Citrus Sinensis ID: 019944

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---

MLNFCLMLKSPSLTTSVSSCNNGRGGSCSVYWRRRRKAPVLLQVSAASYQKFVDFAVNETKRHAVLAPSPLQEKYNTLVAMDGKTELQMSSFQAPKIRLLRSMSIQNEVMQVLDFAVFPKPEFDVPIFCANFFTAASTNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLNYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDKHDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLFNGIKELGSKKFLDYFPEYCCEDGTVNEKRSIIGKSFEHRPWDSGGEFVGDNLKVN

ccccccccccccccccccccccccccccccHHHHHccccccccccHHcHHHHHHHHHHHHHHcccccccccccccccEEccccccEEEEEEEEcHHHHHHHHHHHcccccEEEEEEEccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHcccHHcHHHHcccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccEEEEccccccccEcccccccccccccHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHHccccccccccHccEEEccccccEEEEEEcccHHHHHHHHHHHcccccEEEEEEEcccccccccEEEEEEEEccccEEEEEEccccccccccHHHHHHHHHHcHHHHHHHHHcccccccccHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHHHHHcHHHHHccccHHHHcHHHccccccccccccEEcccccccccccccEEEcccEEEc

mlnfclmlkspslttsvsscnngrggscsvywrrrrkapvLLQVSAASYQKFVDFAVNETkrhavlapsplqekyntlvamdgktelqmssfqapkIRLLRSMSIQNEVMQVLdfavfpkpefdvpifcanfftaastnivvldlnplhdvihhrdykdkyykslmplglnytkllpwggrltsesikFFSPIVIWtkftssqdKHDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTwraekdpghgVLKKLIGETLAADLLGNFLFNGIKelgskkfldyfpeyccedgtvnekrsiigksfehrpwdsggefvgdnlkvn

mlnfclmlkspslttsvsscnngrggscsvywRRRRKAPVLLQVSAASYQKFVDFAVNETKRhavlapsplqekYNTLVAMDGKTELQMSSFQAPKIRLLRSMSIQNEVMQVLDFAVFPKPEFDVPIFCANFFTAASTNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLNYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDKHDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLFNGIKELGSKKFLDYFPEYCCEDGTVNEKRSIIGksfehrpwdsggefvgdnlkvn

MLNFCLMLKSPSLTTsvsscnngrggscsvYWRRRRKAPVLLQVSAASYQKFVDFAVNETKRHAVLAPSPLQEKYNTLVAMDGKTELQMSSFQAPKIRLLRSMSIQNEVMQVLDFAVFPKPEFDVPIFCANFFTAASTNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLNYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDKHDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLFNGIKELGSKKFLDYFPEYCCEDGTVNEKRSIIGKSFEHRPWDSGGEFVGDNLKVN

***FCLML***********CNNGRGGSCSVYWRRRRKAPVLLQVSAASYQKFVDFAVNETKRHAVLAPSPLQEKYNTLVAMDG*******SFQAPKIRLLRSMSIQNEVMQVLDFAVFPKPEFDVPIFCANFFTAASTNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLNYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDKHDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLFNGIKELGSKKFLDYFPEYCCEDGTVNEKRSIIGKSFEH*****************

**N****LKSP***********************************ASYQKFVDFAVNETKRHAVLAPSPLQE************ELQMSSFQAPKIRLLRSMSIQNEVMQVLDFAVFPKPEFDVPIFCANFFTAASTNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLN*TK***WGGRLTSESIKFFSPIVIWTKFTSSQDKHDALYSAFMEYYKAWLKLMD*************NCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLFNGIKELGSKKFLDYFPEYCCEDG*******IIGKSFEHRPWDSGGEFVGDNLKV*

*LNFCLMLKSPSLTTSVSSCNNGRGGSCSVYWRRRRKAPVLLQVSAASYQKFVDFAVNETKRHAVLAPSPLQEKYNTLVAMDGKTELQMSSFQAPKIRLLRSMSIQNEVMQVLDFAVFPKPEFDVPIFCANFFTAASTNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLNYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDKHDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLFNGIKELGSKKFLDYFPEYCCEDGTVNEKRSIIGKSFEHRPWDSGGEFVGDNLKVN

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		333	2.2.26 [Sep-21-2011]
Q9SR43		329	Phytochromobilin:ferredox	yes	no	0.852	0.863	0.619	1e-110
Q93TM8		255	Phycoerythrobilin:ferredo	yes	no	0.693	0.905	0.317	3e-32
Q10UW6		256	Phycoerythrobilin:ferredo	yes	no	0.696	0.906	0.319	5e-32
Q7NL65		245	Phycoerythrobilin:ferredo	yes	no	0.675	0.918	0.306	3e-28
A9BCT2		257	Phycoerythrobilin:ferredo	yes	no	0.723	0.937	0.265	2e-18
A2C538		258	Phycoerythrobilin:ferredo	yes	no	0.573	0.740	0.280	2e-18
Q46IM1		258	Phycoerythrobilin:ferredo	yes	no	0.573	0.740	0.280	3e-18
Q7V585		257	Phycoerythrobilin:ferredo	yes	no	0.543	0.704	0.296	3e-17
Q7U4P6		262	Phycoerythrobilin:ferredo	yes	no	0.543	0.690	0.280	7e-17
A2CBW9		257	Phycoerythrobilin:ferredo	yes	no	0.543	0.704	0.285	9e-17

