 HPTIAKAAARHGM-------GPRGSALICGYTNYH--RLLESCLADLKK----------KEDCLLCPTGFAANMAVIVAV 185 (334)
Q Consensus 125 ~p~v~~a~~~~g~-------g~~~sr~~~G~~~~~--~~LE~~La~~~g----------~e~alv~~sG~~An~~ai~al 185 (334)
+|.+.++++++.. |+++++...++.+.+ .+|+++|+++++ .++++++++|++||..++.++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l 131 (435)
T 3piu_A 52 FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCL 131 (435)
T ss_dssp HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHh
Confidence 6778888877644 333344444444433 789999999887 567899999999999999998
Q ss_pred hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHH-HhhhcCCcEEEEeeCC-------CHHHHHHHHhcC---CCCcE
Q 019931 186 GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIR-IAERTKMVEVFVYKHC-------DMSHLKTLLSCC---TMRKK 254 (334)
Q Consensus 186 ~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~-ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~---~~~~~ 254 (334)
+++ +|.|+++.+.|.++...+. .. |.+++.++++ |+++|++++++. ..+++
T Consensus 132 ~~~--------------gd~vl~~~p~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 193 (435)
T 3piu_A 132 ADP--------------GEAVLIPTPYYPGFDRDLKWRT----GVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVK 193 (435)
T ss_dssp CCT--------------TCEEEEEESCCTTHHHHTTTTT----CCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEE
T ss_pred cCC--------------CCeEEECCCccccHHHHHHHhc----CCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeE
Confidence 764 7889999999998887766 44 8889888874 899999998752 23688
Q ss_pred EEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC---------CCccEEEecCcc
Q 019931 255 VVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE---------RDVDICVGTLSK 322 (334)
Q Consensus 255 lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~---------~~~Div~~SlsK 322 (334)
+|++++++||+|.+.| +++|+++|++||++||+||+|+.++++............. ++.+++++||||
T Consensus 194 ~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK 273 (435)
T 3piu_A 194 GVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSK 273 (435)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSS
T ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeec
Confidence 9999999999999877 5788899999999999999999876653222211111111 334588999999
Q ss_pred cccCCc---cEEee
Q 019931 323 AAGCQG---GFIAC 333 (334)
Q Consensus 323 a~G~~G---G~i~~ 333 (334)
+||..| |++++
T Consensus 274 ~~g~~G~r~G~~~~ 287 (435)
T 3piu_A 274 DLGLPGFRVGAIYS 287 (435)
T ss_dssp SSCCGGGCEEEEEE
T ss_pred ccCCCceeEEEEEe
Confidence 998766 88876
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-22 Score=195.64 Aligned_cols=207 Identities=17% Similarity=0.118 Sum_probs=145.5
Q ss_pred cceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccc--cccCchHHHHHHHHHHHhHh----C--CCcEEEeccHHHHH
Q 019931 107 QFKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSA--LICGYTNYHRLLESCLADLK----K--KEDCLLCPTGFAAN 178 (334)
Q Consensus 107 ~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr--~~~G~~~~~~~LE~~La~~~----g--~e~alv~~sG~~An 178 (334)
.|+++|||+++ +.++..+|.|++++.+.-.....+. ..++....+.+|++++++++ + .+.+++++++++++
T Consensus 67 ~~~~~i~l~~g-~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al 145 (449)
T 3qgu_A 67 PDAKIISLGIG-DTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKCDI 145 (449)
T ss_dssp TTCCCEECSSC-CCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHH
T ss_pred CCCCEEEeeCC-CCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHH
Confidence 35889999998 4889899999997754321100001 11122233578999999987 3 34566667777777
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcE----------EEEeeCCCHHHHHHHHhc
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVE----------VFVYKHCDMSHLKTLLSC 248 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~----------v~~~~~~D~~~Le~~l~~ 248 (334)
..+ .+++++ +|.|+++.+.|.++...++.. +.+ ++.+++++.+.+...+.+
T Consensus 146 ~~~-~~l~~~--------------gd~Vl~~~p~~~~~~~~~~~~----g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (449)
T 3qgu_A 146 ARI-QMMFGS--------------KPTVAVQDPSYPVYVDTSVMM----GMTGDHNGTGFDGIEYMVCNPDNHFFPDLSK 206 (449)
T ss_dssp HHH-HHHHCS--------------SSCEEEEESCCTHHHHHHHHH----TCSCCBCSSSBTTEEEEECCGGGTTCCCGGG
T ss_pred HHH-HHHhCC--------------CCEEEEcCCCChhHHHHHHHc----CCcccccccccceeEEEecccccCCcCChhH
Confidence 766 777654 788888889999988888877 666 788887644333222222
Q ss_pred CCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc
Q 019931 249 CTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 249 ~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G 325 (334)
. +++++|++++++||+|.+.+ +++|+++|++||++||+||+|+.+.++..+......+....+++|++.||||+||
T Consensus 207 ~-~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g 285 (449)
T 3qgu_A 207 A-KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAG 285 (449)
T ss_dssp C-CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGT
T ss_pred c-CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcC
Confidence 2 36788888899999999887 7788899999999999999999865543222222223323456799999999999
Q ss_pred CCc---cEEeeC
Q 019931 326 CQG---GFIACR 334 (334)
Q Consensus 326 ~~G---G~i~~~ 334 (334)
+.| ||++++
T Consensus 286 ~~G~r~G~~~~~ 297 (449)
T 3qgu_A 286 FTGVRLGWTVVP 297 (449)
T ss_dssp CTTCCCEEEECC
T ss_pred CccceeEEEecC
Confidence 777 898764
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=191.86 Aligned_cols=211 Identities=15% Similarity=0.110 Sum_probs=147.5
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAAN 178 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~An 178 (334)
++.+|++|+||+++ .++|+. ||+|++|+.++-.....+++..+..+...+|+++|+++++ .+.+++++||++|+
T Consensus 45 ~d~~g~~~lD~~~~~~~~~lG~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~ 123 (449)
T 3a8u_X 45 VDDKGRKVYDSLSGLWTCGAGHT-RKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECA 123 (449)
T ss_dssp EETTCCEEEETTHHHHTCTTCBS-CHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHH
T ss_pred EECCCCEEEECCccHhhccCCCC-CHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHH
Confidence 45677999999875 478987 9999998876533211233324556788999999999995 46788889999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh-----c-----CCcEEEEee----CC----C--
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER-----T-----KMVEVFVYK----HC----D-- 238 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~-----~-----~g~~v~~~~----~~----D-- 238 (334)
..+++++..... ..+. .+++.+|+.+..+|+.+...+.+... . .+..++.++ ++ |
T Consensus 124 ~~al~~~~~~~~--~~g~---~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~ 198 (449)
T 3a8u_X 124 LTAVKMVRAYWR--LKGQ---ATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPK 198 (449)
T ss_dssp HHHHHHHHHHHH--HTTC---TTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCS
T ss_pred HHHHHHHHHHHH--hcCC---CCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChH
Confidence 999988754100 0000 01245666688899887766655410 0 023333322 21 5
Q ss_pred ------HHHHHHHHhcCC-CCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcc-cccc
Q 019931 239 ------MSHLKTLLSCCT-MRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG-VAEQ 306 (334)
Q Consensus 239 ------~~~Le~~l~~~~-~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g-~~~~ 306 (334)
+++||+++++.. +++++|++++++|++|.+.| +++|+++|++||++||+||+|+. +|++|.. ..++
T Consensus 199 ~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~--~g~~g~~~~~~~ 276 (449)
T 3a8u_X 199 EGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITG--FGRTGSMFGADS 276 (449)
T ss_dssp SSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccC--ccccCcchhhhh
Confidence 899999987432 26789999999999998888 99999999999999999999962 4555543 2355
Q ss_pred cCCCCCccEEEecCcccccC
Q 019931 307 FNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 307 ~~~~~~~Div~~SlsKa~G~ 326 (334)
+++.+ |++ ||||+|++
T Consensus 277 ~~~~~--di~--s~sK~l~~ 292 (449)
T 3a8u_X 277 FGVTP--DLM--CIAKQVTN 292 (449)
T ss_dssp HTCCC--SEE--EECGGGGT
T ss_pred cCCCC--CEE--EEcccccC
Confidence 66544 555 89999975
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-21 Score=188.24 Aligned_cols=184 Identities=17% Similarity=0.170 Sum_probs=142.4
Q ss_pred CHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCe
Q 019931 125 HPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKI 204 (334)
Q Consensus 125 ~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd 204 (334)
.+.+.+++..+......+.+..+..+..+++++++++++|.++++++++|++|+..++.++.++ ||
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~~--------------gd 104 (398)
T 2rfv_A 39 FDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQ--------------GD 104 (398)
T ss_dssp CSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCT--------------TC
T ss_pred cCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCC--------------CC
Confidence 3555666554433333333333356888999999999999999999999999999999988754 78
Q ss_pred EEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCE
Q 019931 205 AIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFL 284 (334)
Q Consensus 205 ~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~ 284 (334)
.|++....|.++...+.......|.+++.++.+|+++|++.+++ ++++|++++++|++|.+.|+++|.++|++||++
T Consensus 105 ~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~ 181 (398)
T 2rfv_A 105 HIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRP---ETKVVYIETPANPTLSLVDIETVAGIAHQQGAL 181 (398)
T ss_dssp EEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCT---TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCE
T ss_pred EEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCE
Confidence 88888889988877662111112889999999999999998864 789999999999999999999999999999999
Q ss_pred EEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCC----ccEEeeC
Q 019931 285 LVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQ----GGFIACR 334 (334)
Q Consensus 285 LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~----GG~i~~~ 334 (334)
+|+||+|+.+.++. . . ..++|+++.|+||+|++. ||+++++
T Consensus 182 li~De~~~~~~~~~---~----~--~~~~di~~~s~sK~~~~~g~~~~G~~~~~ 226 (398)
T 2rfv_A 182 LVVDNTFMSPYCQQ---P----L--QLGADIVVHSVTKYINGHGDVIGGIIVGK 226 (398)
T ss_dssp EEEECTTTCTTTCC---G----G--GGTCSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred EEEECCCcccccCC---c----h--hhCCcEEEEeCcccccCCCCceEEEEEEC
Confidence 99999999876532 1 1 124689999999999753 5888764
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-21 Score=185.83 Aligned_cols=200 Identities=12% Similarity=0.070 Sum_probs=142.8
Q ss_pred ccceeEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHHHHH
Q 019931 106 RQFKRLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAANMA 180 (334)
Q Consensus 106 ~~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~An~~ 180 (334)
.+|+++|||++++ ..+..+|+|++++.+.- .+..++....|...+.+++.+.+.+.+| .+.++++++|++|+..
T Consensus 28 ~~g~~~i~l~~g~-~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~ 106 (391)
T 3h14_A 28 EAGRRIIHMEVGQ-PGTGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLL 106 (391)
T ss_dssp HTTCCCEECCCSS-CSSCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHH
T ss_pred hcCCCeEEccCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHH
Confidence 3458999999987 56777999999886643 2222232233333444444444443333 3578899999999999
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCCc
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMRK 253 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~~ 253 (334)
++.+++++ ||.|++..+.|.+....++.. |.+++.++.+ |+++|+++ ++
T Consensus 107 ~~~~l~~~--------------gd~vl~~~p~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~------~~ 162 (391)
T 3h14_A 107 AFTALFDS--------------GDRVGIGAPGYPSYRQILRAL----GLVPVDLPTAPENRLQPVPADFAGL------DL 162 (391)
T ss_dssp HHHHHCCT--------------TCEEEEEESCCHHHHHHHHHT----TCEEEEEECCGGGTTSCCHHHHTTS------CC
T ss_pred HHHHhcCC--------------CCEEEEcCCCCccHHHHHHHc----CCEEEEeecCcccCCCCCHHHHHhc------CC
Confidence 99988764 788888888888888777766 8888888864 56665543 57
Q ss_pred EEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc--
Q 019931 254 KVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG-- 328 (334)
Q Consensus 254 ~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G-- 328 (334)
++|++++++||+|.+.| +++|+++|++||++||+||+|+...++........ . .+.+|+++||||++|..|
T Consensus 163 ~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~---~-~~~~i~~~s~sK~~g~~G~r 238 (391)
T 3h14_A 163 AGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALE---L-TDECYVINSFSKYFSMTGWR 238 (391)
T ss_dssp SEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG---T-CSSSEEEEESSSTTCCTTSC
T ss_pred eEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhh---c-CCCEEEEEechhccCCccce
Confidence 88888899999999988 88899999999999999999997655432222222 2 344699999999998666
Q ss_pred -cEEeeC
Q 019931 329 -GFIACR 334 (334)
Q Consensus 329 -G~i~~~ 334 (334)
||++++
T Consensus 239 ~G~~~~~ 245 (391)
T 3h14_A 239 VGWMVVP 245 (391)
T ss_dssp CEEEECC
T ss_pred eEEEEeC
Confidence 888763
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=187.31 Aligned_cols=197 Identities=14% Similarity=0.104 Sum_probs=151.3
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~ 186 (334)
..++||+++.. .+..+|.+++++.+.-... . .++......+|+++++++++.+ .++++++|++|+..++.++.
T Consensus 25 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~--~--~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~ 99 (381)
T 1v2d_A 25 LGAVNLGQGFP-SNPPPPFLLEAVRRALGRQ--D--QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV 99 (381)
T ss_dssp HTCEECCCCSC-SSCCCHHHHHHHHHHTTTS--C--SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred CCeEEecCCCC-CCCCCHHHHHHHHHHHHHh--c--CCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC
Confidence 35789998863 6668899999887654321 1 1222223578999999999864 68888999999999999886
Q ss_pred hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC--------CHHHHHHHHhcCCCCcEEEEE
Q 019931 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC--------DMSHLKTLLSCCTMRKKVVVT 258 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~--------D~~~Le~~l~~~~~~~~lVv~ 258 (334)
.+ +|.|++..+.|.++...++.. |.+++.++.+ |+++|++++++ ++++|++
T Consensus 100 ~~--------------gd~Vl~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~~d~~~l~~~l~~---~~~~v~~ 158 (381)
T 1v2d_A 100 GP--------------GDEVVVLEPFFDVYLPDAFLA----GAKARLVRLDLTPEGFRLDLSALEKALTP---RTRALLL 158 (381)
T ss_dssp CT--------------TCEEEEEESCCTTHHHHHHHT----TCEEEEEECEEETTEEECCHHHHHTTCCT---TEEEEEE
T ss_pred CC--------------CCEEEEcCCCchhHHHHHHHc----CCEEEEEeCCCCCccCCcCHHHHHHhcCc---CCEEEEE
Confidence 54 778888888888887776665 7888777653 78888887753 6889998
Q ss_pred cCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEe
Q 019931 259 DSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIA 332 (334)
Q Consensus 259 e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~ 332 (334)
++++|++|.+.| +++|+++|++||++||+||+|+.+.+|..+..+... ..++|++++||||+||+.| ||++
T Consensus 159 ~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~---~~~~~~~~~s~sK~~~~~G~r~G~~~ 235 (381)
T 1v2d_A 159 NTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF---APERTFTVGSAGKRLEATGYRVGWIV 235 (381)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH---CTTTEEEEEEHHHHTTCGGGCCEEEE
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh---cCCCEEEEeechhhcCCcccceEEEE
Confidence 999999999877 889999999999999999999977665443333322 3457899999999998665 8887
Q ss_pred eC
Q 019931 333 CR 334 (334)
Q Consensus 333 ~~ 334 (334)
++
T Consensus 236 ~~ 237 (381)
T 1v2d_A 236 GP 237 (381)
T ss_dssp CC
T ss_pred eC
Confidence 63
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-21 Score=182.27 Aligned_cols=197 Identities=14% Similarity=0.105 Sum_probs=152.7
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHHh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al~ 186 (334)
+++|||++|++ .+..+|.+++++.+.-.....+ ..+...+++++++++++. +.++++++|++|+..++.++.
T Consensus 32 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~y-----~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~ 105 (363)
T 3ffh_A 32 TKITKLSSNEN-PLGTSKKVAAIQANSSVETEIY-----PDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLL 105 (363)
T ss_dssp SCCEECSSCSC-TTCCCHHHHHHHHTCBSCCCBC---------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC
T ss_pred CceEEccCCCC-CCCCCHHHHHHHHHHHHHhhcC-----CCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHc
Confidence 68999999864 5667899999988754322111 123458899999999995 568888999999999999886
Q ss_pred hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCC
Q 019931 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSL 261 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v 261 (334)
++ +|.|++..+.|.++...++.. |.+++.++.+ |+++|++++++ ++++|+++++
T Consensus 106 ~~--------------gd~vl~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~v~~~~p 164 (363)
T 3ffh_A 106 DT--------------TTNTVMATPTFVQYRQNALIE----GAEVREIPLLQDGEHDLEGMLNAIDE---KTTIVWICNP 164 (363)
T ss_dssp ST--------------TCEEEEEESSCHHHHHHHHHH----TCEEEEEECCTTSCCCHHHHHHHCCT---TEEEEEEESS
T ss_pred cC--------------CCEEEEcCCChHHHHHHHHHc----CCEEEEecCCCCCCcCHHHHHHhccc---CCCEEEEeCC
Confidence 64 778888888888888877776 8899998876 89999998864 7899999999
Q ss_pred CCCCCCccCHHHHHHHHHHc--CCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 262 FSMDGDFAPMVELVKLRRKY--GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 262 ~n~~G~~~pL~~L~ela~k~--ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
+|++|.+.|+++|.++++.+ |+++|+||+|+.++++ ...+...... .++.+|++.||||.+|..| ||++++
T Consensus 165 ~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 240 (363)
T 3ffh_A 165 NNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTP-QPEKHEKLVR-TYKNLIITRTFSKIYGLASARVGYGIAD 240 (363)
T ss_dssp CTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSS-CCCCCGGGGG-TCTTEEEEEESSSTTCCSSCCCEEEEEC
T ss_pred CCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCc-cccCHHHHhh-cCCCEEEEeechhhhcCchhceeeeecC
Confidence 99999999999999999888 9999999999965442 1122222222 2444688999999998766 888753
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=190.69 Aligned_cols=161 Identities=17% Similarity=0.093 Sum_probs=133.0
Q ss_pred chHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC
Q 019931 148 YTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK 227 (334)
Q Consensus 148 ~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~ 227 (334)
..+..++||++|++++|.+++++++||++|+..++.+++++ ||.|++....|......+.......
T Consensus 79 ~~p~~~~l~~~la~~~g~~~~~~~~sG~~Ai~~al~~l~~~--------------Gd~Vi~~~~~y~~~~~~~~~~~~~~ 144 (414)
T 3ndn_A 79 GNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALLGA--------------GDRLVAARSLFGSCFVVCSEILPRW 144 (414)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCCT--------------TCEEEEESCCCHHHHHHHHTHHHHT
T ss_pred CChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhCC--------------CCEEEEcCCccchHHHHHHHHHHHc
Confidence 45788999999999999999999999999999999887654 7778877777777665554311223
Q ss_pred CcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCccccccc
Q 019931 228 MVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 228 g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
+.+++.++.+|+++|++++++ ++++|++++++||+|.+.|+++|+++|+++|++||+|++|+.+.+..
T Consensus 145 g~~~~~v~~~d~~~l~~ai~~---~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~--------- 212 (414)
T 3ndn_A 145 GVQTVFVDGDDLSQWERALSV---PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQ--------- 212 (414)
T ss_dssp TCEEEEECTTCHHHHHHHTSS---CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC---------
T ss_pred CcEEEEeCCCCHHHHHHhcCC---CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCC---------
Confidence 889999999999999999874 78999999999999999999999999999999999999999764321
Q ss_pred CCCCCccEEEecCcccccCC----ccEEeeC
Q 019931 308 NCERDVDICVGTLSKAAGCQ----GGFIACR 334 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~~----GG~i~~~ 334 (334)
.+..++|+++.|+||+||+. ||+++++
T Consensus 213 ~~~~g~div~~S~sK~l~~~G~~~~G~vv~~ 243 (414)
T 3ndn_A 213 GFPLGVDVVVYSGTKHIDGQGRVLGGAILGD 243 (414)
T ss_dssp CGGGTCSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred chhcCCCeEeccCCccccCCCCceEEEEEEC
Confidence 11234689999999999764 4888764
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-21 Score=185.57 Aligned_cols=202 Identities=13% Similarity=0.072 Sum_probs=151.3
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhc-CC----CCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHG-MG----PRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAAN 178 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g----~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~An 178 (334)
++++|||+++ +..+..+|.+++++++.- .+ ..++....|...+.+++.+.+.+.+| .+.++++++|++|+
T Consensus 34 ~~~~i~l~~~-~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al 112 (398)
T 3ele_A 34 KENVYDFSIG-NPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASL 112 (398)
T ss_dssp GGGCEECCSC-CCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred CCCeEEeecC-CCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHH
Confidence 3789999998 577778999999775532 11 12233345555666666666666655 35688889999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCC-eEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCC
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEK-IAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTM 251 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~g-d~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~ 251 (334)
..++.+++.+ | |.|++..+.|..+...++.. |.+++.++.+ |+++|++++++
T Consensus 113 ~~~~~~l~~~--------------g~d~vl~~~p~~~~~~~~~~~~----g~~~~~v~~~~~~~~~d~~~l~~~l~~--- 171 (398)
T 3ele_A 113 SICFRALTSD--------------AYDEFITIAPYFPEYKVFVNAA----GARLVEVPADTEHFQIDFDALEERINA--- 171 (398)
T ss_dssp HHHHHHHCCS--------------TTCEEEEESSCCTHHHHHHHHT----TCEEEEECCCTTTSSCCHHHHHHTCCT---
T ss_pred HHHHHHHcCC--------------CCCEEEEeCCCchhhHHHHHHc----CCEEEEEecCCcCCcCCHHHHHHHhCc---
Confidence 9999988764 7 88888888888888877766 8888888764 78888888764
Q ss_pred CcEEEEEcCCCCCCCCccC---HHHHHHHHHH------cCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcc
Q 019931 252 RKKVVVTDSLFSMDGDFAP---MVELVKLRRK------YGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSK 322 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p---L~~L~ela~k------~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsK 322 (334)
++++|++++++||+|.+.| +++|+++|++ ||++||+||+|+...++ |......... .+.+|+++||||
T Consensus 172 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~-~~~~i~~~s~sK 248 (398)
T 3ele_A 172 HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYD--GIKVPFVTKY-YDNTLVCYSYSK 248 (398)
T ss_dssp TEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCT--TCCCCCGGGT-CSSEEEEEESTT
T ss_pred CCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccC--CCCcCChHhh-cCCeEEEEehhh
Confidence 7899999999999999988 6777899999 99999999999975553 3222111121 235699999999
Q ss_pred cccCCc---cEEeeC
Q 019931 323 AAGCQG---GFIACR 334 (334)
Q Consensus 323 a~G~~G---G~i~~~ 334 (334)
+||..| ||++++
T Consensus 249 ~~~~~G~r~G~~~~~ 263 (398)
T 3ele_A 249 SLSLPGERIGYVLVP 263 (398)
T ss_dssp TSSCTTTCCEEEECC
T ss_pred cCCCccceeEEEEEc
Confidence 998766 888763
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-22 Score=202.36 Aligned_cols=192 Identities=18% Similarity=0.179 Sum_probs=121.4
Q ss_pred EeecCccCCCCCCHHHHHHHH-----HhcCCCCccccccCchHHHHHHH----HHHHhHhCCCc----EEEe-ccHHHHH
Q 019931 113 LFSGNDYLGLSSHPTIAKAAA-----RHGMGPRGSALICGYTNYHRLLE----SCLADLKKKED----CLLC-PTGFAAN 178 (334)
Q Consensus 113 ~f~sn~yLgl~~~p~v~~a~~-----~~g~g~~~sr~~~G~~~~~~~LE----~~La~~~g~e~----alv~-~sG~~An 178 (334)
.++|++|+ +|+|++|+. +|+.|..++|++.|+ +.+.+|| +++++++|.+. +.++ +||++||
T Consensus 59 lias~n~~----~~~V~eA~~~~l~~~y~~G~~g~r~~~G~-~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An 133 (490)
T 2a7v_A 59 LIASENFC----SRAALEALGSCLNNKYSEGYPGKRYYGGA-EVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPAN 133 (490)
T ss_dssp CCTTCCCC----CHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHH
T ss_pred EECCCCCC----CHHHHHHHHHHHcCCCccCCCcccccCcc-HHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHH
Confidence 34666763 899999763 477788888988886 4556777 89999999987 5555 6999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhH-HH-------HHHhhhcCCcEEEEee------CCCHHHHHH
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASII-DG-------IRIAERTKMVEVFVYK------HCDMSHLKT 244 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~-~g-------~~ls~~~~g~~v~~~~------~~D~~~Le~ 244 (334)
..++.+++++ ||.|+++.+.|.+.. ++ +.++. ...+++.|+ +.|+++|++
T Consensus 134 ~~al~al~~p--------------GD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g--~~~~~~~~~vd~~~~~iD~d~le~ 197 (490)
T 2a7v_A 134 LAVYTALLQP--------------HDRIMGLDLPDGGHLTHGYMSDVKRISATS--IFFESMPYKLNPKTGLIDYNQLAL 197 (490)
T ss_dssp HHHHHHHCCS--------------CEECCC---------------------------------CCBCTTTCSBCHHHHHH
T ss_pred HHHHHHHcCC--------------CCEecccCccccccccchhhhcchhHHHcC--CeEEEEecccccccCCcCHHHHHH
Confidence 9999999875 899999888876532 11 22331 112344453 349999999
Q ss_pred HHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc
Q 019931 245 LLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA 324 (334)
Q Consensus 245 ~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~ 324 (334)
++++. ++++|++..+.+ |...|+++|+++|++||++|++|+||..|+++. |.. ....+.+|++++|+||+|
T Consensus 198 ~l~~~--~~klIi~~~s~~--~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~---g~~--~~~~~~aDiv~~S~hK~l 268 (490)
T 2a7v_A 198 TARLF--RPRLIIAGTSAY--ARLIDYARMREVCDEVKAHLLADMAHISGLVAA---KVI--PSPFKHADIVTTTTHKTL 268 (490)
T ss_dssp HHHHH--CCSEEEECCSSC--CSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHT---TSS--CCGGGTCSEEEEESSGGG
T ss_pred HHhhc--CCcEEEEcCCCC--CCcccHHHHHHHHHHcCCEEEEccccccccccC---CcC--CCCCCCCCEEEECCcccC
Confidence 99753 467777665443 346789999999999999999999999886642 221 111136899999999999
Q ss_pred -cCCccEEeeC
Q 019931 325 -GCQGGFIACR 334 (334)
Q Consensus 325 -G~~GG~i~~~ 334 (334)
|..||+|+++
T Consensus 269 ~Gp~GG~i~~~ 279 (490)
T 2a7v_A 269 RGARSGLIFYR 279 (490)
T ss_dssp CSCSCEEEEEE
T ss_pred ccccchheeec
Confidence 5689999873
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-21 Score=186.21 Aligned_cols=198 Identities=17% Similarity=0.114 Sum_probs=147.3
Q ss_pred cceeEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC--------CCcEEEeccHHHH
Q 019931 107 QFKRLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK--------KEDCLLCPTGFAA 177 (334)
Q Consensus 107 ~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g--------~e~alv~~sG~~A 177 (334)
+|++++||.++++ ++..+|.+++++ +.- .+...+....| ..+++++++++++ .+.++++++|++|
T Consensus 41 ~g~~~i~l~~~~~-~~~~~~~v~~a~-~~l~~~~~~y~~~~g----~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a 114 (409)
T 2gb3_A 41 RGVRIHHLNIGQP-DLKTPEVFFERI-YENKPEVVYYSHSAG----IWELREAFASYYKRRQRVDVKPENVLVTNGGSEA 114 (409)
T ss_dssp TTCEEEECSSCCC-CSCCCTHHHHHH-HHTCCSSCCCCCTTC----CHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHH
T ss_pred cCCCEEeccCCCC-CCCCCHHHHHHH-HHHhcCCCCCCCCCC----cHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHH
Confidence 4589999999986 666789999988 543 22222222222 3567777777653 2578899999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCC------HHHHHHHHhcCCC
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCD------MSHLKTLLSCCTM 251 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D------~~~Le~~l~~~~~ 251 (334)
+..++.++.++ ||.|++..+.|.++...++.. |.+++.++.++ +++|++++++
T Consensus 115 ~~~~~~~~~~~--------------gd~Vl~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~~~~l~~~l~~--- 173 (409)
T 2gb3_A 115 ILFSFAVIANP--------------GDEILVLEPFYANYNAFAKIA----GVKLIPVTRRMEEGFAIPQNLESFINE--- 173 (409)
T ss_dssp HHHHHHHHCCT--------------TCEEEEEESCCTHHHHHHHHH----TCEEEEEECCGGGTSCCCTTGGGGCCT---
T ss_pred HHHHHHHhCCC--------------CCEEEEcCCCchhHHHHHHHc----CCEEEEeccCCCCCCccHHHHHHhhCc---
Confidence 99999988654 788888888888888887776 78888888652 5677776653
Q ss_pred CcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc
Q 019931 252 RKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G 328 (334)
++++|++++++|++|.+.| +++|+++|++||++||+||+|+.+.++....++ ..++ .+.||+++||||+||+.|
T Consensus 174 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~--~~~~-~~~~i~~~s~sK~~g~~G 250 (409)
T 2gb3_A 174 RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA--LSIE-SDKVVVIDSVSKKFSACG 250 (409)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG--GGSC-CTTEEEEEESTTTTTCGG
T ss_pred CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc--cccC-CCCEEEEecchhccCCcc
Confidence 6888899999999998865 889999999999999999999986553211121 1122 346899999999998666
Q ss_pred ---cEEeeC
Q 019931 329 ---GFIACR 334 (334)
Q Consensus 329 ---G~i~~~ 334 (334)
|+++++
T Consensus 251 ~r~G~~~~~ 259 (409)
T 2gb3_A 251 ARVGCLITR 259 (409)
T ss_dssp GCCEEEECS
T ss_pred ceEEEEEEC
Confidence 888764
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=190.09 Aligned_cols=199 Identities=16% Similarity=0.147 Sum_probs=148.7
Q ss_pred cceeEEEeecCccC---CCCCCHHHHHHHHHhcC-C-CCccccccCchHHHHHHHHHHHhHhC-------CCcEEEeccH
Q 019931 107 QFKRLLLFSGNDYL---GLSSHPTIAKAAARHGM-G-PRGSALICGYTNYHRLLESCLADLKK-------KEDCLLCPTG 174 (334)
Q Consensus 107 ~g~~~l~f~sn~yL---gl~~~p~v~~a~~~~g~-g-~~~sr~~~G~~~~~~~LE~~La~~~g-------~e~alv~~sG 174 (334)
.++++|||+.+++. .+..+|.|++++.+.-. + ..++.. .....+++++++++++ .+.++++++|
T Consensus 52 ~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~----~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~ 127 (427)
T 3dyd_A 52 PNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAP----SIGFLSSREEIASYYHCPEAPLEAKDVILTSGC 127 (427)
T ss_dssp TTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCC----TTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSH
T ss_pred CCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCC----CCCcHHHHHHHHHHHhhcCCCCChHHEEEecCc
Confidence 45889999998864 46788999998765421 1 111211 2234778889999887 4578888999
Q ss_pred HHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHh
Q 019931 175 FAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLS 247 (334)
Q Consensus 175 ~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~ 247 (334)
++|+..++.++.++ +|.|++..+.|......++.. |.+++.++.. |+++|+++++
T Consensus 128 t~al~~~~~~l~~~--------------gd~vl~~~p~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~l~ 189 (427)
T 3dyd_A 128 SQAIDLCLAVLANP--------------GQNILVPRPGFSLYKTLAESM----GIEVKLYNLLPEKSWEIDLKQLEYLID 189 (427)
T ss_dssp HHHHHHHHHHHCCT--------------TCEEEEEESCCTHHHHHHHHT----TCEEEEEEEEGGGTTEECHHHHHSSCC
T ss_pred HHHHHHHHHHhcCC--------------CCEEEEcCCCchhHHHHHHHc----CCEEEEEecccccCCCCCHHHHHHHhc
Confidence 99999999988764 777888778887777777666 7888877652 7888887775
Q ss_pred cCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccc--cccCCCCCccEEEecCcc
Q 019931 248 CCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA--EQFNCERDVDICVGTLSK 322 (334)
Q Consensus 248 ~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~--~~~~~~~~~Div~~SlsK 322 (334)
+ ++++|++.+++||+|.+.| +++|+++|++||+++|+||+|+...++ |.... ..++..++ .|+++||||
T Consensus 190 ~---~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~--g~~~~~~~~~~~~~~-vi~~~S~sK 263 (427)
T 3dyd_A 190 E---KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFS--DCKYEPLATLSTDVP-ILSCGGLAK 263 (427)
T ss_dssp T---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCS--SCCCCCGGGGCSSCC-EEEEEESTT
T ss_pred c---CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccC--CCcCccHHHhCCCCc-EEEEeeccc
Confidence 4 6888889999999999999 999999999999999999999975443 33322 22222222 377899999
Q ss_pred cccCCc---cEEee
Q 019931 323 AAGCQG---GFIAC 333 (334)
Q Consensus 323 a~G~~G---G~i~~ 333 (334)
+||+.| |++++
T Consensus 264 ~~~~~G~riG~~~~ 277 (427)
T 3dyd_A 264 RWLVPGWRLGWILI 277 (427)
T ss_dssp TSSCGGGCCEEEEE
T ss_pred cCCCcCcceEEEEe
Confidence 998776 88765
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-21 Score=181.78 Aligned_cols=198 Identities=12% Similarity=0.095 Sum_probs=146.4
Q ss_pred eEEEeecCccCCCCCCHHHHHHHHHhcC-C--CC--ccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHH
Q 019931 110 RLLLFSGNDYLGLSSHPTIAKAAARHGM-G--PR--GSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVI 182 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~v~~a~~~~g~-g--~~--~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai 182 (334)
.|+|++++. ..+|.|++++.++-. + .. .++..++......++++++++++|.+ .++++++|++|+..++
T Consensus 3 ~yld~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~ 78 (384)
T 1eg5_A 3 VYFDNNATT----RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWIL 78 (384)
T ss_dssp EECBTTTCC----CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHH
T ss_pred EEEecCccC----CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHH
Confidence 356665553 468999997765421 1 11 12222333566789999999999965 7888899999999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVV 257 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv 257 (334)
.++... ...+||.|++....|.+....+..... .|.+++.++. .|+++|++++++ ++++|+
T Consensus 79 ~~~~~~----------~~~~gd~vl~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~~v~ 144 (384)
T 1eg5_A 79 KTVAET----------FEKRKRTIITTPIEHKAVLETMKYLSM-KGFKVKYVPVDSRGVVKLEELEKLVDE---DTFLVS 144 (384)
T ss_dssp HHHHHH----------TTTTCCEEEECTTSCHHHHHHHHHHHH-TTCEEEECCBCTTSCBCHHHHHHHCCT---TEEEEE
T ss_pred Hhhhhh----------ccCCCCEEEECCCCchHHHHHHHHHHh-cCCEEEEEccCCCCccCHHHHHHHhCC---CCeEEE
Confidence 988720 001378899898999887766632211 1788888876 378999988864 689999
Q ss_pred EcCCCCCCCCccCHHHHHHHHHHcC--CEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCc-cEEee
Q 019931 258 TDSLFSMDGDFAPMVELVKLRRKYG--FLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQG-GFIAC 333 (334)
Q Consensus 258 ~e~v~n~~G~~~pL~~L~ela~k~g--a~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~G-G~i~~ 333 (334)
+++++|++|.+.|+++|.++|++|| ++||+||+|++|.. .. ++. .++|+++.|+||.+|+.| |++++
T Consensus 145 ~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~---~~------~~~~~~~di~~~s~sK~~g~~G~G~~~~ 215 (384)
T 1eg5_A 145 IMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKI---PF------SLEKLEVDYASFSAHKFHGPKGVGITYI 215 (384)
T ss_dssp EESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTS---CC------CCTTTCCSEEEEEGGGGTSCTTCEEEEE
T ss_pred EECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCc---cc------CchhcCCCEEEecHHHhcCCCceEEEEE
Confidence 9999999999999999999999999 99999999985421 11 111 246899999999999877 88876
Q ss_pred C
Q 019931 334 R 334 (334)
Q Consensus 334 ~ 334 (334)
+
T Consensus 216 ~ 216 (384)
T 1eg5_A 216 R 216 (384)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=190.17 Aligned_cols=208 Identities=19% Similarity=0.147 Sum_probs=147.0
Q ss_pred cccceeEEEeecCc---cCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHHH
Q 019931 105 ARQFKRLLLFSGND---YLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAAN 178 (334)
Q Consensus 105 ~~~g~~~l~f~sn~---yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~An 178 (334)
+.+|++|+||+++. +||+ .||+|++++.+.- .+...+ ..+..+.+.+|+++|+++++ .+.+++++||++|+
T Consensus 39 d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~ 115 (433)
T 1zod_A 39 DADGRAILDFTSGQMSAVLGH-CHPEIVSVIGEYAGKLDHLF--SEMLSRPVVDLATRLANITPPGLDRALLLSTGAESN 115 (433)
T ss_dssp CTTCCEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCC--TTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHH
T ss_pred eCCCCEEEEcccchhccccCC-CCHHHHHHHHHHHHhCcccc--cccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHH
Confidence 45679999997764 6786 6999999775432 111111 23335778999999999997 46788889999999
Q ss_pred HHHHHHHhh-hhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh---------cCCcEEEEee------CC-----
Q 019931 179 MAVIVAVGN-IASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER---------TKMVEVFVYK------HC----- 237 (334)
Q Consensus 179 ~~ai~al~~-~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~---------~~g~~v~~~~------~~----- 237 (334)
..+++++.. + +++.+|+.+..+|+.....+.+... ..+...+.++ ++
T Consensus 116 ~~a~~~~~~~~------------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (433)
T 1zod_A 116 EAAIRMAKLVT------------GKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAY 183 (433)
T ss_dssp HHHHHHHHHHH------------TCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEE
T ss_pred HHHHHHHHHhh------------CCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhh
Confidence 999986542 2 1345777888899887665544210 0133333332 23
Q ss_pred ----CHHHHHHHHhcCC-CCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-cccc
Q 019931 238 ----DMSHLKTLLSCCT-MRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQF 307 (334)
Q Consensus 238 ----D~~~Le~~l~~~~-~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~ 307 (334)
|+++|++++++.. +++++|++++++|++|.+.| +++|+++|++||++||+||+|+. +|++|... .+++
T Consensus 184 ~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~--~g~~g~~~~~~~~ 261 (433)
T 1zod_A 184 DYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTG--VGRTGTMFACQRD 261 (433)
T ss_dssp CHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSSSTHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--CCcCchHhHHhhc
Confidence 3889999887421 36789999999999998776 99999999999999999999983 45555533 3555
Q ss_pred CCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 308 NCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
++.+ |++ ||||+||+ | |+++++
T Consensus 262 ~~~~--di~--s~sK~~~~-G~~ig~~~~~ 286 (433)
T 1zod_A 262 GVTP--DIL--TLSKTLGA-GLPLAAIVTS 286 (433)
T ss_dssp TCCC--SEE--EECHHHHT-TSSCEEEEEC
T ss_pred CCCC--CEE--EecccccC-CCCeeEEEEh
Confidence 6544 444 89999986 5 787764
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=186.83 Aligned_cols=156 Identities=18% Similarity=0.174 Sum_probs=132.6
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHH----HHHHhh
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIID----GIRIAE 224 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~----g~~ls~ 224 (334)
.+..++|++++++++|.++++++++|++|+..++.+++++ ||.|++..+.|.++.. .++..
T Consensus 61 ~~~~~~l~~~ia~~~g~~~~i~~~~g~~ai~~~~~~l~~~--------------gd~Vl~~~~~y~~~~~~~~~~~~~~- 125 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKA--------------GDHLISDECLYGCTHALFEHALTKF- 125 (404)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCT--------------TCEEEEESCCCHHHHHHHHTHHHHT-
T ss_pred ChHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHhCC--------------CCEEEEeCCCchhHHHHHHHHHHHc-
Confidence 5777899999999999999999999999999999988764 7888888888888776 34434
Q ss_pred hcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHH-cCCEEEEecCcccccccCCCccc
Q 019931 225 RTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRK-YGFLLVLDDAHGTFVCGKNGGGV 303 (334)
Q Consensus 225 ~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k-~ga~LivDeAh~~Gv~G~~G~g~ 303 (334)
|.+++.++.+|+++|++++++ ++++|++++++||+|.+.|+++|.++|++ +|+++|+||+|+.+++.. .+
T Consensus 126 ---g~~~~~v~~~d~~~l~~~i~~---~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~---~~ 196 (404)
T 1e5e_A 126 ---GIQVDFINTAIPGEVKKHMKP---NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITN---PV 196 (404)
T ss_dssp ---TCEEEEECTTSTTHHHHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCC---GG
T ss_pred ---CCEEEEECCCCHHHHHHhcCC---CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCC---cc
Confidence 889999999999999998864 78999999999999999999999999999 999999999999875421 11
Q ss_pred ccccCCCCCccEEEecCcccccCC----ccEEeeC
Q 019931 304 AEQFNCERDVDICVGTLSKAAGCQ----GGFIACR 334 (334)
Q Consensus 304 ~~~~~~~~~~Div~~SlsKa~G~~----GG~i~~~ 334 (334)
..++||++.|+||+||+. ||+++++
T Consensus 197 ------~~~~di~~~S~sK~~~~~g~ri~G~~~~~ 225 (404)
T 1e5e_A 197 ------DFGVDVVVHSATKYINGHTDVVAGLICGK 225 (404)
T ss_dssp ------GGTCSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred ------ccCCEEEEEcCccccCCCCCCeEEEEEEC
Confidence 124789999999999864 5888764
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-22 Score=194.16 Aligned_cols=206 Identities=17% Similarity=0.132 Sum_probs=140.2
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHh----cCCCCccccccCchHHHHHHHHHHHhHh----CC--CcEEEeccHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARH----GMGPRGSALICGYTNYHRLLESCLADLK----KK--EDCLLCPTGFAA 177 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~----g~g~~~sr~~~G~~~~~~~LE~~La~~~----g~--e~alv~~sG~~A 177 (334)
++++|||++++|. +..+|.|++++.++ +.+.+.+ .++....+.+|++++++++ +. +.++++++++++
T Consensus 55 ~~~~i~l~~~~~~-~~~~~~v~~a~~~~~~~~~~~~~~~--~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~a 131 (432)
T 3ei9_A 55 DAQVISLGIGDTT-EPIPEVITSAMAKKAHELSTIEGYS--GYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCD 131 (432)
T ss_dssp TCCCEECSSCCCC-SCCCHHHHHHHHHHHHHTTSTTTCC--CCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHH
T ss_pred CCCeEEccCCCCC-CCCCHHHHHHHHHHHhcccccCCcc--CCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHH
Confidence 4789999999988 88999999976543 2222111 1122233467888888885 43 345555555555
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC---------cEEEEeeCCCHHHHHHHHhc
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM---------VEVFVYKHCDMSHLKTLLSC 248 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g---------~~v~~~~~~D~~~Le~~l~~ 248 (334)
+. ++.+++++ ||.|+++.+.|.++...++..... + .+++.+++++...+...+++
T Consensus 132 l~-~l~~l~~~--------------gd~Vl~~~p~y~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 195 (432)
T 3ei9_A 132 IS-RLQVMFGS--------------NVTIAVQDPSYPAYVDSSVIMGQT-GQFNTDVQKYGNIEYMRCTPENGFFPDLST 195 (432)
T ss_dssp HH-HHHHHHCT--------------TCCEEEEESCCTHHHHHHHHHTCS-CCEETTTTEETTCEEEECCGGGTTSCCGGG
T ss_pred HH-HHHHHcCC--------------CCEEEEeCCCCHHHHHHHHHcCCc-ccccccccccCceEEeccCcccCCcCChhh
Confidence 55 46666654 788999999999999888877311 1 24566665432222111222
Q ss_pred CCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc
Q 019931 249 CTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 249 ~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G 325 (334)
. +++++|++++++||+|.+.+ +++|+++|++||++||+||+|+.++++..+.++....+ .++.+|+++||||+||
T Consensus 196 ~-~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~g 273 (432)
T 3ei9_A 196 V-GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPG-AEEVAMETASFSNYAG 273 (432)
T ss_dssp C-CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTT-GGGTEEEEEESHHHHC
T ss_pred C-CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCC-CCCeEEEEecchhccC
Confidence 2 36788888899999998876 66778889999999999999998777654444433222 2345799999999999
Q ss_pred CCc---cEEeeC
Q 019931 326 CQG---GFIACR 334 (334)
Q Consensus 326 ~~G---G~i~~~ 334 (334)
+.| ||++++
T Consensus 274 ~~G~r~G~~~~~ 285 (432)
T 3ei9_A 274 FTGVRLGWTVIP 285 (432)
T ss_dssp TTTTCCEEEECC
T ss_pred CcccceEEEEEC
Confidence 878 998764
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=187.53 Aligned_cols=203 Identities=11% Similarity=-0.026 Sum_probs=149.2
Q ss_pred ccceeEEEeecCccCCCCCCHHHHHHHHHhcC-CC-CccccccCchHHHHHHHHHHHhHhC--------CCcEEEeccHH
Q 019931 106 RQFKRLLLFSGNDYLGLSSHPTIAKAAARHGM-GP-RGSALICGYTNYHRLLESCLADLKK--------KEDCLLCPTGF 175 (334)
Q Consensus 106 ~~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~-g~-~~sr~~~G~~~~~~~LE~~La~~~g--------~e~alv~~sG~ 175 (334)
.+|+++|||+++++ .+..+|.+++++.+.-. +. .++....|. .+++++++++++ .+.++++++|+
T Consensus 41 ~~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~----~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t 115 (437)
T 3g0t_A 41 ATGTKFCRMEMGVP-GLPAPQIGIETEIQKLREGVASIYPNLDGL----PELKQEASRFAKLFVNIDIPARACVPTVGSM 115 (437)
T ss_dssp HHTCCCEECCCCSC-CSCCCHHHHHHHHHHHHHTGGGSCCCTTCC----HHHHHHHHHHHHHHHCCCCCGGGEEEESHHH
T ss_pred hcCCCEEeccCcCC-CCCCCHHHHHHHHHHHhCCcCcCCCCCCCh----HHHHHHHHHHHHHhhCCCCCcccEEEeCCHH
Confidence 34588999999985 67789999998765422 22 222222333 556666666665 45788889999
Q ss_pred HHHHHHHHHHh--hhhhhccCCCccCCCCCe--EEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHH
Q 019931 176 AANMAVIVAVG--NIASLLAGDEKSFKDEKI--AIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTL 245 (334)
Q Consensus 176 ~An~~ai~al~--~~~~~~~~~~~~~~~~gd--~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~ 245 (334)
+|+..++.+++ ++ || .|++..+.|.++...++.. |++++.++.+ |+++|+++
T Consensus 116 ~al~~~~~~l~~~~~--------------gd~~~Vl~~~p~~~~~~~~~~~~----g~~~~~v~~~~~~~~~d~~~l~~~ 177 (437)
T 3g0t_A 116 QGCFVSFLVANRTHK--------------NREYGTLFIDPGFNLNKLQCRIL----GQKFESFDLFEYRGEKLREKLESY 177 (437)
T ss_dssp HHHHHHHHHHTTSCT--------------TCSCCEEEEESCCHHHHHHHHHH----TCCCEEEEGGGGCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC--------------CCccEEEEeCCCcHhHHHHHHHc----CCEEEEEeecCCCCccCHHHHHHH
Confidence 99999999887 54 67 7777788888888887766 7788888763 78899998
Q ss_pred HhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCccc-----c-cccCCCCCccEE
Q 019931 246 LSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-----A-EQFNCERDVDIC 316 (334)
Q Consensus 246 l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-----~-~~~~~~~~~Div 316 (334)
++. +++++|++.+++||+|.+.| +++|+++|++||++||+||+|+.+.++. ...+ . ..+.-..+.+|+
T Consensus 178 l~~--~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~ 254 (437)
T 3g0t_A 178 LQT--GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRK-DYSHPGEPLYQPSVANYTDNYIL 254 (437)
T ss_dssp HTT--TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTS-CCCSTTSSCCCCCGGGTCSCEEE
T ss_pred Hhc--CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCC-CcCcccccchhhccCCCCCcEEE
Confidence 843 36788888889999999887 7778999999999999999999766651 1111 0 111112455799
Q ss_pred EecCcccccCCc---cEEeeC
Q 019931 317 VGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 317 ~~SlsKa~G~~G---G~i~~~ 334 (334)
++||||.+|..| ||++++
T Consensus 255 ~~s~sK~~~~~G~r~G~~~~~ 275 (437)
T 3g0t_A 255 ALSSSKAFSYAGQRIGVLMIS 275 (437)
T ss_dssp EEESTTTTSCGGGCCEEEEEC
T ss_pred EEcCccCCCCccceeEEEEEC
Confidence 999999998666 888764
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=188.14 Aligned_cols=161 Identities=17% Similarity=0.134 Sum_probs=134.2
Q ss_pred chHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC
Q 019931 148 YTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK 227 (334)
Q Consensus 148 ~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~ 227 (334)
..+..+++|+++++++|.+++++++||++|+..++.+++++ +|.|++....|.++...++......
T Consensus 63 ~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~~--------------gd~vl~~~~~~~~~~~~~~~~~~~~ 128 (398)
T 1gc0_A 63 SNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRP--------------GDEVLLGNTLYGCTFAFLHHGIGEF 128 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCT--------------TCEEEEESSCCSHHHHHHHHTGGGG
T ss_pred CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhcC--------------CCEEEEeCCCchhHHHHHHHHHHHc
Confidence 45788999999999999999999999999999999988654 7788888888888776663221123
Q ss_pred CcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCccccccc
Q 019931 228 MVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 228 g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
+.+++.++..|+++|++.+++ ++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+.++. .
T Consensus 129 g~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~---~----- 197 (398)
T 1gc0_A 129 GVKLRHVDMADLQALEAAMTP---ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQR---P----- 197 (398)
T ss_dssp TCEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCC---G-----
T ss_pred CCEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCC---c-----
Confidence 788999998999999999864 78999999999999999999999999999999999999999876532 1
Q ss_pred CCCCCccEEEecCcccccCC----ccEEeeC
Q 019931 308 NCERDVDICVGTLSKAAGCQ----GGFIACR 334 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~~----GG~i~~~ 334 (334)
+..++|+++.|++|.||+. ||+++++
T Consensus 198 -~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~ 227 (398)
T 1gc0_A 198 -LELGADLVVHSATKYLSGHGDITAGIVVGS 227 (398)
T ss_dssp -GGGTCSEEEEETTTTTTCSSSCCCEEEEEC
T ss_pred -hhhCceEEEECCccccCCCCCCeEEEEEEC
Confidence 1224689999999999863 6888764
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-20 Score=187.03 Aligned_cols=160 Identities=19% Similarity=0.147 Sum_probs=133.7
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||++|++++|.+.+++|+||++|+..++.+++++ ||.|++....|.++...+.......|
T Consensus 113 ~~~~~~l~~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~~--------------Gd~Vi~~~~~y~~~~~~~~~~~~~~G 178 (445)
T 1qgn_A 113 NPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPA--------------GGHIVTTTDCYRKTRIFIETILPKMG 178 (445)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCS--------------SCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCC--------------CCEEEEcCCCchhHHHHHHHHHHHcC
Confidence 5778999999999999999999999999999999988764 77788777888877665442212238
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCc-EEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCccccccc
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRK-KVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~-~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
.+++.++.+|+++|++++++ ++ ++|++++++|++|.+.|+++|.++|++||++||+|++|+.+....
T Consensus 179 ~~v~~v~~~d~~~l~~ai~~---~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~--------- 246 (445)
T 1qgn_A 179 ITATVIDPADVGALELALNQ---KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQK--------- 246 (445)
T ss_dssp CEEEEECSSCHHHHHHHHHH---SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC---------
T ss_pred CEEEEeCCCCHHHHHHHhcc---CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC---------
Confidence 89999999999999999986 67 999999999999999999999999999999999999998764321
Q ss_pred CCCCCccEEEecCcccccCC----ccEEeeC
Q 019931 308 NCERDVDICVGTLSKAAGCQ----GGFIACR 334 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~~----GG~i~~~ 334 (334)
....++||++.|++|.+|+. +|+++++
T Consensus 247 ~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~ 277 (445)
T 1qgn_A 247 ALALGADLVLHSATKFLGGHNDVLAGCISGP 277 (445)
T ss_dssp TTTTTCSEEEECTTTTTTCSSSCCCEEEEEC
T ss_pred ccccCCEEEEECCcccccccccceEEEEEEC
Confidence 12235789999999999874 6888764
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=190.40 Aligned_cols=160 Identities=18% Similarity=0.128 Sum_probs=132.6
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+.+++||++||+++|.+.+++|+||++|+..++.+++++ ||.|++....|.+....+.......|
T Consensus 81 ~p~~~~le~~lA~l~g~~~~i~~ssGt~Ai~~al~~l~~~--------------Gd~Vi~~~~~y~~~~~~~~~~l~~~G 146 (415)
T 2fq6_A 81 TLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQ--------------GDHVLMTNTAYEPSQDFCSKILSKLG 146 (415)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCCT--------------TCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred CchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhCC--------------CCEEEEeCCCchHHHHHHHHHHHHcC
Confidence 5788999999999999999999999999999999887764 78888777888776665532112238
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHH--cCCEEEEecCcccccccCCCcccccc
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRK--YGFLLVLDDAHGTFVCGKNGGGVAEQ 306 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k--~ga~LivDeAh~~Gv~G~~G~g~~~~ 306 (334)
+++..++.+|+++|++++++ ++++|++++++||+|.+.|+++|.++|++ +|++||+|++|+.++... .
T Consensus 147 ~~v~~v~~~d~~~le~ai~~---~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~---p---- 216 (415)
T 2fq6_A 147 VTTSWFDPLIGADIVKHLQP---NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFK---A---- 216 (415)
T ss_dssp CEEEEECTTCGGGGGGGCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSC---G----
T ss_pred cEEEEECCCCHHHHHHhhcc---CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCC---c----
Confidence 89999999999999998864 78999999999999999999999999999 999999999999764321 1
Q ss_pred cCCCCCccEEEecCcccccCC----ccEEeeC
Q 019931 307 FNCERDVDICVGTLSKAAGCQ----GGFIACR 334 (334)
Q Consensus 307 ~~~~~~~Div~~SlsKa~G~~----GG~i~~~ 334 (334)
+..++||++.|++|++|+. ||+++++
T Consensus 217 --~~~g~Div~~S~sK~lg~~g~~~~G~l~~~ 246 (415)
T 2fq6_A 217 --LDFGIDVSIQAATKYLVGHSDAMIGTAVCN 246 (415)
T ss_dssp --GGGTCSEEEEETTTTTTCSSSCCCEEEEEC
T ss_pred --cccCCeEEEEeCccccCCCCCceEEEEEeC
Confidence 1235799999999999874 5888763
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-21 Score=190.64 Aligned_cols=158 Identities=17% Similarity=0.100 Sum_probs=132.9
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||++|++++|.+.+++++||++|+..++.+++++ ||.|++....|.+....+.......|
T Consensus 81 ~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al~~~--------------Gd~Vi~~~~~y~~~~~~~~~~~~~~G 146 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLARA--------------GDSVVTTDRLFGHTLSLFQKTLPSFG 146 (430)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCT--------------TCEEEEETTCCHHHHHHHHTHHHHTT
T ss_pred CHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhCC--------------CCEEEEcCCCchhHHHHHHHHHHHcC
Confidence 5788999999999999999999999999999999988765 78888888888877664431111228
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
.+++.++.+|+++|++++++ ++++|++++++||+|.+.|+++|+++|+++|++||+|++|+.+.+-. .
T Consensus 147 ~~~~~v~~~d~~~l~~ai~~---~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~~~---------~ 214 (430)
T 3ri6_A 147 IEVRFVDVMDSLAVEHACDE---TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLE---------A 214 (430)
T ss_dssp CEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTCC---------G
T ss_pred CEEEEeCCCCHHHHHHhhCC---CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCC---------h
Confidence 89999999999999999864 78999999999999999999999999999999999999999765411 1
Q ss_pred CCCCccEEEecCcccccC----CccEEe
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIA 332 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~ 332 (334)
...++|+++.|++|++|+ .||+|+
T Consensus 215 ~~~g~div~~S~sK~l~g~g~~~gG~vv 242 (430)
T 3ri6_A 215 KRLGVDIEVLSSTKFISGGGTSVGGVLI 242 (430)
T ss_dssp GGGTCSEEEEECCCEEETTEEECCEEEE
T ss_pred HHcCCEEEEECCcccccCCCCceEEEEE
Confidence 123468999999999985 678887
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=185.02 Aligned_cols=208 Identities=13% Similarity=0.016 Sum_probs=150.5
Q ss_pred ccceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC----CcEEEeccHHHHHHHH
Q 019931 106 RQFKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK----EDCLLCPTGFAANMAV 181 (334)
Q Consensus 106 ~~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~----e~alv~~sG~~An~~a 181 (334)
.+| ++|||++++ ..+..+|.+++++.+...+...+....|..++.+++.+.+.+.+|. +.++++++|++|+..+
T Consensus 21 ~~g-~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~ 98 (376)
T 3ezs_A 21 PKK-RGLDLGIGE-PQFETPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNF 98 (376)
T ss_dssp CSS-CCCBCSSCC-CCSCCCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHH
T ss_pred ccC-CEEEeCCCC-CCCCCCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHH
Confidence 345 789999987 5677789999998775433233333445556666666666665564 5688889999999999
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHH----HHHHHHhcCCCCcEEEE
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMS----HLKTLLSCCTMRKKVVV 257 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~----~Le~~l~~~~~~~~lVv 257 (334)
+.++.++ ..||.|++..+.|.+....++.. +.+++.++.++.+ +|++.+.+ ++++|+
T Consensus 99 ~~~~~~~------------~~gd~vl~~~p~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~l~~~~~~---~~~~v~ 159 (376)
T 3ezs_A 99 PSFVLFD------------YQNPTIAYPNPFYQIYEGAAKFI----KAKSLLMPLTKENDFTPSLNEKELQ---EVDLVI 159 (376)
T ss_dssp HHHHTTT------------CSSCEEEEEESCCTHHHHHHHHT----TCEEEEEECCGGGTSCCCCCHHHHH---HCSEEE
T ss_pred HHHHcCC------------CCCCEEEEecCCcHhHHHHHHHc----CCEEEEcccCCCCCcchhHHhhhcc---CCCEEE
Confidence 9988653 01678888888888888877766 8888888865332 56777764 578888
Q ss_pred EcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC---C-CCCccEEEecCcccccCCc--
Q 019931 258 TDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN---C-ERDVDICVGTLSKAAGCQG-- 328 (334)
Q Consensus 258 ~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~---~-~~~~Div~~SlsKa~G~~G-- 328 (334)
+++++||+|.+.| +++|+++|++||++||+||+|+...++.....+....+ . ..+.++++.||||+||+.|
T Consensus 160 ~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r 239 (376)
T 3ezs_A 160 LNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLR 239 (376)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGC
T ss_pred EcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccce
Confidence 8899999999988 66788889999999999999997655432222221110 0 2456799999999998766
Q ss_pred -cEEeeC
Q 019931 329 -GFIACR 334 (334)
Q Consensus 329 -G~i~~~ 334 (334)
||++++
T Consensus 240 ~G~~~~~ 246 (376)
T 3ezs_A 240 SGFIAGD 246 (376)
T ss_dssp CEEEEEC
T ss_pred eEEEeeC
Confidence 888764
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-21 Score=184.83 Aligned_cols=196 Identities=12% Similarity=0.048 Sum_probs=145.7
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhH----hC----CCcEEEeccHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADL----KK----KEDCLLCPTGFAANM 179 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~----~g----~e~alv~~sG~~An~ 179 (334)
++++||++++ +++..+|.+++++.+.- .+...+ ..+ ..+++++++++ +| .+.++++++|++|+.
T Consensus 31 ~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~~y--~~~----~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~ 103 (399)
T 1c7n_A 31 NEVVPLSVAD-MEFKNPPELIEGLKKYLDETVLGY--TGP----TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVF 103 (399)
T ss_dssp TTCCCCCSSS-CSSCCCHHHHHHHHHHHHHCCCSS--BCC----CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred CCceeeeecC-CCCCCCHHHHHHHHHHHhcCCCCC--CCC----cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHH
Confidence 3789998886 77878999999876542 111111 111 35566666665 45 356888899999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC--------CCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH--------CDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~--------~D~~~Le~~l~~~~~ 251 (334)
.++.++..+ ||.|++..+.|.+....++.. |.+++.++. .|+++|++++++ +
T Consensus 104 ~~~~~l~~~--------------gd~vl~~~p~~~~~~~~~~~~----g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--~ 163 (399)
T 1c7n_A 104 NAVREFTKP--------------GDGVIIITPVYYPFFMAIKNQ----ERKIIECELLEKDGYYTIDFQKLEKLSKD--K 163 (399)
T ss_dssp HHHHHHCCT--------------TCEEEECSSCCTHHHHHHHTT----TCEEEECCCEEETTEEECCHHHHHHHHTC--T
T ss_pred HHHHHhcCC--------------CCEEEEcCCCcHhHHHHHHHc----CCEEEecccccCCCCEEEcHHHHHHHhcc--C
Confidence 999988754 788888888888888777665 788877764 478999999873 3
Q ss_pred CcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC---CCccEEEecCccccc
Q 019931 252 RKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE---RDVDICVGTLSKAAG 325 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~---~~~Div~~SlsKa~G 325 (334)
++++|++++++||+|.+.| +++|+++|++||++||+||+|+.+.++ |........+. .+.+|++.||||+||
T Consensus 164 ~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 241 (399)
T 1c7n_A 164 NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMP--GYEHTVFQSIDEQLADKTITFTAPSKTFN 241 (399)
T ss_dssp TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCT--TCCCCCGGGSCHHHHTTEEEEECSHHHHT
T ss_pred CCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC--CCCcccHHHcCccccCcEEEEEeChhhcc
Confidence 6888888999999999988 999999999999999999999976543 32221122221 234689999999998
Q ss_pred CCc---cEEee
Q 019931 326 CQG---GFIAC 333 (334)
Q Consensus 326 ~~G---G~i~~ 333 (334)
+.| ||+++
T Consensus 242 ~~G~r~G~~~~ 252 (399)
T 1c7n_A 242 IAGMGMSNIII 252 (399)
T ss_dssp CGGGCCEEEEC
T ss_pred ccchheEEEEE
Confidence 655 88876
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.6e-22 Score=194.88 Aligned_cols=217 Identities=13% Similarity=0.093 Sum_probs=147.6
Q ss_pred hc-ccceeEEEeecCc---cCCCCCCHHHH-H-HHHH---h-cCCCCccccccCchHHHHHHHHHHHhHhC---CCcEEE
Q 019931 104 FA-RQFKRLLLFSGND---YLGLSSHPTIA-K-AAAR---H-GMGPRGSALICGYTNYHRLLESCLADLKK---KEDCLL 170 (334)
Q Consensus 104 ~~-~~g~~~l~f~sn~---yLgl~~~p~v~-~-a~~~---~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g---~e~alv 170 (334)
++ .+|++||||+++. .||+ .||+|+ + |+.+ . ..+...+. .+..+...+++++|+++++ .+++++
T Consensus 48 ~d~~~g~~ylD~~~~~~~~~lG~-~~p~v~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~la~~la~~~~~~~~~~v~~ 124 (449)
T 2cjg_A 48 VDAITGRRYLDMFTFVASSALGM-NPPALVDDREFHAELMQAALNKPSNS--DVYSVAMARFVETFARVLGDPALPHLFF 124 (449)
T ss_dssp EBTTTCCEEEESSHHHHTCSSCB-SCHHHHTCHHHHHHHHHHHTCCCCTT--TCCCHHHHHHHHHHHHHHCCTTCCEEEE
T ss_pred EECCCCcEEEEccCCccccCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCc--ccCCHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 45 6789999998864 4666 499999 8 7765 3 23321111 2346778999999999984 567889
Q ss_pred eccHHHHHHHHHHHHhhhhhhccC---CCccCCCCCeEEEEcCCCchhhHHHHHHhhh---------cCCcEEEEeeCCC
Q 019931 171 CPTGFAANMAVIVAVGNIASLLAG---DEKSFKDEKIAIFSDALNHASIIDGIRIAER---------TKMVEVFVYKHCD 238 (334)
Q Consensus 171 ~~sG~~An~~ai~al~~~~~~~~~---~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~---------~~g~~v~~~~~~D 238 (334)
++||++||..+++++..-.. .+ ...+..+++.+|+.+..+|+.....+.+... .....++.++++|
T Consensus 125 ~~~gseA~~~aik~a~~~~~--~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 202 (449)
T 2cjg_A 125 VEGGALAVENALKAAFDWKS--RHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMR 202 (449)
T ss_dssp ESSHHHHHHHHHHHHHHHHH--HHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCC
T ss_pred eCchHHHHHHHHHHHHHHhc--ccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCC
Confidence 99999999999986531000 00 0000001246677777888765543332210 0012566677777
Q ss_pred --HHH-------------HHHHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCC
Q 019931 239 --MSH-------------LKTLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKN 299 (334)
Q Consensus 239 --~~~-------------Le~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~ 299 (334)
.+. |++++++..+++++|++++++|++|.+.| +++|+++|++||++||+||+|+ | +|++
T Consensus 203 ~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g-~g~~ 280 (449)
T 2cjg_A 203 PGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT-G-CGLT 280 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTT-T-TTTT
T ss_pred chhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEecccc-C-CCcc
Confidence 443 88888643347899999999999998777 9999999999999999999999 4 6676
Q ss_pred Cccc-ccccCCCCCccEEEecCcccccCCccEEe
Q 019931 300 GGGV-AEQFNCERDVDICVGTLSKAAGCQGGFIA 332 (334)
Q Consensus 300 G~g~-~~~~~~~~~~Div~~SlsKa~G~~GG~i~ 332 (334)
|..+ .+++++.+ |++ ||||+| ..|++++
T Consensus 281 g~~~~~~~~~~~~--di~--t~sK~l-~iG~~~~ 309 (449)
T 2cjg_A 281 GTAWAYQQLDVAP--DIV--AFGKKT-QVCGVMA 309 (449)
T ss_dssp SSSSTHHHHTCCC--SEE--EECGGG-SSEEEEE
T ss_pred CcceeecccCCCc--eEE--EecCcc-cEEEEEE
Confidence 6644 35666655 554 899999 6665543
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-20 Score=180.19 Aligned_cols=195 Identities=17% Similarity=0.150 Sum_probs=142.4
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC-CCCccccccCchHHHHH-HHHHHHhHh----C----CCcEEEeccHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM-GPRGSALICGYTNYHRL-LESCLADLK----K----KEDCLLCPTGFAAN 178 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~-g~~~sr~~~G~~~~~~~-LE~~La~~~----g----~e~alv~~sG~~An 178 (334)
++++||+++++ ++..+|.|++++.+.-. +...+. .+ ..+ +++++++++ | .+.++++++|++|+
T Consensus 28 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y~--~~----~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al 100 (390)
T 1d2f_A 28 ADLLPFTISDM-DFATAPCIIEALNQRLMHGVFGYS--RW----KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMV 100 (390)
T ss_dssp --CEECCSSSC-SSCCCHHHHHHHHHHHTTCCCCCC--CS----CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHH
T ss_pred CCeeEeeecCC-CCCCCHHHHHHHHHHHhCCCCCCC--CC----ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHH
Confidence 37899988874 67789999998866432 221111 11 344 666666654 5 35688889999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC--------CCHHHHHHHHhcCC
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH--------CDMSHLKTLLSCCT 250 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~--------~D~~~Le~~l~~~~ 250 (334)
..++.++..+ ||.|++..+.|.+....++.. +.+++.++. .|+++|++++++
T Consensus 101 ~~~~~~l~~~--------------gd~vl~~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-- 160 (390)
T 1d2f_A 101 SELIRQWSET--------------GEGVVIHTPAYDAFYKAIEGN----QRTVMPVALEKQADGWFCDMGKLEAVLAK-- 160 (390)
T ss_dssp HHHHHHSSCT--------------TCEEEEEESCCHHHHHHHHHT----TCEEEEEECEECSSSEECCHHHHHHHHTS--
T ss_pred HHHHHHhcCC--------------CCEEEEcCCCcHHHHHHHHHC----CCEEEEeecccCCCccccCHHHHHHHhcc--
Confidence 9999987654 788888888888888777766 788877764 489999999864
Q ss_pred CCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCc-cEEEecCcccccC
Q 019931 251 MRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDV-DICVGTLSKAAGC 326 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~-Div~~SlsKa~G~ 326 (334)
.++++|++.+++||+|.+.| +++|+++|++||++||+||+|+.+.++ |........+.++. |+ +.||||+||.
T Consensus 161 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~d~-~~s~sK~~~~ 237 (390)
T 1d2f_A 161 PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWG--EQPHIPWSNVARGDWAL-LTSGSKSFNI 237 (390)
T ss_dssp TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCS--SSCCCCGGGTCCSSEEE-EECSHHHHTC
T ss_pred CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC--CCCCcCHHHcchhhHhh-ccCccHhhcc
Confidence 25788888899999999887 889999999999999999999976543 33332222333333 67 9999999986
Q ss_pred Cc---cEEee
Q 019931 327 QG---GFIAC 333 (334)
Q Consensus 327 ~G---G~i~~ 333 (334)
.| ||+++
T Consensus 238 ~G~r~G~~~~ 247 (390)
T 1d2f_A 238 PALTGAYGII 247 (390)
T ss_dssp GGGCCEEEEE
T ss_pred cChhheEEEE
Confidence 65 88875
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=190.38 Aligned_cols=183 Identities=15% Similarity=0.166 Sum_probs=140.3
Q ss_pred CHHHHHHHHHhcCCC----CccccccCchHHHHHHHHHHHhHhCCCcEEE---eccHHHHHHHHHHHHhhhhhhccCCCc
Q 019931 125 HPTIAKAAARHGMGP----RGSALICGYTNYHRLLESCLADLKKKEDCLL---CPTGFAANMAVIVAVGNIASLLAGDEK 197 (334)
Q Consensus 125 ~p~v~~a~~~~g~g~----~~sr~~~G~~~~~~~LE~~La~~~g~e~alv---~~sG~~An~~ai~al~~~~~~~~~~~~ 197 (334)
+++|.+++.++..+. ..+...++ ...+++||+++|+++|.+.+++ |+||++||..++.+++++
T Consensus 31 ~~~vl~a~~~~~~~~~~~~~~~~~~y~-~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~--------- 100 (409)
T 3jzl_A 31 QAKVLDAFQENKVSDFHFHPSTGYGYD-DEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRP--------- 100 (409)
T ss_dssp HHHHHHHHHHTTCCGGGGCCCCTTCTT-CHHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCT---------
T ss_pred HHHHHHHHHHhhhhhhccCCCcCCCCC-hhHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCC---------
Confidence 467778777653321 11112222 2347899999999999999998 899999999999998765
Q ss_pred cCCCCCeEEEEcC-CCchhhHHHHH-------HhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcC----
Q 019931 198 SFKDEKIAIFSDA-LNHASIIDGIR-------IAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDS---- 260 (334)
Q Consensus 198 ~~~~~gd~Vl~d~-~~H~s~~~g~~-------ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~---- 260 (334)
||.|+++. ..|..+...+. .. ...|++++.++. .|+++|++++++ ++++|++++
T Consensus 101 -----GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l-~~~G~~~~~v~~~~~g~~d~e~l~~ai~~---~tklV~i~~s~g~ 171 (409)
T 3jzl_A 101 -----DDELLYITGQPYDTLEEIVGIRKQGQGSL-KDFHIGYSSVPLLENGDVDFPRIAKKMTP---KTKMIGIQRSRGY 171 (409)
T ss_dssp -----TCEEEECSSSCCTTHHHHHTSSSSSSSCT-GGGTCEEEECCCCTTSCCCHHHHHHHCCT---TEEEEEEECSCTT
T ss_pred -----CCEEEEeCCCCcHhHHHHHhcccchhhHH-HHcCCEEEEeCCCCCCCcCHHHHHHhccC---CCeEEEEECCCCC
Confidence 78888886 66766654331 11 122788888887 699999998864 789999999
Q ss_pred CCCCCCCccCHHHHHHHHHH--cCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC----CccEEeeC
Q 019931 261 LFSMDGDFAPMVELVKLRRK--YGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC----QGGFIACR 334 (334)
Q Consensus 261 v~n~~G~~~pL~~L~ela~k--~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~----~GG~i~~~ 334 (334)
++||+|.+.|+++|+++|++ +|+++++|++|+.++++.. ....++||+++|+||++|+ .||||+++
T Consensus 172 p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~--------p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~ 243 (409)
T 3jzl_A 172 ADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQE--------PPEVGADIIAGSLIKNPGGGLAKTGGYIAGK 243 (409)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCC--------SGGGTCSEEEEETTSGGGTTTCSSCEEEEEC
T ss_pred CCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCC--------ccccCCeEEEECccccCCccCCceEEEEEeC
Confidence 99999999999999999999 9999999999997764321 1223579999999999975 47999875
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=180.77 Aligned_cols=199 Identities=14% Similarity=0.125 Sum_probs=145.8
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHh----C----CCc-EEEeccHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLK----K----KED-CLLCPTGFAAN 178 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~----g----~e~-alv~~sG~~An 178 (334)
++++||++++ ..+..+|.+++++.+.- .+...+....|. .++++++++++ | .++ ++++++|++|+
T Consensus 26 ~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~----~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~ 100 (389)
T 1gd9_A 26 KDVISLGIGE-PDFDTPQHIKEYAKEALDKGLTHYGPNIGL----LELREAIAEKLKKQNGIEADPKTEIMVLLGANQAF 100 (389)
T ss_dssp SSCEECCCCS-CSSCCCHHHHHHHHHHHHTTCCSCCCTTCC----HHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHH
T ss_pred cCeEecCCCC-CCCCCCHHHHHHHHHHHhCCCCCCCCCCCc----HHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHH
Confidence 4688998886 35667899999776532 222222222233 45555556555 6 357 88899999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCC
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTM 251 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~ 251 (334)
..++.+++.+ ||.|++..+.|.++...++.. |.+++.++.. |+++|++++++
T Consensus 101 ~~~~~~~~~~--------------gd~vl~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~l~~--- 159 (389)
T 1gd9_A 101 LMGLSAFLKD--------------GEEVLIPTPAFVSYAPAVILA----GGKPVEVPTYEEDEFRLNVDELKKYVTD--- 159 (389)
T ss_dssp HHHHTTTCCT--------------TCEEEEEESCCTTHHHHHHHH----TCEEEEEECCGGGTTCCCHHHHHHHCCT---
T ss_pred HHHHHHhCCC--------------CCEEEEcCCCchhHHHHHHHC----CCEEEEeccCCccCCCCCHHHHHHhcCc---
Confidence 9999887653 788888888888888887766 7888877632 78889888864
Q ss_pred CcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCC-CcccccccCCCCCccEEEecCcccccCC
Q 019931 252 RKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKN-GGGVAEQFNCERDVDICVGTLSKAAGCQ 327 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~-G~g~~~~~~~~~~~Div~~SlsKa~G~~ 327 (334)
++++|++++++||+|.+.| +++|+++|++||++||+||+|+.+.++.. ...+....+ ..+.|++++||||+||..
T Consensus 160 ~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~ 238 (389)
T 1gd9_A 160 KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDG-MFERTITVNGFSKTFAMT 238 (389)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT-CGGGEEEEEESTTTTTCG
T ss_pred CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccC-CCCCEEEEecChhhcCCc
Confidence 6788888999999999875 89999999999999999999998765321 122222111 134689999999999876
Q ss_pred c---cEEeeC
Q 019931 328 G---GFIACR 334 (334)
Q Consensus 328 G---G~i~~~ 334 (334)
| ||++++
T Consensus 239 G~r~G~~~~~ 248 (389)
T 1gd9_A 239 GWRLGFVAAP 248 (389)
T ss_dssp GGCCEEEECC
T ss_pred ccceEEEEEC
Confidence 6 888764
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-21 Score=182.41 Aligned_cols=196 Identities=16% Similarity=0.125 Sum_probs=147.4
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhcC----CCCccccccCc--hHHHHHHHHHHHhHhCC---CcEEEeccHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHGM----GPRGSALICGY--TNYHRLLESCLADLKKK---EDCLLCPTGFAAN 178 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~----g~~~sr~~~G~--~~~~~~LE~~La~~~g~---e~alv~~sG~~An 178 (334)
|+++++|.++++ + ..+|.+++++.++-. ........++. .+...+++++|+++++. +.++++++|++|+
T Consensus 26 g~~~i~l~~~~~-~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~ 103 (420)
T 1t3i_A 26 GHPLVYLDNAAT-S-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAI 103 (420)
T ss_dssp TEECEECBTTTC-C-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred CCceEEecCCcc-C-CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHH
Confidence 477899999886 4 568999997755321 11101122332 35678999999999998 6789999999999
Q ss_pred HHHHHHH----hhhhhhccCCCccCCCCCeEEEEcCCCchhhH----HHHHHhhhcCCcEEEEeeC-----CCHHHHHHH
Q 019931 179 MAVIVAV----GNIASLLAGDEKSFKDEKIAIFSDALNHASII----DGIRIAERTKMVEVFVYKH-----CDMSHLKTL 245 (334)
Q Consensus 179 ~~ai~al----~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~----~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~ 245 (334)
..++.++ .+ +||.|++....|.+.. ..++.. |.+++.++. .|+++|+++
T Consensus 104 ~~~~~~~~~~~~~--------------~gd~Vl~~~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~ 165 (420)
T 1t3i_A 104 NLVAYSWGMNNLK--------------AGDEIITTVMEHHSNLVPWQMVAAKT----GAVLKFVQLDEQESFDLEHFKTL 165 (420)
T ss_dssp HHHHHHTHHHHCC--------------TTCEEEEETTCCGGGTHHHHHHHHHH----CCEEEEECBCTTSSBCHHHHHHH
T ss_pred HHHHHHhhhcccC--------------CCCEEEECcchhHHHHHHHHHHHHhc----CcEEEEeccCCCCCcCHHHHHHh
Confidence 9999987 43 3777888888777743 233333 788888875 488999988
Q ss_pred HhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc
Q 019931 246 LSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 246 l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G 325 (334)
+++ ++++|++++++|++|.+.|+++|.++|++||++||+|++|+.|.... .. ..+ ++|+++.|+||.+|
T Consensus 166 l~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~---~~-~~~----~~di~~~s~sK~~~ 234 (420)
T 1t3i_A 166 LSE---KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPL---DV-QLI----DCDWLVASGHKMCA 234 (420)
T ss_dssp CCT---TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCC---CH-HHH----TCSEEEEEGGGTTS
T ss_pred hCC---CceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccC---ch-hhc----CCCEEEEehhhhcC
Confidence 864 78999999999999999999999999999999999999999764311 11 111 36899999999888
Q ss_pred CCc-cEEeeC
Q 019931 326 CQG-GFIACR 334 (334)
Q Consensus 326 ~~G-G~i~~~ 334 (334)
+.| |+++++
T Consensus 235 ~~g~G~~~~~ 244 (420)
T 1t3i_A 235 PTGIGFLYGK 244 (420)
T ss_dssp CTTCEEEEEC
T ss_pred CCceEEEEEc
Confidence 766 887764
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.5e-21 Score=183.75 Aligned_cols=198 Identities=13% Similarity=0.124 Sum_probs=146.1
Q ss_pred cceeEEEeecCccC--CCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHh----C----CCcEEEeccHH
Q 019931 107 QFKRLLLFSGNDYL--GLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLK----K----KEDCLLCPTGF 175 (334)
Q Consensus 107 ~g~~~l~f~sn~yL--gl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~----g----~e~alv~~sG~ 175 (334)
+|++++||.++++. .+..+|.+++++.+.- .+...+....|. .++++++++++ | .+.++++++|+
T Consensus 36 ~g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~----~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~ 111 (406)
T 1xi9_A 36 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGL----PELRKAIVEREKRKNGVDITPDDVRVTAAVT 111 (406)
T ss_dssp TTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCC----HHHHHHHHHHHHHHHCCCCCGGGEEEESHHH
T ss_pred cCCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCCCCCCCCCc----HHHHHHHHHHHHHhcCCCCCHHHEEEcCChH
Confidence 45889999998764 6677899999775532 222112222233 45666666655 3 25788889999
Q ss_pred HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhc
Q 019931 176 AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSC 248 (334)
Q Consensus 176 ~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~ 248 (334)
+|+..++.+++++ ||.|++..+.|.++...++.. |.+++.++.+ |+++|++++++
T Consensus 112 ~al~~~~~~l~~~--------------gd~Vl~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 173 (406)
T 1xi9_A 112 EALQLIFGALLDP--------------GDEILVPGPSYPPYTGLVKFY----GGKPVEYRTIEEEDWQPDIDDIRKKITD 173 (406)
T ss_dssp HHHHHHHHHHCCT--------------TCEEEEEESCCHHHHHHHHHT----TCEEEEEEEEGGGTSEECHHHHHHHCCT
T ss_pred HHHHHHHHHhCCC--------------CCEEEEcCCCCccHHHHHHHc----CCEEEEeecCCCcCCcCCHHHHHHhhCc
Confidence 9999999988654 788888888888888777766 7887777642 78899988864
Q ss_pred CCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCc-cEEEecCcccc
Q 019931 249 CTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDV-DICVGTLSKAA 324 (334)
Q Consensus 249 ~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~-Div~~SlsKa~ 324 (334)
++++|++++++||+|.+.| +++|+++|++||++||+||+|+.+.++.... ....++ ++. ||+++||||++
T Consensus 174 ---~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~-~~~~~~--~~~~~i~~~s~sK~~ 247 (406)
T 1xi9_A 174 ---RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHI-SPGSLT--KDVPVIVMNGLSKVY 247 (406)
T ss_dssp ---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCC-CHHHHC--SSSCEEEEEESTTTT
T ss_pred ---CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCC-CHHHcC--CCceEEEEecccccc
Confidence 6888888999999999876 8999999999999999999999866532111 122232 456 89999999999
Q ss_pred cCCc---cEEe
Q 019931 325 GCQG---GFIA 332 (334)
Q Consensus 325 G~~G---G~i~ 332 (334)
|+.| |+++
T Consensus 248 ~~~G~r~G~~~ 258 (406)
T 1xi9_A 248 FATGWRLGYMY 258 (406)
T ss_dssp CCGGGCCEEEE
T ss_pred CCCccEEEEEE
Confidence 8655 7876
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-21 Score=184.21 Aligned_cols=200 Identities=15% Similarity=0.102 Sum_probs=145.4
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhcC---C-CC--ccccccCchHHHHHHHHHHHhHhCC---CcEEEeccHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHGM---G-PR--GSALICGYTNYHRLLESCLADLKKK---EDCLLCPTGFAAN 178 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~---g-~~--~sr~~~G~~~~~~~LE~~La~~~g~---e~alv~~sG~~An 178 (334)
|+++++|..+.. + ..+|.+++++.++-. + .. .+...++..+...+++++|+++++. +.++++++|++|+
T Consensus 21 g~~~i~l~~~~~-~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~ 98 (406)
T 1kmj_A 21 GLPLAYLDSAAS-A-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGI 98 (406)
T ss_dssp TEECEECCTTTC-C-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred CCceEEecCCcc-C-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHH
Confidence 456666666553 3 468899997765421 1 11 1111122356678999999999997 5678889999999
Q ss_pred HHHHHHH----hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcC
Q 019931 179 MAVIVAV----GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCC 249 (334)
Q Consensus 179 ~~ai~al----~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~ 249 (334)
..++.++ .+ ++|.|++....|.+....+.......|.+++.++.+ |+++|++++++
T Consensus 99 ~~~~~~~~~~~~~--------------~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~- 163 (406)
T 1kmj_A 99 NLVANSWGNSNVR--------------AGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE- 163 (406)
T ss_dssp HHHHHHTHHHHCC--------------TTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT-
T ss_pred HHHHHHhhhhcCC--------------CCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhcc-
Confidence 9999987 43 378888888888775544221111117888888753 78999998864
Q ss_pred CCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc-
Q 019931 250 TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG- 328 (334)
Q Consensus 250 ~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G- 328 (334)
++++|++++++|++|.+.|+++|.++|++||++||+|++|+.|... ..+ .. .++|+++.|+||.+|+.|
T Consensus 164 --~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~---~~~-~~----~~~d~~~~s~~K~~g~~G~ 233 (406)
T 1kmj_A 164 --KTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHP---VDV-QA----LDCDFYVFSGHKLYGPTGI 233 (406)
T ss_dssp --TEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSC---CCH-HH----HTCSEEEEEGGGTTSCTTC
T ss_pred --CCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCC---Ccc-cc----cCCCEEEEEchhccCCCCc
Confidence 6899999999999999999999999999999999999999875321 111 11 146899999999999887
Q ss_pred cEEeeC
Q 019931 329 GFIACR 334 (334)
Q Consensus 329 G~i~~~ 334 (334)
|+++++
T Consensus 234 G~~~~~ 239 (406)
T 1kmj_A 234 GILYVK 239 (406)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 888764
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-21 Score=184.49 Aligned_cols=200 Identities=13% Similarity=0.068 Sum_probs=145.8
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCC--CccccccCchHHHHHHHHHHHhHhC--------C-CcEEEeccHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGP--RGSALICGYTNYHRLLESCLADLKK--------K-EDCLLCPTGFAA 177 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~--~~sr~~~G~~~~~~~LE~~La~~~g--------~-e~alv~~sG~~A 177 (334)
.++|||++++ ..+..+|.|++++++.-... .++....|. .+++++++++++ . +.++++++|++|
T Consensus 23 ~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~----~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a 97 (410)
T 3e2y_A 23 PSVVNLGQGF-PDISPPSYVKEELSKAAFIDNMNQYTRGFGH----PALVKALSCLYGKIYQRQIDPNEEILVAVGAYGS 97 (410)
T ss_dssp TTSEECSSCC-CCSCCCHHHHHHHHHHHTCGGGGSCCCTTCC----HHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CCeEEecCCC-CCCCCCHHHHHHHHHHHhCccccCCCCCCCh----HHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHH
Confidence 5689999987 68888999999887653211 122222233 455566666544 2 578888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC----------------CHHH
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC----------------DMSH 241 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~----------------D~~~ 241 (334)
+..++.+++++ +|.|++..+.|..+...+... +.+++.++.+ |+++
T Consensus 98 ~~~~~~~~~~~--------------gd~vl~~~p~~~~~~~~~~~~----g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~ 159 (410)
T 3e2y_A 98 LFNSIQGLVDP--------------GDEVIIMVPFYDCYEPMVRMA----GAVPVFIPLRSKPTDGMKWTSSDWTFDPRE 159 (410)
T ss_dssp HHHHHHHHCCT--------------TCEEEEEESCCTTHHHHHHHT----TCEEEEEECEECCCCSSCCBGGGEECCHHH
T ss_pred HHHHHHHhcCC--------------CCEEEEeCCCchhhHHHHHHc----CCEEEEEeccccccccccccccCCcCCHHH
Confidence 99999988764 777888888888887777766 7887777653 7888
Q ss_pred HHHHHhcCCCCcEEEEEcCCCCCCCCcc---CHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEe
Q 019931 242 LKTLLSCCTMRKKVVVTDSLFSMDGDFA---PMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVG 318 (334)
Q Consensus 242 Le~~l~~~~~~~~lVv~e~v~n~~G~~~---pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~ 318 (334)
|++++++ ++++|++++++||+|.+. ++++|+++|++||++||+||+|+...++.........+....+.+|++.
T Consensus 160 l~~~~~~---~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 236 (410)
T 3e2y_A 160 LESKFSS---KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIG 236 (410)
T ss_dssp HHTTCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEE
T ss_pred HHhhcCC---CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEe
Confidence 8887753 789999999999999985 5899999999999999999999975553211111222222234568999
Q ss_pred cCcccccCCc---cEEeeC
Q 019931 319 TLSKAAGCQG---GFIACR 334 (334)
Q Consensus 319 SlsKa~G~~G---G~i~~~ 334 (334)
||||+||+.| ||++++
T Consensus 237 S~sK~~g~~G~r~G~~~~~ 255 (410)
T 3e2y_A 237 SAGKTFSVTGWKLGWSIGP 255 (410)
T ss_dssp EHHHHSSCGGGCCEEEECC
T ss_pred cchhhcCCCCceEEEEEEC
Confidence 9999998766 888764
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=182.76 Aligned_cols=201 Identities=14% Similarity=0.131 Sum_probs=144.3
Q ss_pred cceeEEEeecCccCCCCCCHHHHHHHHHhcC-C-CCccccccCchHHHHHHHHHHHhHh----CC-----CcEEEeccHH
Q 019931 107 QFKRLLLFSGNDYLGLSSHPTIAKAAARHGM-G-PRGSALICGYTNYHRLLESCLADLK----KK-----EDCLLCPTGF 175 (334)
Q Consensus 107 ~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~-g-~~~sr~~~G~~~~~~~LE~~La~~~----g~-----e~alv~~sG~ 175 (334)
+|+++|||++++ ..+..+|.+++++.+.-. + ..++....| ..+|++++++++ |. +.++++++|+
T Consensus 35 ~g~~~idl~~g~-~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g----~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~ 109 (412)
T 2x5d_A 35 RGEDIIDLSMGN-PDGPTPPHIVEKLCTVAQREDTHGYSTSRG----IPRLRRAISHWYRDRYDVQIDPESEAIVTIGSK 109 (412)
T ss_dssp TTCCCEECSSCC-CCSCCCHHHHHHHHHTC---------CTTC----CHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHH
T ss_pred cCCCEEecCCCC-CCCCCCHHHHHHHHHHHhCCCCCCCCCCCC----cHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChH
Confidence 458899999987 466679999998876432 1 111211222 356677777766 73 4788999999
Q ss_pred HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhc
Q 019931 176 AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSC 248 (334)
Q Consensus 176 ~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~ 248 (334)
+|+..++.+++.+ ||.|++..+.|.++...++.. |.+++.++.+ |+++|+++++
T Consensus 110 ~a~~~~~~~~~~~--------------gd~Vl~~~p~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~i~- 170 (412)
T 2x5d_A 110 EGLAHLMLATLDH--------------GDTILVPNPSYPIHIYGAVIA----GAQVRSVPLVPGIDFFNELERAIRESI- 170 (412)
T ss_dssp HHHHHHHHHHCCT--------------TCEEEEEESCCHHHHHHHHHH----TCEEEEEECSTTSCHHHHHHHHHHTEE-
T ss_pred HHHHHHHHHhCCC--------------CCEEEEcCCCchhHHHHHHHc----CCEEEEeecCCccCCCCCHHHHHHhcc-
Confidence 9999999988654 788888888888888777766 7888888764 3456666654
Q ss_pred CCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccc-cCCCcccccccCCCCCccEEEecCcccc
Q 019931 249 CTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVC-GKNGGGVAEQFNCERDVDICVGTLSKAA 324 (334)
Q Consensus 249 ~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~-G~~G~g~~~~~~~~~~~Div~~SlsKa~ 324 (334)
+++++|++++++||+|.+.| +++|+++|++||++||+||+|+.+.+ |.....+.. +.-..+.+++++||||+|
T Consensus 171 --~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~~~i~~~s~sK~~ 247 (412)
T 2x5d_A 171 --PKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQ-VPGAKDIAVEFFTLSKSY 247 (412)
T ss_dssp --SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGG-STTGGGTEEEEEECC-CC
T ss_pred --cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhh-ccCccCcEEEEecCcccc
Confidence 36788888899999999877 68899999999999999999998765 222222322 111135689999999999
Q ss_pred cCCc---cEEeeC
Q 019931 325 GCQG---GFIACR 334 (334)
Q Consensus 325 G~~G---G~i~~~ 334 (334)
|+.| ||++++
T Consensus 248 ~~~G~r~G~~~~~ 260 (412)
T 2x5d_A 248 NMAGWRIGFMVGN 260 (412)
T ss_dssp SCTTSCCEEEEEC
T ss_pred CCcccceEEEEcC
Confidence 8766 888764
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-21 Score=185.81 Aligned_cols=204 Identities=12% Similarity=0.073 Sum_probs=148.0
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhc-CCC--CccccccCchHHHHHHHHHHHhHhCC-----CcEEEeccHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHG-MGP--RGSALICGYTNYHRLLESCLADLKKK-----EDCLLCPTGFAANMA 180 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~--~~sr~~~G~~~~~~~LE~~La~~~g~-----e~alv~~sG~~An~~ 180 (334)
..+|||+.++ .++..+|.+++++.+.- .+. ..+....|..++.+++.+.+.+.+|. +.++++++|++|+..
T Consensus 28 ~~~i~l~~g~-~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~ 106 (422)
T 3fvs_A 28 HDVVNLGQGF-PDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFT 106 (422)
T ss_dssp SCCEECCCSS-CSSCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHH
T ss_pred CCceEeCCCC-CCCCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHH
Confidence 5789999987 67888999999876542 221 12222334445555555555555553 468888999999999
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----------------CHHHHH
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----------------DMSHLK 243 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----------------D~~~Le 243 (334)
++.+++++ +|.|++..+.|..+...+... +.+++.++.+ |+++|+
T Consensus 107 ~~~~~~~~--------------gd~vl~~~p~~~~~~~~~~~~----g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~ 168 (422)
T 3fvs_A 107 AFQALVDE--------------GDEVIIIEPFFDCYEPMTMMA----GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELA 168 (422)
T ss_dssp HHHHHCCT--------------TCEEEEEESCCTTHHHHHHHT----TCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHH
T ss_pred HHHHHcCC--------------CCEEEEcCCCchhhHHHHHHc----CCEEEEEecccccccccccccccCCCCCHHHHH
Confidence 99988764 777887777887877777766 7888777643 778888
Q ss_pred HHHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecC
Q 019931 244 TLLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTL 320 (334)
Q Consensus 244 ~~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sl 320 (334)
+++++ ++++|++++++||+|.+.| +++|+++|++||++||+||+|+..+++.........+....+.+|++.||
T Consensus 169 ~~~~~---~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 245 (422)
T 3fvs_A 169 GKFTS---RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSA 245 (422)
T ss_dssp TTCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEH
T ss_pred hhcCC---CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecc
Confidence 77753 7899999999999999984 89999999999999999999997655322111111222222456899999
Q ss_pred cccccCCc---cEEeeC
Q 019931 321 SKAAGCQG---GFIACR 334 (334)
Q Consensus 321 sKa~G~~G---G~i~~~ 334 (334)
||+||+.| ||++++
T Consensus 246 sK~~g~~G~r~G~~~~~ 262 (422)
T 3fvs_A 246 GKTFSATGWKVGWVLGP 262 (422)
T ss_dssp HHHHTCGGGCCEEEECC
T ss_pred hhccCCccceEEEEEeC
Confidence 99998766 888764
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-21 Score=188.68 Aligned_cols=185 Identities=15% Similarity=0.133 Sum_probs=141.3
Q ss_pred CHHHHHHHHHhcCCC----CccccccCchHHHHHHHHHHHhHhCCCcEEE---eccHHHHHHHHHHHHhhhhhhccCCCc
Q 019931 125 HPTIAKAAARHGMGP----RGSALICGYTNYHRLLESCLADLKKKEDCLL---CPTGFAANMAVIVAVGNIASLLAGDEK 197 (334)
Q Consensus 125 ~p~v~~a~~~~g~g~----~~sr~~~G~~~~~~~LE~~La~~~g~e~alv---~~sG~~An~~ai~al~~~~~~~~~~~~ 197 (334)
.++|.+|+.++..+. ..+.+.++ ...+++||+++|+++|.+.+++ |+||++||..++.+++++
T Consensus 45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~-~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~p--------- 114 (427)
T 3i16_A 45 QLKVLNAFQEERISEAHFTNSSGYGYG-DIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRP--------- 114 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTT-CHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCCT---------
T ss_pred HHHHHHHHHHhchhHHhcCCCCCCCCC-HHHHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhCC---------
Confidence 478888887643221 11112222 2347899999999999999999 899999999999998875
Q ss_pred cCCCCCeEEEEcC-CCchhhHHHH--------HHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcC---
Q 019931 198 SFKDEKIAIFSDA-LNHASIIDGI--------RIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDS--- 260 (334)
Q Consensus 198 ~~~~~gd~Vl~d~-~~H~s~~~g~--------~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~--- 260 (334)
||.|+++. ..|......+ ... ...|.+++.++. .|+++|++++++. +++++|++++
T Consensus 115 -----GD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l-~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~ 187 (427)
T 3i16_A 115 -----GNTMLSVCGEPYDTLHDVIGITENSNMGSL-KEFGINYKQVDLKEDGKPNLEEIEKVLKED-ESITLVHIQRSTG 187 (427)
T ss_dssp -----TCEEEESSSSCCGGGHHHHTCSCCCSSCCT-GGGTCEEEECCCCTTSSCCHHHHHHHHHTC-TTEEEEEEECSCC
T ss_pred -----CCEEEEeCCCccHHHHHHHhccccchHHHH-HHcCCEEEEecCccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCC
Confidence 78888887 6666554332 111 122788888887 5999999999732 2789999999
Q ss_pred -CCCCCCCccCHHHHHHHHHH--cCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC----CccEEee
Q 019931 261 -LFSMDGDFAPMVELVKLRRK--YGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 261 -v~n~~G~~~pL~~L~ela~k--~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
++||+|.+.|+++|+++|++ +|+++++|++|+.+++... +...++||+++|+||++|+ .||||++
T Consensus 188 ~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~--------p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~ 259 (427)
T 3i16_A 188 YGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKE--------PTDVGADLIAGSLIKNIGGGIAPTGGYLAG 259 (427)
T ss_dssp SSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSC--------GGGGTCSEEEEETTSGGGTTTCCSCEEEEE
T ss_pred CCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccCC--------ccccCCeEEEecCcccCCCCCCceEEEEEE
Confidence 99999999999999999999 9999999999998764321 1223579999999999985 6899987
Q ss_pred C
Q 019931 334 R 334 (334)
Q Consensus 334 ~ 334 (334)
+
T Consensus 260 ~ 260 (427)
T 3i16_A 260 T 260 (427)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=183.10 Aligned_cols=202 Identities=13% Similarity=0.052 Sum_probs=145.3
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCC----CCccccccCchHHHHHHHHHHHhHhC----CC-cEEEeccHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMG----PRGSALICGYTNYHRLLESCLADLKK----KE-DCLLCPTGFAANM 179 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g----~~~sr~~~G~~~~~~~LE~~La~~~g----~e-~alv~~sG~~An~ 179 (334)
.++|||.++++ .+..+|.+++++.+.-.. ...+....|...+.+++.+.+.+++| .+ .++++++|++|+.
T Consensus 37 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~ 115 (429)
T 1yiz_A 37 YKPLNLGQGFP-DYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY 115 (429)
T ss_dssp HCCEECCSSSC-SSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CCEEEecCCCC-CCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHH
Confidence 56899998864 566789999988664321 11222223343444444444444446 24 7888899999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC---------------CCHHHHHH
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH---------------CDMSHLKT 244 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~---------------~D~~~Le~ 244 (334)
.++++++.+ ||.|++..+.|......++.. |.+++.++. .|+++|++
T Consensus 116 ~~~~~~~~~--------------gd~Vl~~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 177 (429)
T 1yiz_A 116 ATIQGHVDE--------------GDEVIIIEPFFDCYEPMVKAA----GGIPRFIPLKPNKTGGTISSADWVLDNNELEA 177 (429)
T ss_dssp HHHHHHCCT--------------TCEEEEEESCCTTHHHHHHHT----TCEEEEEECBCCCSSSSEEGGGCBCCHHHHHH
T ss_pred HHHHHhcCC--------------CCEEEEcCCCchhHHHHHHHc----CCEEEEEeCCcccccccccccCcccCHHHHHH
Confidence 999988654 677887777777777777665 777777763 47888888
Q ss_pred HHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC--CCCccEEEec
Q 019931 245 LLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC--ERDVDICVGT 319 (334)
Q Consensus 245 ~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~--~~~~Div~~S 319 (334)
++++ ++++|++++++||+|.+.| +++|+++|++||++||+||+|+...++ |.+......+ ..+.|+++.|
T Consensus 178 ~l~~---~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~s 252 (429)
T 1yiz_A 178 LFNE---KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFE--PFEHIRICTLPGMWERTITIGS 252 (429)
T ss_dssp HCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT--TSCCCCGGGSTTTGGGEEEEEE
T ss_pred Hhcc---CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccC--CCCCcChhhccCCcCceEEEec
Confidence 8853 7888988999999999886 899999999999999999999975553 3222111122 2456899999
Q ss_pred CcccccCCc---cEEeeC
Q 019931 320 LSKAAGCQG---GFIACR 334 (334)
Q Consensus 320 lsKa~G~~G---G~i~~~ 334 (334)
|||+||+.| |+++++
T Consensus 253 ~sK~~~~~G~r~G~~~~~ 270 (429)
T 1yiz_A 253 AGKTFSLTGWKIGWAYGP 270 (429)
T ss_dssp HHHHHTCGGGCCEEEESC
T ss_pred chhccCCCCcceEEEEeC
Confidence 999998766 888764
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-21 Score=182.44 Aligned_cols=198 Identities=17% Similarity=0.109 Sum_probs=150.6
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHHh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al~ 186 (334)
+++|||++|+. .+..+|.+++++.+.-.....+... . ..+|++++++++|. +.++++++|++|+..++.+++
T Consensus 30 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~y~~~----~-~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~ 103 (365)
T 3get_A 30 KEVIKLASNEN-PFGTPPKAIECLRQNANKAHLYPDD----S-MIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKL 103 (365)
T ss_dssp SCCEECSSCCC-TTCSCHHHHHHHHHHGGGTTSCCCT----T-CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC
T ss_pred CceEEecCCCC-CCCCCHHHHHHHHHHHHhhccCCCC----C-hHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHh
Confidence 68999999863 3567999999887654322222111 1 26899999999994 578899999999999999887
Q ss_pred hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCC
Q 019931 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSL 261 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v 261 (334)
++ ||.|++..+.|.++...++.. |.+++.++. .|+++|+++++ +++++|+++++
T Consensus 104 ~~--------------gd~vl~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p 162 (365)
T 3get_A 104 NS--------------KNAFLQAGVTFAMYEIYAKQC----GAKCYKTQSITHNLDEFKKLYETHK---DEIKLIFLCLP 162 (365)
T ss_dssp CT--------------TCEEEECSSCCTHHHHHHHHH----TCEEEECSSSSCCHHHHHHHHHHTT---TTEEEEEEESS
T ss_pred CC--------------CCEEEEeCCChHHHHHHHHHc----CCEEEEEecCCCCCCCHHHHHHHhC---CCCCEEEEcCC
Confidence 64 788999999999888888777 889998886 46677777776 37899999999
Q ss_pred CCCCCCccCHHHHHHHHH--HcCCEEEEecCcccccc--c-CCCcccccccCCCCCccEEEecCcccccCCc---cEEee
Q 019931 262 FSMDGDFAPMVELVKLRR--KYGFLLVLDDAHGTFVC--G-KNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 262 ~n~~G~~~pL~~L~ela~--k~ga~LivDeAh~~Gv~--G-~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
+||+|.+.|+++|.++++ ++|+++|+||+|+.+.+ . ....+.....+ ..+.+++++||||++|..| ||+++
T Consensus 163 ~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G~r~G~~~~ 241 (365)
T 3get_A 163 NNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIK-EFDNVLYLGTFSKLYGLGGLRIGYGIA 241 (365)
T ss_dssp CTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHH-HCTTEEEEEESSSTTSCTTTCCEEEEE
T ss_pred CCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhc-cCCCEEEEeecchHhcCcchheEEEEc
Confidence 999999999999888888 77999999999997653 2 11122222111 1245689999999998766 88876
Q ss_pred C
Q 019931 334 R 334 (334)
Q Consensus 334 ~ 334 (334)
+
T Consensus 242 ~ 242 (365)
T 3get_A 242 N 242 (365)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=8.9e-21 Score=181.63 Aligned_cols=202 Identities=15% Similarity=0.114 Sum_probs=145.6
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCC----C-cEEEeccHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKK----E-DCLLCPTGFAANMAVI 182 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~----e-~alv~~sG~~An~~ai 182 (334)
..++||+++++ .+..+|.+++++.+.- .+...+....|...+.+++.+.+.+++|. + .++++++|++|+..++
T Consensus 30 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~ 108 (386)
T 1u08_A 30 HQAINLSQGFP-DFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAI 108 (386)
T ss_dssp TTCEECCCSSC-SSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHH
T ss_pred CCeEEecCCCC-CCCCCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHH
Confidence 45889999875 6667899999776542 22222222234434444444444443462 4 7888899999999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC------CCHHHHHHHHhcCCCCcEEE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH------CDMSHLKTLLSCCTMRKKVV 256 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~------~D~~~Le~~l~~~~~~~~lV 256 (334)
.+++.+ ||.|++..+.|.++...++.. |.+++.++. .|+++|++++++ ++++|
T Consensus 109 ~~~~~~--------------gd~vl~~~p~~~~~~~~~~~~----g~~~~~v~~~~~~~~~d~~~l~~~l~~---~~~~v 167 (386)
T 1u08_A 109 TALVRN--------------GDEVICFDPSYDSYAPAIALS----GGIVKRMALQPPHFRVDWQEFAALLSE---RTRLV 167 (386)
T ss_dssp HHHCCT--------------TCEEEEEESCCTTHHHHHHHT----TCEEEEEECCTTTCCCCHHHHHHHCCT---TEEEE
T ss_pred HHhCCC--------------CCEEEEeCCCchhHHHHHHHc----CCEEEEeecCcccCcCCHHHHHHhhcc---cCEEE
Confidence 988654 777888878888887777666 788888775 378999988853 68899
Q ss_pred EEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC--CCCccEEEecCcccccCCc---
Q 019931 257 VTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC--ERDVDICVGTLSKAAGCQG--- 328 (334)
Q Consensus 257 v~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~--~~~~Div~~SlsKa~G~~G--- 328 (334)
++++++||+|.+.| +++|+++|++||+++|+||+|+...++ |.+......+ ..+.|++++||||+||+.|
T Consensus 168 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 245 (386)
T 1u08_A 168 ILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFS--QQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKV 245 (386)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCC--SSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCC
T ss_pred EEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccC--CCCCcChhcccCccCcEEEEecchhhcCCcccce
Confidence 89999999999886 688999999999999999999976553 2222111122 2356899999999998666
Q ss_pred cEEeeC
Q 019931 329 GFIACR 334 (334)
Q Consensus 329 G~i~~~ 334 (334)
||++++
T Consensus 246 G~~~~~ 251 (386)
T 1u08_A 246 GYCVAP 251 (386)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 888764
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-21 Score=188.40 Aligned_cols=184 Identities=20% Similarity=0.198 Sum_probs=140.0
Q ss_pred HHHHHHHHHhcCCCC----ccccccCchHHHHHHHHHHHhHhCCCcEEE---eccHHHHHHHHHHHHhhhhhhccCCCcc
Q 019931 126 PTIAKAAARHGMGPR----GSALICGYTNYHRLLESCLADLKKKEDCLL---CPTGFAANMAVIVAVGNIASLLAGDEKS 198 (334)
Q Consensus 126 p~v~~a~~~~g~g~~----~sr~~~G~~~~~~~LE~~La~~~g~e~alv---~~sG~~An~~ai~al~~~~~~~~~~~~~ 198 (334)
++|.+++.+...+.. ...+.++ ...+++||+++++++|.+.+++ ++||++||..++.+++++
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y~-~~g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~p---------- 115 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTNSSGYGYN-DIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRP---------- 115 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTT-CHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCCT----------
T ss_pred HHHHHHHHHHHHHHHhcccCcCCCCC-chhHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcCC----------
Confidence 788888776432210 1111222 2347899999999999999999 899999999999998875
Q ss_pred CCCCCeEEEEcC-CCchhhHHHH--------HHhhhcCCcEEEEeeC----CCHHHHHHHHhcCCCCcEEEEEcC----C
Q 019931 199 FKDEKIAIFSDA-LNHASIIDGI--------RIAERTKMVEVFVYKH----CDMSHLKTLLSCCTMRKKVVVTDS----L 261 (334)
Q Consensus 199 ~~~~gd~Vl~d~-~~H~s~~~g~--------~ls~~~~g~~v~~~~~----~D~~~Le~~l~~~~~~~~lVv~e~----v 261 (334)
||.|+++. ..|......+ ... ...|++++.++. .|+++|++++++. +++++|++++ +
T Consensus 116 ----GD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l-~~~G~~~~~v~~~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp 189 (427)
T 3hvy_A 116 ----NDTMMSICGMPYDTLHDIIGMDDSKKVGSL-REYGVKYKMVDLKDGKVDINTVKEELKKD-DSIKLIHIQRSTGYG 189 (427)
T ss_dssp ----TCEEEECSSSCCGGGHHHHTCCTTCCSCCT-GGGTCEEEECCCBTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSS
T ss_pred ----CCEEEEeCCCCchhHHHHhccccchhhhHH-HHcCCEEEEecCCCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCC
Confidence 78888876 6665544222 111 112788888887 7999999999732 2789999999 9
Q ss_pred CCCCCCccCHHHHHHHHHH--cCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC----CccEEeeC
Q 019931 262 FSMDGDFAPMVELVKLRRK--YGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC----QGGFIACR 334 (334)
Q Consensus 262 ~n~~G~~~pL~~L~ela~k--~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~----~GG~i~~~ 334 (334)
+||+|.+.|+++|+++|++ +|++||+|++|+.++++.. ++..++||+++|+||++|+ .||+|+++
T Consensus 190 ~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~--------p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~ 260 (427)
T 3hvy_A 190 WRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKE--------PTDVGADIIAGSLIKNIGGGIATTGGYIAGK 260 (427)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSC--------GGGGTCSEEEEETTSGGGTTTCCSCEEEEEC
T ss_pred CCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCCC--------CcccCCeEEEECCcccccccccceEEEEEEC
Confidence 9999999999999999999 8999999999998764321 1223579999999999985 68999875
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=181.79 Aligned_cols=201 Identities=12% Similarity=0.082 Sum_probs=144.6
Q ss_pred eEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCC----C-cEEEeccHHHHHHHHHH
Q 019931 110 RLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKK----E-DCLLCPTGFAANMAVIV 183 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~----e-~alv~~sG~~An~~ai~ 183 (334)
.+|||++++. .+..+|.+++++.+.- .+...+....|...+.+++.+.+.+.+|. + .++++++|++|+..++.
T Consensus 26 ~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~ 104 (411)
T 2o0r_A 26 GAVNLGQGFP-DEDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVL 104 (411)
T ss_dssp TCEESSCSSC-SSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHH
T ss_pred CeeeccCcCC-CCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHH
Confidence 4789988863 6667899999876542 22222222333334444444444443462 4 78888999999999999
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC--------CCHHHHHHHHhcCCCCcEE
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH--------CDMSHLKTLLSCCTMRKKV 255 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~--------~D~~~Le~~l~~~~~~~~l 255 (334)
++.++ ||.|++..+.|.++...++.. |.+++.++. .|+++|++++++ ++++
T Consensus 105 ~~~~~--------------gd~Vl~~~~~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~~d~~~l~~~l~~---~~~~ 163 (411)
T 2o0r_A 105 GLVEP--------------GSEVLLIEPFYDSYSPVVAMA----GAHRVTVPLVPDGRGFALDADALRRAVTP---RTRA 163 (411)
T ss_dssp HHCCT--------------TCEEEEEESCCTTHHHHHHHT----TCEEEEEECEEETTEEECCHHHHHHHCCT---TEEE
T ss_pred HhcCC--------------CCEEEEeCCCcHhHHHHHHHc----CCEEEEeeccccccCCCCCHHHHHHhhcc---CceE
Confidence 88654 788888888888887777666 788777764 488999998863 6889
Q ss_pred EEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC--CCCccEEEecCcccccCCc--
Q 019931 256 VVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC--ERDVDICVGTLSKAAGCQG-- 328 (334)
Q Consensus 256 Vv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~--~~~~Div~~SlsKa~G~~G-- 328 (334)
|++++++||+|.+.| +++|+++|++||++||+||+|+.+.++ |.+......+ ..+.|+++.||||+||+.|
T Consensus 164 v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 241 (411)
T 2o0r_A 164 LIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFD--HARHLPLAGFDGMAERTITISSAAKMFNCTGWK 241 (411)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCT--TCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTC
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccC--CCCCcChhhccCCCCCEEEEeechhhcCCccce
Confidence 999999999999877 589999999999999999999976553 3221111112 2356899999999998666
Q ss_pred -cEEeeC
Q 019931 329 -GFIACR 334 (334)
Q Consensus 329 -G~i~~~ 334 (334)
|+++++
T Consensus 242 ~G~~~~~ 248 (411)
T 2o0r_A 242 IGWACGP 248 (411)
T ss_dssp EEEEECC
T ss_pred EEEEeeC
Confidence 888764
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=182.83 Aligned_cols=198 Identities=15% Similarity=0.173 Sum_probs=150.0
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC--CC---C---ccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM--GP---R---GSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAAN 178 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~--g~---~---~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An 178 (334)
.-|+|+.++. ..+|.+++++.++-. .. . .+....+..+...+++++++++++.+ .++++++|++|+
T Consensus 23 ~iyld~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~ 98 (423)
T 3lvm_A 23 PIYLDYSATT----PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESD 98 (423)
T ss_dssp SEECBTTTCC----CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHH
T ss_pred CEeecCCCcC----CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHH
Confidence 4566665542 358999998876533 11 1 12222334567789999999999976 789999999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCc
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRK 253 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~ 253 (334)
..++.++... ..+++|.|++....|.++...+.... ..+++++.++.+ |+++|++++++ ++
T Consensus 99 ~~a~~~l~~~----------~~~~gd~Vl~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~ 164 (423)
T 3lvm_A 99 NLAIKGAANF----------YQKKGKHIITSKTEHKAVLDTCRQLE-REGFEVTYLAPQRNGIIDLKELEAAMRD---DT 164 (423)
T ss_dssp HHHHHHHHHH----------HTTTCCEEEEETTSCHHHHHHHHHHH-HTTCEEEEECCCTTSCCCHHHHHHHCCT---TE
T ss_pred HHHHHHHHHh----------hccCCCEEEECCccchHHHHHHHHHH-HcCCEEEEeccCCCCccCHHHHHHhcCC---Cc
Confidence 9999988751 01137889999999998877765432 227888888765 89999998864 78
Q ss_pred EEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccccCCc-cEE
Q 019931 254 KVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAAGCQG-GFI 331 (334)
Q Consensus 254 ~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~G~~G-G~i 331 (334)
++|++++++|++|.+.|+++|+++|++||++||+||+|+.+.+. +.+ ..++|+++.|+||.+|+.| |++
T Consensus 165 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~---------~~~~~~~~di~~~s~sK~~g~~g~G~~ 235 (423)
T 3lvm_A 165 ILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLP---------IDLSQLKVDLMSFSGHKIYGPKGIGAL 235 (423)
T ss_dssp EEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC---------CCTTTSCCSEEEEESTTTTSCSSCEEE
T ss_pred EEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCC---------cChhhcCCCEEEechHHhcCCCCeEEE
Confidence 99999999999999999999999999999999999999875431 111 1246899999999988765 776
Q ss_pred ee
Q 019931 332 AC 333 (334)
Q Consensus 332 ~~ 333 (334)
++
T Consensus 236 ~~ 237 (423)
T 3lvm_A 236 YV 237 (423)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=184.75 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=131.4
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+...++|++|++++|.+.+++++||++|+..++.+++++ +|.|++....|.+....+.......|
T Consensus 57 ~~~~~~l~~~la~~~g~~~~v~~~sGt~A~~~~l~~~~~~--------------gd~vi~~~~~~~~~~~~~~~~~~~~g 122 (421)
T 2ctz_A 57 NPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLAQA--------------GDNIVSTPNLYGGTFNQFKVTLKRLG 122 (421)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCT--------------TCEEEECSCCCHHHHHHHHTHHHHTT
T ss_pred ChHHHHHHHHHHHHhCCCceEEecCHHHHHHHHHHHHhCC--------------CCEEEEeCCCchHHHHHHHHHHHHcC
Confidence 4778999999999999999999999999999999987654 78888888888887776631111228
Q ss_pred cEEEEe-eCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCc-ccccccCCCcccccc
Q 019931 229 VEVFVY-KHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAH-GTFVCGKNGGGVAEQ 306 (334)
Q Consensus 229 ~~v~~~-~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh-~~Gv~G~~G~g~~~~ 306 (334)
++++.+ +.+|+++|++++++ ++++|++++++|++|.+.|+++|.++|++||++||+|++| ++|.. +..+
T Consensus 123 ~~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~---~~~~--- 193 (421)
T 2ctz_A 123 IEVRFTSREERPEEFLALTDE---KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL---LRPL--- 193 (421)
T ss_dssp CEEEECCTTCCHHHHHHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS---CCGG---
T ss_pred CEEEEECCCCCHHHHHHhhcc---CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccc---CCcc---
Confidence 899999 88899999999874 7899999999999999999999999999999999999999 76632 2221
Q ss_pred cCCCCCccEEEecCcccccC----CccEEee
Q 019931 307 FNCERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 307 ~~~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+ .++|+++.|++|.+|+ .||++++
T Consensus 194 -~--~~~Di~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 194 -A--WGAALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp -G--GTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred -c--cCCeEEEECCcccccCCCCcEEEEEEe
Confidence 1 2468999999999986 4566664
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=183.06 Aligned_cols=160 Identities=13% Similarity=0.087 Sum_probs=132.6
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||++|++++|.+++++++||++|+..++.+++++ ||.|++....|.+....+.......+
T Consensus 65 ~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~al~~~~~~--------------gd~Vi~~~~~y~~~~~~~~~~~~~~g 130 (392)
T 3qhx_A 65 NPTRTALEAALAAVEDAAFGRAFSSGMAAADCALRAMLRP--------------GDHVVIPDDAYGGTFRLIDKVFTGWN 130 (392)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHCCT--------------TCEEEEETTCCHHHHHHHHHTGGGGT
T ss_pred ChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCC--------------CCEEEEeCCCcchHHHHHHHHHHhcC
Confidence 4777999999999999999999999999999999988654 77888888888776665532222238
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
.+++.++.+|+++|++++++ ++++|++++++|++|.+.|+++|+++|++||++||+|++|+.++... ..
T Consensus 131 ~~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~~-------~~- 199 (392)
T 3qhx_A 131 VEYTPVALADLDAVRAAIRP---TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQ-------PL- 199 (392)
T ss_dssp CEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCC-------GG-
T ss_pred cEEEEeCCCCHHHHHHhhCC---CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccccCC-------hH-
Confidence 89999999999999999874 78999999999999999999999999999999999999998764321 11
Q ss_pred CCCCccEEEecCcccccCC----ccEEeeC
Q 019931 309 CERDVDICVGTLSKAAGCQ----GGFIACR 334 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~~----GG~i~~~ 334 (334)
..++||++.|++|.+|+. ||+++++
T Consensus 200 -~~~~di~~~S~sK~lg~~g~~~~G~v~~~ 228 (392)
T 3qhx_A 200 -SLGADVVLHSTTKYIGGHSDVVGGALVTN 228 (392)
T ss_dssp -GGTCSEEEEETTTTTTCSSCCCCEEEEES
T ss_pred -HhCCcEEEEcCccccCCCCCceEEEEEEC
Confidence 234689999999999864 6887753
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=176.92 Aligned_cols=207 Identities=16% Similarity=0.112 Sum_probs=152.0
Q ss_pred EeecCccCCCC---CCHHHHHHHHHhcCC-CCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHh
Q 019931 113 LFSGNDYLGLS---SHPTIAKAAARHGMG-PRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 113 ~f~sn~yLgl~---~~p~v~~a~~~~g~g-~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~ 186 (334)
++.+++|+|.. .+|.+++++.++-.. ...+....+.....+++++++++++|.+ .++++++|++|+..++.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~ 107 (397)
T 3f9t_A 28 KYEDGNIFGSMCSNVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIK 107 (397)
T ss_dssp CGGGTCBCSCSCCCCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEecCCCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHH
Confidence 34566777777 368899988775432 2222222355677789999999999875 45888999999999999887
Q ss_pred hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCC
Q 019931 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSL 261 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v 261 (334)
.+..-. .......+++|.|++....|.++...++.. |.+++.++.+ |+++|++++++. ++++|+++++
T Consensus 108 ~~~~~~-~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~ 180 (397)
T 3f9t_A 108 NIWREK-RRKGLSKNEHPKIIVPITAHFSFEKGREMM----DLEYIYAPIKEDYTIDEKFVKDAVEDY--DVDGIIGIAG 180 (397)
T ss_dssp HHHHHH-HHTTCCCCSSCEEEEETTCCTHHHHHHHHH----TCEEEEECBCTTSSBCHHHHHHHHHHS--CCCEEEEEBS
T ss_pred HHHHhh-hhhcccCCCCeEEEECCcchhHHHHHHHHc----CceeEEEeeCCCCcCCHHHHHHHHhhc--CCeEEEEECC
Confidence 530000 000000124789999999999998888877 8899988875 899999999752 5788888999
Q ss_pred CCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccc-----cccCCCCCccEEEecCcccccC
Q 019931 262 FSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-----EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 262 ~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-----~~~~~~~~~Div~~SlsKa~G~ 326 (334)
+|++|.+.|+++|.++|++||++||+||+|+.+.++..+.+.. ..+.+..++|+++.|++|.+++
T Consensus 181 ~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~ 250 (397)
T 3f9t_A 181 TTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHC 250 (397)
T ss_dssp CTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGGTCSEEECCTTTTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccccCCeEEEccccccCC
Confidence 9999999999999999999999999999999877655443211 0111111678999999999853
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.4e-21 Score=182.86 Aligned_cols=206 Identities=16% Similarity=0.080 Sum_probs=143.9
Q ss_pred ceeEEEeecCcc-CCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHh----C----CCcEEEeccHHHHH
Q 019931 108 FKRLLLFSGNDY-LGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLK----K----KEDCLLCPTGFAAN 178 (334)
Q Consensus 108 g~~~l~f~sn~y-Lgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~----g----~e~alv~~sG~~An 178 (334)
|+++|||+++.. +..-.+|.+++++.+.-........ ++......++++++++++ | .+.++++++|++|+
T Consensus 33 g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~ 111 (407)
T 2zc0_A 33 GVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGAL 111 (407)
T ss_dssp SCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHH
T ss_pred CCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHH
Confidence 478999988642 2222568888876543211111112 333233467777888777 7 35678888889999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC----CCHHHHHHHHh----cCC
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH----CDMSHLKTLLS----CCT 250 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~----~D~~~Le~~l~----~~~ 250 (334)
..++.+++.+ ||.|++..+.|......++.. |.+++.++. .|+++|+++++ +.
T Consensus 112 ~~~~~~~~~~--------------gd~vl~~~p~~~~~~~~~~~~----g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~- 172 (407)
T 2zc0_A 112 DLLGRVLIDP--------------GDVVITENPSYINTLLAFEQL----GAKIEGVPVDNDGMRVDLLEEKIKELKAKG- 172 (407)
T ss_dssp HHHHHHHCCT--------------TCEEEEEESCCHHHHHHHHTT----TCEEEEEEEETTEECHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhcCC--------------CCEEEEeCCChHHHHHHHHHc----CCEEEEcccCCCCCCHHHHHHHHHhhhccc-
Confidence 9999988654 777888878887777777665 788887775 38999999987 32
Q ss_pred CCcEEE-EEcCCCCCCCCccCHH---HHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC
Q 019931 251 MRKKVV-VTDSLFSMDGDFAPMV---ELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 251 ~~~~lV-v~e~v~n~~G~~~pL~---~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
+++++| ++++++||+|.+.|++ +|+++|++||++||+||+|+.+.++.........++.. +.+++++||||+||+
T Consensus 173 ~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~i~~~s~sK~~~~ 251 (407)
T 2zc0_A 173 QKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNE-GRVIVAGTLSKVLGT 251 (407)
T ss_dssp CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSS-CCEEEEEESTTTTCT
T ss_pred CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCC-CCEEEEcccccccCC
Confidence 256776 6889999999999876 89999999999999999999765532111112222222 345889999999983
Q ss_pred --CccEEeeC
Q 019931 327 --QGGFIACR 334 (334)
Q Consensus 327 --~GG~i~~~ 334 (334)
.+||++++
T Consensus 252 G~r~G~~~~~ 261 (407)
T 2zc0_A 252 GFRIGWIIAE 261 (407)
T ss_dssp TSCCEEEECC
T ss_pred CcceEEEecC
Confidence 24888764
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-22 Score=195.64 Aligned_cols=217 Identities=18% Similarity=0.157 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHccccccccccccCCCCccccccCCCCCCCCcchhcccccccccceeeeechhhhhhhhcccCCCCCC
Q 019931 8 DKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQISISDSTFQRWLHDVPSSGDE 87 (334)
Q Consensus 8 ~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 87 (334)
.+..|+++.++.++++.||.+.|++++|+
T Consensus 35 l~~~Dpei~~~i~~E~~RQ~~~ieLIASE--------------------------------------------------- 63 (490)
T 3ou5_A 35 LSDSDPEMWELLQREKDRQCRGLELIASE--------------------------------------------------- 63 (490)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHSEECCTTC---------------------------------------------------
T ss_pred hhhhCHHHHHHHHHHHHHHHcCceEecCC---------------------------------------------------
Confidence 56789999999999999999999999887
Q ss_pred cceeecCCCCCcccchhcccceeEEEeecCccCCCCCCHHHHH-----HHHHhcCCCCccccccCchHHHHHHHH----H
Q 019931 88 NEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAK-----AAARHGMGPRGSALICGYTNYHRLLES----C 158 (334)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~g~~~l~f~sn~yLgl~~~p~v~~-----a~~~~g~g~~~sr~~~G~~~~~~~LE~----~ 158 (334)
||+| |.|.+ ..++|..|.++.|++.|+. ..+++|. +
T Consensus 64 -------------------------N~~S---------~aV~~a~gS~ltnKYaEGyPg~RyYgGce-~vD~iE~la~~r 108 (490)
T 3ou5_A 64 -------------------------NFCS---------RAALEALGSCLNNKYSEGYPGKRYYGGAE-VVDEIELLCQRR 108 (490)
T ss_dssp -------------------------CCCC---------HHHHHHHTSGGGTCCCCC----------C-HHHHHHHHHHHH
T ss_pred -------------------------CcCC---------HHHHHHhcCcccccccCCCCCccccCCCh-HHHHHHHHHHHH
Confidence 4544 44555 3467999999999998874 3366555 4
Q ss_pred HHhHhCCCcE----EEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchh-hHHHH-----HHhhhcC
Q 019931 159 LADLKKKEDC----LLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHAS-IIDGI-----RIAERTK 227 (334)
Q Consensus 159 La~~~g~e~a----lv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s-~~~g~-----~ls~~~~ 227 (334)
..++||++.+ -+. .||+.||++++.+|++| ||.|+...+.|+. +.++. .++....
T Consensus 109 ak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~P--------------GD~ilg~~l~~GGHltHg~~~~~~~v~~sg~ 174 (490)
T 3ou5_A 109 ALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQP--------------HDRIMGLDLPDGGHLTHGYMSDVKRISATSI 174 (490)
T ss_dssp HHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC---------------CCCEECBC-----------------------
T ss_pred HHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcCC--------------CCEEEecccCCCCcccccccCCCcccccccc
Confidence 4568898875 555 79999999999999986 8889988777655 33332 2221111
Q ss_pred CcEEEEeeC------CCHHHHHHHHhcCCCCcEEE-EEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCC
Q 019931 228 MVEVFVYKH------CDMSHLKTLLSCCTMRKKVV-VTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNG 300 (334)
Q Consensus 228 g~~v~~~~~------~D~~~Le~~l~~~~~~~~lV-v~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G 300 (334)
-.+.+.|.. .|++.++++.++. ++++| +.-+.|+. ..|+++++++|++.|++|++|.||..|++-
T Consensus 175 ~~~~~~Y~vd~~t~~IDyd~~~~~A~~~--kPklIi~G~SaY~r---~id~~~~reIAd~vGA~Lm~DmAHiaGLVA--- 246 (490)
T 3ou5_A 175 FFESMPYKLNPKTGLIDYNQLALTARLF--RPRLIIAGTSAYAR---LIDYARMREVCDEVKAHLLADMAHISGLVA--- 246 (490)
T ss_dssp -----CBCEETTTTEECHHHHHHHHHHH--CCSEEEECCSSCCS---CCCHHHHHHHHHHHTCEEEEECGGGHHHHH---
T ss_pred cccccccccCCCCCcccHHHHHHHHhhc--CCCeEEECCccCcc---ccCHHHHHHHHhhcccEEEechhhhhhhhc---
Confidence 223444432 2999999999875 45554 55566655 789999999999999999999999999873
Q ss_pred cccccccCCCCCccEEEecCcccc-cCCccEEeeC
Q 019931 301 GGVAEQFNCERDVDICVGTLSKAA-GCQGGFIACR 334 (334)
Q Consensus 301 ~g~~~~~~~~~~~Div~~SlsKa~-G~~GG~i~~~ 334 (334)
.|. +.++.+.+||+++|.+|+| |+.||+|+++
T Consensus 247 ~g~--~psP~~~ADvVTtTTHKTLrGPrGG~Il~~ 279 (490)
T 3ou5_A 247 AKV--IPSPFKHADIVTTTTHKTLRGARSGLIFYR 279 (490)
T ss_dssp TTS--SCCGGGTCSEEEEESSSTTCSCSCEEEEEE
T ss_pred ccc--cCCccccceEEeccccccccCCCceEEEec
Confidence 233 3344567999999999999 7899999873
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=181.31 Aligned_cols=160 Identities=14% Similarity=0.092 Sum_probs=131.5
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+...+||++|++++|.+++++++||++|+..++.+++++ ||.|++....|.+....+.......|
T Consensus 58 ~~~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~~~~~~--------------gd~vl~~~~~y~~~~~~~~~~~~~~g 123 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQK--------------GDHLIAGDTLYGCTVSLFTHWLPRFG 123 (389)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTTCCT--------------TCEEEEESSCCHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhCC--------------CCEEEEeCCCchHHHHHHHHHHHHcC
Confidence 5778999999999999999999999999999999877654 77788777888876665432111228
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
.+++.++..|+++|++++++ ++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+.++. . ..
T Consensus 124 ~~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~---~----~~ 193 (389)
T 3acz_A 124 IEVDLIDTSDVEKVKAAWKP---NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLK---P----LE 193 (389)
T ss_dssp CEEEEECTTCHHHHHHTCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCC---G----GG
T ss_pred CEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccC---c----cc
Confidence 89999999999999998864 78999999999999999999999999999999999999999775421 1 11
Q ss_pred CCCCccEEEecCcccccCC----ccEEeeC
Q 019931 309 CERDVDICVGTLSKAAGCQ----GGFIACR 334 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~~----GG~i~~~ 334 (334)
.++||++.|++|++|+. ||+++++
T Consensus 194 --~~~di~~~S~sK~~~~~~~~~~G~v~~~ 221 (389)
T 3acz_A 194 --LGADIALHSVSKYINGHGDVIGGVSSAK 221 (389)
T ss_dssp --TTCSEEEEETTTTTTCSSCCCCEEEEES
T ss_pred --cCCeEEEECChhhccCCCCceeEEEEEC
Confidence 35689999999999864 6888764
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-20 Score=177.44 Aligned_cols=202 Identities=17% Similarity=0.155 Sum_probs=147.0
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC----CcEEEeccHHHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK----EDCLLCPTGFAANMAVI 182 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~----e~alv~~sG~~An~~ai 182 (334)
++.+++|+++++ .+..+|.+++++.+. ..+...+....|...+.+++.+.+.+..|. ++++++++|++|+..++
T Consensus 30 ~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~ 108 (385)
T 1b5p_A 30 GVDLVALTAGEP-DFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLF 108 (385)
T ss_dssp TCCCEECCCSSC-SSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHH
T ss_pred CCCEEEecCCCC-CCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHH
Confidence 367899999875 666688998876553 222223333345555555555555544452 56888899999999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCCcEE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMRKKV 255 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~~~l 255 (334)
.+++++ ||.|++..+.|..+...++.. |.+++.++.+ |+++|++++++ ++++
T Consensus 109 ~~l~~~--------------gd~Vlv~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~ 167 (385)
T 1b5p_A 109 QAILDP--------------GDEVIVLSPYWVSYPEMVRFA----GGVVVEVETLPEEGFVPDPERVRRAITP---RTKA 167 (385)
T ss_dssp HHHCCT--------------TCEEEEEESCCTHHHHHHHHT----TCEEEEEECCGGGTTCCCHHHHHTTCCT---TEEE
T ss_pred HHhcCC--------------CCEEEEcCCCchhHHHHHHHc----CCEEEEeecCcccCCCCCHHHHHHhcCC---CCEE
Confidence 988764 788888888888887777766 8888888752 67778777753 6888
Q ss_pred EEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---c
Q 019931 256 VVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---G 329 (334)
Q Consensus 256 Vv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G 329 (334)
|++.+++||+|.+.| +++|.++|++||++||+||+|+...++. .......+.++.+|+++||||+||..| |
T Consensus 168 v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG 244 (385)
T 1b5p_A 168 LVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG---EHFSPGRVAPEHTLTVNGAAKAFAMTGWRIG 244 (385)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS---CCCCGGGTCTTTEEEEEESTTTTTCGGGCCE
T ss_pred EEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC---CCCCHHHcCCCCEEEEEechhhcCCcccceE
Confidence 888899999999876 8899999999999999999999765532 111111222255799999999998766 8
Q ss_pred EEeeC
Q 019931 330 FIACR 334 (334)
Q Consensus 330 ~i~~~ 334 (334)
|++++
T Consensus 245 ~~~~~ 249 (385)
T 1b5p_A 245 YACGP 249 (385)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 88764
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.6e-21 Score=179.26 Aligned_cols=191 Identities=15% Similarity=0.112 Sum_probs=144.7
Q ss_pred EEEeecCccCCCCCCHHHHHHHHHhc---CC--CCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHH
Q 019931 111 LLLFSGNDYLGLSSHPTIAKAAARHG---MG--PRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIV 183 (334)
Q Consensus 111 ~l~f~sn~yLgl~~~p~v~~a~~~~g---~g--~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~ 183 (334)
|+|++++. ..+|.+++++.++- .+ ...++...+..+..+++++++++++|.+ .++++++|++|+..++.
T Consensus 3 yld~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~ 78 (382)
T 4hvk_A 3 YFDYTSAK----PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAII 78 (382)
T ss_dssp BCBTTTCC----CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHH
T ss_pred eecCCCcC----CCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHH
Confidence 45555542 35788998776532 11 1122333344677889999999999975 47778999999999999
Q ss_pred HHh----hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcE
Q 019931 184 AVG----NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 184 al~----~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~ 254 (334)
++. ++ ||.|+++...|.++...+.... ..|++++.++.+ |+++|++++++ +++
T Consensus 79 ~~~~~~~~~--------------gd~vi~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~ 140 (382)
T 4hvk_A 79 GYAMRNARK--------------GKHILVSAVEHMSVINPAKFLQ-KQGFEVEYIPVGKYGEVDVSFIDQKLRD---DTI 140 (382)
T ss_dssp HHHHHHGGG--------------CCEEEEETTCCHHHHHHHHHHH-HTTCEEEEECBCTTSCBCHHHHHHHCCT---TEE
T ss_pred HhhhhhcCC--------------CCEEEECCCCcHHHHHHHHHHH-hcCCEEEEeccCCCCCcCHHHHHHHhcc---Cce
Confidence 887 44 7889999999999887766542 227888888764 89999998864 789
Q ss_pred EEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCc-cEEe
Q 019931 255 VVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQG-GFIA 332 (334)
Q Consensus 255 lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~G-G~i~ 332 (334)
+|++++++|++|.+.|+++|.++|++||+ +|+|++|+.|... +++. .++|+++.|+||.+|+.| |+++
T Consensus 141 ~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~g~g~~~ 210 (382)
T 4hvk_A 141 LVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIE---------VDVEKIGADMLTISSNDIYGPKGVGALW 210 (382)
T ss_dssp EEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBC---------CCHHHHTCSEEEEESGGGTSCTTCEEEE
T ss_pred EEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCC---------CCchhcCCCEEEEeHHHhcCCCceEEEE
Confidence 99999999999999999999999999999 9999999876431 1111 246899999999888764 5554
Q ss_pred e
Q 019931 333 C 333 (334)
Q Consensus 333 ~ 333 (334)
+
T Consensus 211 ~ 211 (382)
T 4hvk_A 211 I 211 (382)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=182.02 Aligned_cols=200 Identities=16% Similarity=0.091 Sum_probs=145.7
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhcCCC--CccccccCchHHHHHHHHHHHhHh----CC-----CcEEEeccHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHGMGP--RGSALICGYTNYHRLLESCLADLK----KK-----EDCLLCPTGFA 176 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~--~~sr~~~G~~~~~~~LE~~La~~~----g~-----e~alv~~sG~~ 176 (334)
|+++|||+++++ .+..+|.+++++.+.-... .++....| ..+|++++++++ |. +.++++++|++
T Consensus 46 g~~~idl~~g~~-~~~~~~~v~~a~~~~~~~~~~~~y~~~~g----~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~ 120 (404)
T 2o1b_A 46 PLPLINMAVGIP-DGPTPQGIIDHFQKALTIPENQKYGAFHG----KEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKN 120 (404)
T ss_dssp SSCCEECCCCSC-SSCCCHHHHHHHHHHTTCHHHHSCCCTTC----CHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHH
T ss_pred CCCEEecCCcCC-CCCCCHHHHHHHHHHHhCCCCCCCCCCCC----CHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHH
Confidence 578999999875 5667899999887653211 11111123 355666666665 74 36778888899
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC------CCHHHHHHHHhcCC
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH------CDMSHLKTLLSCCT 250 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~------~D~~~Le~~l~~~~ 250 (334)
|+..++.+++++ ||.|++..+.|.+....++.. +.+++.++. .|+++|+++++.
T Consensus 121 al~~~~~~l~~~--------------gd~Vl~~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~d~~~l~~~l~~-- 180 (404)
T 2o1b_A 121 GLVAVPTCVINP--------------GDYVLLPDPGYTDYLAGVLLA----DGKPVPLNLEPPHYLPDWSKVDSQIID-- 180 (404)
T ss_dssp HHHHHHHHHCCT--------------TCEEEEEESCCSSHHHHHHHT----TCEEEEEECCTTTCCCCGGGSCHHHHH--
T ss_pred HHHHHHHHhcCC--------------CCEEEEcCCCchhHHHHHHHC----CCEEEEeccCcccCcCCHHHHHHhhcc--
Confidence 999999988754 777888888888888777766 788888775 378899988864
Q ss_pred CCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCC
Q 019931 251 MRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQ 327 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~ 327 (334)
++++|++++++||+|.+.| +++|+++|++||++||+||+|+.+.++.....+....+ ..+.+|+++||||+||+.
T Consensus 181 -~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~~i~~~s~sK~~g~~ 258 (404)
T 2o1b_A 181 -KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASEN-GKDVAIEIYSLSKGYNMS 258 (404)
T ss_dssp -HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTT-HHHHEEEEEESTTTTTCG
T ss_pred -CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCC-CCCCEEEEEecchhccCc
Confidence 6788888899999999886 78899999999999999999997655321111211110 124579999999999866
Q ss_pred c---cEEeeC
Q 019931 328 G---GFIACR 334 (334)
Q Consensus 328 G---G~i~~~ 334 (334)
| ||++++
T Consensus 259 G~r~G~~~~~ 268 (404)
T 2o1b_A 259 GFRVGFAVGN 268 (404)
T ss_dssp GGCCEEEEEC
T ss_pred hhheEeEecC
Confidence 6 888764
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.8e-21 Score=181.54 Aligned_cols=194 Identities=14% Similarity=0.105 Sum_probs=145.7
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHh-----cCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARH-----GMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMA 180 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~-----g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ 180 (334)
+.-|+|+.++. ..+|.+++++.++ +.....+....+..+..+++++++++++|.+ .++++++|++|+..
T Consensus 20 ~~iyld~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~ 95 (400)
T 3vax_A 20 HMTYLDAAATT----RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNI 95 (400)
T ss_dssp --CCCCCCCCS----SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHH
T ss_pred CcEEecCCCCC----CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHH
Confidence 35677777764 3589998876543 2221112222233466789999999999975 68888999999999
Q ss_pred HHHHHh----hhhhhccCCCccCCCCCe-EEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCC
Q 019931 181 VIVAVG----NIASLLAGDEKSFKDEKI-AIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCT 250 (334)
Q Consensus 181 ai~al~----~~~~~~~~~~~~~~~~gd-~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~ 250 (334)
++.++. ++ || .|+++...|.++...+.... ..|++++.++.+ |+++|++++++
T Consensus 96 ~~~~l~~~~~~~--------------gd~~Vl~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~d~~~l~~~i~~-- 158 (400)
T 3vax_A 96 ALLGLAPYGERT--------------GRRHIITSAIEHKAVLEPLEHLA-GRGFEVDFLTPGPSGRISVEGVMERLRP-- 158 (400)
T ss_dssp HHHTTHHHHHHH--------------TCCEEEEETTSCHHHHHHHHHHH-TTTCEEEEECCCTTCCCCHHHHHTTCCT--
T ss_pred HHHHHHHhhccC--------------CCCEEEECccccHhHHHHHHHHH-hcCCeEEEEccCCCCCcCHHHHHHhcCC--
Confidence 999876 44 78 89988899998877766542 237888888764 88888888764
Q ss_pred CCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc-c
Q 019931 251 MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG-G 329 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G-G 329 (334)
++++|++++++||+|.+.|+++|.++|++||++||+|++|+.+.... .+ .. . +|+++.|++|.+|+.| |
T Consensus 159 -~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~---~~---~~--~-~d~~~~s~~K~~g~~g~g 228 (400)
T 3vax_A 159 -DTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPG---DL---TT--P-IDMISISGHKIGAPKGVG 228 (400)
T ss_dssp -TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGG---GG---GS--C-CSEEEEETGGGTSCSSCE
T ss_pred -CceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCc---Ch---hh--c-CcEEEEeHHHhCCCCceE
Confidence 78999999999999999999999999999999999999999764311 11 11 1 6899999999888754 5
Q ss_pred EEe
Q 019931 330 FIA 332 (334)
Q Consensus 330 ~i~ 332 (334)
+++
T Consensus 229 ~~~ 231 (400)
T 3vax_A 229 ALV 231 (400)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.7e-21 Score=181.03 Aligned_cols=201 Identities=15% Similarity=0.068 Sum_probs=147.5
Q ss_pred cceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHH
Q 019931 107 QFKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVA 184 (334)
Q Consensus 107 ~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~a 184 (334)
+|+.+|||++|++ .+..+|.|++++.+.-...+.....++. +...+|++++++++|. +.++++++|++|+..++.+
T Consensus 24 ~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~-~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~ 101 (360)
T 3hdo_A 24 DIASWIKLNTNEN-PYPPSPEVVKAILEELGPDGAALRIYPS-ASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRA 101 (360)
T ss_dssp CCTTSEECSSCCC-SSCCCHHHHHHHHHHHTTTCGGGGSCCC-SSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHH
T ss_pred cccceeeccCCCC-CCCCCHHHHHHHHHHHhcccchhhcCCC-CchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHH
Confidence 3478999999985 6788999999887643221000011111 2237899999999994 6789999999999999998
Q ss_pred HhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCC
Q 019931 185 VGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSM 264 (334)
Q Consensus 185 l~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~ 264 (334)
++++ ||.|++..+.|.+....++.. |.+++.++.++--.++++++.. ++++|++++++||
T Consensus 102 l~~~--------------gd~Vl~~~p~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~l~~~~--~~~~v~i~~p~np 161 (360)
T 3hdo_A 102 FAAE--------------GEEIGYVHPSYSYYGTLAEVQ----GARVRTFGLTGDFRIAGFPERY--EGKVFFLTTPNAP 161 (360)
T ss_dssp HCCT--------------TCEEEEESSSCTHHHHHHHHH----TCEEEEECBCTTSSBTTCCSSB--CSSEEEEESSCTT
T ss_pred HhCC--------------CCEEEEcCCChHHHHHHHHHC----CCEEEEeeCCCCCCHHHHHhhc--CCCEEEEeCCCCC
Confidence 8764 788888888888888887776 8899888875322233333322 3568889999999
Q ss_pred CCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 265 DGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 265 ~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
+|.+.|+++|.++|+++|++||+||+|+.. .+ .+.....+ ..+.+++++||||++|+.| ||++++
T Consensus 162 tG~~~~~~~l~~l~~~~~~~li~De~~~~~-~~---~~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 229 (360)
T 3hdo_A 162 LGPSFPLEYIDELARRCAGMLVLDETYAEF-AE---SNALELVR-RHENVVVTRTLSKSYSLAGMRIGLAIAR 229 (360)
T ss_dssp TCCCCCHHHHHHHHHHBSSEEEEECTTGGG-SS---CCCTHHHH-HCSSEEEEEESTTTTSCTTSCCEEEECC
T ss_pred CCCCcCHHHHHHHHHHCCCEEEEECChHhh-CC---cchhHHhc-cCCCEEEEecchHhhcCCccceeeEeeC
Confidence 999999999999999999999999999852 22 22221111 1244688999999998766 888763
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9e-21 Score=180.23 Aligned_cols=192 Identities=16% Similarity=0.117 Sum_probs=144.3
Q ss_pred EEEeecCccCCCCCCHHHHHHHHHhcC---CCCc--cccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHH
Q 019931 111 LLLFSGNDYLGLSSHPTIAKAAARHGM---GPRG--SALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIV 183 (334)
Q Consensus 111 ~l~f~sn~yLgl~~~p~v~~a~~~~g~---g~~~--sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~ 183 (334)
|+|++++. ..+|.|++++.++-. +... +....+..+...++++++++++|.+ .++++++|++|+..++.
T Consensus 3 yld~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~ 78 (382)
T 4eb5_A 3 YFDYTSAK----PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAII 78 (382)
T ss_dssp BCBTTTCC----CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHH
T ss_pred eeccCCCC----CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHH
Confidence 56666653 468999998765422 2111 1111223467899999999999975 57777999999999999
Q ss_pred HHh----hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcE
Q 019931 184 AVG----NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 184 al~----~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~ 254 (334)
++. ++ ||.|+++...|.++...+..... .|++++.++. .|+++|++++++ +++
T Consensus 79 ~l~~~~~~~--------------gd~Vl~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~i~~---~~~ 140 (382)
T 4eb5_A 79 GYAMRNARK--------------GKHILVSAVEHMSVINPAKFLQK-QGFEVEYIPVGKYGEVDVSFIDQKLRD---DTI 140 (382)
T ss_dssp HHHHHHGGG--------------CCEEEEETTCCHHHHHHHHHHTT-TTCEEEEECBCTTSCBCHHHHHHHCCT---TEE
T ss_pred HHHhhccCC--------------CCEEEECCCcchHHHHHHHHHHh-CCcEEEEeccCCCCccCHHHHHHHhcC---CCe
Confidence 887 43 78899999999988777765321 2788888875 388999988864 689
Q ss_pred EEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc-cEEee
Q 019931 255 VVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG-GFIAC 333 (334)
Q Consensus 255 lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G-G~i~~ 333 (334)
+|++++++||+|.+.|+++|.++|++||++ |+|++|++|... ..+ .. .++|++++|+||.+|..| |++++
T Consensus 141 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~---~~~-~~----~~~di~~~s~sK~~g~~g~G~~~~ 211 (382)
T 4eb5_A 141 LVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIE---VDV-EK----IGADMLTISSNDIYGPKGVGALWI 211 (382)
T ss_dssp EEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBC---CCH-HH----HTCSEEEEETGGGTCCSSCEEEEE
T ss_pred EEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcc---cCc-cc----cCCCEEEeehHHhcCCCceEEEEE
Confidence 999999999999999999999999999999 999999964221 111 11 146899999999988765 66654
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=180.89 Aligned_cols=184 Identities=17% Similarity=0.139 Sum_probs=138.7
Q ss_pred CCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccC
Q 019931 120 LGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSF 199 (334)
Q Consensus 120 Lgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~ 199 (334)
+++...+.+++++.+ ..+ +.+.....+.++++|+++++++|.+++++++||++|+..++.+++++
T Consensus 30 ~~~~~~~~~~~~~~~-~~~---~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~al~~l~~~----------- 94 (412)
T 2cb1_A 30 YGFKTLEEGQERFAT-GEG---YVYARQKDPTAKALEERLKALEGALEAVVLASGQAATFAALLALLRP----------- 94 (412)
T ss_dssp CCCSSHHHHHHHHHH-CCS---CSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCCT-----------
T ss_pred eecCChHHHHHHhcc-ccC---cCcCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCC-----------
Confidence 567655556555542 111 11222234778999999999999999999999999999999887653
Q ss_pred CCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHH
Q 019931 200 KDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRR 279 (334)
Q Consensus 200 ~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~ 279 (334)
+|.|++....|.++...+.......+.+++.++. |+++|++++++ ++++|++++++|++|.+.|+++|.++|+
T Consensus 95 ---gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~l~~~i~~---~~~~v~~~~~~n~~G~~~~l~~i~~l~~ 167 (412)
T 2cb1_A 95 ---GDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEAVREALSA---KTRAVFVETVANPALLVPDLEALATLAE 167 (412)
T ss_dssp ---TCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECS-SHHHHHHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred ---CCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-CHHHHHHHhcc---CCeEEEEeCCCCCCcccccHHHHHHHHH
Confidence 7888888888988776654311223788888876 48899988864 7899999999999999999999999999
Q ss_pred HcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC----CccEEee
Q 019931 280 KYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 280 k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+||+++|+|++|+.+.+. .. ....++|+++.|++|.+++ .||++++
T Consensus 168 ~~~~~li~D~~~~~~~~~--~~------~~~~~~di~~~S~~K~~~~~~~~~G~~~~~ 217 (412)
T 2cb1_A 168 EAGVALVVDNTFGAAGAL--CR------PLAWGAHVVVESLTKWASGHGSVLGGAVLS 217 (412)
T ss_dssp HHTCEEEEECGGGTTTTS--CC------GGGGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred HcCCEEEEECCCcccccc--CC------ccccCCeEEEECCcccccCCCCcEEEEEEe
Confidence 999999999999875110 11 1123578999999999975 4666654
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=184.78 Aligned_cols=203 Identities=12% Similarity=0.096 Sum_probs=146.4
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhcCC--CCccccccCchHHHHHHHHHHHhHhCC----CcEEEeccHHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHGMG--PRGSALICGYTNYHRLLESCLADLKKK----EDCLLCPTGFAANMAV 181 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g--~~~sr~~~G~~~~~~~LE~~La~~~g~----e~alv~~sG~~An~~a 181 (334)
++++|||+.+. ..+..+|.+++++.+.-.. ...+....|..++.+++.+.+.+++|. +.++++++|++|+..+
T Consensus 56 ~~~~i~l~~g~-~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~ 134 (447)
T 3b46_A 56 GRELINLGQGF-FSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSC 134 (447)
T ss_dssp TSCCEECCCCS-CSSCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHH
T ss_pred CCCeEEccCCC-CCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHH
Confidence 47899998885 4777899999988765332 222323334444444454544444453 4688889999999999
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----------------CCHHHHHH
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----------------CDMSHLKT 244 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----------------~D~~~Le~ 244 (334)
+.+++.+ ||.|++..+.|..+...++.. |.+++.++. .|+++|++
T Consensus 135 ~~~l~~~--------------gd~Vlv~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~ 196 (447)
T 3b46_A 135 LMGLLNA--------------GDEVIVFEPFFDQYIPNIELC----GGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEK 196 (447)
T ss_dssp HHHHCCT--------------TCEEEEEESCCTTHHHHHHHT----TCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHT
T ss_pred HHHHcCC--------------CCEEEEeCCCchhHHHHHHHc----CCEEEEEeCCCccccccccccccCcccCHHHHHH
Confidence 9988764 777887778888888777766 777776652 37788887
Q ss_pred HHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccc-cCCCCCccEEEecC
Q 019931 245 LLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQ-FNCERDVDICVGTL 320 (334)
Q Consensus 245 ~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~-~~~~~~~Div~~Sl 320 (334)
+++ +++++|++++++||+|.+.+ +++|+++|++||++||+||+|+...++.....+... .+ ..+.|++++||
T Consensus 197 ~l~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~~i~i~S~ 272 (447)
T 3b46_A 197 AIT---SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPE-IGQLTLTVGSA 272 (447)
T ss_dssp TCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHH-HHTTEEEEEEH
T ss_pred hhc---cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCC-CCCcEEEEecC
Confidence 775 37899999999999998864 889999999999999999999976554211122111 01 13568999999
Q ss_pred cccccCCc---cEEee
Q 019931 321 SKAAGCQG---GFIAC 333 (334)
Q Consensus 321 sKa~G~~G---G~i~~ 333 (334)
||+||+.| ||+++
T Consensus 273 sK~~~~~G~riG~~~~ 288 (447)
T 3b46_A 273 GKSFAATGWRIGWVLS 288 (447)
T ss_dssp HHHTTCTTSCCEEEEC
T ss_pred chhcCCcchhhEEEEe
Confidence 99999777 88876
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-21 Score=183.19 Aligned_cols=192 Identities=18% Similarity=0.194 Sum_probs=143.5
Q ss_pred eEEEeecCccCCCCCCH--HHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhC---CCcEEEeccHHHHHHHHHHH
Q 019931 110 RLLLFSGNDYLGLSSHP--TIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKK---KEDCLLCPTGFAANMAVIVA 184 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p--~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g---~e~alv~~sG~~An~~ai~a 184 (334)
.+.+|+.++++++..++ ++.+++.+ +... ++......+|+++++++++ .++++++++|++|+..++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~ 100 (375)
T 3op7_A 28 SISSLTLEELFALSGTNPEDFYKKLQG---TKLN----YGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYS 100 (375)
T ss_dssp SCCCCCHHHHHHHHTCCHHHHHHHHHT---SCCS----SCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHH
T ss_pred CCCCccHHHHHhhcccchHHHHHHHhc---CCcC----CCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHH
Confidence 34467777777777654 44444433 2211 2222234789999999863 36799999999999999998
Q ss_pred HhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCCcEEEE
Q 019931 185 VGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMRKKVVV 257 (334)
Q Consensus 185 l~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~~~lVv 257 (334)
++++ ||.|++..+.|.++...++.. |++++.++.+ |+++|++++++ ++++|+
T Consensus 101 l~~~--------------gd~Vl~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~v~ 159 (375)
T 3op7_A 101 LIEP--------------GDHVISLYPTYQQLYDIPKSL----GAEVDLWQIEEENGWLPDLEKLRQLIRP---TTKMIC 159 (375)
T ss_dssp HCCT--------------TCEEEEEESSCTHHHHHHHHT----TCEEEEEEEEGGGTTEECHHHHHHHCCT---TCCEEE
T ss_pred hcCC--------------CCEEEEeCCCchhHHHHHHHc----CCEEEEEeccccCCCCCCHHHHHHhhcc---CCeEEE
Confidence 8764 788888888888888777766 7888877753 88999998864 788999
Q ss_pred EcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEE
Q 019931 258 TDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFI 331 (334)
Q Consensus 258 ~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i 331 (334)
+++++||+|.+.| +++|+++|++||++||+||+|+.+.++ +.... ... .+.+++++||||++|..| |++
T Consensus 160 ~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~--~~~~~--~~~-~~~~i~~~s~sK~~~~~G~r~G~v 234 (375)
T 3op7_A 160 INNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSEL--DVPSI--IEV-YDKGIAVNSLSKTYSLPGIRIGWV 234 (375)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSS--CCCCH--HHH-CTTEEEEEESSSSSSCGGGCCEEE
T ss_pred EcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccc--CCCch--hhh-cCCEEEEeEChhhcCCcccceEEE
Confidence 9999999999999 999999999999999999999975443 11111 111 234688999999998655 888
Q ss_pred eeC
Q 019931 332 ACR 334 (334)
Q Consensus 332 ~~~ 334 (334)
+++
T Consensus 235 ~~~ 237 (375)
T 3op7_A 235 AAN 237 (375)
T ss_dssp ECC
T ss_pred EeC
Confidence 763
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=178.54 Aligned_cols=205 Identities=16% Similarity=0.124 Sum_probs=143.4
Q ss_pred cccceeEEEeecCcc-CCCC-CCHHHHHHHHHhcC--CCCccccccCchHHHHHHHHHHHhHhCC-CcEEEeccHHHHHH
Q 019931 105 ARQFKRLLLFSGNDY-LGLS-SHPTIAKAAARHGM--GPRGSALICGYTNYHRLLESCLADLKKK-EDCLLCPTGFAANM 179 (334)
Q Consensus 105 ~~~g~~~l~f~sn~y-Lgl~-~~p~v~~a~~~~g~--g~~~sr~~~G~~~~~~~LE~~La~~~g~-e~alv~~sG~~An~ 179 (334)
+.+|+.|+||+++.+ ..+. .+|.+++++.+.-. +..... + ..+...+|+++|++++|. ++++++++|++|+.
T Consensus 24 ~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~-y--~~~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~ 100 (375)
T 2eh6_A 24 DEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNL-Y--ENPWQEELAHKLVKHFWTEGKVFFANSGTESVE 100 (375)
T ss_dssp ETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTT-B--CCHHHHHHHHHHHHTSSSCEEEEEESSHHHHHH
T ss_pred eCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcc-c--CCHHHHHHHHHHHhhcCCCCeEEEeCchHHHHH
Confidence 355699999999865 4666 68999997765321 111111 1 135678999999999998 78889999999999
Q ss_pred HHHHHH---h---hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc---CCc-----EEEEeeCCCHHHHHHH
Q 019931 180 AVIVAV---G---NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT---KMV-----EVFVYKHCDMSHLKTL 245 (334)
Q Consensus 180 ~ai~al---~---~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~---~g~-----~v~~~~~~D~~~Le~~ 245 (334)
.++.++ . ++ +++.+|+.+..+|........+.... .+. .+..+++.|+++|+++
T Consensus 101 ~~~~~~~~~~~~~~~------------g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 168 (375)
T 2eh6_A 101 AAIKLARKYWRDKGK------------NKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKL 168 (375)
T ss_dssp HHHHHHHHHHHHTTC------------CCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHHHTT
T ss_pred HHHHHHHHHhccCCC------------CCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCchHHHHHHH
Confidence 999753 2 22 11344555566677665554433110 011 2667777899999988
Q ss_pred HhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEecC
Q 019931 246 LSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVGTL 320 (334)
Q Consensus 246 l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~Sl 320 (334)
+++ ++++|++++++|++|.+.| +++|.++|++||++||+||+|+ + +|..+.++ ...++.. .|++ ||
T Consensus 169 l~~---~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~-~-~~~~~~~~~~~~~~~~--~d~~--s~ 239 (375)
T 2eh6_A 169 LDE---ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQT-G-IGRTGEFYAYQHFNLK--PDVI--AL 239 (375)
T ss_dssp CCT---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSGGGGGTCC--CSEE--EE
T ss_pred hcC---CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEecccc-C-CCCCCcchhhhhcCCC--CCEE--EE
Confidence 863 7899999999999999988 9999999999999999999999 3 45444433 2334432 4665 88
Q ss_pred cccccC-C-ccEEee
Q 019931 321 SKAAGC-Q-GGFIAC 333 (334)
Q Consensus 321 sKa~G~-~-GG~i~~ 333 (334)
||.+++ . .|++++
T Consensus 240 SK~~~~g~~~G~~~~ 254 (375)
T 2eh6_A 240 AKGLGGGVPIGAILA 254 (375)
T ss_dssp CGGGGTTSCCEEEEE
T ss_pred cccccCCCCeEEEEE
Confidence 899985 1 266654
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=177.70 Aligned_cols=185 Identities=12% Similarity=0.046 Sum_probs=139.1
Q ss_pred CCHHHHHHHHHhcCCCC------ccccccCchHHHHHHHHH-HHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCC
Q 019931 124 SHPTIAKAAARHGMGPR------GSALICGYTNYHRLLESC-LADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDE 196 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~------~sr~~~G~~~~~~~LE~~-La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~ 196 (334)
.+|.+++++.++..... .++...+..+...+++++ +++++|.+.++++++|++|+..++.++.++
T Consensus 21 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~~v~~~~g~t~a~~~~~~~~~~~-------- 92 (371)
T 2e7j_A 21 LTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKK-------- 92 (371)
T ss_dssp CCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCT--------
T ss_pred CCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHhCC--------
Confidence 58999998887654321 223334445667899999 999999885555577799999999988654
Q ss_pred ccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEee--CC-----CHHHHHHHHhcCC--CCcEEEEEcCCCCCCCC
Q 019931 197 KSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYK--HC-----DMSHLKTLLSCCT--MRKKVVVTDSLFSMDGD 267 (334)
Q Consensus 197 ~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~--~~-----D~~~Le~~l~~~~--~~~~lVv~e~v~n~~G~ 267 (334)
+|.|++..+.|.+....++.. |.+++.++ .+ |+++|++++++.. +++++|++++++|++|.
T Consensus 93 ------gd~vl~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~ 162 (371)
T 2e7j_A 93 ------DAWVVMDENCHYSSYVAAERA----GLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGN 162 (371)
T ss_dssp ------TCEEEEETTCCHHHHHHHHHT----TCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCC
T ss_pred ------CCEEEEccCcchHHHHHHHHc----CCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcc
Confidence 788999999999888887766 88888888 65 8999999997421 26889999999999999
Q ss_pred ccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC--CccEEeeC
Q 019931 268 FAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC--QGGFIACR 334 (334)
Q Consensus 268 ~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~--~GG~i~~~ 334 (334)
+.|+++|.++|++||++||+|++|+.|..+. .. ..+ ++|++++|+||++++ .+|+++++
T Consensus 163 ~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~---~~-~~~----~~di~~~s~sK~~~~~~~~G~~~~~ 223 (371)
T 2e7j_A 163 LPDVKKIAKVCSEYDVPLLVNGAYAIGRMPV---SL-KEI----GADFIVGSGHKSMAASGPIGVMGMK 223 (371)
T ss_dssp CCCHHHHHHHHHTTTCCEEEECTTTBTTBCC---CH-HHH----TCSEEEEEHHHHSSCCSSCEEEEEC
T ss_pred cCCHHHHHHHHHHcCCeEEEECccccCCCCC---Ch-hhc----CCCEEEecCCcCCCCCCCcEEEEEe
Confidence 9999999999999999999999999865421 11 111 357999999999865 23888764
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-20 Score=184.09 Aligned_cols=205 Identities=12% Similarity=0.122 Sum_probs=144.6
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC---CCcEEEeccHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK---KEDCLLCPTGF 175 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g---~e~alv~~sG~ 175 (334)
.+|.+|++||||.++ ..||. +||+|++|+++. ......+. ....++...+|.++|+++.. .+.+++++||+
T Consensus 58 l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~~~~-~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGs 135 (456)
T 4atq_A 58 IRDVDGNSFIDLGSGIAVTSVGA-SDPAVVAAVQEAAAHFTHTCF-MVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGA 135 (456)
T ss_dssp EEETTSCEEEESSHHHHTCTTCT-TCHHHHHHHHHHHHHCSCCTT-TTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHH
T ss_pred EEeCCCCEEEEccccHHHHhcCC-CCHHHHHHHHHHHhhccCccc-CccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChH
Confidence 467889999999774 45777 599999987543 22222211 22234666789999999985 34678889999
Q ss_pred HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC---------CcEEEEeeC----------
Q 019931 176 AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK---------MVEVFVYKH---------- 236 (334)
Q Consensus 176 ~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~---------g~~v~~~~~---------- 236 (334)
+||+.+++.... .+++..+|..+..+|+.....+.+..... ...+..++.
T Consensus 136 EA~e~AlklAr~-----------~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~ 204 (456)
T 4atq_A 136 EAVENAVKVARL-----------ATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPE 204 (456)
T ss_dssp HHHHHHHHHHHH-----------HHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTT
T ss_pred HHHHHHHHHHhh-----------hhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCc
Confidence 999999996443 23457788889999998766555442110 112333332
Q ss_pred -CCHHHHHHHHhc----C-CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-c
Q 019931 237 -CDMSHLKTLLSC----C-TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-E 305 (334)
Q Consensus 237 -~D~~~Le~~l~~----~-~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~ 305 (334)
++.+.+++.++. . ..+...|++|++.+..|.+.| |++|+++|++||++||+||+++. +|++|.+++ +
T Consensus 205 ~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG--~GRtG~~~a~e 282 (456)
T 4atq_A 205 ITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSG--FCRTGEWFAVD 282 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSSSGGG
T ss_pred ccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccc--cCCcccccccc
Confidence 133444433321 1 235789999999999898766 99999999999999999999984 789998774 7
Q ss_pred ccCCCCCccEEEecCcccccC
Q 019931 306 QFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 306 ~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++.| ||+ ||+|++|.
T Consensus 283 ~~gv~P--Div--t~gK~lgg 299 (456)
T 4atq_A 283 HEGVVP--DII--TMAKGIAG 299 (456)
T ss_dssp GTTCCC--SEE--EECGGGGT
T ss_pred ccCCCC--chh--hhhhcccC
Confidence 899988 555 89999974
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=180.55 Aligned_cols=200 Identities=15% Similarity=0.140 Sum_probs=144.6
Q ss_pred eeEEEeecCc---cCCCCCCHHHHHHHHHhc-CCC-CccccccCchHHHHHHHHHHHhHhC--------------CCcEE
Q 019931 109 KRLLLFSGND---YLGLSSHPTIAKAAARHG-MGP-RGSALICGYTNYHRLLESCLADLKK--------------KEDCL 169 (334)
Q Consensus 109 ~~~l~f~sn~---yLgl~~~p~v~~a~~~~g-~g~-~~sr~~~G~~~~~~~LE~~La~~~g--------------~e~al 169 (334)
+++++|++++ |..+..+|.+++++.+.- .+. ..+ +......+++++++++++ .++++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y----~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~ 108 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGY----FPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVV 108 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSC----CCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEE
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCc----CCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEE
Confidence 5689999887 357888999999876542 221 111 111223567777777766 35788
Q ss_pred EeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHH
Q 019931 170 LCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHL 242 (334)
Q Consensus 170 v~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~L 242 (334)
++++|++|+..++.+++++ ||.|++..+.|.++...++.. |++++.++. .|+++|
T Consensus 109 ~~~g~~~al~~~~~~l~~~--------------gd~vl~~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l 170 (416)
T 1bw0_A 109 LCSGGSHGILMAITAICDA--------------GDYALVPQPGFPHYETVCKAY----GIGMHFYNCRPENDWEADLDEI 170 (416)
T ss_dssp EESHHHHHHHHHHHHHCCT--------------TCEEEEEESCCTHHHHHHHHT----TCEEEEEEEEGGGTTEECHHHH
T ss_pred EeCChHHHHHHHHHHhCCC--------------CCEEEEcCCCcHhHHHHHHHc----CcEEEEeecCcccCCCCCHHHH
Confidence 8899999999999988754 778888878888777777665 788877763 378889
Q ss_pred HHHHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCc--ccccccCCCC-CccEE
Q 019931 243 KTLLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGG--GVAEQFNCER-DVDIC 316 (334)
Q Consensus 243 e~~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~--g~~~~~~~~~-~~Div 316 (334)
++++++ ++++|++.+++||+|.+.| +++|+++|++||++||+||+|+...++.... .......+.. ..+|+
T Consensus 171 ~~~l~~---~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~ 247 (416)
T 1bw0_A 171 RRLKDD---KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVI 247 (416)
T ss_dssp HHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEE
T ss_pred HHHhcc---CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEE
Confidence 888864 6788888889999999998 9999999999999999999999755432200 2211122222 23588
Q ss_pred EecCcccccCCc---cEEee
Q 019931 317 VGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 317 ~~SlsKa~G~~G---G~i~~ 333 (334)
++||||+|++.| ||+++
T Consensus 248 ~~s~sK~~~~~Glr~G~~~~ 267 (416)
T 1bw0_A 248 LGGTAKNLVVPGWRLGWLLY 267 (416)
T ss_dssp EEESTTTTSCGGGCCEEEEE
T ss_pred EecchhhCCCCCceEEEEEe
Confidence 999999997655 78765
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=177.45 Aligned_cols=197 Identities=17% Similarity=0.152 Sum_probs=143.6
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNI 188 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~ 188 (334)
.++|+|++|.+.. .+|.+++++.+...+. ..++..+...+||++|++++|.+.++++++|++|+..++.++.++
T Consensus 3 ~~~i~~~~~~~~~--p~~~~~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~~~ 76 (347)
T 1jg8_A 3 HMMIDLRSDTVTK--PTEEMRKAMAQAEVGD----DVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQR 76 (347)
T ss_dssp --CEECSCGGGCC--CCHHHHHHHHTCCCCC----GGGTCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCT
T ss_pred ceEEEeccccCCC--CCHHHHHHHhcCCCCC----cccCCChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhcCC
Confidence 5678999997654 5688888887543221 134445777899999999999999999999999999999887654
Q ss_pred hhhccCCCccCCCCCeEEEEcCCCchhhHH---HHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcC---CCCcEEEE
Q 019931 189 ASLLAGDEKSFKDEKIAIFSDALNHASIID---GIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCC---TMRKKVVV 257 (334)
Q Consensus 189 ~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~---g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~---~~~~~lVv 257 (334)
||.|++..+.|.+... .+... |++++.+ .+ |+++|++++++. .+++++|+
T Consensus 77 --------------gd~Vl~~~~~~~~~~~~~~~~~~~----g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~ 137 (347)
T 1jg8_A 77 --------------GDEVILEADSHIFWYEVGAMAVLS----GVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIA 137 (347)
T ss_dssp --------------TCEEEEETTCHHHHSSTTHHHHHT----CCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEE
T ss_pred --------------CCEEEEcCcchhhhccccchhhcc----CeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEE
Confidence 7888888889876543 23334 7787777 42 889999988642 12689999
Q ss_pred EcCCCCCC-CCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC-CccEEe
Q 019931 258 TDSLFSMD-GDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC-QGGFIA 332 (334)
Q Consensus 258 ~e~v~n~~-G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~-~GG~i~ 332 (334)
+++++||+ |.+.| +++|.++|++||++|++|++|..+.++..+.... .+...+|+++.|+||++|+ .|++++
T Consensus 138 ~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~---~~~~~~d~~~~s~sK~l~~~~G~~~~ 214 (347)
T 1jg8_A 138 IENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVK---EYAGYADSVMFCLSKGLCAPVGSVVV 214 (347)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHH---HHHHTCSEEEEESSSTTCCSSCEEEE
T ss_pred EeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChH---HhcccccEEEEecccccCCCceEEEE
Confidence 99999999 98877 5688999999999999999987542221111111 1112457778899999985 565666
Q ss_pred e
Q 019931 333 C 333 (334)
Q Consensus 333 ~ 333 (334)
+
T Consensus 215 ~ 215 (347)
T 1jg8_A 215 G 215 (347)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-20 Score=176.32 Aligned_cols=160 Identities=14% Similarity=0.131 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+...+++++|+++++.++.+++++|++|+..++.++.++ +|.|++....|.+....+.......+
T Consensus 51 ~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~~~~~~~--------------g~~vl~~~~~~~~~~~~~~~~~~~~g 116 (386)
T 1cs1_A 51 NPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKP--------------GDLLVAPHDCYGGSYRLFDSLAKRGC 116 (386)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCT--------------TCEEEEETTCCHHHHHHHHHHHTTTS
T ss_pred CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCC--------------CCEEEEecCCcHhHHHHHHHHHHhcC
Confidence 4667999999999999888999999999999999987654 77788888888876665532212237
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
.+++.++.+|+++|++++++ ++++|++++++|++|.+.|+++|.++|++||++||+||+|+.+.+.. .
T Consensus 117 ~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~---~------ 184 (386)
T 1cs1_A 117 YRVLFVDQGDEQALRAALAE---KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQN---P------ 184 (386)
T ss_dssp CEEEEECTTCHHHHHHHHHT---CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC---G------
T ss_pred CEEEEeCCCCHHHHHHhhcc---CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC---c------
Confidence 88999999999999999975 68899999999999999999999999999999999999999765421 1
Q ss_pred CCCCccEEEecCcccccCC----ccEEeeC
Q 019931 309 CERDVDICVGTLSKAAGCQ----GGFIACR 334 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~~----GG~i~~~ 334 (334)
+..++|+++.|+||++|+. ||+++++
T Consensus 185 ~~~~~di~~~s~sK~~~~~~~~~~G~~~~~ 214 (386)
T 1cs1_A 185 LALGADLVLHSCTKYLNGHSDVVAGVVIAK 214 (386)
T ss_dssp GGGTCSEEEEETTTTTTCSSCCCCEEEEES
T ss_pred cccCceEEEEcCcccccCCCCceeEEEEeC
Confidence 1234689999999999753 3887763
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.8e-20 Score=173.90 Aligned_cols=198 Identities=14% Similarity=0.034 Sum_probs=142.7
Q ss_pred ccceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHH
Q 019931 106 RQFKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIV 183 (334)
Q Consensus 106 ~~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~ 183 (334)
.+|++++||++++ ..+..+|.+++++.+.-.....+ +. ....+++++++++++.+ .++++++|++|+..++.
T Consensus 21 ~~~~~~idl~~~~-~~~~~~~~v~~a~~~~~~~~~~y----~~-~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~ 94 (364)
T 1lc5_A 21 ISPDQLLDFSANI-NPLGMPVSVKRALIDNLDCIERY----PD-ADYFHLHQALARHHQVPASWILAGNGETESIFTVAS 94 (364)
T ss_dssp SCGGGSEECSSCC-CTTCCCHHHHHHHHHTGGGGGSC----CC-TTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHH
T ss_pred CCccceEEecccc-CCCCCCHHHHHHHHHHHHHhhcC----CC-CCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHH
Confidence 3458899999987 45667899999887643211111 11 22478999999999864 67888899999999998
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCC---HHHHHHHHhcCCCCcEEEEEcC
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCD---MSHLKTLLSCCTMRKKVVVTDS 260 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D---~~~Le~~l~~~~~~~~lVv~e~ 260 (334)
++ + +|.|++..+.|......++.. |.+++.++.+. ++.++++++...+++++|++.+
T Consensus 95 ~~--~--------------gd~vl~~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~ 154 (364)
T 1lc5_A 95 GL--K--------------PRRAMIVTPGFAEYGRALAQS----GCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCT 154 (364)
T ss_dssp HH--C--------------CSEEEEEESCCTHHHHHHHHT----TCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEES
T ss_pred Hc--C--------------CCeEEEeCCCcHHHHHHHHHc----CCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeC
Confidence 77 4 466777777777777777665 78888887642 1112333333324678888888
Q ss_pred CCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEe
Q 019931 261 LFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIA 332 (334)
Q Consensus 261 v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~ 332 (334)
++||+|.+.| +++|+++|++||++||+||+|+.+.++ +.......+. .+.++++.||||+||..| ||++
T Consensus 155 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~r~G~~~ 229 (364)
T 1lc5_A 155 PNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPH--ETGFIPALKD-NPHIWVLRSLTKFYAIPGLRLGYLV 229 (364)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTT--CCCSGGGCTT-CTTEEEEEESTTTTTCTTTCCEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccC--ccchhhHhcc-CCCEEEEEECchhhcCCccceEEEE
Confidence 9999999998 899999999999999999999975543 3333332222 345799999999998666 8887
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-20 Score=177.02 Aligned_cols=200 Identities=13% Similarity=0.025 Sum_probs=145.8
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC---CCCccccccC--chHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM---GPRGSALICG--YTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAV 181 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~---g~~~sr~~~G--~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~a 181 (334)
..|+|+.++. ..+|.+++++.++-. +...+.+.+| ..+...++++++++++|.+ .++++++|++++..+
T Consensus 27 ~~~ld~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~ 102 (406)
T 3cai_A 27 WVHFDAPAGM----LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLL 102 (406)
T ss_dssp CEECBGGGCC----CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHH
T ss_pred eEEEeCCCcC----CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHH
Confidence 5677777665 468999997765421 1111122221 2467799999999999975 577778889998888
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEE
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKV 255 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~l 255 (334)
+.++.+. + .+||.|++....|.+....+.......|.+++.++.+ |+++|++++++ ++++
T Consensus 103 ~~~l~~~---~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~---~~~~ 168 (406)
T 3cai_A 103 AEASSSR---A--------GLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISK---STRL 168 (406)
T ss_dssp HHHTGGG---G--------BTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCT---TEEE
T ss_pred HHHHhhc---c--------CCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCC---CceE
Confidence 8876211 0 1378888888888887666554211117888888765 89999998864 7899
Q ss_pred EEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCcc-EEeeC
Q 019931 256 VVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGG-FIACR 334 (334)
Q Consensus 256 Vv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~GG-~i~~~ 334 (334)
|++++++|++|.+.|+++|.++|+++|++||+|++|+.|.... .+ ..+ ++|+++.|++|.+|+.+| +++++
T Consensus 169 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~---~~-~~~----~~d~~~~s~~K~~g~~~G~~~~~~ 240 (406)
T 3cai_A 169 VAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLL---DI-RET----DADVVTVNAHAWGGPPIGAMVFRD 240 (406)
T ss_dssp EEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCC---CH-HHH----CCSEEEEEGGGGTSCSCEEEEESC
T ss_pred EEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCC---Cc-hhc----CCCEEEeehhhhcCCCcCeEEEEe
Confidence 9999999999999999999999999999999999998653211 11 111 368999999999987667 88753
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-21 Score=188.91 Aligned_cols=196 Identities=14% Similarity=0.180 Sum_probs=149.4
Q ss_pred eecCccCCCCCCHHHHHHHHHhcCCCCccccccCc---hHHHHHHHHHHHhHhCCCcEEE---eccHHHHHHHHHHHHhh
Q 019931 114 FSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGY---TNYHRLLESCLADLKKKEDCLL---CPTGFAANMAVIVAVGN 187 (334)
Q Consensus 114 f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~---~~~~~~LE~~La~~~g~e~alv---~~sG~~An~~ai~al~~ 187 (334)
|...+.+...++++|.+++++...+........|+ ...+++||+.+++++|.+.+++ ++||++||..++.++++
T Consensus 26 ~~~~~~~~~~n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~ 105 (431)
T 3ht4_A 26 HKRADEVIESNQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILR 105 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCC
Confidence 55566666666889999888765443222222222 2567899999999999998877 89999999999988876
Q ss_pred hhhhccCCCccCCCCCeEEEEcC-CCchhhHHHHHHh------hhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEE
Q 019931 188 IASLLAGDEKSFKDEKIAIFSDA-LNHASIIDGIRIA------ERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKV 255 (334)
Q Consensus 188 ~~~~~~~~~~~~~~~gd~Vl~d~-~~H~s~~~g~~ls------~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~l 255 (334)
+ ||.|+++. ..|.++...+.++ ....|++++.++++ |+++|++++++ ++++
T Consensus 106 ~--------------Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~---~tk~ 168 (431)
T 3ht4_A 106 P--------------GDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS---NTKM 168 (431)
T ss_dssp T--------------TCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT---TEEE
T ss_pred C--------------CCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC---CCeE
Confidence 4 78888877 8888887766431 01127889999874 99999999864 7899
Q ss_pred EEEcC----CCCCCCCccCHHHHHHHHHH--cCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc----
Q 019931 256 VVTDS----LFSMDGDFAPMVELVKLRRK--YGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG---- 325 (334)
Q Consensus 256 Vv~e~----v~n~~G~~~pL~~L~ela~k--~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G---- 325 (334)
|++++ ++++.|.+.|+++|+++|++ +|++||+|++|+.++++.. . ...++|++++||+|++|
T Consensus 169 V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~--~------~~~g~Di~~~S~sK~lgg~~~ 240 (431)
T 3ht4_A 169 IGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQE--P------CHVGADLMAGSLIKNPGGGIV 240 (431)
T ss_dssp EEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCC--G------GGTTCSEEEEETTSGGGTTTC
T ss_pred EEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCC--c------cccCCeEEEcCccccCCCCCC
Confidence 99997 77778888899999999999 9999999999998764321 1 11246899999999975
Q ss_pred CCccEEeeC
Q 019931 326 CQGGFIACR 334 (334)
Q Consensus 326 ~~GG~i~~~ 334 (334)
..||+++++
T Consensus 241 ~~GG~v~~~ 249 (431)
T 3ht4_A 241 KTGGYIVGK 249 (431)
T ss_dssp SSCEEEEEC
T ss_pred CceEEEEec
Confidence 468999874
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-21 Score=205.32 Aligned_cols=219 Identities=10% Similarity=0.007 Sum_probs=151.4
Q ss_pred hhcccce----eEEEeec---CccCCCCCCHHHHHHHHH----hcCCCCccccccCchHHHHHHHHHHHhHhC---CCcE
Q 019931 103 TFARQFK----RLLLFSG---NDYLGLSSHPTIAKAAAR----HGMGPRGSALICGYTNYHRLLESCLADLKK---KEDC 168 (334)
Q Consensus 103 ~~~~~g~----~~l~f~s---n~yLgl~~~p~v~~a~~~----~g~g~~~sr~~~G~~~~~~~LE~~La~~~g---~e~a 168 (334)
.+|.+|+ +||||+| +.++|++.||+|++|+++ ++... +....++...+|+++|+++.+ .+++
T Consensus 370 l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~----~~~~~~~~~~~Lae~L~~~~p~~~l~~v 445 (831)
T 4a0g_A 370 IYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVM----FPENVYEPALKCAELLLDGVGKGWASRV 445 (831)
T ss_dssp EEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCC----CTTEECHHHHHHHHHHHHTTTTTTCCEE
T ss_pred EEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhccccc----ccccCCHHHHHHHHHHHHhCCCCCCCEE
Confidence 4567788 9999988 477888659999997743 33211 112246778899999999987 4688
Q ss_pred EEeccHHHHHHHHHHHHhhhhhhccCCCc-----cCCCCCeEEEEcCCCchhhHHHHHHhhhc---C--------CcE--
Q 019931 169 LLCPTGFAANMAVIVAVGNIASLLAGDEK-----SFKDEKIAIFSDALNHASIIDGIRIAERT---K--------MVE-- 230 (334)
Q Consensus 169 lv~~sG~~An~~ai~al~~~~~~~~~~~~-----~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~---~--------g~~-- 230 (334)
++++||++||..+|+...+.-. ...+.. +..++..+|..+..+|+.+..++.++... . +..
T Consensus 446 ff~~SGSeA~E~AlK~A~r~~~-~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~ 524 (831)
T 4a0g_A 446 YFSDNGSTAIEIALKMAFRKFC-VDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLF 524 (831)
T ss_dssp EEESSHHHHHHHHHHHHHHHHH-HTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEE
T ss_pred EECCChhHHHHHHHHHHHHHHH-hhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccc
Confidence 9999999999999997633200 000100 00124578889999999999888775310 0 000
Q ss_pred -------------EEEee------------CCCH------------------HHHHHHHhc-----CCCCcEEEEEcCC-
Q 019931 231 -------------VFVYK------------HCDM------------------SHLKTLLSC-----CTMRKKVVVTDSL- 261 (334)
Q Consensus 231 -------------v~~~~------------~~D~------------------~~Le~~l~~-----~~~~~~lVv~e~v- 261 (334)
.+.++ ++|+ ++||++|++ ...++++|++|++
T Consensus 525 ~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvv 604 (831)
T 4a0g_A 525 LDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 604 (831)
T ss_dssp ECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSE
T ss_pred cCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEeccc
Confidence 11122 2232 567777763 1246789999998
Q ss_pred CCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccccCCc----cEEe
Q 019931 262 FSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAGCQG----GFIA 332 (334)
Q Consensus 262 ~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G~~G----G~i~ 332 (334)
++..|.+.| |++|+++|++||++||+||+|+. +|++|..++ +++++.|+ |+ ||+|++|+ | |+++
T Consensus 605 qg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tG--fGRtG~~fa~e~~gv~PD--ii--tlsK~L~g-G~~Plgav~ 677 (831)
T 4a0g_A 605 HGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTG--FWRLGVETTTELLGCKPD--IA--CFAKLLTG-GMVPLAVTL 677 (831)
T ss_dssp ETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTT--TTTTSBSSTHHHHSSCCS--EE--EECGGGGT-TSSCCEEEE
T ss_pred ccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccc--cccCCCchhhHhcCCCCc--EE--EEeccccc-CccCcEEEE
Confidence 788887765 99999999999999999999984 788887764 78898874 54 89999975 3 5565
Q ss_pred e
Q 019931 333 C 333 (334)
Q Consensus 333 ~ 333 (334)
+
T Consensus 678 ~ 678 (831)
T 4a0g_A 678 A 678 (831)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.8e-20 Score=174.80 Aligned_cols=196 Identities=11% Similarity=0.035 Sum_probs=142.0
Q ss_pred EEeecCccCCCCCCHHHHHHHHHhc-CC-CCccccccCchHHHHHHHHHHHhH------hCC--CcEEEeccHHHHHHHH
Q 019931 112 LLFSGNDYLGLSSHPTIAKAAARHG-MG-PRGSALICGYTNYHRLLESCLADL------KKK--EDCLLCPTGFAANMAV 181 (334)
Q Consensus 112 l~f~sn~yLgl~~~p~v~~a~~~~g-~g-~~~sr~~~G~~~~~~~LE~~La~~------~g~--e~alv~~sG~~An~~a 181 (334)
|||++|++ .+..+|.+++++.+.- .+ ....+ ++.... .+++++++++ .+. +.+++++++++|+..+
T Consensus 33 idl~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~--y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~ 108 (369)
T 3cq5_A 33 IRLNTNEN-PYPPSEALVADLVATVDKIATELNR--YPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQL 108 (369)
T ss_dssp EECSSCCC-CSCCCHHHHHHHHHHHHHHGGGTTS--CCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHH
T ss_pred eeccCCCC-CCCCCHHHHHHHHHHHHhccccccc--CCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHH
Confidence 89999987 6778999999765431 10 00111 111112 5788888887 343 4567777778899899
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEE
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVV 256 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lV 256 (334)
+.++.++ ||.|++..+.|.++...++.. |.+++.++++ |+++|++++++. ++++|
T Consensus 109 ~~~l~~~--------------gd~Vl~~~~~y~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v 168 (369)
T 3cq5_A 109 LQAFGGP--------------GRTALGFQPSYSMHPILAKGT----HTEFIAVSRGADFRIDMDVALEEIRAK--QPDIV 168 (369)
T ss_dssp HHHHCST--------------TCEEEEEESSCTHHHHHHHHT----TCEEEEEECCTTSSCCHHHHHHHHHHH--CCSEE
T ss_pred HHHhcCC--------------CCEEEEcCCChHHHHHHHHHc----CCEEEEecCCcCCCCCHHHHHHHhhcc--CCCEE
Confidence 9888654 788888888888888777766 7888888753 789999988742 56788
Q ss_pred EEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEee
Q 019931 257 VTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 257 v~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
++++++||+|.+.|+++|.++|+.+++++|+||+|+.+..+ .......+..++.+++++||||+||..| ||+++
T Consensus 169 ~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 245 (369)
T 3cq5_A 169 FVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPS---PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVA 245 (369)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCS---CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEE
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCC---cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEe
Confidence 88999999999999999999999999999999999975432 1111111111215699999999998666 88876
Q ss_pred C
Q 019931 334 R 334 (334)
Q Consensus 334 ~ 334 (334)
+
T Consensus 246 ~ 246 (369)
T 3cq5_A 246 N 246 (369)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-20 Score=180.08 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=125.4
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHh-hhcC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIA-ERTK 227 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls-~~~~ 227 (334)
.+...+||++|+++.|.+.+++++||++|+.+ +.+++++ ||.|++....|......+... ....
T Consensus 66 ~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~-~~~l~~~--------------gd~Vi~~~~~y~~~~~~~~~~~~~~~ 130 (400)
T 3nmy_A 66 NPTRFAYERCVAALEGGTRAFAFASGMAATST-VMELLDA--------------GSHVVAMDDLYGGTFRLFERVRRRTA 130 (400)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH-HHTTSCT--------------TCEEEEESSCCHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCEEEecCHHHHHHH-HHHHcCC--------------CCEEEEeCCCchHHHHHHHHhhHhhc
Confidence 57789999999999999999999999999887 4445543 777777777776555443321 1112
Q ss_pred CcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCccccccc
Q 019931 228 MVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 228 g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
+.+++.++.+|+++|++++++ ++++|++++++|++|.+.|+++|+++|++||++||+|++|+.+.+..
T Consensus 131 g~~~~~v~~~d~~~l~~~i~~---~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~--------- 198 (400)
T 3nmy_A 131 GLDFSFVDLTDPAAFKAAIRA---DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQR--------- 198 (400)
T ss_dssp CCEEEEECTTSHHHHHHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC---------
T ss_pred CeEEEEECCCCHHHHHHHhcc---CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCC---------
Confidence 889999999999999999864 78999999999999999999999999999999999999998765421
Q ss_pred CCCCCccEEEecCcccccC----Ccc-EEe
Q 019931 308 NCERDVDICVGTLSKAAGC----QGG-FIA 332 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~----~GG-~i~ 332 (334)
.+..++|+++.|++|++|+ .|| +++
T Consensus 199 ~~~~g~div~~S~sK~l~g~g~~~gG~~vv 228 (400)
T 3nmy_A 199 PLSLGADLVVHSATKYLNGHSDMVGGIAVV 228 (400)
T ss_dssp GGGGTCSEEEEETTTTTTCSSSCCCEEEEE
T ss_pred hhhcCCcEEEecCccccCCCCCcceeEEEE
Confidence 1112578999999999984 467 444
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=174.96 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=127.9
Q ss_pred HHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEE
Q 019931 154 LLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFV 233 (334)
Q Consensus 154 ~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~ 233 (334)
+||+++++++|.++++++++|++|+..++.++.++ ||.|++..+.|.+....+.......+.+++.
T Consensus 2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~~--------------g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~ 67 (331)
T 1pff_A 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKA--------------GDHLISDDCLYGCTHALFEHQLRKFGVEVDF 67 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCT--------------TCEEEEESCCCHHHHHHHHTHHHHTTCEEEE
T ss_pred hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCC--------------CCEEEEcCCCcchHHHHHHHHHHhcCCEEEE
Confidence 68999999999999999999999999999987654 7778888888888776654211112789999
Q ss_pred eeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHH-cCCEEEEecCcccccccCCCcccccccCCCCC
Q 019931 234 YKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRK-YGFLLVLDDAHGTFVCGKNGGGVAEQFNCERD 312 (334)
Q Consensus 234 ~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k-~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~ 312 (334)
++..|+++|++.+++ ++++|++++++||+|.+.|+++|.++|++ +|+++|+|++|+.|.+.. .. ..+
T Consensus 68 ~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~---~~------~~~ 135 (331)
T 1pff_A 68 IDMAVPGNIEKHLKP---NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTN---PL------DLG 135 (331)
T ss_dssp ECTTSTTHHHHTCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCC---GG------GGT
T ss_pred eCCCCHHHHHHhhcC---CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCC---hh------hcC
Confidence 999999999998863 78999999999999999999999999999 999999999999875421 11 234
Q ss_pred ccEEEecCcccccCC----ccEEeeC
Q 019931 313 VDICVGTLSKAAGCQ----GGFIACR 334 (334)
Q Consensus 313 ~Div~~SlsKa~G~~----GG~i~~~ 334 (334)
+|+++.|+||+||+. +|+++++
T Consensus 136 ~d~~~~s~~K~~~~~~~r~~G~~~~~ 161 (331)
T 1pff_A 136 VDIVVHSATKYINGHTDVVAGLVCSR 161 (331)
T ss_dssp CSEEEEETTTTTSSSSSCCCEEEEEC
T ss_pred CcEEEEECccccCCCCCceEEEEEeC
Confidence 689999999999763 6788764
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.83 E-value=6.8e-20 Score=178.39 Aligned_cols=158 Identities=15% Similarity=0.137 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+...+||++|++++|.+++++++||++|+..++. ++++ ||.|++....|.+....+.......|
T Consensus 66 ~p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~-l~~~--------------gd~Vl~~~~~y~~~~~~~~~~~~~~G 130 (403)
T 3cog_A 66 NPTRNCLEKAVAALDGAKYCLAFASGLAATVTITH-LLKA--------------GDQIICMDDVYGGTNRYFRQVASEFG 130 (403)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHT-TSCT--------------TCEEEEESSCCHHHHHHHHHTGGGGT
T ss_pred CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhCC--------------CCEEEEeCCCcchHHHHHHHHHHHcC
Confidence 36679999999999999899999999999999888 6654 77788877888776555432212238
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcC-CEEEEecCcccccccCCCccccccc
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYG-FLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~g-a~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
.+++.++.+|+++|++++++ ++++|++++++||+|.+.|+++|.++|+++| ++||+|++|+.+.+..
T Consensus 131 ~~v~~v~~~d~~~l~~~i~~---~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~--------- 198 (403)
T 3cog_A 131 LKISFVDCSKIKLLEAAITP---ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQR--------- 198 (403)
T ss_dssp CEEEEECTTSHHHHHHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCC---------
T ss_pred CEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCC---------
Confidence 89999999999999998864 7899999999999999999999999999999 9999999999875421
Q ss_pred CCCCCccEEEecCcccccCC----ccEEee
Q 019931 308 NCERDVDICVGTLSKAAGCQ----GGFIAC 333 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~~----GG~i~~ 333 (334)
.+..++||++.|+||.||+. +|++++
T Consensus 199 ~~~~~~div~~S~sK~~~g~~~~~~G~v~~ 228 (403)
T 3cog_A 199 PLALGADISMYSATKYMNGHSDVVMGLVSV 228 (403)
T ss_dssp TTTTTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred ccccCCeEEEEcChhhccCCCCCeEEEEEE
Confidence 11235789999999999863 488876
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-20 Score=176.95 Aligned_cols=206 Identities=16% Similarity=0.071 Sum_probs=144.2
Q ss_pred ceeEEEeecCccCCCC----CCHHHHHHHHHhc-C-CCCccccccCchHHHHHHHHHHHhHh---C-----CCcEEE--e
Q 019931 108 FKRLLLFSGNDYLGLS----SHPTIAKAAARHG-M-GPRGSALICGYTNYHRLLESCLADLK---K-----KEDCLL--C 171 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~----~~p~v~~a~~~~g-~-g~~~sr~~~G~~~~~~~LE~~La~~~---g-----~e~alv--~ 171 (334)
+++++||++++|++.. .+|.+++++.+.- . ...++....| ..+|++++++++ + .+++++ +
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g----~~~lr~~la~~~~~~~~~~~~~~~v~~~~~ 100 (396)
T 2q7w_A 25 RPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDG----IPEFGRCTQELLFGKGSALINDKRARTAQT 100 (396)
T ss_dssp ---CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCC----CHHHHHHHHHHHhcCCCCccccccEEEEec
Confidence 4678999999987653 4689999876541 1 1111212222 366777777776 2 356777 8
Q ss_pred ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC---C----CHHHHHH
Q 019931 172 PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH---C----DMSHLKT 244 (334)
Q Consensus 172 ~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~---~----D~~~Le~ 244 (334)
++|++|+..++.++..- .+||.|++..+.|......++.. |.+++.++. + |+++|++
T Consensus 101 ~g~~~a~~~~~~~~~~~------------~~gd~Vl~~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~ 164 (396)
T 2q7w_A 101 PGGTGALRVAADFLAKN------------TSVKRVWVSNPSWPNHKSVFNSA----GLEVREYAYYDAENHTLDFDALIN 164 (396)
T ss_dssp SHHHHHHHHHHHHHHHH------------SCCCEEEEEESCCTHHHHHHHHT----TCEEEEEECEETTTTEECHHHHHH
T ss_pred ccchhhHHHHHHHHHHh------------CCCCEEEEcCCCchhHHHHHHHc----CCceEEEecccCCCCCcCHHHHHH
Confidence 99999999998876431 13777888888888887777766 788888876 3 8999999
Q ss_pred HHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEecC
Q 019931 245 LLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVGTL 320 (334)
Q Consensus 245 ~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~Sl 320 (334)
++++.++++++|++.+++||+|.+.| +++|+++|++||++||+||+|+...++....+. ...+...++.+|+++||
T Consensus 165 ~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 244 (396)
T 2q7w_A 165 SLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSY 244 (396)
T ss_dssp HHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEEC
T ss_pred HHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEec
Confidence 99754335788999999999999876 667999999999999999999865443100111 11122123346889999
Q ss_pred cccccCCc---cEEee
Q 019931 321 SKAAGCQG---GFIAC 333 (334)
Q Consensus 321 sKa~G~~G---G~i~~ 333 (334)
||+||+.| ||+++
T Consensus 245 sK~~~~~G~riG~~~~ 260 (396)
T 2q7w_A 245 SXNFGLYNERVGACTL 260 (396)
T ss_dssp TTTTTCGGGCCEEEEE
T ss_pred cccccccccccceEEE
Confidence 99999767 88764
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-20 Score=177.27 Aligned_cols=203 Identities=14% Similarity=0.074 Sum_probs=146.8
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC-CCCccccccCchHHHHHHHHHHHhHh-CCC-------cE--EEeccHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM-GPRGSALICGYTNYHRLLESCLADLK-KKE-------DC--LLCPTGFAA 177 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~-g~~~sr~~~G~~~~~~~LE~~La~~~-g~e-------~a--lv~~sG~~A 177 (334)
.++|||++++|+++..+|.+.+++++... +..++....|. .+|++++++++ |.+ .+ +.+++|+.|
T Consensus 41 ~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~----~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga 116 (409)
T 4eu1_A 41 KRKVNLSIGVYRDDADQPFVLECVKQATLGTNMDYAPVTGI----ASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGA 116 (409)
T ss_dssp SSCEECCCSSCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCC----HHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHH
T ss_pred cCceeeeeeEEECCCCCEeecHHHHhcCccccccCCCCCCc----HHHHHHHHHHHcCCCchhhccCceeeeecccchHH
Confidence 57899999999999999999998877621 22222223333 56778888865 432 34 347888888
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCC
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCT 250 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~ 250 (334)
+..+...+.. ..++||.|+++.+.|.++...++.. |.+++.++. .|+++|++.+++.+
T Consensus 117 ~~~~~~~~~~-----------~~~~gd~Vlv~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 181 (409)
T 4eu1_A 117 LRIGGDLLNR-----------FVANCNRIYGPDVGYPNHESIFAKA----GMELTPYSYYDPATKGLNLAGMLECLDKAP 181 (409)
T ss_dssp HHHHHHHGGG-----------TSSSCCEEEEESSCCTHHHHHHHHT----TCEEEEECCEETTTTEECHHHHHHHHHHSC
T ss_pred HHHHHHHHHH-----------hcCCCCEEEEeCCCcHhHHHHHHHc----CCeEEEEEeecCcCCcCcHHHHHHHHHhCC
Confidence 8776543321 1124789999999999988888877 888888875 28999999997543
Q ss_pred CCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccC---CCcccccccCCCCCccEEEecCcccc
Q 019931 251 MRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGK---NGGGVAEQFNCERDVDICVGTLSKAA 324 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~---~G~g~~~~~~~~~~~Div~~SlsKa~ 324 (334)
.+++++++++++||+|.+.+ +++|+++|++||+++|+||+|+...++. .+.++....+..++ .|+++||||+|
T Consensus 182 ~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~ 260 (409)
T 4eu1_A 182 EGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPN-LIVAQSFSKNF 260 (409)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSC-CEEEEECTTTS
T ss_pred CCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCc-EEEEecCcccc
Confidence 46778888999999999888 5569999999999999999998765543 11222222233333 48899999999
Q ss_pred cCCc---cEE
Q 019931 325 GCQG---GFI 331 (334)
Q Consensus 325 G~~G---G~i 331 (334)
|+.| ||+
T Consensus 261 g~~G~riG~~ 270 (409)
T 4eu1_A 261 GLYGHRCGAL 270 (409)
T ss_dssp SCGGGCCEEE
T ss_pred cCccCCceEE
Confidence 9877 885
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-20 Score=178.81 Aligned_cols=157 Identities=17% Similarity=0.103 Sum_probs=127.9
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..+++|++|++++|.+++++|+||++|+..++. ++++ ||.|++....|.+....+.......|
T Consensus 54 ~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~al~-~~~~--------------gd~Vi~~~~~y~~~~~~~~~~~~~~G 118 (393)
T 1n8p_A 54 NPNRENLERAVAALENAQYGLAFSSGSATTATILQ-SLPQ--------------GSHAVSIGDVYGGTHRYFTKVANAHG 118 (393)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH-TSCS--------------SCEEEEESSCCHHHHHHHHHTSTTTC
T ss_pred ChhHHHHHHHHHHHhCCCcEEEECChHHHHHHHHH-HcCC--------------CCEEEEeCCCchHHHHHHHHHHHHcC
Confidence 46679999999999999899999999999999998 7654 67777777777766554432212237
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHc----CCEEEEecCcccccccCCCcccc
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKY----GFLLVLDDAHGTFVCGKNGGGVA 304 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~----ga~LivDeAh~~Gv~G~~G~g~~ 304 (334)
.+++.++.+| ++|++++++ ++++|++++++|++|.+.|+++|.++|+++ |++||+|++|+.+.+. . .