>sp\|Q9SR43\|PFBS_ARATH Phytochromobilin:ferredoxin oxidoreductase, chloroplastic OS=Arabidopsis thaliana GN=HY2 PE=2 SV=1	Back alignment and function desciption

 Score =  398 bits (1022), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 176/284 (61%), Positives = 229/284 (80%)

Query: 44  VSAASYQKFVDFAVNETKRHAVLAPSPLQEKYNTLVAMDGKTELQMSSFQAPKIRLLRSM 103
           VSA SY++F + A+ ET++  VL PS LQEKY+++  +DGKTELQM +F++ KIRLLRSM
Sbjct: 46  VSAVSYKEFAESALEETRKRIVLEPSHLQEKYSSMTGLDGKTELQMLAFKSSKIRLLRSM 105

Query: 104 SIQNEVMQVLDFAVFPKPEFDVPIFCANFFTAASTNIVVLDLNPLHDVIHHRDYKDKYYK 163
           +I+NE MQV DFA F +PE+D PIFCANFFT+ + NIVVLDLNPLH +    DY+DKYY 
Sbjct: 106 AIENETMQVFDFAGFMEPEYDTPIFCANFFTSTNVNIVVLDLNPLHQLTDQTDYQDKYYN 165

Query: 164 SLMPLGLNYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDKHDALYSAFMEYYKAWLKL 223
            +M +   Y +  PWGG+LT ESIKFFSP+V+WT+F+SS++KH AL+SAF+EYY+AWL++
Sbjct: 166 KIMSIYHKYAETFPWGGKLTGESIKFFSPLVMWTRFSSSKEKHKALFSAFLEYYQAWLEM 225

Query: 224 MDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLFNGIKE 283
             Q  EE + S +  NCEAQH+YLTWRA+KDPGHG+LK+L+GE  A +LL +FLFNG+ E
Sbjct: 226 TIQVREEMEPSHVRANCEAQHKYLTWRAQKDPGHGLLKRLVGEAKAKELLRDFLFNGVDE 285

Query: 284 LGSKKFLDYFPEYCCEDGTVNEKRSIIGKSFEHRPWDSGGEFVG 327
           LG+K F+DYFPEY  EDGTV++KRSIIGKS+E RPWD  G+F+G
Sbjct: 286 LGTKTFIDYFPEYQTEDGTVSDKRSIIGKSYETRPWDLTGQFIG 329

Catalyzes the two-electron reduction of biliverdin IX-alpha to the tetrapyrrole chromophore phytochromobilin (PPhiB).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 7EC: .EC: 4

>sp\|Q93TM8\|PEBB_NOSP7 Phycoerythrobilin:ferredoxin oxidoreductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=pebB PE=3 SV=1	Back alignment and function description

>sp\|Q10UW6\|PEBB_TRIEI Phycoerythrobilin:ferredoxin oxidoreductase OS=Trichodesmium erythraeum (strain IMS101) GN=pebB PE=3 SV=1	Back alignment and function description

>sp\|Q7NL65\|PEBB_GLOVI Phycoerythrobilin:ferredoxin oxidoreductase OS=Gloeobacter violaceus (strain PCC 7421) GN=pebB PE=3 SV=1	Back alignment and function description

>sp\|A9BCT2\|PEBB_PROM4 Phycoerythrobilin:ferredoxin oxidoreductase OS=Prochlorococcus marinus (strain MIT 9211) GN=pebB PE=3 SV=1	Back alignment and function description

>sp\|A2C538\|PEBB_PROM1 Phycoerythrobilin:ferredoxin oxidoreductase OS=Prochlorococcus marinus (strain NATL1A) GN=pebB PE=3 SV=1	Back alignment and function description

>sp\|Q46IM1\|PEBB_PROMT Phycoerythrobilin:ferredoxin oxidoreductase OS=Prochlorococcus marinus (strain NATL2A) GN=pebB PE=3 SV=1	Back alignment and function description

>sp\|Q7V585\|PEBB_PROMM Phycoerythrobilin:ferredoxin oxidoreductase OS=Prochlorococcus marinus (strain MIT 9313) GN=pebB PE=3 SV=1	Back alignment and function description

>sp\|Q7U4P6\|PEBB_SYNPX Phycoerythrobilin:ferredoxin oxidoreductase OS=Synechococcus sp. (strain WH8102) GN=pebB PE=3 SV=1	Back alignment and function description

>sp\|A2CBW9\|PEBB_PROM3 Phycoerythrobilin:ferredoxin oxidoreductase OS=Prochlorococcus marinus (strain MIT 9303) GN=pebB PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		333
255551337		330	Phytochromobilin:ferredoxin oxidoreducta	0.918	0.927	0.715	1e-135
296083823		387	unnamed protein product [Vitis vinifera]	0.864	0.744	0.747	1e-131
225436585		330	PREDICTED: phytochromobilin:ferredoxin o	0.864	0.872	0.747	1e-131
224104238		300	predicted protein [Populus trichocarpa]	0.861	0.956	0.747	1e-128
224054524		300	predicted protein [Populus trichocarpa]	0.873	0.97	0.713	1e-125
449442567		322	PREDICTED: phytochromobilin:ferredoxin o	0.951	0.984	0.634	1e-123
449518145		322	PREDICTED: phytochromobilin:ferredoxin o	0.948	0.981	0.636	1e-123
350540104		342	phytochromobilin synthase [Solanum lycop	0.870	0.847	0.683	1e-120
339778211		326	heme oxygenase 2 protein 2 [Populus bals	0.888	0.907	0.677	1e-119
339778225		326	heme oxygenase 2 protein 2 [Populus bals	0.888	0.907	0.674	1e-118