T Consensus 119 ~~v~~v~~~d-~~l~~~i~~---~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~---~-~- 189 (393)
T 1n8p_A 119 VETSFTNDLL-NDLPQLIKE---NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS---N-P- 189 (393)
T ss_dssp SCCEEESSHH-HHHHHHSCS---SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC---C-G-
T ss_pred cEEEEeCCCh-HHHHHhccc---CceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC---C-H-
Confidence 8888888878 899988864 789999999999999999999999999999 9999999999987542 1 1
Q ss_pred cccCCCCCccEEEecCcccccCCc----cEEee
Q 019931 305 EQFNCERDVDICVGTLSKAAGCQG----GFIAC 333 (334)
Q Consensus 305 ~~~~~~~~~Div~~SlsKa~G~~G----G~i~~ 333 (334)
.. .++||++.|+||.+|+.| |++++
T Consensus 190 --~~--~~~di~~~S~sK~~g~~G~rigG~~~~ 218 (393)
T 1n8p_A 190 --LN--FGADIVVHSATKYINGHSDVVLGVLAT 218 (393)
T ss_dssp --GG--GTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred --HH--cCCeEEEEECcccccCCCCceeEEEEe
Confidence 11 147899999999999754 88876
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=176.01 Aligned_cols=206 Identities=11% Similarity=0.040 Sum_probs=145.8
Q ss_pred ceeEEEeecCccC----CCCCCHHHHHHHHHhcC-CCCccccccCchHHHHHHHHHHHhHhCCC---cEEEeccHHHHHH
Q 019931 108 FKRLLLFSGNDYL----GLSSHPTIAKAAARHGM-GPRGSALICGYTNYHRLLESCLADLKKKE---DCLLCPTGFAANM 179 (334)
Q Consensus 108 g~~~l~f~sn~yL----gl~~~p~v~~a~~~~g~-g~~~sr~~~G~~~~~~~LE~~La~~~g~e---~alv~~sG~~An~ 179 (334)
|++++||+.++|+ .+..+|.+++++++... +..++....|...+.+++.+.+....+.+ .++++++|++|+.
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~ 116 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIH 116 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHH
Confidence 4689999999874 44457788887765432 11223334555555566666665555666 7888999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC------CCHHHHHHHHhcC--CC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH------CDMSHLKTLLSCC--TM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~------~D~~~Le~~l~~~--~~ 251 (334)
.++.+++++ ||.|++..+.|..+...++.. |.+++.++. .|+++|++.+++. ++
T Consensus 117 ~~~~~l~~~--------------gd~Vl~~~p~~~~~~~~~~~~----g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~ 178 (418)
T 3rq1_A 117 HLIHNYTEP--------------GDEVLTADWYWGAYRVICSDT----GRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQ 178 (418)
T ss_dssp HHHHHHSCT--------------TCEEEEESSCCTHHHHHHHHT----TCEEEEECSBCTTSSBCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCC--------------CCEEEECCCCchhHHHHHHHc----CCEEEEEeeeCCCCCcCHHHHHHHHHHhhccC
Confidence 999988764 788888888888888887776 888888874 3789999998742 11
Q ss_pred CcEEEEEcCC-CCCCCCccCHHH---HHHHHH------HcCCEEEEecCcccccccCCCc---cccccc-CCCCCc-cEE
Q 019931 252 RKKVVVTDSL-FSMDGDFAPMVE---LVKLRR------KYGFLLVLDDAHGTFVCGKNGG---GVAEQF-NCERDV-DIC 316 (334)
Q Consensus 252 ~~~lVv~e~v-~n~~G~~~pL~~---L~ela~------k~ga~LivDeAh~~Gv~G~~G~---g~~~~~-~~~~~~-Div 316 (334)
.+++|+++++ +||+|.+.|.++ |+++|+ +||++||+||+|... +.+|. .+...+ ++.++. .|+
T Consensus 179 ~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~--~~~~~~~~~~~~~~~~~~~~~~~i~ 256 (418)
T 3rq1_A 179 TNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDY--SGEKDEVRAFFNKFSHLPKEILTCV 256 (418)
T ss_dssp SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGG--SSCHHHHHGGGGGGTTCCTTEEEEE
T ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccc--cCChHHHHHHHHHHHhcCCCceEEE
Confidence 3448889988 999999998555 555565 899999999999743 33332 122222 222221 278
Q ss_pred EecCcccccCCc---cEEee
Q 019931 317 VGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 317 ~~SlsKa~G~~G---G~i~~ 333 (334)
++||||+||+.| ||+++
T Consensus 257 ~~S~sK~~~~~G~r~G~~~~ 276 (418)
T 3rq1_A 257 CYSLSKGFTMYGQRVGAMIG 276 (418)
T ss_dssp EEESTTTTTCCSSCCEEEEE
T ss_pred EEeCCCCCcCcCCcceEEEE
Confidence 899999998776 88876
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=180.07 Aligned_cols=209 Identities=13% Similarity=0.072 Sum_probs=149.1
Q ss_pred EEeecCccCCCC--CCHHHHH----HHHHhcCC-CCccccccCchHHHHHHHHHHHhHhCCC----cE--EEeccHHHHH
Q 019931 112 LLFSGNDYLGLS--SHPTIAK----AAARHGMG-PRGSALICGYTNYHRLLESCLADLKKKE----DC--LLCPTGFAAN 178 (334)
Q Consensus 112 l~f~sn~yLgl~--~~p~v~~----a~~~~g~g-~~~sr~~~G~~~~~~~LE~~La~~~g~e----~a--lv~~sG~~An 178 (334)
++|.++.|+|.. .++.+.+ ++.++... ...+....+...+..++.+.+++++|.+ .+ +++++|++||
T Consensus 94 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~ 173 (514)
T 3mad_A 94 PAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESL 173 (514)
T ss_dssp HHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHH
T ss_pred CCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHH
Confidence 467778888853 5566555 33333222 1222222333455566777778999865 55 8889999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCc
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRK 253 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~ 253 (334)
..+++++..++.--. + ..+|.|++....|.++...++.. |.+++.++.+ |+++|++++++ ++
T Consensus 174 ~~al~a~~~~g~~~~-g-----~~~d~Vi~~~~~~~~~~~~~~~~----G~~v~~v~~~~~~~~d~~~Le~~i~~---~~ 240 (514)
T 3mad_A 174 LLAMKTYRDWARATK-G-----ITAPEAVVPVSAHAAFDKAAQYF----GIKLVRTPLDADYRADVAAMREAITP---NT 240 (514)
T ss_dssp HHHHHHHHHHHHHHH-C-----CSSCEEEEETTSCTHHHHHHHHH----TCEEEEECBCTTSCBCHHHHHHHCCT---TE
T ss_pred HHHHHHHHHHhhhhc-C-----CCCCeEEEeCccchHHHHHHHHc----CCeeEEeeeCCCCCCCHHHHHHHhcc---CC
Confidence 999999876521000 0 01378999999999999888887 8888888865 89999999874 78
Q ss_pred EEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccc---cCCCcccccccCCCCCccEEEecCcccc-cCCc-
Q 019931 254 KVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVC---GKNGGGVAEQFNCERDVDICVGTLSKAA-GCQG- 328 (334)
Q Consensus 254 ~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~---G~~G~g~~~~~~~~~~~Div~~SlsKa~-G~~G- 328 (334)
++|++++++|++|.+.|+++|.++|++||++||+|++|+.+++ +..|...........++|+++.|++|.+ ++.|
T Consensus 241 ~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~ 320 (514)
T 3mad_A 241 VVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGT 320 (514)
T ss_dssp EEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSC
T ss_pred EEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCe
Confidence 9999999999999999999999999999999999999997654 2233321111112356799999999995 4433
Q ss_pred cEEee
Q 019931 329 GFIAC 333 (334)
Q Consensus 329 G~i~~ 333 (334)
|++++
T Consensus 321 g~~~~ 325 (514)
T 3mad_A 321 SVILY 325 (514)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 56543
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=172.50 Aligned_cols=179 Identities=15% Similarity=0.102 Sum_probs=138.7
Q ss_pred CCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--c-EEEeccHHHHHHHHHHHHhhhhhhccCCCccCC
Q 019931 124 SHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--D-CLLCPTGFAANMAVIVAVGNIASLLAGDEKSFK 200 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~-alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~ 200 (334)
.+|.+++++.++.... + .....+..+++++.+++++|.+ + ++++++|++|+..++.+++++
T Consensus 31 ~~~~v~~a~~~~~~~~--~--~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~------------ 94 (386)
T 2dr1_A 31 CFPEVLEIMKVQMFSH--R--SKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSK------------ 94 (386)
T ss_dssp CCHHHHHHTTSCCCCT--T--SHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCT------------
T ss_pred CcHHHHHHHhcccccc--c--CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcC------------
Confidence 4788888887654321 1 1112577899999999999976 4 667799999999999988654
Q ss_pred CCCeEEEEcCCCchh--hHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHH
Q 019931 201 DEKIAIFSDALNHAS--IIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVE 273 (334)
Q Consensus 201 ~~gd~Vl~d~~~H~s--~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~ 273 (334)
||.|++..+.|.+ +...++.. |++++.++. .|+++|++++++. +++++|++++++|++|.+.|+++
T Consensus 95 --gd~vl~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~l~~ 167 (386)
T 2dr1_A 95 --GGKVLVTIIGAFGKRYKEVVESN----GRKAVVLEYEPGKAVKPEDLDDALRKN-PDVEAVTITYNETSTGVLNPLPE 167 (386)
T ss_dssp --TCEEEEEESSHHHHHHHHHHHHT----TCEEEEEECCTTCCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEECCHHH
T ss_pred --CCeEEEEcCCchhHHHHHHHHHh----CCceEEEecCCCCCCCHHHHHHHHhcC-CCCcEEEEEeecCCcchhCCHHH
Confidence 7788888788876 55555554 788888876 5899999999642 26789998999999999999999
Q ss_pred HHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCC-c-cEEeeC
Q 019931 274 LVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQ-G-GFIACR 334 (334)
Q Consensus 274 L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~-G-G~i~~~ 334 (334)
|.++|++||++||+|++|+.|.+. .++. .++|+++.|+||+|++. | |+++++
T Consensus 168 i~~l~~~~~~~li~D~a~~~~~~~---------~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~ 222 (386)
T 2dr1_A 168 LAKVAKEHDKLVFVDAVSAMGGAD---------IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFS 222 (386)
T ss_dssp HHHHHHHTTCEEEEECTTTBTTBC---------CCTTTTTCSEEEEETTSTTCCCSSCEEEEEC
T ss_pred HHHHHHHcCCeEEEEccccccCcc---------ccccccCCcEEEEeccccccCCCceEEEEEC
Confidence 999999999999999999976432 1111 24689999999999864 4 787764
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-20 Score=176.20 Aligned_cols=173 Identities=15% Similarity=0.125 Sum_probs=135.8
Q ss_pred CHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHH-hhhhhhccCCCccCCCCC
Q 019931 125 HPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAV-GNIASLLAGDEKSFKDEK 203 (334)
Q Consensus 125 ~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al-~~~~~~~~~~~~~~~~~g 203 (334)
+|++++++.+.-... .++..+...++|+++++++|.+++++++||++|+..++.++ .+ +|
T Consensus 16 ~~~~~~a~~~~~~~~-----~~~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~--------------~g 76 (373)
T 3frk_A 16 EYEIKFKFEEIYKRN-----WFILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIG--------------FG 76 (373)
T ss_dssp HHHHHHHHHHHHHHT-----CCSSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCC--------------TT
T ss_pred CHHHHHHHHHHHHCC-----CccCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCC--------------Cc
Confidence 356666655432110 12345788999999999999999999999999999999987 54 37
Q ss_pred eEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHH
Q 019931 204 IAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKL 277 (334)
Q Consensus 204 d~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~el 277 (334)
|.|+++.+.|.++...++.. |++++.++.+ |+++|++++++ ++++|+ ++|++|.+.|+++|.++
T Consensus 77 d~Vi~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~d~~~l~~~l~~---~~~~v~---~~n~~G~~~~l~~i~~l 146 (373)
T 3frk_A 77 DEVIVPSNTFIATALAVSYT----GAKPIFVEPDIRTYNIDPSLIESAITE---KTKAII---AVHLYGQPADMDEIKRI 146 (373)
T ss_dssp CEEEEETTSCTHHHHHHHHH----SCEEEEECEETTTTEECGGGTGGGCCT---TEEEEE---EECCTTCCCCHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHc----CCEEEEEeccccccCcCHHHHHHhcCC---CCeEEE---EECCCcCcccHHHHHHH
Confidence 88999999999998888777 8888888765 88999888764 678887 56789999999999999
Q ss_pred HHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCc--ccccC--CccEEee
Q 019931 278 RRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLS--KAAGC--QGGFIAC 333 (334)
Q Consensus 278 a~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sls--Ka~G~--~GG~i~~ 333 (334)
|++||++||+|++|+.|.. ..+. ..+. ..|+++.||+ |.+|+ .||++++
T Consensus 147 ~~~~~~~li~D~a~~~g~~-~~~~----~~~~--~~d~~~~S~~~~K~l~~~g~gg~~~~ 199 (373)
T 3frk_A 147 AKKYNLKLIEDAAQAHGSL-YKGM----KVGS--LGDAAGFSFYPAKNLGSLGDGGAVVT 199 (373)
T ss_dssp HHHHTCEEEEECTTCTTCE-ETTE----ETTS--SSSEEEEECCTTSSSCCSSSCEEEEE
T ss_pred HHHcCCEEEEECCcccCCE-ECCE----eccc--cccEEEEeCcCCCccCccceeEEEEe
Confidence 9999999999999998754 2221 1221 1478999977 99976 5788876
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-19 Score=170.51 Aligned_cols=205 Identities=14% Similarity=0.081 Sum_probs=145.8
Q ss_pred eeEEEeecCccCCCC----CCHHHHHHHHH-hcC--CCCccccccCchHHHHHHHHHHHhHhC----CC--cEEEeccHH
Q 019931 109 KRLLLFSGNDYLGLS----SHPTIAKAAAR-HGM--GPRGSALICGYTNYHRLLESCLADLKK----KE--DCLLCPTGF 175 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~----~~p~v~~a~~~-~g~--g~~~sr~~~G~~~~~~~LE~~La~~~g----~e--~alv~~sG~ 175 (334)
..++||+.+.|+.-. .+|.|++++.+ .-. +..++....|..++.+++.+.+....+ .+ .++++++|+
T Consensus 26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~ 105 (397)
T 3fsl_A 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS 105 (397)
T ss_dssp SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcH
Confidence 468999999655332 23889998876 432 223344445555555555555544333 34 567888999
Q ss_pred HHHHHHHH--HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC----C---CHHHHHHHH
Q 019931 176 AANMAVIV--AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH----C---DMSHLKTLL 246 (334)
Q Consensus 176 ~An~~ai~--al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~----~---D~~~Le~~l 246 (334)
+|+..++. +++.+ ||.|++..+.|.+....++.. |.+++.+++ + |+++|++.+
T Consensus 106 ~a~~~~~~~~~~~~~--------------gd~vl~~~p~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~l 167 (397)
T 3fsl_A 106 GALKVGADFLKRYFP--------------ESGVWVSDPTWENHVAIFAGA----GFEVSTYPWYDEATNGVRFNDLLATL 167 (397)
T ss_dssp HHHHHHHHHHHHHCT--------------TCCEEEESSCCHHHHHHHHHT----TCCEEEECCEETTTTEECHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC--------------CCeEEEeCCCchhHHHHHHHc----CCceEEEeeeeccCCcCcHHHHHHHH
Confidence 99999854 33443 778888888998888887776 788888876 4 899999999
Q ss_pred hcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCC--cccccccCCCCCccEEEecCc
Q 019931 247 SCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNG--GGVAEQFNCERDVDICVGTLS 321 (334)
Q Consensus 247 ~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G--~g~~~~~~~~~~~Div~~Sls 321 (334)
++.++++++|++++++||+|.+.+ +++|+++|++||++||+||+|+...++..+ ..+.. +.-..+.+|+++|||
T Consensus 168 ~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~S~S 246 (397)
T 3fsl_A 168 KTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRA-IASAGLPALVSNSFS 246 (397)
T ss_dssp TTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHH-HHHTTCCEEEEEECT
T ss_pred HhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHH-HHhcCCCEEEEeccc
Confidence 865447899999999999998866 668999999999999999999976654211 11111 111234468999999
Q ss_pred ccccCCc---cEEe
Q 019931 322 KAAGCQG---GFIA 332 (334)
Q Consensus 322 Ka~G~~G---G~i~ 332 (334)
|++|+.| ||++
T Consensus 247 K~~~~~G~riG~~~ 260 (397)
T 3fsl_A 247 KIFSLYGERVGGLS 260 (397)
T ss_dssp TTTTCGGGCCEEEE
T ss_pred ccccCcCCCeeEEE
Confidence 9999777 8875
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-19 Score=177.05 Aligned_cols=212 Identities=13% Similarity=0.123 Sum_probs=148.0
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHH-hcCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHH
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAAR-HGMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFA 176 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~-~g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~ 176 (334)
.+|.+|++||||.+. ..||. +||+|.+|+++ .......+.+....++...+|.++|+++.+ .+++++++||++
T Consensus 61 l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsE 139 (473)
T 4e3q_A 61 IVDVNGRRYLDANSGLWNMVAGF-DHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSE 139 (473)
T ss_dssp EEETTCCEEEETTTTTTTCTTCS-CCHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHH
T ss_pred EEeCCCCEEEEcccCHHHhhccC-CCHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHH
Confidence 467889999999774 45677 58999997754 333322223333346777889999999985 467888899999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc---------CCcEEEEeeC----C------
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT---------KMVEVFVYKH----C------ 237 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~---------~g~~v~~~~~----~------ 237 (334)
||+.+++....... ..+ .+++..+|.....+|+.....+.++... .+...+.+++ .
T Consensus 140 A~e~AiKlAr~~~~--~~g---~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 214 (473)
T 4e3q_A 140 ANDTMVKMLWFLHA--AEG---KPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETE 214 (473)
T ss_dssp HHHHHHHHHHHHHH--HTT---CTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCH
T ss_pred HHHHHHHHHHHHHH--hcC---CCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchh
Confidence 99999996542100 000 1234567778889999877666554210 0111222221 1
Q ss_pred ------CHHHHHHHHhcC-CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-c
Q 019931 238 ------DMSHLKTLLSCC-TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-E 305 (334)
Q Consensus 238 ------D~~~Le~~l~~~-~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~ 305 (334)
..+++++++.+. ..+..+|++|++.+..|.+.| |++|+++|++||++||+||+++. +|++|.+++ +
T Consensus 215 ~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tG--fGRtG~~fa~e 292 (473)
T 4e3q_A 215 EQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICG--FGRTGNTWGCV 292 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTS--SSTTSSSCHHH
T ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCcccc--CCcccchhHHH
Confidence 134566666543 235688999999999898766 99999999999999999999984 899999874 7
Q ss_pred ccCCCCCccEEEecCcccccC
Q 019931 306 QFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 306 ~~~~~~~~Div~~SlsKa~G~ 326 (334)
++++.|| |+ |++|+++.
T Consensus 293 ~~gv~PD--i~--t~~K~l~g 309 (473)
T 4e3q_A 293 TYDFTPD--AI--ISSKNLTA 309 (473)
T ss_dssp HTTCCCS--EE--EECGGGGT
T ss_pred hcCCCCC--hH--HhcccccC
Confidence 8999884 55 89999963
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-19 Score=173.82 Aligned_cols=205 Identities=15% Similarity=0.040 Sum_probs=146.7
Q ss_pred eeEEEeecCccCCCC--C--CHHHHHHHHHhc-C-CCCccccccCchHHHHHHHHHHHhHhC----CC--cEEEeccHHH
Q 019931 109 KRLLLFSGNDYLGLS--S--HPTIAKAAARHG-M-GPRGSALICGYTNYHRLLESCLADLKK----KE--DCLLCPTGFA 176 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~--~--~p~v~~a~~~~g-~-g~~~sr~~~G~~~~~~~LE~~La~~~g----~e--~alv~~sG~~ 176 (334)
..+|||+.+.|+.-. . +|.|++++.+.- . +..++....|..++.+++.+.+....+ .+ .++++++|++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 568999998654322 2 378999776532 2 223344456666666666666655443 34 5677889999
Q ss_pred HHHHHHH--HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC----C---CHHHHHHHHh
Q 019931 177 ANMAVIV--AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH----C---DMSHLKTLLS 247 (334)
Q Consensus 177 An~~ai~--al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~----~---D~~~Le~~l~ 247 (334)
|+..++. +++.+ ||.|++..+.|.+....++.. |.+++.++. + |+++|++.++
T Consensus 129 al~~~~~~~~~~~~--------------gd~Vlv~~p~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~l~ 190 (420)
T 4f4e_A 129 ALKIGADFLRTLNP--------------KAKVAISDPSWENHRALFDMA----GFEVVAYPYYDAKTNGVNFDGMLAALN 190 (420)
T ss_dssp HHHHHHHHHHHHCT--------------TCCEEEEESCCHHHHHHHHHT----TCCEEEEECEETTTTEECHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC--------------CCEEEEeCCCcHhHHHHHHHc----CCeEEEeeeeccccCccCHHHHHHHHH
Confidence 9999854 44543 778888888888888888777 788888876 3 8999999998
Q ss_pred cCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCC--CcccccccCCCCCccEEEecCcc
Q 019931 248 CCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKN--GGGVAEQFNCERDVDICVGTLSK 322 (334)
Q Consensus 248 ~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~--G~g~~~~~~~~~~~Div~~SlsK 322 (334)
+.++++++|++++++||+|.+.+ +++|+++|++||+++|+||+|+...++.. ...+....+ ..+.+|+++||||
T Consensus 191 ~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK 269 (420)
T 4f4e_A 191 GYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAA-ANLNVFVSSSFSK 269 (420)
T ss_dssp TCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHH-TTCCEEEEEECTT
T ss_pred hCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHh-cCCCEEEEEeCCc
Confidence 65457899999999999998866 66889999999999999999987655421 111211112 2344699999999
Q ss_pred cccCCc---cEEe
Q 019931 323 AAGCQG---GFIA 332 (334)
Q Consensus 323 a~G~~G---G~i~ 332 (334)
+||+.| ||++
T Consensus 270 ~~~~~G~RiG~~~ 282 (420)
T 4f4e_A 270 SFSLYGERVGALS 282 (420)
T ss_dssp TTTCGGGCEEEEE
T ss_pred cCcCcCCCcEEEE
Confidence 999877 8764
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=172.59 Aligned_cols=209 Identities=13% Similarity=0.083 Sum_probs=145.2
Q ss_pred eEEEeecCccCCCCCCH----HHHHHHHHhcC--CCCccccccCchHHHHHHHHHHHhHhC----CCcEEE--eccHHHH
Q 019931 110 RLLLFSGNDYLGLSSHP----TIAKAAARHGM--GPRGSALICGYTNYHRLLESCLADLKK----KEDCLL--CPTGFAA 177 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p----~v~~a~~~~g~--g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv--~~sG~~A 177 (334)
..+||+.++|++...+| .+++++.++.. +..++....|...+.+++.+.+.+..| .+++++ +++|++|
T Consensus 29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~a 108 (401)
T 7aat_A 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGS 108 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred CceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHH
Confidence 47899999998877554 46776665432 444444455654444444444443333 456665 8899999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCC
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCT 250 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~ 250 (334)
+..++.++..- .++||.|++..+.|......++.. |.+++.++.. |++++++.+++.+
T Consensus 109 l~~~~~~l~~~-----------~~~gd~Vlv~~p~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 173 (401)
T 7aat_A 109 LRVGANFLQRF-----------FKFSRDVYLPKPSWGNHTPIFRDA----GLQLQAYRYYDPKTCSLDFTGAMEDISKIP 173 (401)
T ss_dssp HHHHHHHHHHH-----------CTTCCEEEEEESCCTTHHHHHHHT----TCEEEEEECEETTTTEECHHHHHHHHTTSC
T ss_pred HHHHHHHHHHh-----------ccCCCEEEEcCCCchhHHHHHHHc----CCeeEeeeeeccccCccCHHHHHHHHHhCC
Confidence 99988876521 013788888888888888887776 7888877742 6788888887654
Q ss_pred CCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCC--cccccccCCCCCccEEEecCccccc
Q 019931 251 MRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNG--GGVAEQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G--~g~~~~~~~~~~~Div~~SlsKa~G 325 (334)
+++++|++++++||+|.+.+ +++|+++|++||+++|+||+|....++... ......+.-..+..|+++||||+||
T Consensus 174 ~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~ 253 (401)
T 7aat_A 174 EKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMG 253 (401)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC
T ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccc
Confidence 57899999999999997655 788999999999999999999865443210 0111111111234589999999999
Q ss_pred CCc---cEEee
Q 019931 326 CQG---GFIAC 333 (334)
Q Consensus 326 ~~G---G~i~~ 333 (334)
+.| ||+++
T Consensus 254 ~~G~RiG~l~~ 264 (401)
T 7aat_A 254 LYGERAGAFTV 264 (401)
T ss_dssp CGGGCEEEEEE
T ss_pred cccCceEEEEE
Confidence 887 88653
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=179.16 Aligned_cols=204 Identities=17% Similarity=0.112 Sum_probs=142.5
Q ss_pred eeEEEeecCcc-CCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHh----CC---CcEEEeccHHHHHHH
Q 019931 109 KRLLLFSGNDY-LGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLK----KK---EDCLLCPTGFAANMA 180 (334)
Q Consensus 109 ~~~l~f~sn~y-Lgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~----g~---e~alv~~sG~~An~~ 180 (334)
.++|||+++.+ ..+-.++.+++++.+.-.......+.++......+|+++|++++ |. +.++++++|++|+..
T Consensus 76 ~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~ 155 (448)
T 3aow_A 76 SDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDL 155 (448)
T ss_dssp SSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHH
T ss_pred CCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHH
Confidence 56899988753 33335677888665432110000011111122355666666666 75 567888999999999
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC----CCHHHHHHHHh----cCCCC
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH----CDMSHLKTLLS----CCTMR 252 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~----~D~~~Le~~l~----~~~~~ 252 (334)
++.+++++ ||.|++..+.|.+....++.. +++++.++. .|+++|+++++ +. .+
T Consensus 156 ~~~~l~~~--------------Gd~Vlv~~p~y~~~~~~~~~~----g~~~~~v~~~~~g~d~~~L~~~l~~~~~~~-~~ 216 (448)
T 3aow_A 156 IGRVFLNP--------------GDIVVVEAPTYLAALQAFNFY----EPQYIQIPLDDEGMKVEILEEKLKELKSQG-KK 216 (448)
T ss_dssp HHHHHCCT--------------TCEEEEEESCCHHHHHHHHTT----CCEEEEEEEETTEECHHHHHHHHHHHHHTT-CC
T ss_pred HHHHHcCC--------------CCEEEEeCCChHHHHHHHHHc----CCEEEEeccCCCCCCHHHHHHHHhhhhccC-CC
Confidence 99988764 788888888888888777665 788888875 38999999987 32 25
Q ss_pred cEEE-EEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCC
Q 019931 253 KKVV-VTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQ 327 (334)
Q Consensus 253 ~~lV-v~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~ 327 (334)
+++| ++.+++||+|.+.| +++|+++|++||++||+||+|+.+.++ |........+. .+.+|+++||||+|| .
T Consensus 217 ~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~--g~~~~~~~~~~~~~~vi~~~S~SK~~~-~ 293 (448)
T 3aow_A 217 VKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYS--GNPEKKIKALDNEGRVIYLGTFSKILA-P 293 (448)
T ss_dssp EEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCS--SCCCCCTGGGCTTSCEEEEEESTTTTC-G
T ss_pred CeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCC--CCCCcCHHhcCCCCCEEEEccchhhcc-c
Confidence 7876 57889999999887 568999999999999999999987653 22221111221 235689999999998 6
Q ss_pred c---cEEeeC
Q 019931 328 G---GFIACR 334 (334)
Q Consensus 328 G---G~i~~~ 334 (334)
| ||++++
T Consensus 294 GlriG~v~~~ 303 (448)
T 3aow_A 294 GFRIGWMVGD 303 (448)
T ss_dssp GGCCEEEEEC
T ss_pred cccEEEEEeC
Confidence 6 898864
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=171.87 Aligned_cols=194 Identities=14% Similarity=0.092 Sum_probs=145.0
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC--CCCccccccCchHHHHHHHHHHHhHhCC---CcEEEeccHHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM--GPRGSALICGYTNYHRLLESCLADLKKK---EDCLLCPTGFAANMAVIV 183 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~--g~~~sr~~~G~~~~~~~LE~~La~~~g~---e~alv~~sG~~An~~ai~ 183 (334)
+.+|||++|+ ..+..+|.|++++.+.-. +...+ +. +...+|++++++++|. +.++++++|++|+..++.
T Consensus 30 ~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~~~y----~~-~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 30 HGLVKLDAME-NPYRLPPALRSELAARLGEVALNRY----PV-PSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp TTCEECCSSC-CCCCCCHHHHHHHHHHHHHHHTTCS----CC-CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred CCeeEccCCC-CCCCCCHHHHHHHHHHhhhhhhhcC----CC-CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence 6789999987 677789999997765321 11111 11 2357899999999997 567888899999999999
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEE
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVT 258 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~ 258 (334)
+++++ ||.|++..+.|......++.. |.+++.++. .|+++|++++++. ++++|++
T Consensus 104 ~~~~~--------------gd~Vl~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~l~~~--~~~~v~~ 163 (367)
T 3euc_A 104 AAARP--------------GAKVMAPVPGFVMYAMSAQFA----GLEFVGVPLRADFTLDRGAMLAAMAEH--QPAIVYL 163 (367)
T ss_dssp HTCCT--------------TCEEEEEESCSCCSCHHHHTT----TCEEEEEECCTTSCCCHHHHHHHHHHH--CCSEEEE
T ss_pred HHcCC--------------CCEEEEcCCCHHHHHHHHHHc----CCeEEEecCCCCCCCCHHHHHHHhhcc--CCCEEEE
Confidence 87654 777888777887777776655 788888874 3899999999752 5788888
Q ss_pred cCCCCCCCCccC---HHHHHHHHHHc--CCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cE
Q 019931 259 DSLFSMDGDFAP---MVELVKLRRKY--GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GF 330 (334)
Q Consensus 259 e~v~n~~G~~~p---L~~L~ela~k~--ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~ 330 (334)
++++|++|.+.| +++|+++|++| |+++|+||+|+... + .+.....+. .+.++++.||||+ +..| ||
T Consensus 164 ~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~-~---~~~~~~~~~-~~~~i~~~s~sK~-~~~G~r~G~ 237 (367)
T 3euc_A 164 AYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFA-Q---ESWMSRLTD-FGNLLVMRTVSKL-GLAGIRLGY 237 (367)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSS-S---CCSGGGGGT-CTTEEEEEECCCT-TSCSCCEEE
T ss_pred cCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhc-c---cchHHHHhh-CCCEEEEecchhh-cccccCcee
Confidence 899999999865 77788889999 99999999998632 1 122212221 3346889999999 7665 88
Q ss_pred EeeC
Q 019931 331 IACR 334 (334)
Q Consensus 331 i~~~ 334 (334)
++++
T Consensus 238 ~~~~ 241 (367)
T 3euc_A 238 VAGD 241 (367)
T ss_dssp EEEC
T ss_pred eeeC
Confidence 8763
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-20 Score=179.31 Aligned_cols=201 Identities=17% Similarity=0.145 Sum_probs=140.8
Q ss_pred eeEEEeecC--ccCCCCCCHHHHHHHHHhcC-C---CCccccccCchHHHHHHHHHHHhHh----CC-----CcEEEecc
Q 019931 109 KRLLLFSGN--DYLGLSSHPTIAKAAARHGM-G---PRGSALICGYTNYHRLLESCLADLK----KK-----EDCLLCPT 173 (334)
Q Consensus 109 ~~~l~f~sn--~yLgl~~~p~v~~a~~~~g~-g---~~~sr~~~G~~~~~~~LE~~La~~~----g~-----e~alv~~s 173 (334)
+++|||+++ ++.++ .+|.+++++.+.-. . ...+....|. .+|++++++++ |. +.++++++
T Consensus 43 ~~~idl~~g~~~~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~----~~lr~~la~~l~~~~g~~~~~~~~v~~t~G 117 (425)
T 1vp4_A 43 KDAISFGGGVPDPETF-PRKELAEIAKEIIEKEYHYTLQYSTTEGD----PVLKQQILKLLERMYGITGLDEDNLIFTVG 117 (425)
T ss_dssp TTCEECCCCSCCGGGS-CHHHHHHHHHHHHHHSHHHHTSCCCTTCC----HHHHHHHHHHHHHHHCCCSCCGGGEEEEEH
T ss_pred CCceeCCCCCCCcccC-CHHHHHHHHHHHHhhcchhhcCCCCCCCC----HHHHHHHHHHHHhccCCCCCCcccEEEecc
Confidence 678999886 44444 57888887654321 1 0111112233 55666666666 72 35777788
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC----CCHHHHHHHHhcC
Q 019931 174 GFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH----CDMSHLKTLLSCC 249 (334)
Q Consensus 174 G~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~----~D~~~Le~~l~~~ 249 (334)
|++|+..++.+++++ ||.|++..+.|.+....++.. |.+++.++. .|+++|++++++.
T Consensus 118 ~~~al~~~~~~l~~~--------------gd~Vl~~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~d~~~l~~~l~~~ 179 (425)
T 1vp4_A 118 SQQALDLIGKLFLDD--------------ESYCVLDDPAYLGAINAFRQY----LANFVVVPLEDDGMDLNVLERKLSEF 179 (425)
T ss_dssp HHHHHHHHHHHHCCT--------------TCEEEEEESCCHHHHHHHHTT----TCEEEEEEEETTEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--------------CCEEEEeCCCcHHHHHHHHHc----CCEEEEeccCCCCCCHHHHHHHHHhh
Confidence 899999999988654 788888888888887777665 788887775 3899999988751
Q ss_pred -----CCCcEEE-EEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecC
Q 019931 250 -----TMRKKVV-VTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTL 320 (334)
Q Consensus 250 -----~~~~~lV-v~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sl 320 (334)
..++++| ++.+++||+|.+.| +++|+++|++||++||+||+|+.+.++.........++. .+.+|+++||
T Consensus 180 ~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~i~~~s~ 258 (425)
T 1vp4_A 180 DKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGG-PERVVLLNTF 258 (425)
T ss_dssp HHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHC-TTTEEEEEES
T ss_pred hhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCC-CCCEEEEecc
Confidence 1257777 58899999999887 678999999999999999999976553221111112221 2346899999
Q ss_pred cccccCCc---cEEeeC
Q 019931 321 SKAAGCQG---GFIACR 334 (334)
Q Consensus 321 sKa~G~~G---G~i~~~ 334 (334)
||+|| .| ||++++
T Consensus 259 sK~~~-~G~r~G~~~~~ 274 (425)
T 1vp4_A 259 SKVLA-PGLRIGMVAGS 274 (425)
T ss_dssp TTTTC-GGGCEEEEECC
T ss_pred ccccc-cccceEEEeeC
Confidence 99999 66 888764
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-20 Score=176.06 Aligned_cols=205 Identities=14% Similarity=0.119 Sum_probs=144.2
Q ss_pred eeEEEeecCccCCC----CCCHHHHHHHHHhc-C-CCCccccccCchHHHHHHHHHHHhHh-C----CCcEEE--eccHH
Q 019931 109 KRLLLFSGNDYLGL----SSHPTIAKAAARHG-M-GPRGSALICGYTNYHRLLESCLADLK-K----KEDCLL--CPTGF 175 (334)
Q Consensus 109 ~~~l~f~sn~yLgl----~~~p~v~~a~~~~g-~-g~~~sr~~~G~~~~~~~LE~~La~~~-g----~e~alv--~~sG~ 175 (334)
.+++||++++|++. ..+|.+++++.+.- . ...++....| ..+|++++++++ + .+++++ +++|+
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g----~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~ 101 (394)
T 2ay1_A 26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSG----EPEFQKAMGELILGDGLKSETTATLATVGGT 101 (394)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSC----CHHHHHHHHHHHHGGGCCGGGEEEEEEEHHH
T ss_pred ccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCC----cHHHHHHHHHHHhCCCCCcccEEEEecCCch
Confidence 67899999998654 34799999876542 1 1111211222 367888888875 4 356777 89999
Q ss_pred HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC---C----CHHHHHHHHhc
Q 019931 176 AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH---C----DMSHLKTLLSC 248 (334)
Q Consensus 176 ~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~---~----D~~~Le~~l~~ 248 (334)
+|+..++.++..- .+||.|++..+.|......++.. +.+++.++. + |+++|++++++
T Consensus 102 ~a~~~~~~~~~~~------------~~gd~vl~~~p~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 165 (394)
T 2ay1_A 102 GALRQALELARMA------------NPDLRVFVSDPTWPNHVSIMNFM----GLPVQTYRYFDAETRGVDFEGMKADLAA 165 (394)
T ss_dssp HHHHHHHHHHHHH------------CTTCCEEEEESCCHHHHHHHHHH----TCCEEEEECEETTTTEECHHHHHHHHHT
T ss_pred hHHHHHHHHHHhc------------CCCCEEEEcCCCChhHHHHHHHc----CCceEEEecccccCCccCHHHHHHHHHh
Confidence 9999999877641 02666777777787877777766 777887776 3 89999999976
Q ss_pred CCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEecCcccc
Q 019931 249 CTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVGTLSKAA 324 (334)
Q Consensus 249 ~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~SlsKa~ 324 (334)
.++++++|++++++||+|.+.| +++|+++|++||+++|+||+|+.+.++....+. ...+....+.+|+++||||+|
T Consensus 166 ~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 245 (394)
T 2ay1_A 166 AKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNF 245 (394)
T ss_dssp CCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTT
T ss_pred CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCC
Confidence 4335788889999999999877 667899999999999999999975442100111 111111122358899999999
Q ss_pred cCCc---cEEee
Q 019931 325 GCQG---GFIAC 333 (334)
Q Consensus 325 G~~G---G~i~~ 333 (334)
|+.| ||+++
T Consensus 246 ~~~G~riG~~~~ 257 (394)
T 2ay1_A 246 GIYRERTGCLLA 257 (394)
T ss_dssp TCGGGCEEEEEE
T ss_pred cCcCCccceEEE
Confidence 9767 88765
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=170.99 Aligned_cols=192 Identities=13% Similarity=0.045 Sum_probs=136.4
Q ss_pred cceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHH
Q 019931 107 QFKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVA 184 (334)
Q Consensus 107 ~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~a 184 (334)
+|+++|||++|.. .+..+|.+++++.+.-.....+ . .+...+++++++++++. +.++++++|++|+..++.+
T Consensus 24 ~~~~~idl~~~~~-~~~~~~~v~~a~~~~~~~~~~y---~--~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~ 97 (361)
T 3ftb_A 24 KGRELLDYSSNIN-PLGIPKSFLNNIDEGIKNLGVY---P--DVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISL 97 (361)
T ss_dssp ----CEETTCCCC-TTCSCHHHHTTHHHHHHGGGSC---C--CTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTT
T ss_pred CCCCEEEecCCCC-CCCCCHHHHHHHHHHHHHhcCC---C--CccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHH
Confidence 4589999999842 3446899999765432111111 1 12347899999999984 4677789999999988865
Q ss_pred HhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEc
Q 019931 185 VGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTD 259 (334)
Q Consensus 185 l~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e 259 (334)
+ |.|++..+.|.+....++.. |.+++.++.+ |+++|++++++ +++|+++
T Consensus 98 ~------------------d~vi~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~l~~~l~~----~~~v~i~ 151 (361)
T 3ftb_A 98 F------------------EKILIIVPSYAEYEINAKKH----GVSVVFSYLDENMCIDYEDIISKIDD----VDSVIIG 151 (361)
T ss_dssp C------------------SEEEEEESCCTHHHHHHHHT----TCEEEEEECCTTSCCCHHHHHHHTTT----CSEEEEE
T ss_pred c------------------CcEEEecCChHHHHHHHHHc----CCeEEEeecCcccCCCHHHHHHhccC----CCEEEEe
Confidence 4 34676777777777777766 8888888743 67888888863 7888899
Q ss_pred CCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEe
Q 019931 260 SLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIA 332 (334)
Q Consensus 260 ~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~ 332 (334)
+++||+|.+.| +++|+++|++||++||+||+|+.+.++ .+.+.....+. .+.++++.||||++|..| |+++
T Consensus 152 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G~r~g~~~ 228 (361)
T 3ftb_A 152 NPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKN-YSCLFIIRAMTKFFAMPGIRFGYGI 228 (361)
T ss_dssp TTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTT-CSSEEEEEESSSTTSCGGGCCEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhccc-CCCEEEEeeChhhcCCCCcceeEEE
Confidence 99999999887 667888888999999999999976554 22333333222 234588999999998655 8876
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=173.58 Aligned_cols=198 Identities=17% Similarity=0.193 Sum_probs=126.6
Q ss_pred eEEEe-ecCccCCCCCCHHHHHHHHHh-----cCCCCccccccCch--HHHHHHH-HHHHhHhCCCcEEE-eccHHHHHH
Q 019931 110 RLLLF-SGNDYLGLSSHPTIAKAAARH-----GMGPRGSALICGYT--NYHRLLE-SCLADLKKKEDCLL-CPTGFAANM 179 (334)
Q Consensus 110 ~~l~f-~sn~yLgl~~~p~v~~a~~~~-----g~g~~~sr~~~G~~--~~~~~LE-~~La~~~g~e~alv-~~sG~~An~ 179 (334)
+.+++ ++++|+ ||.|++++.+. +.+..+++...+.. +..+++. +.+++++|.+.+.+ +++|++|+.
T Consensus 33 ~~i~l~~~~~~~----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~ 108 (425)
T 3ecd_A 33 SQVELIASENIV----SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANG 108 (425)
T ss_dssp HSEECCTTCCCC----CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH
T ss_pred cceeeecccCCC----CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHHH
Confidence 34555 455665 99999987543 23444444444432 2345554 77889999988754 899999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchh-hHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHAS-IIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMR 252 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s-~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~ 252 (334)
.++++++++ ||.|++..+.|.+ +..+........+.+++.++.+ |+++|++++++. +
T Consensus 109 ~al~~~~~~--------------gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~--~ 172 (425)
T 3ecd_A 109 AVMLALAKP--------------GDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQH--K 172 (425)
T ss_dssp HHHHHHCCT--------------TCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHH--C
T ss_pred HHHHHccCC--------------CCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhc--C
Confidence 999988654 7888888888877 3344432211113355566543 899999999742 5
Q ss_pred cEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc-cCCccEE
Q 019931 253 KKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQGGFI 331 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~-G~~GG~i 331 (334)
+++|++++++| |...++++|.++|++||++||+||+|..|.+.. +. +++..+.+||+++||||+| |..||++
T Consensus 173 ~~~v~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~-~~----~~~~~~~~di~~~s~sK~l~g~~~g~~ 245 (425)
T 3ecd_A 173 PSLIIAGFSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIAA-GR----HANPVEHAHVVTSTTHKTLRGPRGGFV 245 (425)
T ss_dssp CSEEEEECSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHT-TS----SCCGGGTCSEEEEESSGGGCCCSCEEE
T ss_pred CcEEEEccccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhhc-cc----ccCchhcCcEEEecCCcccCCCCcEEE
Confidence 78888876665 578899999999999999999999998876532 21 1222334689999999999 4578998
Q ss_pred eeC
Q 019931 332 ACR 334 (334)
Q Consensus 332 ~~~ 334 (334)
+++
T Consensus 246 ~~~ 248 (425)
T 3ecd_A 246 LTN 248 (425)
T ss_dssp EES
T ss_pred EeC
Confidence 864
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-19 Score=172.78 Aligned_cols=202 Identities=13% Similarity=0.046 Sum_probs=144.0
Q ss_pred ceeEEEeecCccCCCC----CCHHHHHHHHHhc--CCC-CccccccCchHHHHHHHHHHHhHh-C-------CCcEEE--
Q 019931 108 FKRLLLFSGNDYLGLS----SHPTIAKAAARHG--MGP-RGSALICGYTNYHRLLESCLADLK-K-------KEDCLL-- 170 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~----~~p~v~~a~~~~g--~g~-~~sr~~~G~~~~~~~LE~~La~~~-g-------~e~alv-- 170 (334)
|+.++||++++|++.. .+|.+++++.+.. .+. ..+... ....+|++++++++ + .+++++
T Consensus 29 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~----~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~ 104 (412)
T 1ajs_A 29 DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPI----LGLAEFRTCASRLALGDDSPALQEKRVGGVQ 104 (412)
T ss_dssp CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCT----TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCC----CCCHHHHHHHHHHHhcCCCCccCCCcEEEEE
Confidence 4778999999987643 3588988887653 211 112122 22367888888877 4 267888
Q ss_pred eccHHHHHHHHHHH--HhhhhhhccCCCccCCCCC-----eEEEEcCCCchhhHHHHHHhhhcCCcE-EEEeeC---C--
Q 019931 171 CPTGFAANMAVIVA--VGNIASLLAGDEKSFKDEK-----IAIFSDALNHASIIDGIRIAERTKMVE-VFVYKH---C-- 237 (334)
Q Consensus 171 ~~sG~~An~~ai~a--l~~~~~~~~~~~~~~~~~g-----d~Vl~d~~~H~s~~~g~~ls~~~~g~~-v~~~~~---~-- 237 (334)
+++|++|+..++.. ++.+ | |.|++..+.|......++.. |.+ ++.++. +
T Consensus 105 t~gg~~a~~~~~~~~~~~~~--------------g~~~~~d~Vl~~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~ 166 (412)
T 1ajs_A 105 SLGGTGALRIGAEFLARWYN--------------GTNNKDTPVYVSSPTWENHNGVFTTA----GFKDIRSYRYWDTEKR 166 (412)
T ss_dssp EEHHHHHHHHHHHHHHHHSS--------------SSSCCCSCEEEEESCCTHHHHHHHHT----TCSCEEEEECEETTTT
T ss_pred CCCcHHHHHHHHHHHHHhCc--------------CcCCCCCeEEEcCCCcHHHHHHHHHc----CCceeEEEeeecCCCC
Confidence 99999999998653 3332 5 77777777777777777666 777 777775 3
Q ss_pred --CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCC---ccc-ccccC
Q 019931 238 --DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNG---GGV-AEQFN 308 (334)
Q Consensus 238 --D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G---~g~-~~~~~ 308 (334)
|+++|++++++.+.++++|++.+++||+|.+.| +++|+++|++||++||+||+|....+ .| ... ...+.
T Consensus 167 ~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~--~~~~~~~~~~~~~~ 244 (412)
T 1ajs_A 167 GLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFAS--GNLEKDAWAIRYFV 244 (412)
T ss_dssp EECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTT--SCHHHHTHHHHHHH
T ss_pred ccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccC--CcccccchHHHHHh
Confidence 799999999764446788889999999998866 66899999999999999999885333 22 111 11121
Q ss_pred CCCCccEEEecCcccccCCc---cEEee
Q 019931 309 CERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
..++.+|++.||||++|+.| ||+++
T Consensus 245 ~~~~~~i~~~s~sK~~~~~G~riG~~~~ 272 (412)
T 1ajs_A 245 SEGFELFCAQSFSKNFGLYNERVGNLTV 272 (412)
T ss_dssp HTTCCEEEEEECTTTSCCGGGCEEEEEE
T ss_pred ccCCcEEEEEecccccCCCCcceEEEEE
Confidence 12334588999999999877 88875
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-20 Score=178.57 Aligned_cols=202 Identities=20% Similarity=0.195 Sum_probs=141.5
Q ss_pred eeEEEeecC--ccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHH
Q 019931 109 KRLLLFSGN--DYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVA 184 (334)
Q Consensus 109 ~~~l~f~sn--~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~a 184 (334)
++++||+++ ++.++ .+|.+++++.+.-.........++......+|++++++++|. +.++++++|++|+..++.+
T Consensus 32 ~~~i~l~~g~~~~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~ 110 (397)
T 2zyj_A 32 PGILSFAGGLPAPELF-PKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKV 110 (397)
T ss_dssp TTCEEESSCCCCGGGC-CHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHH
T ss_pred CCceecCCCCCCchhC-CHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHH
Confidence 578999876 44443 578888866543110000001111122347899999999885 4677778889999999998
Q ss_pred HhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC----CCHHHHHHHHhcCCCCcEEE-EEc
Q 019931 185 VGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH----CDMSHLKTLLSCCTMRKKVV-VTD 259 (334)
Q Consensus 185 l~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~----~D~~~Le~~l~~~~~~~~lV-v~e 259 (334)
+.++ ||.|++..+.|.+....++.. |.+++.++. .|+++|++++++. ++++| +++
T Consensus 111 ~~~~--------------gd~Vl~~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~v~~~~ 170 (397)
T 2zyj_A 111 FLDE--------------GSPVLLEAPSYMGAIQAFRLQ----GPRFLTVPAGEEGPDLDALEEVLKRE--RPRFLYLIP 170 (397)
T ss_dssp HCCT--------------TCEEEEEESCCHHHHHHHHTT----CCEEEEEEEETTEECHHHHHHHHHHC--CCSCEEECC
T ss_pred hCCC--------------CCEEEEeCCCcHHHHHHHHHc----CCEEEecCcCCCCCCHHHHHHHHhhc--CCeEEEECC
Confidence 8654 778888888888877777665 788887775 3899999999752 46666 678
Q ss_pred CCCCCCCCccCH---HHHHHHHHHcCCEEEEecCcccccccCCCccc--ccccCCC--CCccEEEecCcccccCCc---c
Q 019931 260 SLFSMDGDFAPM---VELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV--AEQFNCE--RDVDICVGTLSKAAGCQG---G 329 (334)
Q Consensus 260 ~v~n~~G~~~pL---~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~--~~~~~~~--~~~Div~~SlsKa~G~~G---G 329 (334)
+++||+|.+.|. ++|+++|++||++||+||+|+.+.++ |... ...++.. .+.+++++|+||+|| .| |
T Consensus 171 ~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G 247 (397)
T 2zyj_A 171 SFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFG--EARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVA 247 (397)
T ss_dssp BSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCS--SCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCE
T ss_pred CCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCC--CCCCCchhhhCcccCCCeEEEEeccccccc-ccceeE
Confidence 999999999884 58999999999999999999976553 2221 1112211 023488999999998 55 8
Q ss_pred EEeeC
Q 019931 330 FIACR 334 (334)
Q Consensus 330 ~i~~~ 334 (334)
|++++
T Consensus 248 ~~~~~ 252 (397)
T 2zyj_A 248 FAVAH 252 (397)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 88764
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-19 Score=171.05 Aligned_cols=203 Identities=14% Similarity=0.067 Sum_probs=142.0
Q ss_pred ceeEEEeecCccCCCC----CCHHHHHHHHH-hcCCC--CccccccCchHHHHHHHHHHHhHh-C-------CCcEEE--
Q 019931 108 FKRLLLFSGNDYLGLS----SHPTIAKAAAR-HGMGP--RGSALICGYTNYHRLLESCLADLK-K-------KEDCLL-- 170 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~----~~p~v~~a~~~-~g~g~--~~sr~~~G~~~~~~~LE~~La~~~-g-------~e~alv-- 170 (334)
+++++||++++|++.. .+|.+++++.+ +.... ..+....| ..+|++++++++ + .+++++
T Consensus 28 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g----~~~lr~~ia~~~~~~~~~~~~~~~i~~~~ 103 (412)
T 1yaa_A 28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITG----LPSLTSNAAKIIFGTQSDALQEDRVISVQ 103 (412)
T ss_dssp CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCC----cHHHHHHHHHHHhcCCCCCCCcceEEEEe
Confidence 4778999999998774 46889998877 54311 11222233 356777777766 2 367888
Q ss_pred eccHHHHHHHHHHH--HhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHH
Q 019931 171 CPTGFAANMAVIVA--VGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSH 241 (334)
Q Consensus 171 ~~sG~~An~~ai~a--l~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~ 241 (334)
+++|++|+..++.. +..+ ||.|++..+.|......++.. |.+++.++. .|+++
T Consensus 104 t~g~~~a~~~~~~~~~~~~~--------------gd~Vl~~~p~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~ 165 (412)
T 1yaa_A 104 SLSGTGALHISAKFFSKFFP--------------DKLVYLSKPTWANHMAIFENQ----GLKTATYPYWANETKSLDLNG 165 (412)
T ss_dssp EEHHHHHHHHHHHHHHHHCT--------------TCCEEEEESCCTTHHHHHHTT----TCCEEEEECEETTTTEECHHH
T ss_pred ccchHhHHHHHHHHHHHhCC--------------CCEEEEeCCCCccHHHHHHHc----CceEEEEeeecCCCCccCHHH
Confidence 88999999988533 2333 677777778888887777665 778877776 27999
Q ss_pred HHHHHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccC---CCcccccccCCCCC--c
Q 019931 242 LKTLLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGK---NGGGVAEQFNCERD--V 313 (334)
Q Consensus 242 Le~~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~---~G~g~~~~~~~~~~--~ 313 (334)
|++.+++.+.+++++++.+++||+|.+.+ +++|+++|++||+++|+||+|....++. .+..+.......++ .
T Consensus 166 l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (412)
T 1yaa_A 166 FLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSP 245 (412)
T ss_dssp HHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCC
T ss_pred HHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcc
Confidence 99999764323567777999999999876 6678999999999999999997544431 11122111111221 4
Q ss_pred cEEEecCcccccCCc---cEEe
Q 019931 314 DICVGTLSKAAGCQG---GFIA 332 (334)
Q Consensus 314 Div~~SlsKa~G~~G---G~i~ 332 (334)
+|+++||||+||+.| ||++
T Consensus 246 ~i~~~s~sK~~~~~GlriG~~~ 267 (412)
T 1yaa_A 246 VFVCQSFAKNAGMYGERVGCFH 267 (412)
T ss_dssp EEEEEECTTTSCCGGGCEEEEE
T ss_pred eEEEeccCCCCCCcCCcceEEE
Confidence 688999999999877 8876
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=170.11 Aligned_cols=201 Identities=15% Similarity=0.142 Sum_probs=144.1
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCc-EEEeccHHHHHHHHHHHHhh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKED-CLLCPTGFAANMAVIVAVGN 187 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~-alv~~sG~~An~~ai~al~~ 187 (334)
..+|||+++.+. ..+|++++++.+...+ +...+|..+..+++++++++++|.+. ++++++|++|+..++.++.+
T Consensus 7 ~~~id~~~~~~~--~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~~ 81 (356)
T 1v72_A 7 PPALGFSSDNIA--GASPEVAQALVKHSSG---QAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTP 81 (356)
T ss_dssp CCCCBCSCGGGC--CCCHHHHHHHHHTTSS---CCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCC
T ss_pred CceEeeccCCcc--CCCHHHHHHHHhhccC---cccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhcC
Confidence 468899988653 3589999998876433 22344556888999999999999665 57779999999999987654
Q ss_pred hhhhccCCCccCCCCCeEEEEcCCCchhhHHH--HHHhhhcC-CcEEEEeeCC----CHHHHHH-HHhcC----CCCcEE
Q 019931 188 IASLLAGDEKSFKDEKIAIFSDALNHASIIDG--IRIAERTK-MVEVFVYKHC----DMSHLKT-LLSCC----TMRKKV 255 (334)
Q Consensus 188 ~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g--~~ls~~~~-g~~v~~~~~~----D~~~Le~-~l~~~----~~~~~l 255 (334)
+ +|.|++..+.|.+.... +... . |.+++.++.+ |+++|++ ++++. .+++++
T Consensus 82 ~--------------gd~vi~~~~~~~~~~~~~~~~~~---~~g~~~~~v~~~~~~~d~~~l~~~~i~~~~~~~~~~~~~ 144 (356)
T 1v72_A 82 P--------------WGNIYCHPASHINNDECGAPEFF---SNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPAC 144 (356)
T ss_dssp T--------------TEEEEECTTSHHHHSSTTHHHHH---TTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEE
T ss_pred C--------------CCEEEEcCccchhhhhchHHHHH---hCCcEEEEecCCCCeEcHHHHHHHhhhcchhhccCCceE
Confidence 3 78899999898876544 3322 1 4677777654 8899998 88641 125789
Q ss_pred EEEcCCCCCCCCc---cCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc-cEE
Q 019931 256 VVTDSLFSMDGDF---APMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG-GFI 331 (334)
Q Consensus 256 Vv~e~v~n~~G~~---~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G-G~i 331 (334)
|++++++| +|.+ .++++|+++|++||++||+|++|..+.+...|... ..+++..++|+++.|+||+.+..| |++
T Consensus 145 v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~~~~~~~~~d~~~~s~sK~g~~~G~g~~ 222 (356)
T 1v72_A 145 VSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP-AEMTWKAGVDALSFGATKNGVLAAEAIV 222 (356)
T ss_dssp EEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT-TTTTGGGTCCEEEECCGGGTCSSCEEEE
T ss_pred EEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH-HHhhhhhcCCEEEEecccCCCcCccEEE
Confidence 99998876 9984 45889999999999999999999854221111111 112222356888899999944456 587
Q ss_pred ee
Q 019931 332 AC 333 (334)
Q Consensus 332 ~~ 333 (334)
++
T Consensus 223 ~~ 224 (356)
T 1v72_A 223 LF 224 (356)
T ss_dssp ES
T ss_pred EE
Confidence 65
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-19 Score=171.27 Aligned_cols=190 Identities=20% Similarity=0.200 Sum_probs=142.7
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC---cEEEeccHHHHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE---DCLLCPTGFAANMAVIVAV 185 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e---~alv~~sG~~An~~ai~al 185 (334)
+.|++..+.. ..+|.+++++.++.... +.....+..+++++.+++++|.+ .++++++|++|+..++.++
T Consensus 34 ~~~l~~~~~~----~~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~ 105 (393)
T 1vjo_A 34 SRLLLGPGPS----NAHPSVLQAMNVSPVGH----LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANA 105 (393)
T ss_dssp CCEECSSSCC----CCCHHHHHHHSSCCCCT----TSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH
T ss_pred cceeccCCCC----CCCHHHHHHHhcccccc----cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhc
Confidence 4566644332 35799999887654321 11113467889999999999975 5778899999999999988
Q ss_pred hhhhhhccCCCccCCCCCeEEEEcCCCchh--hHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEE
Q 019931 186 GNIASLLAGDEKSFKDEKIAIFSDALNHAS--IIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVT 258 (334)
Q Consensus 186 ~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s--~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~ 258 (334)
+.+ +|.|++..+.|.+ +...++.. |.+++.++. .|+++|++.+++. ++++|++
T Consensus 106 ~~~--------------gd~Vl~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~l~~~--~~~~v~~ 165 (393)
T 1vjo_A 106 VEP--------------GDVVLIGVAGYFGNRLVDMAGRY----GADVRTISKPWGEVFSLEELRTALETH--RPAILAL 165 (393)
T ss_dssp CCT--------------TCEEEEEESSHHHHHHHHHHHHT----TCEEEEEECCTTCCCCHHHHHHHHHHH--CCSEEEE
T ss_pred cCC--------------CCEEEEEcCChhHHHHHHHHHHc----CCceEEEecCCCCCCCHHHHHHHHhhC--CceEEEE
Confidence 654 6778877777777 66655555 788888873 5899999999752 5678999
Q ss_pred cCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc--cEEeeC
Q 019931 259 DSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG--GFIACR 334 (334)
Q Consensus 259 e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G--G~i~~~ 334 (334)
++++|++|.+.|+++|.++|++||++||+||+|++|.. ... .. ..++|++++|+||++++.| |+++++
T Consensus 166 ~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~---~~~----~~-~~~~di~~~s~sK~l~~~~~~G~l~~~ 235 (393)
T 1vjo_A 166 VHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGV---PIF----LD-AWGVDLAYSCSQKGLGCSPGASPFTMS 235 (393)
T ss_dssp ESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTS---CCC----TT-TTTCSEEECCSSSTTCSCSSCEEEEEC
T ss_pred eccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCc---CCc----cc-ccCccEEEEcCcccccCCCceEEEEEC
Confidence 99999999999999999999999999999999995432 111 11 1356899999999997654 777653
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=178.00 Aligned_cols=198 Identities=19% Similarity=0.168 Sum_probs=139.3
Q ss_pred eEEEeec-CccCCCCCCHHHHHHHHH-----hcCCCCccccccCchHHH--HHHH-HHHHhHhCCCcEEE-eccHHHHHH
Q 019931 110 RLLLFSG-NDYLGLSSHPTIAKAAAR-----HGMGPRGSALICGYTNYH--RLLE-SCLADLKKKEDCLL-CPTGFAANM 179 (334)
Q Consensus 110 ~~l~f~s-n~yLgl~~~p~v~~a~~~-----~g~g~~~sr~~~G~~~~~--~~LE-~~La~~~g~e~alv-~~sG~~An~ 179 (334)
+.|++.+ .+++ +|+|++++.+ |..|..+++.+.|..... +++. +++++++|.+.+.+ ++||++||.
T Consensus 46 ~~i~l~~~~~~~----~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~ 121 (447)
T 3h7f_A 46 DTLEMIASENFV----PRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANA 121 (447)
T ss_dssp HSEECCTTCCCC----CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH
T ss_pred CceeEecCCCCC----CHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHH
Confidence 4456544 4554 9999997743 444555666666654443 4455 99999999998877 899999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchh-hHHHHHHhhhcCCcEEEEee------CCCHHHHHHHHhcCCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHAS-IIDGIRIAERTKMVEVFVYK------HCDMSHLKTLLSCCTMR 252 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s-~~~g~~ls~~~~g~~v~~~~------~~D~~~Le~~l~~~~~~ 252 (334)
.++.+++++ ||.|++..+.|.+ +..+..+........++.++ +.|+++|++++++. +
T Consensus 122 ~a~~~~~~~--------------Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~--~ 185 (447)
T 3h7f_A 122 AVLHALMSP--------------GERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEF--R 185 (447)
T ss_dssp HHHHHHCCT--------------TCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHH--C
T ss_pred HHHHHhcCC--------------CCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhc--C
Confidence 999988765 7888888887766 32222111101134555554 35899999999642 4
Q ss_pred cEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc-CCccEE
Q 019931 253 KKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG-CQGGFI 331 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G-~~GG~i 331 (334)
+++|++.++.++.+. |+++|+++|++||++||+||+|..|+... |. +.+..+++||++.|+||+|+ ..|||+
T Consensus 186 ~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~-g~----~~~~~~~~di~~~s~sK~l~G~~gG~i 258 (447)
T 3h7f_A 186 PKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAA-GL----HPSPVPHADVVSTTVHKTLGGGRSGLI 258 (447)
T ss_dssp CSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHT-TS----SCCSTTTCSEEEEESSGGGCCCSCEEE
T ss_pred CeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcC-CC----CCCCCCCCcEEEecCCcCCCCCCeEEE
Confidence 678877666665443 99999999999999999999998775421 21 22233567899999999996 578998
Q ss_pred eeC
Q 019931 332 ACR 334 (334)
Q Consensus 332 ~~~ 334 (334)
+++
T Consensus 259 ~~~ 261 (447)
T 3h7f_A 259 VGK 261 (447)
T ss_dssp EEC
T ss_pred EEC
Confidence 864
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.8e-19 Score=171.37 Aligned_cols=197 Identities=18% Similarity=0.187 Sum_probs=133.1
Q ss_pred eEEEe-ecCccCCCCCCHHHHHHHHHh-----cCCCCccccccCchHHHHHHHH----HHHhHhCCCcE-EEeccHHHHH
Q 019931 110 RLLLF-SGNDYLGLSSHPTIAKAAARH-----GMGPRGSALICGYTNYHRLLES----CLADLKKKEDC-LLCPTGFAAN 178 (334)
Q Consensus 110 ~~l~f-~sn~yLgl~~~p~v~~a~~~~-----g~g~~~sr~~~G~~~~~~~LE~----~La~~~g~e~a-lv~~sG~~An 178 (334)
+.+++ ++++|+ +|.|++++.+. +.+..+++.+.|. ..+.++|+ ++++++|.+.. +++++|++|+
T Consensus 26 ~~i~l~~~~~~~----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~ 100 (417)
T 3n0l_A 26 EGLEMIASENFT----LPEVMEVMGSILTNKYAEGYPGKRYYGGC-EFVDEIETLAIERCKKLFNCKFANVQPNSGSQAN 100 (417)
T ss_dssp HSEECCTTCCCC----CHHHHHHHTBGGGGCCCCEETTEESSSCC-HHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred cCeeeecccCCC----CHHHHHHHhhhhhccccccCCCccccccc-hHHHHHHHHHHHHHHHHhCCCCcceEeccHHHHH
Confidence 34554 556665 89999987543 2333444445444 55566665 88889998876 7789999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHH-HHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCC
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIID-GIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMR 252 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~-g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~ 252 (334)
..++.+++++ ||.|++..+.|.+... +..+.....+..++.++. .|+++|++++++. +
T Consensus 101 ~~~~~~~~~~--------------gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~--~ 164 (417)
T 3n0l_A 101 QGVYAALINP--------------GDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE--K 164 (417)
T ss_dssp HHHHHHHSCT--------------TCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHH--C
T ss_pred HHHHHHhcCC--------------CCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhc--C
Confidence 9999988764 7888888888766433 212111112445566654 4899999999742 5
Q ss_pred cEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc-CCccEE
Q 019931 253 KKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG-CQGGFI 331 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G-~~GG~i 331 (334)
+++|++.++++ |.+.|+++|.++|++||++||+|++|..|.... +. +....+.+||+++|+||+|+ ..|||+
T Consensus 165 ~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~----~~~~~~~~di~~~s~sK~l~g~~~G~~ 237 (417)
T 3n0l_A 165 PKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVA-GE----HPSPFPYAHVVSSTTHKTLRGPRGGII 237 (417)
T ss_dssp CSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT-TS----SCCCTTTCSEEEEESSTTTCSCSCEEE
T ss_pred CeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhc-cc----CCCccccceEEEeeCccccCCCCeeEE
Confidence 77887766554 889999999999999999999999998776532 11 11222357899999999994 468998
Q ss_pred eeC
Q 019931 332 ACR 334 (334)
Q Consensus 332 ~~~ 334 (334)
+++
T Consensus 238 ~~~ 240 (417)
T 3n0l_A 238 MTN 240 (417)
T ss_dssp EES
T ss_pred EEC
Confidence 874
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.3e-19 Score=164.25 Aligned_cols=187 Identities=14% Similarity=0.084 Sum_probs=139.8
Q ss_pred eeEEEeecC-ccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHH
Q 019931 109 KRLLLFSGN-DYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAV 185 (334)
Q Consensus 109 ~~~l~f~sn-~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al 185 (334)
+++|+|++| ++++ .+|.+++++.+...+...+ . .+...+|+++++++++.+ .+++++++++++..++.++
T Consensus 16 ~~~i~l~~n~~~~~--~~~~v~~a~~~~~~~~~~y----~-~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~ 88 (337)
T 3p1t_A 16 AQAVCLAFNENPEA--VEPRVQAAIAAAAARINRY----P-FDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF 88 (337)
T ss_dssp CCCEECSSCCCCSC--CCHHHHHHHHHHGGGTTSC----C-TTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS
T ss_pred CCceEeeCCCCCCC--CCHHHHHHHHHhhhhhccC----C-CCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc
Confidence 779999999 5555 5799999887764432222 1 355689999999999975 4666677777888777765
Q ss_pred hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcC
Q 019931 186 GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDS 260 (334)
Q Consensus 186 ~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~ 260 (334)
+ ||.|+++.+.|.++...++.. |.+++.++.+ |+++|+++ .++++|++++
T Consensus 89 --~--------------gd~vl~~~p~~~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~-----~~~~~v~i~~ 143 (337)
T 3p1t_A 89 --S--------------SMRFVTAWPGFDGYRARIAVS----GLRHFEIGLTDDLLLDPNDLAQV-----SRDDCVVLAN 143 (337)
T ss_dssp --T--------------TSEEEEESSSCSHHHHHHTTS----CCEEEEECBCTTSSBCHHHHTTC-----CTTEEEEEES
T ss_pred --C--------------CCeEEEeCCCcHHHHHHHHHc----CCEEEEecCCCCCCCCHHHHHhh-----cCCCEEEEeC
Confidence 4 678888888888887777655 8888888743 67776654 2678999999
Q ss_pred CCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 261 LFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 261 v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
++||+|.+.|+++|.++|+++++ +|+||+|+. ++..+... .. ..+.+|+++||||.||+.| ||++++
T Consensus 144 p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~--~~~~~~~~---~~-~~~~~i~~~S~sK~~g~~G~r~G~~~~~ 213 (337)
T 3p1t_A 144 PSNPTGQALSAGELDQLRQRAGK-LLIDETYVD--YSSFRARG---LA-YGENELVFRSFSKSYGLAGLRLGALFGP 213 (337)
T ss_dssp SCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGG--GSSCSSSC---CC-CBTTEEEEEESSSTTCCTTTCCEEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHhCCc-EEEECCChh--hccccccc---cc-cCCCEEEEeeCchhccCcchheEEEEeC
Confidence 99999999999999999999997 666999985 32222111 11 1345799999999998666 888764
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-21 Score=187.88 Aligned_cols=202 Identities=16% Similarity=0.147 Sum_probs=145.1
Q ss_pred hcccce--eEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHh----C----CCcEEEecc
Q 019931 104 FARQFK--RLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLK----K----KEDCLLCPT 173 (334)
Q Consensus 104 ~~~~g~--~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~----g----~e~alv~~s 173 (334)
++.+|+ +++||+++++ ++..+|.+++++.+.-.. . ..++.+...++++++++++ | .+.++++++
T Consensus 24 ~d~~g~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~-~----~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~g 97 (392)
T 3b1d_A 24 WKETETDPQLLPAWIADM-DFEVMPEVKQAIHDYAEQ-L----VYGYTYASDELLQAVLDWEKSEHQYSFDKEDIVFVEG 97 (392)
Confidence 455566 9999999985 888899999987654221 0 1112222566777777754 3 356777788
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC--------CCHHHHHHH
Q 019931 174 GFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH--------CDMSHLKTL 245 (334)
Q Consensus 174 G~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~--------~D~~~Le~~ 245 (334)
|++|+..+++++..+ +|.|++..+.|.+....++.. +.+++.++. .|+++|+++
T Consensus 98 ~~~a~~~~~~~~~~~--------------gd~vl~~~p~~~~~~~~~~~~----g~~~~~~~~~~~~g~~~~d~~~l~~~ 159 (392)
T 3b1d_A 98 VVPAISIAIQAFTKE--------------GEAVLINSPVYPPFARSVRLN----NRKLVSNSLKEENGLFQIDFEQLEND 159 (392)
Confidence 899999999988764 778888888887777766655 666666654 367888888
Q ss_pred HhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC---CCccEEEec
Q 019931 246 LSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE---RDVDICVGT 319 (334)
Q Consensus 246 l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~---~~~Div~~S 319 (334)
+++ .++++|++++++||+|.+.| +++|+++|++||++||+||+|+...++ |.+......+. .+.+++++|
T Consensus 160 l~~--~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~i~~~s 235 (392)
T 3b1d_A 160 IVE--NDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLF--GHEHVSFNTVSPDFKDFALVLSS 235 (392)
Confidence 763 25778888999999998876 889999999999999999999976553 22222222221 234688999
Q ss_pred CcccccCCc---cEEee
Q 019931 320 LSKAAGCQG---GFIAC 333 (334)
Q Consensus 320 lsKa~G~~G---G~i~~ 333 (334)
|||+||..| ||+++
T Consensus 236 ~sK~~~~~G~r~G~~~~ 252 (392)
T 3b1d_A 236 ATKTFNIAGTKNSYAII 252 (392)
Confidence 999998666 87765
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-19 Score=168.34 Aligned_cols=196 Identities=17% Similarity=0.125 Sum_probs=138.9
Q ss_pred EEeecCccCCCCCCHHHHHHHHHhcC-----CCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHH
Q 019931 112 LLFSGNDYLGLSSHPTIAKAAARHGM-----GPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVA 184 (334)
Q Consensus 112 l~f~sn~yLgl~~~p~v~~a~~~~g~-----g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~a 184 (334)
++|..+. .|. .+|.+++++.++-. +..+++.+....+...+++++|++++|.+ .++++++|++|+..++.+
T Consensus 18 i~l~~~~-~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~ 95 (390)
T 1elu_A 18 TYFNFGG-QGI-LPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWG 95 (390)
T ss_dssp EECCTTT-CCC-CCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHH
T ss_pred EEecCCc-cCC-CCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhC
Confidence 4454554 343 56788887654321 11111112211356789999999999975 688889999999999998
Q ss_pred H-hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCCcEEE
Q 019931 185 V-GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMRKKVV 256 (334)
Q Consensus 185 l-~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~~~lV 256 (334)
+ .++ +|.|++....|.+....+.......|++++.++.+ |+++|++.+++ ++++|
T Consensus 96 ~~~~~--------------gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~---~~~~v 158 (390)
T 1elu_A 96 LDWHQ--------------GDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP---KTRLV 158 (390)
T ss_dssp SCCCT--------------TCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT---TEEEE
T ss_pred CCCCC--------------CCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC---CceEE
Confidence 7 543 78888888888887654321101117888888752 56777776653 78999
Q ss_pred EEcCCCCCCCCccCHHHHHHHHH----HcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcc-cccCCc-cE
Q 019931 257 VTDSLFSMDGDFAPMVELVKLRR----KYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSK-AAGCQG-GF 330 (334)
Q Consensus 257 v~e~v~n~~G~~~pL~~L~ela~----k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsK-a~G~~G-G~ 330 (334)
++++++|++|.+.|+++|.++|+ +||++||+|++|+.|... ..+ . ..++|+++.|++| .+|+.| |+
T Consensus 159 ~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~---~~~----~-~~~~d~~~~s~~K~~~~~~g~G~ 230 (390)
T 1elu_A 159 ILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP---LDF----S-RLEVDYYAFTGHKWFAGPAGVGG 230 (390)
T ss_dssp EEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBC---CCT----T-TSCCSEEEEESSSTTCCCTTCEE
T ss_pred EEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcC---CCh----h-hcCCCEEEccccccccCCCceEE
Confidence 99999999999999999999999 999999999999865321 111 0 1346899999999 567777 88
Q ss_pred EeeC
Q 019931 331 IACR 334 (334)
Q Consensus 331 i~~~ 334 (334)
++++
T Consensus 231 ~~~~ 234 (390)
T 1elu_A 231 LYIH 234 (390)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7763
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=172.25 Aligned_cols=197 Identities=18% Similarity=0.210 Sum_probs=126.5
Q ss_pred EEEeecCccCCCCCCHHHHHHHHHh-----cCCCCccccccCch---HHHHHHHHHHHhHhCCCcEE-EeccHHHHHHHH
Q 019931 111 LLLFSGNDYLGLSSHPTIAKAAARH-----GMGPRGSALICGYT---NYHRLLESCLADLKKKEDCL-LCPTGFAANMAV 181 (334)
Q Consensus 111 ~l~f~sn~yLgl~~~p~v~~a~~~~-----g~g~~~sr~~~G~~---~~~~~LE~~La~~~g~e~al-v~~sG~~An~~a 181 (334)
+..+++++| .||.|++++.+. +.|.++++.+.+.. ...+.+++++++++|.+... ++++|++|+..+
T Consensus 33 ~~~~~~~n~----~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a 108 (420)
T 3gbx_A 33 IELIASENY----TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAV 108 (420)
T ss_dssp EECCTTCCC----CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHH
T ss_pred eeeeccCCC----CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHH
Confidence 445677777 499999987543 22444444433322 22334557889999987764 479999999999
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhH-HHHHHhhhcCCcEEEEee-----CCCHHHHHHHHhcCCCCcEE
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASII-DGIRIAERTKMVEVFVYK-----HCDMSHLKTLLSCCTMRKKV 255 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~-~g~~ls~~~~g~~v~~~~-----~~D~~~Le~~l~~~~~~~~l 255 (334)
+.+++++ ||.|++..+.|.+.. .+..+.....+...+.++ ..|+++|++++++. ++++
T Consensus 109 ~~~~~~~--------------gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~--~~~~ 172 (420)
T 3gbx_A 109 YTALLQP--------------GDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEH--KPKM 172 (420)
T ss_dssp HHHHCCT--------------TCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHH--CCSE
T ss_pred HHHhcCC--------------CCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhc--CCeE
Confidence 9988764 788888888887732 333221111123444443 25999999999752 4788
Q ss_pred EEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc-cCCccEEeeC
Q 019931 256 VVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQGGFIACR 334 (334)
Q Consensus 256 Vv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~-G~~GG~i~~~ 334 (334)
|+++++++ |...|+++|+++|++||++||+||+|+.|.++. +. +......+||+++|+||+| |+.||+++++
T Consensus 173 v~~~~~~~--~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~-~~----~~~~~~~~di~~~s~sK~~~g~~gg~~~~~ 245 (420)
T 3gbx_A 173 IIGGFSAY--SGVVDWAKMREIADSIGAYLFVDMAHVAGLIAA-GV----YPNPVPHAHVVTTTTHKTLAGPRGGLILAK 245 (420)
T ss_dssp EEECCTTC--CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHT-TS----SCCSTTTSSEEEEESSGGGCSCSCEEEEES
T ss_pred EEEecCcc--CCccCHHHHHHHHHHcCCEEEEECCcchhceec-cc----CCcccccCCEEEeecccCCCCCCceEEEEc
Confidence 88876555 458899999999999999999999998776532 21 1222334789999999999 5679998874
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=8e-19 Score=174.29 Aligned_cols=195 Identities=17% Similarity=0.127 Sum_probs=140.9
Q ss_pred eEEEeecC-ccCCCCCCHHHHHHHHHh----c-CCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHH
Q 019931 110 RLLLFSGN-DYLGLSSHPTIAKAAARH----G-MGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIV 183 (334)
Q Consensus 110 ~~l~f~sn-~yLgl~~~p~v~~a~~~~----g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~ 183 (334)
+++++... + ..+..+|.|.+++..+ . .+...+. ..| .+..+++++++++++|.++++++++|++|+..++.
T Consensus 90 ~~i~l~~g~~-~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~-~~g-~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~l~ 166 (464)
T 1ibj_A 90 LLVNLDNKFD-PFDAMSTPLYQTATFKQPSAIENGPYDYT-RSG-NPTRDALESLLAKLDKADRAFCFTSGMAALSAVTH 166 (464)
T ss_dssp HHTCCCCSSC-TTCCSSCCCCCCSBCCCSSSSCCCSCSBT-TTC-CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHT
T ss_pred eEEECCCCCC-CCCCCCccHHhhhhhhhhcccccCCcccc-CCC-CHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH
Confidence 34555443 3 2344556566644321 1 1222222 234 35789999999999999999999999999887764
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCC
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFS 263 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n 263 (334)
+++ +||.|++....|.++...+.......|++++.++.+|+++|++++++ ++++|++++++|
T Consensus 167 -~~~--------------~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~---~tk~v~l~~p~N 228 (464)
T 1ibj_A 167 -LIK--------------NGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGP---QTKLVWLESPTN 228 (464)
T ss_dssp -TSC--------------TTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCS---SEEEEEECSSCT
T ss_pred -HhC--------------CCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhcc---CceEEEEeCCCC
Confidence 444 37778877777877665432211223889999999999999999864 789999999999
Q ss_pred CCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC----CccEEeeC
Q 019931 264 MDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC----QGGFIACR 334 (334)
Q Consensus 264 ~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~----~GG~i~~~ 334 (334)
|+|.+.|+++|+++|++||++||+||+|..|... .. +..++||++.|+||+|++ .+|+++++
T Consensus 229 ptG~v~~l~~i~~la~~~gi~livDea~~~g~~~---~~------~~~~~div~~S~sK~~~g~~Gl~~G~l~~~ 294 (464)
T 1ibj_A 229 PRQQISDIRKISEMAHAQGALVLVDNSIMSPVLS---RP------LELGADIVMHSATKFIAGHSDVMAGVLAVK 294 (464)
T ss_dssp TTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTC---CG------GGTTCSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred CCCEeecHHHHHHHHHHcCCEEEEECCCcccccC---Ch------hhcCCEEEEECCcccccCCCCCcEEEEEEC
Confidence 9999999999999999999999999999875321 01 112478999999999975 35887763
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-19 Score=167.20 Aligned_cols=189 Identities=15% Similarity=0.136 Sum_probs=138.0
Q ss_pred eEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC----cEEEeccHHHHHHHHHHHH
Q 019931 110 RLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE----DCLLCPTGFAANMAVIVAV 185 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e----~alv~~sG~~An~~ai~al 185 (334)
++++|..+- + ..+|+|++++.+. .+ ++...-..+...++++++++++|.+ .++++++|++|+..++.++
T Consensus 4 ~~~~~~~gp-~--~~~~~v~~a~~~~-~~---~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~ 76 (366)
T 1m32_A 4 NYLLLTPGP-L--TTSRTVKEAMLFD-SC---TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA 76 (366)
T ss_dssp -CEECSSSS-C--CCCHHHHHTTCCC-CC---TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS
T ss_pred ccccccCCC-c--CCCHHHHHHHhhh-hc---CCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHh
Confidence 467887773 2 3789999987653 11 1110000155689999999999943 4788899999999999987
Q ss_pred hhhhhhccCCCccCCCCCe-EEEEcCCCchh-hHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEE
Q 019931 186 GNIASLLAGDEKSFKDEKI-AIFSDALNHAS-IIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVT 258 (334)
Q Consensus 186 ~~~~~~~~~~~~~~~~~gd-~Vl~d~~~H~s-~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~ 258 (334)
..+ +| +|+.+..+|.+ +...+... |.+++.++. .|+++|++++++. .++++|++
T Consensus 77 ~~~--------------gd~vi~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~ 137 (366)
T 1m32_A 77 LGP--------------QDKVLIVSNGAYGARMVEMAGLM----GIAHHAYDCGEVARPDVQAIDAILNAD-PTISHIAM 137 (366)
T ss_dssp CCT--------------TCCEEEEESSHHHHHHHHHHHHH----TCCEEEEECCTTSCCCHHHHHHHHHHC-TTCCEEEE
T ss_pred cCC--------------CCeEEEEeCCCccHHHHHHHHHh----CCceEEEeCCCCCCCCHHHHHHHHhcC-CCeEEEEE
Confidence 654 44 55566678876 33344434 677776663 5899999999863 24788888
Q ss_pred cCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccc-cCCc-cEEee
Q 019931 259 DSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAA-GCQG-GFIAC 333 (334)
Q Consensus 259 e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~-G~~G-G~i~~ 333 (334)
.+++||+|.+.|+++|.++|++||++||+|++|+.|... +++. .++|++++|+||++ |+.| |++++
T Consensus 138 ~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~---------~~~~~~~~di~~~s~~K~~~~~~g~G~~~~ 206 (366)
T 1m32_A 138 VHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIP---------MDIAALHIDYLISSANKCIQGVPGFAFVIA 206 (366)
T ss_dssp ESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSC---------CCTTTTTCSEEEEESSSTTCCCSSEEEEEE
T ss_pred ecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcC---------ccccccCccEEEecCcccccCCCceEEEEE
Confidence 899999999999999999999999999999999865431 1221 24689999999988 6567 88875
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-19 Score=169.26 Aligned_cols=177 Identities=15% Similarity=0.111 Sum_probs=133.0
Q ss_pred CCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCc----EEEeccHHHHHHHHHHHHhhhhhhccCCCccC
Q 019931 124 SHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKED----CLLCPTGFAANMAVIVAVGNIASLLAGDEKSF 199 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~----alv~~sG~~An~~ai~al~~~~~~~~~~~~~~ 199 (334)
.+|++++++.++..... .....+...++++++++++|.+. ++++++|++|+. ++.++.++
T Consensus 13 ~~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~----------- 76 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGFT----SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKP----------- 76 (384)
T ss_dssp CCHHHHHHTTCCSCCTT----SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCT-----------
T ss_pred CCHHHHHHhhccccccc----cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCC-----------
Confidence 47889888876543221 12225677899999999999765 788899999999 88776654
Q ss_pred CCCCeEEEEcCCCchhh--HHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHH
Q 019931 200 KDEKIAIFSDALNHASI--IDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMV 272 (334)
Q Consensus 200 ~~~gd~Vl~d~~~H~s~--~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~ 272 (334)
+|.|++....|.+. ...+.. .|.+++.++.+ |+++|++++++. ++++|++++++|++|.+.|++
T Consensus 77 ---gd~vi~~~~~~~~~~~~~~~~~----~g~~~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~l~ 147 (384)
T 3zrp_A 77 ---NDKILVVSNGVFGDRWEQIFKR----YPVNVKVLRPSPGDYVKPGEVEEEVRKS--EYKLVALTHVETSTGVREPVK 147 (384)
T ss_dssp ---TCEEEEECSSHHHHHHHHHHTT----SSCEEEEECCSTTCCCCHHHHHHHHHHS--CEEEEEEESEETTTTEECCHH
T ss_pred ---CCEEEEecCCcchHHHHHHHHH----cCCcEEEecCCCCCCCCHHHHHHHHHhC--CCcEEEEeCCCCCCceECcHH
Confidence 77777766666542 222222 27888888754 899999999862 589999999999999999999
Q ss_pred HHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCccccc-CCc-cEEeeC
Q 019931 273 ELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAG-CQG-GFIACR 334 (334)
Q Consensus 273 ~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G-~~G-G~i~~~ 334 (334)
+|.++|++||++||+|++|+.+... .++. .++|+++.|++|+++ +.| |+++++
T Consensus 148 ~i~~l~~~~~~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~ 203 (384)
T 3zrp_A 148 DVINKIRKYVELIVVDGVSSVGAEE---------VKAEEWNVDVYLTASQKALGSAAGLGLLLLS 203 (384)
T ss_dssp HHHHHHGGGEEEEEEECTTTTTTSC---------CCTTTTTCSEEEEETTSTTCCCSSEEEEEEC
T ss_pred HHHHHHHhcCCEEEEECcccccCcc---------ccccccCCCEEEecCcccccCCCceEEEEEC
Confidence 9999999999999999999876431 1121 246899999999995 455 777653
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=164.42 Aligned_cols=200 Identities=18% Similarity=0.159 Sum_probs=147.1
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~ 186 (334)
..+++|.+ ++.+ ..+|.+++++.+.-.. +....|..+..+++++++++++|.+ .++++++|++|+..++.++.
T Consensus 13 p~~i~l~~-~~~~-~~~~~v~~a~~~~~~~---~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~ 87 (359)
T 1svv_A 13 PKPYSFVN-DYSV-GMHPKILDLMARDNMT---QHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL 87 (359)
T ss_dssp --CEECSC-SCSS-CCCHHHHHHHHHHTTC---CCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC
T ss_pred CeeEEecC-CCcC-CCCHHHHHHHHHHHhh---ccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHh
Confidence 34788888 5677 5789999988776443 2223466788899999999999864 47888999999999999886
Q ss_pred hhhhhccCCCccCCCCCeEEEEcCCCchhhHHH--HHHhhhcCCcEEEEeeCC----CHHHHHHHHhcC----CCCcEEE
Q 019931 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDG--IRIAERTKMVEVFVYKHC----DMSHLKTLLSCC----TMRKKVV 256 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g--~~ls~~~~g~~v~~~~~~----D~~~Le~~l~~~----~~~~~lV 256 (334)
++ ||.|++..+.|.+.... ++.. |.+++.++.+ |+++|++++++. ..++++|
T Consensus 88 ~~--------------gd~vl~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v 149 (359)
T 1svv_A 88 RP--------------WEAVIATQLGHISTHETGAIEAT----GHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLV 149 (359)
T ss_dssp CT--------------TEEEEEETTSHHHHSSTTHHHHT----TCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEE
T ss_pred CC--------------CCEEEEcccchHHHHHHHHHhcC----CCeeEEEeCCCCeecHHHHHHHHHHHHhccCCCceEE
Confidence 54 78899888888887653 4444 7888888765 599999999762 1137889
Q ss_pred EEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc-cEEe
Q 019931 257 VTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG-GFIA 332 (334)
Q Consensus 257 v~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G-G~i~ 332 (334)
+++++ |++|.+.| +++|+++|++||++||+||+|....+|..+... ....+....|+++.|++|..+..| |+++
T Consensus 150 ~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~d~~~~s~~K~g~~~~~g~l~ 227 (359)
T 1svv_A 150 YISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDL-TLADIARLTDMFYIGATKAGGMFGEALII 227 (359)
T ss_dssp EEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCC-CHHHHHHHCSEEEEECTTTTCSSCEEEEE
T ss_pred EEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcch-hhhhhhhcCCEEEEecccCCCCCceEEEE
Confidence 88888 68999988 889999999999999999999321123222111 111111235789999999877666 7776
Q ss_pred e
Q 019931 333 C 333 (334)
Q Consensus 333 ~ 333 (334)
+
T Consensus 228 ~ 228 (359)
T 1svv_A 228 L 228 (359)
T ss_dssp C
T ss_pred E
Confidence 5
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-19 Score=179.64 Aligned_cols=195 Identities=19% Similarity=0.178 Sum_probs=138.7
Q ss_pred eEEEee-cCccCCCCCCHHHHHHHHH-----hcCCCCccccccCchHHHHHHH----HHHHhHhCCCc-----EEEeccH
Q 019931 110 RLLLFS-GNDYLGLSSHPTIAKAAAR-----HGMGPRGSALICGYTNYHRLLE----SCLADLKKKED-----CLLCPTG 174 (334)
Q Consensus 110 ~~l~f~-sn~yLgl~~~p~v~~a~~~-----~g~g~~~sr~~~G~~~~~~~LE----~~La~~~g~e~-----alv~~sG 174 (334)
+.|++. |.++ .+|.|++++.+ |..|..+++.+.|. +...++| +++++++|.+. .++++||
T Consensus 45 ~~i~L~a~e~~----~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~-~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sG 119 (483)
T 1rv3_A 45 VGLELIASENF----ASRAVLEALGSCLNNKYSLGYPGQRYYGGT-EHIDELETLCQKRALQAYGLDPQCWGVNVQPYSG 119 (483)
T ss_dssp SSEECCTTCCC----CCHHHHHHHTSGGGTCCCCEETTEESSSCC-HHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSH
T ss_pred cCeEEEcCCCC----CCHHHHHHHHHHHhccCcccCCCccccCcc-hhHHHHHHHHHHHHHHHhCCCcccCceEEEECCc
Confidence 345653 3343 48999997754 33344455555543 4445555 88899999763 3788999
Q ss_pred HHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHH--------HHHHhhhcCCcEEEEeeC------CCHH
Q 019931 175 FAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIID--------GIRIAERTKMVEVFVYKH------CDMS 240 (334)
Q Consensus 175 ~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~--------g~~ls~~~~g~~v~~~~~------~D~~ 240 (334)
++||..++.+++++ ||.|++..+.|.+... ++.++.. ..+++.++. .|++
T Consensus 120 s~an~~~~~all~p--------------GD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~--~~~~v~~~~~~~~~~iD~d 183 (483)
T 1rv3_A 120 SPANFAVYTALVEP--------------HGRIMGLDLPDGGHLTHGFMTDKKKISATSI--FFESMAYKVNPDTGYIDYD 183 (483)
T ss_dssp HHHHHHHHHHHTCT--------------TCEEEEECGGGTCCGGGCCBCSSCBCSHHHH--HSEEEEECBCTTTCSBCHH
T ss_pred HHHHHHHHHHhcCC--------------CCEEEEecCccCcCcchhhhhcccCcccccc--eEEEEECccccCCCcCCHH
Confidence 99999999988765 8889988888877542 2222210 145666632 4899
Q ss_pred HHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecC
Q 019931 241 HLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTL 320 (334)
Q Consensus 241 ~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sl 320 (334)
+|++++++ +++++|++ +++|+. .+.|+++|+++|+++|++||+|+||..|++.. +.. ....+++||++.|+
T Consensus 184 ~le~~i~~--~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~---~~~--~~p~~~~div~~s~ 254 (483)
T 1rv3_A 184 RLEENARL--FHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVA---GVV--PSPFEHCHVVTTTT 254 (483)
T ss_dssp HHHHHHHH--HCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHH---TSS--CCGGGTCSEEEEES
T ss_pred HHHHHHhh--cCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhccccc---CCC--CCCCCCCcEEEecC
Confidence 99999973 26788888 888887 88999999999999999999999999876521 111 11113579999999
Q ss_pred cccc-cCCccEEeeC
Q 019931 321 SKAA-GCQGGFIACR 334 (334)
Q Consensus 321 sKa~-G~~GG~i~~~ 334 (334)
||+| |..||+|+++
T Consensus 255 ~K~l~GprgG~i~~~ 269 (483)
T 1rv3_A 255 HKTLRGCRAGMIFYR 269 (483)
T ss_dssp SGGGCCCSCEEEEEE
T ss_pred cccCCCCCceEEEEc
Confidence 9999 6689999863
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-19 Score=175.34 Aligned_cols=202 Identities=12% Similarity=-0.046 Sum_probs=143.9
Q ss_pred eeEEEeecCccCCCCCCHHH--HHHHHHhc-C-CCCccccccCchHHHHHHHHHHHhHh-----CC--Cc---EEEeccH
Q 019931 109 KRLLLFSGNDYLGLSSHPTI--AKAAARHG-M-GPRGSALICGYTNYHRLLESCLADLK-----KK--ED---CLLCPTG 174 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v--~~a~~~~g-~-g~~~sr~~~G~~~~~~~LE~~La~~~-----g~--e~---alv~~sG 174 (334)
++++||+++++..+..+|.+ ++++.+.- . +..++....| ..+|++++++++ +. +. ++++++|
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g----~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~ 122 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPPQG----IEELRDLWQQKMLRDNPELSIDNMSRPIVTNAL 122 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCTTC----CHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHH
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCCCC----CHHHHHHHHHHHhccCcccCCCccceEEEcCCc
Confidence 56899999986233346666 66543321 1 1111211222 467888888887 54 56 7888899
Q ss_pred HHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHH-hhhcCCcEEEEeeC------CCHHHHHHHHh
Q 019931 175 FAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRI-AERTKMVEVFVYKH------CDMSHLKTLLS 247 (334)
Q Consensus 175 ~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~l-s~~~~g~~v~~~~~------~D~~~Le~~l~ 247 (334)
++|+..++.+++++ ||.|++..+.|......++. . |.+++.++. .|+++|+++++
T Consensus 123 ~~al~~~~~~l~~~--------------gd~Vl~~~p~y~~~~~~~~~~~----g~~~~~~~~~~~~~~~d~~~l~~~l~ 184 (430)
T 2x5f_A 123 THGLSLVGDLFVNQ--------------DDTILLPEHNWGNYKLVFNTRN----GANLQTYPIFDKDGHYTTDSLVEALQ 184 (430)
T ss_dssp HHHHHHHHHHHCCT--------------TCEEEEESSCCTHHHHHHTTTT----CCEEEEECCBCTTSCBCSHHHHHHHH
T ss_pred hHHHHHHHHHHhCC--------------CCEEEEcCCcCccHHHHHHHhc----CCeEEEEeccCccCCcCHHHHHHHHH
Confidence 99999999988764 78888888888887777665 4 788887764 37899999997
Q ss_pred cCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHH-----cCCEEEEecCcccccccCCC-cccc-cccCCCCCc---c
Q 019931 248 CCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRK-----YGFLLVLDDAHGTFVCGKNG-GGVA-EQFNCERDV---D 314 (334)
Q Consensus 248 ~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k-----~ga~LivDeAh~~Gv~G~~G-~g~~-~~~~~~~~~---D 314 (334)
+.++++++|++.+++||+|.+.| +++|+++|++ ||+++|+||+|+.+.++..+ ..+. ...+. .+. +
T Consensus 185 ~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 263 (430)
T 2x5f_A 185 SYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNL-HSNAILP 263 (430)
T ss_dssp HCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTT-CCTTEEE
T ss_pred hcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhc-cCCcceE
Confidence 64446788888999999999988 8899999999 99999999999976554221 1111 11121 234 6
Q ss_pred EEEecCcccccCCc---cEEee
Q 019931 315 ICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 315 iv~~SlsKa~G~~G---G~i~~ 333 (334)
|+++||||+||+.| ||+++
T Consensus 264 i~~~s~sK~~~~~G~riG~~~~ 285 (430)
T 2x5f_A 264 IRLDGATKEFFAWGFRVGFMTF 285 (430)
T ss_dssp EEEEEHHHHTTCGGGCCEEEEE
T ss_pred EEEEecccCCCCCCCCeEEEEE
Confidence 88999999998766 88876
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-19 Score=173.19 Aligned_cols=201 Identities=12% Similarity=0.088 Sum_probs=138.4
Q ss_pred cceeEEEeecCccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHH
Q 019931 107 QFKRLLLFSGNDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAV 185 (334)
Q Consensus 107 ~g~~~l~f~sn~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al 185 (334)
.|+.|+||.++-.. |.|++++.+. ..+.. .++..+...+|+++++++++.+++++++||++||..+++++
T Consensus 41 ~g~~ylD~~~~~~~-----~~v~~a~~~~~~~~~~----~y~~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~ 111 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-----NAMSDHQWAAMITGDE----AYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVL 111 (467)
T ss_dssp GGGCSEECSCSSSC-----CCEEHHHHHHHHTCCC----CSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHH
T ss_pred CCceeeecccCcCC-----HHHHHHHHHHHhhccc----ccccCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHH
Confidence 45788998665322 6666655443 23321 23345667899999999999999999999999999999988
Q ss_pred hh----hhhhccCCCccCCCCCeE---EEEcCCCchhhHHHHHHhhhcCCcEEEEee---------------CCCHHHHH
Q 019931 186 GN----IASLLAGDEKSFKDEKIA---IFSDALNHASIIDGIRIAERTKMVEVFVYK---------------HCDMSHLK 243 (334)
Q Consensus 186 ~~----~~~~~~~~~~~~~~~gd~---Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~---------------~~D~~~Le 243 (334)
.. + ||. |++....|.+....+... +.+++... ..|+++||
T Consensus 112 ~~~~~~~--------------Gd~~~~viv~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 173 (467)
T 1ax4_A 112 LKYKQKE--------------GKAKNPVFISNFHFDTTAAHVELN----GCKAINIVTEKAFDSETYDDWKGDFDIKKLK 173 (467)
T ss_dssp HHHHHHT--------------TCCSSCEEEESSCCHHHHHHHHHT----TCEEEECBCGGGGCTTSCCTTTTCBCHHHHH
T ss_pred HHhhccC--------------CCccceEEEeccccchhhHHHhcc----CCceecccccccccccccCCcccccCHHHHH
Confidence 76 4 453 444444445555555555 66665431 13899999
Q ss_pred HHHhcCC-CCcEEEEEcCCCCCC-CCccC---HHHHHHHHHHcCCEEEEecCccc-ccc-------cCCCccccccc-CC
Q 019931 244 TLLSCCT-MRKKVVVTDSLFSMD-GDFAP---MVELVKLRRKYGFLLVLDDAHGT-FVC-------GKNGGGVAEQF-NC 309 (334)
Q Consensus 244 ~~l~~~~-~~~~lVv~e~v~n~~-G~~~p---L~~L~ela~k~ga~LivDeAh~~-Gv~-------G~~G~g~~~~~-~~ 309 (334)
+++++.+ .++++|++++++|++ |.+.| +++|+++|++||++||+|++|.. +.+ +..|..+.... ..