>gi\|255551337\|ref\|XP_002516715.1\| Phytochromobilin:ferredoxin oxidoreductase, chloroplast precursor, putative [Ricinus communis] gi\|223544210\|gb\|EEF45734.1\| Phytochromobilin:ferredoxin oxidoreductase, chloroplast precursor, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 219/306 (71%), Positives = 266/306 (86%)

Query: 27  SCSVYWRRRRKAPVLLQVSAASYQKFVDFAVNETKRHAVLAPSPLQEKYNTLVAMDGKTE 86
           + +V WR ++  P +LQVSA SYQKF+ FAV+ETKRH  L PSPLQEKY+++ A+D +TE
Sbjct: 25  TINVSWRIKKIKPHVLQVSAHSYQKFIHFAVSETKRHTSLVPSPLQEKYSSMTAVDCRTE 84

Query: 87  LQMSSFQAPKIRLLRSMSIQNEVMQVLDFAVFPKPEFDVPIFCANFFTAASTNIVVLDLN 146
           L+M SFQ+PKIRLLR+++I+NE MQVLDF V P+PEFDVPIFCANFFTAAS NI+VLDLN
Sbjct: 85  LKMQSFQSPKIRLLRTLNIENEAMQVLDFTVLPRPEFDVPIFCANFFTAASMNIIVLDLN 144

Query: 147 PLHDVIHHRDYKDKYYKSLMPLGLNYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDKH 206
           PLH+VI   DYK+KYYKSL+ +GL Y +L PWGG+LTSES++FFSPIV+WTKFTSSQ KH
Sbjct: 145 PLHNVIDRSDYKEKYYKSLLTVGLKYVELFPWGGKLTSESLQFFSPIVLWTKFTSSQSKH 204

Query: 207 DALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGE 266
           D LYSAF +YYK WL+L++QAVEETD+SQI+CN EAQH+YLTWRAEKDPGHGVLKKLIGE
Sbjct: 205 DDLYSAFADYYKVWLQLIEQAVEETDISQIICNREAQHKYLTWRAEKDPGHGVLKKLIGE 264

Query: 267 TLAADLLGNFLFNGIKELGSKKFLDYFPEYCCEDGTVNEKRSIIGKSFEHRPWDSGGEFV 326
           +LA DL+ NFLFNG+ ELGSK FLDYFP+Y C+DG +NEKRS+IGKSFE RPWD  GEF+
Sbjct: 265 SLAKDLVRNFLFNGLDELGSKGFLDYFPQYRCKDGNINEKRSVIGKSFEMRPWDINGEFI 324

Query: 327 GDNLKV 332
           G+N+ +
Sbjct: 325 GNNINI 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296083823\|emb\|CBI24211.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225436585\|ref\|XP_002278992.1\| PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224104238\|ref\|XP_002313368.1\| predicted protein [Populus trichocarpa] gi\|222849776\|gb\|EEE87323.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224054524\|ref\|XP_002298303.1\| predicted protein [Populus trichocarpa] gi\|222845561\|gb\|EEE83108.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449442567\|ref\|XP_004139053.1\| PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449518145\|ref\|XP_004166104.1\| PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|350540104\|ref\|NP_001234133.1\| phytochromobilin synthase [Solanum lycopersicum] gi\|62149356\|dbj\|BAD93478.1\| phytochromobilin synthase [Solanum lycopersicum] gi\|62149358\|dbj\|BAD93479.1\| phytochromobilin synthase [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|339778211\|gb\|AEK05987.1\| heme oxygenase 2 protein 2 [Populus balsamifera] gi\|339778215\|gb\|AEK05989.1\| heme oxygenase 2 protein 2 [Populus balsamifera]	Back alignment and taxonomy information

>gi\|339778225\|gb\|AEK05994.1\| heme oxygenase 2 protein 2 [Populus balsamifera] gi\|339778227\|gb\|AEK05995.1\| heme oxygenase 2 protein 2 [Populus balsamifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		333
TAIR\|locus:2083484		329	HY2 "ELONGATED HYPOCOTYL 2" [A	0.882	0.893	0.619	6e-103

TAIR\|locus:2083484 HY2 "ELONGATED HYPOCOTYL 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
 Identities = 182/294 (61%), Positives = 236/294 (80%)

Query:    34 RRRKAPVLLQVSAASYQKFVDFAVNETKRHAVLAPSPLQEKYNTLVAMDGKTELQMSSFQ 93
             RRRK   LL+VSA SY++F + A+ ET++  VL PS LQEKY+++  +DGKTELQM +F+
Sbjct:    36 RRRKKRFLLRVSAVSYKEFAESALEETRKRIVLEPSHLQEKYSSMTGLDGKTELQMLAFK 95