T Consensus 174 ~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (467)
T 1ax4_A 174 ENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM 253 (467)
T ss_dssp HHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHH
T ss_pred HHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhh
Confidence 9997532 258999999999998 77655 78999999999999999999876 322 22222111100 00
Q ss_pred CCCccEEEecCcccccCC-ccEEeeC
Q 019931 310 ERDVDICVGTLSKAAGCQ-GGFIACR 334 (334)
Q Consensus 310 ~~~~Div~~SlsKa~G~~-GG~i~~~ 334 (334)
...+|+++.|+||++|+. ||+++++
T Consensus 254 ~~~~d~~~~s~sK~~g~~~Gg~~~~~ 279 (467)
T 1ax4_A 254 YKYADALTMSAKKDPLLNIGGLVAIR 279 (467)
T ss_dssp GGGCSEEEEETTSTTCCSSCEEEEES
T ss_pred ccccceEEEeccccCCCCcceEEEeC
Confidence 023578889999999885 8888753
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=169.27 Aligned_cols=209 Identities=15% Similarity=0.104 Sum_probs=145.1
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhc---CCCCcc--ccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHG---MGPRGS--ALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMA 180 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g---~g~~~s--r~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ 180 (334)
+..|+|+.++. ..+|.+++++.++- .+...+ ....+..+...+++++|++++|.+ .++++++|++|+..
T Consensus 18 ~~~~Ld~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 93 (432)
T 3a9z_A 18 RKVYMDYNATT----PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNL 93 (432)
T ss_dssp CCEECBTTTCC----CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHH
T ss_pred CcEEeeCCccC----CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHH
Confidence 35666766654 45899999776532 121111 111123456789999999999974 67888889999999
Q ss_pred HHHHHhh--------hhh-h-ccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC------CCHHHHHH
Q 019931 181 VIVAVGN--------IAS-L-LAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH------CDMSHLKT 244 (334)
Q Consensus 181 ai~al~~--------~~~-~-~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~------~D~~~Le~ 244 (334)
++.++.+ +++ + +...... ..+.|+++...|.++..++.......|.+++.++. .|+++|++
T Consensus 94 ~~~~~~~~~~~~~~~~gd~vl~~~p~y~---~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~ 170 (432)
T 3a9z_A 94 VIHSTVRCFHEQQTLQGRTVDQISPEEG---TRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILA 170 (432)
T ss_dssp HHHHHHHHHHHHHHHC---------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHH
T ss_pred HHHHHHhhhhhccccCCccccccccccc---cCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHH
Confidence 9998752 321 0 0000000 11567888889999877765432223788888775 27888888
Q ss_pred HHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcC----------CEEEEecCcccccccCCCcccccccCCCCCcc
Q 019931 245 LLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYG----------FLLVLDDAHGTFVCGKNGGGVAEQFNCERDVD 314 (334)
Q Consensus 245 ~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~g----------a~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~D 314 (334)
++++ ++++|++++++|++|.+.|+++|.++|+++| ++||+|++|+.|.. ...+. . .++|
T Consensus 171 ~i~~---~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~---~~~~~---~--~~~d 239 (432)
T 3a9z_A 171 AVRP---TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR---RVDVE---D--LGVD 239 (432)
T ss_dssp TCCT---TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS---CCCHH---H--HCCS
T ss_pred hccC---CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCc---ccChh---h--cCCC
Confidence 7753 7899999999999999999999999999999 99999999986521 11111 1 1357
Q ss_pred EEEecCcccccCCccEEeeC
Q 019931 315 ICVGTLSKAAGCQGGFIACR 334 (334)
Q Consensus 315 iv~~SlsKa~G~~GG~i~~~ 334 (334)
+++.|+||.+|...||++++
T Consensus 240 ~~~~s~~K~~g~~~G~~~~~ 259 (432)
T 3a9z_A 240 FLTIVGHKFYGPRIGALYVR 259 (432)
T ss_dssp EEEEEGGGTTCCSCEEEEET
T ss_pred EEEEehhHhcCCcceEEEEc
Confidence 99999999998777888763
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-18 Score=163.45 Aligned_cols=194 Identities=18% Similarity=0.108 Sum_probs=139.8
Q ss_pred ccceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHH
Q 019931 106 RQFKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIV 183 (334)
Q Consensus 106 ~~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~ 183 (334)
.+|+++|||++|+ ..+..+|++++++.+.-..... ++... ..+|+++++++++.+ .++++++|++|+..++.
T Consensus 12 ~~g~~~id~~~~~-~~~~~~~~v~~a~~~~~~~~~~----y~~~~-~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~ 85 (350)
T 3fkd_A 12 PLSSEIVNFSTTV-WTDGDKDHLEKHLVENLNCIRH----YPEPD-AGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQ 85 (350)
T ss_dssp ----CCEECSCCS-CCCSCCHHHHHHHHHTGGGGGS----CCCTT-CHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHH
T ss_pred hccccEEEccCCC-CCCCCCHHHHHHHHHhHhHHhc----CCCCc-HHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHH
Confidence 4568999999985 3555789999988764321111 11112 268999999999864 68888999999999888
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-CCHHHHHHHHhcCCCCcEEEEEcCCC
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-CDMSHLKTLLSCCTMRKKVVVTDSLF 262 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-~D~~~Le~~l~~~~~~~~lVv~e~v~ 262 (334)
++. +|.|++..+.|..+...++.. |++++.++. ++.+.+.. +++++|++++++
T Consensus 86 ~l~----------------gd~Vi~~~p~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~~------~~~~~v~i~~p~ 139 (350)
T 3fkd_A 86 AFR----------------GSRSLIAIPSFAEYEDACRMY----EHEVCFYPSNEDIGEADF------SNMDFCWLCNPN 139 (350)
T ss_dssp HTT----------------TCEEEEEESCCHHHHHHHHHT----TCEEEEEETTSCGGGSCC------TTCSEEEEESSC
T ss_pred HHC----------------CCEEEEeCCCcHHHHHHHHHc----CCeEEEEecCCccccCcc------CCCCEEEEeCCC
Confidence 764 466777778888888777766 899999988 54333321 368888899999
Q ss_pred CCCCCccCHHHHHHHHHHcC-CEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 263 SMDGDFAPMVELVKLRRKYG-FLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 263 n~~G~~~pL~~L~ela~k~g-a~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
||+|.+.|+++|.++++.++ .+||+||+|+... ..+.......+ ..+.+|++.||||++|+.| ||++++
T Consensus 140 nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~--~~~~~~~~~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~~~ 212 (350)
T 3fkd_A 140 NPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFT--TEEVIRPADIK-GRKNLVMVYSFSHAYGIPGLRIGYIVAN 212 (350)
T ss_dssp TTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSC--SSCCCCGGGGT-TCSSEEEEEESHHHHSCGGGCCEEEECC
T ss_pred CCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhc--cCcchhhHHhh-cCCCEEEEecCchhccCcchheEeEEeC
Confidence 99999999999999999886 7999999998643 32332222222 2344689999999998655 888753
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-18 Score=166.62 Aligned_cols=195 Identities=16% Similarity=0.065 Sum_probs=140.0
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC---CCCcc--ccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM---GPRGS--ALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAV 181 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~---g~~~s--r~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~a 181 (334)
..|+|+.++ + ..+|.|++++.++-. +.... +...|..+...++++++++++|.+ .++++++|++++..+
T Consensus 29 ~~yld~~~~---~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~a 104 (416)
T 1qz9_A 29 VIYLDGNSL---G-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKV 104 (416)
T ss_dssp CEECCTTTS---C-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHH
T ss_pred eEeecCCCc---C-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHH
Confidence 667777654 3 457888887765421 21111 112244567789999999999974 677778888888888
Q ss_pred HHHHh------hhhhhccCCCccCCCCCe-EEEEcCCCchhhHHHHHHhhhc--CCcEEEEeeCCCHHHHHHHHhcCCCC
Q 019931 182 IVAVG------NIASLLAGDEKSFKDEKI-AIFSDALNHASIIDGIRIAERT--KMVEVFVYKHCDMSHLKTLLSCCTMR 252 (334)
Q Consensus 182 i~al~------~~~~~~~~~~~~~~~~gd-~Vl~d~~~H~s~~~g~~ls~~~--~g~~v~~~~~~D~~~Le~~l~~~~~~ 252 (334)
+.++. .+ || +|+.+..+|.++...+...... .|++++.++. +++|++++++ +
T Consensus 105 l~~~~~~~~~~~~--------------gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~l~~~i~~---~ 165 (416)
T 1qz9_A 105 LSAALRVQATRSP--------------ERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--PEELPQAIDQ---D 165 (416)
T ss_dssp HHHHHHHHHHHST--------------TCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS--GGGHHHHCST---T
T ss_pred HHhhcccccccCC--------------CCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc--HHHHHHHhCC---C
Confidence 88765 33 44 6778888998876655422111 1678888877 8899988864 7
Q ss_pred cEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc-C-Cc-c
Q 019931 253 KKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG-C-QG-G 329 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G-~-~G-G 329 (334)
+++|++++++|++|.+.|+++|.++|++||++||+|++|++|... ..+ ..+ ++|+++.|++|.++ + .+ |
T Consensus 166 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~---~~~-~~~----~~d~~~~s~~K~l~~g~~~~g 237 (416)
T 1qz9_A 166 TAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVP---VDL-HQA----GADYAIGCTYKYLNGGPGSQA 237 (416)
T ss_dssp EEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC---CCH-HHH----TCSEEEECSSSTTCCCTTCCC
T ss_pred ceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcC---CCh-hhc----CCCEEEecCcccCCCCCCCeE
Confidence 899999999999999999999999999999999999999865321 111 111 36899999999973 3 44 7
Q ss_pred EEeeC
Q 019931 330 FIACR 334 (334)
Q Consensus 330 ~i~~~ 334 (334)
+++++
T Consensus 238 ~l~~~ 242 (416)
T 1qz9_A 238 FVWVS 242 (416)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77653
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.9e-19 Score=167.78 Aligned_cols=175 Identities=17% Similarity=0.106 Sum_probs=134.1
Q ss_pred CHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHH-hhhhhhccCCCccCCCC
Q 019931 125 HPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAV-GNIASLLAGDEKSFKDE 202 (334)
Q Consensus 125 ~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al-~~~~~~~~~~~~~~~~~ 202 (334)
.|++++++.+.- .+. +.++..+...+||+++++++|.++.++++||++|+..++.++ .++
T Consensus 16 ~~~~~~a~~~~l~~~~----~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~~-------------- 77 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQ----WWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGP-------------- 77 (388)
T ss_dssp CHHHHHHHHHHHHTSC----CBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCT--------------
T ss_pred CHHHHHHHHHHHHcCC----eeecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCC--------------
Confidence 388888776542 221 112234667899999999999988999999999999999987 443
Q ss_pred CeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHH
Q 019931 203 KIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVK 276 (334)
Q Consensus 203 gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~e 276 (334)
||.|++..+.|.++...++.. |++++.++.+ |+++|++++++ ++++|+ ++|++|.+.|+++|.+
T Consensus 78 gd~Vi~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~~d~~~l~~~i~~---~~~~v~---~~n~tG~~~~l~~i~~ 147 (388)
T 1b9h_A 78 GTEVIVPAFTFISSSQAAQRL----GAVTVPVDVDAATYNLDPEAVAAAVTP---RTKVIM---PVHMAGLMADMDALAK 147 (388)
T ss_dssp TCEEEEESSSCTHHHHHHHHT----TCEEEEECBCTTTCCBCHHHHHHHCCT---TEEEEC---CBCGGGCCCCHHHHHH
T ss_pred cCEEEECCCccHHHHHHHHHc----CCEEEEEecCCCcCCCCHHHHHHhcCc---CceEEE---EeCCccCcCCHHHHHH
Confidence 788888889999988887766 8888888752 78999988863 678877 7889999999999999
Q ss_pred HHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCc--ccc-cCCccEEeeC
Q 019931 277 LRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLS--KAA-GCQGGFIACR 334 (334)
Q Consensus 277 la~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sls--Ka~-G~~GG~i~~~ 334 (334)
+|++||++||+|++|+.|... .|..+. .+ + |+.+.||| |.+ |..||+++++
T Consensus 148 la~~~~~~li~D~a~~~g~~~-~~~~~~-~~---~--~i~~~S~s~~K~l~g~~~G~~~~~ 201 (388)
T 1b9h_A 148 ISADTGVPLLQDAAHAHGARW-QGKRVG-EL---D--SIATFSFQNGKLMTAGEGGAVVFP 201 (388)
T ss_dssp HHHHHTCCBCEECTTCTTCEE-TTEEGG-GS---S--SCEEEECCTTSSSCSSSCEEEEEC
T ss_pred HHHHcCCEEEEecchhcCCcc-CCeecc-cc---c--ceEEEEccCCCcccCCCeEEEEEC
Confidence 999999999999999987432 222211 11 2 57788888 666 4477888763
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=166.82 Aligned_cols=193 Identities=13% Similarity=0.035 Sum_probs=139.1
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~ 186 (334)
..|+|..+. ...+|.+++++.++.... + .........++++++++++|.+ .++++++|++|+..++.++.
T Consensus 9 ~~yl~~~~~----~~~~~~v~~a~~~~~~~~---~-~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~ 80 (392)
T 2z9v_A 9 PVITLTAGP----VNAYPEVLRGLGRTVLYD---Y-DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLI 80 (392)
T ss_dssp CSEECSSSC----CCCCHHHHHHTTSCCCCT---T-SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHC
T ss_pred cceeecCCC----cCCCHHHHHHHhcccccc---c-cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhc
Confidence 345554432 245799999887654321 1 1223456789999999999964 67777999999999999886
Q ss_pred hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCC
Q 019931 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSL 261 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v 261 (334)
++ ||.|++....|.+.. ...+... .|.+++.++. .|+++|++++++. +++++|+++++
T Consensus 81 ~~--------------gd~Vl~~~~~~~~~~-~~~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~ 143 (392)
T 2z9v_A 81 SP--------------DDVVLNLASGVYGKG-FGYWAKR-YSPHLLEIEVPYNEAIDPQAVADMLKAH-PEITVVSVCHH 143 (392)
T ss_dssp CT--------------TCCEEEEESSHHHHH-HHHHHHH-HCSCEEEEECCTTSCCCHHHHHHHHHHC-TTCCEEEEESE
T ss_pred CC--------------CCEEEEecCCcccHH-HHHHHHH-cCCceEEeeCCCCCCCCHHHHHHHHhcC-CCCcEEEEecc
Confidence 54 677887777777653 2222211 1677777764 4899999999642 26789999999
Q ss_pred CCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc-CCc-cEEeeC
Q 019931 262 FSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG-CQG-GFIACR 334 (334)
Q Consensus 262 ~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G-~~G-G~i~~~ 334 (334)
+|++|.+.|+++|.++|++||+++|+|++|+.|... ..+ .. .++|++++|+||+++ +.| |+++++
T Consensus 144 ~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~---~~~-~~----~~~d~~~~s~sK~~~~~~g~G~l~~~ 210 (392)
T 2z9v_A 144 DTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMK---THP-ED----CKADIYVTGPNKCLGAPPGLTMMGVS 210 (392)
T ss_dssp EGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBS---CCG-GG----GTCSEEEECSSSTTCCCSCCEEEEEC
T ss_pred CCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcc---ccc-cc----ccceEEEecCcccccCCCceeEEEEC
Confidence 999999999999999999999999999999865321 111 11 146899999999764 456 777653
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=166.16 Aligned_cols=177 Identities=16% Similarity=0.147 Sum_probs=134.9
Q ss_pred CCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCc---EEEeccHHHHHHHHHHHHhhhhhhccCCCccCC
Q 019931 124 SHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKED---CLLCPTGFAANMAVIVAVGNIASLLAGDEKSFK 200 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~---alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~ 200 (334)
-+|++++++.+...+.. .........++++++++++|.+. +++++||++|+..++.++.++
T Consensus 24 ~~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~------------ 87 (411)
T 3nnk_A 24 ADPRVLRAMSSQLIGQY----DPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRP------------ 87 (411)
T ss_dssp CCHHHHHHHTSCCCCTT----CHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCT------------
T ss_pred CCHHHHHHhhccccccc----cHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCC------------
Confidence 47999998876432211 12234667899999999999653 345578899999999988764
Q ss_pred CCCeEEEEcCCCchh--hHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHH
Q 019931 201 DEKIAIFSDALNHAS--IIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVE 273 (334)
Q Consensus 201 ~~gd~Vl~d~~~H~s--~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~ 273 (334)
+|.|++....|.+ +...+... +.+++.++.+ |+++|++++++. ++++|++++++|++|.+.|+++
T Consensus 88 --gd~Vl~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~l~~ 159 (411)
T 3nnk_A 88 --GDKVLVPVFGRFGHLLCEIARRC----RAEVHTIEVPWGEVFTPDQVEDAVKRI--RPRLLLTVQGDTSTTMLQPLAE 159 (411)
T ss_dssp --TCEEEEEECSHHHHHHHHHHHHT----TCEEEEEECCTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECCCTT
T ss_pred --CCEEEEecCCchHHHHHHHHHHc----CCeEEEEecCCCCCCCHHHHHHHHhhC--CCeEEEEeCCCCCcceeccHHH
Confidence 7788887777766 55555544 7888888765 899999999752 6789999999999999999999
Q ss_pred HHHHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccc-cCCc-cEEee
Q 019931 274 LVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAA-GCQG-GFIAC 333 (334)
Q Consensus 274 L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~-G~~G-G~i~~ 333 (334)
|.++|++||++||+|++|+.+... +.+ ..++|+++.|++|++ |..| |++++
T Consensus 160 i~~l~~~~~~~li~Dea~~~~~~~---------~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~ 213 (411)
T 3nnk_A 160 LGEICRRYDALFYTDATASLGGNP---------LETDVWGLDAVSAGMQKCLGGPSGTSPITL 213 (411)
T ss_dssp HHHHHHHHTCEEEEECTTTBTTBC---------CCTTTTTCSEEECCSTTTTCCCSSEEEEEE
T ss_pred HHHHHHHcCCEEEEECCcccCCcc---------cchhccCCcEEEecCccccCCCCceEEEEE
Confidence 999999999999999999865331 111 135789999999985 5555 77665
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=165.00 Aligned_cols=182 Identities=14% Similarity=0.062 Sum_probs=134.1
Q ss_pred CCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC---cEEEeccHHHHHHHHHHHHhhhhhhccCCCcc
Q 019931 122 LSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE---DCLLCPTGFAANMAVIVAVGNIASLLAGDEKS 198 (334)
Q Consensus 122 l~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e---~alv~~sG~~An~~ai~al~~~~~~~~~~~~~ 198 (334)
+..+|.+++++.++-.+. ......+...++++++++++|.+ .++++++|++|+..++.++.++
T Consensus 28 ~~~~~~v~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~---------- 93 (393)
T 2huf_A 28 SNAPQRVLDAMSRPILGH----LHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLED---------- 93 (393)
T ss_dssp CCCCHHHHHHTTSCCCCT----TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCT----------
T ss_pred CCCCHHHHHHHHhhhccC----CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCC----------
Confidence 456899999887654331 11112466789999999999975 3566699999999999988654
Q ss_pred CCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHH
Q 019931 199 FKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVE 273 (334)
Q Consensus 199 ~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~ 273 (334)
||.|++....|.+.. ...+.. ..|.+++.++. .|+++|++++++. ++++|++++++|++|.+.|+++
T Consensus 94 ----gd~vl~~~~~~~~~~-~~~~~~-~~g~~~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~l~~ 165 (393)
T 2huf_A 94 ----GDVILIGHTGHWGDR-SADMAT-RYGADVRVVKSKVGQSLSLDEIRDALLIH--KPSVLFLTQGDSSTGVLQGLEG 165 (393)
T ss_dssp ----TCEEEEEESSHHHHH-HHHHHH-HTTCEEEEEECCTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECCCTT
T ss_pred ----CCEEEEECCCcchHH-HHHHHH-HcCCeeEEEeCCCCCCCCHHHHHHHHhcc--CCcEEEEEccCCCccccCCHHH
Confidence 677777777776632 222221 12778888773 5899999998742 5788999999999999999999
Q ss_pred HHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccc-cCCc-cEEeeC
Q 019931 274 LVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAA-GCQG-GFIACR 334 (334)
Q Consensus 274 L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~-G~~G-G~i~~~ 334 (334)
|.++|++||++||+|++|++|.. . .++. .++|+++.|+||++ |+.| |+++++
T Consensus 166 i~~~~~~~~~~li~D~a~~~~~~---~------~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~ 220 (393)
T 2huf_A 166 VGALCHQHNCLLIVDTVASLGGA---P------MFMDRWEIDAMYTGSQKVLGAPPGITPVSFS 220 (393)
T ss_dssp HHHHHHHTTCEEEEECTTTBTTB---C------CCTTTTTCSEEECCSSSTTCCCSSCEEEEEC
T ss_pred HHHHHHHcCCEEEEEcccccCCC---C------cchhhcCccEEEECCCcccccCCCeEEEEEC
Confidence 99999999999999999986532 1 1111 24689999999986 4555 777653
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-19 Score=182.32 Aligned_cols=160 Identities=14% Similarity=0.073 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHhHhCCCcEEEeccH-HHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 150 NYHRLLESCLADLKKKEDCLLCPTG-FAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~e~alv~~sG-~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
..+.++|+++|+++|+++++++++| ++||.+++.+++++ ||.|++++++|.|+.++++++ |
T Consensus 195 g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~p--------------GD~VLv~r~~H~S~~~~l~ls----G 256 (715)
T 3n75_A 195 GPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPA--------------GSTILIDRNCHKSLTHLMMMS----D 256 (715)
T ss_dssp THHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCT--------------TCEEEEESSCCHHHHHHHHHS----C
T ss_pred HHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCCC--------------CCEEEECCCccHHHHHHHHHc----C
Confidence 4578999999999999999999888 58999999998875 899999999999999999988 8
Q ss_pred cEEEEeeCC---------------CHHHHHHHHhcCCC--CcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCc
Q 019931 229 VEVFVYKHC---------------DMSHLKTLLSCCTM--RKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAH 291 (334)
Q Consensus 229 ~~v~~~~~~---------------D~~~Le~~l~~~~~--~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh 291 (334)
++++.++.. |+++|++++++.+. .+++|++.++ |++|.+.|+++|.++|++++ |++||||
T Consensus 257 a~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH 333 (715)
T 3n75_A 257 VTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAW 333 (715)
T ss_dssp CEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTT
T ss_pred CEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEcccc
Confidence 888877631 79999999986431 1235555555 89999999999999998774 7999999
Q ss_pred cccc-ccCCCcccccccCCCC--CccEE---EecCcccccC--CccEEee
Q 019931 292 GTFV-CGKNGGGVAEQFNCER--DVDIC---VGTLSKAAGC--QGGFIAC 333 (334)
Q Consensus 292 ~~Gv-~G~~G~g~~~~~~~~~--~~Div---~~SlsKa~G~--~GG~i~~ 333 (334)
+.++ +++.+.+. ..+.. ++|++ ++|+||++++ .||++.+
T Consensus 334 ~~~~~f~~~~~~~---~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v 380 (715)
T 3n75_A 334 VPYTNFSPIYEGK---CGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHV 380 (715)
T ss_dssp CTTGGGSGGGTTS---STTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEE
T ss_pred ccccccCCccccc---cccccCcCCCEEEEEEecccccccCCCCeeEEEe
Confidence 9875 44432222 11221 24654 9999999987 5788865
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=169.22 Aligned_cols=202 Identities=14% Similarity=0.092 Sum_probs=137.0
Q ss_pred eeEEEeecCc-cCCCCCCHHHHHHHHHhcC------C--CCccccccCchHHHHHHHHHHHhHhC----------CCcEE
Q 019931 109 KRLLLFSGND-YLGLSSHPTIAKAAARHGM------G--PRGSALICGYTNYHRLLESCLADLKK----------KEDCL 169 (334)
Q Consensus 109 ~~~l~f~sn~-yLgl~~~p~v~~a~~~~g~------g--~~~sr~~~G~~~~~~~LE~~La~~~g----------~e~al 169 (334)
+.+++|.+|. .+ .+|.+.+++.+.-. + ....-..++......+|+++++++++ .+.++
T Consensus 36 ~~~i~l~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~ 112 (428)
T 1iay_A 36 NGVIQMGLAENQL---CLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVV 112 (428)
T ss_dssp TSBEECSSCCCCS---SHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCE
T ss_pred Cceeeeccccchh---hHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEE
Confidence 3578998864 33 35677777764321 0 00000111111113567777777765 35677
Q ss_pred EeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHH-HhhhcCCcEEEEeeCC-------CHHH
Q 019931 170 LCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIR-IAERTKMVEVFVYKHC-------DMSH 241 (334)
Q Consensus 170 v~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~-ls~~~~g~~v~~~~~~-------D~~~ 241 (334)
+++++++++..++.+++.+ ||.|++..+.|.+....+. .. |.+++.++.+ |+++
T Consensus 113 ~~~G~~~ai~~~~~~~~~~--------------gd~Vl~~~p~y~~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~ 174 (428)
T 1iay_A 113 MAGGATGANETIIFCLADP--------------GDAFLVPSPYYPAFNRDLRWRT----GVQLIPIHCESSNNFKITSKA 174 (428)
T ss_dssp EEEHHHHHHHHHHHHHCCT--------------TCEEEEESSCCTTHHHHTTTTT----CCEEEEECCCTTTTTCCCHHH
T ss_pred EccChHHHHHHHHHHhCCC--------------CCeEEEccCCCcchHHHHHHhc----CCEEEEeecCCccCCcCCHHH
Confidence 7788889999999988764 7888888888877665443 33 7888888752 7899
Q ss_pred HHHHHhcC---CCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCC---
Q 019931 242 LKTLLSCC---TMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERD--- 312 (334)
Q Consensus 242 Le~~l~~~---~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~--- 312 (334)
|++++++. ..++++|++++++||+|.+.| +++|+++|++||++||+||+|+.+.++ +........+...
T Consensus 175 l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~--~~~~~~~~~~~~~~~~ 252 (428)
T 1iay_A 175 VKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFD--TPQFVSIAEILDEQEM 252 (428)
T ss_dssp HHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCS--SSCCCCHHHHHTSGGG
T ss_pred HHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccC--CCCccCHHHhcccccc
Confidence 99988642 236888888999999999999 999999999999999999999975553 2221111111111
Q ss_pred ----cc--EEEecCcccccCCc---cEEee
Q 019931 313 ----VD--ICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 313 ----~D--iv~~SlsKa~G~~G---G~i~~ 333 (334)
.| |++.||||+||+.| |++++
T Consensus 253 ~~~~~d~viv~~s~sK~~g~~Glr~G~~~~ 282 (428)
T 1iay_A 253 TYCNKDLVHIVYSLSKDMGLPGFRVGIIYS 282 (428)
T ss_dssp TTSCTTSEEEEEESTTTSSCGGGCEEEEEE
T ss_pred ccCCCCcEEEEecchhhcCCCCceEEEEEe
Confidence 34 88999999998766 88775
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=165.68 Aligned_cols=177 Identities=15% Similarity=0.134 Sum_probs=133.2
Q ss_pred CCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCc--EE-EeccHHHHHHHHHHHHhhhhhhccCCCccCC
Q 019931 124 SHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKED--CL-LCPTGFAANMAVIVAVGNIASLLAGDEKSFK 200 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~--al-v~~sG~~An~~ai~al~~~~~~~~~~~~~~~ 200 (334)
-+|++++++.+...+. ......+...++++++++++|.+. .+ +++||++|+..++.++.++
T Consensus 22 ~~~~v~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~------------ 85 (416)
T 3isl_A 22 VDPRVLRVMSTPVVGQ----FDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEP------------ 85 (416)
T ss_dssp CCHHHHHHTTSCCCCT----TSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCT------------
T ss_pred cCHHHHHHhcccCCCC----ccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCC------------
Confidence 3677777776633221 112225667999999999999754 34 5588899999999988654
Q ss_pred CCCeEEEEcCCCchh--hHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHH
Q 019931 201 DEKIAIFSDALNHAS--IIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVE 273 (334)
Q Consensus 201 ~~gd~Vl~d~~~H~s--~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~ 273 (334)
||.|++....|.+ +...++.. |.+++.++.+ |+++|++++++ +++++|++++++|++|.+.|+++
T Consensus 86 --gd~Vl~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~l~~ 157 (416)
T 3isl_A 86 --EDDVLIPIYGRFGYLLTEIAERY----GANVHMLECEWGTVFDPEDIIREIKK--VKPKIVAMVHGETSTGRIHPLKA 157 (416)
T ss_dssp --TCEEEEEESSHHHHHHHHHHHHT----TCEEEEEECCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECCCHH
T ss_pred --CCEEEEecCCcccHHHHHHHHhc----CCeeEEEecCCCCCCCHHHHHHHHhh--CCCcEEEEEccCCCCceecCHHH
Confidence 7778877777776 44444444 7888888765 89999999974 26789999999999999999999
Q ss_pred HHHHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccc-cCCc-cEEee
Q 019931 274 LVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAA-GCQG-GFIAC 333 (334)
Q Consensus 274 L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~-G~~G-G~i~~ 333 (334)
|.++|++||++||+|++|+.|.+. +++ ..++|+++.|++|++ |+.| |++++
T Consensus 158 i~~l~~~~~~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~ 211 (416)
T 3isl_A 158 IGEACRTEDALFIVDAVATIGGCE---------VKVDEWKIDAAIGGTQKCLSVPSGMAPITY 211 (416)
T ss_dssp HHHHHHHTTCEEEEECTTTTTTSC---------CCTTTTTCSEEECCSSSTTCCCSSEEEEEE
T ss_pred HHHHHHHcCCEEEEECCccccCCC---------cchhhcCCCEEEecCccccCCCCCeEEEEE
Confidence 999999999999999999876431 111 134789999999985 5555 66654
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=169.49 Aligned_cols=200 Identities=15% Similarity=0.079 Sum_probs=139.9
Q ss_pred eEEEeecCccCCCCCCHH----HHHHHHHhc----CCCCccccccCchHHHHHHHHHHHhHh-CC-------CcEEE--e
Q 019931 110 RLLLFSGNDYLGLSSHPT----IAKAAARHG----MGPRGSALICGYTNYHRLLESCLADLK-KK-------EDCLL--C 171 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~----v~~a~~~~g----~g~~~sr~~~G~~~~~~~LE~~La~~~-g~-------e~alv--~ 171 (334)
..+||+.++|++...+|. ++++++++. .+...+....|. .++++++++++ |. +++++ +
T Consensus 50 ~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~----~~lr~~ia~~l~g~~~~~~~~~~i~~~~t 125 (448)
T 3meb_A 50 KKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGF----PLFLEAAQFLMFGKDSKAAQEGRIASCQS 125 (448)
T ss_dssp TCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCC----HHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcch----HHHHHHHHHHhcCCCccccCcCcEEEEEC
Confidence 369999999999876644 444544443 333444444554 55667777765 64 46778 8
Q ss_pred ccHHHHHHHH--HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHH----HhhhcCCcEEEEeeC---C-----
Q 019931 172 PTGFAANMAV--IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIR----IAERTKMVEVFVYKH---C----- 237 (334)
Q Consensus 172 ~sG~~An~~a--i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~----ls~~~~g~~v~~~~~---~----- 237 (334)
++|++|+..+ +.+++.+ ||.|++..+.|.+....++ .. |.+++.++. +
T Consensus 126 ~ggt~al~l~~~~~~~~~~--------------gd~Vlv~~p~~~~~~~~~~~~~~~~----G~~v~~~~~~~~~~~~~~ 187 (448)
T 3meb_A 126 LSGTGSLHIGFEFLHLWMP--------------KAEFYMPSTTWPNHYGIYDKVFNKL----KVPYKEYTYLRKDGELEI 187 (448)
T ss_dssp SHHHHHHHHHHHHHHHHCT--------------TCCEEEESSCCTHHHHHHHHHHCTT----TSCCEEECCBCTTSCSSB
T ss_pred CcHHHHHHHHHHHHHHhCC--------------CCEEEECCCCCHhHHHHHHhhHHhC----CCeEEEEeccccccCCCc
Confidence 9999999774 4444443 7788888888888887777 55 777777765 2
Q ss_pred CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCC--cccccccCCCCC
Q 019931 238 DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNG--GGVAEQFNCERD 312 (334)
Q Consensus 238 D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G--~g~~~~~~~~~~ 312 (334)
|+++|++.+++.+.++++|++.+++||+|.+.+ +++|+++|++||+++|+||+|....++... ......+.-...
T Consensus 188 d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~ 267 (448)
T 3meb_A 188 DFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGV 267 (448)
T ss_dssp CHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTC
T ss_pred CHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCC
Confidence 789999998864446789999999999998877 556999999999999999999864443200 011111101122
Q ss_pred ccEEEecCcccccCCc---cEE
Q 019931 313 VDICVGTLSKAAGCQG---GFI 331 (334)
Q Consensus 313 ~Div~~SlsKa~G~~G---G~i 331 (334)
..|++.||||+||+.| ||+
T Consensus 268 ~~i~~~S~SK~~g~~G~RiG~l 289 (448)
T 3meb_A 268 EVLVAQSFSKNFGLYGERIGCL 289 (448)
T ss_dssp CEEEEEECTTTSCCGGGCCEEE
T ss_pred cEEEEecccccCCCccccceee
Confidence 3488999999999877 886
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.2e-19 Score=168.89 Aligned_cols=202 Identities=13% Similarity=0.090 Sum_probs=133.3
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHh----cCCCCccccccCchHHHHHHHHHHHhH--hC---CCcEEEeccHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARH----GMGPRGSALICGYTNYHRLLESCLADL--KK---KEDCLLCPTGFAAN 178 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~----g~g~~~sr~~~G~~~~~~~LE~~La~~--~g---~e~alv~~sG~~An 178 (334)
|+++|+|+++++ .+..+|.+++++.++ ..... ...++......+|+++++++ .| .+.+++++++++++
T Consensus 32 ~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~--~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al 108 (400)
T 3asa_A 32 QHTVINLSIGDT-TQPLNASVAEAFASSIARLSSPTT--CRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL 108 (400)
T ss_dssp TSCCEECSSCCC-CCCCCHHHHHHHHHHHHHHTSSSC--CCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred CCceEeccCCCC-CCCCCHHHHHHHHHHHhccccccc--ccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence 378999999975 667789999876543 21110 01111122347899999998 46 34577778888888
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcE-EEEeeCCCHHHHHHHHhcCCCCcEEEE
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVE-VFVYKHCDMSHLKTLLSCCTMRKKVVV 257 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~-v~~~~~~D~~~Le~~l~~~~~~~~lVv 257 (334)
..++. ++.+ ||.|++..+.|......++.. |.+ ++.++.++-..+...+++. +++++|+
T Consensus 109 ~~~~~-~~~~--------------gd~Vl~~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~l~~~-~~~~~v~ 168 (400)
T 3asa_A 109 FRLLS-FFGP--------------NQTVAIQDPSYPAYLDIARLT----GAKEIIALPCLQENAFFPEFPED-THIDILC 168 (400)
T ss_dssp HHHHH-HHCS--------------SCEEEEEESCCHHHHHHHHHT----TCSEEEEEECCGGGTTCCCCCTT-CCCSEEE
T ss_pred HHHHH-HcCC--------------CCEEEECCCCcHHHHHHHHHc----CCcceEecccchhcCcccChhhc-cCccEEE
Confidence 77553 4443 677888878888877776665 666 7777754211111001111 3678888
Q ss_pred EcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC--CCccEEEecCcccccCCc---c
Q 019931 258 TDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE--RDVDICVGTLSKAAGCQG---G 329 (334)
Q Consensus 258 ~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~--~~~Div~~SlsKa~G~~G---G 329 (334)
+++++||+|.+.| +++|+++|+++|++||+||+|+...++ +........+. ++.+|+++||||+||..| |
T Consensus 169 l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG 246 (400)
T 3asa_A 169 LCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISD--PSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLG 246 (400)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCC--TTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCE
T ss_pred EeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcC--CCCCCchhhCCCCCCceEEEecchhhcCCcchhee
Confidence 8899999999988 667899999999999999999953332 22111112222 334688999999998766 8
Q ss_pred EEeeC
Q 019931 330 FIACR 334 (334)
Q Consensus 330 ~i~~~ 334 (334)
|++++
T Consensus 247 ~~~~~ 251 (400)
T 3asa_A 247 WTVIP 251 (400)
T ss_dssp EEECC
T ss_pred EEeeC
Confidence 88764
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=166.31 Aligned_cols=155 Identities=19% Similarity=0.237 Sum_probs=126.3
Q ss_pred chHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHH-hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc
Q 019931 148 YTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAV-GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT 226 (334)
Q Consensus 148 ~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al-~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~ 226 (334)
..+...++|+++++++|.+++++++||++|+..++.++ .+ +||.|++....|.++...++..
T Consensus 33 ~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~--------------~gd~Vi~~~~~~~~~~~~~~~~--- 95 (367)
T 3nyt_A 33 LGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVG--------------PGDEVITPGFTYVATAETVALL--- 95 (367)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCC--------------TTCEEEEESSSCTHHHHHHHHT---
T ss_pred CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCC--------------CcCEEEECCCccHHHHHHHHHc---
Confidence 35778999999999999999999999999999999987 44 3788999999999988888776
Q ss_pred CCcEEEEeeCC------CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCC
Q 019931 227 KMVEVFVYKHC------DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNG 300 (334)
Q Consensus 227 ~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G 300 (334)
|++++.++.+ |+++|++++++ ++++|+ +.|++|.+.|+++|.++|++||++||+|++|+.|... .|
T Consensus 96 -G~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~-~~ 167 (367)
T 3nyt_A 96 -GAKPVYVDIDPRTYNLDPQLLEAAITP---RTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASY-KG 167 (367)
T ss_dssp -TCEEEEECBCTTTCSBCGGGTGGGCCT---TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEE-TT
T ss_pred -CCEEEEEecCCccCCcCHHHHHHhcCc---CCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeE-CC
Confidence 8888888753 88899888853 788888 5567899999999999999999999999999987542 22
Q ss_pred cccccccCCCCCccEEEecC--cccccC--CccEEee
Q 019931 301 GGVAEQFNCERDVDICVGTL--SKAAGC--QGGFIAC 333 (334)
Q Consensus 301 ~g~~~~~~~~~~~Div~~Sl--sKa~G~--~GG~i~~ 333 (334)
.. .+... |+++.|| +|.+|+ .||++++
T Consensus 168 ~~----~~~~~--di~~~Sf~~~K~l~~~g~gg~~~~ 198 (367)
T 3nyt_A 168 KR----SCNLS--TVACTSFFPSAPLGCYGDGGAIFT 198 (367)
T ss_dssp EE----TTSSS--SEEEEECCTTSSSCCSSCCEEEEE
T ss_pred ee----ccCCC--CEEEEECCCCCcCCCcCceeEEEe
Confidence 22 12112 7999997 899987 3688875
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=9.3e-19 Score=167.99 Aligned_cols=196 Identities=18% Similarity=0.244 Sum_probs=137.9
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhc-----CCCCccccccCchHHHHHHH----HHHHhHhCCCcEEE-eccHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHG-----MGPRGSALICGYTNYHRLLE----SCLADLKKKEDCLL-CPTGFAAN 178 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g-----~g~~~sr~~~G~~~~~~~LE----~~La~~~g~e~alv-~~sG~~An 178 (334)
+.+++|++++++ +|.+++++.++- .|.++++...|. +...++| +++++++|.+...+ +++|++|+
T Consensus 24 ~~~~~~~~~~~~----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~ 98 (405)
T 2vi8_A 24 AKIELIASENFV----SRAVMEAQGSVLTNKYAEGYPGRRYYGGC-EYVDIVEELARERAKQLFGAEHANVQPHSGAQAN 98 (405)
T ss_dssp HSEECCTTCCCC----CHHHHHHHTSGGGGCCCCEETTEESSSCC-HHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred cceeeccCcccC----CHHHHHHHHHHhhcccccCCCCccccccc-hHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHH
Confidence 568899998887 999999886542 122334444443 3345555 69999999887755 58999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHH-HH--HHhhhcCCcEEEEeeC------CCHHHHHHHHhcC
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIID-GI--RIAERTKMVEVFVYKH------CDMSHLKTLLSCC 249 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~-g~--~ls~~~~g~~v~~~~~------~D~~~Le~~l~~~ 249 (334)
..++.++.++ ||.|++..+.|.+... .. ..... +.+++.++. .|+++|++++++.
T Consensus 99 ~~a~~~~~~~--------------gd~Vl~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~d~~~l~~~i~~~ 162 (405)
T 2vi8_A 99 MAVYFTVLEH--------------GDTVLGMNLSHGGHLTHGSPVNFSGV--QYNFVAYGVDPETHVIDYDDVREKARLH 162 (405)
T ss_dssp HHHHHHHCCT--------------TCEEEEECGGGTCCTTTTCTTSHHHH--HSEEEEECBCTTTCSBCHHHHHHHHHHH
T ss_pred HHHHHHhcCC--------------CCEEEEecccccchhcccchhhhccc--eeEEEecccccccCCcCHHHHHHHHHhc
Confidence 9999988654 7888888888877643 11 12210 236666653 3899999998742
Q ss_pred CCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc-CCc
Q 019931 250 TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG-CQG 328 (334)
Q Consensus 250 ~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G-~~G 328 (334)
++++|++.+. + .|...|+++|.++|++||++||+||+|+.|.++. +... .++ ...|+++.||||+|+ +.|
T Consensus 163 --~~~~v~~~~~-~-~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~---~~~~-~~~-~~~di~~~s~sK~~~g~~g 233 (405)
T 2vi8_A 163 --RPKLIVAAAA-A-YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAA---GLHP-NPV-PYAHFVTTTTHKTLRGPRG 233 (405)
T ss_dssp --CCSEEEECCS-S-CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT---TSSC-CST-TTCSEEEEESSSTTCCCSC
T ss_pred --CCeEEEEeCC-C-CCccCCHHHHHHHHHHcCCEEEEEcccccccccc---CcCC-Ccc-ccCCEEEEeccccCCCCCC
Confidence 4567776432 2 3566789999999999999999999999775532 2111 222 246899999999997 788
Q ss_pred cEEeeC
Q 019931 329 GFIACR 334 (334)
Q Consensus 329 G~i~~~ 334 (334)
|+++++
T Consensus 234 G~~~~~ 239 (405)
T 2vi8_A 234 GMILCQ 239 (405)
T ss_dssp EEEEEC
T ss_pred eEEEEc
Confidence 998864
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-18 Score=166.37 Aligned_cols=197 Identities=12% Similarity=0.037 Sum_probs=140.7
Q ss_pred cceeEEEeecCc-cCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHH
Q 019931 107 QFKRLLLFSGND-YLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAV 185 (334)
Q Consensus 107 ~g~~~l~f~sn~-yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al 185 (334)
.|+.|+||.++. ...+ ++.+++++.. +.. .++..+...+|+++|+++++.++++++++|++|+..+++++
T Consensus 40 ~~~~ylD~~~~~~~~~~--~~~~~~a~~~---~~~----~y~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l 110 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNAM--SDKQWAGMMM---GDE----AYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLA 110 (456)
T ss_dssp GGGCSEECSCSSSCCCC--CHHHHHHHTT---CCC----CSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHH
T ss_pred cccceeeeccccCCccC--CHHHHHHhhc---chh----hcccChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHh
Confidence 457789987764 2222 5777776652 211 12245777899999999999999999999999999999988
Q ss_pred hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC---------------CCHHHHHHHHhcCC
Q 019931 186 GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH---------------CDMSHLKTLLSCCT 250 (334)
Q Consensus 186 ~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~---------------~D~~~Le~~l~~~~ 250 (334)
+++ || |+.+..+|.++...+... |++++.++. .|+++|++++++.+
T Consensus 111 ~~~--------------gd-i~~~~~~~~~~~~~~~~~----G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t 171 (456)
T 2ez2_A 111 IKP--------------GQ-YVAGNMYFTTTRYHQEKN----GAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKG 171 (456)
T ss_dssp CCT--------------TC-EEEESSCCHHHHHHHHHT----TCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC
T ss_pred CCC--------------CC-EeccccccchhHHHHHHc----CCEEEEecccccccccccccccCCCCHHHHHHHHHhcc
Confidence 654 67 665555558877777766 788777642 28899999997522
Q ss_pred -CCcEEEEEcCCCC-CCCCccC---HHHHHHHHHHcCCEEEEecCcccc---c-----ccCCCccccc---ccCCCCCcc
Q 019931 251 -MRKKVVVTDSLFS-MDGDFAP---MVELVKLRRKYGFLLVLDDAHGTF---V-----CGKNGGGVAE---QFNCERDVD 314 (334)
Q Consensus 251 -~~~~lVv~e~v~n-~~G~~~p---L~~L~ela~k~ga~LivDeAh~~G---v-----~G~~G~g~~~---~~~~~~~~D 314 (334)
.+.++|++++++| ++|.+.| +++|+++|++||++||+||+|+.| + +...|..+.. ..+. ..|
T Consensus 172 ~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~--~~d 249 (456)
T 2ez2_A 172 AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFS--YAD 249 (456)
T ss_dssp GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHT--TCS
T ss_pred ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcc--cCC
Confidence 1248899998888 9998887 999999999999999999999975 1 1223332210 1121 236
Q ss_pred EEEecCcccccC-CccEEee
Q 019931 315 ICVGTLSKAAGC-QGGFIAC 333 (334)
Q Consensus 315 iv~~SlsKa~G~-~GG~i~~ 333 (334)
+++.|++|.++. .||++++
T Consensus 250 ~~~~S~kk~~~~~~gG~~~~ 269 (456)
T 2ez2_A 250 GCTMSGKKDCLVNIGGFLCM 269 (456)
T ss_dssp EEEEETTTTTCCSSCEEEEE
T ss_pred EEEEeCcccCCCCceeEEEE
Confidence 777788887653 4788876
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-18 Score=165.34 Aligned_cols=177 Identities=15% Similarity=0.120 Sum_probs=136.3
Q ss_pred CHHHHHHHHHhc-CCC-CccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHH-hhhhhhccCCCccCCC
Q 019931 125 HPTIAKAAARHG-MGP-RGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAV-GNIASLLAGDEKSFKD 201 (334)
Q Consensus 125 ~p~v~~a~~~~g-~g~-~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al-~~~~~~~~~~~~~~~~ 201 (334)
+|++++++.+.- .+. ..+....|...+.+++++++++++|.++++++++|++|+..++.++ .++
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~~------------- 81 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGE------------- 81 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCT-------------
T ss_pred CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCC-------------
Confidence 688888765431 111 1133345666778999999999999988999999999999999987 543
Q ss_pred CCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHH
Q 019931 202 EKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELV 275 (334)
Q Consensus 202 ~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ 275 (334)
||.|++..+.|.++...++.. |++++.++.+ |+++|++++++ ++++|+++ |++|.+.|+++|.
T Consensus 82 -gd~Vl~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~v~~~---~~~G~~~~~~~i~ 150 (418)
T 2c81_A 82 -GDEVIVPSLTWIATATAVLNV----NALPVFVDVEADTYCIDPQLIKSAITD---KTKAIIPV---HLFGSMANMDEIN 150 (418)
T ss_dssp -TCEEEEESSSCTHHHHHHHHT----TCEEEEECBCTTTCSBCHHHHGGGCCT---TEEEECCB---CCTTCCCCHHHHH
T ss_pred -cCEEEECCCccHhHHHHHHHc----CCEEEEEecCCCCCCcCHHHHHHhhCC---CCeEEEEe---CCcCCcccHHHHH
Confidence 788998999999988888766 8888888754 77888877753 68888865 4789999999999
Q ss_pred HHHHHcCCEEEEecCccccc-ccCCCcccccccCCCCCccEEEecC--cccccC-CccEEee
Q 019931 276 KLRRKYGFLLVLDDAHGTFV-CGKNGGGVAEQFNCERDVDICVGTL--SKAAGC-QGGFIAC 333 (334)
Q Consensus 276 ela~k~ga~LivDeAh~~Gv-~G~~G~g~~~~~~~~~~~Div~~Sl--sKa~G~-~GG~i~~ 333 (334)
++|++||++||+|++|+.+. +. +.. .+... |+.+.|| +|.+|+ .||++++
T Consensus 151 ~~~~~~~~~li~D~a~~~~~~~~--~~~----~~~~~--~~~~~s~s~~K~~~~g~~g~~~~ 204 (418)
T 2c81_A 151 EIAQEHNLFVIEDCAQSHGSVWN--NQR----AGTIG--DIGAFSCQQGKVLTAGEGGIIVT 204 (418)
T ss_dssp HHHHHTTCEEEEECTTCTTCEET--TEE----TTSSS--SEEEEECCTTSSSCSSSCEEEEE
T ss_pred HHHHHCCCEEEEECcccccCccC--CEe----ccccc--ceEEEeccCCcccCCCCeEEEEE
Confidence 99999999999999999875 32 221 11112 5777888 999976 6688876
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=160.83 Aligned_cols=175 Identities=17% Similarity=0.040 Sum_probs=130.2
Q ss_pred CCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCC
Q 019931 124 SHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKD 201 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~ 201 (334)
.+|.+++++.++-... ..........++++++++++|.+ .++++++|++|+..++.++.++
T Consensus 12 ~~~~v~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~------------- 74 (352)
T 1iug_A 12 LHPKALEALARPQLHH----RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAP------------- 74 (352)
T ss_dssp CCHHHHHHHHSCCCCT----TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCT-------------
T ss_pred CCHHHHHHhccCCCCc----cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCC-------------
Confidence 5799999988764321 12223456789999999999975 5677789999999999988654
Q ss_pred CCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHH
Q 019931 202 EKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVK 276 (334)
Q Consensus 202 ~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~e 276 (334)
||.|++....|.+.. ...+.. ..|.+++.++.+ |+++|++ +++++|++++++|++|.+.|+++|.+
T Consensus 75 -gd~vl~~~~~~~~~~-~~~~~~-~~g~~~~~v~~~~~~~~d~~~l~~------~~~~~v~~~~~~nptG~~~~l~~i~~ 145 (352)
T 1iug_A 75 -GERVLVPVYGKFSER-FYEIAL-EAGLVVERLDYPYGDTPRPEDVAK------EGYAGLLLVHSETSTGALADLPALAR 145 (352)
T ss_dssp -TCEEEEEECSHHHHH-HHHHHH-HTTCEEEEEECCTTCCCCTTTSCC------SSCSEEEEESEETTTTEECCHHHHHH
T ss_pred -CCeEEEEeCCchhHH-HHHHHH-HcCCceEEEeCCCCCCCCHHHHhc------cCCcEEEEEEecCCcceecCHHHHHH
Confidence 788888888888765 333321 127788877752 5666655 26789999999999999999999999
Q ss_pred HHHHc--CCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccc-cCCc-cEEee
Q 019931 277 LRRKY--GFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAA-GCQG-GFIAC 333 (334)
Q Consensus 277 la~k~--ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~-G~~G-G~i~~ 333 (334)
+|++| |+++|+|++|++|... +++. .++|++++|+||++ |+.| |++++
T Consensus 146 l~~~~~~~~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~ 198 (352)
T 1iug_A 146 AFKEKNPEGLVGADMVTSLLVGE---------VALEAMGVDAAASGSQKGLMCPPGLGFVAL 198 (352)
T ss_dssp HHHHHCTTCEEEEECTTTBTTBC---------CCSGGGTCSEEEEESSSTTCCCSCEEEEEE
T ss_pred HHHhhCCCCEEEEECCccccCcc---------eeccccCeeEEEecCcccccCCCceeEEEE
Confidence 99999 9999999999865321 1111 14689999999965 5456 77665
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-18 Score=163.37 Aligned_cols=170 Identities=14% Similarity=0.064 Sum_probs=133.3
Q ss_pred HHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHH-hhhhhhccCCCccCCCCCeEE
Q 019931 128 IAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAV-GNIASLLAGDEKSFKDEKIAI 206 (334)
Q Consensus 128 v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al-~~~~~~~~~~~~~~~~~gd~V 206 (334)
+++++.+.-... .++..+...+|+++++++++.++++++++|++|+..++.++ .++ +|.|
T Consensus 21 ~~~~~~~~~~~~-----~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~~--------------gd~v 81 (374)
T 3uwc_A 21 YLNDLREFIKTA-----DFTLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIGA--------------GDEV 81 (374)
T ss_dssp HHHHHHHHHHHT-----CCSSCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCT--------------TCEE
T ss_pred HHHHHHHHHHcC-----CcccChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCC--------------CCEE
Confidence 677665432111 12345778999999999999999999999999999999887 543 7889
Q ss_pred EEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHc
Q 019931 207 FSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKY 281 (334)
Q Consensus 207 l~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ 281 (334)
++..+.|.+....++.. |.+++.++.+ |+++|++++++ ++++|+ ++|++|.+.|+++|.++|++|
T Consensus 82 ~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~v~---~~n~~G~~~~~~~i~~~~~~~ 151 (374)
T 3uwc_A 82 ITCANTFIASVGAIVQA----GATPVLVDSENGYVIDPEKIEAAITD---KTKAIM---PVHYTGNIADMPALAKIAKKH 151 (374)
T ss_dssp EEESSSCHHHHHHHHHT----TCEEEEECBCTTSSBCGGGTGGGCCT---TEEEEC---CBCGGGCCCCHHHHHHHHHHT
T ss_pred EECCCccHHHHHHHHHc----CCEEEEEecCCCCCcCHHHHHHhCCC---CceEEE---EeCCcCCcCCHHHHHHHHHHc
Confidence 99999999988887766 8899988875 88888888764 677777 778999999999999999999
Q ss_pred CCEEEEecCcccccccCCCcccccccCCCCCccEEEecCc--ccccC--CccEEee
Q 019931 282 GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLS--KAAGC--QGGFIAC 333 (334)
Q Consensus 282 ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sls--Ka~G~--~GG~i~~ 333 (334)
|++||+|++|+.|..- .+. ..+. ..|+++.||| |.+|+ .||++++
T Consensus 152 ~~~li~D~~~~~g~~~-~~~----~~~~--~~d~~~~s~~~~K~l~~~g~~g~~~~ 200 (374)
T 3uwc_A 152 NLHIVEDACQTILGRI-NDK----FVGS--WGQFACFSLHPLKNLNVWSDAGVIIT 200 (374)
T ss_dssp TCEEEEECTTCTTCEE-TTE----ETTS--SSSEEEEECSSSSSSCCSSCCEEEEE
T ss_pred CCEEEEeCCCccCcee-CCe----eccc--cccEEEEeCCCCCcCCccceeEEEEe
Confidence 9999999999976431 111 1221 2489999977 99976 4688775
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.1e-19 Score=178.34 Aligned_cols=202 Identities=13% Similarity=0.104 Sum_probs=139.3
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC-------CcEEEeccHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK-------EDCLLCPTGFAANMAV 181 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~-------e~alv~~sG~~An~~a 181 (334)
+.++||+.+++ ++. +|.+++++.+.-.+...+....|...+.+++++.+.+..+. ++++++++|++|+..+
T Consensus 103 ~~~i~l~~g~~-~~~-~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~ 180 (533)
T 3f6t_A 103 IDAVNYCHTEL-GLN-RDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYA 180 (533)
T ss_dssp HHHHHHHHHTT-CCC-HHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHH
T ss_pred HhheeccCCCC-CcC-CcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHH
Confidence 35678888764 444 67777644332111111112345556666666666555232 4677888889999999
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC---------CHHHHHHHHhcCCCC
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC---------DMSHLKTLLSCCTMR 252 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~---------D~~~Le~~l~~~~~~ 252 (334)
+.++.... ..++||.|+++.+.|.++...++.. +++++.++.+ |+++|++++++ +
T Consensus 181 ~~~l~~~~---------l~~~gd~Viv~~p~~~~~~~~~~~~----g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~---~ 244 (533)
T 3f6t_A 181 FHSLAENH---------LLKKGDKIAINEPIFTPYLRIPELK----DYELVEVDLHSYEKNDWEIEPNEIEKLKDP---S 244 (533)
T ss_dssp HHHHHHTT---------SSCTTCEEEEESSCCHHHHTSGGGG----GSEEEEECCCEETTTTSEECHHHHHHHSCT---T
T ss_pred HHHhhhhh---------ccCCcCEEEEcCCCcHHHHHHHHHc----CCeEEEEEecCCcccCCCCCHHHHHHHhCC---C
Confidence 98742110 0024789999999999988777766 6777777642 78999988753 7
Q ss_pred cEEEEEcCCCCCCCCccCHH---HHHHHHH-HcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc
Q 019931 253 KKVVVTDSLFSMDGDFAPMV---ELVKLRR-KYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~pL~---~L~ela~-k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G 328 (334)
+++|++++++||+|.+.|.+ +|+++|+ +||+++|+||+|+...++ +..+. ...++.+|+++||||+||+.|
T Consensus 245 ~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~--~~~~~---~~~~~~~i~~~S~SK~~g~~G 319 (533)
T 3f6t_A 245 IKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN--FKSIY---SVVPYNTMLVYSYSKLFGCTG 319 (533)
T ss_dssp EEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTT--CCCHH---HHSGGGEEEEEESHHHHTCGG
T ss_pred CeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccC--ccCHh---hcCCCCEEEEecCcccCCCcc
Confidence 89998889999999998865 7888888 689999999999854332 22221 122345799999999999877
Q ss_pred ---cEEee
Q 019931 329 ---GFIAC 333 (334)
Q Consensus 329 ---G~i~~ 333 (334)
||+++
T Consensus 320 ~RiG~l~~ 327 (533)
T 3f6t_A 320 WRLGVIAL 327 (533)
T ss_dssp GCEEEEEE
T ss_pred cceEEEEE
Confidence 99876
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-18 Score=164.73 Aligned_cols=184 Identities=16% Similarity=0.164 Sum_probs=133.8
Q ss_pred eEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC---CcEEEeccHHHHHHHHHHHHh
Q 019931 110 RLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK---EDCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~---e~alv~~sG~~An~~ai~al~ 186 (334)
+++|++.... ....+|++++++..| .+....++++++.+++++|. ++++++++|++|+..++.++
T Consensus 29 ~v~~~~~~~~-~~~~~~~v~~a~~~~----------~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~- 96 (374)
T 2aeu_A 29 ALYDLSGLSG-GFLIDEKDKALLNTY----------IGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL- 96 (374)
T ss_dssp GCEECSSCCC-CCCCCHHHHHHHTST----------THHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-
T ss_pred ceeeecccCC-CCCCCHHHHHHHHHh----------cCchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC-
Confidence 6677665431 234678888887622 12234557888888889998 77899999999999999976
Q ss_pred hhhhhccCCCccCCCCCeEEEEcCCC---chhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEE-EEEcCCC
Q 019931 187 NIASLLAGDEKSFKDEKIAIFSDALN---HASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKV-VVTDSLF 262 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~gd~Vl~d~~~---H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~l-Vv~e~v~ 262 (334)
+ ||.|++..+. |.+....++.. |++++.+ .|+++|+++ + +++++ |++++++
T Consensus 97 -~--------------gd~Vl~~~~~y~~~~~~~~~~~~~----g~~~~~v--~d~~~l~~~-~---~~~~~~v~~~~p~ 151 (374)
T 2aeu_A 97 -K--------------PKKVIHYLPELPGHPSIERSCKIV----NAKYFES--DKVGEILNK-I---DKDTLVIITGSTM 151 (374)
T ss_dssp -C--------------CSEEEEECSSSSCCTHHHHHHHHT----TCEEEEE--SCHHHHHTT-C---CTTEEEEEECBCT
T ss_pred -C--------------CCEEEEecCCCCccHHHHHHHHHc----CcEEEEe--CCHHHHHhc-C---CCccEEEEEccCC
Confidence 5 6667766663 33444444444 7888877 799998887 3 37899 9999999
Q ss_pred CCCC-CccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc-CCccEEeeC
Q 019931 263 SMDG-DFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG-CQGGFIACR 334 (334)
Q Consensus 263 n~~G-~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G-~~GG~i~~~ 334 (334)
|++| ...|+++|.++|++||++||+||+|+.+..++...... .. .++|++++|+||+++ ..+||++++
T Consensus 152 nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~~--~~~di~~~S~sK~l~g~~~G~~~~~ 221 (374)
T 2aeu_A 152 DLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPA--LK--LGADLVVTSTDKLMEGPRGGLLAGK 221 (374)
T ss_dssp TSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCH--HH--HTCSEEEEETTSSSSSCSCEEEEEE
T ss_pred CCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCc--cc--cCCcEEEecCcccccCcceEEEEEC
Confidence 9999 89999999999999999999999998763211111000 11 135899999999995 467888763
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=167.32 Aligned_cols=186 Identities=14% Similarity=0.084 Sum_probs=141.6
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHH-hh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAV-GN 187 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al-~~ 187 (334)
++|+||+++.. .+ +|.+++++.+..... .++..+...++++++++++|.+.++++++|++|+..++.++ ++
T Consensus 30 ~~~id~~~~~~-~~--~~~v~~a~~~~~~~~-----~y~~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~~ 101 (399)
T 2oga_A 30 VPFLDLKAAYE-EL--RAETDAAIARVLDSG-----RYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIG 101 (399)
T ss_dssp BCSCCHHHHHH-HT--HHHHHHHHHHHHHHT-----CCSSSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTCC
T ss_pred CcccccCcCCC-CC--CHHHHHHHHHHHhcC-----CCCCchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCCC
Confidence 57889887642 12 288988876543210 12234677999999999999988999999999999999887 54
Q ss_pred hhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC------CCHHHHHHHHhcCCCCcEEEEEcCC
Q 019931 188 IASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH------CDMSHLKTLLSCCTMRKKVVVTDSL 261 (334)
Q Consensus 188 ~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~------~D~~~Le~~l~~~~~~~~lVv~e~v 261 (334)
+ +|.|++..+.|.++...++.. |.+++.++. .|+++|++++++ ++++|++
T Consensus 102 ~--------------gd~vl~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~v~~--- 157 (399)
T 2oga_A 102 P--------------GDEVIVPSHTYIASWLAVSAT----GATPVPVEPHEDHPTLDPLLVEKAITP---RTRALLP--- 157 (399)
T ss_dssp T--------------TCEEEEESSSCTHHHHHHHHT----TCEEEEECBCSSSSSBCHHHHHHHCCT---TEEEECC---
T ss_pred C--------------cCEEEECCCccHHHHHHHHHC----CCEEEEEecCCCCCCcCHHHHHHhcCC---CCeEEEE---
Confidence 3 778888888888888777766 788887763 378999988864 6788774
Q ss_pred CCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecC--cccccC--CccEEee
Q 019931 262 FSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTL--SKAAGC--QGGFIAC 333 (334)
Q Consensus 262 ~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sl--sKa~G~--~GG~i~~ 333 (334)
.|++|.+.|+++|.++|+++|++||+|++|+.|... ++.. ++. -.|+++.|| +|.+|+ .||++++
T Consensus 158 ~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~----~~~--~~di~~~S~~~sK~~~~~G~~g~~~~ 226 (399)
T 2oga_A 158 VHLYGHPADMDALRELADRHGLHIVEDAAQAHGARY-RGRR----IGA--GSSVAAFSFYPGKNLGCFGDGGAVVT 226 (399)
T ss_dssp BCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEE-TTEE----TTC--TTCEEEEECCTTSSSCCSSCCEEEEE
T ss_pred eCCcCCccCHHHHHHHHHHcCCEEEEECcccccCcc-CCee----ccc--ccCEEEEeCCCCccCCcCCceEEEEe
Confidence 467899999999999999999999999999977432 2322 121 137999999 799987 5688775
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=171.57 Aligned_cols=208 Identities=12% Similarity=0.052 Sum_probs=136.3
Q ss_pred cceeEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHH
Q 019931 107 QFKRLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAV 185 (334)
Q Consensus 107 ~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al 185 (334)
.|+.||||.++.+. |.|++++.+.- .|. ..++..+...+|+++++++++.+++++++||++||..+++++
T Consensus 39 ~~~~ylD~~~~~~~-----~~v~~a~~~~l~~~~----~~y~~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~ 109 (467)
T 2oqx_A 39 SEDVFIDLLTDSGT-----GAVTQSMQAAMMRGD----EAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVL 109 (467)
T ss_dssp GGGCSEECSCCSSC-----SCCCHHHHHHTTSCC----CCSSSCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHH
T ss_pred CCCeeEecccCCCc-----HHHHHHHHHHhccCc----ceeccCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHH
Confidence 35789999776543 78888776552 322 134455677899999999999999999999999999999988
Q ss_pred hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHH-HHhhhcCCcEEEEe--------------eC-CCHHHHHHHHhcC
Q 019931 186 GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGI-RIAERTKMVEVFVY--------------KH-CDMSHLKTLLSCC 249 (334)
Q Consensus 186 ~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~-~ls~~~~g~~v~~~--------------~~-~D~~~Le~~l~~~ 249 (334)
..+... ..+ ..++|.|+.. .+|....... ... ++.++.. .. .|+++||+++++.
T Consensus 110 ~~~~~~-~~G----~~~~d~Ii~~-~~h~~t~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~ 179 (467)
T 2oqx_A 110 IKKREQ-EKG----LDRSKMVAFS-NYFFDTTQGHSQIN----GCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEV 179 (467)
T ss_dssp HHHHHH-HHC----CCTTTCEEEE-SSCCHHHHHHHHHT----TCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHH
T ss_pred hccccc-cCC----CCccceEEec-ccccccchhhhhcc----CcceeeccccccccCCCCCCccCCcCHHHHHHHHHhc
Confidence 754000 000 0010446655 4675433222 222 3443321 11 2899999999742
Q ss_pred C-CCcEEEEEcCCCCCC-CCccC---HHHHHHHHHHcCCEEEEecCccc-ccc-------cCCCcccccccC--CCCCcc
Q 019931 250 T-MRKKVVVTDSLFSMD-GDFAP---MVELVKLRRKYGFLLVLDDAHGT-FVC-------GKNGGGVAEQFN--CERDVD 314 (334)
Q Consensus 250 ~-~~~~lVv~e~v~n~~-G~~~p---L~~L~ela~k~ga~LivDeAh~~-Gv~-------G~~G~g~~~~~~--~~~~~D 314 (334)
. +++++|++++++|++ |.+.+ +++|+++|++||++||+|++|.. +.+ +..|..... ++ ....+|
T Consensus 180 ~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~-~~~~~~~~~d 258 (467)
T 2oqx_A 180 GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQ-ITRETYKYAD 258 (467)
T ss_dssp CGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHH-HHHHHGGGCS
T ss_pred CCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHH-HhhhhhccCC
Confidence 1 268899999999996 77655 78999999999999999999987 543 222322111 11 001256
Q ss_pred EEEecCcccccCC-ccEEeeC
Q 019931 315 ICVGTLSKAAGCQ-GGFIACR 334 (334)
Q Consensus 315 iv~~SlsKa~G~~-GG~i~~~ 334 (334)
+++.|+||++|+. ||+++++
T Consensus 259 ~~~~s~sK~~g~~~Gg~~~~~ 279 (467)
T 2oqx_A 259 MLAMSAKKDAMVPMGGLLCMK 279 (467)
T ss_dssp EEEEESSSTTCCSSCEEEEEC
T ss_pred eEEEecccccCCCCceEEEec
Confidence 7889999999875 8888763
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.6e-18 Score=159.77 Aligned_cols=173 Identities=14% Similarity=0.087 Sum_probs=133.3
Q ss_pred CCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHH---hhhhhhccCCCccCC
Q 019931 124 SHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAV---GNIASLLAGDEKSFK 200 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al---~~~~~~~~~~~~~~~ 200 (334)
-+|++++++.++-..... +..+...+++++|++++|.+++++++||++|+..++.++ .+
T Consensus 11 ~~~~v~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~------------- 72 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSKQL-----TQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSA------------- 72 (375)
T ss_dssp CCHHHHHHHHHHHTSSCC-----SSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCT-------------
T ss_pred CCHHHHHHHHHHHHcCcc-----cCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCC-------------
Confidence 589999988765432111 124667899999999999998999999999999999987 44
Q ss_pred CCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHH
Q 019931 201 DEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELV 275 (334)
Q Consensus 201 ~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ 275 (334)
+||.|++..+.|.++...+... |++++.++.+ |+++|++++++ ++++|++.++ +|.+.|+++|.
T Consensus 73 -~gd~Vl~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~---tG~~~~l~~i~ 141 (375)
T 2fnu_A 73 -DRNEIITTPISFVATANMLLES----GYTPVFAGIKNDGNIDELALEKLINE---RTKAIVSVDY---AGKSVEVESVQ 141 (375)
T ss_dssp -TSCEEEECSSSCTHHHHHHHHT----TCEEEECCBCTTSSBCGGGSGGGCCT---TEEEEEEECG---GGCCCCHHHHH
T ss_pred -CCCEEEECCCccHhHHHHHHHC----CCEEEEeccCCCCCCCHHHHHhhcCc---CceEEEEeCC---cCCccCHHHHH
Confidence 3788999999999988887766 8888888753 78888887753 6787776655 79999999999
Q ss_pred HHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCc--ccccC-CccEEe
Q 019931 276 KLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLS--KAAGC-QGGFIA 332 (334)
Q Consensus 276 ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sls--Ka~G~-~GG~i~ 332 (334)
++|++||++||+|++|+.|... .+. ..+..+ |+++.||| |.+|+ .|++++
T Consensus 142 ~l~~~~~~~li~D~a~~~~~~~-~~~----~~~~~~--~i~~~s~s~~K~~~~g~g~~~~ 194 (375)
T 2fnu_A 142 KLCKKHSLSFLSDSSHALGSEY-QNK----KVGGFA--LASVFSFHAIKPITTAEGGAVV 194 (375)
T ss_dssp HHHHHHTCEEEEECTTCTTCEE-TTE----ETTSSS--SEEEEECCTTSSSCCSSCEEEE
T ss_pred HHHHHcCCEEEEECccccCCeE-CCe----eccccC--CeEEEeCCCCCCccccCceEEE
Confidence 9999999999999999987542 111 122112 67888888 99986 445554
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.8e-18 Score=163.05 Aligned_cols=183 Identities=16% Similarity=0.092 Sum_probs=138.0
Q ss_pred EeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCc-hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhh
Q 019931 113 LFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGY-TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIAS 190 (334)
Q Consensus 113 ~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~-~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~ 190 (334)
+|..++ ..+..+|.+++++.+.- .+ .++. .+...+|+++++++++.++++++++|++|+..++.++. +
T Consensus 20 ~l~~~~-p~~~~p~~~~~a~~~~~~~~------~y~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~-~-- 89 (424)
T 2po3_A 20 PLLVGR-PNRIDRARLYERLDRALDSQ------WLSNGGPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG-L-- 89 (424)
T ss_dssp CEETTC-CCCCCHHHHHHHHHHHHHHT------CCSSSCHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT-C--
T ss_pred cccccC-CCCCChHHHHHHHHHHHhcC------CcccCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC-C--
Confidence 455554 34555778888775532 12 1233 46779999999999999999999999999999999874 3
Q ss_pred hccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEEEEEcCCCCC
Q 019931 191 LLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKVVVTDSLFSM 264 (334)
Q Consensus 191 ~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~e~v~n~ 264 (334)
+|.|++..+.|.++...+... |.+++.++.+ |+++|++++++ ++++|++.+ +
T Consensus 90 ------------gd~Vlv~~~~~~~~~~~~~~~----G~~~~~v~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~---~ 147 (424)
T 2po3_A 90 ------------TGEVIMPSMTFAATPHALRWI----GLTPVFADIDPDTGNLDPDQVAAAVTP---RTSAVVGVH---L 147 (424)
T ss_dssp ------------CSEEEEESSSCTHHHHHHHHT----TCEEEEECBCTTTSSBCHHHHGGGCCT---TEEEEEEEC---G
T ss_pred ------------CCEEEECCCccHHHHHHHHHc----CCEEEEEecCCCcCCcCHHHHHHhhCc---CCcEEEEEC---C
Confidence 678888888898888877766 8888888754 77888777753 678887643 6
Q ss_pred CCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCc--ccccC-CccEEeeC
Q 019931 265 DGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLS--KAAGC-QGGFIACR 334 (334)
Q Consensus 265 ~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sls--Ka~G~-~GG~i~~~ 334 (334)
+|.+.++++|.++|+++|++||+|++|+.|.. ..+..+ +. ..||++.||| |++++ .||+++++
T Consensus 148 tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~-~~~~~~----~~--~~di~~~S~sk~K~l~~~~~G~~v~~ 213 (424)
T 2po3_A 148 WGRPCAADQLRKVADEHGLRLYFDAAHALGCA-VDGRPA----GS--LGDAEVFSFHATKAVNAFEGGAVVTD 213 (424)
T ss_dssp GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCE-ETTEET----TS--SSSEEEEECCTTSSSCCSSCEEEEES
T ss_pred CCCcCCHHHHHHHHHHcCCEEEEECccccCCe-ECCeec----cc--ccCEEEEeCCCCCCccCCCCeEEEeC
Confidence 89999999999999999999999999997643 223221 11 1369999998 88864 56888764
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-18 Score=161.66 Aligned_cols=182 Identities=14% Similarity=0.155 Sum_probs=139.9
Q ss_pred eEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHH-hhh
Q 019931 110 RLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAV-GNI 188 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al-~~~ 188 (334)
++|+|+..+ + +|++++++.+.-... . .+..+...+++++++++++.+++++++||++|+..++.++ .++
T Consensus 9 ~~i~~~~p~---~--~~~~~~a~~~~~~~~---~--~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~~~ 78 (393)
T 1mdo_A 9 DFLPFSRPA---M--GAEELAAVKTVLDSG---W--ITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGE 78 (393)
T ss_dssp CCBCSCCCC---C--CHHHHHHHHHHHHHT---C--CSSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCT
T ss_pred cccccCCCC---C--CHHHHHHHHHHHhcC---C--cCCChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCCCC
Confidence 466777632 3 478888775532110 1 1234777999999999999999999999999999999987 543
Q ss_pred hhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC------CCHHHHHHHHhcCCCCcEEEEEcCCC
Q 019931 189 ASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH------CDMSHLKTLLSCCTMRKKVVVTDSLF 262 (334)
Q Consensus 189 ~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~------~D~~~Le~~l~~~~~~~~lVv~e~v~ 262 (334)
||.|++..+.|.++...++.. |.+++.++. .|+++|++++++ ++++|++++
T Consensus 79 --------------gd~Vl~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~-- 135 (393)
T 1mdo_A 79 --------------GDEVITPSMTWVSTLNMIVLL----GANPVMVDVDRDTLMVTPEHIEAAITP---QTKAIIPVH-- 135 (393)
T ss_dssp --------------TCEEEEESSSCHHHHHHHHHT----TCEEEEECBCTTTCCBCHHHHHHHCCT---TEEEECCBC--
T ss_pred --------------CCEEEeCCCccHhHHHHHHHC----CCEEEEEeccCCcCCCCHHHHHHhcCC---CceEEEEeC--
Confidence 788888889999888877766 888888763 378999988864 678888653
Q ss_pred CCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCc--cccc-CCccEEee
Q 019931 263 SMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLS--KAAG-CQGGFIAC 333 (334)
Q Consensus 263 n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sls--Ka~G-~~GG~i~~ 333 (334)
++|.+.|+++|.++|+++|+++|+|++|+.|... .+.. ++. .|+++.||+ |.++ ..||++++
T Consensus 136 -~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~~~----~~~---~d~~~~S~~k~K~l~~~~~g~~~~ 200 (393)
T 1mdo_A 136 -YAGAPADLDAIYALGERYGIPVIEDAAHATGTSY-KGRH----IGA---RGTAIFSFHAIKNITCAEGGIVVT 200 (393)
T ss_dssp -GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEE-TTEE----TTS---SSEEEEECCTTSSSCSSSCEEEEE
T ss_pred -CCCCcCCHHHHHHHHHHcCCeEEEECccccCCeE-CCee----cCC---CCeEEEeCCCCCccccccceEEEe
Confidence 6899999999999999999999999999976432 2221 222 689999999 8885 46788876
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-18 Score=161.20 Aligned_cols=177 Identities=11% Similarity=0.082 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC---cEEEeccHHHHHHHHHHHHhhhhhhccCCCccCC
Q 019931 124 SHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE---DCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFK 200 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e---~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~ 200 (334)
.+|.+++++.+.-.+. ......+...+++++++++++.+ .++++++|++|+..+++++.++
T Consensus 34 ~~~~v~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~------------ 97 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIGH----MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEP------------ 97 (393)
T ss_dssp CCHHHHHHTTCCCCCT----TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCT------------
T ss_pred CCHHHHHHhcccccCc----ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCC------------
Confidence 4788988886632221 11222466789999999999864 3567799999999999988664
Q ss_pred CCCeEEEEcCCCchh--hHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHH
Q 019931 201 DEKIAIFSDALNHAS--IIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVE 273 (334)
Q Consensus 201 ~~gd~Vl~d~~~H~s--~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~ 273 (334)
||.|++....|.+ ....+... |.+++.++. .|+++|++++++. ++++|++++++|++|.+.|+++
T Consensus 98 --gd~vl~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~l~~ 169 (393)
T 3kgw_A 98 --GDSFLTGTNGIWGMRAAEIADRI----GARVHQMIKKPGEHYTLQEVEEGLAQH--KPVLLFLVHGESSTGVVQPLDG 169 (393)
T ss_dssp --TCEEEEEESSHHHHHHHHHHHHT----TCEEEEEECCTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECCCTT
T ss_pred --CCEEEEEeCCchhHHHHHHHHHc----CCceEEEeCCCCCCCCHHHHHHHHhhC--CCcEEEEeccCCcchhhccHHH
Confidence 6777766555542 23333333 788887763 4899999999752 5789999999999999999999
Q ss_pred HHHHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCccccc-CCc-cEEee
Q 019931 274 LVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAAG-CQG-GFIAC 333 (334)
Q Consensus 274 L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~G-~~G-G~i~~ 333 (334)
|.++|++||++||+|++|+.|... +++ ..++|+++.|+||+++ ..| |++++
T Consensus 170 i~~l~~~~~~~li~De~~~~g~~~---------~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~ 223 (393)
T 3kgw_A 170 FGELCHRYQCLLLVDSVASLGGVP---------IYMDQQGIDIMYSSSQKVLNAPPGISLISF 223 (393)
T ss_dssp HHHHHHHTTCEEEEECTTTTTTSC---------CCTTTTTCCEEEEESSSTTCCCSSCEEEEE
T ss_pred HHHHHHHcCCEEEEECCccccCcc---------cchhhcCCCEEEecCcccccCCCceeEEEE
Confidence 999999999999999999865221 111 1346899999999884 444 67665
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-17 Score=159.74 Aligned_cols=170 Identities=17% Similarity=0.138 Sum_probs=127.4
Q ss_pred ccCchHHHHHHHHHHHhHhCCC-----------cEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCc
Q 019931 145 ICGYTNYHRLLESCLADLKKKE-----------DCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNH 213 (334)
Q Consensus 145 ~~G~~~~~~~LE~~La~~~g~e-----------~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H 213 (334)
..|+.++.+++.+.++++.|.+ .+++++++++|+..++.+++++ ||.|++..+.|
T Consensus 77 ~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~--------------gd~Vlv~~p~y 142 (425)
T 2r2n_A 77 SAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINP--------------GDNVLLDEPAY 142 (425)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCT--------------TCEEEEESSCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCC--------------CCEEEEeCCCc
Confidence 4667778888888888877742 4666788899999999988764 78888888888
Q ss_pred hhhHHHHHHhhhcCCcEEEEeeC----CCHHHHHHHHhcCC---------CCcEEEEE-cCCCCCCCCccCHH---HHHH
Q 019931 214 ASIIDGIRIAERTKMVEVFVYKH----CDMSHLKTLLSCCT---------MRKKVVVT-DSLFSMDGDFAPMV---ELVK 276 (334)
Q Consensus 214 ~s~~~g~~ls~~~~g~~v~~~~~----~D~~~Le~~l~~~~---------~~~~lVv~-e~v~n~~G~~~pL~---~L~e 276 (334)
......++.. |++++.++. .|+++|++++++.+ .++++|++ .+++||+|.+.|.+ +|++
T Consensus 143 ~~~~~~~~~~----g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~ 218 (425)
T 2r2n_A 143 SGTLQSLHPL----GCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYE 218 (425)
T ss_dssp HHHHHHHGGG----TCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHc----CCEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHH
Confidence 8887777665 788888775 38899999997321 35677755 78999999998855 8999
Q ss_pred HHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 277 LRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 277 la~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
+|++||++||+||+|+...++.........++. .+.+|+++||||+|| .| ||++++
T Consensus 219 ~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~i~~~s~SK~~~-~GlRiG~~~~~ 277 (425)
T 2r2n_A 219 LARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDV-DGRVIRADSFSKIIS-SGLRIGFLTGP 277 (425)
T ss_dssp HHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCT-TSCEEEEEESTTTTC-STTCCEEEEEE
T ss_pred HHHHcCCEEEEECCcccccCCCCCCCCccccCC-CCCEEEEccchhhcc-CccceEEEecC
Confidence 999999999999999975553211111111221 234689999999998 66 888763
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-18 Score=163.80 Aligned_cols=196 Identities=19% Similarity=0.177 Sum_probs=134.3
Q ss_pred eeEEEeecC-ccCCCCCCHHHHHHHHHhc-----CCCCccccccCchHHHHHHH----HHHHhHhCCCcE-EEeccHHHH
Q 019931 109 KRLLLFSGN-DYLGLSSHPTIAKAAARHG-----MGPRGSALICGYTNYHRLLE----SCLADLKKKEDC-LLCPTGFAA 177 (334)
Q Consensus 109 ~~~l~f~sn-~yLgl~~~p~v~~a~~~~g-----~g~~~sr~~~G~~~~~~~LE----~~La~~~g~e~a-lv~~sG~~A 177 (334)
++++||.++ +++ +|.|++++.++- .+.+.++...|.. .+..+| +++++++|.+.. +++++|++|
T Consensus 23 ~~~i~~~~~~~~~----~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~-~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a 97 (407)
T 2dkj_A 23 REGLELIASENFV----SKQVREAVGSVLTNKYAEGYPGARYYGGCE-VIDRVESLAIERAKALFGAAWANVQPHSGSQA 97 (407)
T ss_dssp HTSEECCTTCCCC----CHHHHHHHTSGGGGCCCCEETTEESSSCCH-HHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred hcceeeccCCCCC----CHHHHHHHHhhhhcCcccCCCcccccCCch-HHHHHHHHHHHHHHHHhCCCcceEEecchHHH
Confidence 567887665 555 899999886542 1222233333543 344555 499999998876 556899999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhH---HHHHHhhhcCCcEEEEee------CCCHHHHHHHHhc
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASII---DGIRIAERTKMVEVFVYK------HCDMSHLKTLLSC 248 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~---~g~~ls~~~~g~~v~~~~------~~D~~~Le~~l~~ 248 (334)
+..++.++..+ ||.|++..+.|.++. ..+..... ....+.++ ..|+++|++++++
T Consensus 98 ~~~~~~~~~~~--------------gd~Vl~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~d~~~l~~~l~~ 161 (407)
T 2dkj_A 98 NMAVYMALMEP--------------GDTLMGMDLAAGGHLTHGSRVNFSGK--LYKVVSYGVRPDTELIDLEEVRRLALE 161 (407)
T ss_dssp HHHHHHHHCCT--------------TCEEEEECGGGTCCGGGTCTTSHHHH--HSEEEEECCCTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHhcCC--------------CCEEEEecccccCccchHHHHHhcCc--eEEEEecCCCcccCccCHHHHHHHHhh
Confidence 99999988654 778888888887663 22222210 12444553 2489999999974
Q ss_pred CCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc-CC
Q 019931 249 CTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG-CQ 327 (334)
Q Consensus 249 ~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G-~~ 327 (334)
. ++++|++..++|+ .+.|+++|.++|++||++||+||+|+.|.... |... ......|+++.||||+++ ..
T Consensus 162 ~--~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~~~----~~~~~~di~~~s~sK~l~g~~ 232 (407)
T 2dkj_A 162 H--RPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAA-GLHP----NPLPYAHVVTSTTHKTLRGPR 232 (407)
T ss_dssp H--CCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT-TCSC----CCTTTCSEEEEESSGGGCCCS
T ss_pred c--CCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEcccccccccc-CccC----CccccccEEEEeccccCCCCC
Confidence 2 5677777555554 67899999999999999999999999865432 2111 111236899999999994 67
Q ss_pred ccEEeeC
Q 019931 328 GGFIACR 334 (334)
Q Consensus 328 GG~i~~~ 334 (334)
||+++++
T Consensus 233 ~G~~~~~ 239 (407)
T 2dkj_A 233 GGLILSN 239 (407)
T ss_dssp CEEEEES
T ss_pred ceEEEEC
Confidence 8998864
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=160.75 Aligned_cols=174 Identities=15% Similarity=0.172 Sum_probs=132.9
Q ss_pred CHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHH-hhhhhhccCCCccCCCCC
Q 019931 125 HPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAV-GNIASLLAGDEKSFKDEK 203 (334)
Q Consensus 125 ~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al-~~~~~~~~~~~~~~~~~g 203 (334)
+|++++++.+.-... .+.+..+...+|+++++++++.++++++++|++|+..++.++ .++ |
T Consensus 35 ~~~~~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~--------------g 96 (391)
T 3dr4_A 35 DGNERDYVLECMDTT----WISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGP--------------G 96 (391)
T ss_dssp CSSHHHHHHHHHHHT----CCSSCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCT--------------T
T ss_pred CHHHHHHHHHHHHcC----CccCCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCC--------------c
Confidence 467777665432110 112345778999999999999999999999999999999987 543 7
Q ss_pred eEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHH
Q 019931 204 IAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKL 277 (334)
Q Consensus 204 d~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~el 277 (334)
|.|++..+.|.+....++.. |++++.++.+ |+++|++++++ ++++|++ .|++|.+.|+++|.++
T Consensus 97 d~vl~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~v~~---~n~tG~~~~~~~i~~l 166 (391)
T 3dr4_A 97 DEVIVPSLTYIASANSVTYC----GATPVLVDNDPRTFNLDAAKLEALITP---RTKAIMP---VHLYGQICDMDPILEV 166 (391)
T ss_dssp CEEEEESSSCTHHHHHHHHT----TCEEEEECBCTTTCSBCGGGSGGGCCT---TEEEECC---BCGGGCCCCHHHHHHH
T ss_pred CEEEECCCchHHHHHHHHHC----CCEEEEEecCccccCcCHHHHHHhcCC---CceEEEE---ECCCCChhhHHHHHHH
Confidence 88999999999988888766 8888888765 78888887764 6788874 5688999999999999
Q ss_pred HHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCc--cccc-CCccEEee
Q 019931 278 RRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLS--KAAG-CQGGFIAC 333 (334)
Q Consensus 278 a~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sls--Ka~G-~~GG~i~~ 333 (334)
|++||++||+|++|+.|.... +. ..+..+ |+++.||+ |+++ +.||++++
T Consensus 167 ~~~~~~~li~D~a~~~g~~~~-~~----~~~~~~--di~~~S~s~~K~l~~g~gg~~~~ 218 (391)
T 3dr4_A 167 ARRHNLLVIEDAAEAVGATYR-GK----KSGSLG--DCATFSFFGNAIITTGEGGMITT 218 (391)
T ss_dssp HHHTTCEEEEECTTCTTCEET-TE----ETTSSS--SEEEEECBTTSSSCCBSCEEEEE
T ss_pred HHHcCCEEEEECcccccceEC-Ce----eecccC--CEEEEECCCCCcCCcCCeEEEEE
Confidence 999999999999999875421 11 122222 57777866 9996 46788765
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=163.11 Aligned_cols=182 Identities=16% Similarity=0.160 Sum_probs=130.7
Q ss_pred CHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCe
Q 019931 125 HPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKI 204 (334)
Q Consensus 125 ~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd 204 (334)
||++++++.+.. + ...++..+...+|++++++++|.+..+++++|++|+..+++++..++ ...
T Consensus 28 ~p~v~~ai~~~~-~----~~~~~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~g------------~~~ 90 (359)
T 3pj0_A 28 LTEALQNIDDNL-E----SDIYGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRK------------ENR 90 (359)
T ss_dssp HHHHTTTSCTTC-B----CCBTTBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHH------------TCC
T ss_pred CHHHHHHHHhhc-c----cCcccCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhcC------------CCc
Confidence 688888776521 1 12345568889999999999999988888999999999999988762 122
Q ss_pred EEEEcCCCchhhHH--HH-HHhhhcCCcEEEEeeCC----CHHHHHHHHhcCCCCcEEEEEcCCCCCC-CCccCHHH---
Q 019931 205 AIFSDALNHASIID--GI-RIAERTKMVEVFVYKHC----DMSHLKTLLSCCTMRKKVVVTDSLFSMD-GDFAPMVE--- 273 (334)
Q Consensus 205 ~Vl~d~~~H~s~~~--g~-~ls~~~~g~~v~~~~~~----D~~~Le~~l~~~~~~~~lVv~e~v~n~~-G~~~pL~~--- 273 (334)
+|+++...|..... .. ... +.+++.++.. |+++|+++ . +++++|++++++|++ |.+.|.++
T Consensus 91 vvi~~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~~l~~ 162 (359)
T 3pj0_A 91 RVAYHPLSHLEIHEQDGLKELQ----QITPLLLGTANQLLTIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFEELEK 162 (359)
T ss_dssp EEEECTTCHHHHSSTTHHHHHH----CCEEEECSCTTSCCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHHHHHH
T ss_pred EEEEeccceeeehhcchHHHhc----CceEEecCCcCCCcCHHHHHhc-c---CCceEEEEEecccCCCcccCCHHHHHH
Confidence 57777777765432 11 234 7888887754 78888776 2 478999999998886 78878555
Q ss_pred HHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC-CccEEeeC
Q 019931 274 LVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC-QGGFIACR 334 (334)
Q Consensus 274 L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~-~GG~i~~~ 334 (334)
|+++|++||++||+|++|..+.....+..... + ....|+++.||||++++ .||+++++
T Consensus 163 l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~-~--~~~~d~~~~s~sK~~~~~~gg~~~~~ 221 (359)
T 3pj0_A 163 ISEYCHEQGISLHLDGARLWEITPFYQKSAEE-I--CALFDSVYVSFYKGIGGIAGAILAGN 221 (359)
T ss_dssp HHHHHHHHTCEEEEEETTCGGGHHHHTCCHHH-H--HTTCSEEEEESSSTTCCSSCEEEEEC
T ss_pred HHHHHHHcCCEEEEECcchhcchhhhCCCHHH-h--hccCCEEEEeccccCCCcceEEEECC
Confidence 59999999999999999976543211211111 1 13468889999999965 45677653
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=158.33 Aligned_cols=189 Identities=13% Similarity=0.079 Sum_probs=133.6
Q ss_pred eEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC------CcEEEeccHHHHHHHHHH
Q 019931 110 RLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK------EDCLLCPTGFAANMAVIV 183 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~------e~alv~~sG~~An~~ai~ 183 (334)
+.++|..+- ..-+|++++++.++..... .........+++++++++++. +.++++++|++|+..++.
T Consensus 5 ~~~~~~p~p---~~~~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~ 77 (385)
T 2bkw_A 5 VDTLLIPGP---IILSGAVQKALDVPSLGHT----SPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFAS 77 (385)
T ss_dssp CCEECSSSS---CCCCHHHHHTTSCCCCCTT----SHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHH
T ss_pred cceeecCCC---cCchHHHHHHHhccccccC----CHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHH
Confidence 345555552 2346888888776543211 111123457788899998875 356777999999999999
Q ss_pred HHh---hhhhhccCCCccCCCCCeEE-EEcC-CCchhhHHHHHHhhhcCCcEEEEeeC------CCHHHHHHHHhcCCCC
Q 019931 184 AVG---NIASLLAGDEKSFKDEKIAI-FSDA-LNHASIIDGIRIAERTKMVEVFVYKH------CDMSHLKTLLSCCTMR 252 (334)
Q Consensus 184 al~---~~~~~~~~~~~~~~~~gd~V-l~d~-~~H~s~~~g~~ls~~~~g~~v~~~~~------~D~~~Le~~l~~~~~~ 252 (334)
++. ++ ||.| +.+. .+|.++...++.. |.+++.++. .|+++|++++++ .+
T Consensus 78 ~~~~~~~~--------------gd~vlv~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~~d~~~l~~~l~~--~~ 137 (385)
T 2bkw_A 78 NFILSKAP--------------NKNVLVVSTGTFSDRFADCLRSY----GAQVDVVRPLKIGESVPLELITEKLSQ--NS 137 (385)
T ss_dssp HHSCTTCS--------------CCEEEEECSSHHHHHHHHHHHHT----TCEEEEECCSSTTSCCCHHHHHHHHHH--SC
T ss_pred HHhccCCC--------------CCeEEEEcCCcchHHHHHHHHHc----CCceEEEecCCCCCCCCHHHHHHHHhc--CC
Confidence 876 43 5655 4434 3444443444444 788888876 389999999975 25
Q ss_pred cEEEEEcCCCCCCCCccCHHHHHHHHHHc--CCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCccccc-CCc
Q 019931 253 KKVVVTDSLFSMDGDFAPMVELVKLRRKY--GFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAG-CQG 328 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~pL~~L~ela~k~--ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G-~~G 328 (334)
+++|++++++|++|.+.|+++|.++|++| |++||+|++|+.|... +++. .++|+++.|+||+++ +.|
T Consensus 138 ~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~~~~~G 208 (385)
T 2bkw_A 138 YGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEE---------FEFDEWGVDFALTASQKAIGAPAG 208 (385)
T ss_dssp CSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSC---------CCTTTTTCSEEEEESSSTTCCCSC
T ss_pred CCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcc---------ccccccCceEEEecCccccccCCc
Confidence 78999999999999999999999999999 9999999999865321 1111 246899999999875 466
Q ss_pred -cEEeeC
Q 019931 329 -GFIACR 334 (334)
Q Consensus 329 -G~i~~~ 334 (334)
|+++++
T Consensus 209 ~G~~~~~ 215 (385)
T 2bkw_A 209 LSISLCS 215 (385)
T ss_dssp EEEEEEC
T ss_pred ceEEEEc
Confidence 777653
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-17 Score=163.64 Aligned_cols=207 Identities=12% Similarity=0.054 Sum_probs=139.9
Q ss_pred EEEeecCccCCCCCC----HHHHHHHHHhcCCCCccccccCchHHHHHHHHH----HHhHhCC---CcEEEeccHHHHHH
Q 019931 111 LLLFSGNDYLGLSSH----PTIAKAAARHGMGPRGSALICGYTNYHRLLESC----LADLKKK---EDCLLCPTGFAANM 179 (334)
Q Consensus 111 ~l~f~sn~yLgl~~~----p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~----La~~~g~---e~alv~~sG~~An~ 179 (334)
.+++.++.||++... |.+.+++..+..+. +....+..+...++|++ |++++|. +.++++++|++||.
T Consensus 95 ~~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~n~--~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~ 172 (497)
T 2qma_A 95 AIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQ--SMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQ 172 (497)
T ss_dssp SCCTTSTTBCSSSCCCCBHHHHHHHHHHHHHCC--CTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHH
T ss_pred CCCCCCCCeeEeCCCCCcHHHHHHHHHHHhhcc--cccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHH
Confidence 457888889998854 45555554443332 22334445555666666 8888886 45788899999999
Q ss_pred HHHHHHhhhh-------hhccCCCccCCCCCe-EEEEcCCCchhhHHHHHHhhhcCCc-EEEEeeCC-----CHHHHHHH
Q 019931 180 AVIVAVGNIA-------SLLAGDEKSFKDEKI-AIFSDALNHASIIDGIRIAERTKMV-EVFVYKHC-----DMSHLKTL 245 (334)
Q Consensus 180 ~ai~al~~~~-------~~~~~~~~~~~~~gd-~Vl~d~~~H~s~~~g~~ls~~~~g~-~v~~~~~~-----D~~~Le~~ 245 (334)
.++.++.... ....++.... .++ .|+++...|.++..++++... +. +++.++.+ |+++|+++
T Consensus 173 ~al~~ar~~~~~~~~~~~~~~~G~~~~--~g~~~v~~s~~~h~s~~~~~~~~g~--g~~~v~~v~~~~~~~~d~~~L~~~ 248 (497)
T 2qma_A 173 MGLMLARDWIADKLSGHSIQKLGLPDY--ADKLRIVCSKKSHFTVQKSASWMGL--GEKAVMTVDANADGTMDITKLDEV 248 (497)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCSCGG--GGGEEEEEETTSCTHHHHHHHHTTS--CGGGEEEECBCTTSSBCGGGHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhcccccc--cCCeEEEECCCchHHHHHHHHHcCC--CcccEEEEecCCCCcCCHHHHHHH
Confidence 9998742100 0000000000 034 788888999999988887621 22 67777765 89999999
Q ss_pred HhcCC-CC--cEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcc
Q 019931 246 LSCCT-MR--KKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSK 322 (334)
Q Consensus 246 l~~~~-~~--~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsK 322 (334)
+++.. .+ +.+|++..+.|++|.+.|+++|.++|++||++|++|+||+.+.+....... ..++ .++|+++.|++|
T Consensus 249 i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~--~~gi-~~~D~i~~s~hK 325 (497)
T 2qma_A 249 IAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSR--LKGV-ERAHSISVDFHK 325 (497)
T ss_dssp HHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGG--GTTG-GGCSEEEEETTT
T ss_pred HHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHh--hcCc-ccCCEEEEcchh
Confidence 97531 12 347888888999999999999999999999999999999977653221111 1233 356899999999
Q ss_pred cccC
Q 019931 323 AAGC 326 (334)
Q Consensus 323 a~G~ 326 (334)
.+++
T Consensus 326 ~l~~ 329 (497)
T 2qma_A 326 LFYQ 329 (497)
T ss_dssp TTCC
T ss_pred ccCC
Confidence 8865
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.5e-17 Score=161.52 Aligned_cols=191 Identities=16% Similarity=0.147 Sum_probs=139.5
Q ss_pred CHHHHHHHHH-hcC----CCCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHHHHHHHHHHh-hhhhhccC
Q 019931 125 HPTIAKAAAR-HGM----GPRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAANMAVIVAVG-NIASLLAG 194 (334)
Q Consensus 125 ~p~v~~a~~~-~g~----g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~An~~ai~al~-~~~~~~~~ 194 (334)
++.+++++.+ ... +..++....|...+++++++.+.+..| .+.++++++|++|+..++.+++ .+
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~------ 181 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNE------ 181 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCST------
T ss_pred CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCC------
Confidence 5556664433 222 344566666776777777777766655 3578888999999999999886 43
Q ss_pred CCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEee-------CCCHHHHHHHHhcC---CCCcEEEEEcCCCCC
Q 019931 195 DEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYK-------HCDMSHLKTLLSCC---TMRKKVVVTDSLFSM 264 (334)
Q Consensus 195 ~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~-------~~D~~~Le~~l~~~---~~~~~lVv~e~v~n~ 264 (334)
||.|+++.+.|.++...++.. |++++.|+ +.|+++|++++++. ..++++|++.+++||
T Consensus 182 --------gd~Vlv~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NP 249 (500)
T 3tcm_A 182 --------KDGILVPIPQYPLYSASIALH----GGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNP 249 (500)
T ss_dssp --------TEEEEEEESCCTHHHHHHHHT----TCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTT
T ss_pred --------CCEEEEeCCCcHhHHHHHHHc----CCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCC
Confidence 889999999999998888877 88888887 55899999999753 125788888899999
Q ss_pred CCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcc--cc---cccCC-CCCc-cEEEecCcccc-cC---CccE
Q 019931 265 DGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG--VA---EQFNC-ERDV-DICVGTLSKAA-GC---QGGF 330 (334)
Q Consensus 265 ~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g--~~---~~~~~-~~~~-Div~~SlsKa~-G~---~GG~ 330 (334)
+|.+.+ +++|+++|++||+++|+||+|+.++++..... +. ..++. ..++ .|+++||||+| |. .+||
T Consensus 250 tG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~ 329 (500)
T 3tcm_A 250 TGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGY 329 (500)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEE
T ss_pred CcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEE
Confidence 999877 66777789999999999999998877532211 11 12222 2222 37789999999 43 5588
Q ss_pred Eee
Q 019931 331 IAC 333 (334)
Q Consensus 331 i~~ 333 (334)
+++
T Consensus 330 ~~~ 332 (500)
T 3tcm_A 330 FEI 332 (500)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=165.95 Aligned_cols=208 Identities=12% Similarity=0.063 Sum_probs=145.1
Q ss_pred EeecCccCCCC--CCHHHHHHH----HHhcC-CCCccccccCchHHHHHHHHHHHhHhCCC----cEEEeccHHHHHHHH
Q 019931 113 LFSGNDYLGLS--SHPTIAKAA----ARHGM-GPRGSALICGYTNYHRLLESCLADLKKKE----DCLLCPTGFAANMAV 181 (334)
Q Consensus 113 ~f~sn~yLgl~--~~p~v~~a~----~~~g~-g~~~sr~~~G~~~~~~~LE~~La~~~g~e----~alv~~sG~~An~~a 181 (334)
.+.++.++|.. .++.+.+++ .++.. +...+....|...+.+++.+.+++++|.+ .++++++|++|+..+
T Consensus 63 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a 142 (497)
T 3mc6_A 63 QWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLA 142 (497)
T ss_dssp CGGGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHH
T ss_pred CCCCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHH
Confidence 34455666653 456776644 33322 11222223344566677888888898876 578889999999999
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEE
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKV 255 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~l 255 (334)
+.++.....- .++ ..++.|++....|.++...++.. |.+++.++.+ |+++|++++++ ++++
T Consensus 143 ~~a~~~~~~~-~~g-----~~~~~Vi~~~~~h~~~~~~~~~~----G~~~~~v~~~~~~~~~d~~~l~~~i~~---~~~~ 209 (497)
T 3mc6_A 143 CLSAKMYALH-HRG-----ITEPEIIAPVTAHAGFDKAAYYF----GMKLRHVELDPTTYQVDLGKVKKFINK---NTVL 209 (497)
T ss_dssp HHHHHHHHHH-HSC-----CSSCEEEEETTSCHHHHHHHHHS----CCEEEEECBCTTTCSBCTTTTGGGCCS---SEEE
T ss_pred HHHHHHHHHh-cCC-----CCCceEEEeCCccHHHHHHHHHc----CCeEEEEecCcccCcCCHHHHHHHHhh---CCEE
Confidence 9987652100 000 01378888999999999888877 8888887743 57888888764 6899
Q ss_pred EEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCccccccc---CCCcccccccC-CCCCccEEEecCcccc-cCCc-c
Q 019931 256 VVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCG---KNGGGVAEQFN-CERDVDICVGTLSKAA-GCQG-G 329 (334)
Q Consensus 256 Vv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G---~~G~g~~~~~~-~~~~~Div~~SlsKa~-G~~G-G 329 (334)
|++++++|++|.+.|+++|.++|++||++||+|++|+.++.. ..|.+....+. ...++|+++.|++|.+ ++.| |
T Consensus 210 v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g 289 (497)
T 3mc6_A 210 LVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSS 289 (497)
T ss_dssp EEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCE
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCce
Confidence 999999999999999999999999999999999999855321 12323221122 2356899999999996 4444 6
Q ss_pred EEee
Q 019931 330 FIAC 333 (334)
Q Consensus 330 ~i~~ 333 (334)
++++
T Consensus 290 ~~~~ 293 (497)
T 3mc6_A 290 VIMY 293 (497)
T ss_dssp EEEC
T ss_pred eEEe
Confidence 6654
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-17 Score=162.72 Aligned_cols=180 Identities=10% Similarity=0.070 Sum_probs=131.6
Q ss_pred CCccccccCchHHHHHHHHHHHhHhC-----CCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCc
Q 019931 139 PRGSALICGYTNYHRLLESCLADLKK-----KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNH 213 (334)
Q Consensus 139 ~~~sr~~~G~~~~~~~LE~~La~~~g-----~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H 213 (334)
..++....|...+.+++++.+.++.| .+++++++++++|+..++.+++.+++ .++|.|+++.+.|
T Consensus 122 ~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd----------~~~d~Vlv~~p~y 191 (498)
T 3ihj_A 122 LGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGG----------KSRTGVMIPIPQY 191 (498)
T ss_dssp ------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCG----------GGSEEEEEEESCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCC----------CCCCEEEEeCCCc
Confidence 34566677777888888888887764 35788899999999999998876410 0146899999999
Q ss_pred hhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCC--CcEEEEEcCCCCCCCCccC---HHHHHHHHHHc
Q 019931 214 ASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTM--RKKVVVTDSLFSMDGDFAP---MVELVKLRRKY 281 (334)
Q Consensus 214 ~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~--~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ 281 (334)
.++...+... |++++.|+++ |+++|++++++.+. ++++|++.+++||+|.+.+ +++|+++|++|
T Consensus 192 ~~~~~~~~~~----g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~ 267 (498)
T 3ihj_A 192 PLYSAVISEL----DAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEE 267 (498)
T ss_dssp THHHHHHHHT----TCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHc----CCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHc
Confidence 9998888877 8899988865 89999999976321 4788888899999999876 67799999999
Q ss_pred CCEEEEecCcccccccCCCc--ccccc---cCCC--CCc-cEEEecCcccc-cC---CccEEe
Q 019931 282 GFLLVLDDAHGTFVCGKNGG--GVAEQ---FNCE--RDV-DICVGTLSKAA-GC---QGGFIA 332 (334)
Q Consensus 282 ga~LivDeAh~~Gv~G~~G~--g~~~~---~~~~--~~~-Div~~SlsKa~-G~---~GG~i~ 332 (334)
|++||+||+|+.++++.... .+... .+.. .++ .|+++||||+| |. .+||++
T Consensus 268 ~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~ 330 (498)
T 3ihj_A 268 KLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYME 330 (498)
T ss_dssp TCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEE
T ss_pred CcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEE
Confidence 99999999999888764211 11110 0000 112 37889999999 43 568886
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=163.84 Aligned_cols=203 Identities=12% Similarity=0.088 Sum_probs=138.2
Q ss_pred eeEEEeecCccCCCCCCHHHHH----HHHHhcCC-CCcccc-ccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAK----AAARHGMG-PRGSAL-ICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMA 180 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~----a~~~~g~g-~~~sr~-~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ 180 (334)
+.++.|.+|. +|.. ++.+.+ ++.+|+.. ..+++. ..+.....+++++++++++|.+ .+++++++++++..
T Consensus 66 ~~~iyld~~~-~g~~-p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~ 143 (465)
T 3e9k_A 66 ENAIYFLGNS-LGLQ-PKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHL 143 (465)
T ss_dssp CBCEECBTTT-SCCE-ETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHH
T ss_pred CCeEEecCCc-cCCC-hHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHH
Confidence 4555666664 6754 444544 34444321 111111 1233456688999999999964 67788888999999
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEE-----EEeeC-----CCHHHHHHHHhcCC
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEV-----FVYKH-----CDMSHLKTLLSCCT 250 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v-----~~~~~-----~D~~~Le~~l~~~~ 250 (334)
++.++.+++ ++++.|+++...|.+....+.......|.++ ...+. .|+++|++++++..
T Consensus 144 ~~~~~~~~~-----------~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~ 212 (465)
T 3e9k_A 144 LMLSFFKPT-----------PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEG 212 (465)
T ss_dssp HHHHHCCCC-----------SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHG
T ss_pred HHHHhcccc-----------CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcC
Confidence 998887642 2367788888888886554331111114442 23332 28999999997432
Q ss_pred CCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccc--cCC
Q 019931 251 MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAA--GCQ 327 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~--G~~ 327 (334)
+++++|++++++|++|.+.|+++|.++|++||+++++|++|+.|.... ++ ..++|++++|++|.+ |..
T Consensus 213 ~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~---------~~~~~~~D~~~~s~~K~l~~gp~ 283 (465)
T 3e9k_A 213 DSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVEL---------YLHDWGVDFACWCSYKYLNAGAG 283 (465)
T ss_dssp GGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCC---------CHHHHTCCEEEECSSSTTCCCTT
T ss_pred CCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCC---------chhhcCCCEEEECcccccccCCC
Confidence 378999999999999999999999999999999999999999765321 11 135789999999999 444
Q ss_pred c-cEEee
Q 019931 328 G-GFIAC 333 (334)
Q Consensus 328 G-G~i~~ 333 (334)
| |++.+
T Consensus 284 ~~g~l~~ 290 (465)
T 3e9k_A 284 GIAGAFI 290 (465)
T ss_dssp CCCEEEE
T ss_pred ceEEEEE
Confidence 4 66554
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=158.91 Aligned_cols=178 Identities=13% Similarity=0.119 Sum_probs=133.5
Q ss_pred CCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHH-HhHhC-CCcEEEeccHHHHHHHHHHHH-hhhhhhccCCCc
Q 019931 122 LSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCL-ADLKK-KEDCLLCPTGFAANMAVIVAV-GNIASLLAGDEK 197 (334)
Q Consensus 122 l~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~L-a~~~g-~e~alv~~sG~~An~~ai~al-~~~~~~~~~~~~ 197 (334)
+...|.+++++.+.- .|. ++++.+...+||+++ ++++| .+++++++||++|+..++.++ .++
T Consensus 12 ~~~~~~i~~a~~~~~~~~~-----~~~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~--------- 77 (377)
T 3ju7_A 12 TVPVIEYLDELKEIDASHI-----YTNYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKK--------- 77 (377)
T ss_dssp CCCGGGGHHHHHHHHHHTC-----CSSSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTT---------
T ss_pred CCCcHHHHHHHHHHHHcCC-----cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCC---------
Confidence 455677777765532 221 222357789999999 99999 889999999999999999887 543
Q ss_pred cCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHH-hcCCCCcEEEEEcCCCCCCCCccC
Q 019931 198 SFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLL-SCCTMRKKVVVTDSLFSMDGDFAP 270 (334)
Q Consensus 198 ~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l-~~~~~~~~lVv~e~v~n~~G~~~p 270 (334)
||.|++..+.|.++...+... |++++.++.+ |+++|++++ ++. .++++|+ +.|++|.+.|
T Consensus 78 -----Gd~Vi~~~~~~~~~~~~~~~~----G~~~~~v~~~~~~~~~d~~~l~~~i~~~~-~~tk~v~---~~~~~G~~~~ 144 (377)
T 3ju7_A 78 -----GKYALMPSFTFPATPLAAIWC----GLEPYFIDISIDDWYMDKTVLWDKIEELK-EEVAIVV---PYATFGSWMN 144 (377)
T ss_dssp -----CCEEEEESSSCTHHHHHHHHT----TCEEEEECBCTTTCSBCHHHHHHHHHHHG-GGEEEEC---CBCGGGBCCC
T ss_pred -----cCEEEECCCCcHHHHHHHHHc----CCEEEEEecCCccCCcCHHHHHHHHhcCC-CCceEEE---EECCCCCccC
Confidence 889999999999988888776 8888888643 899999988 431 1288887 4567899999
Q ss_pred HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecC--cccccC-CccEEee
Q 019931 271 MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTL--SKAAGC-QGGFIAC 333 (334)
Q Consensus 271 L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sl--sKa~G~-~GG~i~~ 333 (334)
+++|.++|+ ||++||+|++|++|..-. +. ..+ ....|+.+.|| +|.+++ .||++++
T Consensus 145 ~~~i~~la~-~~~~vi~D~a~a~g~~~~-~~----~~g-~~~~d~~~~S~~~~K~l~~g~gG~~~~ 203 (377)
T 3ju7_A 145 LEEYEELEK-KGVPVVVDAAPGFGLMNG-GM----HYG-QDFSGMIIYSFHATKPFGIGEGGLIYS 203 (377)
T ss_dssp CHHHHHHHH-TTCCBEEECTTCTTCEET-TE----ETT-TTCSSEEEEECBTTSSSCCBSCEEEEE
T ss_pred HHHHHHHHh-cCCEEEEECCCccCCeEC-CE----ecc-CCCCcEEEEECCCCCcCCCCCcEEEEE
Confidence 999999999 999999999999875411 11 111 11135666676 699975 5688765
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-17 Score=155.66 Aligned_cols=188 Identities=16% Similarity=0.050 Sum_probs=131.7
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~ 186 (334)
+++|||++|. -.+..+|.+ ++ ..... +.... ..+|+++++++++.+ .+++++++++|+..++++++
T Consensus 29 ~~~i~l~~~~-~~~~~~~~v--a~----~~~~~----Y~~~~-~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~ 96 (356)
T 1fg7_A 29 NGDVWLNANE-YPTAVEFQL--TQ----QTLNR----YPECQ-PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC 96 (356)
T ss_dssp TCSEECSSCC-CSSCCCCCC--CC----CCTTS----CCCSS-CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC
T ss_pred CceEEeeCCC-CCCCCCHhH--hh----hhhcc----CCCcc-HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh
Confidence 4689999985 234445655 11 11111 11112 478999999999864 57777888999999999887
Q ss_pred hhhhhccCCCccCCCCC-eEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcC
Q 019931 187 NIASLLAGDEKSFKDEK-IAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDS 260 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~g-d~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~ 260 (334)
.+ | |.|++..+.|......++.. |.+++.++. .|+++|++.++ ++++|++++
T Consensus 97 ~~--------------g~d~Vl~~~p~~~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~i~----~~~~v~l~~ 154 (356)
T 1fg7_A 97 EP--------------GKDAILYCPPTYGMYSVSAETI----GVECRTVPTLDNWQLDLQGISDKLD----GVKVVYVCS 154 (356)
T ss_dssp CT--------------TTCEEEECSSSCTHHHHHHHHH----TCEEEECCCCTTSCCCHHHHHTSCT----TEEEEEEES
T ss_pred CC--------------CCCEEEEeCCChHHHHHHHHHc----CCEEEEeeCCCCCCCCHHHHHHHhc----CCCEEEEeC
Confidence 54 6 88888888888888777766 788888875 26777766653 578888899
Q ss_pred CCCCCCCccCHHHHHHHHHH--cCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 261 LFSMDGDFAPMVELVKLRRK--YGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 261 v~n~~G~~~pL~~L~ela~k--~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
++||+|.+.|.++|.++++. +|+++|+||+|+.+. + +..+....+ ..+.++++.||||+||+.| ||++++
T Consensus 155 p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~--~-~~~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 229 (356)
T 1fg7_A 155 PNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFC--P-QASLAGWLA-EYPHLAILRTLSKAFALAGLRCGFTLAN 229 (356)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGS--G-GGCSGGGTT-TCTTEEEEEESSSTTCCGGGCCEEEEEC
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCCEEEEEccchhhc--C-CCcHHHHHh-hCCCEEEEecchHhhcCchhhhEEEEeC
Confidence 99999999886555444443 899999999998642 1 112222112 1234799999999998766 888764
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=157.51 Aligned_cols=188 Identities=10% Similarity=0.007 Sum_probs=130.0
Q ss_pred eEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC---cEEE-eccHHHHHHHHHHHH
Q 019931 110 RLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE---DCLL-CPTGFAANMAVIVAV 185 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e---~alv-~~sG~~An~~ai~al 185 (334)
...||..+. ...+|+|++++.+.-... + ..+..+..+++++++++++|.+ .+++ ++||++|+..+++++
T Consensus 19 ~~~~~~pgp---~~~~~~v~~a~~~~~~~~---~-~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~ 91 (376)
T 3f0h_A 19 GMLNFTVGP---VMSSEEVRAIGAEQVPYF---R-TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNC 91 (376)
T ss_dssp SCEECSSSS---CCCCHHHHHHHTSCCCCC---S-SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHH
T ss_pred CceeecCCC---CCCcHHHHHHhcCCCCCC---C-CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhc
Confidence 344555443 235899999887643321 1 1223467789999999999975 4555 578899999999988
Q ss_pred hhhhhhccCCCccCCCCCeEEEEcCC-CchhhH-HHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEE
Q 019931 186 GNIASLLAGDEKSFKDEKIAIFSDAL-NHASII-DGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVT 258 (334)
Q Consensus 186 ~~~~~~~~~~~~~~~~~gd~Vl~d~~-~H~s~~-~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~ 258 (334)
.++ ||.|++... +|.... ..+... +++++.++. .|+++|+++++ +++++|++
T Consensus 92 ~~~--------------gd~vi~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~~~---~~~~~v~~ 150 (376)
T 3f0h_A 92 FTK--------------KDKVLVIDGGSFGHRFVQLCEIH----EIPYVALKLEHGKKLTKEKLYEYDN---QNFTGLLV 150 (376)
T ss_dssp CCT--------------TCCEEEEESSHHHHHHHHHHHHT----TCCEEEEECCTTCCCCHHHHHTTTT---SCCCEEEE
T ss_pred cCC--------------CCeEEEEeCChhhHHHHHHHHHc----CCceEEEeCCCCCCCCHHHHHHhhc---cCceEEEE
Confidence 764 565655543 333221 122222 666666653 37888888664 37889999
Q ss_pred cCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc-CCc-cEEee
Q 019931 259 DSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG-CQG-GFIAC 333 (334)
Q Consensus 259 e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G-~~G-G~i~~ 333 (334)
++++|++|.+.|+++|+++|++||++||+|++|+.+... .. ... .++|+++.|++|+|| +.| |++++
T Consensus 151 ~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~---~~-~~~----~~~d~~~~s~~K~l~~~~G~g~~~~ 219 (376)
T 3f0h_A 151 NVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADP---FN-MNE----CGADVMITGSQKVLACPPGISVIVL 219 (376)
T ss_dssp ESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSC---CC-HHH----HTCSEEEEETTTTTCCCSSCEEEEE
T ss_pred ecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCcc---cc-ccc----cCccEEEecCcccccCCCceEEEEE
Confidence 999999999999999999999999999999999875321 00 111 236899999999998 455 56654
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-17 Score=160.03 Aligned_cols=191 Identities=17% Similarity=0.144 Sum_probs=135.9
Q ss_pred CCHHHHHHHHHhcCCCCccc---cccCchHHHHHHHHHHHhHhCCCcEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccC
Q 019931 124 SHPTIAKAAARHGMGPRGSA---LICGYTNYHRLLESCLADLKKKEDCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSF 199 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr---~~~G~~~~~~~LE~~La~~~g~e~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~ 199 (334)
.+|.+.+++.+.-.....+. ...|...+..++++.+++++|.+.++++ ++|++|+..++.++... ...+++.
T Consensus 78 ~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~--~~~~Gd~-- 153 (474)
T 1wyu_B 78 YNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAY--HEDRGEG-- 153 (474)
T ss_dssp CCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHH--HHHTTCT--
T ss_pred CCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHH--HHhcCCc--
Confidence 35777776654322211111 2455667889999999999998876645 88899999877665320 0001100
Q ss_pred CCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCc-cCHHH
Q 019931 200 KDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDF-APMVE 273 (334)
Q Consensus 200 ~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~-~pL~~ 273 (334)
+ +.+.|++....|.+....+... |.+++.++.+ |+++|++++++ ++++|+++++ |++|.+ .|+++
T Consensus 154 ~-~r~~Vlv~~~~h~~~~~~~~~~----G~~vv~v~~~~~~~~d~~~L~~~i~~---~t~~v~~~~p-n~~G~~~~~l~~ 224 (474)
T 1wyu_B 154 R-TRRVVLVPDSAHGSNPATASMA----GYQVREIPSGPEGEVDLEALKRELGP---HVAALMLTNP-NTLGLFERRILE 224 (474)
T ss_dssp T-TCCEEEEETTSCTHHHHHHHHT----TCEEEEECBCTTSSBCHHHHHHHCST---TEEEEEECSS-CTTSCCCTTHHH
T ss_pred c-CCCEEEEeCCcChhhHHHHHHC----CCEEEEecCCCCCCcCHHHHHHhhCC---CceEEEEECC-CCCcccCCCHHH
Confidence 0 1237777889999988887776 8899888875 89999999864 6889988887 579988 69999
Q ss_pred HHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCC-------ccEEeeC
Q 019931 274 LVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQ-------GGFIACR 334 (334)
Q Consensus 274 L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~-------GG~i~~~ 334 (334)
|.++|++||++||+|++|+.+++|.. -...+ ++|++++|++|+|++. .|+++++
T Consensus 225 i~~l~~~~g~~li~Dea~~~~~~g~~---~~~~~----g~di~~~s~~K~~~~p~g~gG~~~G~~~~~ 285 (474)
T 1wyu_B 225 ISRLCKEAGVQLYYDGANLNAIMGWA---RPGDM----GFDVVHLNLHKTFTVPHGGGGPGSGPVGVK 285 (474)
T ss_dssp HHHHHHHHTCEEEEEGGGGGGTTTTC---CHHHH----TCSEEECCTTTTTCCCCTTSCCCCCCEEEC
T ss_pred HHHHHHHcCCEEEEeCchhhhhccCC---CcccC----CCcEEEEeCccccccCCCCCCCCeEEEEEc
Confidence 99999999999999999987765421 11112 3689999999999753 3677653
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6e-17 Score=155.48 Aligned_cols=182 Identities=16% Similarity=0.072 Sum_probs=132.0
Q ss_pred CCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCC
Q 019931 124 SHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEK 203 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~g 203 (334)
-+|++++++.+.-... .++..+...++|+++++++|.++++++++|++|+..++.++.... ....+++
T Consensus 13 ~~~~~~~a~~~~~~~~-----~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~-------~~~~~~g 80 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSK-----MFTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTK-------KPRLKKG 80 (390)
T ss_dssp CCHHHHHHHHHHHHHT-----CCSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSS-------SCSCCTT
T ss_pred CCHHHHHHHHHHHHcC-----CCCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhh-------hcCCCCc
Confidence 3788888775542210 122357789999999999999999999999999999998872100 0001247
Q ss_pred eEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHH
Q 019931 204 IAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKL 277 (334)
Q Consensus 204 d~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~el 277 (334)
|.|++....|.++...++.. |++++.++.+ |+++|++++++ ++++|++. ++.|.+.|+++|.++
T Consensus 81 ~~Vi~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~d~~~l~~~i~~---~~~~v~~~---~~~g~~~~~~~i~~l 150 (390)
T 3b8x_A 81 DEIIVPAVSWSTTYYPLQQY----GLRVKFVDIDINTLNIDIESLKEAVTD---STKAILTV---NLLGNPNNFDEINKI 150 (390)
T ss_dssp CEEEEESSSCHHHHHHHHHT----TCEEEEECBCTTTCSBCHHHHHHHCCT---TEEEEEEE---CGGGCCCCHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHc----CCEEEEEecCccccCcCHHHHHHHhCc---CCeEEEEE---CCccChhhHHHHHHH
Confidence 88999999999998888766 8888888764 78999998864 67877765 356888999999999
Q ss_pred HHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecC--ccccc-CCccEEeeC
Q 019931 278 RRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTL--SKAAG-CQGGFIACR 334 (334)
Q Consensus 278 a~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sl--sKa~G-~~GG~i~~~ 334 (334)
|++||++||+|++|+.|... .+ ..++.. .|+.+.|+ +|.++ +.||+++++
T Consensus 151 ~~~~~~~li~D~a~~~g~~~-~~----~~~g~~--~~~~~~s~~~~k~~~~g~gG~~~~~ 203 (390)
T 3b8x_A 151 IGGRDIILLEDNCESMGATF-NN----KCAGTF--GLMGTFSSFYSNHIATMEGGCIVTD 203 (390)
T ss_dssp HTTSCCEEEEECTTCTTCEE-TT----EETTSS--SSEEEEECCTTSSSCSSSCEEEEES
T ss_pred HHHcCCEEEEECcCcccCEE-CC----cccccc--cceEEEEccCCCCCccCCceEEEeC
Confidence 99999999999999987543 22 123332 24554443 56664 368888763
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-17 Score=156.21 Aligned_cols=177 Identities=11% Similarity=0.052 Sum_probs=129.6
Q ss_pred CCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC---cEEEeccHHHHHHHHHHHHhhhhhhccCCCccCC
Q 019931 124 SHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE---DCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFK 200 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e---~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~ 200 (334)
-+|.+++++.+.-.+. +.........++++++++++|.+ .++++++|++|+..++.+++++
T Consensus 29 ~~~~v~~a~~~~~~~~----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~------------ 92 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLSN----FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEE------------ 92 (396)
T ss_dssp CCHHHHHHTTSCCCCT----TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCT------------
T ss_pred CCHHHHHHhccccccC----CChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCC------------
Confidence 3688888776543221 11111245789999999999975 3667789999999999988754
Q ss_pred CCCeEEEEcCCCchhhH--HHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHH
Q 019931 201 DEKIAIFSDALNHASII--DGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVE 273 (334)
Q Consensus 201 ~~gd~Vl~d~~~H~s~~--~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~ 273 (334)
||.|++..+.|.+.. ..++.. |++++.++. .|+++|++++++. ++++|++++++|++|.+.|+++
T Consensus 93 --gd~vl~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~~~~ 164 (396)
T 2ch1_A 93 --GDRVLIAVNGIWAERAVEMSERY----GADVRTIEGPPDRPFSLETLARAIELH--QPKCLFLTHGDSSSGLLQPLEG 164 (396)
T ss_dssp --TCEEEEEESSHHHHHHHHHHHHT----TCEEEEEECCTTSCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECCCTT
T ss_pred --CCeEEEEcCCcccHHHHHHHHHc----CCceEEecCCCCCCCCHHHHHHHHHhC--CCCEEEEECCCCCCceecCHHH
Confidence 777888777887753 233333 788888773 5899999998742 4788899999999999999999
Q ss_pred HHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccC-Cc-cEEee
Q 019931 274 LVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGC-QG-GFIAC 333 (334)
Q Consensus 274 L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~-~G-G~i~~ 333 (334)
|.++|++||++||+||+|++|... ..+. .++|+++.|++|.+++ .| |++++
T Consensus 165 i~~l~~~~~~~li~Dea~~~g~~~---------~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~ 218 (396)
T 2ch1_A 165 VGQICHQHDCLLIVDAVASLCGVP---------FYMDKWEIDAVYTGAQKVLGAPPGITPISI 218 (396)
T ss_dssp HHHHHHHTTCEEEEECTTTBTTBC---------CCTTTTTCCEEECCCC-CCCCCSSCEEEEE
T ss_pred HHHHHHHcCCEEEEEccccccCCc---------cchhhcCcCEEEEcCCccccCCCCeEEEEE
Confidence 999999999999999999865221 1111 2358999999998764 34 66654
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=154.64 Aligned_cols=178 Identities=17% Similarity=0.069 Sum_probs=127.4
Q ss_pred CCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC---c-EEEeccHHHHHHHHHHHHhhhhhhccCCCcc
Q 019931 123 SSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE---D-CLLCPTGFAANMAVIVAVGNIASLLAGDEKS 198 (334)
Q Consensus 123 ~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e---~-alv~~sG~~An~~ai~al~~~~~~~~~~~~~ 198 (334)
..+|.|++++.++... ++ .........++++++++++|.+ + ++++++|++|+..++.++.
T Consensus 10 ~~~~~v~~a~~~~~~~---~~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~------------ 73 (353)
T 2yrr_A 10 PIPERVQKALLRPMRG---HL-DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD------------ 73 (353)
T ss_dssp CCCHHHHGGGGSCCCC---TT-CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS------------
T ss_pred CCCHHHHHHHhccccc---cc-CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc------------
Confidence 4579999988765432 11 1122355789999999999973 3 5666888999998887653
Q ss_pred CCCCCeEEEEcCCCchhh--HHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCH
Q 019931 199 FKDEKIAIFSDALNHASI--IDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPM 271 (334)
Q Consensus 199 ~~~~gd~Vl~d~~~H~s~--~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL 271 (334)
+ |.|++....|.+. ...++.. |.+++.++. .|+++|++++++. ++++|++++++|++|.+.|+
T Consensus 74 ---~-d~vl~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~~ 143 (353)
T 2yrr_A 74 ---R-GPVLVLVNGAFSQRVAEMAALH----GLDPEVLDFPPGEPVDPEAVARALKRR--RYRMVALVHGETSTGVLNPA 143 (353)
T ss_dssp ---C-CCEEEEECSHHHHHHHHHHHHT----TCCEEEEECCTTSCCCHHHHHHHHHHS--CCSEEEEESEETTTTEECCH
T ss_pred ---C-CcEEEEcCCCchHHHHHHHHHc----CCceEEEeCCCCCCCCHHHHHHHHHhC--CCCEEEEEccCCCcceecCH
Confidence 1 3455555566664 2222223 777877774 4899999999752 57889999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc-CCc-cEEeeC
Q 019931 272 VELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG-CQG-GFIACR 334 (334)
Q Consensus 272 ~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G-~~G-G~i~~~ 334 (334)
++|.++|++||+++|+|++|++|.. ...+ ..+ ++|++++|++|+++ +.| |+++++
T Consensus 144 ~~i~~l~~~~~~~li~D~a~~~~~~---~~~~-~~~----~~d~~~~s~~K~~~~~~g~G~~~~~ 200 (353)
T 2yrr_A 144 EAIGALAKEAGALFFLDAVTTLGML---PFSM-RAM----GVDYAFTGSQKCLSAPPGLAPIAAS 200 (353)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTS---CCCH-HHH----TCSEEECCTTSTTCCCSSCEEEEEC
T ss_pred HHHHHHHHHcCCeEEEEcCcccccc---cccc-ccc----CceEEEecCcccccCCCceEEEEEC
Confidence 9999999999999999999975432 1111 111 35899999999774 455 787653
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6e-17 Score=156.15 Aligned_cols=158 Identities=15% Similarity=0.185 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHH-hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 150 NYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAV-GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al-~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
+...+|++++++++|.+.++++++|++|+..++.++ ..+ ||.|++..+.|.+....++.. |
T Consensus 32 ~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~~--------------gd~Vl~~~~~~~~~~~~~~~~----g 93 (394)
T 1o69_A 32 EFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQ--------------DDIVLASSFTFIASVAPICYL----K 93 (394)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCT--------------TCEEEEESSSCGGGTHHHHHT----T
T ss_pred hHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCC--------------CCEEEECCCccHHHHHHHHHc----C
Confidence 667999999999999999999999999999999987 543 788998999999988888776 8
Q ss_pred cEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCccc
Q 019931 229 VEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV 303 (334)
Q Consensus 229 ~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~ 303 (334)
++++.++. .|+++|++++++.+.++++|++++ ++|...|+++|.++|+++|++||+|++|+.|.. ..|...
T Consensus 94 ~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~-~~~~~~ 169 (394)
T 1o69_A 94 AKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSF-YKNKAL 169 (394)
T ss_dssp CEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCE-ETTEET
T ss_pred CEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccce-eCCccc
Confidence 88888874 388999999875322477887775 689999999999999999999999999997643 222211
Q ss_pred ccccCCCCCccEEEecCcccccC-CccEEee
Q 019931 304 AEQFNCERDVDICVGTLSKAAGC-QGGFIAC 333 (334)
Q Consensus 304 ~~~~~~~~~~Div~~SlsKa~G~-~GG~i~~ 333 (334)
+-..++|+...|.+|.+++ .+|++++
T Consensus 170 ----~~~~~~~~~s~s~~K~l~~~~~G~~~~ 196 (394)
T 1o69_A 170 ----GTFGEFGVYSYNGNKIITTSGGGMLIG 196 (394)
T ss_dssp ----TSSSSEEEEECCTTSSSCCSSCEEEEE
T ss_pred ----ccccCcEEEEEeCCccCCCCCceEEEE
Confidence 1112456665566898864 5688876
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=173.14 Aligned_cols=166 Identities=16% Similarity=0.055 Sum_probs=124.3
Q ss_pred cCchHHHHHHHHHHHhHhCCCcEEEeccHH-HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHH-HHHh
Q 019931 146 CGYTNYHRLLESCLADLKKKEDCLLCPTGF-AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDG-IRIA 223 (334)
Q Consensus 146 ~G~~~~~~~LE~~La~~~g~e~alv~~sG~-~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g-~~ls 223 (334)
.+....+.++|+.+|+++|.+.++++++|+ +||.+++.+++++ ||.|++++++|.++..+ ++++
T Consensus 169 ~~~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~p--------------GD~VLv~~~~H~S~~~~~~~l~ 234 (730)
T 1c4k_A 169 LIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSN--------------GDLVLFDRNNHKSVYNSALAMA 234 (730)
T ss_dssp TTTBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCT--------------TCEEEEETTCCHHHHHHHTTTT
T ss_pred cCChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCC--------------CCEEEEcCCchHHHHHHHHHHC
Confidence 344567899999999999999988887775 8999999998765 89999999999999988 6666
Q ss_pred hhcCCcEEEEeeC----------CCHHHH-----HHHHhcCCCC---c----EEEEEcCCCCCCCCccCHHHHHHHHHHc
Q 019931 224 ERTKMVEVFVYKH----------CDMSHL-----KTLLSCCTMR---K----KVVVTDSLFSMDGDFAPMVELVKLRRKY 281 (334)
Q Consensus 224 ~~~~g~~v~~~~~----------~D~~~L-----e~~l~~~~~~---~----~lVv~e~v~n~~G~~~pL~~L~ela~k~ 281 (334)
|++++.++. .|+++| ++++++..++ + ++|+++++ |++|.+.|+++|+++|++|
T Consensus 235 ----Ga~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~ 309 (730)
T 1c4k_A 235 ----GGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHL 309 (730)
T ss_dssp ----CCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGG
T ss_pred ----CCEEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHc
Confidence 788776542 278888 8888653101 2 66666666 4799999999999999999
Q ss_pred CCEEEEecCccccc-ccCCCcccccccCC-CCCcc----EEEecCcccccC--CccEE
Q 019931 282 GFLLVLDDAHGTFV-CGKNGGGVAEQFNC-ERDVD----ICVGTLSKAAGC--QGGFI 331 (334)
Q Consensus 282 ga~LivDeAh~~Gv-~G~~G~g~~~~~~~-~~~~D----iv~~SlsKa~G~--~GG~i 331 (334)
|++|++|+||+.++ +++.+.|.. .... ..++| +++.|+||++++ .||++
T Consensus 310 g~~livDeAh~~~~~f~~~~~g~~-~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I 366 (730)
T 1c4k_A 310 CDYIEFDSAWVGYEQFIPMMRNSS-PLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQI 366 (730)
T ss_dssp BSEEEEECTTCCGGGSSGGGGGGC-TTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEE
T ss_pred CCeEEEEcccccccccCcccCCcC-cccccccCCCCCCEEEEECCCCCCCCCCCEEEE
Confidence 99999999998653 333222110 1111 12345 999999999976 35666
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=158.37 Aligned_cols=168 Identities=17% Similarity=0.148 Sum_probs=122.6
Q ss_pred HHHHHHHH----HHHhHhCCC----cEEEeccHHHHHHHHHHHHhhhh--hhccCCCccCCCCCeEEEEcCCCchhhHHH
Q 019931 150 NYHRLLES----CLADLKKKE----DCLLCPTGFAANMAVIVAVGNIA--SLLAGDEKSFKDEKIAIFSDALNHASIIDG 219 (334)
Q Consensus 150 ~~~~~LE~----~La~~~g~e----~alv~~sG~~An~~ai~al~~~~--~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g 219 (334)
+...++|+ .+++++|.+ .++++++|++||..++.++.... .+..++- ...++++|+++...|.++..+
T Consensus 131 p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~--~~~~~~~v~~s~~~H~s~~~~ 208 (511)
T 3vp6_A 131 PVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGM--AAVPKLVLFTSEQSHYSIKKA 208 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCG--GGSCCEEEEEETTSCTHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCc--ccCCCeEEEECCCchHHHHHH
Confidence 44455555 556667765 46788999999999998776420 0000000 001367899999999999999
Q ss_pred HHHhhhcCCc---EEEEeeCC-----CHHHHHHHHhcCC---CCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEe
Q 019931 220 IRIAERTKMV---EVFVYKHC-----DMSHLKTLLSCCT---MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLD 288 (334)
Q Consensus 220 ~~ls~~~~g~---~v~~~~~~-----D~~~Le~~l~~~~---~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivD 288 (334)
+++. |. +++.++.+ |+++||++|++.. ..+++|++++++|++|.+.||++|.++|++||+||++|
T Consensus 209 ~~~~----g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD 284 (511)
T 3vp6_A 209 GAAL----GFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVD 284 (511)
T ss_dssp HHHT----TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEE
T ss_pred HHHc----CCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEE
Confidence 9887 55 77777765 9999999997531 12789999999999999999999999999999999999
Q ss_pred cCccccccc-CCCcccccccCCCCCccEEEecCcccccC
Q 019931 289 DAHGTFVCG-KNGGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 289 eAh~~Gv~G-~~G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
+||+.+++. +..+... .++ .++|+++.+++|.|+.
T Consensus 285 ~a~~~~~~~~~~~~~~~--~g~-~~aDsv~~~~hK~l~~ 320 (511)
T 3vp6_A 285 AAWGGGLLMSRKHRHKL--NGI-ERANSVTWNPHKMMGV 320 (511)
T ss_dssp ETTGGGGGGCTTTGGGG--TTG-GGCSEEEECTTSTTCC
T ss_pred ccchhhHhhChhhhhhc--cCC-ccCCEEEECcccccCC
Confidence 999987652 1111111 122 3579999999999975
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=160.20 Aligned_cols=213 Identities=11% Similarity=0.011 Sum_probs=140.6
Q ss_pred eEEEeecCccCC---CCCCHHHHHHHH--HhcCCCCcccccc-CchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHH--
Q 019931 110 RLLLFSGNDYLG---LSSHPTIAKAAA--RHGMGPRGSALIC-GYTNYHRLLESCLADLKKK--EDCLLCPTGFAANM-- 179 (334)
Q Consensus 110 ~~l~f~sn~yLg---l~~~p~v~~a~~--~~g~g~~~sr~~~-G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~-- 179 (334)
..+||+.+.. . +..+|.+++++. +.-. .+.....+ +......+|+++++++++. +.+++++++++|+.
T Consensus 26 ~~i~l~~g~p-~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~ 103 (423)
T 3ez1_A 26 LNLNMQRGQP-ADADFDLSNGLLTVLGAEDVRM-DGLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGL 103 (423)
T ss_dssp CCEESCCCCC-CHHHHHTTGGGGGSCCGGGCEE-TTEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHH
T ss_pred ceEecCCCCC-ChHhCCCcHHHHHHHhhhHHhh-cchhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHH
Confidence 3578877642 3 445667777764 3322 11111122 2233347899999999985 35777788888887
Q ss_pred HHHHHHhh--hhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC----CHHHHHHHHhcCCCCc
Q 019931 180 AVIVAVGN--IASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC----DMSHLKTLLSCCTMRK 253 (334)
Q Consensus 180 ~ai~al~~--~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~----D~~~Le~~l~~~~~~~ 253 (334)
.++.+++. ++ +.+++..++|.|++..+.|......++.. |.+++.++.+ |+++|++++++. +++
T Consensus 104 ~~~~~l~~~~~g-----~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~----g~~~~~v~~~~~g~d~~~l~~~l~~~-~~~ 173 (423)
T 3ez1_A 104 VLTFALLHGVRG-----STGPWLSQTPKMIVTVPGYDRHFLLLQTL----GFELLTVDMQSDGPDVDAVERLAGTD-PSV 173 (423)
T ss_dssp HHHHHHHTCCTT-----CSSCGGGGCCEEEEEESCCHHHHHHHHHH----TCEEEEEEEETTEECHHHHHHHHHSC-TTE
T ss_pred HHHHHHhccCCC-----ccccccCCCCEEEEcCCCcHHHHHHHHHc----CCEEEeccCCCCCCCHHHHHHHHhhC-CCc
Confidence 78887765 41 00000011578888888888888777777 7888887753 899999999632 368
Q ss_pred EEEEE-cCCCCCCCCccCHH---HHHHHH-HHcCCEEEEecCcccccccC-CCcccccccCC-----CCCccEEEecCcc
Q 019931 254 KVVVT-DSLFSMDGDFAPMV---ELVKLR-RKYGFLLVLDDAHGTFVCGK-NGGGVAEQFNC-----ERDVDICVGTLSK 322 (334)
Q Consensus 254 ~lVv~-e~v~n~~G~~~pL~---~L~ela-~k~ga~LivDeAh~~Gv~G~-~G~g~~~~~~~-----~~~~Div~~SlsK 322 (334)
++|++ .+++||+|.+.|.+ +|+++| ++||++||+||+|+...+.. .+......+.+ .++.+|+++||||
T Consensus 174 ~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK 253 (423)
T 3ez1_A 174 KGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSK 253 (423)
T ss_dssp EEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTT
T ss_pred eEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchh
Confidence 88865 58999999999866 788888 89999999999999654443 11111111211 3456799999999
Q ss_pred ccc--CCccEEeeC
Q 019931 323 AAG--CQGGFIACR 334 (334)
Q Consensus 323 a~G--~~GG~i~~~ 334 (334)
+++ ...||++++
T Consensus 254 ~~~~G~r~G~~~~~ 267 (423)
T 3ez1_A 254 ITFAGAGLGFVASS 267 (423)
T ss_dssp TSCSSSSCEEEEEC
T ss_pred hccCCcceEEEEeC
Confidence 742 233888764
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-16 Score=148.78 Aligned_cols=186 Identities=10% Similarity=0.014 Sum_probs=135.2
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhC---C--CcEEEeccHHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKK---K--EDCLLCPTGFAANMAVIV 183 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g---~--e~alv~~sG~~An~~ai~ 183 (334)
.+++||.+|.+ .+..+|.+++++.++-......+ ++.. ...+++++++++++ . +.++++++|++|+..++.
T Consensus 19 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~--y~~~-~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~ 94 (335)
T 1uu1_A 19 RDKTYLALNEN-PFPFPEDLVDEVFRRLNSDALRI--YYDS-PDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMML 94 (335)
T ss_dssp CCSEEESSCCC-SSCCCHHHHHHHHHTCCGGGGGS--CCCS-SCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHH
T ss_pred CcceECCCCCC-CCCCCHHHHHHHHHHhhhhhhhc--CCCC-chHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHH
Confidence 46899999875 45678999998877542111111 1111 25789999999998 3 467888888999998887
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEE
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVT 258 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~ 258 (334)
++ ||.|++. +.|......++.. |.+++.++.+ |+++| +++++|++
T Consensus 95 ~~-----------------gd~Vl~~-p~y~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l--------~~~~~v~l 144 (335)
T 1uu1_A 95 MF-----------------DRSVFFP-PTYSCYRIFAKAV----GAKFLEVPLTKDLRIPEVNV--------GEGDVVFI 144 (335)
T ss_dssp HS-----------------SEEEECS-SSCHHHHHHHHHH----TCEEEECCCCTTSCCCCCCC--------CTTEEEEE
T ss_pred Hh-----------------CCcEEEC-CCcHHHHHHHHHc----CCeEEEeccCCCCCCCHHHc--------CCCCEEEE
Confidence 65 3567778 8888887777666 7888888753 34443 26788888
Q ss_pred cCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 259 DSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 259 e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
.+++||+|.+.|.++|.++++..| ++|+||+|+... + + ......+. .+.+++++||||+||..| ||++++
T Consensus 145 ~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~-~--~-~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~~~ 217 (335)
T 1uu1_A 145 PNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFH-G--E-SYVDFLKK-YENLAVIRTFSKAFSLAAQRVGYVVAS 217 (335)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHH-C--C-CCGGGGGT-CSSEEEEEESTTTTTCGGGCCEEEEEC
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhc-c--h-hHHHHhhh-CCCEEEEecchhhcCCcccCeEEEEeC
Confidence 889999999999999999999999 999999998532 1 1 22222222 235799999999998766 888764
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.1e-17 Score=151.50 Aligned_cols=188 Identities=11% Similarity=0.066 Sum_probs=128.4
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHh-cCCC-CccccccCchHHHHHHHHHHHhHhCCC---cEEEeccHHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARH-GMGP-RGSALICGYTNYHRLLESCLADLKKKE---DCLLCPTGFAANMAVIV 183 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~-g~g~-~~sr~~~G~~~~~~~LE~~La~~~g~e---~alv~~sG~~An~~ai~ 183 (334)
+++++|.... .. .+|.+++++.+. ..+. +.+.......+..+++++++++++|.+ .++++++|++|+..++.
T Consensus 3 ~~~~~~~p~p-~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~ 79 (362)
T 3ffr_A 3 NNKIYFTPGP-SE--LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQ 79 (362)
T ss_dssp CCCEEECSSS-CC--CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHH
T ss_pred CcceeccCCC-cC--CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHH
Confidence 3455665542 22 467888655432 2222 011122233467789999999999863 47778999999999999
Q ss_pred HHhhhhhhccCCCccCCCCCeEEEEcCCCchh-hHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEE
Q 019931 184 AVGNIASLLAGDEKSFKDEKIAIFSDALNHAS-IIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVV 257 (334)
Q Consensus 184 al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s-~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv 257 (334)
++.. + ++|+.....+.. ....+... |++++.++.+ |+++|+ + .+++++|+
T Consensus 80 ~l~~--------------~-~~i~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~~~~~d~~~l~--~---~~~~~~v~ 135 (362)
T 3ffr_A 80 NCVE--------------K-KSFHCVNGSFSKRFYEFAGEL----GREAYKEEAAFGKGFYPADIT--V---PADAEIIC 135 (362)
T ss_dssp HHCS--------------S-EEEEEECSHHHHHHHHHHHHT----TCEEEEEECCTTCCCCGGGCC--C---CTTCCEEE
T ss_pred hccC--------------C-cEEEEcCcHHHHHHHHHHHHh----CCCeEEEecCCCCCCCHHHHh--c---cCCccEEE
Confidence 8764 2 555555444431 22222222 7788777643 778887 3 24789999
Q ss_pred EcCCCCCCCCccCHHHHHHHHHHc-CCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc-CCc-cEEee
Q 019931 258 TDSLFSMDGDFAPMVELVKLRRKY-GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG-CQG-GFIAC 333 (334)
Q Consensus 258 ~e~v~n~~G~~~pL~~L~ela~k~-ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G-~~G-G~i~~ 333 (334)
+++++|++|.+.|+++|.++|++| |+++|+|++|+.+... .++. ++|+++.|++|+|+ +.| |++++
T Consensus 136 ~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~---------~~~~-~~d~~~~s~~K~~~~~~G~g~~~~ 204 (362)
T 3ffr_A 136 LTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPK---------FDWT-KIDSVFFSVQKCFGLPAGLGVWIL 204 (362)
T ss_dssp EESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSC---------CCTT-SCSEEEEETTSTTCCCSCCEEEEE
T ss_pred EEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcc---------cChh-HCcEEEEecccccCCCCceEEEEE
Confidence 999999999999999999999999 9999999999875321 1222 27899999999998 555 66554
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=161.40 Aligned_cols=172 Identities=13% Similarity=-0.006 Sum_probs=123.1
Q ss_pred HHHHHHHHHhHhCC--CcEEEeccHHHHHH--HHHHHHhh--hhhhccCCCccCC-CCCeEEEEcCCCchhhHHHHHHhh
Q 019931 152 HRLLESCLADLKKK--EDCLLCPTGFAANM--AVIVAVGN--IASLLAGDEKSFK-DEKIAIFSDALNHASIIDGIRIAE 224 (334)
Q Consensus 152 ~~~LE~~La~~~g~--e~alv~~sG~~An~--~ai~al~~--~~~~~~~~~~~~~-~~gd~Vl~d~~~H~s~~~g~~ls~ 224 (334)
..+|+++|+++++. +++++++++++++. .++.+++. ++ +..++. .+||.|++..+.|......++..
T Consensus 80 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g-----~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~- 153 (427)
T 3ppl_A 80 IVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNND-----SVQPWSKEETVKWICPVPGYDRHFSITERF- 153 (427)
T ss_dssp CHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTT-----CSSCGGGSSCCEEEEEESCCHHHHHHHHHT-
T ss_pred cHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCc-----ccccccCCCCCEEEEcCCCcHHHHHHHHHc-
Confidence 47789999999886 45777777788883 77777765 31 000000 02788888888888888887777
Q ss_pred hcCCcEEEEeeCC----CHHHHHHHHhcCCCCcEEEEEc-CCCCCCCCccCHH---HHHHHH-HHcCCEEEEecCccccc
Q 019931 225 RTKMVEVFVYKHC----DMSHLKTLLSCCTMRKKVVVTD-SLFSMDGDFAPMV---ELVKLR-RKYGFLLVLDDAHGTFV 295 (334)
Q Consensus 225 ~~~g~~v~~~~~~----D~~~Le~~l~~~~~~~~lVv~e-~v~n~~G~~~pL~---~L~ela-~k~ga~LivDeAh~~Gv 295 (334)
|.+++.++.+ |+++|+++++. +++++|++. +++||+|.+.|.+ +|+++| ++||+++|+||+|+...
T Consensus 154 ---g~~~~~v~~~~~g~d~~~l~~~l~~--~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~ 228 (427)
T 3ppl_A 154 ---GFEMISVPMNEDGPDMDAVEELVKN--PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHT 228 (427)
T ss_dssp ---TCEEEEEEEETTEECHHHHHHHTTS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCB
T ss_pred ---CCEEEEeCCCCCCCCHHHHHHHHhc--CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccc
Confidence 8888887753 89999998853 367888765 8899999999866 888888 99999999999999766
Q ss_pred ccCCCcccccccCC-----CCCccEEEecCcccccC--CccEEeeC
Q 019931 296 CGKNGGGVAEQFNC-----ERDVDICVGTLSKAAGC--QGGFIACR 334 (334)
Q Consensus 296 ~G~~G~g~~~~~~~-----~~~~Div~~SlsKa~G~--~GG~i~~~ 334 (334)
++..+......+.+ ..+.+|+++||||++++ ..||++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~ 274 (427)
T 3ppl_A 229 LTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTS 274 (427)
T ss_dssp SSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECC
T ss_pred cCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcC
Confidence 65443222122221 34567999999998422 23888764
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-16 Score=157.36 Aligned_cols=191 Identities=15% Similarity=-0.047 Sum_probs=134.6
Q ss_pred CCCCHHHHHHHHHhcCC-CCccccccCchHHHHHHHHHHHhHhCCC-------cEEEeccHHHHHHHHHHHHhhhhh--h
Q 019931 122 LSSHPTIAKAAARHGMG-PRGSALICGYTNYHRLLESCLADLKKKE-------DCLLCPTGFAANMAVIVAVGNIAS--L 191 (334)
Q Consensus 122 l~~~p~v~~a~~~~g~g-~~~sr~~~G~~~~~~~LE~~La~~~g~e-------~alv~~sG~~An~~ai~al~~~~~--~ 191 (334)
...+|.+.+++.+.-.. ...+....+...+.+++.+.+++++|.+ ..+++++|++||+.++.++..+.. .
T Consensus 66 ~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~ 145 (502)
T 3hbx_A 66 TWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKR 145 (502)
T ss_dssp CCCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHH
Confidence 34589998887664221 1111111222345556777788899977 346789999999999888765410 0
Q ss_pred ccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEEEEEcCCCCCC
Q 019931 192 LAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKVVVTDSLFSMD 265 (334)
Q Consensus 192 ~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~e~v~n~~ 265 (334)
...|... ..+.|+++...|.++...+++. |++++.++.+ |+++|++++.+ ++++|++..++|++
T Consensus 146 ~~~G~~~---~~~~vi~~~~~h~s~~~~~~~~----G~~~~~v~~~~~~~~~d~~~l~~~i~~---~t~~v~~~~~~n~t 215 (502)
T 3hbx_A 146 KAEGKPV---DKPNIVTGANVQVCWEKFARYF----EVELKEVKLSEGYYVMDPQQAVDMVDE---NTICVAAILGSTLN 215 (502)
T ss_dssp HHTTCCC---SCCEEEEETTCCHHHHHHHHHT----TCEEEEECCBTTBCSCCHHHHHHHCCT---TEEEEEEEBSCTTT
T ss_pred HhcCCCC---CCcEEEEcCCchHHHHHHHHHc----CceeEEEecCCCcCcCCHHHHHHHHhh---CCEEEEEecCCCCC
Confidence 0000000 1237888899999999988887 8888888742 78899988865 68999999999999
Q ss_pred CCccCHHHHHHHHHHc------CCEEEEecCcccccc---cCCCcccccccCCCCCccEEEecCcccccC
Q 019931 266 GDFAPMVELVKLRRKY------GFLLVLDDAHGTFVC---GKNGGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 266 G~~~pL~~L~ela~k~------ga~LivDeAh~~Gv~---G~~G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
|.+.|+++|.++|+++ |++|++|+||+.++. .+.... .+. ..++|+++.|.+|.+++
T Consensus 216 G~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~---~~~-~~~~D~v~~s~hK~l~~ 281 (502)
T 3hbx_A 216 GEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEW---DFR-LPLVKSINVSGHKYGLV 281 (502)
T ss_dssp CCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC---STT-STTEEEEEEETTTTTCC
T ss_pred CcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccccc---ccC-CCCceEEEECcccccCC
Confidence 9999999999999999 999999999986642 222211 122 25789999999999843
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.2e-16 Score=152.48 Aligned_cols=200 Identities=13% Similarity=-0.031 Sum_probs=138.5
Q ss_pred cCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCCCc-------EEEeccHHHHHHHHHHHHhhhhh
Q 019931 119 YLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKKED-------CLLCPTGFAANMAVIVAVGNIAS 190 (334)
Q Consensus 119 yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~-------alv~~sG~~An~~ai~al~~~~~ 190 (334)
|++...+|.+.+++.++ ......+....+...+.+++.+.+++++|.+. ++++++|++||..++.++.....
T Consensus 49 f~~~~~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~ 128 (452)
T 2dgk_A 49 FCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWR 128 (452)
T ss_dssp CSCCCCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eeCCCchHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHH
Confidence 44444678898877653 22222222223444556777788899999652 78889999999999988764100
Q ss_pred --hccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEEEEEcCCC
Q 019931 191 --LLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKVVVTDSLF 262 (334)
Q Consensus 191 --~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~e~v~ 262 (334)
...++. ...++.|++.. .|.++...+++. |++++.++.+ |+++|++++++ ++++|++..+.
T Consensus 129 ~~~~~~G~---~~~~~~vi~~~-~h~~~~~~~~~~----G~~v~~v~~~~~~~~~d~~~l~~~i~~---~t~~v~~~~~~ 197 (452)
T 2dgk_A 129 KRMEAAGK---PTDKPNLVCGP-VQICWHKFARYW----DVELREIPMRPGQLFMDPKRMIEACDE---NTIGVVPTFGV 197 (452)
T ss_dssp HHHHHTTC---CCSCCEEEESS-CCHHHHHHHHHT----TCEEEECCCBTTBCSCCHHHHHHHCCT---TEEEEECBBSC
T ss_pred HHHHhcCC---CCCCcEEEECC-CcHHHHHHHHHc----CceEEEEecCCCCCeECHHHHHHHHhh---CCEEEEEEcCC
Confidence 000000 00124666666 999998888877 8888888753 78999998864 68999999999
Q ss_pred CCCCCccCHHHHHHHHHHc------CCEEEEecCcccccc---cCCCcccccccCCCCCccEEEecCccccc-CC-ccEE
Q 019931 263 SMDGDFAPMVELVKLRRKY------GFLLVLDDAHGTFVC---GKNGGGVAEQFNCERDVDICVGTLSKAAG-CQ-GGFI 331 (334)
Q Consensus 263 n~~G~~~pL~~L~ela~k~------ga~LivDeAh~~Gv~---G~~G~g~~~~~~~~~~~Div~~SlsKa~G-~~-GG~i 331 (334)
|++|.+.|+++|.++|++| |+++++|+||+.++. .+... . .+. .+++|+++.+++|.+. +. .|++
T Consensus 198 n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~-~~~-~~~~d~~~~~~hK~~~~~~~~G~~ 273 (452)
T 2dgk_A 198 TYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIV--W-DFR-LPRVKSISASGHKFGLAPLGCGWV 273 (452)
T ss_dssp TTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC--C-STT-STTEEEEEEETTTTTCCCSSCEEE
T ss_pred cCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccch--h-hcC-CCCCcEEEECcccccCCCCCeEEE
Confidence 9999999999999999996 999999999997643 22111 0 112 3568999999999653 22 3666
Q ss_pred ee
Q 019931 332 AC 333 (334)
Q Consensus 332 ~~ 333 (334)
++
T Consensus 274 ~~ 275 (452)
T 2dgk_A 274 IW 275 (452)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.7e-16 Score=152.64 Aligned_cols=171 Identities=15% Similarity=0.035 Sum_probs=123.4
Q ss_pred hHHHHHHHHHH----HhHhCCC------------cEEEeccHHHHHHHHHHHHhhhhh-hc---cCCC-ccCCCCCeEEE
Q 019931 149 TNYHRLLESCL----ADLKKKE------------DCLLCPTGFAANMAVIVAVGNIAS-LL---AGDE-KSFKDEKIAIF 207 (334)
Q Consensus 149 ~~~~~~LE~~L----a~~~g~e------------~alv~~sG~~An~~ai~al~~~~~-~~---~~~~-~~~~~~gd~Vl 207 (334)
.+...++|+++ ++++|.+ ..+++++|++||+.++.+...... -. .++. .....++++|+
T Consensus 113 ~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~ 192 (481)
T 4e1o_A 113 SPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAY 192 (481)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEE
T ss_pred CcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEE
Confidence 45556666655 5566754 357889999999999987654200 00 0000 00001368999
Q ss_pred EcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCC---CCcEEEEEcCCCCCCCCccCHHHHHHHHH
Q 019931 208 SDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCT---MRKKVVVTDSLFSMDGDFAPMVELVKLRR 279 (334)
Q Consensus 208 ~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~---~~~~lVv~e~v~n~~G~~~pL~~L~ela~ 279 (334)
++...|.++..++++. +.+++.++.+ |+++||++|++.. ..+++|+....++++|.+.|+++|.++|+
T Consensus 193 ~s~~~H~s~~~~~~~~----g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~ 268 (481)
T 4e1o_A 193 ASDQAHSSVEKAGLIS----LVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICA 268 (481)
T ss_dssp EETTSCHHHHHHHHHH----TCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred EcCcchHHHHHHHHhC----CCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHH
Confidence 9999999999999887 8899988864 9999999997531 12677888888899999999999999999
Q ss_pred HcCCEEEEecCcccccc-cCCCcccccccCCCCCccEEEecCcccccC
Q 019931 280 KYGFLLVLDDAHGTFVC-GKNGGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 280 k~ga~LivDeAh~~Gv~-G~~G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
+||++|++|+||+.+.+ ++..++.. .++ ..+|.++.+++|.++.
T Consensus 269 ~~~~~lhvDaA~g~~~~~~~~~~~~~--~gi-~~aDsi~~~~hK~l~~ 313 (481)
T 4e1o_A 269 REGLWLHIDAAYAGTAFLCPEFRGFL--KGI-EYADSFTFNPSKWMMV 313 (481)
T ss_dssp HHTCEEEEECTTGGGGGGSGGGGGGG--TTG-GGCSEEEECHHHHSSC
T ss_pred HcCCeEEeehhhHHHHHhChhhHHHh--cCc-ccCCEEEEChHHhcCC
Confidence 99999999999997743 32222221 132 2468999999999975
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.69 E-value=7e-17 Score=157.46 Aligned_cols=165 Identities=16% Similarity=0.120 Sum_probs=111.9
Q ss_pred HHHHHHHHHhHh--------CCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCe--------------EEE-E
Q 019931 152 HRLLESCLADLK--------KKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKI--------------AIF-S 208 (334)
Q Consensus 152 ~~~LE~~La~~~--------g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd--------------~Vl-~ 208 (334)
..+|++++++++ ..++++++++|++|+..++.+++.+ +| .|+ .
T Consensus 85 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~--------------gd~~~~~~~~~~g~~~~vi~~ 150 (444)
T 3if2_A 85 DSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGA--------------FVNEHSQDKESKSVDKSILLP 150 (444)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEE--------------EECC-------CEEEEEEEES
T ss_pred CHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCC--------------CccccccccccccccceEEEe
Confidence 467777777776 2467899999999999999988765 43 444 4
Q ss_pred cCCCchhhHHHHHH--hhhcCCcEEEEee----------CCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC---HHH
Q 019931 209 DALNHASIIDGIRI--AERTKMVEVFVYK----------HCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP---MVE 273 (334)
Q Consensus 209 d~~~H~s~~~g~~l--s~~~~g~~v~~~~----------~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~ 273 (334)
..+.|......+.. .....+..++.++ ..|+++|++++++..+++++|++++++||+|.+.| +++
T Consensus 151 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~ 230 (444)
T 3if2_A 151 LTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAH 230 (444)
T ss_dssp SSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred CCCCccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHH
Confidence 35555544332110 0011256666655 24899999875432347899999999999999999 888
Q ss_pred HHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 274 LVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 274 L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
|+++|++||++||+||+|+.++-+....+.. ....+.+|+++||||. ++.| ||++++
T Consensus 231 i~~~a~~~~~~li~De~~~~~~~~~~~~~~~---~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~ 290 (444)
T 3if2_A 231 LAEIAKRYDIPLIIDNAYGMPFPNIIYSDAH---LNWDNNTILCFSLSKI-GLPGMRTGIIVAD 290 (444)
T ss_dssp HHHHHHHTTCCEEEECTTCTTTTCCBCSCCC---CCCCTTEEEEEESTTT-TCGGGCCEEEECC
T ss_pred HHHHHHHCCCEEEEECCCCCccccccccccc---ccCCCCEEEEechhhc-cCCCCceEEEEEC
Confidence 9999999999999999998542211111111 1124567999999997 5444 888753
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-15 Score=151.35 Aligned_cols=176 Identities=19% Similarity=0.140 Sum_probs=125.9
Q ss_pred chHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCe------EEEEcCCCchhhHHH
Q 019931 148 YTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKI------AIFSDALNHASIIDG 219 (334)
Q Consensus 148 ~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd------~Vl~d~~~H~s~~~g 219 (334)
...+..++.+.+++++|.+ .++++++|++||..++.++.... ++ . ...+|+ .|++....|.++...
T Consensus 146 ~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~--~~-~---~~~~G~~~~~~~~vl~s~~~h~s~~~~ 219 (515)
T 2jis_A 146 FVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQR--YP-D---CKQRGLRTLPPLALFTSKECHYSIQKG 219 (515)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHH--CT-T---HHHHCGGGSCCEEEEEETTSCTHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHH--hh-H---HhhcCccccCCeEEEECCCccHHHHHH
Confidence 3455566777899999975 57788999999999998764210 00 0 000132 788888899999888
Q ss_pred HHHhhhcCCc-EEEEeeCC-----CHHHHHHHHhcC---CCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecC
Q 019931 220 IRIAERTKMV-EVFVYKHC-----DMSHLKTLLSCC---TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDA 290 (334)
Q Consensus 220 ~~ls~~~~g~-~v~~~~~~-----D~~~Le~~l~~~---~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeA 290 (334)
++.... +. +++.++.+ |+++|++++++. ..++++|+++.++|++|.+.|+++|.++|++||++|++|+|
T Consensus 220 ~~~~g~--g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a 297 (515)
T 2jis_A 220 AAFLGL--GTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAA 297 (515)
T ss_dssp HHHTTS--CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEET
T ss_pred HHHcCC--CCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehh
Confidence 877621 22 67777754 899999999752 12478999999999999999999999999999999999999
Q ss_pred cccccccCCCcccccccCCCCCccEEEecCccccc-CCc-cEEee
Q 019931 291 HGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG-CQG-GFIAC 333 (334)
Q Consensus 291 h~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G-~~G-G~i~~ 333 (334)
|+.+.+....... ...++ .++|+++.+++|.++ +.| |++++
T Consensus 298 ~~~~~~~~~~~~~-~~~g~-~~aD~v~~s~hK~l~~p~g~G~l~~ 340 (515)
T 2jis_A 298 WGGSVLLSQTHRH-LLDGI-QRADSVAWNPHKLLAAGLQCSALLL 340 (515)
T ss_dssp TGGGGGGCTTTGG-GGTTG-GGCSEEEECTTSTTCCCSCCEEEEE
T ss_pred hhhHHHhChhhHh-hcCCC-ccCCEEEECcccccCCCCCeeEEEE
Confidence 9987653111000 01122 257999999999997 444 66654
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-16 Score=161.53 Aligned_cols=167 Identities=14% Similarity=0.055 Sum_probs=124.1
Q ss_pred chHHHHHHHHHHHhHhCCCcEEEeccH-HHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc
Q 019931 148 YTNYHRLLESCLADLKKKEDCLLCPTG-FAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT 226 (334)
Q Consensus 148 ~~~~~~~LE~~La~~~g~e~alv~~sG-~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~ 226 (334)
....+.++++.+++++|.+.++++++| ++||..++.+++++ ||.|++++++|.++..++.++
T Consensus 203 ~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~--------------GD~Vlv~~~~h~s~~~~~~~~--- 265 (755)
T 2vyc_A 203 HTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTD--------------NDVVVVDRNCHKSIEQGLMLT--- 265 (755)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCT--------------TCEEEEESSCCHHHHHHHHHH---
T ss_pred CccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCC--------------CCEEEECCCchHHHHHHHHHc---
Confidence 345678999999999999988877777 57899999998765 899999999999999998887
Q ss_pred CCcEEEEeeCC---------------CHHHHHHHHhcCCC-------CcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCE
Q 019931 227 KMVEVFVYKHC---------------DMSHLKTLLSCCTM-------RKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFL 284 (334)
Q Consensus 227 ~g~~v~~~~~~---------------D~~~Le~~l~~~~~-------~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~ 284 (334)
|++++.++.. |+++|++++++.+. ++++|+++++ |++|.+.|+++|.++|++||++
T Consensus 266 -G~~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~ 343 (755)
T 2vyc_A 266 -GAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDR 343 (755)
T ss_dssp -CCEEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSE
T ss_pred -CCEEEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCE
Confidence 8888776531 89999999975321 1236665565 6899999999999999999999
Q ss_pred EEEecCccccc-ccCCCcccccccC----CCCCccEEEecCcccccCC--ccEEee
Q 019931 285 LVLDDAHGTFV-CGKNGGGVAEQFN----CERDVDICVGTLSKAAGCQ--GGFIAC 333 (334)
Q Consensus 285 LivDeAh~~Gv-~G~~G~g~~~~~~----~~~~~Div~~SlsKa~G~~--GG~i~~ 333 (334)
|++|+||+.++ +++..++.....+ ......|++.|+||++++. ||++.+
T Consensus 344 livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~ 399 (755)
T 2vyc_A 344 LHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHV 399 (755)
T ss_dssp EEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEE
T ss_pred EEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeee
Confidence 99999998653 2321111111011 1111234999999999763 577654
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-15 Score=150.69 Aligned_cols=203 Identities=9% Similarity=-0.056 Sum_probs=136.6
Q ss_pred EeecCccCCCCCC----HHHHH-HHH-HhcCCCCccccccCchHHHHHHHHHH----HhHhCCC-----------cEEEe
Q 019931 113 LFSGNDYLGLSSH----PTIAK-AAA-RHGMGPRGSALICGYTNYHRLLESCL----ADLKKKE-----------DCLLC 171 (334)
Q Consensus 113 ~f~sn~yLgl~~~----p~v~~-a~~-~~g~g~~~sr~~~G~~~~~~~LE~~L----a~~~g~e-----------~alv~ 171 (334)
.+.+..|+|+-.. |.+.. ++. .++.+.. .....+...+||+++ ++++|.+ ..+++
T Consensus 70 ~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~----~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t 145 (475)
T 3k40_A 70 HWHSPKFHAYFPTANSYPAIVADMLSGAIACIGF----TWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQ 145 (475)
T ss_dssp CTTCTTBCCSSCCCCCHHHHHHHHHHHHHCCCSS----SCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEE
T ss_pred CCCCcCceeeCCCCCcHHHHHHHHHHHHhCcccc----CccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEc
Confidence 4566677776532 22322 222 2333221 222346666777665 5667765 46888
Q ss_pred ccHHHHHHHHHHHHhhhhh-hcc-CCCc---cCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC----CHHHH
Q 019931 172 PTGFAANMAVIVAVGNIAS-LLA-GDEK---SFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC----DMSHL 242 (334)
Q Consensus 172 ~sG~~An~~ai~al~~~~~-~~~-~~~~---~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~----D~~~L 242 (334)
++|++||+.++.+...... -+. .+.. ....++++|+++...|.++..++++. |++++.++++ |+++|
T Consensus 146 ~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~----g~~~~~v~~d~~~~d~~~L 221 (475)
T 3k40_A 146 GTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLG----GVKLRSVQSENHRMRGAAL 221 (475)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHH----TCEEEEECCBTTBCCHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHc----CCceEEEECCCCCcCHHHH
Confidence 9999999999987643200 000 0000 00012578999999999999999887 8899998874 99999
Q ss_pred HHHHhcCC---CCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccc-cCCCcccccccCCCCCccEEEe
Q 019931 243 KTLLSCCT---MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVC-GKNGGGVAEQFNCERDVDICVG 318 (334)
Q Consensus 243 e~~l~~~~---~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~-G~~G~g~~~~~~~~~~~Div~~ 318 (334)
+++|++.. ..+++|++....+++|.+.|+++|.++|++||+++++|+||+.+++ .+...+.. .++ ..+|.++.
T Consensus 222 ~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~--~gi-~~~Ds~~~ 298 (475)
T 3k40_A 222 EKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLM--KGI-ESADSFNF 298 (475)
T ss_dssp HHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGG--TTG-GGCSEEEE
T ss_pred HHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHh--cCc-ccCCEEEE
Confidence 99997631 1256777778888899999999999999999999999999997643 22222221 122 24699999
Q ss_pred cCcccccC
Q 019931 319 TLSKAAGC 326 (334)
Q Consensus 319 SlsKa~G~ 326 (334)
+++|.++.
T Consensus 299 ~~hK~l~~ 306 (475)
T 3k40_A 299 NPHKWMLV 306 (475)
T ss_dssp CHHHHSSC
T ss_pred CchhccCC
Confidence 99998865
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.5e-17 Score=153.17 Aligned_cols=187 Identities=10% Similarity=0.076 Sum_probs=128.9
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC-----CCCcccc---ccCchHHHHHHHHHHHhHhCCC---cEEEeccH-HH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM-----GPRGSAL---ICGYTNYHRLLESCLADLKKKE---DCLLCPTG-FA 176 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~-----g~~~sr~---~~G~~~~~~~LE~~La~~~g~e---~alv~~sG-~~ 176 (334)
|+.++|..+.+ ..+|.|++++.++-. |.+.+.. ..+..+.++++++++++++|.+ .+++++++ ++
T Consensus 2 ~~~~~~~~g~~---~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~ 78 (360)
T 1w23_A 2 KQVFNFNAGPS---ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASL 78 (360)
T ss_dssp CCCEECCSSSC---CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH
T ss_pred CceEeecCCCc---CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchH
Confidence 44566666543 568999998876532 1111111 3344557889999999999975 45566666 89
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC------CCHHHHHH-HHhcC
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH------CDMSHLKT-LLSCC 249 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~------~D~~~Le~-~l~~~ 249 (334)
|+..++.++..++ +++|.|+.+...|.+.. .++.. | +++.++. .|+++|++ +++
T Consensus 79 al~~~~~~l~~~~-----------~~g~~vi~~~~~~~~~~-~~~~~----g-~~~~v~~~~~~~~~d~~~l~~~~i~-- 139 (360)
T 1w23_A 79 QFTMLPMNLLTKG-----------TIGNYVLTGSWSEKALK-EAKLL----G-ETHIAASTKANSYQSIPDFSEFQLN-- 139 (360)
T ss_dssp HHHHHHHHHCCTT-----------CEEEEEECSHHHHHHHH-HHHTT----S-EEEEEEECGGGTSCSCCCGGGCCCC--
T ss_pred HHHHHHHHhcCCC-----------CcccEEEecchhHHHHH-HHHHh----C-CeEEeecccccCcCCccchHhhccC--
Confidence 9999998887541 23788888877776532 22222 6 7777653 36777777 653
Q ss_pred CCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc-
Q 019931 250 TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG- 328 (334)
Q Consensus 250 ~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G- 328 (334)
+++++|++++++|++|.+.| +|+++||++||+|++|+.+... .++. ..|++++|+||+||+.|
T Consensus 140 -~~~k~v~~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~~~---------~~~~-~~di~~~s~sK~~~~~G~ 203 (360)
T 1w23_A 140 -ENDAYLHITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILSRP---------LKVN-QFGMIYAGAQKNLGPSGV 203 (360)
T ss_dssp -TTEEEEEEESEETTTTEECS-----SCCCCCSSCEEEECTTTTTSSC---------CCGG-GCSEEEEETTTTTSCTTC
T ss_pred -CCCCEEEEeCCCCCcceecc-----cccccCCceEEEechhhcCCCC---------cCcc-cCCEEEEEcccccCCCCc
Confidence 37899999999999999877 3344899999999999875321 1111 12799999999999877
Q ss_pred cEEee
Q 019931 329 GFIAC 333 (334)
Q Consensus 329 G~i~~ 333 (334)
|++++
T Consensus 204 G~~~~ 208 (360)
T 1w23_A 204 TVVIV 208 (360)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88765
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=153.46 Aligned_cols=208 Identities=13% Similarity=-0.012 Sum_probs=133.4
Q ss_pred EEEeecCccCC---CCCCHHHHHHHHHhc---CC--CCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHH--
Q 019931 111 LLLFSGNDYLG---LSSHPTIAKAAARHG---MG--PRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAAN-- 178 (334)
Q Consensus 111 ~l~f~sn~yLg---l~~~p~v~~a~~~~g---~g--~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An-- 178 (334)
.+||+.++. . +..+|.+++++.+.- .+ ...+....| ..+|+++++++++.+ ++++++++++++
T Consensus 34 ~i~l~~g~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G----~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l 108 (422)
T 3d6k_A 34 SLDLTRGKP-SAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLG----IADIRELWAEALGLPADLVVAQDGSSLNIMF 108 (422)
T ss_dssp CEECCCCSC-CHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSC----CHHHHHHHHHHHTCCGGGEEECSSCHHHHHH
T ss_pred eEeCCCCCC-ChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCC----CHHHHHHHHHHhCCChhHEEEecchHHHHHH
Confidence 689998875 3 445667777654321 11 112222222 477899999998864 566667777776
Q ss_pred HHHHHHHhhhhhhccCCCccCCC-CCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC----CCHHHHHHHHhcCCCCc
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKD-EKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH----CDMSHLKTLLSCCTMRK 253 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~-~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~----~D~~~Le~~l~~~~~~~ 253 (334)
..++.++..+. ..+..+..+ .+|.|++..+.|......++.. |++++.++. .|+++|++++++ .++
T Consensus 109 ~~~~~~l~~~~---~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~----g~~~~~v~~~~~g~d~~~l~~~l~~--~~~ 179 (422)
T 3d6k_A 109 DLISWSYTWGN---NDSSRPWSAEEKVKWLCPVPGYDRHFTITEHF----GFEMINVPMTDEGPDMGVVRELVKD--PQV 179 (422)
T ss_dssp HHHHHHHHHCC---TTCSSCGGGSSCCEEEEEESCCHHHHHHHHHH----TCEEEEEEEETTEECHHHHHHHHTS--TTE
T ss_pred HHHHHHhcCcc---cccccccccCCCCEEEEeCCccHHHHHHHHHc----CCEEEecCCCCCCCCHHHHHHHHhc--CCC
Confidence 45556554320 000000000 1346777777888887777766 788888775 389999998864 257
Q ss_pred EEEE-EcCCCCCCCCccCHH---HHHHHHH-HcCCEEEEecCcccccccCCCcccccc------cCCCCCccEEEecCcc
Q 019931 254 KVVV-TDSLFSMDGDFAPMV---ELVKLRR-KYGFLLVLDDAHGTFVCGKNGGGVAEQ------FNCERDVDICVGTLSK 322 (334)
Q Consensus 254 ~lVv-~e~v~n~~G~~~pL~---~L~ela~-k~ga~LivDeAh~~Gv~G~~G~g~~~~------~~~~~~~Div~~SlsK 322 (334)
++|+ +.+++||+|.+.|.+ +|+++|+ +||+++|+||+|+.+-++..+...... .+ ..+.+|+++||||
T Consensus 180 ~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK 258 (422)
T 3d6k_A 180 KGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAG-NPNRFWFMSSTSK 258 (422)
T ss_dssp EEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTT-CTTCEEEEEESTT
T ss_pred eEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccC-CCCcEEEEcChhh
Confidence 8777 789999999999866 7777777 999999999999853343333221111 11 2345799999999
Q ss_pred cccCCc---cEEeeC
Q 019931 323 AAGCQG---GFIACR 334 (334)
Q Consensus 323 a~G~~G---G~i~~~ 334 (334)
+ ++.| ||++++
T Consensus 259 ~-~~~GlriG~~~~~ 272 (422)
T 3d6k_A 259 I-THAGSGVSFFASS 272 (422)
T ss_dssp T-SCTTSSCEEEECC
T ss_pred h-cCcccceEEEEeC
Confidence 8 4444 888764
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.8e-15 Score=147.75 Aligned_cols=172 Identities=16% Similarity=0.133 Sum_probs=122.0
Q ss_pred HHHHHHHHHhHhCCC----cEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCC-----e-EEEEcCCCchhhHHHHH
Q 019931 152 HRLLESCLADLKKKE----DCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEK-----I-AIFSDALNHASIIDGIR 221 (334)
Q Consensus 152 ~~~LE~~La~~~g~e----~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~g-----d-~Vl~d~~~H~s~~~g~~ 221 (334)
..++.+.+++++|.+ .++++++|++||..++.++.... ++ . ...+| + +|++....|.++...++
T Consensus 134 e~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~--~~-~---~~~~G~~~~~~~~v~~s~~~h~s~~~~~~ 207 (504)
T 2okj_A 134 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKY--FP-E---VKTKGMAAVPKLVLFTSEQSHYSIKKAGA 207 (504)
T ss_dssp HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHH--CT-T---HHHHCGGGSCCEEEEEETTSCTHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHH--hh-H---HhhcCccccCCeEEEECCcchHHHHHHHH
Confidence 344445668888865 46788999999999998875310 00 0 00012 4 78888889999988887
Q ss_pred HhhhcCCc-EEEEeeCC-----CHHHHHHHHhcC---CCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcc
Q 019931 222 IAERTKMV-EVFVYKHC-----DMSHLKTLLSCC---TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHG 292 (334)
Q Consensus 222 ls~~~~g~-~v~~~~~~-----D~~~Le~~l~~~---~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~ 292 (334)
.... +. +++.++.+ |+++|++++++. ..++++|++..++|++|.+.|+++|.++|++||+|+++|+||+
T Consensus 208 ~~g~--g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~ 285 (504)
T 2okj_A 208 ALGF--GTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWG 285 (504)
T ss_dssp HTTS--CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTG
T ss_pred HcCC--CcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhh
Confidence 7621 22 67777764 899999999752 1247899999999999999999999999999999999999999
Q ss_pred cccccCCCcccccccCCCCCccEEEecCcccccC-C-ccEEee
Q 019931 293 TFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC-Q-GGFIAC 333 (334)
Q Consensus 293 ~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~-~-GG~i~~ 333 (334)
.+.+...... ....++ .++|+++.+++|.++. . .|++++
T Consensus 286 ~~~~~~~~~~-~~~~g~-~~~D~i~~~~hK~~~~p~~~g~l~~ 326 (504)
T 2okj_A 286 GGLLMSRKHR-HKLNGI-ERANSVTWNPHKMMGVLLQCSAILV 326 (504)
T ss_dssp GGGGGCTTTG-GGGTTG-GGCSEEEECTTSTTCCCSCCEEEEE
T ss_pred hHHHhCHhhH-hhcCCc-ccCCEEEECchhhcCCCcceEEEEE
Confidence 8765311100 011122 2578999999999974 3 266554
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-15 Score=147.47 Aligned_cols=170 Identities=12% Similarity=0.017 Sum_probs=120.6
Q ss_pred HHHHHHHhHhCCCc-----------EEEeccHHHHHHHHHHHHhhhhhhccCCCccCCC--------CCeEEEEcCCCch
Q 019931 154 LLESCLADLKKKED-----------CLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKD--------EKIAIFSDALNHA 214 (334)
Q Consensus 154 ~LE~~La~~~g~e~-----------alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~--------~gd~Vl~d~~~H~ 214 (334)
++.+.+++++|.+. .+++++|++||..++.++..+. ++. .++..+ ++.+|++....|.
T Consensus 117 ~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~--~~~-~~~~~gd~~~~~~~~~~~v~~s~~~h~ 193 (486)
T 1js3_A 117 VMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKV--VRR-LQAASPGLTQGAVLEKLVAYASDQAHS 193 (486)
T ss_dssp HHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHH--HHH-HHHHSTTCCHHHHHHHEEEEEETTCCH
T ss_pred HHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHH--hhh-hhccCccchhcccCCCEEEEECCCCcH
Confidence 44445567778653 6888999999999998764320 000 000000 0235788889999
Q ss_pred hhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCC---CCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEE
Q 019931 215 SIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCT---MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLV 286 (334)
Q Consensus 215 s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~---~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~Li 286 (334)
++...++.. |.+++.++.+ |+++|++++++.. ..+.+|++..++|++|.+.|+++|.++|++||++|+
T Consensus 194 s~~~~~~~~----G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lh 269 (486)
T 1js3_A 194 SVERAGLIG----GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLH 269 (486)
T ss_dssp HHHHHHHHH----TCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhC----CCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEE
Confidence 999988887 8888888763 8999999997531 012478888889999999999999999999999999
Q ss_pred EecCcccccc-cCCCcccccccCCCCCccEEEecCcccccC-Cc-cEEee
Q 019931 287 LDDAHGTFVC-GKNGGGVAEQFNCERDVDICVGTLSKAAGC-QG-GFIAC 333 (334)
Q Consensus 287 vDeAh~~Gv~-G~~G~g~~~~~~~~~~~Div~~SlsKa~G~-~G-G~i~~ 333 (334)
+|+||+.+.+ .+..+... .++ .++|+++.+++|.+++ .| |++++
T Consensus 270 vD~a~g~~~~~~~~~~~~~--~g~-~~adsi~~~~hK~~~~p~~~G~l~~ 316 (486)
T 1js3_A 270 VDAAYAGSAFICPEFRHLL--NGV-EFADSFNFNPHKWLLVNFDCSAMWV 316 (486)
T ss_dssp EECTTGGGGGGSTTTGGGG--TTG-GGCSEEEECHHHHSSCCSSCEEEEE
T ss_pred EehhhHHHHHHCHHHHHHh--cCc-cccCeeEEchhhhcCCCcceEEEEE
Confidence 9999997754 22222221 232 3578999999999975 33 66654
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=141.94 Aligned_cols=204 Identities=10% Similarity=0.048 Sum_probs=138.2
Q ss_pred eeEEEeecCccCC----CCCCHHHHHHHHHh---cCCCCccccccCchHHHHHHHHHHHhHhCC----Cc--EEEeccHH
Q 019931 109 KRLLLFSGNDYLG----LSSHPTIAKAAARH---GMGPRGSALICGYTNYHRLLESCLADLKKK----ED--CLLCPTGF 175 (334)
Q Consensus 109 ~~~l~f~sn~yLg----l~~~p~v~~a~~~~---g~g~~~sr~~~G~~~~~~~LE~~La~~~g~----e~--alv~~sG~ 175 (334)
...|||+-..|.. +...+.|++|.+ . ..+..+|....|..++.+.+.+.+....+. +. ++++++|+
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~ 107 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGT 107 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHH
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchH
Confidence 4578998776543 335677888755 3 123344555667755555555554333221 23 46778888
Q ss_pred HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhc
Q 019931 176 AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSC 248 (334)
Q Consensus 176 ~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~ 248 (334)
.|+..++.++..- .+ |.|++..+.+......++.. |++++.++. .|+++|++.+++
T Consensus 108 ~al~~~~~~l~~~------------~~-d~Vlv~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 170 (405)
T 3k7y_A 108 GAIFVLLEFLKML------------NV-ETLYVTNPPYINHVNMIESR----GFNLKYINFFDYNLIDINYDLFLNDLRN 170 (405)
T ss_dssp HHHHHHHHHHHTT------------TC-CEEEEESSCCHHHHHHHHTT----TCEEEEECCEETTTTEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc------------CC-CEEEEeCCCCHhHHHHHHHc----CCeEEEEeccccccCCcCHHHHHHHHHh
Confidence 9999988877642 14 77888888888888777777 888888764 178999999875
Q ss_pred CCCCcEEEEEcCC-CCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCc---ccccccCCCCCccEEEecCc
Q 019931 249 CTMRKKVVVTDSL-FSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGG---GVAEQFNCERDVDICVGTLS 321 (334)
Q Consensus 249 ~~~~~~lVv~e~v-~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~---g~~~~~~~~~~~Div~~Sls 321 (334)
.+ ++++|++.++ +||+|.+.+ +++|+++|++|++++|+||+|....++.... .......... .-|++.|||
T Consensus 171 ~~-~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~-~~i~~~S~S 248 (405)
T 3k7y_A 171 IP-NGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNI-AFSVCQSFS 248 (405)
T ss_dssp SC-SSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTC-CEEEEEECT
T ss_pred CC-CCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCC-cEEEEeeCC
Confidence 32 4677777665 799999887 6678899999999999999998654431101 1111111112 348899999
Q ss_pred ccccCCc---cEEe
Q 019931 322 KAAGCQG---GFIA 332 (334)
Q Consensus 322 Ka~G~~G---G~i~ 332 (334)
|+||+.| ||++
T Consensus 249 K~~~l~GlRiG~~~ 262 (405)
T 3k7y_A 249 KNMSLYGERAGALH 262 (405)
T ss_dssp TTSCCTTTTEEEEE
T ss_pred ccCCCccccceEEE
Confidence 9999877 8864
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=149.17 Aligned_cols=166 Identities=11% Similarity=0.073 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHhHhCCCc-EEEeccHH-HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc
Q 019931 149 TNYHRLLESCLADLKKKED-CLLCPTGF-AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT 226 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~-alv~~sG~-~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~ 226 (334)
....+++++.+++++|.+. ++++++|+ ++|..++.++.... +++.|++....|.++...++..
T Consensus 132 ~~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~------------~~~~vi~~~~~h~s~~~~~~~~--- 196 (456)
T 2z67_A 132 YALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKY------------GSNVVIYPYASHKSPIKAVSFV--- 196 (456)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHH------------CCCEEEEECCCCHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhc------------CCCEEEEECCCcHHHHHHHHHc---
Confidence 4566889999999999865 67778888 67877777654310 2566666666999988888776
Q ss_pred CCcEEEEeeC--------CCHHHHHHHH-hcC-CCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccc
Q 019931 227 KMVEVFVYKH--------CDMSHLKTLL-SCC-TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVC 296 (334)
Q Consensus 227 ~g~~v~~~~~--------~D~~~Le~~l-~~~-~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~ 296 (334)
|.+++.++. .|+++|++++ +.. ..++++|++..++|++|.+.|+++|.++|+++|+++++|+||+...+
T Consensus 197 -G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~ 275 (456)
T 2z67_A 197 -GMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNN 275 (456)
T ss_dssp -TCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCH
T ss_pred -CCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHH
Confidence 788777653 3899999999 421 12677888889999999999999999999999999999999986544
Q ss_pred cCCCcccccccCCCCCccEEEecCccccc-CC-ccEEee
Q 019931 297 GKNGGGVAEQFNCERDVDICVGTLSKAAG-CQ-GGFIAC 333 (334)
Q Consensus 297 G~~G~g~~~~~~~~~~~Div~~SlsKa~G-~~-GG~i~~ 333 (334)
|..... .... ..++|+++.|++|.++ +. +|++++
T Consensus 276 g~~~~~-~~~~--~~~~D~~~~s~hK~~~~p~g~G~l~~ 311 (456)
T 2z67_A 276 YYLEKL-KKAF--KYRVDAVVSSSDKNLLTPIGGGLVYS 311 (456)
T ss_dssp HHHHHH-HHHH--TSCCSEEEEEHHHHHCCCSSCEEEEE
T ss_pred HhhHHH-HHhh--CCCCCEEEEcCCCCcCCCCCeEEEEE
Confidence 210000 0011 1157899999999864 44 377765
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=147.42 Aligned_cols=207 Identities=14% Similarity=0.081 Sum_probs=121.1
Q ss_pred eeEEEeecCccCCCCC--CHHHHHHHHHhc-CCC-CccccccCchHHHHHHHHHHHhHh----C----CCcEEEeccHHH
Q 019931 109 KRLLLFSGNDYLGLSS--HPTIAKAAARHG-MGP-RGSALICGYTNYHRLLESCLADLK----K----KEDCLLCPTGFA 176 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~--~p~v~~a~~~~g-~g~-~~sr~~~G~~~~~~~LE~~La~~~----g----~e~alv~~sG~~ 176 (334)
..++||+.++. .... .+.+++++++.. .+. ..+.+.++......+|++++++++ | .++++++++|++
T Consensus 31 ~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~ 109 (417)
T 3g7q_A 31 PGAIMLGGGNP-AHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQS 109 (417)
T ss_dssp -CCEECSCCCC-CCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHH
T ss_pred CCceEecCcCC-CCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHH
Confidence 56789888753 2211 133444544431 110 000011222222356777777765 2 357899999999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEc-CCCchhhHHHHHHh--hhcCCcEEEEeeC------CCHHHHHHHHh
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSD-ALNHASIIDGIRIA--ERTKMVEVFVYKH------CDMSHLKTLLS 247 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d-~~~H~s~~~g~~ls--~~~~g~~v~~~~~------~D~~~Le~~l~ 247 (334)
|+..++.+++.+++ .+..+.|++. .+.|......+... ....+..+..++. .|+++|+ +.
T Consensus 110 al~~~~~~l~~~gd---------~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~ 178 (417)
T 3g7q_A 110 AFFYLFNLFAGRRA---------DGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IG 178 (417)
T ss_dssp HHHHHHHHHSBC-------------CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CC
T ss_pred HHHHHHHHHcCCCc---------cCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--cc
Confidence 99999999876510 0001156553 55555544333211 0111334444432 2788877 33
Q ss_pred cCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc
Q 019931 248 CCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA 324 (334)
Q Consensus 248 ~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~ 324 (334)
+++++|++++++||+|.+.| +++|+++|++||+++|+||+|+...-+....+. .....+.+|+++|||| +
T Consensus 179 ---~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~---~~~~~~~~i~~~s~sK-~ 251 (417)
T 3g7q_A 179 ---EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEA---RPLWNPNIILCMSLSK-L 251 (417)
T ss_dssp ---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCC---CCCCCTTEEEEEESGG-G
T ss_pred ---cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccccccccc---ccCCCCCEEEEEechh-c
Confidence 37899999999999999988 888999999999999999999853211111111 1112355799999999 6
Q ss_pred cCCc---cEEeeC
Q 019931 325 GCQG---GFIACR 334 (334)
Q Consensus 325 G~~G---G~i~~~ 334 (334)
++.| ||++++
T Consensus 252 ~~~G~r~G~~~~~ 264 (417)
T 3g7q_A 252 GLPGSRCGIIIAN 264 (417)
T ss_dssp TCTTSCCEEEECC
T ss_pred cCCCcceEEEEeC
Confidence 6655 888763
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=150.12 Aligned_cols=155 Identities=17% Similarity=0.178 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK 227 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~ 227 (334)
.....++++.+++ +|.++.+++ ++|++||..++.+++++ ||.|++++..|.++..++.+.