Query:    94 APKIRLLRSMSIQNEVMQVLDFAVFPKPEFDVPIFCANFFTAASTNIVVLDLNPLHDVIH 153
             + KIRLLRSM+I+NE MQV DFA F +PE+D PIFCANFFT+ + NIVVLDLNPLH +  
Sbjct:    96 SSKIRLLRSMAIENETMQVFDFAGFMEPEYDTPIFCANFFTSTNVNIVVLDLNPLHQLTD 155

Query:   154 HRDYKDKYYKSLMPLGLNYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDKHDALYSAF 213
               DY+DKYY  +M +   Y +  PWGG+LT ESIKFFSP+V+WT+F+SS++KH AL+SAF
Sbjct:   156 QTDYQDKYYNKIMSIYHKYAETFPWGGKLTGESIKFFSPLVMWTRFSSSKEKHKALFSAF 215

Query:   214 MEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLL 273
             +EYY+AWL++  Q  EE + S +  NCEAQH+YLTWRA+KDPGHG+LK+L+GE  A +LL
Sbjct:   216 LEYYQAWLEMTIQVREEMEPSHVRANCEAQHKYLTWRAQKDPGHGLLKRLVGEAKAKELL 275

Query:   274 GNFLFNGIKELGSKKFLDYFPEYCCEDGTVNEKRSIIGKSFEHRPWDSGGEFVG 327
              +FLFNG+ ELG+K F+DYFPEY  EDGTV++KRSIIGKS+E RPWD  G+F+G
Sbjct:   276 RDFLFNGVDELGTKTFIDYFPEYQTEDGTVSDKRSIIGKSYETRPWDLTGQFIG 329


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      333       318   0.00083  116 3  11 22  0.36    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  239 KB (2129 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.69u 0.12s 23.81t   Elapsed:  00:00:01
  Total cpu time:  23.69u 0.12s 23.81t   Elapsed:  00:00:01
  Start:  Fri May 10 16:22:12 2013   End:  Fri May 10 16:22:13 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010024 "phytochromobilin biosynthetic process" evidence=IEA;NAS

GO:0016636 "oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor" evidence=IEA

GO:0050619 "phytochromobilin:ferredoxin oxidoreductase activity" evidence=ISS;IDA

GO:0050897 "cobalt ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010019 "chloroplast-nucleus signaling pathway" evidence=IMP

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SR43	PFBS_ARATH	1, ., 3, ., 7, ., 4	0.6197	0.8528	0.8632	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.7.4	LOW CONFIDENCE prediction!
3rd Layer	1.3.7	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		333
pfam05996		228	pfam05996, Fe_bilin_red, Ferredoxin-dependent bili	4e-74
PRK13250		248	PRK13250, PRK13250, phycoerythrobilin:ferredoxin o	1e-43
PRK13249		257	PRK13249, PRK13249, phycoerythrobilin:ferredoxin o	1e-21
PRK13248		253	PRK13248, PRK13248, phycoerythrobilin:ferredoxin o	9e-19
PRK13247		238	PRK13247, PRK13247, dihydrobiliverdin:ferredoxin o	4e-15
PRK13246		236	PRK13246, PRK13246, dihydrobiliverdin:ferredoxin o	1e-09
PRK02816		243	PRK02816, PRK02816, phycocyanobilin:ferredoxin oxi	7e-05
pfam06405		255	pfam06405, RCC_reductase, Red chlorophyll cataboli	0.001

>gnl\|CDD\|218848 pfam05996, Fe_bilin_red, Ferredoxin-dependent bilin reductase	Back alignment and domain information

 Score =  227 bits (582), Expect = 4e-74
 Identities = 78/231 (33%), Positives = 119/231 (51%), Gaps = 9/231 (3%)

Query: 54  DFAVNETKRHAVLAPSPLQEKYNTLVAMDG--KTELQMSSFQAPKIRLLRSMSIQN-EVM 110
           DF     +    L P P+ E    +    G  K  ++   +Q+P  R LR       E +
Sbjct: 2   DFIRKAWQELLDLEPYPIPEGLEEIEGKLGGEKLTIENWLYQSPGFRKLRLERADAGESL 61

Query: 111 QVLDFAVFPKPEFDVPIFCANFFTAASTNIVV--LDLNPLHDVIHHRDYKDKYYKSLMPL 168
           QVL+  +FP P +D+PIF A+     + +I+   LDL PL      +DY +KYY+ L PL
Sbjct: 62  QVLNCVIFPDPRYDLPIFGADLVAFPAGHILAAILDLQPLKQ---DKDYPEKYYEGLKPL 118

Query: 169 GLNYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDKHDALYSAFMEYYKAWLKLMDQAV 228
              Y+ L P G +L     + FSP V++T+    +++ + L+SAF EY + +L+L+DQA 
Sbjct: 119 KNKYSDLFPQGRKLPEWGTQIFSPWVLFTR-PGDEEEEERLFSAFKEYLQVYLQLVDQAE 177

Query: 229 EETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLFN 279
             +D  +I    E Q  Y  ++AE DP  GVL+   GE  A   +  FLF+
Sbjct: 178 PVSDAERIAEILEGQKNYCQYQAENDPARGVLESAFGEEWAERYIHEFLFD 228