T Consensus 56 ~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~--------------gd~Vlv~~~~h~s~~~~~~~~---- 116 (446)
T 2x3l_A 56 EEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQK--------------KGDILMARNVHKSVLHALDIS---- 116 (446)
T ss_dssp SSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTS--------------SSCEEECTTCCHHHHHHHHHH----
T ss_pred chHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCC--------------CCEEEEecCccHHHHHHHHHc----
Confidence 3456899999999 998766555 55578999999987654 788999999999999998887
Q ss_pred CcEEEEeeC--C---------CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccc
Q 019931 228 MVEVFVYKH--C---------DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVC 296 (334)
Q Consensus 228 g~~v~~~~~--~---------D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~ 296 (334)
|++++.++. + |+++| +. +++++|++++ .|++|.+.|+++|+++|++||++||+||||+. .+
T Consensus 117 G~~~~~v~~~~~~~~~~~~~~d~~~l---~~---~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~-~~ 188 (446)
T 2x3l_A 117 QQEGHFIETHQSPLTNHYNKVNLSRL---NN---DGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA-HF 188 (446)
T ss_dssp TCCEEECEEEECTTTSSEEEEEC-------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT-TT
T ss_pred CCeEEEEeCeeccccCcCCCCCHHHH---cC---CCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh-hh
Confidence 777777665 3 33444 22 3678877777 55699999999999999999999999999986 23
Q ss_pred cCCCcccccccCCCCCccEEEecCccccc-CC-ccEEee
Q 019931 297 GKNGGGVAEQFNCERDVDICVGTLSKAAG-CQ-GGFIAC 333 (334)
Q Consensus 297 G~~G~g~~~~~~~~~~~Div~~SlsKa~G-~~-GG~i~~ 333 (334)
...+. ..... ..++|+++.|+||+++ .. +|++.+
T Consensus 189 ~f~~~-~~~~~--~~g~Di~~~S~~K~l~~~~g~g~l~~ 224 (446)
T 2x3l_A 189 GLQGF-PDSTL--NYQADYVVQSFHKTLPALTMGSVLYI 224 (446)
T ss_dssp TSTTS-CCCGG--GGTCSEEEECHHHHSSSCTTCEEEEE
T ss_pred ccCCC-CCChH--HcCCCEEEECCccccccccccEEEEE
Confidence 22222 11111 1236899999999764 33 377764
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=142.47 Aligned_cols=172 Identities=10% Similarity=0.027 Sum_probs=115.0
Q ss_pred CCCCHHHHHHHHHhcC---CCCcccc-----ccCchHHHHHHHHHHHhHhCCC---cEEEe-ccHHHHHHHHHHHHhhhh
Q 019931 122 LSSHPTIAKAAARHGM---GPRGSAL-----ICGYTNYHRLLESCLADLKKKE---DCLLC-PTGFAANMAVIVAVGNIA 189 (334)
Q Consensus 122 l~~~p~v~~a~~~~g~---g~~~sr~-----~~G~~~~~~~LE~~La~~~g~e---~alv~-~sG~~An~~ai~al~~~~ 189 (334)
...+|.|++++.++-. +.+++++ ..+....++++++++++++|.+ +++++ ++|++|+..++.+++++
T Consensus 13 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~~- 91 (362)
T 2c0r_A 13 AALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKE- 91 (362)
T ss_dssp CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCT-
T ss_pred CCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCCC-
Confidence 3468999998876432 2222211 1223456789999999999976 45555 78899999999988764
Q ss_pred hhccCCCccCCCCCeEEEEcCCCchhh--HHHHHHhhhcCCcEEEEeeC------C---CHHHHHHHHhcCCCCcEEEEE
Q 019931 190 SLLAGDEKSFKDEKIAIFSDALNHASI--IDGIRIAERTKMVEVFVYKH------C---DMSHLKTLLSCCTMRKKVVVT 258 (334)
Q Consensus 190 ~~~~~~~~~~~~~gd~Vl~d~~~H~s~--~~g~~ls~~~~g~~v~~~~~------~---D~~~Le~~l~~~~~~~~lVv~ 258 (334)
||.|++....|.+. ...++.. | +++.++. . |.++++ + .+++++|++
T Consensus 92 -------------gd~vl~~~~~~~~~~~~~~~~~~----g-~~~~v~~~~~~~~~~~~~~~~~~--i---~~~t~~v~~ 148 (362)
T 2c0r_A 92 -------------GQTANYVMTGSWASKALKEAKLI----G-DTHVAASSEASNYMTLPKLQEIQ--L---QDNAAYLHL 148 (362)
T ss_dssp -------------TCEEEEEECSHHHHHHHHHHHHH----S-CEEEEEECGGGTTCSCCCGGGCC--C---CTTEEEEEE
T ss_pred -------------CCeEEEEecCcHhHHHHHHHHHh----C-CeEEEecccccccccCCCHHHcc--c---CCCcCEEEE
Confidence 66665443333332 2333333 5 5555542 2 333332 3 347899999
Q ss_pred cCCCCCCCCc-cCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc-cEEee
Q 019931 259 DSLFSMDGDF-APMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG-GFIAC 333 (334)
Q Consensus 259 e~v~n~~G~~-~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G-G~i~~ 333 (334)
.++.|++|.+ .|+++| +|+++++|++|+.|.. ..++. +.|+++.|+||.+|+.| ||+++
T Consensus 149 ~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~---------~~~~~-~~d~~~~s~~K~~g~~G~G~l~~ 209 (362)
T 2c0r_A 149 TSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSR---------PFDLN-QFGLVYAGAQKNLGPSGVTVVIV 209 (362)
T ss_dssp ESEETTTTEECSSCCCC------TTSCEEEECTTTTTSS---------CCCGG-GCSEEEEETTTTTCCSSCEEEEE
T ss_pred eCCcCccceeccccccc------CCCEEEEEChhhccCC---------ccchh-HCcEEEEeccccccCcCcEEEEE
Confidence 9999999985 778776 8999999999987632 11222 23899999999999888 88875
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=139.55 Aligned_cols=157 Identities=14% Similarity=0.055 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHhHhCCCcEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 150 NYHRLLESCLADLKKKEDCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~e~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
+..+++++++++++|.+..++| +||++|+.+++..+ .+ ||.|++....|.+..........+.+
T Consensus 35 ~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~~-~~--------------gd~vi~~~~~~~~~~~~~~~~~~g~~ 99 (379)
T 3ke3_A 35 EVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQL-TI--------------DEDCLIIRNGWFSYRWTQILEKGKFA 99 (379)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHHH-CT--------------TCEEEEEECSHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHhC-CC--------------CCeEEEEeCCchhHHHHHHHHHhCCC
Confidence 5678899999999998766655 79999999987543 33 56565544444443211111111112
Q ss_pred cEEEEee--------------CCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCc
Q 019931 229 VEVFVYK--------------HCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAH 291 (334)
Q Consensus 229 ~~v~~~~--------------~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh 291 (334)
.+++.++ ..|+++|++++++. ++++|++.++.|++|.+.| +++|.++|++||++||+|++|
T Consensus 100 ~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~ 177 (379)
T 3ke3_A 100 KSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKED--KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIA 177 (379)
T ss_dssp SEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHH--TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CceEEEeccccccccccCCCCCCCHHHHHHHHhhc--CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence 3555443 36899999999642 5788888899999999999 999999999999999999999
Q ss_pred ccccccCCCcccccccCCC-CCccEEEecCcccccC-Cc-cEEee
Q 019931 292 GTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGC-QG-GFIAC 333 (334)
Q Consensus 292 ~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~-~G-G~i~~ 333 (334)
+ |.. .+ .+. .++|++++|++|++++ .| |++++
T Consensus 178 ~-g~~-----~~----~~~~~~~d~~~~s~~K~l~~~~g~g~~~~ 212 (379)
T 3ke3_A 178 S-GCV-----WL----DMKELGIDVLISAPQKGWSSTPCAGLVML 212 (379)
T ss_dssp C-TTC-----CC----CHHHHTCSEEEECTTTTTCSCCCEEEEEE
T ss_pred c-CCc-----cc----cccccCCCEEEecchhhcCCCCceEEEEE
Confidence 7 521 11 111 2578999999999965 34 67665
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-15 Score=150.75 Aligned_cols=201 Identities=13% Similarity=0.073 Sum_probs=132.2
Q ss_pred EEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHH-HhHhC-------CCcEEEeccHHHHHHHHH
Q 019931 111 LLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCL-ADLKK-------KEDCLLCPTGFAANMAVI 182 (334)
Q Consensus 111 ~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~L-a~~~g-------~e~alv~~sG~~An~~ai 182 (334)
.++|+.+++ ++ .+|.+++++.+...+ ..+....|..++.+++.+.+ .+..+ .+++++++++++|+..++
T Consensus 106 ~i~l~~g~~-~~-~~~~~~~al~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~ 182 (546)
T 2zy4_A 106 SLSYVRDQL-GL-DPAAFLHEMVDGILG-CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIF 182 (546)
T ss_dssp HHHHHHHTS-CC-CHHHHHHHHHHHHHT-CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHH
T ss_pred hhecccCCC-CC-CChHHHHHHHHhhhc-CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHH
Confidence 678877764 66 456666655432222 23444456656655544433 22221 135677778888988888
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCCCCcEE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCTMRKKV 255 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~~~~~l 255 (334)
.++.... ..++||.|++..+.|..+...+.+.. .+.+++.++. .|+++|++++. +++++
T Consensus 183 ~~l~~~~---------l~~~Gd~Vlv~~P~y~~~~~~~~~~~--~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~ 248 (546)
T 2zy4_A 183 ESLKLNG---------LLKAGDKVAIGMPVFTPYIEIPELAQ--YALEEVAINADPSLNWQYPDSELDKLKD---PAIKI 248 (546)
T ss_dssp HHHHHTT---------SSCTTCEEEEEESCCHHHHHHHHSTT--SCCEEEEEECBGGGTTBCCHHHHGGGGS---TTEEE
T ss_pred HHhhhhh---------cCCCCCEEEEeCCCCccHHHHHHHcC--CCcEEEEEecCcccCCCCCHHHHHHhhC---CCCeE
Confidence 8752110 01237888888888888777655541 2577777764 36778877653 36888
Q ss_pred EEEcCCCCCCCCccC---HHHHHHHH--HHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc--
Q 019931 256 VVTDSLFSMDGDFAP---MVELVKLR--RKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG-- 328 (334)
Q Consensus 256 Vv~e~v~n~~G~~~p---L~~L~ela--~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G-- 328 (334)
|++++++||+|.+.+ +++|+++| +++|++||+||+|+....+ ...+.. ..++.+|++.||||++|..|
T Consensus 249 v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~--~~s~~~---~~~~~~i~~~S~SK~~g~~GlR 323 (546)
T 2zy4_A 249 FFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD--FQSLFA---ICPENTLLVYSFSKYFGATGWR 323 (546)
T ss_dssp EEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT--CCCHHH---HCGGGEEEEEESTTTTTCGGGC
T ss_pred EEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc--CcCHHH---hCCCCEEEEEeCccccCCCCcc
Confidence 888899999999887 56688888 7899999999999964332 222222 12345799999999999877
Q ss_pred -cEEee
Q 019931 329 -GFIAC 333 (334)
Q Consensus 329 -G~i~~ 333 (334)
||+++
T Consensus 324 iG~~~~ 329 (546)
T 2zy4_A 324 LGVVAA 329 (546)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 99876
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-15 Score=145.03 Aligned_cols=188 Identities=13% Similarity=0.013 Sum_probs=122.0
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhc-----CCCCccccccCc-hHHHHHHHHHHHhHhC-------C-CcEEEecc
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHG-----MGPRGSALICGY-TNYHRLLESCLADLKK-------K-EDCLLCPT 173 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g-----~g~~~sr~~~G~-~~~~~~LE~~La~~~g-------~-e~alv~~s 173 (334)
++.++||+..+. .+..++.+++++.+.. .+...+....|. ...+.+|++++|++++ . ++++++++
T Consensus 21 ~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~~g~~~~~~~~i~~t~G 99 (391)
T 3bwn_A 21 SDFVVNLDHGDP-TAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTG 99 (391)
T ss_dssp TTSCEECSSCCC-GGGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHHHCSBCCSSSEEEEEEH
T ss_pred CCCeeEcCCCCC-CCCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHHhcCCCCCCCCeEEEeCC
Confidence 366788877652 3333344444442211 122233334443 2223678888888876 3 35677777
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCccCCCCCe----EEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcC
Q 019931 174 GFAANMAVIVAVGNIASLLAGDEKSFKDEKI----AIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCC 249 (334)
Q Consensus 174 G~~An~~ai~al~~~~~~~~~~~~~~~~~gd----~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~ 249 (334)
+++|+..++.+++.+ || .|++..+.|..+...++.. |++++.++.+ .+.++ .
T Consensus 100 ~~~al~~~~~~l~~~--------------Gd~~~~~Vlv~~P~y~~~~~~~~~~----g~~~~~~~~d-~~~l~----~- 155 (391)
T 3bwn_A 100 STQLCQAAVHALSSL--------------ARSQPVSVVAAAPFYSTYVEETTYV----RSGMYKWEGD-AWGFD----K- 155 (391)
T ss_dssp HHHHHHHHHHHHHHT--------------SSSSSEEEEECSSCCTHHHHHHHTT----CBTTEEEEEE-STTCC----C-
T ss_pred hHHHHHHHHHHhcCC--------------CCCCcceEEEcCCCchhHHHHHHHc----CCeEEEecCC-HHHcC----C-
Confidence 889999999998875 67 8999999999888877766 6766666642 23332 1
Q ss_pred CCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcC--CEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCC
Q 019931 250 TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYG--FLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQ 327 (334)
Q Consensus 250 ~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~g--a~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~ 327 (334)
+++++|++.+++||+|.+.+ +|++ ++++ +++|+||+|..+ . ...+ ....+.+|+++||||+||+.
T Consensus 156 -~~~k~v~l~~p~NPtG~~~~--~l~~--~~~~~~~~ii~De~y~~~---~-~~~l----~~~~~~~i~~~S~SK~~g~~ 222 (391)
T 3bwn_A 156 -KGPYIELVTSPNNPDGTIRE--TVVN--RPDDDEAKVIHDFAYYWP---H-YTPI----TRRQDHDIMLFTFSKITGHA 222 (391)
T ss_dssp -CSCEEEEEESSCTTTCCCCC--CCC-------CCCEEEEECTTCST---T-TSCC----CCCBCCSEEEEEHHHHHSCG
T ss_pred -CCCEEEEECCCCCCCchhHH--HHHH--HhhcCCCEEEEeCCCCCC---C-CCcc----ccCCCCeEEEEechhhcCCC
Confidence 36889989999999999876 4544 2255 999999999731 1 1111 11234579999999999988
Q ss_pred c---cEEee
Q 019931 328 G---GFIAC 333 (334)
Q Consensus 328 G---G~i~~ 333 (334)
| ||+++
T Consensus 223 GlRiG~~~~ 231 (391)
T 3bwn_A 223 GSRIGWALV 231 (391)
T ss_dssp GGCEEEEEE
T ss_pred ccceEEEEe
Confidence 8 99875
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=135.38 Aligned_cols=160 Identities=15% Similarity=0.132 Sum_probs=112.4
Q ss_pred cccCchHHHHHHHHHHHhHhCCCcE--EEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHH
Q 019931 144 LICGYTNYHRLLESCLADLKKKEDC--LLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIR 221 (334)
Q Consensus 144 ~~~G~~~~~~~LE~~La~~~g~e~a--lv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ 221 (334)
...|..+...++++.+++++|.+.. ++++++++++.+++.++.-. ++|.|+++...|.++...++
T Consensus 102 ~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~-------------~gd~Viv~~~~h~s~~~~~~ 168 (438)
T 1wyu_A 102 VSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRET-------------GRMGVLVSQGVHPEYRAVLR 168 (438)
T ss_dssp GCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHH-------------TCCEEEEETTSCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcC-------------CCCEEEEcCccCHhHHHHHH
Confidence 4566678889999999999998754 56677775555555443211 37889999999999887775
Q ss_pred HhhhcCCcEEEEeeCC----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecC-cccccc
Q 019931 222 IAERTKMVEVFVYKHC----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDA-HGTFVC 296 (334)
Q Consensus 222 ls~~~~g~~v~~~~~~----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeA-h~~Gv~ 296 (334)
......|++++.++.. |+++ +. +++++|+++++ |++|.+.|+++|.++|+++|+++++|.. ++.|.+
T Consensus 169 ~~a~~~G~~v~~v~~~~~~~d~~~----i~---~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~ 240 (438)
T 1wyu_A 169 AYLEAVGAKLLTLPLEGGRTPLPE----VG---EEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVL 240 (438)
T ss_dssp HHHHHTTCEEEEECCBTTBCCCCC----CC---TTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTB
T ss_pred HHHHHCCCEEEEEcCcCCccCHHH----hC---CCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCc
Confidence 4212238888888742 3333 33 37899998888 9999999999999999999999998843 655543
Q ss_pred cCCCcccccccCCCCCccEEEecCccccc-------CCccEEeeC
Q 019931 297 GKNGGGVAEQFNCERDVDICVGTLSKAAG-------CQGGFIACR 334 (334)
Q Consensus 297 G~~G~g~~~~~~~~~~~Div~~SlsKa~G-------~~GG~i~~~ 334 (334)
... .. .++|++++| +|.|| ..+||++++
T Consensus 241 ~~~-----~~----~g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~ 275 (438)
T 1wyu_A 241 KPP-----GA----YGADIAVGD-GQSLGLPMGFGGPHFGFLATK 275 (438)
T ss_dssp CCH-----HH----HTCSEEEEE-CTTTTCCCGGGCSCCEEEEEC
T ss_pred CCC-----cc----CCCCEEEEC-CcccCCCccCCCCCeeEEEEc
Confidence 211 11 246899988 67543 223777653
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.2e-12 Score=123.74 Aligned_cols=207 Identities=13% Similarity=0.085 Sum_probs=132.6
Q ss_pred eeEEEeecCccCCCC----CCHHHHHHHHHhc-CC-CCccccccCchHHHHHHHHHHHhHhCC----Cc--EEEeccHHH
Q 019931 109 KRLLLFSGNDYLGLS----SHPTIAKAAARHG-MG-PRGSALICGYTNYHRLLESCLADLKKK----ED--CLLCPTGFA 176 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~----~~p~v~~a~~~~g-~g-~~~sr~~~G~~~~~~~LE~~La~~~g~----e~--alv~~sG~~ 176 (334)
+.-||++-.-|..=. .-|.|++|.++.- .+ ...|....|..++.+.+.+.+ +|. +. .+-+.+|+.
T Consensus 44 ~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~---~g~~~~~~~~~~~qt~ggtg 120 (420)
T 4h51_A 44 GPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKII---YGNTVELENLVAVQTLSGTG 120 (420)
T ss_dssp SSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHH---HC---CGGGEEEEEEEHHHH
T ss_pred CCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHh---cCCCccccccceeeecCchH
Confidence 335787766554322 2367888765432 22 234667778755544443332 231 12 344678888
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcE-EEEeeC-------CCHHHHHHHHhc
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVE-VFVYKH-------CDMSHLKTLLSC 248 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~-v~~~~~-------~D~~~Le~~l~~ 248 (334)
|+..++..+... ..++||.|++..+.+.+....++.. |.+ +..|+. .|.+.+.+.++.
T Consensus 121 a~~~a~~~l~~~----------~~~pgd~V~ip~P~w~~y~~i~~~a----G~~~V~~~~~~~~~~~~~d~~~~~~~l~~ 186 (420)
T 4h51_A 121 AVSLGAKLLTRV----------FDAETTPIYLSDPTWPNHYGVVKAA----GWKNICTYAYYDPKTVSLNFEGMKKDILA 186 (420)
T ss_dssp HHHHHHHHHTTT----------SCTTTSCEEEEESCCTHHHHHHHHT----TCCCEEEEECEEGGGTEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----------cCCCCCEEEEecCCchhHHHHHHHc----CCeEEEeeccccccccCCCHHHHHHHHhc
Confidence 888877766542 1124777777777777777777776 554 444432 277888888876
Q ss_pred CCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCccc-c-cc-cCCCCCccEEEecCcc
Q 019931 249 CTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-A-EQ-FNCERDVDICVGTLSK 322 (334)
Q Consensus 249 ~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~-~~-~~~~~~~Div~~SlsK 322 (334)
.++++++++..+++||+|...+ +++|.++|++++++++.|++|....+|..-... . .. ...... -|++.||||
T Consensus 187 ~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~s~SK 265 (420)
T 4h51_A 187 APDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIE-VLLAQSFSK 265 (420)
T ss_dssp SCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC-CEEEEECTT
T ss_pred cCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCce-EEEEecccc
Confidence 6667889999999999998876 778999999999999999999864443211100 0 00 111122 388899999
Q ss_pred cccCCc---cEEee
Q 019931 323 AAGCQG---GFIAC 333 (334)
Q Consensus 323 a~G~~G---G~i~~ 333 (334)
+|++.| |++++
T Consensus 266 ~~~~~G~RvG~~~~ 279 (420)
T 4h51_A 266 NMGLYSERAGTLSL 279 (420)
T ss_dssp TSCCGGGCEEEEEE
T ss_pred ccccccCceEEEEe
Confidence 999877 77654
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-13 Score=135.59 Aligned_cols=186 Identities=11% Similarity=-0.004 Sum_probs=127.0
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhc--CCCC--cccccc-CchHHHHHHHHHHHhHhC--------CCcEEEeccHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHG--MGPR--GSALIC-GYTNYHRLLESCLADLKK--------KEDCLLCPTGF 175 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g--~g~~--~sr~~~-G~~~~~~~LE~~La~~~g--------~e~alv~~sG~ 175 (334)
...++|..++. .+..++.+++++.+.- .+.. ++.... | .....+|+++++++++ .++++++++++
T Consensus 56 ~~~i~l~~g~~-~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G-~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~ 133 (427)
T 2hox_A 56 GCSADVASGDG-LFLEEYWKQHKEASAVLVSPWHRMSYFFNPVS-NFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVT 133 (427)
T ss_dssp TCCEECCSCCC-GGGHHHHTTSHHHHCEEECTTTTCSSSCSSCC-TTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHH
T ss_pred CceEEecCcCC-CCCCCHHHHHhHHhhhhcCCcccccCCCCCCC-ccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHH
Confidence 45678887764 3444566666766532 2221 122222 4 1124678888888764 24678888889
Q ss_pred HHHHHHHHHH--------hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHh
Q 019931 176 AANMAVIVAV--------GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLS 247 (334)
Q Consensus 176 ~An~~ai~al--------~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~ 247 (334)
+|+..++.++ +. +||.|+++.+.|..+...++.. +++++.+. .|+++|+++++
T Consensus 134 ~al~~~~~~l~~~~~~~~~~--------------~Gd~Vlv~~P~y~~~~~~~~~~----g~~~~~~~-~d~~~l~~~~~ 194 (427)
T 2hox_A 134 QLIHGLVISLSPNMTATPDA--------------PESKVVAHAPFYPVFREQTKYF----DKKGYVWA-GNAANYVNVSN 194 (427)
T ss_dssp HHHHHHHHHHSCCTTTCTTS--------------CCEEEEECSSCCHHHHHHHHHS----CBTTEEEE-EEGGGGTTCSC
T ss_pred HHHHHHHHHHhhccccccCC--------------CCCEEEEeCCCcccHHHHHHHc----CCeeeeec-CCHHHHHHhhc
Confidence 9999999988 54 3899999999998888887766 66666554 47788887665
Q ss_pred cCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCC
Q 019931 248 CCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQ 327 (334)
Q Consensus 248 ~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~ 327 (334)
+ ++++|++.+++||+|.+.+ + + ++ ++..+.|+++-. + ...+. .+..+.+|+++||||.+|..
T Consensus 195 ~---~~k~v~l~~p~NPtG~~~~-~-~---l~--~~~~i~d~~~~~----~-~~s~~---~~~~~~~i~~~S~SK~~g~~ 256 (427)
T 2hox_A 195 P---EQYIEMVTSPNNPEGLLRH-A-V---IK--GCKSIYDMVYYW----P-HYTPI---KYKADEDILLFTMSKFTGHS 256 (427)
T ss_dssp G---GGEEEEEESSCTTTCCCCC-C-S---ST--TCEEEEECTTCS----T-TTSCC---CSCBCCSEEEEEHHHHTSCG
T ss_pred C---CceEEEEcCCCCCcccccH-H-H---Hc--CCCEEEeecccC----C-CCCcc---ccCCCceEEEEeChhcCCCC
Confidence 3 6788888899999999988 4 2 23 567888887631 1 11111 12245689999999999977
Q ss_pred c---cEEee
Q 019931 328 G---GFIAC 333 (334)
Q Consensus 328 G---G~i~~ 333 (334)
| ||+++
T Consensus 257 G~RiG~~~~ 265 (427)
T 2hox_A 257 GSRFGWALI 265 (427)
T ss_dssp GGCCEEEEE
T ss_pred CceEEEEEE
Confidence 7 99876
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.3e-14 Score=134.01 Aligned_cols=184 Identities=11% Similarity=-0.028 Sum_probs=116.1
Q ss_pred EEEeecCccCCCCCCHHHHHHHHHhcCCCCc-cccccCchHHHHHHHHHHHhHhCCC---cEEE-eccHHHHHHHHHHHH
Q 019931 111 LLLFSGNDYLGLSSHPTIAKAAARHGMGPRG-SALICGYTNYHRLLESCLADLKKKE---DCLL-CPTGFAANMAVIVAV 185 (334)
Q Consensus 111 ~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~-sr~~~G~~~~~~~LE~~La~~~g~e---~alv-~~sG~~An~~ai~al 185 (334)
.++|..+.+ ..+|.|++++.+++....+ +.......+..+++++++++++|.+ .+++ +++|++|+..++.++
T Consensus 41 ~~~~~~~~~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l 117 (398)
T 2fyf_A 41 DGRFGSGPS---KVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGL 117 (398)
T ss_dssp SCBCCSSSC---CCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHT
T ss_pred CccccCCCC---CCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHh
Confidence 345554432 3578999988775322111 1111222346789999999999975 4566 789999999999987
Q ss_pred hhhhhhccCCCccCCCCC-eEEEEcCCCchhhHH-HHHHhhhcCCcEEEEeeCCC--HHHHHHHHhcCCCCcEEEEEcCC
Q 019931 186 GNIASLLAGDEKSFKDEK-IAIFSDALNHASIID-GIRIAERTKMVEVFVYKHCD--MSHLKTLLSCCTMRKKVVVTDSL 261 (334)
Q Consensus 186 ~~~~~~~~~~~~~~~~~g-d~Vl~d~~~H~s~~~-g~~ls~~~~g~~v~~~~~~D--~~~Le~~l~~~~~~~~lVv~e~v 261 (334)
+++ + ++| ....|..... ...... .+++++.++.++ ..+. .+ .+++++|++.++
T Consensus 118 ~~~--------------gv~~v--~~~~~~~~~~~~~~~~~--~g~~~~~v~~~~g~~~~~--~i---~~~~~~v~~~~~ 174 (398)
T 2fyf_A 118 IDK--------------RSLHL--TYGEFSAKFASAVSKNP--FVGEPIIITSDPGSAPEP--QT---DPSVDVIAWAHN 174 (398)
T ss_dssp CSS--------------CEEEE--ECSHHHHHHHHHHHHCT--TSCCCEEEECCTTCCCCC--CC---CTTCSEEEEESE
T ss_pred cCC--------------CeEEE--eCCHHHHHHHHHHHHhC--CCCceEEEecCCCCCCCc--cc---cCCCCEEEEeCc
Confidence 653 5 444 3444532211 111110 144555554321 1111 12 246889998899
Q ss_pred CCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc--cEEee
Q 019931 262 FSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG--GFIAC 333 (334)
Q Consensus 262 ~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G--G~i~~ 333 (334)
+|++|.+.|+++|.++ +|+++|+|++|+.+... .++. ++|+++.|+||.+|+.| |++++
T Consensus 175 ~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~---------~~~~-~~di~~~s~sK~~~~~gg~g~l~~ 235 (398)
T 2fyf_A 175 ETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLP---------VDIA-ETDAYYFAPQKNFASDGGLWLAIM 235 (398)
T ss_dssp ETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSC---------CCGG-GCSEEEECTTSTTCSCSSEEEEEE
T ss_pred CCCcceecchHHhhhh---cCCeEEEEeccccCCcc---------cCcc-cCcEEEEecCcccCCCCceEEEEE
Confidence 9999999999988887 89999999999865321 1222 36899999999999875 45554
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.1e-12 Score=124.50 Aligned_cols=164 Identities=14% Similarity=0.098 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhHhCCCc--E-EEeccHH-HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh
Q 019931 150 NYHRLLESCLADLKKKED--C-LLCPTGF-AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER 225 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~e~--a-lv~~sG~-~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~ 225 (334)
..-++++..+.+++|.+. . +++++++ +++.+++. .+++. ..+++.|+..+..|.|+..++.+.
T Consensus 98 ~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~-aar~~----------~~~~~~viv~r~aHkSv~kAl~l~-- 164 (450)
T 3bc8_A 98 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFL-TLRHK----------RPKAKYIIWPRIDQKSCFKSMVTA-- 164 (450)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHH-HHHHH----------CTTCCEEEEECCCCHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHH-Hcchh----------hcCCCEEEEECCcHHHHHHHHHHc--
Confidence 344567777777778654 3 6667776 45554444 44430 012466777788999999999999
Q ss_pred cCCcEEEEeeC--------CCHHHHHHHHhcCC-CCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccc
Q 019931 226 TKMVEVFVYKH--------CDMSHLKTLLSCCT-MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVC 296 (334)
Q Consensus 226 ~~g~~v~~~~~--------~D~~~Le~~l~~~~-~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~ 296 (334)
|..++.++. .|++.|+++|++.+ ..+.+|++.+.++..|.+.|+++|+++|++||++|+||+||+...
T Consensus 165 --Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~- 241 (450)
T 3bc8_A 165 --GFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQS- 241 (450)
T ss_dssp --TCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTC-
T ss_pred --CCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhh-
Confidence 777666543 28999999998754 245566666655556789999999999999999999999998532
Q ss_pred cCCCcccccccCCC-CCccEEEecCcccccC-CccEE
Q 019931 297 GKNGGGVAEQFNCE-RDVDICVGTLSKAAGC-QGGFI 331 (334)
Q Consensus 297 G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~-~GG~i 331 (334)
.. ...+.. ..+. .++|+++.|.+|.+.. .||.+
T Consensus 242 ~~-~~~l~~-~a~~~~~AD~~v~S~HK~l~a~~~~~~ 276 (450)
T 3bc8_A 242 SK-CMHLIQ-QGARVGRIDAFVQSLDKNFMVPVGGAI 276 (450)
T ss_dssp HH-HHHHHH-HHHHHSCCCEEEEEHHHHHSCCSSCEE
T ss_pred hh-hHhHHH-HHhcccCCCEEEECCccCCCchhccEE
Confidence 11 000110 0111 3689999999999966 45443
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-11 Score=121.12 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=104.8
Q ss_pred EEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC--------CCH
Q 019931 168 CLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH--------CDM 239 (334)
Q Consensus 168 alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~--------~D~ 239 (334)
.++.++++.++++++.+.++++. .+++.|+..+..|.|++.++.++ |.++++++. .|+
T Consensus 137 ~flVnGsTgg~lamilaa~r~~r----------pg~d~VIvpRn~HKSv~kAliL~----Gl~Pv~V~p~~d~~~~~id~ 202 (501)
T 3hl2_A 137 CFVVPMATGMSLTLCFLTLRHKR----------PKAKYIIWPRIDQKSCFKSMITA----GFEPVVIENVLEGDELRTDL 202 (501)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHC----------TTCCEEEEECCCCHHHHHHHHHT----TCEEEEECEEEETTEEEECH
T ss_pred EEEECcHHHHHHHHHHHHcCccc----------CCCCEEEEecchHHHHHHHHHHc----CCeEEEEeeeecccccCCCH
Confidence 46667777688888877776510 02478888999999999999999 888776643 289
Q ss_pred HHHHHHHhcCC-CCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEE
Q 019931 240 SHLKTLLSCCT-MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICV 317 (334)
Q Consensus 240 ~~Le~~l~~~~-~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~ 317 (334)
+.||++|++.+ ....+|++.+.++-.+.+.|+++|+++|++||++|+||+||+.-. .. ...+. +.+.+ ..+|+++
T Consensus 203 e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~-~~-~~~lp~sA~~~-GrAD~vV 279 (501)
T 3hl2_A 203 KAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQS-SK-CMHLIQQGARV-GRIDAFV 279 (501)
T ss_dssp HHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTC-HH-HHHHHHHHHHH-SCCCEEE
T ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhh-hh-hhhhHHHHHhc-CCCcEEE
Confidence 99999998763 233455565555544577899999999999999999999998642 11 00010 11111 2489999
Q ss_pred ecCcccccC-CccEEe
Q 019931 318 GTLSKAAGC-QGGFIA 332 (334)
Q Consensus 318 ~SlsKa~G~-~GG~i~ 332 (334)
.|.+|.+=. .||.++
T Consensus 280 qS~HK~llvpIGG~ii 295 (501)
T 3hl2_A 280 QSLDKNFMVPVGGAII 295 (501)
T ss_dssp EEHHHHHCCCSSCEEE
T ss_pred ecccccceeecCceEE
Confidence 999999843 566544
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.1e-11 Score=114.15 Aligned_cols=184 Identities=12% Similarity=-0.013 Sum_probs=119.1
Q ss_pred CccCCCCCCHHHHHHHHHhc-----CCCCc---cccccCchHHHHHHHHHHHhHhCCC--c-EEEe-ccHHHHHHHHHHH
Q 019931 117 NDYLGLSSHPTIAKAAARHG-----MGPRG---SALICGYTNYHRLLESCLADLKKKE--D-CLLC-PTGFAANMAVIVA 184 (334)
Q Consensus 117 n~yLgl~~~p~v~~a~~~~g-----~g~~~---sr~~~G~~~~~~~LE~~La~~~g~e--~-alv~-~sG~~An~~ai~a 184 (334)
|.+--..-+|+|.+++.++- .+++. +....-.....++.+++|++++|++ + ++|+ .+|++++..++..
T Consensus 17 n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~ 96 (377)
T 3e77_A 17 NLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLN 96 (377)
T ss_dssp CEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHh
Confidence 33444446899999887643 22221 1111112466789999999999975 3 4553 5889999999988
Q ss_pred HhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEc
Q 019931 185 VGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTD 259 (334)
Q Consensus 185 l~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e 259 (334)
+..+ .+||.|+.-...|.+. .+...++ ..|..++.++.+ ++++++..++ +++++|.+.
T Consensus 97 l~~~------------~~Gd~v~~~~~g~~~~-~~~~~a~-~~G~~~~~~~~~~~~~~~~~~~~~~i~---~~t~lV~~~ 159 (377)
T 3e77_A 97 LIGL------------KAGRCADYVVTGAWSA-KAAEEAK-KFGTINIVHPKLGSYTKIPDPSTWNLN---PDASYVYYC 159 (377)
T ss_dssp HGGG------------STTCEEEECCCSHHHH-HHHHHHT-TTSEEEECSCCCSSSCSCCCGGGCCCC---TTCSCEEEE
T ss_pred ccCC------------CCCCeEEEEECCHHHH-HHHHHHH-HhCCceEEeccCCCcCCCCChHHhccC---CCccEEEEe
Confidence 8753 1256665444445543 3344443 225665554432 4555544333 478888888
Q ss_pred CCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc-cEEe
Q 019931 260 SLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG-GFIA 332 (334)
Q Consensus 260 ~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G-G~i~ 332 (334)
+..+.+|.+.|+ +|+++|+++++|.+|++|... .++. +.++++.|-.|.+|+.| |++.
T Consensus 160 h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~---------id~~-~~~~~~~s~~K~~gp~G~g~l~ 218 (377)
T 3e77_A 160 ANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKP---------VDVS-KFGVIFAGAQKNVGSAGVTVVI 218 (377)
T ss_dssp SEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSC---------CCGG-GCSEEEEEGGGTTSCTTCEEEE
T ss_pred CccCchheEchh-----hhccCCCEEEEEcccccCCCC---------Cchh-hcCEEEEecccccCCCccEEEE
Confidence 888888999998 478899999999999987431 2222 23578899999999877 5554
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=8.6e-11 Score=113.86 Aligned_cols=174 Identities=13% Similarity=0.007 Sum_probs=108.3
Q ss_pred CCHHHHHHHHHh-----cCCCCc---cccccCchHHHHHHHHHHHhHhCCC--c-EEE-eccHHHHHHHHHHHHhhhhhh
Q 019931 124 SHPTIAKAAARH-----GMGPRG---SALICGYTNYHRLLESCLADLKKKE--D-CLL-CPTGFAANMAVIVAVGNIASL 191 (334)
Q Consensus 124 ~~p~v~~a~~~~-----g~g~~~---sr~~~G~~~~~~~LE~~La~~~g~e--~-alv-~~sG~~An~~ai~al~~~~~~ 191 (334)
-+|+|++++.++ +.+++. +....-.....++.++.+++++|++ . +++ +++|++++..++..++.+
T Consensus 38 ~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~~--- 114 (386)
T 3qm2_A 38 LPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGD--- 114 (386)
T ss_dssp CCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCTT---
T ss_pred CCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccCC---
Confidence 479999987543 333221 0111111345688999999999975 2 455 368999999999888754
Q ss_pred ccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC--------CHHHHHHHHhcCCCCcEEEEEcCCCC
Q 019931 192 LAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC--------DMSHLKTLLSCCTMRKKVVVTDSLFS 263 (334)
Q Consensus 192 ~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~--------D~~~Le~~l~~~~~~~~lVv~e~v~n 263 (334)
+|.|+.-...|.+- .+...+.+ .| ++..++.+ ++++++.+++ +++++|++.+..+
T Consensus 115 -----------gd~v~~~~~~~~~~-~~~~~a~~-~G-~v~~v~~~~~~~G~~~~~~~~~~~l~---~~t~lV~~~h~et 177 (386)
T 3qm2_A 115 -----------KTTADYVDAGYWAA-SAIKEAKK-YC-APQIIDAKITVDGKRAVKPMREWQLS---DNAAYLHYCPNET 177 (386)
T ss_dssp -----------CCEEEEEESSHHHH-HHHHHHTT-TS-EEEEEECEEEETTEEEECCGGGCCCC---TTCSCEEECSEET
T ss_pred -----------CCeEEEEeCCHHHH-HHHHHHHH-hC-CeEEEecCcccCCCCCCchHHHhhcC---CCCcEEEEECCcC
Confidence 45443222233332 23333322 25 56555432 4456655554 4788898888888
Q ss_pred CCCCc-cCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc-cEEe
Q 019931 264 MDGDF-APMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG-GFIA 332 (334)
Q Consensus 264 ~~G~~-~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G-G~i~ 332 (334)
.+|.+ .|+++|. +|+++++|.+|++|..- .++. +.|+++.|.+|.+|+.| |++.
T Consensus 178 ~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~p---------idv~-~~~~~~~s~hK~lGP~G~g~l~ 233 (386)
T 3qm2_A 178 IDGIAIDETPDFG-----PEVVVTADFSSTILSAP---------LDVS-RYGVIYAGAQKNIGPAGLTLVI 233 (386)
T ss_dssp TTTEECCCCCCCC-----TTCCEEEECTTTTTSSC---------CCGG-GCSEEEEETTTTTCCTTEEEEE
T ss_pred CcCEecCchhhhc-----CCCEEEEEcccccCCCC---------CCcc-ccCEEEEecccccCCCccEEEE
Confidence 88995 8998875 89999999999987431 2222 23577889999999877 6654
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.90 E-value=3.4e-09 Score=101.73 Aligned_cols=181 Identities=14% Similarity=0.047 Sum_probs=113.5
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhc-----CCCCc----cccccCchHHHHHHHHHHHhHhCCC---cEEE-eccHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHG-----MGPRG----SALICGYTNYHRLLESCLADLKKKE---DCLL-CPTGF 175 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g-----~g~~~----sr~~~G~~~~~~~LE~~La~~~g~e---~alv-~~sG~ 175 (334)
++.++|...- -.-+|+|++++.++- .+++. +|. .-.....++.++.+++++|++ .++| +++|+
T Consensus 4 ~~~~~f~pgp---t~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~-~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T 79 (361)
T 3m5u_A 4 MRKINFSAGP---STLPLEILEQAQKELCDYQGRGYSIMEISHRT-KVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGAS 79 (361)
T ss_dssp CCCEECCSSS---CCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSS-HHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHH
T ss_pred cceEeecCCC---CCCcHHHHHHHHHHHHhcccCCceeeccCCCC-HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHH
Confidence 3445665442 235899999887643 23221 111 112467788999999999974 3455 57889
Q ss_pred HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhc
Q 019931 176 AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSC 248 (334)
Q Consensus 176 ~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~ 248 (334)
+++..++..+. ++ ++.++|+.....|. +...+.+ .|.++..++.+ +++. + |+
T Consensus 80 ~a~n~~~~~~~-~~-----------~~~~~i~~~~~~~~----~~~~a~~-~G~~v~~~~~~~~g~~~~~~~~-~--l~- 138 (361)
T 3m5u_A 80 LQFAMIPMNLA-LN-----------GVCEYANTGVWTKK----AIKEAQI-LGVNVKTVASSEESNFDHIPRV-E--FS- 138 (361)
T ss_dssp HHHHHHHHHHC-CS-----------SCEEEEECSHHHHH----HHHHHHH-TTCCEEEEEECTTTTSCSCCCC-C--CC-
T ss_pred HHHHHHHHhcC-CC-----------CeEEEEeCCHHHHH----HHHHHHH-cCCceEEEecccCcCCCcCChh-h--cC-
Confidence 99999998776 41 01233444333332 2222222 25666655422 3444 3 43
Q ss_pred CCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc
Q 019931 249 CTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 249 ~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G 328 (334)
+++++|.+.+..+.+|.+.|. +++ +|+++++|.+|++|.+ ..++. ++|+++.|.+|.+|+.|
T Consensus 139 --~~t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~---------~id~~-~~d~~~~s~~K~~gp~G 200 (361)
T 3m5u_A 139 --DNADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSR---------KVDFS-NIALFYGGVQKNAGISG 200 (361)
T ss_dssp --TTSSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSS---------CCCCT-TEEEEEEETTTTSSCTT
T ss_pred --CCCCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCC---------CCCcc-cCCEEEEechhccCCCc
Confidence 478888888888888988662 344 4999999999998743 12333 47999999999999877
Q ss_pred -cEEe
Q 019931 329 -GFIA 332 (334)
Q Consensus 329 -G~i~ 332 (334)
|++.
T Consensus 201 ~g~l~ 205 (361)
T 3m5u_A 201 LSCIF 205 (361)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 6654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 334 | ||||
| d1fc4a_ | 401 | c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E | 1e-40 | |
| d1bs0a_ | 383 | c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-a | 1e-33 | |
| d2bwna1 | 396 | c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rho | 8e-32 | |
| d2aeua1 | 366 | c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar | 1e-10 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 6e-09 | |
| d2e7ja1 | 364 | c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase ( | 4e-07 | |
| d1m6sa_ | 343 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 1e-06 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 1e-06 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 1e-06 | |
| d1v72a1 | 345 | c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps | 2e-06 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-05 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 4e-04 |
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Score = 144 bits (364), Expect = 1e-40
Identities = 81/234 (34%), Positives = 113/234 (48%), Gaps = 26/234 (11%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
++ F N+YLGL++HP + AA HG G ICG + H+ LE LA
Sbjct: 45 SHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLG 104
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
ED +L + F AN + ++ + AI SDALNHASIIDG+R+
Sbjct: 105 MEDAILYSSCFDANGGLF--------------ETLLGAEDAIISDALNHASIIDGVRL-- 148
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCC---TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKY 281
+ + Y + DM L+ L R ++ TD +FSMDG A + + L KY
Sbjct: 149 --CKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKY 206
Query: 282 GFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQGGFIACR 334
L+++DD+H G+NG G E + VDI GTL KA G GG+ A R
Sbjct: 207 DALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAAR 260
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Score = 125 bits (315), Expect = 1e-33
Identities = 76/230 (33%), Positives = 119/230 (51%), Gaps = 24/230 (10%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
++ L FS NDYLGLS HP I +A + G+G GS + GY+ H+ LE LA+
Sbjct: 38 RQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG 97
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
LL +GFAAN AVI + ++ I +D L+HAS+++ ++
Sbjct: 98 YSRALLFISGFAANQAVIA--------------AMMAKEDRIAADRLSHASLLEAASLSP 143
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFL 284
+ H D++HL LL+ +++VVT+ +FSMDGD AP+ E+ ++ +++
Sbjct: 144 SQLRR----FAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGW 199
Query: 285 LVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334
L++DDAHGT V G+ G G + ++ V T K G G + C
Sbjct: 200 LMVDDAHGTGVIGEQGRGSCWLQKVKP--ELLVVTFGKGFGVSGAAVLCS 247
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Score = 120 bits (302), Expect = 8e-32
Identities = 72/230 (31%), Positives = 115/230 (50%), Gaps = 19/230 (8%)
Query: 109 KRLLLFSGNDYLGLSSHPTIAKAAA----RHGMGPRGSALICGYTNYHRLLESCLADLKK 164
+ + ++ GNDYLG+ HP + A G G G+ I G T YHR LE+ +A L +
Sbjct: 45 QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ 104
Query: 165 KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224
KE L+ + + AN A + + + I+SD+LNHAS+I+GI+
Sbjct: 105 KEAALVFSSAYNANDATLSTLRV------------LFPGLIIYSDSLNHASMIEGIKRNA 152
Query: 225 RTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFL 284
K + + + + + K++ +S++SMDGDF P+ E+ + ++G L
Sbjct: 153 GPKRI---FRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGAL 209
Query: 285 LVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334
+D+ H + G G GVAE+ +DI GTL+KA G GG+IA
Sbjct: 210 TYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFGGYIAAS 259
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 59.9 bits (144), Expect = 1e-10
Identities = 32/218 (14%), Positives = 64/218 (29%), Gaps = 30/218 (13%)
Query: 117 NDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFA 176
D GLS I + GS+ + + + C+ +
Sbjct: 23 YDLSGLSGGFLIDEKDKALLNTYIGSS---YFAEKVNEYGLKHLGGDENDKCVGFNRTSS 79
Query: 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH 236
A +A I+A+ K + H SI +I K+
Sbjct: 80 AILATILALKP------------KKVIH-YLPELPGHPSIERSCKIVN---------AKY 117
Query: 237 CDMSHLKTLLSCCTMRKKVVVTDSLFSMDG-DFAPMVELVKLRRKYGFLLVLDDAHGTFV 295
+ + +L+ V++T S + + +++ + ++ +DDA G V
Sbjct: 118 FESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARV 177
Query: 296 CGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
A + D+ V + K G +
Sbjct: 178 RLLFNQPPA----LKLGADLVVTSTDKLMEGPRGGLLA 211
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 54.5 bits (130), Expect = 6e-09
Identities = 42/262 (16%), Positives = 76/262 (29%), Gaps = 31/262 (11%)
Query: 102 ITFARQFKRLLLFSGNDYLGLSSH----------PTIAKAAARHGMGPRGSALICGYTNY 151
T + ++ SG + L S T A + RG G +Y
Sbjct: 17 RTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRSY 76
Query: 152 HRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDAL 211
+ L ES + ++ + + G A I + G ++S F D
Sbjct: 77 YALAES-VKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTT 135
Query: 212 NHASIIDGIRI------AERTKMVEVFVYKHCDMSHLKTLLSCCT-MRKKVVVTDSLFSM 264
S I+G + V + D+ L+ + +V +
Sbjct: 136 QGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNS 195
Query: 265 DG----DFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE---------R 311
G A + + + +KY +V+D A AE + +
Sbjct: 196 AGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYK 255
Query: 312 DVDICVGTLSKAAGCQGGFIAC 333
D+ + K A G + C
Sbjct: 256 YADMLAMSAKKDAMVPMGGLLC 277
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 48.7 bits (114), Expect = 4e-07
Identities = 24/222 (10%), Positives = 52/222 (23%), Gaps = 32/222 (14%)
Query: 125 HPTIAKAAARHGMGPRGSALICGYTNY-------HRLLESCLADLKKKEDCLLCPTGFAA 177
+A G G H + + L + + A
Sbjct: 15 TEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREA 74
Query: 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC 237
AV+ ++ + + D H S A +
Sbjct: 75 KFAVMHSLAK--------------KDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPD 120
Query: 238 DMSHLKTLLSCCTMRK-----KVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHG 292
+ K + + G+ + ++ K+ +Y L+++ A+
Sbjct: 121 YAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYA 180
Query: 293 TFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIACR 334
+ D + G S AA G + +
Sbjct: 181 IGRMPVSL------KEIGADFIVGSGHKSMAASGPIGVMGMK 216
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 47.5 bits (111), Expect = 1e-06
Identities = 25/177 (14%), Positives = 47/177 (26%), Gaps = 6/177 (3%)
Query: 151 YHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDA 210
LE A+ KE L P+G N I+A + + S
Sbjct: 35 TINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAV 94
Query: 211 LNHASIIDG-IRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFA 269
L+ + + ++ +T L +
Sbjct: 95 LSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTH-----NRSGGRVVPLE 149
Query: 270 PMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC 326
+ E+ + +++G + +D A +G V E V C+ A
Sbjct: 150 NIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVG 206
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 47.6 bits (112), Expect = 1e-06
Identities = 32/241 (13%), Positives = 66/241 (27%), Gaps = 35/241 (14%)
Query: 113 LFSGNDYLGLSSHPTIAKAAAR------HGMGPRGS-----ALICGYTNYHRLLESCLAD 161
+ +G T +K HG+G G+ G + + L L
Sbjct: 62 KDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILES 121
Query: 162 LKK----KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASII 217
K + P +++ L A +K + I +H S I
Sbjct: 122 FFKQLGLNVHAIATPISTGMSIS--------LCLSAARKKYGSNVVIY---PYASHKSPI 170
Query: 218 DGIRIAERTKMVEVFVY----KHCDMSHLKTLLSCCTMRKKV--VVTDSLFSMDGDFAPM 271
+ + V + + ++ + V++ F + +
Sbjct: 171 KAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDI 230
Query: 272 VELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFI 331
VE+ K+ Y +++ A+ + + VD V + K G
Sbjct: 231 VEIAKICENYDIPHIINGAYAIQNNYYLEK---LKKAFKYRVDAVVSSSDKNLLTPIGGG 287
Query: 332 A 332
Sbjct: 288 L 288
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 47.5 bits (112), Expect = 1e-06
Identities = 26/194 (13%), Positives = 49/194 (25%), Gaps = 20/194 (10%)
Query: 155 LESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDE-KSFKDEKIAIFSDALNH 213
LE + +L + + G A + G F N
Sbjct: 80 LEKTVKELFGFKHIVPTHQGRGAENLLSQLAIK-----PGQYVAGNMYFTTTRFHQEKNG 134
Query: 214 ASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAP--- 270
A+ +D +R + + D++ L TL+ + ++ P
Sbjct: 135 ATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSM 194
Query: 271 --MVELVKLRRKYGFLLVLDDAH--------GTFVCGKNGGGVAEQF-NCERDVDICVGT 319
M + ++ YG + D G + + D C +
Sbjct: 195 ANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMS 254
Query: 320 LSKAAGCQGGFIAC 333
K G C
Sbjct: 255 GKKDCLVNIGGFLC 268
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Score = 46.7 bits (109), Expect = 2e-06
Identities = 26/224 (11%), Positives = 54/224 (24%), Gaps = 9/224 (4%)
Query: 111 LLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLL 170
L FS ++ G P +A+A +H G A G ++ ++ +++ +
Sbjct: 4 ALGFSSDNIAGA--SPEVAQALVKH---SSGQAGPYGTDELTAQVKRKFCEIFERDVEVF 58
Query: 171 -CPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMV 229
PTG AAN + + A S + +
Sbjct: 59 LVPTGTAANALCL---SAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAK 115
Query: 230 EVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDD 289
V + + + + + + + L +D
Sbjct: 116 LDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDG 175
Query: 290 AHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGGFIAC 333
+ G AE + G +
Sbjct: 176 SRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLF 219
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 44.1 bits (103), Expect = 1e-05
Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 7/114 (6%)
Query: 227 KMVEVFVYKHCDMS-HLKTLLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYG 282
K VEV Y+ + ++ L T + + ++ +S + G + E+ ++
Sbjct: 133 KPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHD 192
Query: 283 FLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKA---AGCQGGFIAC 333
+++ D+ + F+ + + I V SK G + GF+A
Sbjct: 193 LIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAA 246
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 39.5 bits (91), Expect = 4e-04
Identities = 24/202 (11%), Positives = 54/202 (26%), Gaps = 28/202 (13%)
Query: 155 LESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAI----FSDA 210
L+ +L + + G A + + L ++ + I F
Sbjct: 80 LKDKAKELFNYDYIIPAHQGRGAENILFPVL-----LKYKQKEGKAKNPVFISNFHFDTT 134
Query: 211 LNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMD 265
H + I T+ D+ LK ++ V + ++
Sbjct: 135 AAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNS 194
Query: 266 GDFAP-----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE---------R 311
P + E+ ++ +++G +V+D A + N +
Sbjct: 195 AGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYK 254
Query: 312 DVDICVGTLSKAAGCQGGFIAC 333
D + K G +
Sbjct: 255 YADALTMSAKKDPLLNIGGLVA 276
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 334 | |||
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 100.0 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 100.0 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.94 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.87 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.86 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.86 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.86 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.86 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.85 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.85 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.85 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.84 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.84 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.84 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.84 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.82 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.82 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.82 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.8 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.8 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.79 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.79 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.79 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.79 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.79 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.77 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.77 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.77 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.77 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.76 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.76 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.75 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.75 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.75 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.75 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.74 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.74 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.73 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.73 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.72 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.71 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.7 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.7 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.68 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.67 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.67 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.66 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.66 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.64 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.64 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.62 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.62 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.62 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.61 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.61 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.61 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.59 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.57 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.56 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.56 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.54 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.51 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.51 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.51 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.49 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.47 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.47 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.46 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.45 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.41 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.39 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.37 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.36 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.3 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.29 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.29 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.28 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.26 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.1 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.06 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 98.67 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 98.59 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 98.26 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.15 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 97.53 |
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=100.00 E-value=9.7e-53 Score=408.07 Aligned_cols=253 Identities=32% Similarity=0.547 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHHHHccccccccccccCCCCccccccCCCCCCCCcchhcccccccccceeeeechhhhhhhhcccCCCCC
Q 019931 7 WDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQISISDSTFQRWLHDVPSSGD 86 (334)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 86 (334)
|+..++++|++|+++|+||++++++..... .| ..+ |... .
T Consensus 2 ~~~~~~~~l~~l~~~g~~r~~~~~~~~~~~-------------~~--------------~~~--------~~~~---~-- 41 (396)
T d2bwna1 2 YNLALDKAIQKLHDEGRYRTFIDIEREKGA-------------FP--------------KAQ--------WNRP---D-- 41 (396)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCEEEECTTS-------------TT--------------EEE--------EECT---T--
T ss_pred hHHHHHHHHHHHHHcCCCccccccccccCC-------------CC--------------cce--------Eeec---C--
Confidence 678899999999999999999887643321 00 000 0000 1
Q ss_pred CcceeecCCCCCcccchhcccceeEEEeecCccCCCCCCHHHHH----HHHHhcCCCCccccccCchHHHHHHHHHHHhH
Q 019931 87 ENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAK----AAARHGMGPRGSALICGYTNYHRLLESCLADL 162 (334)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~~~l~f~sn~yLgl~~~p~v~~----a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~ 162 (334)
..+++++||+|||||||++||+|++ ++++||.|+++||+++|+.++|++||++||+|
T Consensus 42 -------------------~~~~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~ 102 (396)
T d2bwna1 42 -------------------GGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGL 102 (396)
T ss_dssp -------------------SCEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHH
T ss_pred -------------------CCCeEEEEEEcccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHH
Confidence 2239999999999999999999998 55789999999999999999999999999999
Q ss_pred hCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHH
Q 019931 163 KKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHL 242 (334)
Q Consensus 163 ~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~L 242 (334)
+|.|.+++|+||+.||.+++.++... +++|+|+.|+.+|+|++++++++ ++++++|+|||+++|
T Consensus 103 ~g~e~all~~sG~~An~~~i~~l~~~------------~~~d~i~~D~~~Hasi~~g~~ls----~a~~~~f~Hnd~~~l 166 (396)
T d2bwna1 103 HQKEAALVFSSAYNANDATLSTLRVL------------FPGLIIYSDSLNHASMIEGIKRN----AGPKRIFRHNDVAHL 166 (396)
T ss_dssp TTCSEEEEESCHHHHHHHHHHHHHHH------------STTCEEEEETTCCHHHHHHHHHS----CCCEEEECTTCHHHH
T ss_pred hCCCceeeeecchHHHHHHHHHHhcc------------cCCCceeehhhhhhccchhhhcc----ccCceEeecchHHHh
Confidence 99999999999999999999998653 24899999999999999999999 899999999999999
Q ss_pred HHHHhcCC-CCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCc
Q 019931 243 KTLLSCCT-MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLS 321 (334)
Q Consensus 243 e~~l~~~~-~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sls 321 (334)
+++++... .++++|++|++|||+|+++||++|.+||++||++|++||||++|++|++|+|+++++++.+++||+++||+
T Consensus 167 ~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTls 246 (396)
T d2bwna1 167 RELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLA 246 (396)
T ss_dssp HHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESS
T ss_pred hhHHhhhcccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeeccc
Confidence 99987643 46689999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred ccccCCccEEeeC
Q 019931 322 KAAGCQGGFIACR 334 (334)
Q Consensus 322 Ka~G~~GG~i~~~ 334 (334)
|+||+.||||+|+
T Consensus 247 Ka~g~~Gg~v~~~ 259 (396)
T d2bwna1 247 KAYGVFGGYIAAS 259 (396)
T ss_dssp STTCSCCEEEEEC
T ss_pred ccccccccccchh
Confidence 9999999999985
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.9e-49 Score=379.70 Aligned_cols=243 Identities=35% Similarity=0.532 Sum_probs=224.5
Q ss_pred hHHHHHHHHHHHHHHccccccccccccCCCCccccccCCCCCCCCcchhcccccccccceeeeechhhhhhhhcccCCCC
Q 019931 6 LWDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQISISDSTFQRWLHDVPSSG 85 (334)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 85 (334)
+|++.++.+|+++++++++|+++++...++. ++++ +|
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~-----------------------------~i~~--------------~g 37 (383)
T d1bs0a_ 1 SWQEKINAALDARRAADALRRRYPVAQGAGR-----------------------------WLVA--------------DD 37 (383)
T ss_dssp CHHHHHHHHHHHCCGGGCCCCCCCCSBCSSS-----------------------------EEEE--------------TT
T ss_pred ChHHHHHHHHHHHHHhCCCccccccCCCCCC-----------------------------eEEE--------------CC
Confidence 5999999999999999999999998766554 2322 45
Q ss_pred CCcceeecCCCCCcccchhcccceeEEEeecCccCCCCCCHHHHH----HHHHhcCCCCccccccCchHHHHHHHHHHHh
Q 019931 86 DENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAK----AAARHGMGPRGSALICGYTNYHRLLESCLAD 161 (334)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~g~~~l~f~sn~yLgl~~~p~v~~----a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~ 161 (334)
|+|+||+|||||||++||+|++ ++++||.|+++||.++|+.++|.+||++||+
T Consensus 38 -----------------------~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~ 94 (383)
T d1bs0a_ 38 -----------------------RQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAE 94 (383)
T ss_dssp -----------------------EEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHH
T ss_pred -----------------------eEEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHH
Confidence 9999999999999999999998 5578999999999999999999999999999
Q ss_pred HhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHH
Q 019931 162 LKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSH 241 (334)
Q Consensus 162 ~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~ 241 (334)
|+|.|.+++|+||++||+.++.++..+ +|.|++|..+|++++++++++ ++++++|+|+|+++
T Consensus 95 ~~g~e~al~~~SG~~an~~~i~al~~~--------------~d~v~~d~~~h~si~~g~~~~----~~~~~~~~hnd~~~ 156 (383)
T d1bs0a_ 95 WLGYSRALLFISGFAANQAVIAAMMAK--------------EDRIAADRLSHASLLEAASLS----PSQLRRFAHNDVTH 156 (383)
T ss_dssp HHTCSEEEEESCHHHHHHHHHHHHCCT--------------TCEEEEETTCCHHHHHHHHTS----SSEEEEECTTCHHH
T ss_pred hcCCCceEEecccchhhHHHHHhhcCC--------------CceEEeeccccHHHhhccccC----CCcceEecchHHHH
Confidence 999999999999999999999998875 899999999999999999988 78999999999999
Q ss_pred HHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCc
Q 019931 242 LKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLS 321 (334)
Q Consensus 242 Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sls 321 (334)
||+.+.+.++++++|++|++|||+|+++|+++|.++|++||++|++||||++|++|++|+|.++++++.+ |+++.||+
T Consensus 157 le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~--~~~~~t~~ 234 (383)
T d1bs0a_ 157 LARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKP--ELLVVTFG 234 (383)
T ss_dssp HHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCC--SEEEEESS
T ss_pred HHHHhcccCCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCcc--cccccccc
Confidence 9999988766789999999999999999999999999999999999999999999999999998888755 57788999
Q ss_pred ccccCCccEEeeC
Q 019931 322 KAAGCQGGFIACR 334 (334)
Q Consensus 322 Ka~G~~GG~i~~~ 334 (334)
|++|+.||+++++
T Consensus 235 ka~g~~Gg~v~~~ 247 (383)
T d1bs0a_ 235 KGFGVSGAAVLCS 247 (383)
T ss_dssp STTSSCCEEEEEC
T ss_pred ccccccccccccc
Confidence 9999999999874
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-47 Score=373.52 Aligned_cols=249 Identities=34% Similarity=0.512 Sum_probs=224.5
Q ss_pred chh-hHHHHHHHHHHHHHHccccccccccccCCCCccccccCCCCCCCCcchhcccccccccceeeeechhhhhhhhccc
Q 019931 3 NSS-LWDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQISISDSTFQRWLHDV 81 (334)
Q Consensus 3 ~~~-~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (334)
+|. .|.++++++|++++++|+||+.+++...++. ++
T Consensus 3 ~m~~~~~~~~~~~l~~~~~~g~~r~~~~i~~~~g~-----------------------------~v-------------- 39 (401)
T d1fc4a_ 3 HMRGEFYQQLTNDLETARAEGLFKEERIITSAQQA-----------------------------DI-------------- 39 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCCBCSCSSS-----------------------------EE--------------
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCCcceeccCCCCC-----------------------------eE--------------
Confidence 453 5788899999999999999999998765544 22
Q ss_pred CCCCCCcceeecCCCCCcccchhcccceeEEEeecCccCCCCCCHHHHHH----HHHhcCCCCccccccCchHHHHHHHH
Q 019931 82 PSSGDENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAKA----AARHGMGPRGSALICGYTNYHRLLES 157 (334)
Q Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~l~f~sn~yLgl~~~p~v~~a----~~~~g~g~~~sr~~~G~~~~~~~LE~ 157 (334)
++.+||+||||+|||||||++||+|+++ +++||.+++++|...|+.+.+++||+
T Consensus 40 ----------------------~~~dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~ 97 (401)
T d1fc4a_ 40 ----------------------TVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQ 97 (401)
T ss_dssp ----------------------EBTTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHH
T ss_pred ----------------------EecCCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHH
Confidence 1134599999999999999999999984 56799999999999999999999999
Q ss_pred HHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC
Q 019931 158 CLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC 237 (334)
Q Consensus 158 ~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~ 237 (334)
+|++++|.+.+++|+||++||++++.++.++ +|.|+.|..+|+++.+|+.++ ++++.+++|+
T Consensus 98 ~lA~~~g~e~al~~~SG~~An~~~i~~l~~~--------------~d~i~~d~~~h~s~~~G~~~~----~a~~~~~~~~ 159 (401)
T d1fc4a_ 98 KLAAFLGMEDAILYSSCFDANGGLFETLLGA--------------EDAIISDALNHASIIDGVRLC----KAKRYRYANN 159 (401)
T ss_dssp HHHHHHTCSEEEEESCHHHHHHTTHHHHCCT--------------TCEEEEETTCCHHHHHHHHTS----CSEEEEECTT
T ss_pred HHHHhhcCCceEEecchhhhhHHHHHHhcCC--------------CcEEEeCCcchHHHHcccccc----CceEEEEcCC
Confidence 9999999999999999999999999998764 899999999999999999988 7899999999
Q ss_pred CHHHHHHHHhcC---CCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCcc
Q 019931 238 DMSHLKTLLSCC---TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVD 314 (334)
Q Consensus 238 D~~~Le~~l~~~---~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~D 314 (334)
|++++++++++. ...+++|++|++|||+|+++||++|++||++||++||+||||++|++|.+|+|..+++++.+++|
T Consensus 160 d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~d 239 (401)
T d1fc4a_ 160 DMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVD 239 (401)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCS
T ss_pred ChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCe
Confidence 999999988653 34568999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcccccC-CccEEeeC
Q 019931 315 ICVGTLSKAAGC-QGGFIACR 334 (334)
Q Consensus 315 iv~~SlsKa~G~-~GG~i~~~ 334 (334)
|+++||+|+||+ .||+++++
T Consensus 240 ii~~tl~Ka~gg~~Gg~v~g~ 260 (401)
T d1fc4a_ 240 IITGTLGKALGGASGGYTAAR 260 (401)
T ss_dssp EEEEESSSTTCSSSCEEEEEC
T ss_pred EEEeecccccccCCcccccCC
Confidence 999999999955 69999875
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.94 E-value=2e-26 Score=216.54 Aligned_cols=184 Identities=13% Similarity=0.086 Sum_probs=146.6
Q ss_pred CCHHHHHHHHHhcCCCCccccccC-------chHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCC
Q 019931 124 SHPTIAKAAARHGMGPRGSALICG-------YTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDE 196 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G-------~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~ 196 (334)
-+|+.++|+.+|+.|.+.+++..+ ..++++.+|+++|+++|.|+++++++|++||..++.+++++
T Consensus 14 l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~~~-------- 85 (364)
T d2e7ja1 14 LTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKK-------- 85 (364)
T ss_dssp CCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCT--------
T ss_pred CCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHhCC--------
Confidence 478999999999988655443322 12478999999999999999999999999999999999875
Q ss_pred ccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCC--CCcEEEEEcCCCCCCCC
Q 019931 197 KSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCT--MRKKVVVTDSLFSMDGD 267 (334)
Q Consensus 197 ~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~--~~~~lVv~e~v~n~~G~ 267 (334)
||.|+++...|.+++.+++.+ |++++.++++ |++++++++++.. .++++|++++++|++|.
T Consensus 86 ------gd~Vi~~~~~h~s~~~~~~~~----g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~ 155 (364)
T d2e7ja1 86 ------DAWVVMDENCHYSSYVAAERA----GLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGN 155 (364)
T ss_dssp ------TCEEEEETTCCHHHHHHHHHT----TCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCC
T ss_pred ------CcEEEeecccccccchHHHhc----cceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCce
Confidence 899999999999999998877 8999998864 6899999997643 34678999999999999
Q ss_pred ccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc--cEEee
Q 019931 268 FAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG--GFIAC 333 (334)
Q Consensus 268 ~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G--G~i~~ 333 (334)
+.|+++|.++|++||+++++|++|+.|.++.... ..++|++++|++|.||+.| |++++
T Consensus 156 ~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~--------~~g~D~~~~S~~K~~~~~g~~g~l~~ 215 (364)
T d2e7ja1 156 LPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLK--------EIGADFIVGSGHKSMAASGPIGVMGM 215 (364)
T ss_dssp CCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHH--------HHTCSEEEEEHHHHSSCCSSCEEEEE
T ss_pred eecchhheeccccccchhhccccchhhhhhhccc--------ccccceeeeccccccCCCCCEEEEEE
Confidence 9999999999999999999999999775532111 1247899999999998765 77765
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=1.3e-21 Score=187.92 Aligned_cols=200 Identities=18% Similarity=0.180 Sum_probs=150.3
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~A 177 (334)
+|.+||+||||.+. ..||. +||+|.+|+.+. ..+...+.... ++...++.+++.+.... +++.+++||++|
T Consensus 32 ~d~dG~~ylD~~~g~~~~~lGh-~hp~v~~a~~~~~~~~~~~~~~~~--~~~~~~la~~l~~~~~~~~~~v~f~~sGseA 108 (387)
T d1vefa1 32 WDAEGNEYIDCVGGYGVANLGH-GNPEVVEAVKRQAETLMAMPQTLP--TPMRGEFYRTLTAILPPELNRVFPVNSGTEA 108 (387)
T ss_dssp EETTSCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCCTTSC--CHHHHHHHHHHHHTSCTTEEEEEEESSHHHH
T ss_pred EECCCCEEEEcchhHHhhhhcC-CcHHHHHHHHHHHHhhcccccccC--CchHHHHHHHhhhhccccceeeccccCchHH
Confidence 46778999999773 45777 699999977543 22222122222 46667777777776654 357888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc--------CCcEEEEeeCCCHHHHHHHHhcC
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT--------KMVEVFVYKHCDMSHLKTLLSCC 249 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~--------~g~~v~~~~~~D~~~Le~~l~~~ 249 (334)
|..+++....- +++..+|..+..+|+.......++... ....+..++++|++.|++.+.+
T Consensus 109 ~e~Aik~Ar~~-----------t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~~~~- 176 (387)
T d1vefa1 109 NEAALKFARAH-----------TGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDE- 176 (387)
T ss_dssp HHHHHHHHHHH-----------HSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCT-
T ss_pred HHHHHHHHHhh-----------cccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCCCHHHHHHhcCC-
Confidence 99999865431 245677888888999877666654210 1234677899999999998864
Q ss_pred CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccc
Q 019931 250 TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAA 324 (334)
Q Consensus 250 ~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~ 324 (334)
+...|++|++.++.|...| |++|+++|++||++||+||+++. +|++|.+++ +++++.| ||+ +++|++
T Consensus 177 --~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG--fgR~G~~~~~~~~~v~P--Di~--~~gK~l 248 (387)
T d1vefa1 177 --ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTG--MGRTGKRFAFEHFGIVP--DIL--TLAKAL 248 (387)
T ss_dssp --TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSSSTHHHHTCCC--SEE--EECGGG
T ss_pred --CeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccc--cCccCCCcccccCCcCC--cee--eecccC
Confidence 7889999999999998766 99999999999999999999984 789988764 7889887 555 899999
Q ss_pred cC
Q 019931 325 GC 326 (334)
Q Consensus 325 G~ 326 (334)
|.
T Consensus 249 ~g 250 (387)
T d1vefa1 249 GG 250 (387)
T ss_dssp GT
T ss_pred CC
Confidence 73
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.8e-21 Score=184.87 Aligned_cols=209 Identities=16% Similarity=0.124 Sum_probs=155.6
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHH-hcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAAR-HGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~-~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
+|++|++||||+++ ..||. +||+|++|+++ ...+...++... +....++++.++++.+.+.+++++||++|+.
T Consensus 36 ~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~Av~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e 112 (404)
T d2byla1 36 WDVEGRKYFDFLSSISAVNQGH-CHPKIVNALKSQVDKLTLTSRAFY--NNVLGEYEEYITKLFNYHKVLPMNTGVEAGE 112 (404)
T ss_dssp EETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCCCCCTTEE--ESSHHHHHHHHHHHHTCSEEEEESSHHHHHH
T ss_pred EECCCCEEEEecCCHHHHhhcC-CCHHHHHHHHHHHhhCCCcccccc--cchHHHHHHhhhhcccccccccccCccccch
Confidence 56788999999884 45777 59999998764 444333333222 3556788999999999999999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhh----c----CCcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAER----T----KMVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~----~----~g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
.+++........ ......++..++..+..+|......+..... . ....+..++++|+++++++++. +
T Consensus 113 ~Aik~ar~~~~~---~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~l~~--~ 187 (404)
T d2byla1 113 TACKLARKWGYT---VKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQD--P 187 (404)
T ss_dssp HHHHHHHHHHHH---TTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTTCHHHHHHHHTS--T
T ss_pred hHHHHHHHHhhh---ccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecccCHHHHHHhcCC--C
Confidence 999875432100 0001123456777889999876655443210 0 1124567889999999999975 3
Q ss_pred CcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccccC
Q 019931 252 RKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G~ 326 (334)
+...|++|++.+..|.+.| |++|+++|++||++||+||+++ | +|++|.+++ +++++.| ||+ ||+|++|.
T Consensus 188 ~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G-fgR~G~~~a~~~~gv~P--Di~--~~gK~l~g 261 (404)
T d2byla1 188 NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT-G-LARTGRWLAVDYENVRP--DIV--LLGKALSG 261 (404)
T ss_dssp TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSGGGGGTCCC--SEE--EECGGGGT
T ss_pred CeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccc-c-cccccccchhhhcCCCC--CEE--EECchhhC
Confidence 6788999999999997766 9999999999999999999997 5 789998764 7889987 566 89999973
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=5.7e-22 Score=189.78 Aligned_cols=216 Identities=19% Similarity=0.227 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHccccccccccccCCCCccccccCCCCCCCCcchhcccccccccceeeeechhhhhhhhcccCCCCCCc
Q 019931 9 KWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQISISDSTFQRWLHDVPSSGDEN 88 (334)
Q Consensus 9 ~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 88 (334)
+.+|+++.++.+++..||...|++++++
T Consensus 8 ~~~D~ei~~~i~~e~~rq~~~i~LiaSE---------------------------------------------------- 35 (416)
T d1dfoa_ 8 ADYDAELWQAMEQEKVRQEEHIELIASE---------------------------------------------------- 35 (416)
T ss_dssp HHHCHHHHHHHHHHHHHHHHSEECCTTC----------------------------------------------------
T ss_pred hhcCHHHHHHHHHHHHHHHcCceEecCc----------------------------------------------------
Confidence 5688999999999999999999999887
Q ss_pred ceeecCCCCCcccchhcccceeEEEeecCccCCCCCCHHHHHHH-----HHhcCCCCccccccCchHHHHHHH----HHH
Q 019931 89 EIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAKAA-----ARHGMGPRGSALICGYTNYHRLLE----SCL 159 (334)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~l~f~sn~yLgl~~~p~v~~a~-----~~~g~g~~~sr~~~G~~~~~~~LE----~~L 159 (334)
|+.| |.|+++. .+|..|.++.|++.|+. ..+++| ++.
T Consensus 36 ------------------------N~~S---------~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~-~iD~iE~la~~ra 81 (416)
T d1dfoa_ 36 ------------------------NYTS---------PRVMQAQGSQLTNKYAEGYPGKRYYGGCE-YVDIVEQLAIDRA 81 (416)
T ss_dssp ------------------------CCCC---------HHHHHHHTSGGGGCCCCEETTEESSSCCH-HHHHHHHHHHHHH
T ss_pred ------------------------ccCC---------HHHHHHhcCcccCcccCCCCCCcccCCCh-hHHHHHHHHHHHH
Confidence 4444 6666643 57899999999988874 446665 444
Q ss_pred HhHhCCCcEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhh-HHHHHHhhhcCCcEEEEeeC-
Q 019931 160 ADLKKKEDCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASI-IDGIRIAERTKMVEVFVYKH- 236 (334)
Q Consensus 160 a~~~g~e~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~-~~g~~ls~~~~g~~v~~~~~- 236 (334)
.++||++.+-+. .||+.||++++.++++| ||.|+...+.|+.. .++..........+.+.|..
T Consensus 82 ~~lF~a~~anVqp~SGs~AN~av~~All~p--------------GD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d 147 (416)
T d1dfoa_ 82 KELFGADYANVQPHSGSQANFAVYTALLEP--------------GDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGID 147 (416)
T ss_dssp HHHHTCSEEECCCSSHHHHHHHHHHHHCCT--------------TCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBC
T ss_pred HHHhCCCcceeecccCccHHHHHHHHhcCC--------------CCeeeeccccccccccccccccccCceEEEEecccC
Confidence 568999998775 89999999999999986 89999988877652 22222211111345666653
Q ss_pred ----CCHHHHHHHHhcCCCCcEEEEE-cCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCC
Q 019931 237 ----CDMSHLKTLLSCCTMRKKVVVT-DSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCER 311 (334)
Q Consensus 237 ----~D~~~Le~~l~~~~~~~~lVv~-e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~ 311 (334)
-|++.+++++++. ++++|++ .+.| ....|+++++++|++.|++|++|.+|..|++. .|. +.++.+
T Consensus 148 ~~~~IDyd~l~~~a~~~--kPklIi~G~S~y---~r~~d~~~~reiad~vga~l~~D~aH~~GLIa---~g~--~~sP~~ 217 (416)
T d1dfoa_ 148 ATGHIDYADLEKQAKEH--KPKMIIGGFSAY---SGVVDWAKMREIADSIGAYLFVDMAHVAGLVA---AGV--YPNPVP 217 (416)
T ss_dssp SSSSBCHHHHHHHHHHH--CCSEEEEECSSC---CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHH---HTS--SCCCTT
T ss_pred CccCccHHHHHHHHHHh--ccceEEeccccc---ccccCHHHHHHHHHhcCceEEcchhhhhccee---ccc--cCCccc
Confidence 3999999999875 5566554 4444 45889999999999999999999999999873 233 345567
Q ss_pred CccEEEecCcccc-cCCccEEeeC
Q 019931 312 DVDICVGTLSKAA-GCQGGFIACR 334 (334)
Q Consensus 312 ~~Div~~SlsKa~-G~~GG~i~~~ 334 (334)
.+||+++|++|+| |+.||+|+++
T Consensus 218 ~aDvvt~tThKtlrGPrggiI~~~ 241 (416)
T d1dfoa_ 218 HAHVVTTTTHKTLAGPRGGLILAK 241 (416)
T ss_dssp TSSEEEEESSSTTCCCSCEEEEES
T ss_pred ccceeeeehhhcccCCCceEEEec
Confidence 7899999999999 7789999873
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.86 E-value=4.7e-21 Score=186.09 Aligned_cols=200 Identities=19% Similarity=0.180 Sum_probs=148.4
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC-CCcEEEeccHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK-KEDCLLCPTGFAAN 178 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g-~e~alv~~sG~~An 178 (334)
+|.+||+||||.++ ..||. +||+|++|+++. ..+.. .........++++++.++.+ .+.+++++||++||
T Consensus 47 ~D~~G~~ylD~~~~~~~~~lGh-~hp~i~~ai~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~ 121 (427)
T d2gsaa_ 47 WDVDGNRYIDYVGTWGPAICGH-AHPEVIEALKVAMEKGTS----FGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEAC 121 (427)
T ss_dssp EETTSCEEEESSGGGTTTTTCB-TCHHHHHHHHHHHTTCSC----CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHH
T ss_pred EECCCCEEEEechhHHHHhccC-CcHHHHHHHHHHHHhcCc----cccchhHHHHHHHHHHhhCCccccccccCCcHHHH
Confidence 56778999999875 45788 599999988653 33321 22234666788888888765 45677889999999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHh-----hhc----------CCcEEEEeeCCCHHHHH
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIA-----ERT----------KMVEVFVYKHCDMSHLK 243 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls-----~~~----------~g~~v~~~~~~D~~~Le 243 (334)
..+++....- +++..+|..+..+|+.....+.++ ... ...+...++++|+++||
T Consensus 122 e~Alk~ar~~-----------t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le 190 (427)
T d2gsaa_ 122 MAVLRLMRAY-----------TGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVK 190 (427)
T ss_dssp HHHHHHHHHH-----------HCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHH
T ss_pred HHHHHHHHHh-----------cCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHH
Confidence 9999865432 245677778888997643221111 000 01345678899999999
Q ss_pred HHHhcCCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEe
Q 019931 244 TLLSCCTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVG 318 (334)
Q Consensus 244 ~~l~~~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~ 318 (334)
+++++.+.+...|++|++.++.|.+.| |++|+++|++||++||+||+|+ | + ++|.++ .+++++.| ||+
T Consensus 191 ~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~t-G-~-r~g~~~~~~~~gi~P--Di~-- 263 (427)
T d2gsaa_ 191 ALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMT-G-F-RIAYGGVQEKFGVTP--DLT-- 263 (427)
T ss_dssp HHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-B-T-TTBTTCHHHHTTCCC--SEE--
T ss_pred HHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccc-c-c-eecccchHHhcCCCH--HHH--
Confidence 999876667889999999999998887 9999999999999999999997 5 3 446554 57899988 555
Q ss_pred cCcccccC
Q 019931 319 TLSKAAGC 326 (334)
Q Consensus 319 SlsKa~G~ 326 (334)
+++|++|.
T Consensus 264 ~~gK~lgg 271 (427)
T d2gsaa_ 264 TLGKIIGG 271 (427)
T ss_dssp EECGGGGT
T ss_pred hhhhccCC
Confidence 79999964
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.86 E-value=9.3e-22 Score=187.52 Aligned_cols=220 Identities=19% Similarity=0.211 Sum_probs=166.1
Q ss_pred hhHHHHHHHHHHHHHHccccccccccccCCCCccccccCCCCCCCCcchhcccccccccceeeeechhhhhhhhcccCCC
Q 019931 5 SLWDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQISISDSTFQRWLHDVPSS 84 (334)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (334)
|+.....|+++.++.+++..||...|++++++
T Consensus 1 ~~~l~~~D~ei~~~i~~e~~rq~~~l~LiaSE------------------------------------------------ 32 (405)
T d1kl1a_ 1 MKYLPQQDPQVFAAIEQERKRQHAKIELIASE------------------------------------------------ 32 (405)
T ss_dssp CCHHHHHCHHHHHHHHHHHHHHHHSEECCTTC------------------------------------------------
T ss_pred CchhhhhCHHHHHHHHHHHHHHHcCceEeccC------------------------------------------------
Confidence 34556789999999999999999999999887
Q ss_pred CCCcceeecCCCCCcccchhcccceeEEEeecCccCCCCCCHHHHHHH-----HHhcCCCCccccccCchHHHHHHH---
Q 019931 85 GDENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAKAA-----ARHGMGPRGSALICGYTNYHRLLE--- 156 (334)
Q Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~g~~~l~f~sn~yLgl~~~p~v~~a~-----~~~g~g~~~sr~~~G~~~~~~~LE--- 156 (334)
|+.| |.|+++. .+|..|.++.|++.|+ ...+++|
T Consensus 33 ----------------------------N~~S---------~~v~~a~~S~l~nkyaeG~pg~ryy~G~-~~id~iE~la 74 (405)
T d1kl1a_ 33 ----------------------------NFVS---------RAVMEAQGSVLTNKYAEGYPGRRYYGGC-EYVDIVEELA 74 (405)
T ss_dssp ----------------------------CCCC---------HHHHHHHTSGGGGCCCCEETTEESSSCC-HHHHHHHHHH
T ss_pred ----------------------------CcCC---------HHHHHHhcCcccCcCcCCCCCccccCCc-hhHHHHHHHH
Confidence 4444 6666643 5788998898988886 5557777
Q ss_pred -HHHHhHhCCCcEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchh-hHHHHHHhhhcCCcEEEE
Q 019931 157 -SCLADLKKKEDCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHAS-IIDGIRIAERTKMVEVFV 233 (334)
Q Consensus 157 -~~La~~~g~e~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s-~~~g~~ls~~~~g~~v~~ 233 (334)
++..++|+++.+-+. .||+.||++++.+|++| ||.|+...+.|+. +.++..........+++.
T Consensus 75 ~~ra~~lF~a~~anVqp~SGs~An~av~~all~p--------------GD~im~l~l~~GGHlshg~~~~~~g~~~~~~~ 140 (405)
T d1kl1a_ 75 RERAKQLFGAEHANVQPHSGAQANMAVYFTVLEH--------------GDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVA 140 (405)
T ss_dssp HHHHHHHHCCSEEECCCSSHHHHHHHHHHHHCCT--------------TCEEEEECGGGTCCGGGTCTTSHHHHHSEEEE
T ss_pred HHHHHHHhCCCcceeeccCchHHHHHHHHHhcCC--------------CCEEEEeecccccccccCccccccceEEEEEE
Confidence 445668999999887 79999999999999986 8889877654433 112211111111456677
Q ss_pred eeCC------CHHHHHHHHhcCCCCcEEE-EEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccc
Q 019931 234 YKHC------DMSHLKTLLSCCTMRKKVV-VTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQ 306 (334)
Q Consensus 234 ~~~~------D~~~Le~~l~~~~~~~~lV-v~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~ 306 (334)
|+.+ |++++++++++. ++++| +..+.|+. ..|+++++++|++.|++|++|.+|..|++- .|. +
T Consensus 141 y~~d~~~~~ID~d~l~~~a~~~--kPklIi~G~S~y~r---~~d~~~~reIad~vga~l~~D~aH~~GLIa---~g~--~ 210 (405)
T d1kl1a_ 141 YGVDPETHVIDYDDVREKARLH--RPKLIVAAASAYPR---IIDFAKFREIADEVGAYLMVDMAHIAGLVA---AGL--H 210 (405)
T ss_dssp ECBCTTTCSBCHHHHHHHHHHH--CCSEEEECCSSCCS---CCCHHHHHHHHHHHTCEEEEECTTTHHHHH---TTS--S
T ss_pred eccchhcccccHHHHHHHHHhh--CcceEEeccccccc---ccChHHHHHHHhhhCCEEecchhhHhhhhh---hhh--c
Confidence 7642 999999999875 45555 45555554 778999999999999999999999999873 233 3
Q ss_pred cCCCCCccEEEecCcccc-cCCccEEeeC
Q 019931 307 FNCERDVDICVGTLSKAA-GCQGGFIACR 334 (334)
Q Consensus 307 ~~~~~~~Div~~SlsKa~-G~~GG~i~~~ 334 (334)
.++.+.+||+++|++|+| |+.||+|+++
T Consensus 211 ~~P~~~aDvvt~tThKtlrGPrgg~I~~~ 239 (405)
T d1kl1a_ 211 PNPVPYAHFVTTTTHKTLRGPRGGMILCQ 239 (405)
T ss_dssp CCSTTTCSEEEEESSSTTCCCSCEEEEEC
T ss_pred CChhhhhhheeccccccccCCCCceEEec
Confidence 344578999999999999 7799999874
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=2.9e-20 Score=176.90 Aligned_cols=204 Identities=18% Similarity=0.176 Sum_probs=153.8
Q ss_pred ccceeEEEeecCccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHHHHH
Q 019931 106 RQFKRLLLFSGNDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAANMA 180 (334)
Q Consensus 106 ~~g~~~l~f~sn~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~An~~ 180 (334)
.+|+++|+|+.++ .++..+|.|++++.++ ..+..+|....|..++.+++.+.+.+..+ .+++++++++.+|+..
T Consensus 28 ~~G~~vi~l~~g~-p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~ 106 (382)
T d1b5pa_ 28 RQGVDLVALTAGE-PDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFN 106 (382)
T ss_dssp HTTCCCEECCCSS-CSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHH
T ss_pred hCCCCeEECCCCC-CCCCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHH
Confidence 3358999999988 5788899999987653 44555555566776666666666555444 3578888888999999
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCCc
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMRK 253 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~~ 253 (334)
++.+++++ ||.|+++.+.+..+...++.. |.+++.++.. |+++++++++ +++
T Consensus 107 ~~~~l~~~--------------gd~vl~~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~ 165 (382)
T d1b5pa_ 107 LFQAILDP--------------GDEVIVLSPYWVSYPEMVRFA----GGVVVEVETLPEEGFVPDPERVRRAIT---PRT 165 (382)
T ss_dssp HHHHHCCT--------------TCEEEEEESCCTHHHHHHHHT----TCEEEEEECCGGGTTCCCHHHHHTTCC---TTE
T ss_pred HHHHhCCC--------------CCEEEECCCCcHHHHHHHHHh----cCeEEEEecccccccCCCHHHHHHhCC---CCC
Confidence 99998875 788888888888887777777 7888887642 6677766554 478
Q ss_pred EEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc--
Q 019931 254 KVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG-- 328 (334)
Q Consensus 254 ~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G-- 328 (334)
++|++.+++||+|.+.+ +++|+++|++||+++|.||+|+...+.. ..... ....++..|+++||||+|+..|
T Consensus 166 ~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~--~~~~~-~~~~~~~~i~~~s~SK~~~~~GlR 242 (382)
T d1b5pa_ 166 KALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG--EHFSP-GRVAPEHTLTVNGAAKAFAMTGWR 242 (382)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS--CCCCG-GGTCTTTEEEEEESTTTTTCGGGC
T ss_pred eEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCC--CCCCH-HHcCCCCEEEEecchhhccCcHhh
Confidence 89999999999999877 7789999999999999999999765532 22211 1122344689999999999777
Q ss_pred -cEEeeC
Q 019931 329 -GFIACR 334 (334)
Q Consensus 329 -G~i~~~ 334 (334)
||++++
T Consensus 243 ~G~~~~~ 249 (382)
T d1b5pa_ 243 IGYACGP 249 (382)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 998764
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.85 E-value=3.1e-20 Score=176.41 Aligned_cols=204 Identities=13% Similarity=0.135 Sum_probs=151.0
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC-----CCcEEEeccHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK-----KEDCLLCPTGFAANMAVI 182 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g-----~e~alv~~sG~~An~~ai 182 (334)
+++|||+.++ .++..++.|++++.+. ..+..+|....|..++.+++.+.+.+..+ .+.+++++++.+++..++
T Consensus 25 ~dvi~l~~g~-p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~ 103 (388)
T d1gdea_ 25 KDVISLGIGE-PDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGL 103 (388)
T ss_dssp TTCEECCCCS-CCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHH
T ss_pred CCeEECCCCC-CCCCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHH
Confidence 6789999887 5788899999977543 33444454555665555555555544333 245778888899999998
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCCcEE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMRKKV 255 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~~~l 255 (334)
.+++.+ ||.|++..+.|..+...++.. |.+++.++.. |+++|++.+++ ++++
T Consensus 104 ~~l~~~--------------gd~vlv~~P~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~ 162 (388)
T d1gdea_ 104 SAFLKD--------------GEEVLIPTPAFVSYAPAVILA----GGKPVEVPTYEEDEFRLNVDELKKYVTD---KTRA 162 (388)
T ss_dssp TTTCCT--------------TCEEEEEESCCTTHHHHHHHH----TCEEEEEECCGGGTTCCCHHHHHHHCCT---TEEE
T ss_pred HHhcCC--------------CCEEEECCCCcHHHHHHHHHc----CCEEEEeecccccCCCCCHHHHHHhCcc---CCeE
Confidence 888765 788998888988888888877 8888888752 78888887764 7889
Q ss_pred EEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---c
Q 019931 256 VVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---G 329 (334)
Q Consensus 256 Vv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G 329 (334)
|++.+++||+|.+.+ +++|+++|++|+++||+||+|...+++.........+....+..|+++||||+||..| |
T Consensus 163 i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G 242 (388)
T d1gdea_ 163 LIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLG 242 (388)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCE
T ss_pred EEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEE
Confidence 999999999999876 7788999999999999999999765543222221112212233589999999998777 8
Q ss_pred EEeeC
Q 019931 330 FIACR 334 (334)
Q Consensus 330 ~i~~~ 334 (334)
|++++
T Consensus 243 ~ii~~ 247 (388)
T d1gdea_ 243 FVAAP 247 (388)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 98764
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.85 E-value=1.2e-21 Score=186.21 Aligned_cols=185 Identities=17% Similarity=0.179 Sum_probs=140.2
Q ss_pred CccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhC---CCcEEEeccHHHHHHHHHHHHhhhhhhcc
Q 019931 117 NDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKK---KEDCLLCPTGFAANMAVIVAVGNIASLLA 193 (334)
Q Consensus 117 n~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g---~e~alv~~sG~~An~~ai~al~~~~~~~~ 193 (334)
+||+|+..++.+.++..+...... |......++++..++.++ .+.++++++|++|+++++.++..
T Consensus 23 ~~~~gl~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~~------ 90 (366)
T d2aeua1 23 YDLSGLSGGFLIDEKDKALLNTYI------GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKP------ 90 (366)
T ss_dssp EECSSCCCCCCCCHHHHHHHTSTT------HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHCC------
T ss_pred hhhccCCCCCCccHHHHHHHHHhc------CchhhHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhCC------
Confidence 367788877766665544433322 122344677777777665 35689999999999999998753
Q ss_pred CCCccCCCCCeEEEE-cCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCC-CCCccCH
Q 019931 194 GDEKSFKDEKIAIFS-DALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSM-DGDFAPM 271 (334)
Q Consensus 194 ~~~~~~~~~gd~Vl~-d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~-~G~~~pL 271 (334)
++++|+. +.++|+++..+++++ ++++ ++++|+++|++.+++ +|++|++++++|+ .+++.+|
T Consensus 91 --------~~~vi~~~~~~~~~~~~~~~~l~----g~~~--v~~~d~e~l~~~i~~---~tk~i~~~~p~n~~~~~~~~l 153 (366)
T d2aeua1 91 --------KKVIHYLPELPGHPSIERSCKIV----NAKY--FESDKVGEILNKIDK---DTLVIITGSTMDLKVIELENF 153 (366)
T ss_dssp --------SEEEEECSSSSCCTHHHHHHHHT----TCEE--EEESCHHHHHTTCCT---TEEEEEECBCTTSCBCCHHHH
T ss_pred --------CCEEEEecCCCcchhHHHHHHhc----CCeE--ECCCCHHHHHHhcCC---CceEEEEEecCCCCcCCHHHH
Confidence 2666665 568999999999998 7764 567899998888764 8999999999886 5578899
Q ss_pred HHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC-CccEEeeC
Q 019931 272 VELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC-QGGFIACR 334 (334)
Q Consensus 272 ~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~-~GG~i~~~ 334 (334)
++|+++|++||+++++||+|+.++++..+.+.... .++||+++|+||++++ .+||++++
T Consensus 154 ~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~----~~~di~~~S~sK~~~g~~~G~i~~~ 213 (366)
T d2aeua1 154 KKVINTAKNKEAIVFVDDASGARVRLLFNQPPALK----LGADLVVTSTDKLMEGPRGGLLAGK 213 (366)
T ss_dssp HHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHH----HTCSEEEEETTSSSSSCSCEEEEEE
T ss_pred HHHHHHhccCcEEEEEecCccccccccccCCCHhh----cCceEEEecccccccccceeEEEec
Confidence 99999999999999999999998876544443222 3468999999999965 66999874
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.84 E-value=4.9e-20 Score=176.66 Aligned_cols=160 Identities=18% Similarity=0.165 Sum_probs=133.9
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.|..+.||++|+++.|.+.+++|+||++|+.+++.+++++ ||.|++....+.....-+.......|
T Consensus 62 nPT~~~LE~~la~LEgg~~a~~~sSGmaAi~~~l~~ll~~--------------Gd~vi~~~~~Yg~t~~~~~~~l~~~G 127 (397)
T d1y4ia1 62 NPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQ--------------GDHIVSASAIYGCTHAFLSHSMPKFG 127 (397)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCT--------------TCEEEEESSSCHHHHHHHHTHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCccceeehHHHHHHHHHHhhccCC--------------CCeeeeecccccccchhhhcccCCCc
Confidence 4888999999999999999999999999999999998876 66666665555555544432223348
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
.++..++..|.+.+++++++ +|++|++|+|.||+..+.|+++|+++|+++|++++||...+..++ ..+
T Consensus 128 i~~~~vd~~d~~~~~~~i~~---~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~---------~~P 195 (397)
T d1y4ia1 128 INVRFVDAGKPEEIRAAMRP---ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYC---------QQP 195 (397)
T ss_dssp CEEEEECTTSHHHHHHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT---------CCG
T ss_pred eEeeccCCCCHHHHHHhcCC---CCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCccc---------Ccc
Confidence 99999999999999999864 899999999999999999999999999999999999999887654 223
Q ss_pred CCCCccEEEecCcccccC----CccEEeeC
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIACR 334 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~~ 334 (334)
+..++||++.|++|.+|+ .||+++++
T Consensus 196 l~~GaDivihS~TKyi~Ghsdvl~G~v~~~ 225 (397)
T d1y4ia1 196 LQLGADIVVHSVTKYINGHGDVIGGIIVGK 225 (397)
T ss_dssp GGGTCSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred hhcCCCEEEEehhhhcCCCcceeeeccCCC
Confidence 456789999999999986 56887764
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.84 E-value=7e-20 Score=174.92 Aligned_cols=206 Identities=12% Similarity=0.125 Sum_probs=152.9
Q ss_pred cceeEEEeecCccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC----CcEEEeccHHHHHHHH
Q 019931 107 QFKRLLLFSGNDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK----EDCLLCPTGFAANMAV 181 (334)
Q Consensus 107 ~g~~~l~f~sn~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~----e~alv~~sG~~An~~a 181 (334)
.|+++|||+.++ .++..+|.+++++++. ..+..+|....|..++.+.+.+.+.+..|. +++++++++++|+..+
T Consensus 28 ~g~~vi~l~~G~-p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 106 (388)
T d1j32a_ 28 EGIDVCSFSAGE-PDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNL 106 (388)
T ss_dssp TTCCCEECCCSS-CSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHH
T ss_pred CCCCeEECCCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHH
Confidence 358999999987 5788899999987653 234444555667666666676666666653 4678888889999999
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCCCCcE
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~~~~~ 254 (334)
+.+++++ ||.|++..+.+..+...+... +.+++.++. .|+++|++.+++ +++
T Consensus 107 ~~~~~~~--------------gd~Vlv~~P~y~~~~~~~~~~----~~~~v~~~~~~~~~~~~d~~~l~~~~~~---~~~ 165 (388)
T d1j32a_ 107 MLAMIEP--------------GDEVIIPAPFWVSYPEMVKLA----EGTPVILPTTVETQFKVSPEQIRQAITP---KTK 165 (388)
T ss_dssp HHHHCCT--------------TCEEEEESSCCTHHHHHHHHT----TCEEEEECCCGGGTTCCCHHHHHHHCCT---TEE
T ss_pred HHHHhCC--------------CCEEEEcCCCcHHHHHHHHHh----cCeEEEEecccccccCCCHHHHHHhCCC---CCe
Confidence 9988875 888998888888887777766 677777764 278888887764 788
Q ss_pred EEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcc-cccccCCCCCccEEEecCcccccCCc--
Q 019931 255 VVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG-VAEQFNCERDVDICVGTLSKAAGCQG-- 328 (334)
Q Consensus 255 lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g-~~~~~~~~~~~Div~~SlsKa~G~~G-- 328 (334)
+|++.+++||+|.+.+ +++|+++|+++|++||+||+|....++....- +........+..|++.||||.||..|
T Consensus 166 ~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlR 245 (388)
T d1j32a_ 166 LLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWR 245 (388)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTC
T ss_pred EEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhH
Confidence 9999999999999877 67788899999999999999987655432111 11100000123588999999999777
Q ss_pred -cEEeeC
Q 019931 329 -GFIACR 334 (334)
Q Consensus 329 -G~i~~~ 334 (334)
||++++
T Consensus 246 vG~~~~~ 252 (388)
T d1j32a_ 246 VGFLAGP 252 (388)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 998864
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=2.5e-20 Score=178.59 Aligned_cols=159 Identities=18% Similarity=0.158 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEE-EcCCCchhhHHHHHHhhhcC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIF-SDALNHASIIDGIRIAERTK 227 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl-~d~~~H~s~~~g~~ls~~~~ 227 (334)
.|..+.||++|+++.|.+.+++|+||+.|+.+++.+++++ ||.|+ .+..++.+ ..-+.......
T Consensus 58 nPT~~~LE~~la~LEg~~~a~~~~SGmaAi~~~l~~l~~~--------------Gd~vl~~~~~Yg~t-~~l~~~~~~~~ 122 (392)
T d1gc0a_ 58 NPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRP--------------GDEVLLGNTLYGCT-FAFLHHGIGEF 122 (392)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCT--------------TCEEEEESSCCSHH-HHHHHHTGGGG
T ss_pred ChHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHhhccC--------------CCeeecccccchhh-hhhhhhhhccC
Confidence 4788999999999999999999999999999999998876 55555 55555544 33333333344
Q ss_pred CcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCccccccc
Q 019931 228 MVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 228 g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
|.++..++..|++.+++++++ +|++|++|+|.||+..+.|+++|+++|+++|+++++|+..+.+++- .
T Consensus 123 Gi~~~~~d~~d~~~~~~ai~~---~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~---------~ 190 (392)
T d1gc0a_ 123 GVKLRHVDMADLQALEAAMTP---ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQ---------R 190 (392)
T ss_dssp TCEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHC---------C
T ss_pred CcccccCCccCHHHHHHhCCC---CCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCcccc---------C
Confidence 899999999999999999875 8999999999999999999999999999999999999999887542 2
Q ss_pred CCCCCccEEEecCcccccC----CccEEeeC
Q 019931 308 NCERDVDICVGTLSKAAGC----QGGFIACR 334 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~----~GG~i~~~ 334 (334)
++..++||++.|++|.+++ .||+++++
T Consensus 191 Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~ 221 (392)
T d1gc0a_ 191 PLELGADLVVHSATKYLSGHGDITAGIVVGS 221 (392)
T ss_dssp GGGGTCSEEEEETTTTTTCSSSCCCEEEEEC
T ss_pred hHHhCCCEEEEecceeecCCcccccccccch
Confidence 3455789999999999976 56777764
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.84 E-value=1.6e-19 Score=173.89 Aligned_cols=216 Identities=17% Similarity=0.140 Sum_probs=145.3
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHH-hcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAAR-HGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANM 179 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~-~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~ 179 (334)
+|.+|++||||.+. ..||. +||+|++|+++ .......++... ...+..+++.++++.+.+.+.+++||++|+.
T Consensus 34 ~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~ 110 (404)
T d1z7da1 34 YDVNDKRYYDFLSAYSSVNQGH-CHPNILNAMINQAKNLTICSRAFF--SVPLGICERYLTNLLGYDKVLMMNTGAEANE 110 (404)
T ss_dssp EETTCCEEEESSHHHHTTTTCB-TCHHHHHHHHHHHTTCSCCCTTSE--EHHHHHHHHHHHHHHTCSEEEEESSHHHHHH
T ss_pred EECCCCEEEEccccHHHHhhhc-CcHHHHHHHHHHHHhCCCcccccc--hHHHHHHHHhhhhccccceeeeeccccchHH
Confidence 46778999999774 44666 59999998754 333333333332 5677889999999999999999999999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc--------CCcEEEEeeCCCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT--------KMVEVFVYKHCDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~--------~g~~v~~~~~~D~~~Le~~l~~~~~ 251 (334)
.+++.....+... .........++.....+|............. ....+..++.++.+.++..+.. .
T Consensus 111 ~a~k~ar~~~~~~---~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~ 185 (404)
T d1z7da1 111 TAYKLCRKWGYEV---KKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKD--P 185 (404)
T ss_dssp HHHHHHHHHHHHT---SCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTS--T
T ss_pred HHHHHHHHHHhhc---ccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcC--C
Confidence 9998654332100 0001112345556667777654443332100 0123445567788888888764 3
Q ss_pred CcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEecCcccccC
Q 019931 252 RKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
+...|++|+++++.|.+.| |++|+++|++||++||+||+|+ | +|++|..+ .+++++.| ||+ |++|++|.
T Consensus 186 ~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~t-G-fgRtG~~~~~e~~gv~P--Div--t~gK~l~g 259 (404)
T d1z7da1 186 NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-G-LGRTGKLLCVHHYNVKP--DVI--LLGKALSG 259 (404)
T ss_dssp TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSGGGGGTCCC--SEE--EECGGGGT
T ss_pred CEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCcc-C-CCcccccccccccCCCC--CEE--EEcccccC
Confidence 6789999999999998877 9999999999999999999997 5 78888776 47899987 555 89999964
Q ss_pred ---CccEEee
Q 019931 327 ---QGGFIAC 333 (334)
Q Consensus 327 ---~GG~i~~ 333 (334)
..|++++
T Consensus 260 G~~p~~~v~~ 269 (404)
T d1z7da1 260 GHYPISAVLA 269 (404)
T ss_dssp TSSCCEEEEE
T ss_pred CCCCcccccc
Confidence 2355543
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=2.1e-19 Score=171.69 Aligned_cols=159 Identities=15% Similarity=0.122 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.|....||++|+++.|.+.+++|+||++|+..++.+++++ ||.|++....+.....-+.......+
T Consensus 49 nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~~l~~l~~~--------------gd~vv~~~~~yg~t~~~~~~~~~~~g 114 (384)
T d1cs1a_ 49 NPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKP--------------GDLLVAPHDCYGGSYRLFDSLAKRGC 114 (384)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCT--------------TCEEEEETTCCHHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHhCCCceEEecChHHHHHHHHhhcccc--------------cceecccccccchhhhhhhhhhcccc
Confidence 4778999999999999999999999999999999988875 66666655555544443333323347
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
..+..+...|.+.+++.+++ +|++|++|+|.||+..+.|+++|+++|+++|+++|||+..+.+++ ..+
T Consensus 115 ~~~~~~d~~d~~~~~~~~~~---~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~---------~~P 182 (384)
T d1cs1a_ 115 YRVLFVDQGDEQALRAALAE---KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPAL---------QNP 182 (384)
T ss_dssp CEEEEECTTCHHHHHHHHHT---CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT---------CCG
T ss_pred cccccccCCCHHHHHhhccc---cccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCccc---------ccc
Confidence 78888889999999999885 899999999999999999999999999999999999999887654 123
Q ss_pred CCCCccEEEecCcccccC----CccEEee
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+..++||++.|++|.+++ .||++++
T Consensus 183 l~~GaDiVvhS~TKyi~Ghsdv~~G~vv~ 211 (384)
T d1cs1a_ 183 LALGADLVLHSCTKYLNGHSDVVAGVVIA 211 (384)
T ss_dssp GGGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred cccCCCEEEEccccccccCCCcccccccC
Confidence 456789999999999986 4577665
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.82 E-value=1.3e-19 Score=172.99 Aligned_cols=158 Identities=16% Similarity=0.118 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.|..+.||++|+++.|.+.+++|+||++|+. ++.+++++ ||.|++....|.....-+.......|
T Consensus 48 nPt~~~le~~la~LE~~~~a~~fsSGMaAis-all~ll~~--------------Gd~vv~~~~~Yg~t~~l~~~~~~~~g 112 (380)
T d1ibja_ 48 NPTRDALESLLAKLDKADRAFCFTSGMAALS-AVTHLIKN--------------GEEIVAGDDVYGGSDRLLSQVVPRSG 112 (380)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHH-HHHTTSCT--------------TCEEEEESSCCHHHHHHHHHTSGGGT
T ss_pred ChHHHHHHHHHHHHcCCceEEehhhHHHHHH-HHHHhhCC--------------CCEEEEEecccccccchhhhhhcccc
Confidence 4777999999999999999999999999975 45555554 67777776677776666554434458
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
.++..++..|++.+++++++ ++++|++|+|.||+..+.|+++|+++|+++|+++|||+..+.+++ ..+
T Consensus 113 i~~~~~d~~~~~~~~~ai~~---~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~---------~~P 180 (380)
T d1ibja_ 113 VVVKRVNTTKLDEVAAAIGP---QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVL---------SRP 180 (380)
T ss_dssp CEEEEECTTSHHHHHHHCCS---SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTT---------CCG
T ss_pred ccccccCcchHHHHHHHhcc---CccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccccccc---------ccc
Confidence 88888998999999998864 899999999999999999999999999999999999999987653 224
Q ss_pred CCCCccEEEecCcccccC----CccEEee
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+..++||++.|++|.+++ .||++++
T Consensus 181 l~~GaDiVvhS~TKyi~GhsDv~~G~v~~ 209 (380)
T d1ibja_ 181 LELGADIVMHSATKFIAGHSDVMAGVLAV 209 (380)
T ss_dssp GGTTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred cccCCCEEEecccceeccccCcccccccc
Confidence 456799999999999987 4577654
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.82 E-value=5.9e-19 Score=169.21 Aligned_cols=160 Identities=18% Similarity=0.124 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.|..+.||++|+++.|.+.+++|+||++|+.+++.+++++ ||.|++....++....-+.......+
T Consensus 66 nPt~~~LE~~la~LEgg~~a~~~sSGMaAi~~~l~~l~~~--------------Gd~iv~~~~~Yg~t~~l~~~~~~~~g 131 (398)
T d1qgna_ 66 NPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPA--------------GGHIVTTTDCYRKTRIFIETILPKMG 131 (398)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCS--------------SCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred ChHHHHHHHHHHHHhCCceEEEecCcchHHHHHHhhcccc--------------cccccccccccchhhhhhcccccccc
Confidence 5888999999999999999999999999999999988865 66666555544554444443333447
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN 308 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~ 308 (334)
.++..++..|.+..++.+.. +++++|++|+|.||+..++|+++|+++|+++|+++|||+..+.+++ ..+
T Consensus 132 i~~~~~~~~~~~~~~~~~~~--~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~---------~~P 200 (398)
T d1qgna_ 132 ITATVIDPADVGALELALNQ--KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN---------QKA 200 (398)
T ss_dssp CEEEEECSSCHHHHHHHHHH--SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT---------CCT
T ss_pred cccccccccchhhhhhhhcc--ccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeecccc---------CCc
Confidence 88888887777766654433 3899999999999999999999999999999999999999887654 234
Q ss_pred CCCCccEEEecCcccccC----CccEEee
Q 019931 309 CERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 309 ~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
+..++||++.|++|.+|+ .||.+++
T Consensus 201 l~~GaDiVihS~TKy~~Ghsdv~~G~v~~ 229 (398)
T d1qgna_ 201 LALGADLVLHSATKFLGGHNDVLAGCISG 229 (398)
T ss_dssp TTTTCSEEEECTTTTTTCSSSCCCEEEEE
T ss_pred hhhCCCEEEEechhhcCcccceeehhhcc
Confidence 556799999999999987 4577665
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=7.3e-19 Score=170.29 Aligned_cols=204 Identities=17% Similarity=0.163 Sum_probs=141.6
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC---CcEEEeccHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK---EDCLLCPTGFA 176 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~---e~alv~~sG~~ 176 (334)
+|.+|++||||+++ ..||. +||+|++|+++. ..+...+... ..++...+|.++|.++... +.+++++||++
T Consensus 35 ~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~ai~~q~~~~~~~~~~~-~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGse 112 (425)
T d1sffa_ 35 WDVEGREYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKLSHTCFQV-LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSE 112 (425)
T ss_dssp EETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHTTTCSCCCTTT-EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHH
T ss_pred EeCCCCEEEEcCcCHHhhcccC-CcHHHHHHHHHHHhhcCCccccc-ccCcHHHHHHHHHHhhhhhcccceeeeeccccc
Confidence 56778999999884 45676 699999988654 3333222222 2256668899999998853 45777799999
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC---------CcEE--EEeeCC--------
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK---------MVEV--FVYKHC-------- 237 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~---------g~~v--~~~~~~-------- 237 (334)
|++.+++..... +++..+|..+..+|+.......++.... .... ..++..
T Consensus 113 A~e~Alk~ar~~-----------t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (425)
T d1sffa_ 113 AVENAVKIARAA-----------TKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDD 181 (425)
T ss_dssp HHHHHHHHHHHH-----------HTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHH
T ss_pred hhhhHHHHhhhh-----------hcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchh
Confidence 999999965432 3457778888999998876666552110 0111 111111
Q ss_pred CHHHHHHHHhcC--CCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCC
Q 019931 238 DMSHLKTLLSCC--TMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCE 310 (334)
Q Consensus 238 D~~~Le~~l~~~--~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~ 310 (334)
....+++++... ..+...|++|++.+..|.+.| |++|+++|++||++||+||+++ | +|++|.+++ +++++.
T Consensus 182 ~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~t-G-~gR~g~~~a~~~~gv~ 259 (425)
T d1sffa_ 182 AIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-G-AGRTGTLFAMEQMGVA 259 (425)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSGGGGTTSC
T ss_pred hHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccc-c-CCCcchhhHHHhcCCC
Confidence 111223332211 235688999999998887665 8999999999999999999999 4 688887764 789998
Q ss_pred CCccEEEecCcccccC
Q 019931 311 RDVDICVGTLSKAAGC 326 (334)
Q Consensus 311 ~~~Div~~SlsKa~G~ 326 (334)
| ||+ |++|++|.
T Consensus 260 P--Di~--~~gK~l~g 271 (425)
T d1sffa_ 260 P--DLT--TFAKSIAG 271 (425)
T ss_dssp C--SEE--EECGGGGT
T ss_pred c--cce--ecccccCC
Confidence 7 555 89999974
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.80 E-value=2.6e-19 Score=173.66 Aligned_cols=203 Identities=20% Similarity=0.161 Sum_probs=141.7
Q ss_pred hcccceeEEEeec---CccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHh--CCCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSG---NDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLK--KKEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~s---n~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~--g~e~alv~~sG~~A 177 (334)
+|.+|++||||.+ +..||. +||+|.+|+++. .......... .++...+|.++|+++. +.+++++++||++|
T Consensus 36 ~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~~~--~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA 112 (431)
T d1zoda1 36 YDADGRAILDFTSGQMSAVLGH-CHPEIVSVIGEYAGKLDHLFSEM--LSRPVVDLATRLANITPPGLDRALLLSTGAES 112 (431)
T ss_dssp ECTTCCEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCCTTC--CCHHHHHHHHHHHHHSCTTCCEEEEESCHHHH
T ss_pred EECCCCEEEEcccCHHhhhhcC-CCHHHHHHHHHHHhhcccccccc--ccHHHHHHHHHHHHhCCcccceeeecccccch
Confidence 4677899999977 355787 589999977543 2222111112 2466678999999987 46788889999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC---------CcEEEEeeC------------
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK---------MVEVFVYKH------------ 236 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~---------g~~v~~~~~------------ 236 (334)
++.+++.... .+++..++..+..+|+.....+.++.... +...+.+++
T Consensus 113 ~e~Alk~Ar~-----------~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (431)
T d1zoda1 113 NEAAIRMAKL-----------VTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAY 181 (431)
T ss_dssp HHHHHHHHHH-----------HHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEE
T ss_pred HHHHHHHHHH-----------hcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccch
Confidence 9999996443 23467778889999998766554432110 111111111
Q ss_pred CC---HHHHHHHHhc-CCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-ccc
Q 019931 237 CD---MSHLKTLLSC-CTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQF 307 (334)
Q Consensus 237 ~D---~~~Le~~l~~-~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~ 307 (334)
.+ .+.++.++.+ ...+...|++|++....|.+.| +++|+++|++||++||+||+++ | +|++|.+++ +++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~t-G-~gRtG~~~~~~~~ 259 (431)
T d1zoda1 182 DYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT-G-VGRTGTMFACQRD 259 (431)
T ss_dssp CHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSTHHHH
T ss_pred hhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccc-c-ccccccccccccC
Confidence 12 2333333332 2346789999999998887765 9999999999999999999999 4 788888764 688
Q ss_pred CCCCCccEEEecCcccccC
Q 019931 308 NCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~ 326 (334)
++.|| |+ +++|++|+
T Consensus 260 gv~PD--i~--~~gK~l~g 274 (431)
T d1zoda1 260 GVTPD--IL--TLSKTLGA 274 (431)
T ss_dssp TCCCS--EE--EECHHHHT
T ss_pred CCCcc--hh--cccccccc
Confidence 99885 55 89999964
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=1.9e-18 Score=166.60 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.|..+.||++|+++.|.+.+++|+||++|+.+++.+++++ ||.|++....++.+..-+.....+.+
T Consensus 57 nPT~~~LE~~la~LE~~~~a~~~~SGmaAi~~~~~~l~~~--------------gd~il~~~~~Yg~t~~l~~~~~~~~g 122 (421)
T d2ctza1 57 NPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLAQA--------------GDNIVSTPNLYGGTFNQFKVTLKRLG 122 (421)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCT--------------TCEEEECSCCCHHHHHHHHTHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhhccc--------------ccceeecCCcCCchhHHHHHHHhhcc
Confidence 5888999999999999999999999999999999998875 66666655555554444443323448
Q ss_pred cEEEEeeCCCH-HHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcc-cccccCCCcccccc
Q 019931 229 VEVFVYKHCDM-SHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHG-TFVCGKNGGGVAEQ 306 (334)
Q Consensus 229 ~~v~~~~~~D~-~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~-~Gv~G~~G~g~~~~ 306 (334)
.++..++..|. +..+++++ ++|++|++|+|.||+..+.|+++|+++|+++|+++|||+..+ .+++ .
T Consensus 123 i~~~~~d~~~~~~~~~~~~~---~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~---------~ 190 (421)
T d2ctza1 123 IEVRFTSREERPEEFLALTD---EKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL---------L 190 (421)
T ss_dssp CEEEECCTTCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS---------C
T ss_pred ccceecccccCcchhccccC---CCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEeccccccccee---------c
Confidence 88888876554 44455554 389999999999999999999999999999999999999886 3432 2
Q ss_pred cCCCCCccEEEecCcccccC----CccEEee
Q 019931 307 FNCERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 307 ~~~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
.++..++||++.|++|.+|+ .||+|++
T Consensus 191 ~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~ 221 (421)
T d2ctza1 191 RPLAWGAALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp CGGGGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred cccccCCcEEEEechhhccCCCCeEEEEEEc
Confidence 34567899999999999987 4677764
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.79 E-value=3e-20 Score=180.18 Aligned_cols=217 Identities=20% Similarity=0.179 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHccccccccccccCCCCccccccCCCCCCCCcchhcccccccccceeeeechhhhhhhhcccCCCCC
Q 019931 7 WDKWVEEALSKLEALKVLRSLRPIYLSPNDRHHRVRNPGHVGEDYEVFDEMQHWDRNAVQISISDSTFQRWLHDVPSSGD 86 (334)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 86 (334)
-.+..|+++.++.+++..||...|++++++
T Consensus 11 ~l~~~D~ei~~~i~~e~~rq~~~l~LIaSE-------------------------------------------------- 40 (470)
T d1rv3a_ 11 PLKDSDAEVYDIIKKESNRQRVGLELIASE-------------------------------------------------- 40 (470)
T ss_dssp CHHHHCHHHHHHHHHHHHHHHSSEECCTTC--------------------------------------------------
T ss_pred hHhhhCHHHHHHHHHHHHHHHcCceEecCC--------------------------------------------------
Confidence 346789999999999999999999999887
Q ss_pred CcceeecCCCCCcccchhcccceeEEEeecCccCCCCCCHHHHHH-----HHHhcCCCCccccccCchHHHHHHHHHH--
Q 019931 87 ENEIICGDGLANDKTITFARQFKRLLLFSGNDYLGLSSHPTIAKA-----AARHGMGPRGSALICGYTNYHRLLESCL-- 159 (334)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~~~l~f~sn~yLgl~~~p~v~~a-----~~~~g~g~~~sr~~~G~~~~~~~LE~~L-- 159 (334)
|+. +|.|+++ ..+|..|.++.|++.|+ ...+++|...
T Consensus 41 --------------------------N~~---------S~~v~~algS~l~nkYaeG~pg~Ryy~G~-~~iD~iE~la~~ 84 (470)
T d1rv3a_ 41 --------------------------NFA---------SRAVLEALGSCLNNKYSLGYPGQRYYGGT-EHIDELETLCQK 84 (470)
T ss_dssp --------------------------CCC---------CHHHHHHHTSGGGTCCCCEETTEESSSCC-HHHHHHHHHHHH
T ss_pred --------------------------CcC---------CHHHHHHhcchhcccccCCCCCccccCCc-hhHHHHHHHHHH
Confidence 333 3444443 35788898899988886 4557877555
Q ss_pred --HhHhCCC----cEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchh-hHHHH-----HHhhhc
Q 019931 160 --ADLKKKE----DCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHAS-IIDGI-----RIAERT 226 (334)
Q Consensus 160 --a~~~g~e----~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s-~~~g~-----~ls~~~ 226 (334)
.++|+.+ .|-+. .||+.||++++.++++| ||.|+...+.|+. +.++. ..+...
T Consensus 85 ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~p--------------gD~im~~~l~~GGHlshg~~~~~~~~~~~~ 150 (470)
T d1rv3a_ 85 RALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEP--------------HGRIMGLDLPDGGHLTHGFMTDKKKISATS 150 (470)
T ss_dssp HHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCT--------------TCEEEEECGGGTCCGGGCCBCSSCBCSHHH
T ss_pred HHHHHhCCChhhccccccccCCccHHHHHHHHhcCC--------------CCeEeeeccccCCcccccccccCCCccccc
Confidence 6688876 56666 79999999999999986 8889887654443 22221 110000
Q ss_pred CCcEEEEeeC------CCHHHHHHHHhcCCCCcEEE-EEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCC
Q 019931 227 KMVEVFVYKH------CDMSHLKTLLSCCTMRKKVV-VTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKN 299 (334)
Q Consensus 227 ~g~~v~~~~~------~D~~~Le~~l~~~~~~~~lV-v~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~ 299 (334)
...+.+.|+. -|++++++++++. ++++| +-.+.|+. ..|+++++++|++.|++|++|.+|..|++-
T Consensus 151 ~~~~~~~y~v~~~~~~IDyd~l~~~a~~~--kPklIi~G~S~y~r---~~d~~~~reIad~vga~l~~D~aH~aGLIA-- 223 (470)
T d1rv3a_ 151 IFFESMAYKVNPDTGYIDYDRLEENARLF--HPKLIIAGTSCYSR---NLDYGRLRKIADENGAYLMADMAHISGLVV-- 223 (470)
T ss_dssp HHSEEEEECBCTTTCSBCHHHHHHHHHHH--CCSEEEECCSSCCS---CCCHHHHHHHHHHTTCEEEEECTTTHHHHH--
T ss_pred ceeEeeEEEEecccCcccHHHHHHHHHhh--CcceEeechhhccc---cCCHHHHHHHHhccCCeEEecchhhhhhcc--
Confidence 1245666653 2999999999875 45555 55566655 789999999999999999999999999762
Q ss_pred CcccccccCCCCCccEEEecCcccc-cCCccEEee
Q 019931 300 GGGVAEQFNCERDVDICVGTLSKAA-GCQGGFIAC 333 (334)
Q Consensus 300 G~g~~~~~~~~~~~Div~~SlsKa~-G~~GG~i~~ 333 (334)
.|. +.++.+.+||+++|++|+| |+.||+|++
T Consensus 224 -~g~--~~sPl~~aDvvt~tTHKtlrGPrgGiI~~ 255 (470)
T d1rv3a_ 224 -AGV--VPSPFEHCHVVTTTTHKTLRGCRAGMIFY 255 (470)
T ss_dssp -HTS--SCCGGGTCSEEEEESSGGGCCCSCEEEEE
T ss_pred -ccc--cCChhheeeeeeeehhhhccCCcceEEEE
Confidence 233 2334467899999999999 889999986
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=1e-18 Score=167.36 Aligned_cols=159 Identities=17% Similarity=0.118 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
+|..+.||++|+++.|.+.+++|+||++|+.+++.+++++ ||.|++....|..+..-+.-.....|
T Consensus 57 nPt~~~le~~la~LEg~~~a~~~~SGMaAi~~~l~~l~~~--------------Gd~iv~~~~~Yg~T~~l~~~~l~~~G 122 (391)
T d1cl1a_ 57 TLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQ--------------GDHVLMTNTAYEPSQDFCSKILSKLG 122 (391)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCT--------------TCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred ChhHHHHHHHHHHHhCCccEEEeccccceeeehhhcccCC--------------CCeEEEecccccchhhhhhhcccccc
Confidence 5888999999999999999999999999999999998875 66677666666666655553333458
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHc--CCEEEEecCcccccccCCCcccccc
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKY--GFLLVLDDAHGTFVCGKNGGGVAEQ 306 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~--ga~LivDeAh~~Gv~G~~G~g~~~~ 306 (334)
.++..++..|.+++++++++ ++++|++|++.||+..+.|+++|+++|+++ |+++|||+..+.+++ .
T Consensus 123 i~~~~~d~~d~~~~~~~i~~---~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~---------~ 190 (391)
T d1cl1a_ 123 VTTSWFDPLIGADIVKHLQP---NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL---------F 190 (391)
T ss_dssp CEEEEECTTCGGGGGGTCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTS---------S
T ss_pred cccccccCcccccccccccc---ccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhh---------h
Confidence 89999998999998887764 899999999999999999999999999775 999999999887654 1
Q ss_pred cCCCCCccEEEecCcccccC----CccEEee
Q 019931 307 FNCERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 307 ~~~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
.++..++||++.|++|.+++ .||.|++
T Consensus 191 ~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~ 221 (391)
T d1cl1a_ 191 KALDFGIDVSIQAATKYLVGHSDAMIGTAVC 221 (391)
T ss_dssp CGGGGTCSEEEEETTTTTTCSSSCCCEEEEE
T ss_pred cccccccceEEeecchhccccccccccceec
Confidence 23445789999999999976 5677765
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.79 E-value=2.4e-20 Score=180.46 Aligned_cols=176 Identities=19% Similarity=0.190 Sum_probs=109.9
Q ss_pred HHhcCCCCccccccCchHHHHHHH----HHHHhHhCCCcE----EEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCC
Q 019931 133 ARHGMGPRGSALICGYTNYHRLLE----SCLADLKKKEDC----LLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEK 203 (334)
Q Consensus 133 ~~~g~g~~~sr~~~G~~~~~~~LE----~~La~~~g~e~a----lv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~g 203 (334)
.+|..|.++.|++.|+ ...+++| ++..++|+++.+ -+. .||+.||++++.+|++| |
T Consensus 53 nkYaeG~pg~Ryy~G~-~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all~p--------------g 117 (463)
T d2a7va1 53 NKYSEGYPGKRYYGGA-EVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQP--------------H 117 (463)
T ss_dssp TCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCS--------------C
T ss_pred ccccCCCCCccccCCc-hhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHcCC--------------C
Confidence 5688898888888886 3335555 446678998875 444 79999999999999886 7
Q ss_pred eEEEEcCCCchh-hHHHH-----HHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEEEE-EcCCCCCCCCccC
Q 019931 204 IAIFSDALNHAS-IIDGI-----RIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKVVV-TDSLFSMDGDFAP 270 (334)
Q Consensus 204 d~Vl~d~~~H~s-~~~g~-----~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv-~e~v~n~~G~~~p 270 (334)
|.|+...+.|+. +.++. .++......+...|..+ |++.+++++++. ++++|+ -.+.|+. ..|
T Consensus 118 D~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~--kPklIi~G~S~y~r---~~d 192 (463)
T d2a7va1 118 DRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLF--RPRLIIAGTSAYAR---LID 192 (463)
T ss_dssp EECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHH--CCSEEEECCSSCCS---CCC
T ss_pred ceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhc--CCceEEeccccccc---ccC
Confidence 888866655433 22331 12211112334445322 999999999875 455554 5556655 789
Q ss_pred HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc-cCCccEEee
Q 019931 271 MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQGGFIAC 333 (334)
Q Consensus 271 L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~-G~~GG~i~~ 333 (334)
+++++++|++.|++|++|.+|..|++. .|. +.++.+.+||+++|++|+| |+.||+|++
T Consensus 193 ~~~~reIad~vga~l~~D~aH~aGLIA---~g~--~~sP~~~aDvvt~tTHKTlrGPrgGiIl~ 251 (463)
T d2a7va1 193 YARMREVCDEVKAHLLADMAHISGLVA---AKV--IPSPFKHADIVTTTTHKTLRGARSGLIFY 251 (463)
T ss_dssp HHHHHHHHHHTTCEEEEECGGGHHHHH---TTS--SCCGGGTCSEEEEESSGGGCSCSCEEEEE
T ss_pred HHHHHHHhhcccceEEechhhhhHHhh---hhh--hcChhhhhhhhhchhhhhhcCCCceEEEE
Confidence 999999999999999999999999873 233 2344467899999999999 789999987
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=5.1e-18 Score=160.30 Aligned_cols=206 Identities=15% Similarity=0.163 Sum_probs=147.9
Q ss_pred ccceeEEEeecCccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHHHHH
Q 019931 106 RQFKRLLLFSGNDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAANMA 180 (334)
Q Consensus 106 ~~g~~~l~f~sn~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~An~~ 180 (334)
..|+++|||+.++ .++..++.+++++.+. ..+..+|....|..++.+++.+.+.+..+ .+.+++++++++|+..
T Consensus 25 ~~G~~vI~l~~G~-p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~ 103 (375)
T d1o4sa_ 25 KKGEDVINLTAGE-PDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFN 103 (375)
T ss_dssp HTTCCCEECCCSS-CSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHH
T ss_pred HCCCCeEECCCcC-CCCCCCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHH
Confidence 3358899999887 4677789999987654 44555566667777777777777766655 3568888999999999
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCCc
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMRK 253 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~~ 253 (334)
++.+++++ ||.|++..+.+.......... +...+.++.. |.+.++.... .++
T Consensus 104 ~~~~l~~~--------------gd~vlv~~P~y~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 162 (375)
T d1o4sa_ 104 AFMALLDP--------------GDEVIVFSPVWVSYIPQIILA----GGTVNVVETFMSKNFQPSLEEVEGLLV---GKT 162 (375)
T ss_dssp HHHHHCCT--------------TCEEEEEESCCTTHHHHHHHT----TCEEEEEECCGGGTTCCCHHHHHHTCC---TTE
T ss_pred HHHHHhCC--------------CCEEEEccCccccchhhhhcc----ccccccccccccccccchhHHHHHhhc---cCc
Confidence 99999875 677777666666666555555 5666655432 4555544333 478
Q ss_pred EEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc--
Q 019931 254 KVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG-- 328 (334)
Q Consensus 254 ~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G-- 328 (334)
+++++.+++||+|.+.+ +++|+++|++|+++||.||+|....++..........+ ..+.-|+++||||.||..|
T Consensus 163 ~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~l~G~R 241 (375)
T d1o4sa_ 163 KAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSE-GFDRIVYINGFSKSHSMTGWR 241 (375)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCS-SSTTEEEEEESTTTTTCGGGC
T ss_pred cEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccC-CCCCEEEEeechhhccCCccc
Confidence 89999999999999877 67788999999999999999997655432222222122 2233589999999998766
Q ss_pred -cEEeeC
Q 019931 329 -GFIACR 334 (334)
Q Consensus 329 -G~i~~~ 334 (334)
||++++
T Consensus 242 ~G~~~~~ 248 (375)
T d1o4sa_ 242 VGYLISS 248 (375)
T ss_dssp CEEEECC
T ss_pred ccccccc
Confidence 888764
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.77 E-value=5.4e-18 Score=162.50 Aligned_cols=160 Identities=18% Similarity=0.137 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.|..+.||++|+++.|.+.+++|+||++|+.+++.+++++ ||.|++....+.....-+.......+
T Consensus 58 nPT~~~le~~la~LEg~~~a~~~sSGmaAi~~~~l~l~~~--------------gd~vv~~~~~yg~t~~~~~~~~~~~g 123 (394)
T d1e5ea_ 58 NPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKA--------------GDHLISDECLYGCTHALFEHALTKFG 123 (394)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCT--------------TCEEEEESCCCHHHHHHHHTHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCcceeeeccchHHHHHHHHhhccc--------------ccccccccceeehhhHhHHHHhhccc
Confidence 5888999999999999999999999999999999888875 67777665555555544443333458
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHH-HcCCEEEEecCcccccccCCCccccccc
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRR-KYGFLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~-k~ga~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
..+..++..|.+++++.+++ ++++|++|++.||+..+.|++++.++++ ++|+++|+|+..+.+++- .
T Consensus 124 i~~~~~d~~d~~~~~~~i~~---~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~---------~ 191 (394)
T d1e5ea_ 124 IQVDFINTAIPGEVKKHMKP---NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMIT---------N 191 (394)
T ss_dssp CEEEEECTTSTTHHHHHCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTC---------C
T ss_pred eeeeccCCCCHHHHHHhhcc---cccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCcccC---------C
Confidence 89999999999999999875 8999999999999999999999988666 578999999998876541 2
Q ss_pred CCCCCccEEEecCcccccC----CccEEeeC
Q 019931 308 NCERDVDICVGTLSKAAGC----QGGFIACR 334 (334)
Q Consensus 308 ~~~~~~Div~~SlsKa~G~----~GG~i~~~ 334 (334)
++..++||++.|++|.+++ .||+++++
T Consensus 192 Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~ 222 (394)
T d1e5ea_ 192 PVDFGVDVVVHSATKYINGHTDVVAGLICGK 222 (394)
T ss_dssp GGGGTCSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred chhcCCCEEEechhhhcCCCcccccccccch
Confidence 3445789999999999986 46777653
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.77 E-value=7.1e-18 Score=161.17 Aligned_cols=204 Identities=11% Similarity=0.088 Sum_probs=152.0
Q ss_pred ccceeEEEeecCcc--CCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC----CcEEEeccHHHHH
Q 019931 106 RQFKRLLLFSGNDY--LGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK----EDCLLCPTGFAAN 178 (334)
Q Consensus 106 ~~g~~~l~f~sn~y--Lgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~----e~alv~~sG~~An 178 (334)
.+|+++|+|+.++. .+|..++.+++++.+. ..+..+|....|..++.+.+.+.+.+.+|. +.+++++++.+++
T Consensus 27 ~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~ 106 (395)
T d1xi9a_ 27 KKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEAL 106 (395)
T ss_dssp HTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred HCCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhh
Confidence 34689999988753 5788889999977654 344455666777777777777777776664 4678888889999
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCCC
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCTM 251 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~~ 251 (334)
..++.+++.+ ||.|++..+.+..+...++.. |++++.++. .|++++++.+.+
T Consensus 107 ~~~~~~~~~~--------------Gd~vlv~~P~y~~~~~~~~~~----g~~~v~v~~~~~~~~~~d~~~~~~~~~~--- 165 (395)
T d1xi9a_ 107 QLIFGALLDP--------------GDEILVPGPSYPPYTGLVKFY----GGKPVEYRTIEEEDWQPDIDDIRKKITD--- 165 (395)
T ss_dssp HHHHHHHCCT--------------TCEEEEEESCCHHHHHHHHHT----TCEEEEEEEEGGGTSEECHHHHHHHCCT---
T ss_pred hhhhhhhcCC--------------CCEEEEcCCccccchhhhhhc----CCEEEEEeccccccccchHHHHHHhhcc---
Confidence 9999888765 788888888888877777777 788877753 267777776653
Q ss_pred CcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc
Q 019931 252 RKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G 328 (334)
++++|++.+++||+|.+.+ +++|+++|++|++++|.||+|...+++........ .. ....-|++.||||+|++.|
T Consensus 166 ~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~-~~-~~~~vi~~~S~SK~~~~~G 243 (395)
T d1xi9a_ 166 RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGS-LT-KDVPVIVMNGLSKVYFATG 243 (395)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHH-HC-SSSCEEEEEESTTTTCCGG
T ss_pred cccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhh-cC-CCCCEEEEeCcchhcccch
Confidence 7889999999999999888 67899999999999999999997666432221111 11 1222488999999998765
Q ss_pred ---cEEe
Q 019931 329 ---GFIA 332 (334)
Q Consensus 329 ---G~i~ 332 (334)
||++
T Consensus 244 lRvG~~~ 250 (395)
T d1xi9a_ 244 WRLGYMY 250 (395)
T ss_dssp GCCEEEE
T ss_pred hhcEeeE
Confidence 7654
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=9.6e-18 Score=159.27 Aligned_cols=186 Identities=16% Similarity=0.154 Sum_probs=138.7
Q ss_pred CCHHHHHHHHHhcCCCC--ccc--cc----cCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHhhhhhhcc
Q 019931 124 SHPTIAKAAARHGMGPR--GSA--LI----CGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVGNIASLLA 193 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~--~sr--~~----~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~~~~~~~~ 193 (334)
.+|+|++++.++-.... +.+ .. .-.....+++++++|+++|++ ++++++++++++..++.++.... +
T Consensus 14 ~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~--~- 90 (391)
T d1p3wa_ 14 VDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFY--Q- 90 (391)
T ss_dssp CCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHH--G-
T ss_pred CCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhh--c-
Confidence 58999999987632111 111 11 111345677889999999975 56777888899888887765320 0
Q ss_pred CCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCc
Q 019931 194 GDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDF 268 (334)
Q Consensus 194 ~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~ 268 (334)
++||.|++...+|.++...++.... .|.++..++.+ |++++++++++ +|++|++++++|++|.+
T Consensus 91 -------~~gd~Vv~~~~~~~s~~~~~~~~~~-~G~~v~~v~~~~~~~~d~~~~~~~i~~---~T~lv~is~~~n~tG~~ 159 (391)
T d1p3wa_ 91 -------KKGKHIITSKTEHKAVLDTCRQLER-EGFEVTYLAPQRNGIIDLKELEAAMRD---DTILVSIMHVNNEIGVV 159 (391)
T ss_dssp -------GGCCEEEEETTSCHHHHHHHHHHHH-TTCEEEEECCCTTSCCCHHHHHHHCCT---TEEEEECCSBCTTTCCB
T ss_pred -------CCCCEEEEeccccchHHHHHHHHHH-cCCEEEEeCCCCCCeEcHHHHHHhCCC---CcEEEEEECCCCCCeeE
Confidence 1378999999999998777665432 27888888754 67888888764 89999999999999999
Q ss_pred cCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCc-cEEe
Q 019931 269 APMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQG-GFIA 332 (334)
Q Consensus 269 ~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~G-G~i~ 332 (334)
.|+++|.++|+++|+++++|.+|+.|... .++. .++|+++.|++|.+|..| |++.
T Consensus 160 ~~~~~I~~~~~~~~~~~ivD~~~~~g~~~---------~d~~~~~~D~~~~s~~k~~g~~g~g~~~ 216 (391)
T d1p3wa_ 160 QDIAAIGEMCRARGIIYHVDATQSVGKLP---------IDLSQLKVDLMSFSGHKIYGPKGIGALY 216 (391)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTTBTTBC---------CCTTTSCCSEEEEESTTTTSCSSCEEEE
T ss_pred CCHHHHHHHhccCCcEEEEeeccccCCcc---------ccchhccccccccccccccCCCceEEEE
Confidence 99999999999999999999999987532 1221 356899999999998876 5544
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=2.6e-17 Score=154.57 Aligned_cols=198 Identities=15% Similarity=0.131 Sum_probs=144.9
Q ss_pred EEeecCccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhCC----CcEEEeccHHHHHHHHHHHHh
Q 019931 112 LLFSGNDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKKK----EDCLLCPTGFAANMAVIVAVG 186 (334)
Q Consensus 112 l~f~sn~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g~----e~alv~~sG~~An~~ai~al~ 186 (334)
|.|+-.| .+|..+|.|++|+++. ..+..+|....| .+..+++.+.+++.+|. +++++++++++++..++.+++
T Consensus 2 ~~~~~~~-~df~~p~~i~eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~ 79 (361)
T d1d2fa_ 2 LPFTISD-MDFATAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS 79 (361)
T ss_dssp EECCSSS-CSSCCCHHHHHHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS
T ss_pred cCcCCCC-CCCCCCHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc
Confidence 4555555 4788899999988775 333334544555 35556666666666563 568889999999999999887
Q ss_pred hhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC--------CCHHHHHHHHhcCCCCcEEEEE
Q 019931 187 NIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH--------CDMSHLKTLLSCCTMRKKVVVT 258 (334)
Q Consensus 187 ~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~--------~D~~~Le~~l~~~~~~~~lVv~ 258 (334)
++ ||.|++..+.|..+...+... +.+++.++. .|++.+++.+.+ +++++|++
T Consensus 80 ~~--------------gd~Vlv~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~~d~~~~~~~~~~--~~~~~i~l 139 (361)
T d1d2fa_ 80 ET--------------GEGVVIHTPAYDAFYKAIEGN----QRTVMPVALEKQADGWFCDMGKLEAVLAK--PECKIMLL 139 (361)
T ss_dssp CT--------------TCEEEEEESCCHHHHHHHHHT----TCEEEEEECEECSSSEECCHHHHHHHHTS--TTEEEEEE
T ss_pred cc--------------ccccccccccccchhHHHHhh----cceEEeecccccccccccccccchhhccc--CCceeEEe
Confidence 65 788888888888887777766 677666542 388888888865 47889999
Q ss_pred cCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEe
Q 019931 259 DSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIA 332 (334)
Q Consensus 259 e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~ 332 (334)
.+++||+|.+.+ +++|+++|+++|++||+||+|...+++....... ....++..+++.|+||++|..| |++.
T Consensus 140 ~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~--~~~~~~~~v~~~s~SK~~~~~g~R~g~~~ 217 (361)
T d1d2fa_ 140 CSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPW--SNVARGDWALLTSGSKSFNIPALTGAYGI 217 (361)
T ss_dssp ESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCG--GGTCCSSEEEEECSHHHHTCGGGCCEEEE
T ss_pred cccccccccccchhhhhhhhhhhhhhheeeeeccccccccccccccccc--ccccccccccccccccccccccccceeee
Confidence 999999998877 7789999999999999999999766653222221 2223344588999999997644 7764
Q ss_pred e
Q 019931 333 C 333 (334)
Q Consensus 333 ~ 333 (334)
.
T Consensus 218 ~ 218 (361)
T d1d2fa_ 218 I 218 (361)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.76 E-value=9.4e-19 Score=170.33 Aligned_cols=167 Identities=16% Similarity=0.007 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHH-HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFA-ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK 227 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~-An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~ 227 (334)
...+.++|+++|+++|+++++++++|++ +|++++.+++++ ||.|++++.+|.|+++++....
T Consensus 65 ~~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~~~--------------gd~Vi~~~~~H~Sv~~~~~~l~--- 127 (462)
T d1c4ka2 65 EGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSN--------------GDLVLFDRNNHKSVYNSALAMA--- 127 (462)
T ss_dssp BTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCT--------------TCEEEEETTCCHHHHHHHTTTT---
T ss_pred CHHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhcCC--------------CCeEEecccchHHHHHHHHHHh---
Confidence 3566899999999999999999988865 667778887765 8999999999999998766542
Q ss_pred CcEEEEe--eCC-------------CHHHHHHHHhc------CCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEE
Q 019931 228 MVEVFVY--KHC-------------DMSHLKTLLSC------CTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLV 286 (334)
Q Consensus 228 g~~v~~~--~~~-------------D~~~Le~~l~~------~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~Li 286 (334)
+..+++. +.+ +.+.+++.+.+ ...+++.+++.+.+|+.|.+.|+++|.++|++||++|+
T Consensus 128 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~ 207 (462)
T d1c4ka2 128 GGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIE 207 (462)
T ss_dssp CCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEE
T ss_pred cCCceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEE
Confidence 3322221 111 23333333221 12356667777888999999999999999999999999
Q ss_pred EecCcccccccCCC-c----ccccccCCCCCccEEEecCcccccCC-ccEEe
Q 019931 287 LDDAHGTFVCGKNG-G----GVAEQFNCERDVDICVGTLSKAAGCQ-GGFIA 332 (334)
Q Consensus 287 vDeAh~~Gv~G~~G-~----g~~~~~~~~~~~Div~~SlsKa~G~~-GG~i~ 332 (334)
+|+||+.+...... . ......+...++|+++.|++|++|+. ||.++
T Consensus 208 vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll 259 (462)
T d1c4ka2 208 FDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQI 259 (462)
T ss_dssp EECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEE
T ss_pred EechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEE
Confidence 99999987542111 1 11122344566799999999999884 45443
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.76 E-value=3.8e-18 Score=166.95 Aligned_cols=219 Identities=14% Similarity=0.113 Sum_probs=142.6
Q ss_pred hhcccceeEEEeecC---ccCCCCCCHHHHHHHHHh-cCCCCcccccc---CchHHHHHHHHHHHhHhC--CCcEEEecc
Q 019931 103 TFARQFKRLLLFSGN---DYLGLSSHPTIAKAAARH-GMGPRGSALIC---GYTNYHRLLESCLADLKK--KEDCLLCPT 173 (334)
Q Consensus 103 ~~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~---G~~~~~~~LE~~La~~~g--~e~alv~~s 173 (334)
.+|.+|++||||.++ ..||. +||+|.+|+.+. ..+...++... -...+.++|.++|.+..+ .+++++++|
T Consensus 47 l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~~~v~f~~s 125 (461)
T d1ohwa_ 47 LVDVDGNRMLDLYSQISSIPIGY-SHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMAC 125 (461)
T ss_dssp EEBTTSCEEEESSHHHHTCSSCB-TCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESS
T ss_pred EEECCCCEEEEcccCHHHHhhcC-CcHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhccCcceeeeecc
Confidence 356888999999764 45777 499999988642 11111111111 112345667777776654 467888899
Q ss_pred HHHHHHHHHHHHhhhhh-------------h--ccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhc---------CCc
Q 019931 174 GFAANMAVIVAVGNIAS-------------L--LAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERT---------KMV 229 (334)
Q Consensus 174 G~~An~~ai~al~~~~~-------------~--~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~---------~g~ 229 (334)
|++|+..+++....-.. + ......+.+++..+|-....+|+.+...+.++... ...
T Consensus 126 GseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~ 205 (461)
T d1ohwa_ 126 GSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDW 205 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCC
T ss_pred hhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCC
Confidence 99999999986532000 0 00011122333456778899999887776655210 001
Q ss_pred EEEEeeC-----------------CCHHHHHHHHhc---CCCCcEEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEE
Q 019931 230 EVFVYKH-----------------CDMSHLKTLLSC---CTMRKKVVVTDSLFSMDGDFAP----MVELVKLRRKYGFLL 285 (334)
Q Consensus 230 ~v~~~~~-----------------~D~~~Le~~l~~---~~~~~~lVv~e~v~n~~G~~~p----L~~L~ela~k~ga~L 285 (334)
.+..+++ ++++++++++.. ...+..+|++|++.+..|.+.| |++|+++|++||++|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gill 285 (461)
T d1ohwa_ 206 PIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAF 285 (461)
T ss_dssp CEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEE
T ss_pred cccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcce
Confidence 1111111 124566666542 2346789999999999887655 899999999999999
Q ss_pred EEecCcccccccCCCcccc-cccCCCCCccEEEecCcccccC
Q 019931 286 VLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 286 ivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G~ 326 (334)
|+||+++. +|++|..++ +++++.+..||+ +++|+++.
T Consensus 286 I~DEV~tG--~gRtG~~~~~e~~gi~~~PDiv--~~gK~l~~ 323 (461)
T d1ohwa_ 286 LVDEVQTG--GGSTGKFWAHEHWGLDDPADVM--TFSKKMMT 323 (461)
T ss_dssp EEECTTTC--SSTTSSSSGGGGGCCSSCCSEE--EECGGGSS
T ss_pred eccccccc--cccccccccccccccccCchhh--hhhhcccc
Confidence 99999985 789998764 788887556777 89999974
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.75 E-value=8.5e-18 Score=152.96 Aligned_cols=196 Identities=16% Similarity=0.104 Sum_probs=132.6
Q ss_pred eEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEe-ccHHHHHHHHHHHHhhh
Q 019931 110 RLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLC-PTGFAANMAVIVAVGNI 188 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~-~sG~~An~~ai~al~~~ 188 (334)
.+|||+|+||+|. ||+|++|++++..+. ...+|..+.++++|+++++++|.+..++| +||++||..++.++...
T Consensus 3 ~~~~f~s~n~~g~--~P~v~~A~~~a~~~~---~~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~~~ 77 (345)
T d1v72a1 3 PALGFSSDNIAGA--SPEVAQALVKHSSGQ---AGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPP 77 (345)
T ss_dssp CCCBCSCGGGCCC--CHHHHHHHHHTTSSC---CCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCT
T ss_pred CCcCcCCCCCCCC--CHHHHHHHHHHhccC---ccccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHHhc
Confidence 4689999999997 899999999875543 23346789999999999999999887765 99999999999876653
Q ss_pred hhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEee-----CCCHHHHHHHHhcCC---CCc-EEEEEc
Q 019931 189 ASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYK-----HCDMSHLKTLLSCCT---MRK-KVVVTD 259 (334)
Q Consensus 189 ~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~-----~~D~~~Le~~l~~~~---~~~-~lVv~e 259 (334)
++.++.+...|.+......+.... +..+.... ..+++.+++.+.+.. ..+ ..+++.
T Consensus 78 --------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 142 (345)
T d1v72a1 78 --------------WGNIYCHPASHINNDECGAPEFFS-NGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSI 142 (345)
T ss_dssp --------------TEEEEECTTSHHHHSSTTHHHHHT-TSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEE
T ss_pred --------------CCccccccccceeeechhhHHHhc-CcccccccccccccccHHHhhhhhcccccccccccceeeee
Confidence 677788888888865544433222 33333332 348899999887532 122 234444
Q ss_pred CCCCCCCC---ccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC
Q 019931 260 SLFSMDGD---FAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 260 ~v~n~~G~---~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
...++.+. +.+++++.++|++||+++++|++|..+.++....+.. ........+..+.+..|..+.
T Consensus 143 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 211 (345)
T d1v72a1 143 TQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPA-EMTWKAGVDALSFGATKNGVL 211 (345)
T ss_dssp ESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTT-TTTGGGTCCEEEECCGGGTCS
T ss_pred eccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHH-HhhccccccccccCccccccc
Confidence 44455444 3457888999999999999999998765543232222 222233344554444444443
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.75 E-value=1.3e-17 Score=159.14 Aligned_cols=205 Identities=12% Similarity=0.055 Sum_probs=140.7
Q ss_pred ccceeEEEeecCccCCCCCCHHHHHHHHHh-cCCCCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHHHHH
Q 019931 106 RQFKRLLLFSGNDYLGLSSHPTIAKAAARH-GMGPRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAANMA 180 (334)
Q Consensus 106 ~~g~~~l~f~sn~yLgl~~~p~v~~a~~~~-g~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~An~~ 180 (334)
+.|+++|+|+..| ..+..+|.|++|+.+. ..|..++ ..|..++.+.+.+.+.+.+| .+.+++++++.+|+..
T Consensus 28 ~~g~~vi~l~~g~-pdf~~p~~v~~al~~~~~~~~~~Y--~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~ 104 (394)
T d1c7na_ 28 EVGNEVVPLSVAD-MEFKNPPELIEGLKKYLDETVLGY--TGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFN 104 (394)
T ss_dssp TCCTTCCCCCSSS-CSSCCCHHHHHHHHHHHHHCCCSS--BCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHH
T ss_pred hcCCCeEEccCCC-CCCCCCHHHHHHHHHHHhCCCcCC--CCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhh
Confidence 3458899998877 5899999999987653 2333333 23443333344444443334 3568899999999999
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC--------CCHHHHHHHHhcCCCC
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH--------CDMSHLKTLLSCCTMR 252 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~--------~D~~~Le~~l~~~~~~ 252 (334)
++.+++++ ||.|++..+.+.......... +...+.++. .|.+.++.++.. ++
T Consensus 105 ~~~~~~~p--------------gd~vi~~~p~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~d~~~~~~~~~~--~~ 164 (394)
T d1c7na_ 105 AVREFTKP--------------GDGVIIITPVYYPFFMAIKNQ----ERKIIECELLEKDGYYTIDFQKLEKLSKD--KN 164 (394)
T ss_dssp HHHHHCCT--------------TCEEEECSSCCTHHHHHHHTT----TCEEEECCCEEETTEEECCHHHHHHHHTC--TT
T ss_pred hhcccccc--------------ccccccccCcccchhhHHhhh----hhcccccccccccccccchhhhhhhhhcc--cc
Confidence 99998875 777877777766666666655 666665542 367777777653 46
Q ss_pred cEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEecCcccccCCc
Q 019931 253 KKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~SlsKa~G~~G 328 (334)
+++|++.+++||+|.+.+ +++|+++|++++++||+||+|...++....... ........+..+++.||||+||..|
T Consensus 165 ~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G 244 (394)
T d1c7na_ 165 NKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAG 244 (394)
T ss_dssp EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGG
T ss_pred ceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccc
Confidence 899999999999999988 667899999999999999999976664322111 1111101233588999999998754
Q ss_pred ---cEEee
Q 019931 329 ---GFIAC 333 (334)
Q Consensus 329 ---G~i~~ 333 (334)
|++++
T Consensus 245 ~R~g~~~~ 252 (394)
T d1c7na_ 245 MGMSNIII 252 (394)
T ss_dssp GCCEEEEC
T ss_pred cccccccc
Confidence 55443
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.75 E-value=4e-18 Score=160.04 Aligned_cols=155 Identities=18% Similarity=0.167 Sum_probs=123.5
Q ss_pred HHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEE
Q 019931 154 LLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFV 233 (334)
Q Consensus 154 ~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~ 233 (334)
.||++||++.|.+.+++|+||++|+..++.+++++ ||.|++....++....-+.-..++.|.++..
T Consensus 2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll~~--------------Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~ 67 (331)
T d1pffa_ 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKA--------------GDHLISDDCLYGCTHALFEHQLRKFGVEVDF 67 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCT--------------TCEEEEESCCCHHHHHHHHTHHHHTTCEEEE
T ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhCC--------------CCEEEEeCCCchHHHHHHHHHHHhcCeEEEE
Confidence 58999999999999999999999999999988876 5555554443344433333222344899999
Q ss_pred eeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHH-HHcCCEEEEecCcccccccCCCcccccccCCCCC
Q 019931 234 YKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLR-RKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERD 312 (334)
Q Consensus 234 ~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela-~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~ 312 (334)
++..|.+.+++++++ ++++|++|++.||...+.|++++++++ +++|+++|+|+..+.+++ ..++..+
T Consensus 68 ~d~~d~~~~~~~i~~---~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~---------~~pl~~G 135 (331)
T d1pffa_ 68 IDMAVPGNIEKHLKP---NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPIL---------TNPLDLG 135 (331)
T ss_dssp ECTTSTTHHHHTCCT---TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHH---------CCGGGGT
T ss_pred ecccchhhHhhhccc---ccceeeeecccccccccccchhhhhhhhcccCceEEeecccccccc---------ccccccC
Confidence 999999999998864 899999999999999999999999885 678999999999887643 1234456
Q ss_pred ccEEEecCcccccC----CccEEeeC
Q 019931 313 VDICVGTLSKAAGC----QGGFIACR 334 (334)
Q Consensus 313 ~Div~~SlsKa~G~----~GG~i~~~ 334 (334)
+||++.|++|.+++ .||+++++
T Consensus 136 aDiVv~S~TKy~~Gh~d~~~G~v~~~ 161 (331)
T d1pffa_ 136 VDIVVHSATKYINGHTDVVAGLVCSR 161 (331)
T ss_dssp CSEEEEETTTTTSSSSSCCCEEEEEC
T ss_pred CCEEEecchhhcCCCCcccccccccc
Confidence 89999999999976 45777653
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=2.7e-17 Score=154.86 Aligned_cols=196 Identities=15% Similarity=0.134 Sum_probs=146.6
Q ss_pred eEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHHhh
Q 019931 110 RLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAVGN 187 (334)
Q Consensus 110 ~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al~~ 187 (334)
..|||+.++. ++..+|.+++|+++.-....+|....|. .+|++++|++++. +++++++++++++..++.+++.
T Consensus 26 ~~I~ls~g~p-~~~~p~~i~~al~~~l~~~~~Y~~~~G~----~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~~ 100 (368)
T d1v2da_ 26 GAVNLGQGFP-SNPPPPFLLEAVRRALGRQDQYAPPAGL----PALREALAEEFAVEPESVVVTSGATEALYVLLQSLVG 100 (368)
T ss_dssp TCEECCCCSC-SSCCCHHHHHHHHHHTTTSCSCCCTTCC----HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCC
T ss_pred CCEEecCCCC-CCCCCHHHHHHHHHHhhcccCCCCCcCC----HHHHHHHHhhcccCCcceeeccchHHHHHHHhhcccc
Confidence 3689987763 7788999999998865444444444443 5788899999985 4588999999999999998876
Q ss_pred hhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC--------CCHHHHHHHHhcCCCCcEEEEEc
Q 019931 188 IASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH--------CDMSHLKTLLSCCTMRKKVVVTD 259 (334)
Q Consensus 188 ~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~--------~D~~~Le~~l~~~~~~~~lVv~e 259 (334)
+ +|.|+...+.|......++.. +.+++.++. .|++.|++.+++ ++++|++.
T Consensus 101 ~--------------~d~v~~~~p~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i~~~ 159 (368)
T d1v2da_ 101 P--------------GDEVVVLEPFFDVYLPDAFLA----GAKARLVRLDLTPEGFRLDLSALEKALTP---RTRALLLN 159 (368)
T ss_dssp T--------------TCEEEEEESCCTTHHHHHHHT----TCEEEEEECEEETTEEECCHHHHHTTCCT---TEEEEEEE
T ss_pred c--------------cccccccCCcchhhhhHHHhc----CCccceeccccccccccCCHHHHHHhhcc---CceEEEEc
Confidence 5 778888777888877777766 666665543 378888877764 67888889
Q ss_pred CCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEee
Q 019931 260 SLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 260 ~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
+++||+|.+.+ +++|+++|++||+++++||+|.............. ...+..+++.|+||.++..| ||+++
T Consensus 160 ~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~sk~~~~~G~R~g~~~~ 236 (368)
T d1v2da_ 160 TPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLRE---FAPERTFTVGSAGKRLEATGYRVGWIVG 236 (368)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHH---HCTTTEEEEEEHHHHTTCGGGCCEEEEC
T ss_pred CCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccccccccc---ccccccceeecccccccccccccccccc
Confidence 99999999987 77899999999999999999987654332211111 11233577889999998765 77765
Q ss_pred C
Q 019931 334 R 334 (334)
Q Consensus 334 ~ 334 (334)
+
T Consensus 237 ~ 237 (368)
T d1v2da_ 237 P 237 (368)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.4e-17 Score=161.58 Aligned_cols=209 Identities=16% Similarity=0.106 Sum_probs=139.2
Q ss_pred hcccceeEEEeecC---ccCCCCCCHHHHHHHHH-hcCCCCccccccCchHHHHHHHHHHHhHhC--CCcEEEeccHHHH
Q 019931 104 FARQFKRLLLFSGN---DYLGLSSHPTIAKAAAR-HGMGPRGSALICGYTNYHRLLESCLADLKK--KEDCLLCPTGFAA 177 (334)
Q Consensus 104 ~~~~g~~~l~f~sn---~yLgl~~~p~v~~a~~~-~g~g~~~sr~~~G~~~~~~~LE~~La~~~g--~e~alv~~sG~~A 177 (334)
++.+|++||||.++ ..||. +||+|++|+++ ............ .++...++.+++.+..+ .+.+.+++||++|
T Consensus 38 ~D~dG~~ylD~~~g~~~~~lGh-~~p~i~~Ai~~q~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA 115 (429)
T d1s0aa_ 38 ILSDGRRLVDGMSSWWAAIHGY-NHPQLNAAMKSQIDAMSHVMFGGI-THAPAIELCRKLVAMTPQPLECVFLADSGSVA 115 (429)
T ss_dssp EETTSCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHHHCSCCCCSSE-ECHHHHHHHHHHHHHSCTTCCEEEEESSHHHH
T ss_pred EECCCCEEEECcccHHHHhhcC-CcHHHHHHHHHHHHhcCCcccCCc-cchHHHHHHHHHHhhhccCcceeeeccccccc
Confidence 45778999999875 34666 58999998754 332221111111 13555777788887764 4567888999999
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC---------CcEEEEee-----------CC
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK---------MVEVFVYK-----------HC 237 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~---------g~~v~~~~-----------~~ 237 (334)
+..+++........ . .+++..+|..+..+|+.+.....++.... .......+ .+
T Consensus 116 ~e~A~k~ar~~~~~-~-----g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (429)
T d1s0aa_ 116 VEVAMKMALQYWQA-K-----GEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDER 189 (429)
T ss_dssp HHHHHHHHHHHHHH-H-----TCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGG
T ss_pred hhhhhhhhhheeec-c-----cccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchh
Confidence 99999865432100 0 01234677788889998776655542100 00111111 12
Q ss_pred CHHHHHHHHhcCCCCcEEEEEcCCC-CCCCCcc-C---HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCC
Q 019931 238 DMSHLKTLLSCCTMRKKVVVTDSLF-SMDGDFA-P---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCER 311 (334)
Q Consensus 238 D~~~Le~~l~~~~~~~~lVv~e~v~-n~~G~~~-p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~ 311 (334)
+.+++++.+.+...+...|++|++. +..|... | +++|+++|++||++||+||+++. +|++|.+++ +++++.|
T Consensus 190 ~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tG--fGRtG~~~~~~~~~v~P 267 (429)
T d1s0aa_ 190 DMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATG--FGRTGKLFACEHAEIAP 267 (429)
T ss_dssp GGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSSSGGGGGTCCC
T ss_pred hhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccc--ccccccccccccceecc
Confidence 5666666666555678899999987 5555543 3 89999999999999999999994 789888764 7889888
Q ss_pred CccEEEecCcccccC
Q 019931 312 DVDICVGTLSKAAGC 326 (334)
Q Consensus 312 ~~Div~~SlsKa~G~ 326 (334)
||+ +++|+++.
T Consensus 268 --Di~--~~gK~l~g 278 (429)
T d1s0aa_ 268 --DIL--CLGKALTG 278 (429)
T ss_dssp --SEE--EECGGGGT
T ss_pred --ccc--cccccccc
Confidence 455 89999954
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.74 E-value=6.7e-18 Score=159.09 Aligned_cols=155 Identities=17% Similarity=0.253 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||+++++++|.+++++++||++|+..++.++.- ++||.|+++...|.+...++..+ |
T Consensus 30 G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~-------------~~gdeVi~~~~~~~~~~~ai~~~----g 92 (376)
T d1mdoa_ 30 GPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGI-------------GEGDEVITPSMTWVSTLNMIVLL----G 92 (376)
T ss_dssp SHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCHHHHHHHHHT----T
T ss_pred CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhCC-------------CCCCEEEEecccccccccchhcc----c
Confidence 477799999999999999999999999999999998732 14899999999999999999888 8
Q ss_pred cEEEEeeCC------CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcc
Q 019931 229 VEVFVYKHC------DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG 302 (334)
Q Consensus 229 ~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g 302 (334)
++++.++.+ |+++|++++++ +|++|++.+ +.|.++|+++|.++|++||++||.|.||++|..-. +.
T Consensus 93 ~~pv~~d~~~~~~~~d~~~l~~~i~~---~tkaIi~~h---~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~-~~- 164 (376)
T d1mdoa_ 93 ANPVMVDVDRDTLMVTPEHIEAAITP---QTKAIIPVH---YAGAPADLDAIYALGERYGIPVIEDAAHATGTSYK-GR- 164 (376)
T ss_dssp CEEEEECBCTTTCCBCHHHHHHHCCT---TEEEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEET-TE-
T ss_pred cceeeecccccccCCCHHHHHHhcCC---CCeEEEEeC---CCCCccchhHHHHHHHhcCceEEeccchhccCeeC-Ce-
Confidence 888888753 89999999875 788888665 45789999999999999999999999999875311 11
Q ss_pred cccccCCCCCccEEEecC--cccccC-CccEEeeC
Q 019931 303 VAEQFNCERDVDICVGTL--SKAAGC-QGGFIACR 334 (334)
Q Consensus 303 ~~~~~~~~~~~Div~~Sl--sKa~G~-~GG~i~~~ 334 (334)
..+ ..+..+.|| +|.+++ .||+|+++
T Consensus 165 ---~~g---~~g~~~~Sf~~~K~l~~g~GG~i~t~ 193 (376)
T d1mdoa_ 165 ---HIG---ARGTAIFSFHAIKNITCAEGGIVVTD 193 (376)
T ss_dssp ---ETT---SSSEEEEECCTTSSSCSSSCEEEEES
T ss_pred ---ecc---cccCccccCCCcCCCCCCCCCEEEEe
Confidence 111 123345566 698854 67888763
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=6.6e-17 Score=153.29 Aligned_cols=203 Identities=16% Similarity=0.117 Sum_probs=150.5
Q ss_pred ccceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHHHHHH
Q 019931 106 RQFKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAANMAV 181 (334)
Q Consensus 106 ~~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~An~~a 181 (334)
..|+++|||+.++ -++..++.+++++.+...+..+|....|..++.+.+.+.+.+..| .+++++++++++++..+
T Consensus 25 ~~g~~vi~l~~G~-p~~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~ 103 (389)
T d2gb3a1 25 KRGVRIHHLNIGQ-PDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFS 103 (389)
T ss_dssp HTTCEEEECSSCC-CCSCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHH
T ss_pred HcCCCEEECCCCC-CCCCCCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccccccccc
Confidence 4468999998876 367778889999988766666677777877777777777777655 35688888889999999
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEE
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKV 255 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~l 255 (334)
+.+++.+ +|.|++..+++......+... +..++.++.. +.+.++. ...+++++
T Consensus 104 ~~~l~~~--------------gd~V~i~~P~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 162 (389)
T d2gb3a1 104 FAVIANP--------------GDEILVLEPFYANYNAFAKIA----GVKLIPVTRRMEEGFAIPQNLES---FINERTKG 162 (389)
T ss_dssp HHHHCCT--------------TCEEEEEESCCTHHHHHHHHH----TCEEEEEECCGGGTSCCCTTGGG---GCCTTEEE
T ss_pred ccccccC--------------CCeEEEeCCCCcccccccccc----Cccccccccccccccchhhhhhh---hcccCccE
Confidence 9988875 777887777777777777666 7777776643 2222222 22347899
Q ss_pred EEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---c
Q 019931 256 VVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---G 329 (334)
Q Consensus 256 Vv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G 329 (334)
+++.+++||+|.+.+ +++|+++|++|++++|.||+|....+....... .....+..+++.|+||.++..| |
T Consensus 163 ~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~---~~~~~~~~~v~~s~sK~~~~~GlRiG 239 (389)
T d2gb3a1 163 IVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA---LSIESDKVVVIDSVSKKFSACGARVG 239 (389)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG---GGSCCTTEEEEEESTTTTTCGGGCCE
T ss_pred EEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccccc---cccccccccccccccccccCccccee
Confidence 999999999998877 778999999999999999999875554321111 2223344688899999998877 8
Q ss_pred EEee
Q 019931 330 FIAC 333 (334)
Q Consensus 330 ~i~~ 333 (334)
|+++
T Consensus 240 ~~~~ 243 (389)
T d2gb3a1 240 CLIT 243 (389)
T ss_dssp EEEC
T ss_pred eeec
Confidence 8765
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.73 E-value=1.2e-16 Score=153.41 Aligned_cols=204 Identities=13% Similarity=0.047 Sum_probs=148.9
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC----CCCccccccCchHHHHHHHHHHHhHhCC-----CcEEEeccHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM----GPRGSALICGYTNYHRLLESCLADLKKK-----EDCLLCPTGFAANM 179 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~----g~~~sr~~~G~~~~~~~LE~~La~~~g~-----e~alv~~sG~~An~ 179 (334)
...|||+..+ -.+..++.+++++++.-. +..+|....|..++.+.+.+.+.+.+|. +++++++++++|+.
T Consensus 26 ~~~I~L~~G~-Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~ 104 (418)
T d2r5ea1 26 YKPLNLGQGF-PDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY 104 (418)
T ss_dssp HCCEECSSSC-CSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CCCEEccCCC-CCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhh
Confidence 3568988776 467778889998866432 2234666677777777788888777662 46888888899999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC---------------CHHHHHH
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC---------------DMSHLKT 244 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~---------------D~~~Le~ 244 (334)
.++.+++.+ ||.|++..+.+......+... +.+++.++.. +.+.+++
T Consensus 105 ~~~~~l~~~--------------gd~vlv~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (418)
T d2r5ea1 105 ATIQGHVDE--------------GDEVIIIEPFFDCYEPMVKAA----GGIPRFIPLKPNKTGGTISSADWVLDNNELEA 166 (418)
T ss_dssp HHHHHHCCT--------------TCEEEEEESCCTTHHHHHHHT----TCEEEEEECEESCCSSCEEGGGEECCHHHHHH
T ss_pred hhhhhcccc--------------ccceeccccccchhhHHHHHc----CCeEEEEEecccccccchhhhhhhhhHHHHhh
Confidence 999998875 788888888888888777777 7777766531 3444544
Q ss_pred HHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCc
Q 019931 245 LLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLS 321 (334)
Q Consensus 245 ~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~Sls 321 (334)
.. ..+++++++.+++||+|.+.+ +++|+++|++|++++|.||+|...++..........+.-.....|++.|||
T Consensus 167 ~~---~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~S 243 (418)
T d2r5ea1 167 LF---NEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAG 243 (418)
T ss_dssp HC---CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHH
T ss_pred hh---hccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCC
Confidence 43 347899999999999998887 667899999999999999999987664322111111111122348899999
Q ss_pred ccccCCc---cEEeeC
Q 019931 322 KAAGCQG---GFIACR 334 (334)
Q Consensus 322 Ka~G~~G---G~i~~~ 334 (334)
|.++..| ||++++
T Consensus 244 K~~~~pGlRiG~~~~~ 259 (418)
T d2r5ea1 244 KTFSLTGWKIGWAYGP 259 (418)
T ss_dssp HHTTCGGGCCEEEESC
T ss_pred ccccCCCccccccccc
Confidence 9999877 888764
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=2.7e-17 Score=157.40 Aligned_cols=157 Identities=15% Similarity=0.086 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.|..+.||++|+++.|.+.+++|+||++|+.+++ +++.+ ++.+|..+..++. ...-+....+..+
T Consensus 54 nPT~~~lE~~la~LE~~~~a~~~sSGmaAi~~~l-~~l~~-------------gd~iv~~~~~yg~-t~~~~~~~l~~~g 118 (393)
T d1n8pa_ 54 NPNRENLERAVAALENAQYGLAFSSGSATTATIL-QSLPQ-------------GSHAVSIGDVYGG-THRYFTKVANAHG 118 (393)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHH-HTSCS-------------SCEEEEESSCCHH-HHHHHHHTSTTTC
T ss_pred ChHHHHHHHHHHHHhCCceEEEecCchhHHHhhh-hcccC-------------CCeeeeeeeeccc-chhhhhhhhhccc
Confidence 4788999999999999999999999998886555 44443 2445555555544 4433433333446
Q ss_pred cEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHH----HcCCEEEEecCcccccccCCCcccc
Q 019931 229 VEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRR----KYGFLLVLDDAHGTFVCGKNGGGVA 304 (334)
Q Consensus 229 ~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~----k~ga~LivDeAh~~Gv~G~~G~g~~ 304 (334)
.++..++ .+.+++++++++ ++++|++|+|.||...+.|+++|+++|+ ++|+++|||+..+..++
T Consensus 119 i~~~~~~-~~~~~~~~~i~~---~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~-------- 186 (393)
T d1n8pa_ 119 VETSFTN-DLLNDLPQLIKE---NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYI-------- 186 (393)
T ss_dssp SCCEEES-SHHHHHHHHSCS---SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHH--------
T ss_pred ceeEEee-cchHHHHHHhhh---hcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCccc--------
Confidence 7666665 456788888764 8999999999999999999999999999 77899999999887643
Q ss_pred cccCCCCCccEEEecCcccccC----CccEEee
Q 019931 305 EQFNCERDVDICVGTLSKAAGC----QGGFIAC 333 (334)
Q Consensus 305 ~~~~~~~~~Div~~SlsKa~G~----~GG~i~~ 333 (334)
..++..++||++.|++|.+++ .||+|+.
T Consensus 187 -~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~ 218 (393)
T d1n8pa_ 187 -SNPLNFGADIVVHSATKYINGHSDVVLGVLAT 218 (393)
T ss_dssp -CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred -CCchhhCCCEEEEccccccCCCCccccceeee
Confidence 123456789999999999986 5677654
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.71 E-value=6.2e-17 Score=147.53 Aligned_cols=199 Identities=18% Similarity=0.157 Sum_probs=133.0
Q ss_pred EEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhh
Q 019931 111 LLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIAS 190 (334)
Q Consensus 111 ~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~ 190 (334)
++||.|.. . -.-+|++++|+.+...|.. .+|..+.+.+||++||+++|.+++++++||++||+.+++++..+
T Consensus 1 ~~~~~~~~-~-t~p~p~v~~A~~~a~~g~~----~yg~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~~~-- 72 (343)
T d1m6sa_ 1 MIDLRSDT-V-TKPTEEMRKAMAQAEVGDD----VYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQR-- 72 (343)
T ss_dssp CEECSCGG-G-CCCCHHHHHHHHTCCCCCG----GGTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHCCT--
T ss_pred Cccccccc-C-CCCCHHHHHHHHhhhcCCc----ccCCCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhcc--
Confidence 36776654 2 2237999999987655533 46677999999999999999999999999999999999988764
Q ss_pred hccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEee----CCCHHHHHHHHhcCC---CCcE-EEEEcCCC
Q 019931 191 LLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYK----HCDMSHLKTLLSCCT---MRKK-VVVTDSLF 262 (334)
Q Consensus 191 ~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~----~~D~~~Le~~l~~~~---~~~~-lVv~e~v~ 262 (334)
+|.++.+...|.++.......... ...+...+ ..|++.++..+.... .++. +++...++
T Consensus 73 ------------g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 139 (343)
T d1m6sa_ 73 ------------GDEVILEADSHIFWYEVGAMAVLS-GVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHN 139 (343)
T ss_dssp ------------TCEEEEETTCHHHHSSTTHHHHHT-CCEEEEECEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBT
T ss_pred ------------CCceeccccccceeeecccccccc-cceeeccccccCccCHHHHHHhhhhhhcccccccccccccccc
Confidence 777888888887765444433211 33333332 248888888886532 2344 45555666
Q ss_pred CCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccc-cCCccEEee
Q 019931 263 SMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAA-GCQGGFIAC 333 (334)
Q Consensus 263 n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~-G~~GG~i~~ 333 (334)
++.|.+.| +++|+++|+++|+++++|++|..+..+..+....... ...+..+.+.+|.. |..++++.+
T Consensus 140 ~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~ 211 (343)
T d1m6sa_ 140 RSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYA---GYADSVMFCLSKGLCAPVGSVVVG 211 (343)
T ss_dssp TTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHH---HTCSEEEEESSSTTCCSSCEEEEE
T ss_pred cCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhc---cccccccccccccccccccccccc
Confidence 66676655 6678888899999999999999765543222221111 12234444445544 445555543
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.70 E-value=7.1e-16 Score=147.40 Aligned_cols=204 Identities=14% Similarity=0.155 Sum_probs=141.8
Q ss_pred eeEEEeecCcc-CC--CCCCHHHHHHHHHhc--CCCCccccccCchHHHHHHHHHHHhHhC----------CCcEEEecc
Q 019931 109 KRLLLFSGNDY-LG--LSSHPTIAKAAARHG--MGPRGSALICGYTNYHRLLESCLADLKK----------KEDCLLCPT 173 (334)
Q Consensus 109 ~~~l~f~sn~y-Lg--l~~~p~v~~a~~~~g--~g~~~sr~~~G~~~~~~~LE~~La~~~g----------~e~alv~~s 173 (334)
+++|||+.++. +. +...+.+++++++.. ....+|....|...+.+.+.+.+.+.++ .++++++++
T Consensus 30 ~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G 109 (412)
T d1bw0a_ 30 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSG 109 (412)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESH
T ss_pred CCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecc
Confidence 78899988752 22 223566777765532 2223455566776666666666665432 346888899
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHH
Q 019931 174 GFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLL 246 (334)
Q Consensus 174 G~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l 246 (334)
+++|+..++.+++++ ||.|++..+.+......++.. |.+++.++. .|+++|++..
T Consensus 110 ~~~al~~~~~~l~~~--------------Gd~Vlv~~P~y~~~~~~~~~~----G~~~~~v~~~~~~~~~~~~~~l~~~~ 171 (412)
T d1bw0a_ 110 GSHGILMAITAICDA--------------GDYALVPQPGFPHYETVCKAY----GIGMHFYNCRPENDWEADLDEIRRLK 171 (412)
T ss_dssp HHHHHHHHHHHHCCT--------------TCEEEEEESCCTHHHHHHHHT----TCEEEEEEEEGGGTTEECHHHHHHHC
T ss_pred cccchhhhhhhhhcc--------------ccceeeeeccchhhhhhhhcc----CccccccccccccccchhhHHHHhhh
Confidence 999999999998875 788887777777777777776 888887763 2666776665
Q ss_pred hcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccC-CCC-CccEEEecC
Q 019931 247 SCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFN-CER-DVDICVGTL 320 (334)
Q Consensus 247 ~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~-~~~-~~Div~~Sl 320 (334)
. .+++++++.+++||+|.+.+ +++|.++|++|+++||+||+|....+...-... ..... ... ..-++++||
T Consensus 172 ~---~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 248 (412)
T d1bw0a_ 172 D---DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGT 248 (412)
T ss_dssp C---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEES
T ss_pred h---ccccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCcccccccccccccccccccccc
Confidence 4 37889999999999999877 678889999999999999999875553211111 11111 111 113778899
Q ss_pred cccccCCc---cEEee
Q 019931 321 SKAAGCQG---GFIAC 333 (334)
Q Consensus 321 sKa~G~~G---G~i~~ 333 (334)
||.|+..| ||+++
T Consensus 249 SK~~~~~G~RvG~~~~ 264 (412)
T d1bw0a_ 249 AKNLVVPGWRLGWLLY 264 (412)
T ss_dssp TTTTSCGGGCCEEEEE
T ss_pred CccCccCCCCcccccc
Confidence 99998876 88765
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=2.3e-16 Score=151.16 Aligned_cols=187 Identities=16% Similarity=0.133 Sum_probs=136.1
Q ss_pred CCHHHHHHHHHhc---CCC---CccccccCchHHHHHHHHHHHhHhCC---CcEEEeccHHHHHHHHHHHHhhhhhhccC
Q 019931 124 SHPTIAKAAARHG---MGP---RGSALICGYTNYHRLLESCLADLKKK---EDCLLCPTGFAANMAVIVAVGNIASLLAG 194 (334)
Q Consensus 124 ~~p~v~~a~~~~g---~g~---~~sr~~~G~~~~~~~LE~~La~~~g~---e~alv~~sG~~An~~ai~al~~~~~~~~~ 194 (334)
.++.|++++.+|- .+. +.+....-.....++.++++++++|+ +.+++++++++++..++.++....
T Consensus 34 ~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~----- 108 (405)
T d1jf9a_ 34 KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSN----- 108 (405)
T ss_dssp CCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHHH-----
T ss_pred CCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccccc-----
Confidence 5778888765531 111 11111111135567888999999984 346677888888888777644210
Q ss_pred CCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCcc
Q 019931 195 DEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFA 269 (334)
Q Consensus 195 ~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~ 269 (334)
..++|.|++...+|.+...+++......|++++.++.+ |++.+++++.+ +|++|++..++|.+|.+.
T Consensus 109 -----~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i~~---~t~lv~~~~v~~~tG~~~ 180 (405)
T d1jf9a_ 109 -----VRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE---KTRLLAITHVSNVLGTEN 180 (405)
T ss_dssp -----CCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT---TEEEEEEESBCTTTCCBC
T ss_pred -----cCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhccC---CcEEEEEecCCCcccccC
Confidence 12488899888999887777764322337888888743 78888887764 899999999999999999
Q ss_pred CHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccccCCc-cEEe
Q 019931 270 PMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAAGCQG-GFIA 332 (334)
Q Consensus 270 pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~G~~G-G~i~ 332 (334)
|+++|.++|+++|+++++|.+|+.|.+- .++ ..++|+++.|++|-+|+.| |++.
T Consensus 181 pi~~i~~~~~~~g~~~~vD~~q~~g~~~---------id~~~~~~D~~~~s~hK~~Gp~G~g~l~ 236 (405)
T d1jf9a_ 181 PLAEMITLAHQHGAKVLVDGAQAVMHHP---------VDVQALDCDFYVFSGHKLYGPTGIGILY 236 (405)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTTTTTSC---------CCHHHHTCSEEEEEGGGTTSCSSCEEEE
T ss_pred chHHhhhHHHHcCCeeecccceeccccc---------cchhhcCCceeeccccccccCCCceeee
Confidence 9999999999999999999999987431 122 2457999999999999876 5543
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.68 E-value=1.2e-16 Score=155.98 Aligned_cols=198 Identities=11% Similarity=0.027 Sum_probs=134.6
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNI 188 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~ 188 (334)
..+||+-|...-+-. .+...+++ -.|.- .+|..+...+||+++++++|.+++++++||++||..++++++++
T Consensus 42 ~v~iDl~sDs~t~am-~~~~~aa~---~~GDd----~Y~~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~~~ 113 (456)
T d1c7ga_ 42 DIYIDLLTDSGTNAM-SDKQWAGM---MIGDE----AYAGSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKP 113 (456)
T ss_dssp GCSEECSCSSSCCCE-EHHHHHHT---TSCCC----CSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCT
T ss_pred ceeeEcccCCCcccc-hHHHHHHH---hccch----hccCCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhcCC
Confidence 567888776643211 22211221 13322 34557888999999999999999999999999999999998875
Q ss_pred hhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEee---------------CCCHHHHHHHHhcCC-CC
Q 019931 189 ASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYK---------------HCDMSHLKTLLSCCT-MR 252 (334)
Q Consensus 189 ~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~---------------~~D~~~Le~~l~~~~-~~ 252 (334)
||+|+++...+.+.. .+... |+..+... ..|+++|+++|++.. ..
T Consensus 114 --------------Gd~Vi~~~~f~~~~~-~i~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~ 174 (456)
T d1c7ga_ 114 --------------GQYVAGNMYFTTTRF-HQEKN----GATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAEN 174 (456)
T ss_dssp --------------TEEEEESSCCHHHHH-HHHHT----TEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGG
T ss_pred --------------CCeEecCcchHHHHH-HHHHc----CceeeeccccccccccccCCccccCCHHHHHHHhhhcCCcc
Confidence 899998866544332 23333 45444321 238999999998653 34
Q ss_pred cEEEEEcCCCCCCC-Ccc---CHHHHHHHHHHcCCEEEEecCcccccc---c-----CCCcccccc-cCCCCCccEEEec
Q 019931 253 KKVVVTDSLFSMDG-DFA---PMVELVKLRRKYGFLLVLDDAHGTFVC---G-----KNGGGVAEQ-FNCERDVDICVGT 319 (334)
Q Consensus 253 ~~lVv~e~v~n~~G-~~~---pL~~L~ela~k~ga~LivDeAh~~Gv~---G-----~~G~g~~~~-~~~~~~~Div~~S 319 (334)
+.+|+++.++|+.| .+. ++++|.++|++||+.|++|+|+.+|.. + ..+....+. -.+...+|+++.|
T Consensus 175 ~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s 254 (456)
T d1c7ga_ 175 IAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMS 254 (456)
T ss_dssp EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEE
T ss_pred ceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEe
Confidence 56888998888765 443 478889999999999999999986531 1 011111100 0011347899999
Q ss_pred CcccccC-CccEEee
Q 019931 320 LSKAAGC-QGGFIAC 333 (334)
Q Consensus 320 lsKa~G~-~GG~i~~ 333 (334)
++|.+++ .||++++
T Consensus 255 ~~K~~~~~~GG~i~~ 269 (456)
T d1c7ga_ 255 GKKDCLVNIGGFLCM 269 (456)
T ss_dssp TTTTTCCSSCEEEEE
T ss_pred ccccccccceeEEEc
Confidence 9999976 5788875
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=7.2e-17 Score=157.24 Aligned_cols=208 Identities=13% Similarity=0.023 Sum_probs=140.7
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhh
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNI 188 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~ 188 (334)
..+||+.|..+.+...+. ..+++ ..| .. .+|..+...+||+++++++|.+++++++||++||+.++++++.+
T Consensus 41 ~~~idl~sd~~t~~~~~~-~~a~~---~~g---d~-~Y~~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~~ 112 (467)
T d2v1pa1 41 DVFIDLLTDSGTGAVTQS-MQAAM---MRG---DE-AFSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKK 112 (467)
T ss_dssp GCSEECSCCTTCSCCCHH-HHHHT---TSC---CC-CSSSCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHHHH
T ss_pred ceeeeccccccchhhHHH-HHhhc---ccc---ch-hhcCCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHhhc
Confidence 567888877655443221 11111 122 22 34556888999999999999999999999999999999999887
Q ss_pred hhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEee---------------CCCHHHHHHHHhcCC-CC
Q 019931 189 ASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYK---------------HCDMSHLKTLLSCCT-MR 252 (334)
Q Consensus 189 ~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~---------------~~D~~~Le~~l~~~~-~~ 252 (334)
+.-.. ...+.+.|.....+|......+.++ |+.+..++ ..|+++||+++++.. ..
T Consensus 113 g~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~----G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~ 183 (467)
T d2v1pa1 113 REQEK-----GLDRSKMVAFSNYFFDTTQGHSQIN----GCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNN 183 (467)
T ss_dssp HHHHH-----CCCTTTCEEEESSCCHHHHHHHHHT----TCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGG
T ss_pred cceEe-----cCCCCcEEEEecccccccHHHHHHc----CCeeeecccccccccccccccccCCCHHHHHHHHhhcCccc
Confidence 53110 1112444555566676666666666 77766543 238899999998653 34
Q ss_pred cEEEEEcCCCCCCC-Ccc---CHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccC---------CCCCccEEEec
Q 019931 253 KKVVVTDSLFSMDG-DFA---PMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFN---------CERDVDICVGT 319 (334)
Q Consensus 253 ~~lVv~e~v~n~~G-~~~---pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~---------~~~~~Div~~S 319 (334)
+++|+++.+++..| .+. ++++|+++|++||++||+|+||.+|.....+.....+.+ +...+|++..|
T Consensus 184 ~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s 263 (467)
T d2v1pa1 184 VPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMS 263 (467)
T ss_dssp CCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEE
T ss_pred cceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEec
Confidence 67899999988765 333 488999999999999999999987642111111111111 12356899999
Q ss_pred CcccccC-CccEEee
Q 019931 320 LSKAAGC-QGGFIAC 333 (334)
Q Consensus 320 lsKa~G~-~GG~i~~ 333 (334)
++|.+++ .||++++
T Consensus 264 ~~K~~~~~~gg~i~~ 278 (467)
T d2v1pa1 264 AKKDAMVPMGGLLCM 278 (467)
T ss_dssp SSSTTCCSSCEEEEE
T ss_pred CCCCCCCCCceeEEe
Confidence 9999965 6777765
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2e-15 Score=144.85 Aligned_cols=203 Identities=13% Similarity=0.093 Sum_probs=143.8
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC-C--CCccccccCchHHHHHHHHHHHhHhCCC-----cEEEeccHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM-G--PRGSALICGYTNYHRLLESCLADLKKKE-----DCLLCPTGFAANMA 180 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~-g--~~~sr~~~G~~~~~~~LE~~La~~~g~e-----~alv~~sG~~An~~ 180 (334)
+++||++.++ .++..++.+++++.+.-. + ..+|....|..++.+.+.+.+.+.+|.+ .+++++++++|+..
T Consensus 25 ~dvI~l~~G~-p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~ 103 (418)
T d1w7la_ 25 HDVVNLGQGF-PDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFT 103 (418)
T ss_dssp SCCEECCCCS-CSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHH
T ss_pred CCCEECCCCC-CCCCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHH
Confidence 6789998887 478788889998876543 2 1235556677677777777777766642 47777888899999
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----------------CHHHHH
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----------------DMSHLK 243 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----------------D~~~Le 243 (334)
++.+++.+ ||.|++..+.+..+...+... +++++.++.. |.++++
T Consensus 104 ~~~~l~~~--------------g~~vlv~~p~~~~y~~~~~~~----g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 165 (418)
T d1w7la_ 104 AFQALVDE--------------GDEVIIIEPFFDCYEPMTMMA----GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELA 165 (418)
T ss_dssp HHHHHCCT--------------TCEEEEEESCCTTHHHHHHHT----TCEEEEEECEECC---CCSEEGGGEECCHHHHH
T ss_pred HHHhhccC--------------CceeeccccccchhHHHHHHc----CCEeeccccccccccccccccccCcccchhhhh
Confidence 99998875 777887777777777666666 6776665421 233333
Q ss_pred HHHhcCCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCc-ccccccCCCCCccEEEec
Q 019931 244 TLLSCCTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGG-GVAEQFNCERDVDICVGT 319 (334)
Q Consensus 244 ~~l~~~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~-g~~~~~~~~~~~Div~~S 319 (334)
. ...+++++|++.+++||+|.+.+ +++|.++|++|++++|.||+|..-.++..-. ......+. .+..|++.|
T Consensus 166 ~---~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~-~~~~i~~~S 241 (418)
T d1w7la_ 166 G---KFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGM-WERTLTIGS 241 (418)
T ss_dssp H---HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTT-GGGEEEEEE
T ss_pred c---cccccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHcccc-ccccceecc
Confidence 3 22347899999999999998876 6788999999999999999998765543211 11111111 223488999
Q ss_pred CcccccCCc---cEEeeC
Q 019931 320 LSKAAGCQG---GFIACR 334 (334)
Q Consensus 320 lsKa~G~~G---G~i~~~ 334 (334)
+||.++..| ||++++
T Consensus 242 ~SK~~~~pG~RvG~~v~~ 259 (418)
T d1w7la_ 242 AGKTFSATGWKVGWVLGP 259 (418)
T ss_dssp HHHHTTCGGGCCEEEECC
T ss_pred cCccccCCCCcccccccc
Confidence 999998766 888764
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.66 E-value=8.9e-16 Score=144.68 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC
Q 019931 150 NYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK 227 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~ 227 (334)
...+++++.||+++|++ +++++++|++|+..++.++..+ +||.|++....|.+....++......
T Consensus 50 ~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~~~-------------~g~~i~~~~~~~~s~~~~~~~~~~~~ 116 (381)
T d1elua_ 50 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWH-------------QGDEILLTDCEHPGIIAIVQAIAARF 116 (381)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCC-------------TTCEEEEETTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhhhc-------------CCceEEEeccccceeeeccccccccc
Confidence 55678999999999964 5778889999998888876432 47888888899998777665433333
Q ss_pred CcEEEEeeCC---CHHHHHHHHh-cCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHc----CCEEEEecCcccccccCC
Q 019931 228 MVEVFVYKHC---DMSHLKTLLS-CCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKY----GFLLVLDDAHGTFVCGKN 299 (334)
Q Consensus 228 g~~v~~~~~~---D~~~Le~~l~-~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~----ga~LivDeAh~~Gv~G~~ 299 (334)
|+++..++.+ +.++.++.++ ..++++++|++.+++|++|.+.|+++|.++|+++ ++++++|.+|+.|..
T Consensus 117 g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~--- 193 (381)
T d1elua_ 117 GITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSL--- 193 (381)
T ss_dssp CCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTB---
T ss_pred cccccccccccccccchHHHHHHhhhcccccccccccccccccccchhhHHHHHHhhcccccccccccccccccccc---
Confidence 7888888753 2222333332 2345899999999999999999999999999984 699999999997632
Q ss_pred CcccccccCC-CCCccEEEecCcccccC-Cc-cEE
Q 019931 300 GGGVAEQFNC-ERDVDICVGTLSKAAGC-QG-GFI 331 (334)
Q Consensus 300 G~g~~~~~~~-~~~~Div~~SlsKa~G~-~G-G~i 331 (334)
.+.+ ..++|++++|++|.+++ .| |++
T Consensus 194 ------~~~~~~~~~D~~~~s~~K~~~~p~G~g~l 222 (381)
T d1elua_ 194 ------PLDFSRLEVDYYAFTGHKWFAGPAGVGGL 222 (381)
T ss_dssp ------CCCTTTSCCSEEEEESSSTTCCCTTCEEE
T ss_pred ------cccccccccccccccccccccccchhhHH
Confidence 1222 24689999999999975 34 444
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.66 E-value=1.9e-15 Score=141.40 Aligned_cols=193 Identities=15% Similarity=0.109 Sum_probs=123.4
Q ss_pred eeEEEeecC-ccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHH
Q 019931 109 KRLLLFSGN-DYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAV 185 (334)
Q Consensus 109 ~~~l~f~sn-~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al 185 (334)
.++|||++| +.+|. +|.+++++.+.......|+ ..+ ..+|++.||++++.+ .+++++++..++..++.++
T Consensus 22 ~~~idls~~~np~~~--p~~~~~a~~~~~~~~~~Yp-~~~----~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~ 94 (355)
T d1lc5a_ 22 DQLLDFSANINPLGM--PVSVKRALIDNLDCIERYP-DAD----YFHLHQALARHHQVPASWILAGNGETESIFTVASGL 94 (355)
T ss_dssp GGSEECSSCCCTTCC--CHHHHHHHHHTGGGGGSCC-CTT----CHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH
T ss_pred hheEEccCCCCCCCC--CHHHHHHHHHHHHHhccCC-CCC----hHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhh
Confidence 468999998 67775 6889998876432211121 111 257999999999964 4666666666666555443
Q ss_pred hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC------CHHHHHHHHhcCCCCcEEEEEc
Q 019931 186 GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC------DMSHLKTLLSCCTMRKKVVVTD 259 (334)
Q Consensus 186 ~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~e 259 (334)
.. ++++|..+.+. ......... +.+++.++.. ..+.+++.+ .+++++|++.
T Consensus 95 ~~--------------~~~~v~~p~~~--~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~v~l~ 151 (355)
T d1lc5a_ 95 KP--------------RRAMIVTPGFA--EYGRALAQS----GCEIRRWSLREADGWQLTDAILEAL---TPDLDCLFLC 151 (355)
T ss_dssp CC--------------SEEEEEESCCT--HHHHHHHHT----TCEEEEEECCGGGTTCCCTTHHHHC---CTTCCEEEEE
T ss_pred cc--------------ccccccCCccc--eeccccccc----cccceeeeeeccCCccceeeeeecc---ccccceeeee
Confidence 22 24555544333 233333333 5666666532 123344433 3478899999
Q ss_pred CCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEee
Q 019931 260 SLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 260 ~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
+++||+|.+.+ +.+|+++|++|++++|+||+|...+. .+........ ..+..|++.||||+||+.| ||+++
T Consensus 152 nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~--~~~~~~~~~~-~~~~~i~~~S~SK~~~l~GlR~G~~i~ 228 (355)
T d1lc5a_ 152 TPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIP--HETGFIPALK-DNPHIWVLRSLTKFYAIPGLRLGYLVN 228 (355)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGST--TCCCSGGGCT-TCTTEEEEEESTTTTTCTTTCCEEEEC
T ss_pred cccCcccccchhhhhhhhhhhccccccccccccceeeeee--eccccccccc-ccccceeecccccccccccccccceec
Confidence 99999999888 66788899999999999999986432 2222221111 2233589999999999877 99886
Q ss_pred C
Q 019931 334 R 334 (334)
Q Consensus 334 ~ 334 (334)
+
T Consensus 229 ~ 229 (355)
T d1lc5a_ 229 S 229 (355)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.64 E-value=4.4e-15 Score=141.18 Aligned_cols=207 Identities=17% Similarity=0.099 Sum_probs=134.8
Q ss_pred eeEEEeecCcc-CCCCCCHHHHHHHHHhc----CCCCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHHHHH
Q 019931 109 KRLLLFSGNDY-LGLSSHPTIAKAAARHG----MGPRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFAANM 179 (334)
Q Consensus 109 ~~~l~f~sn~y-Lgl~~~p~v~~a~~~~g----~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~An~ 179 (334)
.++|||++... .-+-..+.+++++++.. .....|....|..++.+.+.+.+.+.+| .+++++++++++++.
T Consensus 29 ~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~ 108 (403)
T d1wsta1 29 SDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALD 108 (403)
T ss_dssp SSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHH
T ss_pred CCcEECCCCCCCccccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHH
Confidence 56889877531 01111234555554421 1112233355655555556666555554 366888899999999
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC----CHHHHH----HHHhcCCC
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC----DMSHLK----TLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~----D~~~Le----~~l~~~~~ 251 (334)
.++.+++.+ ||.|++..+.+......+... +++++.++.+ +...++ ....+.++
T Consensus 109 ~~~~~l~~~--------------gd~v~~~~P~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (403)
T d1wsta1 109 LIGRVFLNP--------------GDPIVVEAPTYLAAIQAFKYY----DPEFISIPLDDKGMRVDLLEEKLEELRKQGKR 170 (403)
T ss_dssp HHHHHHCCT--------------TCEEEEEESCCHHHHHHHHTT----CCEEEEEEEETTEECHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhhc--------------CCccccCCCcchhhhHHHhhc----cccceeEeecccCCccccccccchhhhhcccc
Confidence 999988765 788888888888887777766 7777777643 333332 33333334
Q ss_pred CcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccccc--C
Q 019931 252 RKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAG--C 326 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G--~ 326 (334)
.+.+++..+++||+|.+.+ +++|+++|++|+++||+||+|....++..-........ ..+..++++||||.++ .
T Consensus 171 ~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~G~ 249 (403)
T d1wsta1 171 VKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFD-DYGRVIYLGTFSKILAPGF 249 (403)
T ss_dssp CCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGC-SSSCEEEEEESTTTTCGGG
T ss_pred ccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccC-CCCcEEEEccccceecCcc
Confidence 5678888999999998877 66788999999999999999987555422111111111 2334689999999995 2
Q ss_pred CccEEeeC
Q 019931 327 QGGFIACR 334 (334)
Q Consensus 327 ~GG~i~~~ 334 (334)
..||++++
T Consensus 250 RiG~~i~~ 257 (403)
T d1wsta1 250 RIGWVAAH 257 (403)
T ss_dssp CCEEEEEC
T ss_pred cccccccc
Confidence 44888764
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=3.9e-15 Score=141.03 Aligned_cols=204 Identities=14% Similarity=0.101 Sum_probs=146.5
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHH-hcCCCCccccccCchHHHHHHHHHHHhHhCC----C-cEEEeccHHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAAR-HGMGPRGSALICGYTNYHRLLESCLADLKKK----E-DCLLCPTGFAANMAVI 182 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~-~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~----e-~alv~~sG~~An~~ai 182 (334)
++.|||+..+ -++..++.+++++.+ ...+..+|....|..++.+.+.+.+.+.+|. + .+++++++.+|+..++
T Consensus 26 ~~~i~l~~G~-Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~ 104 (382)
T d1u08a_ 26 HQAINLSQGF-PDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAI 104 (382)
T ss_dssp TTCEECCCSS-CSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHH
T ss_pred CCCEEccCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHH
Confidence 5779999886 477788888887643 3445556667778777777777777777662 3 4788899999999999
Q ss_pred HHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC------CCHHHHHHHHhcCCCCcEEE
Q 019931 183 VAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH------CDMSHLKTLLSCCTMRKKVV 256 (334)
Q Consensus 183 ~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~------~D~~~Le~~l~~~~~~~~lV 256 (334)
.+++.+ ||.|+...+.+.......... ++.+..++. .|++++++.+.+ ++++|
T Consensus 105 ~~l~~~--------------gd~vl~~~p~y~~~~~~~~~~----g~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~i 163 (382)
T d1u08a_ 105 TALVRN--------------GDEVICFDPSYDSYAPAIALS----GGIVKRMALQPPHFRVDWQEFAALLSE---RTRLV 163 (382)
T ss_dssp HHHCCT--------------TCEEEEEESCCTTHHHHHHHT----TCEEEEEECCTTTCCCCHHHHHHHCCT---TEEEE
T ss_pred hhcccc--------------cceEEEecccccchhhhhhhc----cccceecccccccccCCHHHHhhhhcc---CccEE
Confidence 998875 777887777766666666555 665555543 267777776654 78899
Q ss_pred EEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cE
Q 019931 257 VTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GF 330 (334)
Q Consensus 257 v~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~ 330 (334)
++.+++||+|.+.+ +++|.++|++++++++.|+.+....+.....-.........+..|++.|+||.++..| ||
T Consensus 164 ~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~ 243 (382)
T d1u08a_ 164 ILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGY 243 (382)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEE
T ss_pred EECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchh
Confidence 99999999999887 5667788889999999999998765432111111011111223489999999998766 88
Q ss_pred EeeC
Q 019931 331 IACR 334 (334)
Q Consensus 331 i~~~ 334 (334)
++++
T Consensus 244 ~v~~ 247 (382)
T d1u08a_ 244 CVAP 247 (382)
T ss_dssp EECC
T ss_pred hhcc
Confidence 8764
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.62 E-value=5.3e-15 Score=139.49 Aligned_cols=162 Identities=17% Similarity=0.224 Sum_probs=122.7
Q ss_pred ccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhh
Q 019931 145 ICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224 (334)
Q Consensus 145 ~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~ 224 (334)
+++..+..++||+++++++|.+++++++||++|+..++.++-- ++||.|++....+.+....+...
T Consensus 16 ~~~~G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~-------------~~gdeVi~p~~t~~a~~~~~~~~- 81 (374)
T d1o69a_ 16 IAPLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGV-------------KQDDIVLASSFTFIASVAPICYL- 81 (374)
T ss_dssp TSCTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCGGGTHHHHHT-
T ss_pred cCCCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCC-------------CCcCEEEeCCcchHhhHHHHhhc-
Confidence 4444588899999999999999999999999999999998632 24889999999999988888887
Q ss_pred hcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCC
Q 019931 225 RTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKN 299 (334)
Q Consensus 225 ~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~ 299 (334)
|++++.++.+ +....+........++++|++.+.+ |.++++++|.++|+++|+.||.|.||++|..- .