This family consists of several different but closely related proteins which include phycocyanobilin:ferredoxin oxidoreductase EC:1.3.7.5 (PcyA), 15,16-dihydrobiliverdin:ferredoxin oxidoreductase EC:1.3.7.2 (PebA) and phycoerythrobilin:ferredoxin oxidoreductase EC:1.3.7.3 (PebB). Phytobilins are linear tetrapyrrole precursors of the light-harvesting prosthetic groups of the phytochrome photoreceptors of plants and the phycobiliprotein photosynthetic antennae of cyanobacteria, red algae, and cryptomonads. It is known that that phytobilins are synthesised from heme via the intermediary of biliverdin IX alpha (BV), which is reduced subsequently by ferredoxin-dependent bilin reductases with different double-bond specificities. Length = 228

>gnl\|CDD\|139427 PRK13250, PRK13250, phycoerythrobilin:ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>gnl\|CDD\|139426 PRK13249, PRK13249, phycoerythrobilin:ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>gnl\|CDD\|139425 PRK13248, PRK13248, phycoerythrobilin:ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>gnl\|CDD\|237315 PRK13247, PRK13247, dihydrobiliverdin:ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>gnl\|CDD\|106208 PRK13246, PRK13246, dihydrobiliverdin:ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>gnl\|CDD\|179478 PRK02816, PRK02816, phycocyanobilin:ferredoxin oxidoreductase; Validated	Back alignment and domain information

>gnl\|CDD\|203437 pfam06405, RCC_reductase, Red chlorophyll catabolite reductase (RCC reductase)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		333
PRK13250		248	phycoerythrobilin:ferredoxin oxidoreductase; Provi	100.0
PRK13248		253	phycoerythrobilin:ferredoxin oxidoreductase; Provi	100.0
PRK13249		257	phycoerythrobilin:ferredoxin oxidoreductase; Provi	100.0
PRK13246		236	dihydrobiliverdin:ferredoxin oxidoreductase; Provi	100.0
PRK13247		238	dihydrobiliverdin:ferredoxin oxidoreductase; Provi	100.0
PRK02816		243	phycocyanobilin:ferredoxin oxidoreductase; Validat	100.0
PF05996		228	Fe_bilin_red: Ferredoxin-dependent bilin reductase	100.0
PF06405		255	RCC_reductase: Red chlorophyll catabolite reductas	99.89
PLN02581		267	red chlorophyll catabolite reductase	99.88

>PRK13250 phycoerythrobilin:ferredoxin oxidoreductase; Provisional	Back alignment and domain information

Probab=100.00  E-value=2.6e-74  Score=538.87  Aligned_cols=236  Identities=33%  Similarity=0.634  Sum_probs=223.3

Q ss_pred             chHHHHHHHHHHhhccCCcccccchhhhhhhccCC------CCeEEEeccccccccceeeeeEEe-cCCCceEEEEEeCC
Q 019944           48 SYQKFVDFAVNETKRHAVLAPSPLQEKYNTLVAMD------GKTELQMSSFQAPKIRLLRSMSIQ-NEVMQVLDFAVFPK  120 (333)
Q Consensus        48 ~y~~fl~~l~~~l~~~~~L~p~pl~~~l~~~~~~~------g~~~i~~~~~qs~~iR~~R~~hlE-G~~lqVLn~VifP~  120 (333)
                      +|++|+++|+++|+.+++|+|+++|++|+++++..      .+++|+|||||++++|++|.++++ |+++|||||||||+
T Consensus         3 ~~~~Fl~~~~~~~~~~~~l~p~~l~~~l~~~~~~~~~~~~~~~~~i~n~~~q~~~fRk~r~~~~~~G~~lqVLn~V~fP~   82 (248)
T PRK13250          3 LYQPFLDYAITLLTERLELQPYPIPAGFERKEAMTGKGKKQEEVVTTSYAFQSPKLRQIRAAHVQGGSALQVLNFVIFPH   82 (248)
T ss_pred             chHHHHHHHHHHHhhcCCCCCCCCchhhhhhhhhccccccCCceEEeehhhcCcHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence            69999999999998889999999999999998843      468999999999999999999999 99999999999999


Q ss_pred             CCCCCccccccccccCCceEEEEecCCCCCccCcCcchHHHHhhchhhhhhhcccCCCCCCCCcccccccccceEEEecC
Q 019944          121 PEFDVPIFCANFFTAASTNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLNYTKLLPWGGRLTSESIKFFSPIVIWTKFT  200 (333)
Q Consensus       121 p~yDLPiFG~DlV~~~~~~lailDlqPl~~~~~d~~y~~kY~~~L~~l~~~~r~lppWG~~~~~e~~~iFSp~~Lf~R~~  200 (333)
                      |+|||||||||||++|++++|||||||+++.  +.+|.++|++.+++++++||++||||+++|+|++|||||+|||||+.
T Consensus        83 p~yDLPiFGaDlv~~~~~~laalDlqPl~~~--~~~Y~~~~~~~l~~~~~~~r~l~~wg~~~~~e~~~~FSp~~lf~Rp~  160 (248)
T PRK13250         83 LNYDLPFFGADLVTLPGGHLIALDMQPLFRD--DPAYQAKYTEPILPLFNAHQAHLPWGGDFPEEAKPFFSPAFLWTRPQ  160 (248)
T ss_pred             cCCCCCccceeeeecCCceEEEEECCcccCc--HHHHHHHHHHhhHHHHhhhhhcCCccccCcchhHhhcCCceEEEecC
Confidence            9999999999999999877888999999963  25999999999999999999999999999999999999999999999