T Consensus 82 ---g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~~~~---G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~-~ 154 (374)
T d1o69a_ 82 ---KAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHLY---GNAAKMDEIVEICKENDIVLIEDAAEALGSFY-K 154 (374)
T ss_dssp ---TCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECGG---GCCCCHHHHHHHHHHTTCEEEEECTTCTTCEE-T
T ss_pred ---cceeEecccccccccccccccccchhcccccccccccccc---cchhhhHHHHHHhhccCcchhhhhhhhhcceE-C
Confidence 8998888754 2223333333333467888876655 66999999999999999999999999987531 1
Q ss_pred CcccccccCCCCCccEEEecC--cccccC-CccEEee
Q 019931 300 GGGVAEQFNCERDVDICVGTL--SKAAGC-QGGFIAC 333 (334)
Q Consensus 300 G~g~~~~~~~~~~~Div~~Sl--sKa~G~-~GG~i~~ 333 (334)
|.. .|- --|+.+.|| +|.+++ .||++++
T Consensus 155 ~~~----~G~--~gd~~~fSf~~~K~l~tgeGG~i~t 185 (374)
T d1o69a_ 155 NKA----LGT--FGEFGVYSYNGNKIITTSGGGMLIG 185 (374)
T ss_dssp TEE----TTS--SSSEEEEECCTTSSSCCSSCEEEEE
T ss_pred Cee----cCC--CCceEEEeccCccccccccceeehh
Confidence 221 121 126888888 588865 5677765
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.62 E-value=1.7e-15 Score=144.27 Aligned_cols=156 Identities=18% Similarity=0.138 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..+++|+++|+++|.++|++++||++|++.+++++.- ++||.|++....+.+...++... |
T Consensus 33 g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~-------------~~gdeVi~p~~t~~a~~~ai~~~----g 95 (384)
T d1b9ha_ 33 GDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGV-------------GPGTEVIVPAFTFISSSQAAQRL----G 95 (384)
T ss_dssp CSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTC-------------CTTCEEEEESSSCTHHHHHHHHT----T
T ss_pred CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCC-------------CCCCEEEEecccccccccccccc----c
Confidence 467799999999999999999999999999999998632 14888999999999999888877 8
Q ss_pred cEEEEeeCC------CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcc
Q 019931 229 VEVFVYKHC------DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG 302 (334)
Q Consensus 229 ~~v~~~~~~------D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g 302 (334)
++++.++.+ |++.+++.+.. ++++|++.++ .|..+++++|.++|++++++||.|.||+.|..- .|..
T Consensus 96 ~~p~~~d~~~~~~~~d~~~~~~~i~~---~tk~i~~~~~---~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~-~g~~ 168 (384)
T d1b9ha_ 96 AVTVPVDVDAATYNLDPEAVAAAVTP---RTKVIMPVHM---AGLMADMDALAKISADTGVPLLQDAAHAHGARW-QGKR 168 (384)
T ss_dssp CEEEEECBCTTTCCBCHHHHHHHCCT---TEEEECCBCG---GGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEE-TTEE
T ss_pred cccccccccccccccchhhhcccccc---cccccccccc---cccccccccchhhhhhhhhhhhhhhceeccccc-CCEe
Confidence 888877632 78888887754 7888876554 466999999999999999999999999987642 1322
Q ss_pred cccccCCCCCccEEEecC--cccccC-CccEEeeC
Q 019931 303 VAEQFNCERDVDICVGTL--SKAAGC-QGGFIACR 334 (334)
Q Consensus 303 ~~~~~~~~~~~Div~~Sl--sKa~G~-~GG~i~~~ 334 (334)
. |-.. |+.+.|| +|.+++ .||+|+++
T Consensus 169 ~----g~~g--~~~~~Sf~~~K~i~~g~GG~i~t~ 197 (384)
T d1b9ha_ 169 V----GELD--SIATFSFQNGKLMTAGEGGAVVFP 197 (384)
T ss_dssp G----GGSS--SCEEEECCTTSSSCSSSCEEEEEC
T ss_pred c----Cccc--ccceecccccccccccccchhhhh
Confidence 1 2122 4555566 899854 68888763
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.62 E-value=2e-14 Score=135.19 Aligned_cols=193 Identities=12% Similarity=0.101 Sum_probs=137.6
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcC---CCCccccccC--chHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGM---GPRGSALICG--YTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAV 181 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~---g~~~sr~~~G--~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~a 181 (334)
|-|+|.++.. ..++.|++++.++-. +...+....+ .....++.++++++++|++ ++++.+++++++..+
T Consensus 2 ~iyld~a~~~----~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~ 77 (376)
T d1eg5a_ 2 RVYFDNNATT----RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWI 77 (376)
T ss_dssp CEECBTTTCC----CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHH
T ss_pred EEEEECcccc----cCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhh
Confidence 4455544422 246788887765421 1111111111 1344567788999999975 577778889988888
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcEEE
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKKVV 256 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~lV 256 (334)
+.++.... ..++++|++....|.+.....+..... |++++.++.+ |++++++++++ +|++|
T Consensus 78 ~~~~~~~~----------~~~g~~v~~~~~~~~~~~~~~~~~~~~-g~~v~~vp~~~~~~id~~~l~~~i~~---~t~lv 143 (376)
T d1eg5a_ 78 LKTVAETF----------EKRKRTIITTPIEHKAVLETMKYLSMK-GFKVKYVPVDSRGVVKLEELEKLVDE---DTFLV 143 (376)
T ss_dssp HHHHHHHT----------TTTCCEEEECTTSCHHHHHHHHHHHHT-TCEEEECCBCTTSCBCHHHHHHHCCT---TEEEE
T ss_pred hhcccccc----------cccCcccccccccchhhHHHHHHHHhc-CCEEEEEcCCCCCeECHHHHHHhcCC---CceEE
Confidence 77654320 124788888888888877666655333 7888888743 78888888864 89999
Q ss_pred EEcCCCCCCCCccCHHHHHHHHHHc--CCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccccCCc
Q 019931 257 VTDSLFSMDGDFAPMVELVKLRRKY--GFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 257 v~e~v~n~~G~~~pL~~L~ela~k~--ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~G~~G 328 (334)
++.++++++|.+.|++++.++++.+ ++++++|.+|..|.+. ..+ ..++|++++|++|.+|+.|
T Consensus 144 ~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~---------~d~~~~~~D~~~~s~~K~~gp~G 209 (376)
T d1eg5a_ 144 SIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIP---------FSLEKLEVDYASFSAHKFHGPKG 209 (376)
T ss_dssp EEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSC---------CCCTTTCCSEEEEEGGGGTSCTT
T ss_pred EEECCccccceeeeehhhhhhhhhcccCceeEEEeeecccccc---------ccccccCccceecccceeecCCC
Confidence 9999999999999999999998665 8999999999987542 122 2457999999999998877
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.61 E-value=6.8e-15 Score=141.71 Aligned_cols=173 Identities=17% Similarity=0.177 Sum_probs=122.7
Q ss_pred ccCchHHHHHHHHHHHhHhC------CCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHH
Q 019931 145 ICGYTNYHRLLESCLADLKK------KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIID 218 (334)
Q Consensus 145 ~~G~~~~~~~LE~~La~~~g------~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~ 218 (334)
..|..++.+++.+.+.+++| .+++++++++++|+..++.+++++ ||.|++..+.|.....
T Consensus 83 ~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~p--------------Gd~Vlv~~P~y~~~~~ 148 (431)
T d1m7ya_ 83 YHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADP--------------GEAVLIPTPYYPGFDR 148 (431)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCT--------------TCEEEEEESCCTTHHH
T ss_pred CcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCC--------------CCEEEEeCCCchhHHH
Confidence 44555555555555555544 246888888899999999998875 7888888888877766
Q ss_pred HHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcC---CCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEE
Q 019931 219 GIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCC---TMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLL 285 (334)
Q Consensus 219 g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~---~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~L 285 (334)
.+.+.. +++++.++.. |++.+++.+.+. ..++++|++.+++||+|.+.+ +++|.++|++||+++
T Consensus 149 ~~~~~~---g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~v 225 (431)
T d1m7ya_ 149 DLKWRT---GVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHL 225 (431)
T ss_dssp HTTTTT---CCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEE
T ss_pred HHHHhc---CceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcce
Confidence 665432 6787777632 778888777542 346789999999999998877 778899999999999
Q ss_pred EEecCcccccccCCCc-cccc---ccCC-----CCCccEEEecCcccccCCc---cEEeeC
Q 019931 286 VLDDAHGTFVCGKNGG-GVAE---QFNC-----ERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 286 ivDeAh~~Gv~G~~G~-g~~~---~~~~-----~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
|+||+|+..+++.... .+.+ .... ..+..|++.||||.||..| |+++++
T Consensus 226 I~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~ 286 (431)
T d1m7ya_ 226 ISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSN 286 (431)
T ss_dssp EEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEES
T ss_pred eecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccc
Confidence 9999999766643211 1111 0000 0122488999999998755 888763
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.61 E-value=1e-14 Score=140.25 Aligned_cols=172 Identities=16% Similarity=0.186 Sum_probs=120.5
Q ss_pred ccCchHHHHHHHHHHHhHhC------CCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHH
Q 019931 145 ICGYTNYHRLLESCLADLKK------KEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIID 218 (334)
Q Consensus 145 ~~G~~~~~~~LE~~La~~~g------~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~ 218 (334)
..|..++.+++.+.+.+.+| .+++++++++++|+..++.+++.+ ||.|++..+.|.....
T Consensus 82 ~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~--------------Gd~Vlv~~P~y~~~~~ 147 (428)
T d1iaya_ 82 YHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADP--------------GDAFLVPSPYYPAFNR 147 (428)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCT--------------TCEEEEESSCCTTHHH
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCC--------------CCEEEEccCCchHHHH
Confidence 34554555555555555444 356788888899999999998875 7889988888887766
Q ss_pred HHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhc---CCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEE
Q 019931 219 GIRIAERTKMVEVFVYKHC-------DMSHLKTLLSC---CTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLL 285 (334)
Q Consensus 219 g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~---~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~L 285 (334)
.+.+.. |++++.++.. |.++++..++. ...++++|++.+++||+|.+.+ +++|.++|++||++|
T Consensus 148 ~~~~~~---g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~v 224 (428)
T d1iaya_ 148 DLRWRT---GVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHL 224 (428)
T ss_dssp HTTTTT---CCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEE
T ss_pred HHHHhc---CCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEE
Confidence 655432 7888877632 67777665432 2357788999999999998877 678999999999999
Q ss_pred EEecCcccccccCCCcc-ccccc------CCCCCccEEEecCcccccCCc---cEEee
Q 019931 286 VLDDAHGTFVCGKNGGG-VAEQF------NCERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 286 ivDeAh~~Gv~G~~G~g-~~~~~------~~~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
|+||+|+..+++..... +.... ....+..+++.||||+|+..| |++++
T Consensus 225 I~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~ 282 (428)
T d1iaya_ 225 VCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYS 282 (428)
T ss_dssp EEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEE
T ss_pred EecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccc
Confidence 99999997766432211 11111 112233588999999997755 77765
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.61 E-value=1.6e-14 Score=138.16 Aligned_cols=200 Identities=17% Similarity=0.157 Sum_probs=136.2
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHh-----cC-CCCccccccCchHHHHHHHHHHHhHhCCC--c-EEEeccHHHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARH-----GM-GPRGSALICGYTNYHRLLESCLADLKKKE--D-CLLCPTGFAANM 179 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~-----g~-g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~-alv~~sG~~An~ 179 (334)
++++-|-.+. .+. .++.|++++.++ +. +++.+....-.....++.++++++++|++ + +++++++++++.
T Consensus 21 ~~~iYld~a~-~~~-~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n 98 (408)
T d1t3ia_ 21 HPLVYLDNAA-TSQ-KPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAIN 98 (408)
T ss_dssp EECEECBTTT-CCC-CCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHH
T ss_pred CCeEEeeCcc-ccC-CCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHH
Confidence 5544443333 233 577788866543 21 11111111111256678889999999973 3 555567777777
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCCCCcE
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~~~~~ 254 (334)
.++.++.... + .+|+.|++....|.+....++......|.++..++.+ |.+.+++++. ++|+
T Consensus 99 ~~~~~~~~~~--~--------~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~~---~~t~ 165 (408)
T d1t3ia_ 99 LVAYSWGMNN--L--------KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLS---EKTK 165 (408)
T ss_dssp HHHHHTHHHH--C--------CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCC---TTEE
T ss_pred HHHhhccccc--c--------CCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhccC---CCce
Confidence 7665532210 0 2478888888899987777764322337777777643 6777777765 4899
Q ss_pred EEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCc-cEEe
Q 019931 255 VVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQG-GFIA 332 (334)
Q Consensus 255 lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~G-G~i~ 332 (334)
+|++..++|.+|.+.|+++|.++|+++|+++++|.+|+.|.+- .++. .++|+++.|.+|-+|+.| |++.
T Consensus 166 lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~---------id~~~~~~D~~~~s~hK~~gp~G~g~l~ 236 (408)
T d1t3ia_ 166 LVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYP---------LDVQLIDCDWLVASGHKMCAPTGIGFLY 236 (408)
T ss_dssp EEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSC---------CCHHHHTCSEEEEEGGGTTSCTTCEEEE
T ss_pred EEEEecccccccccCcHHHHhhhhhccCceeeeccceeccccc---------ccccccCCceEEeccccccCCCCccccc
Confidence 9999999999999999999999999999999999999987431 1222 357999999999988876 5554
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.59 E-value=5.6e-15 Score=143.36 Aligned_cols=209 Identities=13% Similarity=0.081 Sum_probs=132.6
Q ss_pred ccceeEEEeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHH
Q 019931 106 RQFKRLLLFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAV 185 (334)
Q Consensus 106 ~~g~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al 185 (334)
..++.+|||.|..+-+...+ ...+++. .|. . .+|..+...+||+++++++|.+++++++||++||+.+++++
T Consensus 39 ~~~~~~id~~sd~~t~~~~~-~~~a~~~---~gd---~-~y~~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~~~ 110 (465)
T d1ax4a_ 39 PSSAVYIDLLTDSGTNAMSD-HQWAAMI---TGD---E-AYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVL 110 (465)
T ss_dssp CGGGCSEECSCSSSCCCEEH-HHHHHHH---TCC---C-CSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHH
T ss_pred CccCeeeecccccchhhhhH-HHHHHHh---hhh---h-hhccChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHHHH
Confidence 34578899988765443222 2222222 221 1 23446777999999999999999999999999999999999
Q ss_pred hhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEee---------------CCCHHHHHHHHhcCC
Q 019931 186 GNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYK---------------HCDMSHLKTLLSCCT 250 (334)
Q Consensus 186 ~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~---------------~~D~~~Le~~l~~~~ 250 (334)
++++.-. .. .+..++.....|.+....+... +...+... ..|+++|++++++..
T Consensus 111 ~~~g~~~------~~-~~~~~i~~~~h~~t~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~ 179 (465)
T d1ax4a_ 111 LKYKQKE------GK-AKNPVFISNFHFDTTAAHVELN----GCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG 179 (465)
T ss_dssp HHHHHHT------TC-CSSCEEEESSCCHHHHHHHHHT----TCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC
T ss_pred HHHHHhc------CC-CCCeEEeccchhhhhHHHHHHc----CCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhc
Confidence 8764211 11 1223344444444444444444 55554331 138999999998643
Q ss_pred C-CcEEEEEcCCCCCCC-CccC---HHHHHHHHHHcCCEEEEecCccccccc----CCC----cccccc-cCCCCCccEE
Q 019931 251 M-RKKVVVTDSLFSMDG-DFAP---MVELVKLRRKYGFLLVLDDAHGTFVCG----KNG----GGVAEQ-FNCERDVDIC 316 (334)
Q Consensus 251 ~-~~~lVv~e~v~n~~G-~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G----~~G----~g~~~~-~~~~~~~Div 316 (334)
+ .+.+++.+.+++..| .+.| |++|+++|++||++||+|+||..|... +.+ ....+. ..+....|++
T Consensus 180 ~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~ 259 (465)
T d1ax4a_ 180 ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADAL 259 (465)
T ss_dssp GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEE
T ss_pred cccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhcccccccccee
Confidence 2 456777777777654 3333 788999999999999999999865431 111 111000 0011225788
Q ss_pred EecCcccccC-CccEEee
Q 019931 317 VGTLSKAAGC-QGGFIAC 333 (334)
Q Consensus 317 ~~SlsKa~G~-~GG~i~~ 333 (334)
..|.+|.++. .||++++
T Consensus 260 s~s~~k~~~~~~~g~l~~ 277 (465)
T d1ax4a_ 260 TMSAKKDPLLNIGGLVAI 277 (465)
T ss_dssp EEETTSTTCCSSCEEEEE
T ss_pred EeecccCcccccceeEee
Confidence 8899999876 4567664
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.57 E-value=3.5e-14 Score=135.16 Aligned_cols=204 Identities=13% Similarity=0.070 Sum_probs=135.9
Q ss_pred EEEeecCccCC----CCCCHHHHHHHHHhc-CC-CCccccccCchHHHHHHHHHHHhHhC----CCcEEEe-ccHH----
Q 019931 111 LLLFSGNDYLG----LSSHPTIAKAAARHG-MG-PRGSALICGYTNYHRLLESCLADLKK----KEDCLLC-PTGF---- 175 (334)
Q Consensus 111 ~l~f~sn~yLg----l~~~p~v~~a~~~~g-~g-~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~-~sG~---- 175 (334)
.||++-..|.. ....|.|++|.++.. .+ ..+|....|..++.+++.+.+.+..+ .+..+++ +++.
T Consensus 30 ~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~ 109 (401)
T d7aata_ 30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSL 109 (401)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred cEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHH
Confidence 47887664432 234577888665421 22 23566677776666666666655443 2334333 2222
Q ss_pred HHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhc
Q 019931 176 AANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSC 248 (334)
Q Consensus 176 ~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~ 248 (334)
.++..++++++.+ ||.|++..+.+......+++. |++++.++. .|.+.+++.+..
T Consensus 110 ~~~~~~~~~l~~p--------------Gd~Vlv~~P~y~~y~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (401)
T d7aata_ 110 RVGANFLQRFFKF--------------SRDVYLPKPSWGNHTPIFRDA----GLQLQAYRYYDPKTCSLDFTGAMEDISK 171 (401)
T ss_dssp HHHHHHHHHHCTT--------------CCEEEEEESCCTTHHHHHHHT----TCEEEEEECEETTTTEECHHHHHHHHTT
T ss_pred HHHHHhhHhhcCC--------------CceEEEecCCCcchhhHHHHc----CCeEEEEeccccccccccHHHHHHHHhc
Confidence 3455556666664 888888888877877777777 888888874 267777777765
Q ss_pred CCCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccc---cccCCCCCccEEEecCcc
Q 019931 249 CTMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA---EQFNCERDVDICVGTLSK 322 (334)
Q Consensus 249 ~~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~---~~~~~~~~~Div~~SlsK 322 (334)
..++++++++.+++||+|.+.+ +++|+++|++|++++|.||+|....++....... ........ -+++.|+||
T Consensus 172 ~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~s~sk 250 (401)
T d7aata_ 172 IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID-VVLSQSYAK 250 (401)
T ss_dssp SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC-CEEEEECTT
T ss_pred CCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcc-cceeEeccc
Confidence 5568899999999999999887 6789999999999999999999766643111111 11111122 377889999
Q ss_pred cccCCc---cEEee
Q 019931 323 AAGCQG---GFIAC 333 (334)
Q Consensus 323 a~G~~G---G~i~~ 333 (334)
.+++.| |++++
T Consensus 251 ~~~~~G~RiG~~~~ 264 (401)
T d7aata_ 251 NMGLYGERAGAFTV 264 (401)
T ss_dssp TSCCGGGCEEEEEE
T ss_pred cceeeccccceeec
Confidence 999877 77764
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.56 E-value=1.8e-14 Score=136.01 Aligned_cols=158 Identities=14% Similarity=0.124 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHhHhCCCcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCC
Q 019931 149 TNYHRLLESCLADLKKKEDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKM 228 (334)
Q Consensus 149 ~~~~~~LE~~La~~~g~e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g 228 (334)
.+..++||+++++++|.++|++++||++|+..++.++.-. .++++.|++....+.+...++..+ |
T Consensus 30 G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~-----------~~~~~eVi~p~~t~~a~~~ai~~~----G 94 (371)
T d2fnua1 30 GKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEF-----------SADRNEIITTPISFVATANMLLES----G 94 (371)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCC-----------CTTSCEEEECSSSCTHHHHHHHHT----T
T ss_pred CHHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhccc-----------CCCCCeeecccccccccceeeecc----C
Confidence 5788999999999999999999999999999999986532 123568999999999998888877 8
Q ss_pred cEEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCccc
Q 019931 229 VEVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV 303 (334)
Q Consensus 229 ~~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~ 303 (334)
++++.++.+ +.+++++.+. +++++|++-+.+ |..+++++|.++|+++|++||.|.||++|..-. |..
T Consensus 95 ~~pv~vDi~~~~~~~~~~~~~~~~---~~t~avi~vh~~---G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~-~~~- 166 (371)
T d2fnua1 95 YTPVFAGIKNDGNIDELALEKLIN---ERTKAIVSVDYA---GKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQ-NKK- 166 (371)
T ss_dssp CEEEECCBCTTSSBCGGGSGGGCC---TTEEEEEEECGG---GCCCCHHHHHHHHHHHTCEEEEECTTCTTCEET-TEE-
T ss_pred cccccccccccccccchhhhhhcc---chhhcccccccc---ccccccccccccccccchhhccchhhccCceec-ccc-
Confidence 999888743 4455555443 478888866554 779999999999999999999999999875311 211
Q ss_pred ccccCCCCCccEEEecC--cccccC-CccEEeeC
Q 019931 304 AEQFNCERDVDICVGTL--SKAAGC-QGGFIACR 334 (334)
Q Consensus 304 ~~~~~~~~~~Div~~Sl--sKa~G~-~GG~i~~~ 334 (334)
.|-.. |+.+.|| +|.+.+ .||+|+++
T Consensus 167 ---~G~~g--~~~~~Sf~~~K~l~~g~GG~i~t~ 195 (371)
T d2fnua1 167 ---VGGFA--LASVFSFHAIKPITTAEGGAVVTN 195 (371)
T ss_dssp ---TTSSS--SEEEEECCTTSSSCCSSCEEEEES
T ss_pred ---CCccc--cccccccccccccccccceEEEee
Confidence 12122 4667777 899855 57888763
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=2.2e-14 Score=137.16 Aligned_cols=207 Identities=15% Similarity=0.085 Sum_probs=138.3
Q ss_pred ceeEEEeecCccCCCC--CCHHHHHHHHH----hcCCCCccccccCchHHHHHHHHHHHhHhCC-----CcEEEeccHHH
Q 019931 108 FKRLLLFSGNDYLGLS--SHPTIAKAAAR----HGMGPRGSALICGYTNYHRLLESCLADLKKK-----EDCLLCPTGFA 176 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~--~~p~v~~a~~~----~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~-----e~alv~~sG~~ 176 (334)
++++|||+.... ... -.+.+++++++ ......+|....|..++.+.+.+.+.+..|. +.+++++++++
T Consensus 37 ~~~~I~l~~G~P-d~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~ 115 (420)
T d1vp4a_ 37 DKDAISFGGGVP-DPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ 115 (420)
T ss_dssp STTCEECCCCSC-CGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred CCCcEecCCcCC-CCccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhh
Confidence 367899987421 111 12344554433 2222223445667777777777777766553 45788888899
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC----CHHHHHHHHhcC---
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC----DMSHLKTLLSCC--- 249 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~----D~~~Le~~l~~~--- 249 (334)
|+..++.+++.+ ||.|++..+.+......++.. +++++.++.. |++.++..+.+.
T Consensus 116 al~~~~~~~~~~--------------Gd~Vlv~~P~y~~~~~~~~~~----g~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 177 (420)
T d1vp4a_ 116 ALDLIGKLFLDD--------------ESYCVLDDPAYLGAINAFRQY----LANFVVVPLEDDGMDLNVLERKLSEFDKN 177 (420)
T ss_dssp HHHHHHHHHCCT--------------TCEEEEEESCCHHHHHHHHTT----TCEEEEEEEETTEECHHHHHHHHHHHHHT
T ss_pred hHHHHHHhhhcc--------------ccccccccccccchhHHHHHH----hhhcccccccccccccchhhhhhhhhHHH
Confidence 999999888765 788888888888887777766 7888777643 677766654321
Q ss_pred ---CCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCccc
Q 019931 250 ---TMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKA 323 (334)
Q Consensus 250 ---~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa 323 (334)
+..++++++.+++||+|.+.+ +++|+++|++|++++|+||+|....++........... .++..++++|++|.
T Consensus 178 ~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~-~~~~~i~~~s~sk~ 256 (420)
T d1vp4a_ 178 GKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG-GPERVVLLNTFSKV 256 (420)
T ss_dssp TCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH-CTTTEEEEEESTTT
T ss_pred hhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccc-cccceeEEeccccc
Confidence 124567788999999998876 67899999999999999999987655432211111111 24445788889998
Q ss_pred cc--CCccEEeeC
Q 019931 324 AG--CQGGFIACR 334 (334)
Q Consensus 324 ~G--~~GG~i~~~ 334 (334)
++ ..-||++++
T Consensus 257 ~~~G~RiG~~~~~ 269 (420)
T d1vp4a_ 257 LAPGLRIGMVAGS 269 (420)
T ss_dssp TCGGGCEEEEECC
T ss_pred ccccccccccccc
Confidence 74 233888764
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.54 E-value=2.5e-14 Score=137.40 Aligned_cols=152 Identities=10% Similarity=-0.006 Sum_probs=113.0
Q ss_pred HHHHhHhCCCcE--EEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEe
Q 019931 157 SCLADLKKKEDC--LLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVY 234 (334)
Q Consensus 157 ~~La~~~g~e~a--lv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~ 234 (334)
..+++++|.+.+ +++.++++++.+++.++... .+++.|++++..|.++..++.+. +.+.+.+
T Consensus 120 ~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~------------~~~~~vi~s~~~H~s~~k~~~~~----g~~~~~v 183 (434)
T d2z67a1 120 ESFFKQLGLNVHAIATPISTGMSISLCLSAARKK------------YGSNVVIYPYASHKSPIKAVSFV----GMNMRLV 183 (434)
T ss_dssp HHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHH------------HCCCEEEEECCCCHHHHHHHHHT----TCEEEEE
T ss_pred HHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHh------------hcCceEEEeccCCHHHHHHHHHh----CCcceEE
Confidence 446677786553 34466667777888776432 13678999999999999999887 6666655
Q ss_pred e--------CCCHHHHHHHHhcC--CCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccc
Q 019931 235 K--------HCDMSHLKTLLSCC--TMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA 304 (334)
Q Consensus 235 ~--------~~D~~~Le~~l~~~--~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~ 304 (334)
+ +.|+++|++++++. ..++.+|++..++++.|.+.|+++|.++|++||++|++|+||+.+... .+ +..
T Consensus 184 ~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~-~~-~~~ 261 (434)
T d2z67a1 184 ETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNY-YL-EKL 261 (434)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHH-HH-HHH
T ss_pred EeecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhh-cc-ccc
Confidence 4 35999999999863 236788999999999999999999999999999999999999865311 00 111
Q ss_pred cccCCCCCccEEEecCcccccCC
Q 019931 305 EQFNCERDVDICVGTLSKAAGCQ 327 (334)
Q Consensus 305 ~~~~~~~~~Div~~SlsKa~G~~ 327 (334)
... ...++|++++|++|++++.
T Consensus 262 ~~~-~~~~~D~~~~s~hK~l~~~ 283 (434)
T d2z67a1 262 KKA-FKYRVDAVVSSSDKNLLTP 283 (434)
T ss_dssp HHH-HTSCCSEEEEEHHHHHCCC
T ss_pred ccc-ccCCcceEEEcCccccccC
Confidence 111 1246899999999999763
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.51 E-value=1.8e-13 Score=129.60 Aligned_cols=207 Identities=14% Similarity=0.115 Sum_probs=136.6
Q ss_pred EEEeecCccCC----CCCCHHHHHHHHHhc--CCCCccccccCchHHHHHHHHHHHhHhCC---CcEEEeccHHHHHHHH
Q 019931 111 LLLFSGNDYLG----LSSHPTIAKAAARHG--MGPRGSALICGYTNYHRLLESCLADLKKK---EDCLLCPTGFAANMAV 181 (334)
Q Consensus 111 ~l~f~sn~yLg----l~~~p~v~~a~~~~g--~g~~~sr~~~G~~~~~~~LE~~La~~~g~---e~alv~~sG~~An~~a 181 (334)
.||++-..|.+ ....|.|++|+++.. ....+|....|..++.+++.+.+....+. ...+++++|..+...+
T Consensus 28 ~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 107 (394)
T d2ay1a_ 28 KIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQA 107 (394)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHH
T ss_pred CEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHH
Confidence 37887764433 224578888766532 22235666778777766666666555443 3356666666554444
Q ss_pred HHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCCCcE
Q 019931 182 IVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 182 i~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~~~~ 254 (334)
+..++.. +++|.|+...+.+......++.. |.+++.++.. +.+++++.+....++++
T Consensus 108 ~~~~~~~------------~~gd~V~~p~p~~~~y~~~~~~~----g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (394)
T d2ay1a_ 108 LELARMA------------NPDLRVFVSDPTWPNHVSIMNFM----GLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDM 171 (394)
T ss_dssp HHHHHHH------------CTTCCEEEEESCCHHHHHHHHHH----TCCEEEEECEETTTTEECHHHHHHHHHTCCTTCE
T ss_pred HHHhhhc------------CCceEEEEecccccchHHHHHHc----CCEEEEecccchhcccccchhHHHHHhhcccCcE
Confidence 4333322 24788988888888887777777 7888877642 56777777766656788
Q ss_pred EEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccccCCc--
Q 019931 255 VVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAGCQG-- 328 (334)
Q Consensus 255 lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G~~G-- 328 (334)
++++.+++||+|.+.+ +++|+++|++|++++|.||+|....++....-.. ..........+++.|+||.++..|
T Consensus 172 i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R 251 (394)
T d2ay1a_ 172 VLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRER 251 (394)
T ss_dssp EEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGC
T ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCccc
Confidence 9999999999998887 7789999999999999999999765542111111 111111122367889999998755
Q ss_pred -cEEee
Q 019931 329 -GFIAC 333 (334)
Q Consensus 329 -G~i~~ 333 (334)
|++++
T Consensus 252 ~G~~~~ 257 (394)
T d2ay1a_ 252 TGCLLA 257 (394)
T ss_dssp EEEEEE
T ss_pred ccchhh
Confidence 66654
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=2.7e-13 Score=128.64 Aligned_cols=207 Identities=16% Similarity=0.086 Sum_probs=133.5
Q ss_pred EEEeecCccCC----CCCCHHHHHHHHHhc--CCCCccccccCchHHHHHHHHHHHhHhCC----CcE--EEeccHHHHH
Q 019931 111 LLLFSGNDYLG----LSSHPTIAKAAARHG--MGPRGSALICGYTNYHRLLESCLADLKKK----EDC--LLCPTGFAAN 178 (334)
Q Consensus 111 ~l~f~sn~yLg----l~~~p~v~~a~~~~g--~g~~~sr~~~G~~~~~~~LE~~La~~~g~----e~a--lv~~sG~~An 178 (334)
.||++-..|.+ ....|.|++|.++.. ....+|....|..++.+.+.+.+.+..+. +.. ++.++|..+.
T Consensus 28 kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (396)
T d2q7wa1 28 KINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGAL 107 (396)
T ss_dssp CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHH
T ss_pred cEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHH
Confidence 37887664432 234578888765431 12334666777766666666655554431 222 3344444444
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcCCC
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCCTM 251 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~~~ 251 (334)
..++..+... +++|.|++..+.+......++.. |++++.++.. +...+++.+.+...
T Consensus 108 ~l~~~~l~~~------------~~gd~Vlvp~P~y~~y~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (396)
T d2q7wa1 108 RVAADFLAKN------------TSVKRVWVSNPSWPNHKSVFNSA----GLEVREYAYYDAENHTLDFDALINSLNEAQA 171 (396)
T ss_dssp HHHHHHHHHH------------SCCCEEEEEESCCTHHHHHHHHT----TCEEEEEECEETTTTEECHHHHHHHHTTCCT
T ss_pred HHHHHHHhhc------------ccceEEEEecCCCccchHHHHHc----CCeeEecccccccccccccchHHHHHHHhcc
Confidence 3333333221 24888988888888877777777 8888887642 56666776666556
Q ss_pred CcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccc-cccCCCCCccEEEecCcccccCC
Q 019931 252 RKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA-EQFNCERDVDICVGTLSKAAGCQ 327 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~-~~~~~~~~~Div~~SlsKa~G~~ 327 (334)
++++++..+++||+|.+.+ +++|+++|++|++++|.||+|...+++....... ....-..+..+++.|+||.+++.
T Consensus 172 ~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~ 251 (396)
T d2q7wa1 172 GDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLY 251 (396)
T ss_dssp TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCG
T ss_pred CcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhccccccccccccccccc
Confidence 7899999999999999887 6689999999999999999999765542111111 00000122347888999999887
Q ss_pred c---cEEee
Q 019931 328 G---GFIAC 333 (334)
Q Consensus 328 G---G~i~~ 333 (334)
| ||+++
T Consensus 252 G~R~G~~~~ 260 (396)
T d2q7wa1 252 NERVGACTL 260 (396)
T ss_dssp GGCCEEEEE
T ss_pred CCCcccccc
Confidence 6 88765
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.51 E-value=5.9e-14 Score=134.90 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=113.4
Q ss_pred HHHHHHhHhCCC---cEEEeccHHH-HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcE
Q 019931 155 LESCLADLKKKE---DCLLCPTGFA-ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVE 230 (334)
Q Consensus 155 LE~~La~~~g~e---~alv~~sG~~-An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~ 230 (334)
+.+.+++++|.+ ..+++++|+. ++++++.++... ..+++.|+++...|.++..++++. |.+
T Consensus 99 ~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~-----------~~~~~~vi~~~~~H~s~~~a~~~~----g~~ 163 (445)
T d3bc8a1 99 LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK-----------RPKAKYIIWPRIDQKSCFKSMVTA----GFE 163 (445)
T ss_dssp HHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH-----------CTTCCEEEEECCCCHHHHHHHHHT----TCE
T ss_pred HHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHh-----------CCCCCEEEEcCcccHHHHHHHHHc----CCe
Confidence 334566667753 3566666664 555555554332 123678899999999999999988 777
Q ss_pred EEEeeC--------CCHHHHHHHHhcCC-CCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCc
Q 019931 231 VFVYKH--------CDMSHLKTLLSCCT-MRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGG 301 (334)
Q Consensus 231 v~~~~~--------~D~~~Le~~l~~~~-~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~ 301 (334)
.+.++. .|+++|++++++.. .++.+|++..++++.|.+.|+++|.++|++||++|++|+||+.++.+-...
T Consensus 164 ~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~ 243 (445)
T d3bc8a1 164 PVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHL 243 (445)
T ss_dssp EEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHH
T ss_pred eEEEEeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhcccc
Confidence 665532 39999999997642 367889999999999999999999999999999999999998764321000
Q ss_pred ccccccCCCCCccEEEecCcccccC-Cc-cEEe
Q 019931 302 GVAEQFNCERDVDICVGTLSKAAGC-QG-GFIA 332 (334)
Q Consensus 302 g~~~~~~~~~~~Div~~SlsKa~G~-~G-G~i~ 332 (334)
+.. ..+ ..++|+++.|.+|.+++ .| |++.
T Consensus 244 ~~~-~~~-~~~vd~~~~s~hK~~~~p~g~~~l~ 274 (445)
T d3bc8a1 244 IQQ-GAR-VGRIDAFVQSLDKNFMVPVGGAIIA 274 (445)
T ss_dssp HHH-HHH-HSCCCEEEEEHHHHHSCCSSCEEEE
T ss_pred chh-ccC-cCCcceEEecCccccccCCCCceee
Confidence 000 011 14579999999998865 44 4443
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=6.3e-14 Score=133.22 Aligned_cols=204 Identities=15% Similarity=0.091 Sum_probs=131.7
Q ss_pred EEeecCccCC----CCCCHHHHHHHHHhc---CCCCccccccCchHHHHHHHHHHHhHhC----CCcEEEeccHHH----
Q 019931 112 LLFSGNDYLG----LSSHPTIAKAAARHG---MGPRGSALICGYTNYHRLLESCLADLKK----KEDCLLCPTGFA---- 176 (334)
Q Consensus 112 l~f~sn~yLg----l~~~p~v~~a~~~~g---~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~~sG~~---- 176 (334)
||++-..|.+ ....|.|++|..+.. .+..+|....|..++.+++.+.+.+..+ .+.++++.++..
T Consensus 29 InL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (397)
T d3tata_ 29 VNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGAL 108 (397)
T ss_dssp EECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHH
T ss_pred EEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHH
Confidence 7887664433 223577888766542 3334455666664444444444433333 244555543333
Q ss_pred HHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCC-------CHHHHHHHHhcC
Q 019931 177 ANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHC-------DMSHLKTLLSCC 249 (334)
Q Consensus 177 An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-------D~~~Le~~l~~~ 249 (334)
+...++.++.. +||.|++..+.+......++.. |.+++.++.. |.+++.+.+...
T Consensus 109 ~l~~~~~~~~~--------------pgd~Vlv~~P~y~~y~~~~~~~----G~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 170 (397)
T d3tata_ 109 KVGADFLKRYF--------------PESGVWVSDPTWENHVAIFAGA----GFEVSTYPWYDEATNGVRFNDLLATLKTL 170 (397)
T ss_dssp HHHHHHHHHHC--------------SSCCCEECSSCCTTHHHHHHTT----TCCCEECCCCCTTTSSCCHHHHHHHHTTC
T ss_pred HHHHHHhhhcC--------------CCCcceecccCccccHHHHHHc----CCEEEEEecchhhccccchHHHHHHhhhc
Confidence 23333333444 3888999988888888887776 7888888742 566666666655
Q ss_pred CCCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCccc-ccccCCCCCccEEEecCccccc
Q 019931 250 TMRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGV-AEQFNCERDVDICVGTLSKAAG 325 (334)
Q Consensus 250 ~~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~-~~~~~~~~~~Div~~SlsKa~G 325 (334)
+++++++++.+++||+|.+.+ +++|+++|++|++++|.||+|...+++...... .....-....-|++.||||.++
T Consensus 171 ~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~ 250 (397)
T d3tata_ 171 PARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFS 250 (397)
T ss_dssp CSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHT
T ss_pred ccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCccccc
Confidence 557889999999999999877 678999999999999999999976664211111 1111111222488999999998
Q ss_pred CCc---cEEee
Q 019931 326 CQG---GFIAC 333 (334)
Q Consensus 326 ~~G---G~i~~ 333 (334)
+.| ||+++
T Consensus 251 ~~G~RiG~~~~ 261 (397)
T d3tata_ 251 LYGERVGGLSV 261 (397)
T ss_dssp BTTTCCBCCEE
T ss_pred ccCcccccccc
Confidence 876 77654
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.47 E-value=4.9e-13 Score=127.56 Aligned_cols=210 Identities=11% Similarity=0.053 Sum_probs=132.9
Q ss_pred EEeecCccCCC----CCCHHHHHHHHHh---cCCCCccccccCchHHHHHHHHHHHhHhC----CCc-E-EEeccHHHHH
Q 019931 112 LLFSGNDYLGL----SSHPTIAKAAARH---GMGPRGSALICGYTNYHRLLESCLADLKK----KED-C-LLCPTGFAAN 178 (334)
Q Consensus 112 l~f~sn~yLgl----~~~p~v~~a~~~~---g~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~-a-lv~~sG~~An 178 (334)
||++-.-|..= ...|.|++|.+.. .....+|....|..++.+++.+.+.+..+ .+. + +..++++.++
T Consensus 33 Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (412)
T d1ajsa_ 33 VNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGAL 112 (412)
T ss_dssp EECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred EEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHH
Confidence 78877655432 2346778765443 22234466677775554444444443322 233 2 3445666677
Q ss_pred HHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEE-eeC-------CCHHHHHHHHhcCC
Q 019931 179 MAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFV-YKH-------CDMSHLKTLLSCCT 250 (334)
Q Consensus 179 ~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~-~~~-------~D~~~Le~~l~~~~ 250 (334)
.++..++...- ....++||.|++..+.+......+... |++.+. ++. .|++.+++.+....
T Consensus 113 ~~~~~~l~~~~-------~~~~~pGd~Vlv~~P~y~~y~~~~~~~----G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~ 181 (412)
T d1ajsa_ 113 RIGAEFLARWY-------NGTNNKDTPVYVSSPTWENHNGVFTTA----GFKDIRSYRYWDTEKRGLDLQGFLSDLENAP 181 (412)
T ss_dssp HHHHHHHHHHS-------SSSSCCCSCEEEEESCCTHHHHHHHHT----TCSCEEEEECEETTTTEECHHHHHHHHHHSC
T ss_pred HHHHHHHHHHh-------hhcCCCCCEEEEeCCcchhhHHHHHHc----CCeEEEeecccccccccccHHHHHHHHHhcc
Confidence 66665553210 001135888888888888888787777 655433 222 26777777776655
Q ss_pred CCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCc-cc--ccccCCCCCccEEEecCcccc
Q 019931 251 MRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGG-GV--AEQFNCERDVDICVGTLSKAA 324 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~-g~--~~~~~~~~~~Div~~SlsKa~ 324 (334)
++++++++++++||+|.+.+ +++|+++|++||+++|.||+|...+++..-. .. ..... ..+..+++.|+||.+
T Consensus 182 ~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~s~sk~~ 260 (412)
T d1ajsa_ 182 EFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVS-EGFELFCAQSFSKNF 260 (412)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH-TTCCEEEEEECTTTS
T ss_pred CCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhh-hcccccccccccccc
Confidence 68899999999999999887 7889999999999999999999765542111 11 01111 123358889999999
Q ss_pred cCCc---cEEee
Q 019931 325 GCQG---GFIAC 333 (334)
Q Consensus 325 G~~G---G~i~~ 333 (334)
++.| |++++
T Consensus 261 ~~~G~R~G~~~~ 272 (412)
T d1ajsa_ 261 GLYNERVGNLTV 272 (412)
T ss_dssp CCGGGCEEEEEE
T ss_pred cCCCCCcccccc
Confidence 9876 66654
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.47 E-value=1.5e-12 Score=124.46 Aligned_cols=206 Identities=12% Similarity=0.069 Sum_probs=129.7
Q ss_pred EEEeecCccCC---C-CCCHHHHHHHHHhc---CCCCccccccCchHHHHHHHHHHHhHhC----CCcEEEe-c-cHHHH
Q 019931 111 LLLFSGNDYLG---L-SSHPTIAKAAARHG---MGPRGSALICGYTNYHRLLESCLADLKK----KEDCLLC-P-TGFAA 177 (334)
Q Consensus 111 ~l~f~sn~yLg---l-~~~p~v~~a~~~~g---~g~~~sr~~~G~~~~~~~LE~~La~~~g----~e~alv~-~-sG~~A 177 (334)
.||++-..|.. - ...|.|++|.+... .....|....|..++.+++.+.+.+..+ .+..+.. + +|..+
T Consensus 31 kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (412)
T d1yaaa_ 31 KVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGA 110 (412)
T ss_dssp CEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred cEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhH
Confidence 37887653332 2 23477887655432 2233456667775555555555544333 1233332 2 33333
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-------CCHHHHHHHHhcCC
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-------CDMSHLKTLLSCCT 250 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-------~D~~~Le~~l~~~~ 250 (334)
...++..+... ++||.|+...+.+......+... |++++.++. .|.+.++..+...+
T Consensus 111 ~~~~~~~~~~~------------~~gd~Vlip~P~~~~y~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (412)
T d1yaaa_ 111 LHISAKFFSKF------------FPDKLVYLSKPTWANHMAIFENQ----GLKTATYPYWANETKSLDLNGFLNAIQKAP 174 (412)
T ss_dssp HHHHHHHHHHH------------CTTCCEEEEESCCTTHHHHHHTT----TCCEEEEECEETTTTEECHHHHHHHHHHSC
T ss_pred HHHHHHHHhcc------------CCCCEEecccccCchhHHHHHHc----CCceecccccccccccccchhhhcccccCC
Confidence 32222222111 23788888888877777777666 777777764 26777888777655
Q ss_pred CCcEEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCc-cc-----ccccCCCCCccEEEecCc
Q 019931 251 MRKKVVVTDSLFSMDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGG-GV-----AEQFNCERDVDICVGTLS 321 (334)
Q Consensus 251 ~~~~lVv~e~v~n~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~-g~-----~~~~~~~~~~Div~~Sls 321 (334)
+++++|++.+++||+|.+.+ +++|.++|+++++++|.||+|...+++.... .. ...... .+..|++.|||
T Consensus 175 ~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~S 253 (412)
T d1yaaa_ 175 EGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST-VSPVFVCQSFA 253 (412)
T ss_dssp TTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTT-TCCEEEEEECT
T ss_pred CceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhcccc-CCCeEEEEecC
Confidence 57889999999999999887 7889999999999999999999755542111 00 011111 22248899999
Q ss_pred ccccCCc---cEEee
Q 019931 322 KAAGCQG---GFIAC 333 (334)
Q Consensus 322 Ka~G~~G---G~i~~ 333 (334)
|.|++.| ||+++
T Consensus 254 K~~~~~G~RiG~~~~ 268 (412)
T d1yaaa_ 254 KNAGMYGERVGCFHL 268 (412)
T ss_dssp TTSCCGGGCEEEEEE
T ss_pred CccccCcCceEEEEE
Confidence 9999888 88765
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=5.6e-13 Score=124.52 Aligned_cols=156 Identities=20% Similarity=0.078 Sum_probs=112.7
Q ss_pred HHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCe-EEEEcCCCchhhHHHHHHhhhcCCc
Q 019931 153 RLLESCLADLKKK--EDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKI-AIFSDALNHASIIDGIRIAERTKMV 229 (334)
Q Consensus 153 ~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd-~Vl~d~~~H~s~~~g~~ls~~~~g~ 229 (334)
.+|+++||+++|. +++++++++.+|+..++.+++.+ || +|++..+.+......++.. |.
T Consensus 59 ~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~p--------------gd~~Vl~~~P~y~~~~~~~~~~----g~ 120 (354)
T d1fg7a_ 59 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEP--------------GKDAILYCPPTYGMYSVSAETI----GV 120 (354)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCT--------------TTCEEEECSSSCTHHHHHHHHH----TC
T ss_pred HHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhcc--------------ccccccccccccccchhhhhcc----Cc
Confidence 5799999999995 57888899999999999998875 55 6888878888777777777 78
Q ss_pred EEEEeeCC-----CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHH--HHHcCCEEEEecCcccccccCCCcc
Q 019931 230 EVFVYKHC-----DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKL--RRKYGFLLVLDDAHGTFVCGKNGGG 302 (334)
Q Consensus 230 ~v~~~~~~-----D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~el--a~k~ga~LivDeAh~~Gv~G~~G~g 302 (334)
+++.++.. |+++++..+ .++++|++.+++||+|.+.+-+++..+ +.+++.++++||++........
T Consensus 121 ~v~~~~~~~~~~~d~~~l~~~~----~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~--- 193 (354)
T d1fg7a_ 121 ECRTVPTLDNWQLDLQGISDKL----DGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQAS--- 193 (354)
T ss_dssp EEEECCCCTTSCCCHHHHHTSC----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGC---
T ss_pred eeeccccccccccchhhhhhcc----cccceeeccCCCccceeEeeecccccccccccccccccccccchhhccccc---
Confidence 88777642 566665543 368999999999999999885443332 2346788899998875322211
Q ss_pred cccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 303 VAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 303 ~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
...... .....+++.||||+||..| ||++++
T Consensus 194 ~~~~~~-~~~~~iv~~S~SK~~~laGlRiGy~i~~ 227 (354)
T d1fg7a_ 194 LAGWLA-EYPHLAILRTLSKAFALAGLRCGFTLAN 227 (354)
T ss_dssp SGGGTT-TCTTEEEEEESSSTTCCGGGCCEEEEEC
T ss_pred cchhhc-ccccceEEeCCccccCCCcccccccccc
Confidence 111111 2223488899999999766 898874
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.6e-13 Score=127.65 Aligned_cols=174 Identities=15% Similarity=0.054 Sum_probs=121.5
Q ss_pred CCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCC
Q 019931 124 SHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFK 200 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~ 200 (334)
-+|+|++|+.....+ +|.- -...+.+++++.|++++|.+ ++++| .||+.|+.+++..++.+
T Consensus 30 ~~~~Vl~am~~~~i~---HRs~-~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~~------------ 93 (388)
T d1h0ca_ 30 LPPRIMAAGGLQMIG---SMSK-DMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEP------------ 93 (388)
T ss_dssp CCHHHHHHHTCCCCC---TTSH-HHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCS------------
T ss_pred CCHHHHHHhCcCCCC---CCCH-HHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhcc------------
Confidence 378888887543332 2211 12467799999999999975 24555 68899999999988764
Q ss_pred CCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHH
Q 019931 201 DEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELV 275 (334)
Q Consensus 201 ~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ 275 (334)
++.++.....|.+.......... +..+..+.. .|.+.+++.+.. +++++|++.++.|.+|.+.|+++|.
T Consensus 94 --~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~n~tG~i~pi~~i~ 167 (388)
T d1h0ca_ 94 --GDSFLVGANGIWGQRAVDIGERI--GARVHPMTKDPGGHYTLQEVEEGLAQ--HKPVLLFLTHGESSTGVLQPLDGFG 167 (388)
T ss_dssp --SCCEEECBSSHHHHHHHHHHHHH--C--CBCCBCCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECCCTTHH
T ss_pred --CCceeeecccceeeeeccccccc--cccccccccCCccccchHHHHHHhcc--CCcceEEEeeeeeccccccCHHHHH
Confidence 55566655666654322222111 333333332 267777666654 3678999999999999999999999
Q ss_pred HHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccccCCc
Q 019931 276 KLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 276 ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~G~~G 328 (334)
++|++||+++++|.+|+.|.+- ..+ ..++|+++.|..|.+++.+
T Consensus 168 ~~~~~~g~~~~vD~~qs~g~~~---------~d~~~~~~D~~~~s~~K~~~gp~ 212 (388)
T d1h0ca_ 168 ELCHRYKCLLLVDSVASLGGTP---------LYMDRQGIDILYSGSQKALNAPP 212 (388)
T ss_dssp HHHHTTTCEEEEECTTTTTTSC---------CCTTTTTCSEEEEESSSTTCCCT
T ss_pred HHhhcccccceecccccccccc---------ccccccccceecccccccccCCC
Confidence 9999999999999999987431 122 2467999999999997644
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.41 E-value=1.7e-12 Score=120.41 Aligned_cols=190 Identities=9% Similarity=-0.027 Sum_probs=123.0
Q ss_pred ceeEEEeecC-ccCCCCCCHHHHHHHHH-hcCCCCccccccCchHHHHHHHHHHHhHhCC-----CcEEEeccHHHHHHH
Q 019931 108 FKRLLLFSGN-DYLGLSSHPTIAKAAAR-HGMGPRGSALICGYTNYHRLLESCLADLKKK-----EDCLLCPTGFAANMA 180 (334)
Q Consensus 108 g~~~l~f~sn-~yLgl~~~p~v~~a~~~-~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~-----e~alv~~sG~~An~~ 180 (334)
+++.+.++.| +-+ ..++.+++++.+ ...+...+....|. .+|++++|++++. +.+++++++.+++..
T Consensus 18 ~~d~~~l~~~enp~--~~p~~i~~~~~~~~~~~~~~~yp~~g~----~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~ 91 (334)
T d2f8ja1 18 KRDKTYLALNENPF--PFPEDLVDEVFRRLNSDALRIYYDSPD----EELIEKILSYLDTDFLSKNNVSVGNGADEIIYV 91 (334)
T ss_dssp CCCSEECSSCCCSS--CCCHHHHHHHHHHCCTTGGGSCCCSSC----HHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHH
T ss_pred CCCceEEECCCCCC--CCCHHHHHHHHHHhhcchhcCCCCCCc----HHHHHHHHHHhcccCCCcceEEecCcchhHHHH
Confidence 4778888766 333 447888887654 44433222222343 5688888888763 345666655666554
Q ss_pred HHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcC
Q 019931 181 VIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDS 260 (334)
Q Consensus 181 ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~ 260 (334)
++ .+ +|.|++..+.+..+...++.. |++++.++.++-.... .....+++++++.+
T Consensus 92 l~----~~--------------~d~v~i~~P~y~~~~~~~~~~----g~~~v~v~~~~~~~~~---~~~~~~~~~l~l~n 146 (334)
T d2f8ja1 92 MM----LM--------------FDRSVFFPPTYSCYRIFAKAV----GAKFLEVPLTKDLRIP---EVNVGEGDVVFIPN 146 (334)
T ss_dssp HH----HH--------------SSEEEECSSCCHHHHHHHHHH----TCCEEECCCCTTSCCC---CCCCCTTEEEEEES
T ss_pred Hh----hh--------------ccccccccccccccccchhcc----CCcccccccccccccc---ccccccceEEEecc
Confidence 43 33 466777777888888887777 8899988754211111 11124788999999
Q ss_pred CCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc---cEEeeC
Q 019931 261 LFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG---GFIACR 334 (334)
Q Consensus 261 v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G---G~i~~~ 334 (334)
++||+|.+.+.++|.+++ ++++++|+||++...... . ...... ..+..|++.||||+++..| ||++++
T Consensus 147 P~NPtG~~~s~~~l~~~~-~~~~~ii~Dd~~~~~~~~--~--~~~~~~-~~~~~i~~~S~SK~~~~~G~R~G~~~~~ 217 (334)
T d2f8ja1 147 PNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGE--S--YVDFLK-KYENLAVIRTFSKAFSLAAQRVGYVVAS 217 (334)
T ss_dssp SCTTTCCCCCHHHHHHHH-TTTCEEEEECTTGGGTCC--C--CGGGGG-TCSSEEEEEESTTTSSCTTTCEEEEEEC
T ss_pred cccccceeecHHHhhccc-cceeEEeecccchhhccc--c--cccccc-cCceEEEEecCccccchhhhhhhhcccc
Confidence 999999999988887764 689999999998643221 1 111111 2233589999999998766 888764
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.39 E-value=2.2e-12 Score=121.65 Aligned_cols=157 Identities=16% Similarity=0.093 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHhHhCC--CcEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcC
Q 019931 150 NYHRLLESCLADLKKK--EDCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTK 227 (334)
Q Consensus 150 ~~~~~LE~~La~~~g~--e~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~ 227 (334)
...+++++++++++|+ +..++++++++++..++........... ....+|+++..++.+.....+......
T Consensus 70 ~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~-------~~~~vi~~~~~~~~~~~~~~~~~~~~~ 142 (404)
T d1qz9a_ 70 DLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRS-------PERRVIVTETSNFPTDLYIAEGLADML 142 (404)
T ss_dssp GHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHS-------TTCCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhhhhcccC-------CCcEEEEeccccchHHHHHHhhhheee
Confidence 5668999999999996 4688889999988877654332100000 123455566555554433333221111
Q ss_pred CcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCccccccc
Q 019931 228 MVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQF 307 (334)
Q Consensus 228 g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~ 307 (334)
...+..-...+++.+++++.+ +|++|++.+++|.+|.+.|+++|.++|+++|+++++|.+|+.|.+. .
T Consensus 143 ~~~~~~~~~~~~~~~~~~i~~---~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~---------~ 210 (404)
T d1qz9a_ 143 QQGYTLRLVDSPEELPQAIDQ---DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVP---------V 210 (404)
T ss_dssp CSSCEEEEESSGGGHHHHCST---TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC---------C
T ss_pred eeceeccccccchhHHHhcCC---CceEEEEecccccccceecHHHHhccccccccceeEEeeccccccc---------c
Confidence 222222233577888888864 8999999999999999999999999999999999999999987532 1
Q ss_pred CC-CCCccEEEecCccccc
Q 019931 308 NC-ERDVDICVGTLSKAAG 325 (334)
Q Consensus 308 ~~-~~~~Div~~SlsKa~G 325 (334)
.+ ..++|+++.|.+|.+.
T Consensus 211 ~~~~~~~d~~~~s~~K~~~ 229 (404)
T d1qz9a_ 211 DLHQAGADYAIGCTYKYLN 229 (404)
T ss_dssp CHHHHTCSEEEECSSSTTC
T ss_pred ccccccceEEEEechhhcc
Confidence 11 1356899999999873
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.37 E-value=7.6e-12 Score=111.26 Aligned_cols=194 Identities=19% Similarity=0.130 Sum_probs=116.2
Q ss_pred EeecCccCCCCCCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEeccHHHHHHHHHHHHhhhhh
Q 019931 113 LFSGNDYLGLSSHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLCPTGFAANMAVIVAVGNIAS 190 (334)
Q Consensus 113 ~f~sn~yLgl~~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~~sG~~An~~ai~al~~~~~ 190 (334)
+| .|||.. ..||+|++|+.+...+.. ..+|..+..+++++++++++|++ .++++++|++||..++.++..+
T Consensus 3 ~f-~nd~~~-g~~P~v~eAl~~~~~~~~---~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~~-- 75 (340)
T d1svva_ 3 SF-VNDYSV-GMHPKILDLMARDNMTQH---AGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRP-- 75 (340)
T ss_dssp EC-SCSCSS-CCCHHHHHHHHHHTTCCC---CSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCT--
T ss_pred Cc-ccCCCC-CCCHHHHHHHHHHhhcCC---CCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhhh--
Confidence 67 567766 469999999987654432 12456788899999999999976 4677799999999999987764
Q ss_pred hccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC---CCHHHHHHHHhcC----CCCcEEEEEcCCCC
Q 019931 191 LLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH---CDMSHLKTLLSCC----TMRKKVVVTDSLFS 263 (334)
Q Consensus 191 ~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~---~D~~~Le~~l~~~----~~~~~lVv~e~v~n 263 (334)
++.++.+...|.+........... ......... .+.+....+.... ..++.++++... +
T Consensus 76 ------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 141 (340)
T d1svva_ 76 ------------WEAVIATQLGHISTHETGAIEATG-HKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNT-T 141 (340)
T ss_dssp ------------TEEEEEETTSHHHHSSTTHHHHTT-CCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-C
T ss_pred ------------ccccccccccceeeeecccccccc-eeeeecccccccccchhHHHHhhhhhcccCCcceeeeeccc-c
Confidence 677777777777654333322111 222222222 1333333333221 112334444444 4
Q ss_pred CCCCccC---HHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc
Q 019931 264 MDGDFAP---MVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 264 ~~G~~~p---L~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G 328 (334)
..|.+.+ +..+.+.|+++|+++++|+++..+.+...+........ ....++...+..|..+..+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 208 (340)
T d1svva_ 142 EVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADI-ARLTDMFYIGATKAGGMFG 208 (340)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHH-HHHCSEEEEECTTTTCSSC
T ss_pred cccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccc-cccceeeecCCcccccccc
Confidence 4454544 66678999999999999999987655433222211111 1112355555566554433
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.36 E-value=3.3e-12 Score=118.52 Aligned_cols=179 Identities=12% Similarity=0.051 Sum_probs=114.6
Q ss_pred CHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCc---EEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCC
Q 019931 125 HPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKED---CLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFK 200 (334)
Q Consensus 125 ~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~---alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~ 200 (334)
+++|++|+.+...+ .|--. .....+++++.|++++|.+. ++++ +||+.++..++..+..+
T Consensus 12 ~~~V~~A~~~~~~~---~~~~~-~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~------------ 75 (361)
T d1m32a_ 12 SRTVKEAMLFDSCT---WDDDY-NIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGP------------ 75 (361)
T ss_dssp CHHHHHTTCCCCCT---TSHHH-HTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCT------------
T ss_pred CHHHHHHhhhhccC---CCcHH-HHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhh------------
Confidence 57777765433221 11111 12456889999999999742 3444 68899999999887654
Q ss_pred CCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEee--C--CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHH
Q 019931 201 DEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYK--H--CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVK 276 (334)
Q Consensus 201 ~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~--~--~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~e 276 (334)
++++++.....+........... +....... . ......+........++++|.+..+.+.+|.+.|+++|.+
T Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~ 151 (361)
T d1m32a_ 76 -QDKVLIVSNGAYGARMVEMAGLM---GIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGA 151 (361)
T ss_dssp -TCCEEEEESSHHHHHHHHHHHHH---TCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHH
T ss_pred -ccccceeeehhhhhhHHHHhhhh---hcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccchhhhhhhh
Confidence 24555555554444332222221 22222222 1 1222223323222347899999999999999999999999
Q ss_pred HHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCccccc-CCc-cEEe
Q 019931 277 LRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAG-CQG-GFIA 332 (334)
Q Consensus 277 la~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G-~~G-G~i~ 332 (334)
+|+++|+++++|.+|+.|... +.+. .++|++++|..|.++ ..| |++.
T Consensus 152 ~~~~~g~~~~vDa~qs~G~~~---------~d~~~~~~D~~~~s~~K~l~gp~G~g~l~ 201 (361)
T d1m32a_ 152 LAHRYGKTYIVDAMSSFGGIP---------MDIAALHIDYLISSANKCIQGVPGFAFVI 201 (361)
T ss_dssp HHHHHTCEEEEECTTTTTTSC---------CCTTTTTCSEEEEESSSTTCCCSSEEEEE
T ss_pred hhcccceeeEeecccccCccc---------ccccccccceEEeeecccccCCCCceEEE
Confidence 999999999999999987531 2222 467999999999995 455 5543
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.30 E-value=1.3e-11 Score=114.93 Aligned_cols=172 Identities=18% Similarity=0.149 Sum_probs=118.1
Q ss_pred CCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCC
Q 019931 124 SHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFK 200 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~ 200 (334)
-+|+|++|+..+..+..+. -.....+++++.|++++|.+ ..++| .||+.++.+++..+..+
T Consensus 29 v~~~Vl~am~~~~~~hr~~----ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~~------------ 92 (377)
T d1vjoa_ 29 AHPSVLQAMNVSPVGHLDP----AFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEP------------ 92 (377)
T ss_dssp CCHHHHHHHSSCCCCTTSH----HHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCT------------
T ss_pred CCHHHHHHhCcCCCCCCCH----HHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhcccc------------
Confidence 4789998886655443221 12467899999999999964 46666 67899999999887764
Q ss_pred CCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEee--CC---CHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHH
Q 019931 201 DEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYK--HC---DMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELV 275 (334)
Q Consensus 201 ~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~--~~---D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ 275 (334)
++.++.....|.+.......... +.....+. .. +.+..+..... .++++|++..+.+.+|.+.|+++|.
T Consensus 93 --~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~tg~~~~i~~i~ 166 (377)
T d1vjoa_ 93 --GDVVLIGVAGYFGNRLVDMAGRY--GADVRTISKPWGEVFSLEELRTALET--HRPAILALVHAETSTGARQPLEGVG 166 (377)
T ss_dssp --TCEEEEEESSHHHHHHHHHHHHT--TCEEEEEECCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECCCTTHH
T ss_pred --ccccceeeechhhhhhhhhhhhh--cccccccccCCCCcccchhhhhhhhc--Ccceeeeeeeeeccceeeechhhhh
Confidence 55556555566553322222211 33333332 22 34444444333 2678888888999999999999999
Q ss_pred HHHHHcCCEEEEecCcccccccCCCcccccccCC-CCCccEEEecCcccccC
Q 019931 276 KLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNC-ERDVDICVGTLSKAAGC 326 (334)
Q Consensus 276 ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~-~~~~Div~~SlsKa~G~ 326 (334)
++|+++|+++++|.+|++|.+. ..+ ..++|+++.|..|.+++
T Consensus 167 ~~~~~~g~~~~vDa~~~~g~~~---------~~~~~~~~d~~~~s~~K~~~g 209 (377)
T d1vjoa_ 167 ELCREFGTLLLVDTVTSLGGVP---------IFLDAWGVDLAYSCSQKGLGC 209 (377)
T ss_dssp HHHHHHTCEEEEECTTTTTTSC---------CCTTTTTCSEEECCSSSTTCS
T ss_pred hhhhhccceEEEecchhhhhhh---------hcccccccceeeecccccccC
Confidence 9999999999999999987431 222 24678999999998855
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.29 E-value=1e-11 Score=116.42 Aligned_cols=181 Identities=12% Similarity=0.060 Sum_probs=120.0
Q ss_pred CHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCC----C-c-EEEeccHHHHHHHHHHHHhhhhhhccCCCcc
Q 019931 125 HPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKK----E-D-CLLCPTGFAANMAVIVAVGNIASLLAGDEKS 198 (334)
Q Consensus 125 ~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~----e-~-alv~~sG~~An~~ai~al~~~~~~~~~~~~~ 198 (334)
+|+|++|+..+..+..+. -......++.+.+.++++. + + .++++||++++.+++..+..+.
T Consensus 15 ~~~V~~Am~~~~~~hr~~----~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~--------- 81 (382)
T d2bkwa1 15 SGAVQKALDVPSLGHTSP----EFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSK--------- 81 (382)
T ss_dssp CHHHHHTTSCCCCCTTSH----HHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTT---------
T ss_pred CHHHHHHhCcccCCCCcH----HHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhc---------
Confidence 577777765443322111 1134556677777777653 2 3 4555899999999999886431
Q ss_pred CCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC------CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHH
Q 019931 199 FKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH------CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMV 272 (334)
Q Consensus 199 ~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~------~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~ 272 (334)
.+||.|++....|.+-........ .+..+..+.. .+.+.+++++.. .+++++++..+.+.+|...|++
T Consensus 82 --~~gd~vlv~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~tg~~~~~~ 155 (382)
T d2bkwa1 82 --APNKNVLVVSTGTFSDRFADCLRS--YGAQVDVVRPLKIGESVPLELITEKLSQ--NSYGAVTVTHVDTSTAVLSDLK 155 (382)
T ss_dssp --CSCCEEEEECSSHHHHHHHHHHHH--TTCEEEEECCSSTTSCCCHHHHHHHHHH--SCCSEEEEESEETTTTEECCHH
T ss_pred --CCCCceEEEEechhhhhhhhhccc--cccccccccccCCCCccchhHHHHHhhh--ccchheeeeeccccccccccch
Confidence 246777766665555332222221 1444444432 267778877765 3678888889999999999999
Q ss_pred HHHHHHHHcC--CEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccc-cCCc-cEEee
Q 019931 273 ELVKLRRKYG--FLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAA-GCQG-GFIAC 333 (334)
Q Consensus 273 ~L~ela~k~g--a~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~-G~~G-G~i~~ 333 (334)
++.++|++++ +++++|.+|++|.+ ...+. .++|+++.|-+|.+ |+.| |++..
T Consensus 156 ~~~~~~~~~~~~~~~~vDa~qs~g~~---------pid~~~~giD~~~~s~~K~l~gP~G~g~l~v 212 (382)
T d2bkwa1 156 AISQAIKQTSPETFFVVDAVCSIGCE---------EFEFDEWGVDFALTASQKAIGAPAGLSISLC 212 (382)
T ss_dssp HHHHHHHHHCTTSEEEEECTTTTTTS---------CCCTTTTTCSEEEEESSSTTCCCSCEEEEEE
T ss_pred hhhhhccccccceeeeeecccccccc---------cccccccCeeEEeecccccCcCCCchhhhhc
Confidence 9999988775 99999999998743 12332 46899999999999 5566 56543
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=2.4e-11 Score=117.70 Aligned_cols=210 Identities=12% Similarity=-0.093 Sum_probs=133.8
Q ss_pred ceeEEEeecCccCCCCCCHHHHHHHHHhc-CCCCccccccCchHHHHHHHHHHHhHhCCCc-------EEEeccHHHHHH
Q 019931 108 FKRLLLFSGNDYLGLSSHPTIAKAAARHG-MGPRGSALICGYTNYHRLLESCLADLKKKED-------CLLCPTGFAANM 179 (334)
Q Consensus 108 g~~~l~f~sn~yLgl~~~p~v~~a~~~~g-~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~-------alv~~sG~~An~ 179 (334)
|+.-+|++|. ..-..+|.+.+.+.++- ......-.+...+.+..++-+.|++++|.+. ..++++|++||+
T Consensus 52 g~~~~n~asf--~~t~~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~ 129 (450)
T d1pmma_ 52 GNARQNLATF--CQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACM 129 (450)
T ss_dssp CCGGGBCSCC--SCCCCCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHH
T ss_pred CCcccccccc--ccCCCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHH
Confidence 3434466663 22234788888776542 2211111111123444455557777888532 578899999999
Q ss_pred HHHHHHhhhhh--hccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC------CCHHHHHHHHhcCCC
Q 019931 180 AVIVAVGNIAS--LLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH------CDMSHLKTLLSCCTM 251 (334)
Q Consensus 180 ~ai~al~~~~~--~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~------~D~~~Le~~l~~~~~ 251 (334)
.++.+...... ....+ . .....+++....|.|+...+++. |.+++.++. .|+++|++++.+
T Consensus 130 ~a~~aar~~~~~~~~~~g-~---~~~~~~~~~~~~H~s~~Kaa~~~----gi~~~~v~~~~~~~~~d~~~L~~~i~~--- 198 (450)
T d1pmma_ 130 LGGMAMKWRWRKRMEAAG-K---PTDKPNLVCGPVQICWHKFARYW----DVELREIPMRPGQLFMDPKRMIEACDE--- 198 (450)
T ss_dssp HHHHHHHHHHHHHHHHHT-C---CCSCCEEEESSCCHHHHHHHHHT----TCEEEECCCBTTBCSCCHHHHHHHCCT---
T ss_pred HHHHHHHHHHHHHhhhcC-C---CCCCceEEecccHHHHHHHHHHc----CCCceEeeecCCCCcCcHHHHHHHhhh---
Confidence 99977543210 00000 0 01223444556899999999888 787777653 389999998875
Q ss_pred CcEEEEEcCCCCCCCCccCHHHHHHHH------HHcCCEEEEecCcccccc--cCCCcccccccCCCCCccEEEecCccc
Q 019931 252 RKKVVVTDSLFSMDGDFAPMVELVKLR------RKYGFLLVLDDAHGTFVC--GKNGGGVAEQFNCERDVDICVGTLSKA 323 (334)
Q Consensus 252 ~~~lVv~e~v~n~~G~~~pL~~L~ela------~k~ga~LivDeAh~~Gv~--G~~G~g~~~~~~~~~~~Div~~SlsKa 323 (334)
+|++|+.....+.+|.+.|+++|.++| +++|+|++||.|++.++. -.....+ .+++ +++|.+..+.+|.
T Consensus 199 ~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~--~~~~-~~aDSi~~s~HK~ 275 (450)
T d1pmma_ 199 NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVW--DFRL-PRVKSISASGHKF 275 (450)
T ss_dssp TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC--STTS-TTEEEEEEETTTT
T ss_pred CceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhh--hhcc-cceeEeecChhhc
Confidence 788999888999999999998877775 568999999999986543 1111111 1232 5689999999998
Q ss_pred cc-CCc-cEEee
Q 019931 324 AG-CQG-GFIAC 333 (334)
Q Consensus 324 ~G-~~G-G~i~~ 333 (334)
++ ..| |++..
T Consensus 276 ~~~p~g~g~l~~ 287 (450)
T d1pmma_ 276 GLAPLGCGWVIW 287 (450)
T ss_dssp TCCCSSCEEEEE
T ss_pred cCCCCCeeEEEe
Confidence 75 455 66543
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.28 E-value=1.4e-10 Score=112.96 Aligned_cols=171 Identities=13% Similarity=0.005 Sum_probs=116.0
Q ss_pred hHHHHHHHHHH----HhHhCCC-----------cEEEeccHHHHHHHHHHHHhhhhh-hc---cCCCc-cCCCCCeEEEE
Q 019931 149 TNYHRLLESCL----ADLKKKE-----------DCLLCPTGFAANMAVIVAVGNIAS-LL---AGDEK-SFKDEKIAIFS 208 (334)
Q Consensus 149 ~~~~~~LE~~L----a~~~g~e-----------~alv~~sG~~An~~ai~al~~~~~-~~---~~~~~-~~~~~gd~Vl~ 208 (334)
++...++|+.+ ++++|.+ ..+++++|++||+.++.+...... -+ ..+-. ....+.-+|++
T Consensus 108 sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~ 187 (476)
T d1js3a_ 108 SPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYA 187 (476)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEE
T ss_pred hhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEe
Confidence 45556666655 5556653 247889999999999976543210 00 00000 00001246888
Q ss_pred cCCCchhhHHHHHHhhhcCCcEEEEeeCC-----CHHHHHHHHhcCC---CCcEEEEEcCCCCCCCCccCHHHHHHHHHH
Q 019931 209 DALNHASIIDGIRIAERTKMVEVFVYKHC-----DMSHLKTLLSCCT---MRKKVVVTDSLFSMDGDFAPMVELVKLRRK 280 (334)
Q Consensus 209 d~~~H~s~~~g~~ls~~~~g~~v~~~~~~-----D~~~Le~~l~~~~---~~~~lVv~e~v~n~~G~~~pL~~L~ela~k 280 (334)
....|.|+..++.+. |..++.++.+ |+++|++.|++.. ..+.+|+...-...+|.+.|+++|.++|++
T Consensus 188 s~~~H~Si~ka~~~l----Gl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~ 263 (476)
T d1js3a_ 188 SDQAHSSVERAGLIG----GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHE 263 (476)
T ss_dssp ETTCCHHHHHHHHHH----TCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhc----CceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHh
Confidence 889999999999888 6777766643 8999999997642 234566766667789999999999999999
Q ss_pred cCCEEEEecCcccccc-cCCCcccccccCCCCCccEEEecCcccccC
Q 019931 281 YGFLLVLDDAHGTFVC-GKNGGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 281 ~ga~LivDeAh~~Gv~-G~~G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
||+||+||.|++..+. ....+... .+ .+.+|.++.+++|.++.
T Consensus 264 ~~~wlHVDAA~Gg~~~~~~~~~~~~--~g-i~~aDSit~d~HK~l~~ 307 (476)
T d1js3a_ 264 EDIWLHVDAAYAGSAFICPEFRHLL--NG-VEFADSFNFNPHKWLLV 307 (476)
T ss_dssp TTCEEEEECTTGGGGGGSTTTGGGG--TT-GGGCSEEEECHHHHSSC
T ss_pred cCcEEEEecccchhhhhhcchhhhh--cC-CcccceeeecCcccccc
Confidence 9999999999985433 11111111 12 24679999999999976
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.26 E-value=3.1e-11 Score=113.02 Aligned_cols=174 Identities=10% Similarity=0.027 Sum_probs=119.6
Q ss_pred CCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCC--cEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCC
Q 019931 124 SHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKE--DCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFK 200 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e--~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~ 200 (334)
-+|+|++|+.++..+. |- .-..++.+++++.|+++++.+ .+++| .||+.|+.+++..+..+
T Consensus 28 ~~~~V~~Am~~~~~~h---r~-~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~~------------ 91 (388)
T d2ch1a1 28 CSKRVLTAMTNTVLSN---FH-AELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEE------------ 91 (388)
T ss_dssp CCHHHHHHTTSCCCCT---TC-HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCT------------
T ss_pred CCHHHHHHhCcCCCCC---CC-HHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhccc------------
Confidence 3799988875543322 21 112467789999999999975 46666 57899999999988764
Q ss_pred CCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHH
Q 019931 201 DEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELV 275 (334)
Q Consensus 201 ~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ 275 (334)
++.|+.-...|.+......... .+.....+.. .+.+.++..+.. .+++++++.++.+.+|...|+++|.
T Consensus 92 --~~~vl~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~t~tG~~~~~~~i~ 165 (388)
T d2ch1a1 92 --GDRVLIAVNGIWAERAVEMSER--YGADVRTIEGPPDRPFSLETLARAIEL--HQPKCLFLTHGDSSSGLLQPLEGVG 165 (388)
T ss_dssp --TCEEEEEESSHHHHHHHHHHHH--TTCEEEEEECCTTSCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECCCTTHH
T ss_pred --cccccccccccccccchhhhhh--hcccccccccccccccchhhhhhhhcc--CCcceeeeeecccccccccchhhhc
Confidence 5555555455555332222221 1344444432 255666665544 2678888889999999999999999
Q ss_pred HHHHHcCCEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccccCCc
Q 019931 276 KLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 276 ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~G~~G 328 (334)
++|+++|+++++|.++++|.. ...+. .++|+++.|-.|.+++.+
T Consensus 166 ~~~~~~~~~~~vD~~ss~g~~---------pid~~~~~~d~~~~s~~K~~~gp~ 210 (388)
T d2ch1a1 166 QICHQHDCLLIVDAVASLCGV---------PFYMDKWEIDAVYTGAQKVLGAPP 210 (388)
T ss_dssp HHHHHTTCEEEEECTTTBTTB---------CCCTTTTTCCEEECCCC-CCCCCS
T ss_pred chhccccceeeeeeeeccccc---------ccchhccCceEEEEccccccCCCC
Confidence 999999999999999998632 12222 467999999999997644
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.10 E-value=8.6e-11 Score=112.94 Aligned_cols=152 Identities=12% Similarity=0.034 Sum_probs=102.4
Q ss_pred HHHHHHHHhHh---C---CC--cEEEeccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhh
Q 019931 153 RLLESCLADLK---K---KE--DCLLCPTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAE 224 (334)
Q Consensus 153 ~~LE~~La~~~---g---~e--~alv~~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~ 224 (334)
.+|++.|+++. | .+ ++++.++.++++.+++.+|..++ .....+++|.|++..+++..+...+++.
T Consensus 103 ~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~------~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~- 175 (425)
T d2hoxa1 103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNM------TATPDAPESKVVAHAPFYPVFREQTKYF- 175 (425)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCT------TTCTTSCCEEEEECSSCCHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhcccc------ccccCCCCCEEEEecCccccHHHHHHHc-
Confidence 57888888865 3 22 35555666889999999886431 1111235888999999988887777666
Q ss_pred hcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccc
Q 019931 225 RTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVA 304 (334)
Q Consensus 225 ~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~ 304 (334)
+.+.+.+. .|.+.+++.++ ++++++++++|+||+|.+.. +-.+++.+|.||+|....+ ..+
T Consensus 176 ---~~~~~~~~-~D~~~~~~~~~---~~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f----~~~- 236 (425)
T d2hoxa1 176 ---DKKGYVWA-GNAANYVNVSN---PEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHY----TPI- 236 (425)
T ss_dssp ---CBTTEEEE-EEGGGGTTCSC---GGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTT----SCC-
T ss_pred ---CCCCCccC-CCHHHHHhhCC---CCceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccc----cch-
Confidence 44444444 36666655544 37899999999999998632 2236899999999953222 111
Q ss_pred cccCCCCCccEEEecCcccccCCc---cEEee
Q 019931 305 EQFNCERDVDICVGTLSKAAGCQG---GFIAC 333 (334)
Q Consensus 305 ~~~~~~~~~Div~~SlsKa~G~~G---G~i~~ 333 (334)
... .+-+|++.||||+||..| ||+++
T Consensus 237 --~~~-~~~~Ivl~S~SK~fglaGlRiGw~i~ 265 (425)
T d2hoxa1 237 --KYK-ADEDILLFTMSKFTGHSGSRFGWALI 265 (425)
T ss_dssp --CSC-BCCSEEEEEHHHHTSCGGGCCEEEEE
T ss_pred --hhh-cCCeEEEEeCHHhccCcchheeeEEe
Confidence 111 233799999999999887 88654
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.06 E-value=6.7e-10 Score=103.71 Aligned_cols=178 Identities=18% Similarity=0.079 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHhHhCCCc-EE-EeccHHHHHHHHHHHHhhhhhhccCCCccCCC
Q 019931 124 SHPTIAKAAARHGMGPRGSALICGYTNYHRLLESCLADLKKKED-CL-LCPTGFAANMAVIVAVGNIASLLAGDEKSFKD 201 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr~~~G~~~~~~~LE~~La~~~g~e~-al-v~~sG~~An~~ai~al~~~~~~~~~~~~~~~~ 201 (334)
-+|+|++|+.+...+..+. - ...+.++.++.|+++++.+. ++ +..||+.|+.+++..+..+
T Consensus 11 v~~~V~~am~~~~~~hr~~-~---f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~~------------- 73 (348)
T d1iuga_ 11 LHPKALEALARPQLHHRTE-A---AREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAP------------- 73 (348)
T ss_dssp CCHHHHHHHHSCCCCTTSH-H---HHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCT-------------
T ss_pred CCHHHHHHhcCCCCCCCCH-H---HHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcccc-------------
Confidence 3788999887644332211 1 13567889999999999764 44 4489999999999888765
Q ss_pred CCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEee--CCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHH
Q 019931 202 EKIAIFSDALNHASIIDGIRIAERTKMVEVFVYK--HCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRR 279 (334)
Q Consensus 202 ~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~--~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~ 279 (334)
++.|++-...+.+-. .....++ .+.++..+. ..+...++... .+++++|+..+..+.+|.+.|+++|.++|+
T Consensus 74 -g~~vlv~~~G~f~~~-~~~~a~~-~~~~~~~~~~~~g~~~~~~~~~---~~~~~~v~~~h~eTstG~~~~i~~i~~~~~ 147 (348)
T d1iuga_ 74 -GERVLVPVYGKFSER-FYEIALE-AGLVVERLDYPYGDTPRPEDVA---KEGYAGLLLVHSETSTGALADLPALARAFK 147 (348)
T ss_dssp -TCEEEEEECSHHHHH-HHHHHHH-TTCEEEEEECCTTCCCCTTTSC---CSSCSEEEEESEETTTTEECCHHHHHHHHH
T ss_pred -cccceeecchHHHHH-HHHHHHh-cCcccccccccCCCcccccccc---ccCCCeeEEEecchhhhhhccHHHHHHHHH
Confidence 444443333333321 1112211 144444443 33222222221 136677777777777899999999999999
Q ss_pred HcC--CEEEEecCcccccccCCCcccccccCCC-CCccEEEecCcccc-cCCc-cEEee
Q 019931 280 KYG--FLLVLDDAHGTFVCGKNGGGVAEQFNCE-RDVDICVGTLSKAA-GCQG-GFIAC 333 (334)
Q Consensus 280 k~g--a~LivDeAh~~Gv~G~~G~g~~~~~~~~-~~~Div~~SlsKa~-G~~G-G~i~~ 333 (334)
+++ +++++|.++++|... ..+. .++|++++|-.|++ |..| |+++.
T Consensus 148 ~~~~~~l~~vDavss~g~~~---------i~~d~~~iD~~~~~sqK~l~gppG~~~v~~ 197 (348)
T d1iuga_ 148 EKNPEGLVGADMVTSLLVGE---------VALEAMGVDAAASGSQKGLMCPPGLGFVAL 197 (348)
T ss_dssp HHCTTCEEEEECTTTBTTBC---------CCSGGGTCSEEEEESSSTTCCCSCEEEEEE
T ss_pred hhhccceeechhhhcccccc---------cccccccCCEEEeccccceecCCceeeeee
Confidence 985 899999999986431 2222 35899999999999 6666 56554
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=98.67 E-value=3.3e-09 Score=97.74 Aligned_cols=185 Identities=9% Similarity=-0.013 Sum_probs=99.2
Q ss_pred eeEEEeecCccCCCCCCHHHHHHHHHhcCCC---CccccccC-----chHHHHHHHHHHHhHhCCCc--EEEe-ccHHHH
Q 019931 109 KRLLLFSGNDYLGLSSHPTIAKAAARHGMGP---RGSALICG-----YTNYHRLLESCLADLKKKED--CLLC-PTGFAA 177 (334)
Q Consensus 109 ~~~l~f~sn~yLgl~~~p~v~~a~~~~g~g~---~~sr~~~G-----~~~~~~~LE~~La~~~g~e~--alv~-~sG~~A 177 (334)
|++.||+..- -.-+++|++++.+..... +.+..-.+ ...+.++.++.|+++++.+. .++| ++++++
T Consensus 2 ~~~~nF~pGP---~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~ 78 (360)
T d1w23a_ 2 KQVFNFNAGP---SALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASL 78 (360)
T ss_dssp CCCEECCSSS---CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH
T ss_pred CceeEeCCCC---cCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHH
Confidence 4555776542 124799999987643211 11111111 14577899999999999743 5555 444445
Q ss_pred HHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC--C---CHHHHHHHHhcCCCC
Q 019931 178 NMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH--C---DMSHLKTLLSCCTMR 252 (334)
Q Consensus 178 n~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~--~---D~~~Le~~l~~~~~~ 252 (334)
++.+....... +++.++.-...|.+......... .+........ . +.+.++..++ .
T Consensus 79 ~~~~~~~~~~~-------------~~~~v~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 139 (360)
T d1w23a_ 79 QFTMLPMNLLT-------------KGTIGNYVLTGSWSEKALKEAKL--LGETHIAASTKANSYQSIPDFSEFQL----N 139 (360)
T ss_dssp HHHHHHHHHCC-------------TTCEEEEEECSHHHHHHHHHHHT--TSEEEEEEECGGGTSCSCCCGGGCCC----C
T ss_pred HHHHHHhhhcc-------------cCcccceeeccchhhhhHHHHHH--hhhcceeeccccccccchhhhhhccc----c
Confidence 55444433322 24445443333333322222221 1344333332 1 2222222221 2
Q ss_pred cEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc
Q 019931 253 KKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 253 ~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G 328 (334)
..++.++ +.+|.+.|+++|.++|+++|+++|+|.++++|.. ..++ .+.|+.+.+++|.++..|
T Consensus 140 ~~~~~~~---~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~---------~id~-~~~~vd~~~~~~~k~~~~ 202 (360)
T d1w23a_ 140 ENDAYLH---ITSNNTIYGTQYQNFPEINHAPLIADMSSDILSR---------PLKV-NQFGMIYAGAQKNLGPSG 202 (360)
T ss_dssp TTEEEEE---EESEETTTTEECSSCCCCCSSCEEEECTTTTTSS---------CCCG-GGCSEEEEETTTTTSCTT
T ss_pred cccceeE---ecCCccccceeeeeccccceeeEEeecccccccc---------cccc-ccccceEEeeccccccCC
Confidence 2233333 3468899999999999999999999999998643 1122 123444556777665533
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=98.59 E-value=2.7e-08 Score=91.82 Aligned_cols=172 Identities=9% Similarity=-0.008 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHhcC-----CCC----ccccccCchHHHHHHHHHHHhHhCCCc---EEEeccHHHH-HHHHHHHHhhhhh
Q 019931 124 SHPTIAKAAARHGM-----GPR----GSALICGYTNYHRLLESCLADLKKKED---CLLCPTGFAA-NMAVIVAVGNIAS 190 (334)
Q Consensus 124 ~~p~v~~a~~~~g~-----g~~----~sr~~~G~~~~~~~LE~~La~~~g~e~---alv~~sG~~A-n~~ai~al~~~~~ 190 (334)
-+++|++++.+.-. |.+ ++|- .-...++++.++.|+++++.+. +++++++.++ +.+++..+..+
T Consensus 14 vp~~V~eam~~~~~~~~~~~~~~~~~sHRs-~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~~~-- 90 (361)
T d2c0ra1 14 LPLEVLERAQAEFVDYQHTGMSIMEMSHRG-AVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKE-- 90 (361)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTS-HHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCT--
T ss_pred CCHHHHHHHHHHHhhhcccCccccccCcCC-HHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhccccC--
Confidence 47899998876432 211 1221 1124677899999999999853 4555555444 44444444432
Q ss_pred hccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCC
Q 019931 191 LLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMD 265 (334)
Q Consensus 191 ~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~ 265 (334)
++.++.-...+. ......+.. ..+..+..... .+++.+++.++. .+ ++.+ ++.+
T Consensus 91 ------------~~~~l~~~~g~~-~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~v---~~~t 149 (361)
T d2c0ra1 91 ------------GQTANYVMTGSW-ASKALKEAK-LIGDTHVAASSEASNYMTLPKLQEIQLQ---DN-AAYL---HLTS 149 (361)
T ss_dssp ------------TCEEEEEECSHH-HHHHHHHHH-HHSCEEEEEECGGGTTCSCCCGGGCCCC---TT-EEEE---EEES
T ss_pred ------------CCceEEEeechh-hhhhhhhhh-hcCceeeeeccccccccchhhhhhhccc---Cc-ceEE---EEec
Confidence 454543322222 222222222 12566555543 255555554442 22 3332 2446
Q ss_pred CCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCcc
Q 019931 266 GDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQGG 329 (334)
Q Consensus 266 G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~GG 329 (334)
|...|+++|.++|+++|+++++|.++++|.. ...+ .++|+.+.|.+|.+++.||
T Consensus 150 g~~~~~~~i~~~~~~~~al~~vDavss~g~~---------~id~-~~~di~~~s~~k~~~~~~~ 203 (361)
T d2c0ra1 150 NETIEGAQFKAFPDTGSVPLIGDMSSDILSR---------PFDL-NQFGLVYAGAQKNLGPSGV 203 (361)
T ss_dssp EETTTTEECSSCCCCTTSCEEEECTTTTTSS---------CCCG-GGCSEEEEETTTTTCCSSC
T ss_pred ccceecceEEEeeccCCceEEEEeecccccc---------cccc-ccceeEEEecccccccccC
Confidence 7788888999999999999999999997632 1222 2356777899999988664
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=1.9e-07 Score=84.95 Aligned_cols=183 Identities=11% Similarity=-0.011 Sum_probs=103.3
Q ss_pred EEeecCccCCCCCCHHHHHHHHHhcC-----CCC----ccccccCchHHHHHHHHHHHhHhCCCc---EEEeccHHHHHH
Q 019931 112 LLFSGNDYLGLSSHPTIAKAAARHGM-----GPR----GSALICGYTNYHRLLESCLADLKKKED---CLLCPTGFAANM 179 (334)
Q Consensus 112 l~f~sn~yLgl~~~p~v~~a~~~~g~-----g~~----~sr~~~G~~~~~~~LE~~La~~~g~e~---alv~~sG~~An~ 179 (334)
.||...- . .-+|+|++++.++-. |.+ ++|- .-...+.++.++.|+++++.+. ++++++++++++
T Consensus 3 ~nF~pGP-~--~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs-~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~ 78 (360)
T d1bjna_ 3 FNFSSGP-A--MLPAEVLKQAQQELRDWNGLGTSVMEVSHRG-KEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQF 78 (360)
T ss_dssp EECCSSS-C--CCCHHHHHHHHHTSSSGGGSSSCGGGSCTTS-HHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred EEeCCCC-c--CCCHHHHHHHHHHHhhhcccCccccccCcCC-HHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHH
Confidence 4664432 1 248999999876432 111 1121 0113567899999999999743 444555555544
Q ss_pred HHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcE
Q 019931 180 AVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKK 254 (334)
Q Consensus 180 ~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~ 254 (334)
.+....... +++.++..... ........+.. ..+..++.+.. .+.+.++.++. .+++
T Consensus 79 ~a~~~~~~~-------------~~~~v~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 140 (360)
T d1bjna_ 79 AAVPLNILG-------------DKTTADYVDAG-YWAASAIKEAK-KYCTPNVFDAKVTVDGLRAVKPMREWQ---LSDN 140 (360)
T ss_dssp HHHHHHHCT-------------TCCEEEEEESS-HHHHHHHHHHT-TTSEEEEEECEEEETTEEEECCGGGCC---CCSS
T ss_pred hhhhhcccc-------------cccccceeccc-chhhhhHHHHh-hcCccceeeccccCCCcchhhhhhhhc---cCCc
Confidence 444332221 35666654333 33333333332 22444443331 13333333333 3566
Q ss_pred EEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccCCc
Q 019931 255 VVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGCQG 328 (334)
Q Consensus 255 lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~~G 328 (334)
++++...+|-+|...|++.+. ++.+++++++|.+++.+-+ .... .++|+.+.|.+|.+++.+
T Consensus 141 ~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~~---------~vd~-~~~dv~~~ss~k~~~~~~ 202 (360)
T d1bjna_ 141 AAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSR---------PIDV-SRYGVIYAGAQKNIGPAG 202 (360)
T ss_dssp CSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTTTTTSS---------CCCG-GGCSEEEEETTTTTSSTT
T ss_pred eeEEEecccccccCcccccee--cccccceeeeeeeccccce---------eeee-ccceeEEEEcccccccCC
Confidence 666556677888888877654 5778999999998876422 1121 346888999999998754
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.15 E-value=5.8e-06 Score=78.76 Aligned_cols=166 Identities=14% Similarity=0.058 Sum_probs=107.0
Q ss_pred cccCchHHHHHHHHHHHhHhCCCcEEEe-ccHHHHHHHHHHHHhhhhhhccCCCccCCCCCeEEEEcCCCchhhHHHHHH
Q 019931 144 LICGYTNYHRLLESCLADLKKKEDCLLC-PTGFAANMAVIVAVGNIASLLAGDEKSFKDEKIAIFSDALNHASIIDGIRI 222 (334)
Q Consensus 144 ~~~G~~~~~~~LE~~La~~~g~e~alv~-~sG~~An~~ai~al~~~~~~~~~~~~~~~~~gd~Vl~d~~~H~s~~~g~~l 222 (334)
...|.....-++++.|+++.|.+.+-+. ..|.+|-..++....+. + +...++.....|.+.......
T Consensus 102 ~sQG~Lq~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~-----------~-~~~~~~v~~~~~p~~~~v~~t 169 (437)
T d1wyua1 102 VSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRE-----------T-GRMGVLVSQGVHPEYRAVLRA 169 (437)
T ss_dssp GCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHH-----------H-TCCEEEEETTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhh-----------h-cccccccccccChHHhhhhhh
Confidence 4577778889999999999999977554 56766666655543332 1 133456667778775444332
Q ss_pred hhhcCCcEEEEeeCCCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEecCcccccccCCCcc
Q 019931 223 AERTKMVEVFVYKHCDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVELVKLRRKYGFLLVLDDAHGTFVCGKNGGG 302 (334)
Q Consensus 223 s~~~~g~~v~~~~~~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~L~ela~k~ga~LivDeAh~~Gv~G~~G~g 302 (334)
.....|.+++.++.++..... .+...++..|++..|+ ..|.+.++++|.+++++.|+++++|..-. . ++
T Consensus 170 ~a~~~g~~vv~v~~~~~~~~~---~~~~~~~Aavmi~~Pn-t~G~~ed~~~i~~~~h~~G~l~~~~ad~~-a-l~----- 238 (437)
T d1wyua1 170 YLEAVGAKLLTLPLEGGRTPL---PEVGEEVGAVVVQNPN-FLGALEDLGPFAEAAHGAGALFVAVADPL-S-LG----- 238 (437)
T ss_dssp HHHHTTCEEEEECCBTTBCCC---CCCCTTEEEEEEESSC-TTSBCCCHHHHHHHHHHTTCEEEEECCTT-G-GG-----
T ss_pred hcccceeeEEeeecccccchh---hhhccceeEEEEcccc-ccccccchHHHHHHhhhccceEEeeechh-h-hh-----
Confidence 222238899888765332111 1123478888888885 46999999999999999999888775432 2 21
Q ss_pred cccccCCCCCccEEEecCcccccC---C----ccEEeeC
Q 019931 303 VAEQFNCERDVDICVGTLSKAAGC---Q----GGFIACR 334 (334)
Q Consensus 303 ~~~~~~~~~~~Div~~SlsKa~G~---~----GG~i~~~ 334 (334)
.....+ .-++||++++ +|.||. . +|+++++
T Consensus 239 ~l~~Pg-~~GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~ 275 (437)
T d1wyua1 239 VLKPPG-AYGADIAVGD-GQSLGLPMGFGGPHFGFLATK 275 (437)
T ss_dssp TBCCHH-HHTCSEEEEE-CTTTTCCCGGGCSCCEEEEEC
T ss_pred cccccc-ccccceEeec-cceeccccCCCcCcccccccc
Confidence 110111 1257999999 888875 1 2677653
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=97.53 E-value=0.0018 Score=61.55 Aligned_cols=183 Identities=16% Similarity=0.096 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHhcCCCCccc---cccCchHHHHHHHHHHHhHhCCCcEEEe-ccHHHHHHHHH-HHHhhhhhhccCCCcc
Q 019931 124 SHPTIAKAAARHGMGPRGSA---LICGYTNYHRLLESCLADLKKKEDCLLC-PTGFAANMAVI-VAVGNIASLLAGDEKS 198 (334)
Q Consensus 124 ~~p~v~~a~~~~g~g~~~sr---~~~G~~~~~~~LE~~La~~~g~e~alv~-~sG~~An~~ai-~al~~~~~~~~~~~~~ 198 (334)
.+|.+.+.+.++-+..+-+. ...|+....-+++..|++++|.+-+... ..|.+|...++ ++..-.. ..+
T Consensus 77 y~P~v~~~~~~~~TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~---~~~--- 150 (471)
T d1wyub1 77 YNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHE---DRG--- 150 (471)
T ss_dssp CCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHH---HTT---
T ss_pred cCcchhhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhh---hcc---
Confidence 46888886655534333222 3567778888999999999999966543 45544443333 3221100 000
Q ss_pred CCCCCeEEEEcCCCchhhHHHHHHhhhcCCcEEEEeeC-----CCHHHHHHHHhcCCCCcEEEEEcCCCCCCCCccCHHH
Q 019931 199 FKDEKIAIFSDALNHASIIDGIRIAERTKMVEVFVYKH-----CDMSHLKTLLSCCTMRKKVVVTDSLFSMDGDFAPMVE 273 (334)
Q Consensus 199 ~~~~gd~Vl~d~~~H~s~~~g~~ls~~~~g~~v~~~~~-----~D~~~Le~~l~~~~~~~~lVv~e~v~n~~G~~~pL~~ 273 (334)
.......++.....|.......... +..++.++. .|.+.++.... .++..+++..+++........++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~v~v~~p~~~g~~e~~~~~ 223 (471)
T d1wyub1 151 EGRTRRVVLVPDSAHGSNPATASMA----GYQVREIPSGPEGEVDLEALKRELG---PHVAALMLTNPNTLGLFERRILE 223 (471)
T ss_dssp CTTTCCEEEEETTSCTHHHHHHHHT----TCEEEEECBCTTSSBCHHHHHHHCS---TTEEEEEECSSCTTSCCCTTHHH
T ss_pred cccccccccCCcccccceeeeeecc----cceeecccccccccccchhhhhhhh---ccccceeeccCCCcccccchhhh
Confidence 0011234555555555544443333 556665553 25566555543 36778888888776444456889
Q ss_pred HHHHHHHcCCEEEEecCcccccccCCCcccccccCCCCCccEEEecCcccccC
Q 019931 274 LVKLRRKYGFLLVLDDAHGTFVCGKNGGGVAEQFNCERDVDICVGTLSKAAGC 326 (334)
Q Consensus 274 L~ela~k~ga~LivDeAh~~Gv~G~~G~g~~~~~~~~~~~Div~~SlsKa~G~ 326 (334)
+.+++++.|+.+++|-+.....++-.-.| ....|++++-.++.||.
T Consensus 224 ~~~~~h~~g~~~~~~~~~~~~~~~l~~p~-------~~g~div~vg~~q~~G~ 269 (471)
T d1wyub1 224 ISRLCKEAGVQLYYDGANLNAIMGWARPG-------DMGFDVVHLNLHKTFTV 269 (471)
T ss_dssp HHHHHHHHTCEEEEEGGGGGGTTTTCCHH-------HHTCSEEECCTTTTTCC
T ss_pred hHHHHHhccccccccccchhhhhhccccC-------ccccccccccccccccc
Confidence 99999999999999876553322211000 11346777788888875
|