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHHHHHhhCChhhhHHhhhChHHHHHHHHhccCCC
Q 019944          201 SSQDKHDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLFNG  280 (333)
Q Consensus       201 ~~ee~~~~l~~aF~~yl~~yL~~~~~a~~~~~~~~~~~~~~~Q~~Y~~~qaenDPar~vL~r~FG~eWAeryI~e~LFd~  280 (333)
                      +.+++++.++.||.+||+.|++++.+|+++++.+.+.++.++|++||+||+|||||||||+|+||++|||+||++||||.
T Consensus       161 ~~~~~e~~lf~af~~YL~~y~~~~~~a~~~~~~~~~~~i~~~Q~~Y~~yqaenDpar~vL~k~FG~eWae~yi~~~LFd~  240 (248)
T PRK13250        161 ETEVVETRVFEAFKDYLQAYLDFVEQAEAVTDSEQLAEILQAQLRYLRYRAEKDPARGMFTRFYGEEWTEEYIHGFLFDL  240 (248)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHhChHHHHHHHHhcCcCC
Confidence            99988999999999999999999999999988877889999999999999999999999999999999999999999999


Q ss_pred             CCCcc
Q 019944          281 IKELG  285 (333)
Q Consensus       281 ~~~l~  285 (333)
                      ...+.
T Consensus       241 ~~~~~  245 (248)
T PRK13250        241 ERKLS  245 (248)
T ss_pred             Ccccc
Confidence            76653

>PRK13248 phycoerythrobilin:ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>PRK13249 phycoerythrobilin:ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>PRK13246 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>PRK13247 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>PRK02816 phycocyanobilin:ferredoxin oxidoreductase; Validated	Back alignment and domain information

>PF05996 Fe_bilin_red: Ferredoxin-dependent bilin reductase; InterPro: IPR009249 This family consists of several different but closely related proteins which include phycocyanobilin:ferredoxin oxidoreductase 1	Back alignment and domain information

>PF06405 RCC_reductase: Red chlorophyll catabolite reductase (RCC reductase); InterPro: IPR009439 This family consists of several red chlorophyll catabolite reductase (RCC reductase) proteins	Back alignment and domain information

>PLN02581 red chlorophyll catabolite reductase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		333
2x9o_A		244	Structure Of 15, 16- Dihydrobiliverdin:ferredoxin O		6e-10
2g18_A		253	Crystal Structure Of Nostoc Sp. 7120 Phycocyanobili		1e-06
3f0l_A		248	Crystal Structure Of Oxidized D105n Synechocystis S		4e-04
3nb8_A		248	Crystal Structure Of Oxidized H88q Synechocystis Sp		9e-04

>pdb|2X9O|A Chain A, Structure Of 15, 16- Dihydrobiliverdin:ferredoxin Oxidoreductase (Peba) Length = 244

Back alignment and structure

Iteration: 1

Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 19/227 (8%) Query: 60 TKRHAVLAPSPLQEKYNTLVAMDGKTELQMSSFQAPKIRLLRSMSIQ-NEVMQVLDFAVF 118 TKR +P PL E + + +Q + P R R + + +QV + + Sbjct: 22 TKRGG--SPLPLPEGLEECRSSKSSSVIQSWLWDVPGFRRWRVTRLDAGDSLQVFNSVAY 79 Query: 119 PKPEFDVPIFCAN--FFTAASTNIVVLDLNPLHDVIHHRDYKDKYYKSLMPLGLNYTKLL 176 P +D P+ + +F A + VLD PL + +DY D+Y+ L L + L Sbjct: 80 PDYNYDHPLXGVDLLWFGARQKLVAVLDFQPL---VQDKDYLDRYFSGLKELNQRFPDL- 135 Query: 177 PWGGRLTSESI---KFFSPIVIWTKFTSSQDKHDALYSAFMEYYKAWLKLMDQA--VEET 231 G T S ++FS +++ + + Q +L AF + KA+ L D A + T Sbjct: 136 --NGEETXRSFDPNQYFSSWLLFCRGGAEQADL-SLPKAFSAFLKAYWDLHDNAKSIPST 192 Query: 232 DVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLF 278 + + N Q +Y + AE+DP HG+ G+ + L FLF Sbjct: 193 IPPEEVKNL--QDKYDIYSAERDPAHGLFTSHFGKDWSNRFLHEFLF 237

PyMOL of 2x9o

>pdb|2G18|A Chain A, Crystal Structure Of Nostoc Sp. 7120 Phycocyanobilin:ferredoxin Oxidoreductase (Pcya) Apoprotein Length = 253

Back alignment and structure

>pdb|3F0L|A Chain A, Crystal Structure Of Oxidized D105n Synechocystis Sp. Pcya Length = 248

Back alignment and structure

>pdb|3NB8|A Chain A, Crystal Structure Of Oxidized H88q Synechocystis Sp. Pcya Length = 248

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		333
2x9o_A		244	15,16- dihydrobiliverdin-ferredoxin oxidoreductas;	5e-57
2g18_A		253	Phycocyanobilin:ferredoxin oxidoreductase; alpha-b	9e-42
3i94_A		248	Phycocyanobilin:ferredoxin oxidoreductase; alpha-b	5e-40
2vcl_A		233	Cyanobacterial phycoerythrobilin; cyanophages, bil	1e-35
3agc_A		276	RED chlorophyll catabolite reductase, chloroplast;	1e-19
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>2x9o_A 15,16- dihydrobiliverdin-ferredoxin oxidoreductas; phycobilin synthesis, cyanobacteria, oxidoreductase, phycoerythrobilin; HET: BLA; 1.55A {Synechococcus SP} Length = 244	Back alignment and structure

 Score =  184 bits (467), Expect = 5e-57
 Identities = 53/244 (21%), Positives = 94/244 (38%), Gaps = 8/244 (3%)

Query: 42  LQVSAASYQKFVDFAVNETKRHAVLAPSPLQEKYNTLVAMDGKTELQMSSFQAPKIRLLR 101
           L      +  F++   ++  +    +P PL E      +    + +Q   +  P  R  R
Sbjct: 3   LGSPEFIFDSFLNELHSDITKRG-GSPLPLPEGLEECRSSKSSSVIQSWLWDVPGFRRWR 61

Query: 102 SMSIQ-NEVMQVLDFAVFPKPEFDVPIFCANF--FTAASTNIVVLDLNPLHDVIHHRDYK 158
              +   + +QV +   +P   +D P+   +   F A    + VLD  PL      +DY 
Sbjct: 62  VTRLDAGDSLQVFNSVAYPDYNYDHPLMGVDLLWFGARQKLVAVLDFQPLVQ---DKDYL 118

Query: 159 DKYYKSLMPLGLNYTKLLPWGGRLTSESIKFFSPIVIWTKFTSSQDKHDALYSAFMEYYK 218
           D+Y+  L  L   +  L       + +  ++FS  +++ +  + Q     L  AF  + K
Sbjct: 119 DRYFSGLKELNQRFPDLNGEETMRSFDPNQYFSSWLLFCRGGAEQADLS-LPKAFSAFLK 177

Query: 219 AWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFLF 278
           A+  L D A               Q +Y  + AE+DP HG+     G+  +   L  FLF
Sbjct: 178 AYWDLHDNAKSIPSTIPPEEVKNLQDKYDIYSAERDPAHGLFTSHFGKDWSNRFLHEFLF 237

Query: 279 NGIK 282
               
Sbjct: 238 PASS 241

PyMOL of 2x9o

>2g18_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich; 2.50A {Anabaena SP} Length = 253	Back alignment and structure

>3i94_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich, enzyme-substrate analog complex; HET: BL3; 1.04A {Synechocystis SP} PDB: 2dke_A 2d1e_A* 3i8u_X* 3i95_A* 3f0l_A* 3f0m_A* 3f0j_A* 3f0k_A* 3nb8_A* 3nb9_A* 3ajg_A* 3ajh_A* Length = 248	Back alignment and structure

>2vcl_A Cyanobacterial phycoerythrobilin; cyanophages, biliverdin IXA, oxidoreductase, phycobilin reductase, phycobilin synthesis; 1.55A {Prochlorococcus phage p-ssm2} PDB: 2vck_A 2vgr_A* 2x9i_A* 2x9j_A* Length = 233	Back alignment and structure

>3agc_A RED chlorophyll catabolite reductase, chloroplast; chlorophyll degradation, substrate-bound enzyme, chlorophyll catabolism, NADP; HET: RCC; 2.00A {Arabidopsis thaliana} PDB: 3agb_A* 3aga_A* 2zxl_A 2zxk_A Length = 276	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		333
2x9o_A		244	15,16- dihydrobiliverdin-ferredoxin oxidoreductas;	100.0
2g18_A		253	Phycocyanobilin:ferredoxin oxidoreductase; alpha-b	100.0
3i94_A		248	Phycocyanobilin:ferredoxin oxidoreductase; alpha-b	100.0
2vcl_A		233	Cyanobacterial phycoerythrobilin; cyanophages, bil	100.0
3agc_A		276	RED chlorophyll catabolite reductase, chloroplast;	100.0

>2x9o_A 15,16- dihydrobiliverdin-ferredoxin oxidoreductas; phycobilin synthesis, cyanobacteria, oxidoreductase, phycoerythrobilin; HET: BLA; 1.55A {Synechococcus SP}	Back alignment and structure

Probab=100.00  E-value=6.9e-69  Score=501.39  Aligned_cols=238  Identities=21%  Similarity=0.369  Sum_probs=215.2

Q ss_pred             eeeccccchHHHHHHHHHHhhccCCcccccchhhhhhhccCCCCeEEEeccccccccceeeeeEEe-cCCCceEEEEEeC
Q 019944           41 LLQVSAASYQKFVDFAVNETKRHAVLAPSPLQEKYNTLVAMDGKTELQMSSFQAPKIRLLRSMSIQ-NEVMQVLDFAVFP  119 (333)
Q Consensus        41 ~~~~~~~~y~~fl~~l~~~l~~~~~L~p~pl~~~l~~~~~~~g~~~i~~~~~qs~~iR~~R~~hlE-G~~lqVLn~VifP  119 (333)
                      +|.+++|+|+||+++|.+.|.++ +|+|+++|++|+++++++++++|+|||||++++|++|.++++ |+++|||||||||
T Consensus         2 ~~~~~~~~~~p~l~~l~~~i~~~-~l~p~~~~~~l~~~~~~~~~~~i~n~~y~~~~fRk~r~~~~~~g~~lqVLh~V~fP   80 (244)
T 2x9o_A            2 PLGSPEFIFDSFLNELHSDITKR-GGSPLPLPEGLEECRSSKSSSVIQSWLWDVPGFRRWRVTRLDAGDSLQVFNSVAYP   80 (244)
T ss_dssp             -----CHHHHHHHHHHHHHHHHT-TCEEECCCTTSSEEECTTTCCEEEEEEEECTTEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             CcCcchhhhhHHHHHHHHHHHHc-CCccCCCChHhhhhhcCCCceEEEEEEecCchHhHHHHHHhccCCCcEEEEEEecc
Confidence            46789999999999999999997 999999999999999988899999999999999999999999 9999999999999


Q ss_pred             CCCCCCccccccccccCC-ceE-EEEecCCCCCccCcCcchHHHHhhchhhhhhhcccCCCCCCCCcccccccccceEEE
Q 019944          120 KPEFDVPIFCANFFTAAS-TNI-VVLDLNPLHDVIHHRDYKDKYYKSLMPLGLNYTKLLPWGGRLTSESIKFFSPIVIWT  197 (333)
Q Consensus       120 ~p~yDLPiFG~DlV~~~~-~~l-ailDlqPl~~~~~d~~y~~kY~~~L~~l~~~~r~lppWG~~~~~e~~~iFSp~~Lf~  197 (333)
                      +|+|||||||||||++++ +.| |||||||+++   |++|+++|+++|+++.++|.++.++++..+.|+.+||||+||||
T Consensus        81 ~~~ydlPiFG~Dlv~~~~~~~l~AilDlqP~~~---d~~y~~~Y~~~L~~l~~~~~~~~~~~~~~~~e~~~~FSp~~lf~  157 (244)
T 2x9o_A           81 DYNYDHPLMGVDLLWFGARQKLVAVLDFQPLVQ---DKDYLDRYFSGLKELNQRFPDLNGEETMRSFDPNQYFSSWLLFC  157 (244)
T ss_dssp             CTTCCCCEEEEEEEEEGGGTEEEEEEEEECSCC---CHHHHHHHCHHHHHHHHHCTTC--CCCCSSSCTTSSCCTTCEEE
T ss_pred             CCCCCCCeehhheeccCCCceEEEEEEcCCCCC---hhhchHHHHHHHHHHHHHHHhhcCccCCChhhhHhhcCCceEEE
Confidence            999999999999999975 445 5999999996   67999999999999999999988777655558999999999999


Q ss_pred             ecCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHhHHHHHHHHHHHHHhhCChhhhHHhhhChHHHHHHHHhcc
Q 019944          198 KFTSSQDKHDALYSAFMEYYKAWLKLMDQAVEETDVSQIMCNCEAQHRYLTWRAEKDPGHGVLKKLIGETLAADLLGNFL  277 (333)
Q Consensus       198 R~~~~ee~~~~l~~aF~~yl~~yL~~~~~a~~~~~~~~~~~~~~~Q~~Y~~~qaenDPar~vL~r~FG~eWAeryI~e~L  277 (333)
                      |+. ++++++.+++||.+||++|++++++|+++++..+++++.++|++||+||+|||||||||+|+||++|||+||++||
T Consensus       158 R~~-~~~~~~~~~~af~~yL~~~l~~~~~a~p~~~~~~~~~i~~~Q~~Y~~~qaenDpar~vl~~~FG~ewae~yi~~~L  236 (244)
T 2x9o_A          158 RGG-AEQADLSLPKAFSAFLKAYWDLHDNAKSIPSTIPPEEVKNLQDKYDIYSAERDPAHGLFTSHFGKDWSNRFLHEFL  236 (244)
T ss_dssp             EEC-HHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHCHHHHHHHHHHTT
T ss_pred             eCC-cHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHcCHHHHHHHHHHcC
Confidence            965 6777889999999999999999999999977667788999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 019944          278 FNGIKE  283 (333)
Q Consensus       278 Fd~~~~  283 (333)
                      ||+.++
T Consensus       237 Fd~~~~  242 (244)
T 2x9o_A          237 FPASSS  242 (244)
T ss_dssp             STTCC-
T ss_pred             cCCCcC
Confidence            999765

PyMOL of 2x9o

>2g18_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich; 2.50A {Anabaena SP}	Back alignment and structure

>3i94_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich, enzyme-substrate analog complex; HET: BL3; 1.04A {Synechocystis SP} PDB: 2dke_A 2d1e_A* 3i8u_X* 3i95_A* 3f0l_A* 3f0m_A* 4eod_A* 4eoe_A* 3f0j_A* 3f0k_A* 3nb8_A* 3nb9_A* 3ajg_A* 3ajh_A* 4eoc_A*	Back alignment and structure

>2vcl_A Cyanobacterial phycoerythrobilin; cyanophages, biliverdin IXA, oxidoreductase, phycobilin reductase, phycobilin synthesis; 1.55A {Prochlorococcus phage p-ssm2} PDB: 2vck_A 2vgr_A* 2x9i_A* 2x9j_A*	Back alignment and structure

>3agc_A RED chlorophyll catabolite reductase, chloroplast; chlorophyll degradation, substrate-bound enzyme, chlorophyll catabolism, NADP; HET: RCC; 2.00A {Arabidopsis thaliana} PDB: 3agb_A* 3aga_A* 2zxl_A 2zxk_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00